Permeability evaluation of gemcitabine-CPP6 conjugates in Caco-2 cells


doi: http://dx.doi.org/10.5599/admet.882   41 

ADMET & DMPK 9(1) (2021) 41-48; doi: https://dx.doi.org/10.5599/admet.882  

 
Open Access : ISSN : 1848-7718  

http://www.pub.iapchem.org/ojs/index.php/admet/index   

Original scientific paper 

Permeability evaluation of gemcitabine-CPP6 conjugates in 
Caco-2 cells 

Abigail Ferreira
1,2

, Sara Moreira
1,3

, Rui Lapa
2
 and Nuno Vale

1,4* 

1
 OncoPharma Research Group, Center for Health Technology and Services Research (CINTESIS), Rua Dr. Plácido da 

Costa, 4200-450 Porto, Portugal 
2 

LAQV/REQUIMTE, Laboratory of Applied Chemistry, Department of Chemical Sciences, Faculty of Pharmacy, 
University of Porto, Rua de Jorge Viterbo Ferreira, 228, 4050-313 Porto, Portugal 
3 

Faculty of Sciences, University of Porto, Rua do Campo Alegre, 687, 4169-007 Porto, Portugal 
4
 Faculty of Medicine, University of Porto, Al. Prof. Hernâni Monteiro, 4200-319 Porto, Portugal 

 *Corresponding Author:  E-mail: nunovale@med.up.pt; Tel.: +351-225513600; Fax: +351-225513601 

Received: July 04, 2020; Revised: October 13, 2020; Published: October 26, 2020  

 

Abstract 

Cancer is one of the most alarming diseases due to its high mortality and still increasing incidence rate. 
Currently available treatments for this condition present several shortcomings and new options are 
continuously being developed and evaluated, aiming at increasing the overall treatment efficiency and 
reducing associated adverse side effects. Gemcitabine has proven activity and is used in chemotherapy. 
However, its therapeutic efficiency is limited by its low bioavailability as a result of rapid enzymatic 
inactivation. Additionally, tumor cells often develop drug resistance after initial tumor regression related 
to transporter deficiency. We have previously developed three gemcitabine conjugates with cell-
penetrating hexapeptides (CPP6) to facilitate intracellular delivery of this drug while also preventing 
enzymatic deamination. The bioactivity of these new prodrugs was evaluated in different cell lines and 
showed promising results. Here, we assessed the absorption and permeability across Caco-2 monolayers 
of these conjugates in comparison with gemcitabine and the respective isolated cell-penetrating peptides 
(CPPs). CPP6-2 (KLPVMW) and respective Gem-CPP6-2 conjugate showed the highest permeability in Caco-
2 cells. 

©2021 by the authors. This article is an open-access article distributed under the terms and conditions of the Creative Commons 
Attribution license (http://creativecommons.org/licenses/by/4.0/). 

Keywords 

Cell-Penetrating Peptides; Permeability; Solubility; Caco-2; DMPK. 

 

Introduction 

Cancer is the second leading cause of death worldwide. There were 18 million new cases and 9.6 million 

cancer related deaths in 2018. Globally, about one in six deaths is due to cancer. Lung and prostate cancers 

are the most prevalent in men, while breast and colorectum cancers affect women the most [1]. Drug 

resistance and overall treatment inefficacy are responsible for the high mortality of this multifactorial 

disease. Difficulty in recognizing altered cells and distinguishing them from normal cells as well as reaching 

metastases are the main hurdles of cancer therapy. Research in this field strives to maximize efficacy while 

reducing adverse side effects. 

http://dx.doi.org/10.5599/admet.882
https://dx.doi.org/10.5599/admet.882
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N. Vale et al.  ADMET & DMPK 9(1) (2021) 41-48 

42  

Gemcitabine (Gem, dFdC or 2′,2′-difluoro-2′-deoxycytidine, Scheme 1) is a cytotoxic nucleoside analogue 

used as a chemotherapeutic drug. It is effective against an extensive range of solid tumors, such as 

pancreatic, non-small cell lung, breast and ovarian cancers, and is often a first-line treatment in clinical 

settings [2]. Despite being administered intravenously, treatment with gemcitabine has limited efficacy 

largely due to its short half-life (8-17 min), since gemcitabine is rapidly inactivated metabolically in the 

serum through deamination of its 4-N amine by cytidine deaminase (CDA), present in high levels in both 

human plasma and liver. As such, much higher doses are required to reach an effective plasma 

concentration, increasing toxicity and the risk of adverse side effects. Another major obstacle is the drug 

resistance related to nucleoside transporter deficiency, which is developed by some tumor cells after initial 

tumor regression. As a hydrophilic drug, gemcitabine cellular uptake is primarily facilitated by the human 

equilibrative nucleoside transporter 1 (hENT1). Thus, the expression of this transporter plays a key role in 

gemcitabine intracellular uptake [3]. There have been many efforts to improve gemcitabine clinical efficacy 

and numerous derivatives and prodrugs have been designed to alter some of the unfavorable 

physicochemical properties of gemcitabine and ideally improve its oral bioavailability [4]. Our research 

group has previously developed gemcitabine conjugates with cell-penetrating peptides (CPPs) to facilitate 

intracellular delivery of this drug [5-6]. In three of these new prodrugs, a cell-penetrating hexapeptide 

(CPP6) was covalently conjugated to the aniline moiety of gemcitabine through suitable bio-/chemo-

reversible bonds. Two CPP5 (KLPVM and VPMLK) with reported high percentage of cell-penetration were 

selected. One tryptophan (Trp) residue was added to the terminal of these CPP5 to further improve their 

capacity of cell-penetration, since Trp has high propensity to be inserted into membranes [7-8], yielding 

three novel hexapeptides: CPP6-1 (WKLPVM), CPP6-2 (KLPVMW), and CPP6-3 (WVPMLK). These conjugates 

were designed to facilitate intracellular delivery of this drug and even overcome the problem of transporter 

deficiency related drug resistance, as CPPs are non-cytotoxic vectors and drug delivery vehicles. 

Additionally, gemcitabine is protected from CDA enzymatic deamination since its 4-N amine was modified. 

The bioactivity of these new prodrugs was previously evaluated in different cell lines and showed promising 

results [5].  

In this work, we have evaluated the absorption and permeability of gemcitabine, three CPP6 and the 

respective Gem-CPP6 conjugates across Caco-2 monolayers. The single layer of epithelial cells that covers 

the inner intestinal wall forms the rate-limiting barrier to the absorption of dissolved compounds 

administered orally. Consequently, proper reconstitution of a human differentiated epithelial cell 

monolayer in vitro can be used to predict the absorption and permeability coefficients of orally 

administered drugs. The human colon carcinoma cell line Caco-2 has been successfully used to fulfill this 

purpose and monolayers grown on permeable filters have become the in vitro golden standard for these 

predictions [9]. This method is recognized by the American Food and Drug Administration (FDA) [10]. 

Experimental  

Cell culture 

Human colon adenocarcinoma cell line Caco-2 (passage 25-47, kindly provided by the Department of 

Biomedicine of the Faculty of Medicine of University of Porto, and previously acquired via ATCC) was 

routinely maintained in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10 % fetal bovine 

serum (FBS), L-glutamine and antibiotics penicillin and streptomycin. Cells were cultured at 37 °C in a 5 % 

CO2 humidified atmosphere. Culturing medium was replaced every 2-3 days and cell subculture was 

conducted once a week by trypsinization (0.25 % trypsin-EDTA wt/vol, 5 min, 37 °C). 



ADMET & DMPK 9(1) (2021) 41-48 Permeability of gemcitabine-CPP6 conjugates in Caco-2 cells 

doi: http://dx.doi.org/10.5599/admet.882   43 

Cytotoxicity assay 

The cell growth inhibitory activity of gemcitabine in Caco-2 cells was assessed with the MTT assay. 

Briefly, a growth curve was traced to determine the best cell density for the assay. Cells were seeded in 96-

well plates (growth surface 0.322 cm
2
, from TPP®, Product No. 92696) with an initial cell density of 9.3 x 10

3
 

cells/mL (200 μL per well). Cells were allowed to attach for 24 h and were then either left untreated 

(culture medium was replaced for fresh medium) or treated with gemcitabine (0.1, 1, 5, 10, 20, 50, 100, 

1000, 10000 and 100000 µM). Following 72 h incubation, cell medium was removed and 100 μL of MTT (3-

(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) solution were added per well. Cells were then 

incubated for another 4 h protected from light. Finally, MTT solution was removed, DMSO (100 μL per well) 

was added to solubilize the formazan crystals formed by viable cells and absorbance was measured at 

570 nm in an automated microplate reader (Sinergy HT, Biotek Instruments Inc, Vermont, USA). All 

conditions were performed in triplicate. 

Gemcitabine cytotoxicity results were compared with the untreated control (mean of values was set to 

100 %) and expressed as mean ± SEM. The statistical significance between different gemcitabine 

concentrations was analyzed in GraphPad Prism 7 (San Diego, EUA) using one-way ANOVA (p<0.05). 

 

Scheme 1. Chemical structure of gemcitabine (before and after modification and conjugation with CPP6) and 
of the three CPP6 studied, CPP6-1 (WKLPVM), CPP6-2 (KLPVMW) and CPP6-3 (WVPMLK). 

Preparation of CPPs and gemcitabine-CPP6 conjugates 

All the compounds evaluated in this work (except for Gemcitabine, that was purchase from Sigma-

Aldrich as Gemcitabine hydrochloride, G6423) had been previously synthesized by our research group [5]. 

Briefly, CPP6-1 (WKLPVM), CPP6-2 (KLPVMW) and CPP6-3 (WVPTLK) were manually synthesized using 

Gemcitabine

Gemcitabine

Gemcitabine

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N. Vale et al.  ADMET & DMPK 9(1) (2021) 41-48 

44  

standard solid phase peptide synthesis (SPPS) and Fmoc chemistry. Gemcitabine was modified to allow 

conjugation with CPP6. First, the two hydroxyl groups of gemcitabine were selectively protected with Boc 

groups; then, succinic anhydride was linked to the 4-N amine and lastly a CPP6 was conjugated to this 

anticancer drug. Some properties of these new conjugates are presented in Table 1. 

Permeability assay 

A monolayer of Caco-2 cells was established in a 12-well plate [11]. Each well contains a permeable filter 

insert, a transparent collagen treated (equimolar mixture of types I and III collagen) polytetrafluoroethylene 

(PTFE) membrane, with 12 mm diameter and 0.4 µm pore (Corning Inc, Corning Transwell  COL collagen 

coated membrane inserts, NY, USA, Cat. No. 3493). Firstly, filters were pre-wet with 0.1 mL of culture 

medium for 2 minutes. Cells were seeded in the apical side (0.5 mL of cells per well, cell density of 4.0 x 10
5
 

cells/mL). The basolateral compartment was filled with 1.5 mL of culture medium and plates were 

incubated for 6 h (5 % CO2 humidified atmosphere at 37 °C). Then, to remove non-adherent cells and 

reduce the risk of multilayer formation, the medium in the apical side was removed and replaced with fresh 

medium. Cells were maintained for 29 days, replacing the culture medium from both compartments every 

other day. 

Transport across Caco-2 monolayer assay 

All the solutions used were pre-warmed to 37 °C. Culture medium was replaced with fresh medium 24 h 

prior the beginning of the experiment. Next, this culture medium was removed first from the basolateral 

and then from the apical compartment. The apical compartment was carefully washed and then filled with 

0.5 mL of Hank’s Balanced Salt Solution (HBSS, pH 7.4) and the basolateral compartment was also filled with 

1.5 mL of HBSS. The plates were incubated for 17 min at 37 °C under gentle shaking (190 rpm, GFL® Orbital 

Shaker 3015). All tested compounds were prepared in HBBS (60 µM) and added to the apical compartment. 

Throughout this assay, the final volume was 0.4 mL in the apical compartment and 1.2 mL in the basolateral 

chamber. At t = 0 min, 0.45 mL of the donor solution was added to the apical compartment and a sample 

(0.05 mL) was immediately taken. The plate was incubated (lid-covered) at 37 °C under gentle shaking (190 

rpm). Every 30 min for the next 2 h, a sample of 0.6 mL was taken from the basolateral compartment and 

replaced with the same volume of HBSS. After 120 min, a sample of 0.05 mL was taken from the apical side. 

HPLC quantification 

The concentrations of the evaluated compound in the basolateral and apical compartments were 

determined by high-performance liquid chromatography (HPLC) (VWR International LCC, LaChrom Ultra, 

Pennsylvania, USA). Elution was performed with a variable gradient of acetonitrile (ACN) in water 

containing 0.05 % trifluoroacetic acid (TFA), at a 0.7 mL/min flow and detection at variable wavelength (243 

nm for gemcitabine and 220 nm for peptides and conjugates). All chemicals were either analytical or HPLC 

grade. 

Results and discussion 

Gemcitabine cytotoxicity 

Every concentration of gemcitabine tested caused a statistically significant inhibition of cell growth in 

Caco-2 cells compared to untreated cells (Figure 1). The maximum inhibition was observed after treatment 

with the highest concentration of gemcitabine evaluated (100000 µM). The IC50 was calculated as 52.4 µM. 

 



ADMET & DMPK 9(1) (2021) 41-48 Permeability of gemcitabine-CPP6 conjugates in Caco-2 cells 

doi: http://dx.doi.org/10.5599/admet.882   45 

 

Figure 1. Concentration-dependent cytotoxicity of gemcitabine in Caco-2 cells (Abs 570 nm). Results are 
presented as (A) the percentage of inhibition compared to control untreated cells and (B) plotted as the log 
[gemcitabine] against the percentage of control untreated cells. Results are expressed as mean ± SEM (n=3; 

p<0.05, one-way ANOVA). 

Caco-2 monolayer and permeability of Gemcitabine 

Microscopic analysis of the filter revealed a uniformly formed monolayer, with no detection of 

anomalies or areas without cells. A Caco-2 monolayer was successfully established and this is a reliable 

indicator for proceeding with the permeability study. 

After 30 minutes, just 3 % of Gemcitabine was found in the basolateral side. At the 90 min time point, a 

plateau was reached and only an additional 1 % of the drug crossed the membrane until the end of assay 

(120 min), with a total of 18 % of the amount of Gemcitabine initially applied in the apical side having 

crossed into the basolateral compartment. 

Permeability of CPP6 

Comparable amounts of the 3 CPP6 crossed the monolayer of Caco-2 cells after 120 minutes. Still, CPP6-

2 exhibited the highest permeability, with 40 % being recovered in the basolateral chamber, followed by 

CPP6-3 (37 %) and CPP6-1 (33 %). During the first 30 minutes, only 4 to 5 % of all CPPs reached the 

basolateral side; the rate of permeation was highest between 30 and 90 minutes. CPP6-2 and CPP6-3 

registered a decrease in this rate for the last 30 minutes of this assay. Throughout the experiment, a slower 

rate of permeation was observed for CPP6-1 (Figure 2). 

By the end of the experiment, the sum of the CPP absorbed from the apical side and found in the 

basolateral chamber was 84 % for CPP6-2, 75 % for CPP6-3 and 50 % for CPP6-1. This indicates that some 

http://dx.doi.org/10.5599/admet.882


N. Vale et al.  ADMET & DMPK 9(1) (2021) 41-48 

46  

peptide is retained inside the cells or was degraded. 

 

 

Figure 2. Concentration of CPP6 in the basolateral compartment after incubation with 60 µM in the apical 
compartment and fitted curves. 

Permeability of Gem-CPP6 conjugates 

As for the Gem-CPP6 conjugates, the conjugate of gemcitabine with CPP6-2 clearly stands out as the 

most permeable across the Caco-2 cell monolayer. The extent of permeation of this conjugate was about 3-

fold the observed for the Gem-CPP6-1 and Gem-CPP6-3 conjugates. Approximately 31 % of the Gem-CPP6-

2 conjugate was found in the basolateral chamber, while only 9 % of Gem-CPP6-1 and Gem-CPP6-3 

conjugates were able to cross the monolayer of Caco-2 cells and was quantified in this compartment 

(Figure 3). 

The higher permeability of the Gem-CPP6-2 conjugate is in agreement with the previous evaluation of 

the permeability of the isolated CPP6, with CPP6-2 being the most permeable peptide. Of the three studied 

CPP6, CPP6-2 is the only one that has a Trp residue in its C-terminal (CPP6-1 and CPP6-3 have a Trp residue 

in the N-terminal position). Additionally, the only difference between CPP6-1 and CPP6-2 is the position of 

this amino acid residue (N-terminal versus C-terminal). 

Tryptophan can be considered hydrophobic due to its uncharged side chain. Given its aromatic 

character, it can form hydrogen bonds and strongly interact with cellular membranes, disrupting the 

stability of the membrane lipidic chains. These properties grant this amino acid residue a great tendency to 

insert into membranes [12-15]. It has been shown that the replacement of the 2 Trp residues of the known 

CPP Penetratin for phenylalanine residues completely eliminates the penetration ability of this peptide [16]. 

Furthermore, Rydberg et al. have reported that the number of Trp residues in a CPP is relevant, with a 

higher number of Trp residues in a CPP corresponding to greater penetration ability [12]. These authors 

have also demonstrated that the position of this residue is another factor influencing permeability; in this 

case, CPPs with Trp residues in the N-terminal position were less absorbed. 

Some properties of these new Gem-CPP6 conjugates were predicted using in silico tools and are 

presented in Table 1. Gem-CPP6-2 has the highest calculated Papp and is also predicted as the most 

permeable conjugate by GastroPlus™, a mechanistically based pharmacokinetics and pharmacodynamics 

simulation software.  

 



ADMET & DMPK 9(1) (2021) 41-48 Permeability of gemcitabine-CPP6 conjugates in Caco-2 cells 

doi: http://dx.doi.org/10.5599/admet.882   47 

 

Figure 3. Permeability of the Gem-CPP6 conjugates, expressed as the percentage recovered in the basolateral 
compartment. 

Table 1. Physicochemical and in silico pharmacokinetic data of CPP6-Gemcitabine conjugates. 

Peptide/Conjugate 
MW 

(g/mol) 
PSA 

a
 (Å

2
) HBD 

Peff (cm/s) 
b
 

(x10
-6

) 
Peff (cm/s) 

c
 

(x10
-9

) 
Papp (cm/s) 

(x10
-8

) 

Gem-CPP6-1 1117.29 247.63 13 3.19 1.31 1.326 

Gem-CPP6-2 1117.29 247.63 13 3.82 1.31 4.568 

Gem-CPP6-3 1087.20 267.86 14 2.47 0.412 1.326 
a
 Polar surface area, predicted by MedChem Designer (version 3.1.0.30, Simulations Plus, Inc., Lancaster, California, USA); 

b 
Effective permeability, predicted by GastroPlus™ (version 9.5, Simulations Plus, Inc., Lancaster, California, USA); 

c
 Effective permeability, calculated from Winiwarter equation: Log Peff = (-2.546) – (0.011 x PSA) – (0.278 x HBD); HBD: hydrogen 

bond donors; [17]. 

Conclusions 

The monolayer of Caco-2 cells was a suitable method to study the permeability of the anticancer drug 

gemcitabine, the cell-penetrating hexapeptides (CPP6) and the new prodrug conjugates Gem-CPP6. Every 

CPP6 and Gem-CPP6 conjugate was able to cross this monolayer, suggesting their potential as drug delivery 

systems. In agreement with previous reports, the position of the Trp residue was a determinant factor 

influencing the permeability of the CPP6 and Gem-CPP6 conjugates. Amongst the evaluated compounds, 

CPP6-2 and the respective Gem-CPP6-2 conjugate showed the highest permeability, crossing the cell 

monolayer to a greater extent. This data puts forward this conjugate as a lead for further studies and as the 

most promising for potential clinical application. 

Acknowledgements 

This work was financed by FEDER – Fundo Europeu de Desenvolvimento Regional through the COMPETE 

2020 – Operational Programme for Competitiveness and Internationalization (POCI), Portugal 2020, and by 

Portuguese funds through FCT – Fundação para a Ciência e a Tecnologia, in a framework of CINTESIS, R&D 

Unit (reference UIDB/4255/2020). N.V. also thanks support FCT and FEDER (European Union), award 

number IF/00092/2014/CP1255/CT0004. RL thanks FCT through grant UID/QUI/50006/2019 (LAQV-

REQUIMTE). AF thanks FCT for a doctoral fellowship (PD/BD/135120/2017). The contents of this article are 

solely the responsibility of the authors and do not necessarily represent the official view of the FCT. 

Conflict of interest: On behalf of all authors, the corresponding author states that there is no conflict of 
interest. 

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N. Vale et al.  ADMET & DMPK 9(1) (2021) 41-48 

48  

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