id	sid	eid	entity	type
ajlm-1429	1	1	lesley	ORG
ajlm-1429	1	2	e. scott	PERSON
ajlm-1429	1	3	university of the witwatersrand	ORG
ajlm-1429	1	4	johannesburg	GPE
ajlm-1429	1	5	south africa	GPE
ajlm-1429	1	6	university of the witwatersrand	ORG
ajlm-1429	1	7	johannesburg	GPE
ajlm-1429	1	8	south africa	GPE
ajlm-1429	1	9	singh	GPE
ajlm-1429	1	10	university of the witwatersrand	ORG
ajlm-1429	1	11	johannesburg	GPE
ajlm-1429	1	12	johannesburg	GPE
ajlm-1429	1	13	south africa	GPE
ajlm-1429	1	14	trish kahamba department of molecular medicine	ORG
ajlm-1429	1	15	university of the witwatersrand	ORG
ajlm-1429	1	16	johannesburg	GPE
ajlm-1429	1	17	south africa	GPE
ajlm-1429	1	18	diana r. hardie	PERSON
ajlm-1429	1	19	university of cape town	ORG
ajlm-1429	1	20	cape town	GPE
ajlm-1429	1	21	south africa	GPE
ajlm-1429	1	22	wolfgang preiser division of medical virology	PERSON
ajlm-1429	1	23	stellenbosch university	ORG
ajlm-1429	1	24	cape town	GPE
ajlm-1429	1	25	south africa	GPE
ajlm-1429	1	26	national health laboratory service	ORG
ajlm-1429	1	27	cape town	GPE
ajlm-1429	1	28	south africa	GPE
ajlm-1429	1	29	wendy s. stevens	PERSON
ajlm-1429	1	30	university of the witwatersrand	ORG
ajlm-1429	1	31	johannesburg	GPE
ajlm-1429	1	32	south africa	GPE
ajlm-1429	1	33	johannesburg	GPE
ajlm-1429	1	34	south africa	GPE
ajlm-1429	1	35	scott le	PERSON
ajlm-1429	1	36	singh	GPE
ajlm-1429	1	37	2	CARDINAL
ajlm-1429	1	38	covid-19	PRODUCT
ajlm-1429	2	1	afr j	PERSON
ajlm-1429	3	1	2022;11(1	CARDINAL
ajlm-1429	4	1	2	CARDINAL
ajlm-1429	4	2	covid-19	PRODUCT
ajlm-1429	4	3	e. scott	PERSON
ajlm-1429	4	4	lara d. noble	PERSON
ajlm-1429	4	5	singh	GPE
ajlm-1429	4	6	trish kahamba	PERSON
ajlm-1429	4	7	diana r. hardie	PERSON
ajlm-1429	4	8	wolfgang preiser	PERSON
ajlm-1429	4	9	wendy s. stevens	PERSON
ajlm-1429	4	10	15 oct. 2021	TIME
ajlm-1429	4	11	07 feb. 2022	DATE
ajlm-1429	4	12	26	CARDINAL
ajlm-1429	5	1	2022	CARDINAL
ajlm-1429	5	2	2022	CARDINAL
ajlm-1429	9	1	2	CARDINAL
ajlm-1429	9	2	2019	DATE
ajlm-1429	9	3	covid-19	ORG
ajlm-1429	9	4	first	ORDINAL
ajlm-1429	9	5	wuhan	GPE
ajlm-1429	9	6	china	GPE
ajlm-1429	9	7	december 2019.1	DATE
ajlm-1429	9	8	the world health organization	ORG
ajlm-1429	9	9	covid-19	PERSON
ajlm-1429	9	10	11	CARDINAL
ajlm-1429	9	11	more than 280 million	CARDINAL
ajlm-1429	9	12	over 5 million	CARDINAL
ajlm-1429	9	13	31 december 2021.3	DATE
ajlm-1429	10	1	514	CARDINAL
ajlm-1429	10	2	december	DATE
ajlm-1429	10	3	2021.4	CARDINAL
ajlm-1429	10	4	australia	GPE
ajlm-1429	10	5	brazil	GPE
ajlm-1429	10	6	canada	GPE
ajlm-1429	10	7	europe	LOC
ajlm-1429	10	8	japan	GPE
ajlm-1429	10	9	the united states	GPE
ajlm-1429	10	10	the united states food	GPE
ajlm-1429	10	11	the united states	GPE
ajlm-1429	10	12	cdc	ORG
ajlm-1429	12	1	mid-2020	DATE
ajlm-1429	12	2	21	CARDINAL
ajlm-1429	12	3	claims6	PERSON
ajlm-1429	13	1	8%	PERCENT
ajlm-1429	13	2	july 2020	DATE
ajlm-1429	13	3	0.1	CARDINAL
ajlm-1429	13	4	august 2020.7	DATE
ajlm-1429	13	5	south africa	GPE
ajlm-1429	16	1	1	CARDINAL
ajlm-1429	18	1	flocked.10,11	CARDINAL
ajlm-1429	23	1	1 ml	QUANTITY
ajlm-1429	23	2	3 ml	QUANTITY
ajlm-1429	24	1	2 °	QUANTITY
ajlm-1429	24	2	8°	QUANTITY
ajlm-1429	26	1	1	CARDINAL
ajlm-1429	26	2	2	CARDINAL
ajlm-1429	28	1	nuclisens®	ORG
ajlm-1429	28	2	biomérieux	GPE
ajlm-1429	28	3	johannesburg	GPE
ajlm-1429	28	4	south africa	GPE
ajlm-1429	30	1	qiagen	ORG
ajlm-1429	30	2	hilden	GPE
ajlm-1429	30	3	germany	GPE
ajlm-1429	31	1	lyra®	ORG
ajlm-1429	31	2	san diego	GPE
ajlm-1429	31	3	california	GPE
ajlm-1429	31	4	united states	ORG
ajlm-1429	31	5	istanbul	GPE
ajlm-1429	31	6	turkey	GPE
ajlm-1429	31	7	needed).12	GPE
ajlm-1429	33	1	300	CARDINAL
ajlm-1429	33	2	xpert	PERSON
ajlm-1429	33	3	xpress®	PERSON
ajlm-1429	33	4	cepheid	ORG
ajlm-1429	33	5	sunnyvale	GPE
ajlm-1429	33	6	california	GPE
ajlm-1429	33	7	united states	GPE
ajlm-1429	33	8	400	CARDINAL
ajlm-1429	33	9	roche	ORG
ajlm-1429	33	10	basel	GPE
ajlm-1429	33	11	500	CARDINAL
ajlm-1429	33	12	abbott	GPE
ajlm-1429	33	13	chicago	GPE
ajlm-1429	33	14	illinois	GPE
ajlm-1429	33	15	united states	GPE
ajlm-1429	34	1	between 100	CARDINAL
ajlm-1429	34	2	300	CARDINAL
ajlm-1429	35	1	10	CARDINAL
ajlm-1429	35	2	diagnóstica longwood	GPE
ajlm-1429	35	3	zaragoza	GPE
ajlm-1429	35	4	spain	GPE
ajlm-1429	35	5	30	CARDINAL
ajlm-1429	38	1	abbott	GPE
ajlm-1429	38	2	chicago	GPE
ajlm-1429	38	3	illinois	GPE
ajlm-1429	38	4	united states	ORG
ajlm-1429	40	1	biorad	ORG
ajlm-1429	40	2	hercules	GPE
ajlm-1429	40	3	california	GPE
ajlm-1429	40	4	united states	ORG
ajlm-1429	41	1	fisher	ORG
ajlm-1429	41	2	waltham	GPE
ajlm-1429	41	3	massachusetts	GPE
ajlm-1429	41	4	united states	ORG
ajlm-1429	42	1	[cepheid	PERSON
ajlm-1429	42	2	sunnyvale	GPE
ajlm-1429	42	3	california	GPE
ajlm-1429	42	4	united states	ORG
ajlm-1429	42	5	1000–1500/day	DATE
ajlm-1429	42	6	roche	ORG
ajlm-1429	42	7	basel	GPE
ajlm-1429	42	8	switzerland	GPE
ajlm-1429	43	1	96	CARDINAL
ajlm-1429	44	1	8	CARDINAL
ajlm-1429	44	2	seegene	NORP
ajlm-1429	44	3	seoul	GPE
ajlm-1429	44	4	south korea	GPE
ajlm-1429	44	5	10	CARDINAL
ajlm-1429	44	6	fisher	PERSON
ajlm-1429	44	7	waltham	GPE
ajlm-1429	44	8	massachusetts	GPE
ajlm-1429	44	9	united states	ORG
ajlm-1429	44	10	14	CARDINAL
ajlm-1429	44	11	kit ce-ivd	PERSON
ajlm-1429	44	12	waltham	GPE
ajlm-1429	44	13	massachusetts	GPE
ajlm-1429	44	14	united states	ORG
ajlm-1429	45	1	as low as 5	CARDINAL
ajlm-1429	49	1	1a	CARDINAL
ajlm-1429	49	2	1b	CARDINAL
ajlm-1429	53	1	two	CARDINAL
ajlm-1429	53	2	second	ORDINAL
ajlm-1429	57	1	covid-19	ORG
ajlm-1429	62	1	vl	ORG
ajlm-1429	62	2	technologies15	ORG
ajlm-1429	62	3	fisher	PERSON
ajlm-1429	62	4	waltham	GPE
ajlm-1429	62	5	massachusetts	GPE
ajlm-1429	62	6	united states	ORG
ajlm-1429	69	1	accuplex	PERSON
ajlm-1429	70	1	seracare	GPE
ajlm-1429	70	2	milford	GPE
ajlm-1429	70	3	massachusetts	GPE
ajlm-1429	70	4	united states	ORG
ajlm-1429	73	1	3	CARDINAL
ajlm-1429	73	2	32	CARDINAL
ajlm-1429	73	3	96	CARDINAL
ajlm-1429	76	1	axell-house	ORG
ajlm-1429	77	1	at least seven	CARDINAL
ajlm-1429	77	2	south africa	GPE
ajlm-1429	84	1	24	CARDINAL
ajlm-1429	84	2	1	CARDINAL
ajlm-1429	86	1	four	CARDINAL
ajlm-1429	86	2	1	CARDINAL
ajlm-1429	86	3	2	CARDINAL
ajlm-1429	86	4	3	CARDINAL
ajlm-1429	86	5	4	CARDINAL
ajlm-1429	87	1	24	CARDINAL
ajlm-1429	87	2	1	CARDINAL
ajlm-1429	87	3	9	CARDINAL
ajlm-1429	87	4	2	CARDINAL
ajlm-1429	87	5	12	CARDINAL
ajlm-1429	87	6	3	CARDINAL
ajlm-1429	87	7	3	CARDINAL
ajlm-1429	87	8	35.0%	PERCENT
ajlm-1429	87	9	25.0%	PERCENT
ajlm-1429	87	10	20%	PERCENT
ajlm-1429	87	11	10.0%	PERCENT
ajlm-1429	87	12	10.0%	PERCENT
ajlm-1429	88	1	90%	PERCENT
ajlm-1429	88	2	62.5%	PERCENT
ajlm-1429	88	3	15/24	CARDINAL
ajlm-1429	88	4	95%	PERCENT
ajlm-1429	88	5	37.5%	PERCENT
ajlm-1429	88	6	9/24	CARDINAL
ajlm-1429	89	1	3	CARDINAL
ajlm-1429	89	2	at least a	CARDINAL
ajlm-1429	89	3	20%	PERCENT
ajlm-1429	89	4	72.0%	PERCENT
ajlm-1429	89	5	1 (	PERCENT
ajlm-1429	89	6	95%	PERCENT
ajlm-1429	89	7	2	CARDINAL
ajlm-1429	89	8	92.0%	PERCENT
ajlm-1429	90	1	27	CARDINAL
ajlm-1429	91	1	3	CARDINAL
ajlm-1429	91	2	3	CARDINAL
ajlm-1429	94	1	1	CARDINAL
ajlm-1429	97	1	only half	CARDINAL
ajlm-1429	98	1	national health laboratory service	ORG
ajlm-1429	98	2	lucia hans	PERSON
ajlm-1429	98	3	kim steegen	PERSON
ajlm-1429	98	4	irene ketseoglou	PERSON
ajlm-1429	98	5	puleng marokane	PERSON
ajlm-1429	98	6	pedro da silva	PERSON
ajlm-1429	98	7	somayya sarang	ORG
ajlm-1429	98	8	national institute of communicable	ORG
ajlm-1429	98	9	olga perovic	PERSON
ajlm-1429	98	10	mignon du plessis	PERSON
ajlm-1429	98	11	blessing kadira	PERSON
ajlm-1429	98	12	singh	GPE
ajlm-1429	98	13	timothy moshema	PERSON
ajlm-1429	99	1	stellenbosch	ORG
ajlm-1429	99	2	national health laboratory service	ORG
ajlm-1429	99	3	bavesh kana	PERSON
ajlm-1429	99	4	bhavna gordhan	PERSON
ajlm-1429	99	5	harsha desai	PERSON
ajlm-1429	99	6	mohapi mokone	PERSON
ajlm-1429	101	1	a.s.-m.	GPE
ajlm-1429	101	2	t.k.	GPE
ajlm-1429	101	3	d.r.h.	PERSON
ajlm-1429	101	4	w.p.	GPE
ajlm-1429	103	1	the university of the witwatersrand human research ethics committee	ORG
ajlm-1429	104	1	melinda gates foundation	ORG
ajlm-1429	107	1	zhu n	PERSON
ajlm-1429	107	2	wang w	PERSON
ajlm-1429	108	1	china	GPE
ajlm-1429	108	2	2019	DATE
ajlm-1429	110	1	2020;382(8):727–733	CARDINAL
ajlm-1429	112	1	covid-19	ORG
ajlm-1429	112	2	11	CARDINAL
ajlm-1429	113	1	2020	DATE
ajlm-1429	114	1	2020	DATE
ajlm-1429	114	2	2	CARDINAL
ajlm-1429	115	1	johns hopkins university	ORG
ajlm-1429	116	1	covid-19	ORG
ajlm-1429	117	1	2022	CARDINAL
ajlm-1429	117	2	2021	CARDINAL
ajlm-1429	117	3	dec 31	DATE
ajlm-1429	119	1	covid-19	PERSON
ajlm-1429	121	1	2022	CARDINAL
ajlm-1429	121	2	2021	CARDINAL
ajlm-1429	121	3	dec 28	DATE
ajlm-1429	122	1	shuren j	PERSON
ajlm-1429	122	2	covid-19	DATE
ajlm-1429	126	1	3 july 2020	DATE
ajlm-1429	127	1	2020	DATE
ajlm-1429	128	1	2020	CARDINAL
ajlm-1429	128	2	jul 27	DATE
ajlm-1429	130	1	covid-19	ORG
ajlm-1429	130	2	covid-19	PRODUCT
ajlm-1429	131	1	2020	DATE
ajlm-1429	132	1	2020	DATE
ajlm-1429	132	2	aug 08	DATE
ajlm-1429	133	1	feng w	PERSON
ajlm-1429	134	1	covid-19	PERSON
ajlm-1429	137	1	vandenberg o	PERSON
ajlm-1429	137	2	rochas o	PERSON
ajlm-1429	137	3	van belkum	PERSON
ajlm-1429	137	4	kozlakidis z. considerations	PERSON
ajlm-1429	137	5	covid-19	PERSON
ajlm-1429	138	1	nat rev microbiol	PERSON
ajlm-1429	139	1	2021;19(3):171–183	CARDINAL
ajlm-1429	140	1	covid-19	PERSON
ajlm-1429	142	1	2021	CARDINAL
ajlm-1429	142	2	dec 22	DATE
ajlm-1429	143	1	stevens w	PERSON
ajlm-1429	143	2	scott l.	PERSON
ajlm-1429	143	3	three	CARDINAL
ajlm-1429	145	1	2020;s6:005	CARDINAL
ajlm-1429	146	1	marais g	PERSON
ajlm-1429	146	2	naidoo m	PERSON
ajlm-1429	146	3	hsiao n-y	PERSON
ajlm-1429	146	4	hardie	ORG
ajlm-1429	146	5	south africa 2020	GPE
ajlm-1429	147	1	plos one	PERSON
ajlm-1429	148	1	2020	DATE
ajlm-1429	148	2	oct 20;15(10):e0241029	DATE
ajlm-1429	150	1	2020	DATE
ajlm-1429	151	1	zhang j	PERSON
ajlm-1429	151	2	li j. primer	PERSON
ajlm-1429	154	1	first	ORDINAL
ajlm-1429	155	1	j mol sci	PERSON
ajlm-1429	156	1	https://doi.org/10.3390/ijms21155585 world health organization	ORG
ajlm-1429	158	1	2020	DATE
ajlm-1429	159	1	2021	CARDINAL
ajlm-1429	159	2	dec 17	DATE
ajlm-1429	160	1	infectiousness	ORG
ajlm-1429	160	2	rt-pcr cycle threshold	ORG
ajlm-1429	160	3	covid-19	GPE
ajlm-1429	160	4	england	GPE
ajlm-1429	160	5	january to may 2020	DATE
ajlm-1429	163	1	rao sn	PERSON
ajlm-1429	163	2	pareja j.	PERSON
ajlm-1429	163	3	covid-19	GPE
ajlm-1429	165	1	hre plm	PERSON
ajlm-1429	166	1	covid-19	PERSON
ajlm-1429	167	1	clin infect dis	ORG
ajlm-1429	168	1	2020;73(3):e799	ORG
ajlm-1429	168	2	https://doi.org/10.1093/cid/ciaa1338 european centres	PRODUCT
ajlm-1429	169	1	the united kingdom	GPE
ajlm-1429	169	2	20 december 2020	DATE
ajlm-1429	170	1	2020	DATE
ajlm-1429	171	1	2021	CARDINAL
ajlm-1429	171	2	jan 12	DATE
ajlm-1429	173	1	26	CARDINAL
ajlm-1429	173	2	november 2021	DATE
ajlm-1429	174	1	the national institute for	ORG
ajlm-1429	174	2	nicd	ORG
ajlm-1429	174	3	south africa	GPE
ajlm-1429	175	1	2021	CARDINAL
ajlm-1429	176	1	2021	CARDINAL
ajlm-1429	176	2	nov 27	DATE
ajlm-1429	177	1	https://www.nicd.ac.za/wp-content/uploads/2021/11/update-of-sa-sequencing-data-from-gisaid-26-nov_final.pdf axell-house	ORG
ajlm-1429	177	2	rafferty m	PERSON
ajlm-1429	177	3	clark e	PERSON
ajlm-1429	177	4	amirian	NORP
ajlm-1429	178	1	covid-19	PERSON
ajlm-1429	180	1	2020;81(5):681–697	CARDINAL
ajlm-1429	182	1	xinchun chen	PERSON
ajlm-1429	182	2	jialou zhu	GPE
ajlm-1429	184	1	2020;100:7–9	CARDINAL
ajlm-1429	185	1	https://doi.org/10.1016/j.ijid.2020.08.041 mina mj	ORG
ajlm-1429	185	2	parker	PERSON
ajlm-1429	186	1	covid-19	ORG
ajlm-1429	190	1	south african	NORP
ajlm-1429	191	1	covid-19	ORG
ajlm-1429	193	1	2020	DATE