id	sid	tid	token	lemma	pos
ajlm-2900	1	1	abstract	abstract	ADJ
ajlm-2900	1	2	introduction	introduction	NOUN
ajlm-2900	1	3	methods	method	NOUN
ajlm-2900	1	4	results	result	VERB
ajlm-2900	1	5	discussion	discussion	NOUN
ajlm-2900	1	6	acknowledgements	acknowledgement	NOUN
ajlm-2900	1	7	references	reference	NOUN
ajlm-2900	1	8	about	about	ADP
ajlm-2900	1	9	the	the	DET
ajlm-2900	1	10	author(s	author(s	NOUN
ajlm-2900	1	11	)	)	PUNCT
ajlm-2900	1	12	anthony	anthony	PROPN
ajlm-2900	1	13	m.	m.	PROPN
ajlm-2900	1	14	smith	smith	PROPN
ajlm-2900	1	15	centre	centre	PROPN
ajlm-2900	1	16	for	for	ADP
ajlm-2900	1	17	enteric	enteric	ADJ
ajlm-2900	1	18	diseases	disease	NOUN
ajlm-2900	1	19	,	,	PUNCT
ajlm-2900	1	20	national	national	PROPN
ajlm-2900	1	21	institute	institute	NOUN
ajlm-2900	1	22	for	for	ADP
ajlm-2900	1	23	communicable	communicable	NOUN
ajlm-2900	1	24	diseases	disease	NOUN
ajlm-2900	1	25	,	,	PUNCT
ajlm-2900	1	26	johannesburg	johannesburg	PROPN
ajlm-2900	1	27	,	,	PUNCT
ajlm-2900	1	28	south	south	PROPN
ajlm-2900	1	29	africa	africa	PROPN
ajlm-2900	1	30	department	department	PROPN
ajlm-2900	1	31	of	of	ADP
ajlm-2900	1	32	medical	medical	ADJ
ajlm-2900	1	33	microbiology	microbiology	NOUN
ajlm-2900	1	34	,	,	PUNCT
ajlm-2900	1	35	faculty	faculty	NOUN
ajlm-2900	1	36	of	of	ADP
ajlm-2900	1	37	health	health	NOUN
ajlm-2900	1	38	sciences	sciences	PROPN
ajlm-2900	1	39	,	,	PUNCT
ajlm-2900	1	40	university	university	NOUN
ajlm-2900	1	41	of	of	ADP
ajlm-2900	1	42	pretoria	pretoria	PROPN
ajlm-2900	1	43	,	,	PUNCT
ajlm-2900	1	44	pretoria	pretoria	PROPN
ajlm-2900	1	45	,	,	PUNCT
ajlm-2900	1	46	south	south	PROPN
ajlm-2900	1	47	africa	africa	PROPN
ajlm-2900	1	48	phuti	phuti	PROPN
ajlm-2900	1	49	sekwadi	sekwadi	PROPN
ajlm-2900	1	50	centre	centre	PROPN
ajlm-2900	1	51	for	for	ADP
ajlm-2900	1	52	enteric	enteric	ADJ
ajlm-2900	1	53	diseases	disease	NOUN
ajlm-2900	1	54	,	,	PUNCT
ajlm-2900	1	55	national	national	PROPN
ajlm-2900	1	56	institute	institute	NOUN
ajlm-2900	1	57	for	for	ADP
ajlm-2900	1	58	communicable	communicable	NOUN
ajlm-2900	1	59	diseases	disease	NOUN
ajlm-2900	1	60	,	,	PUNCT
ajlm-2900	1	61	johannesburg	johannesburg	PROPN
ajlm-2900	1	62	,	,	PUNCT
ajlm-2900	1	63	south	south	PROPN
ajlm-2900	1	64	africa	africa	PROPN
ajlm-2900	1	65	hlengiwe	hlengiwe	PROPN
ajlm-2900	1	66	m.	m.	PROPN
ajlm-2900	1	67	ngomane	ngomane	PROPN
ajlm-2900	1	68	centre	centre	PROPN
ajlm-2900	1	69	for	for	ADP
ajlm-2900	1	70	enteric	enteric	ADJ
ajlm-2900	1	71	diseases	disease	NOUN
ajlm-2900	1	72	,	,	PUNCT
ajlm-2900	1	73	national	national	PROPN
ajlm-2900	1	74	institute	institute	NOUN
ajlm-2900	1	75	for	for	ADP
ajlm-2900	1	76	communicable	communicable	NOUN
ajlm-2900	1	77	diseases	disease	NOUN
ajlm-2900	1	78	,	,	PUNCT
ajlm-2900	1	79	johannesburg	johannesburg	PROPN
ajlm-2900	1	80	,	,	PUNCT
ajlm-2900	1	81	south	south	PROPN
ajlm-2900	1	82	africa	africa	PROPN
ajlm-2900	1	83	bolele	bolele	PROPN
ajlm-2900	1	84	disenyeng	disenyeng	PROPN
ajlm-2900	1	85	centre	centre	PROPN
ajlm-2900	1	86	for	for	ADP
ajlm-2900	1	87	enteric	enteric	ADJ
ajlm-2900	1	88	diseases	disease	NOUN
ajlm-2900	1	89	,	,	PUNCT
ajlm-2900	1	90	national	national	PROPN
ajlm-2900	1	91	institute	institute	NOUN
ajlm-2900	1	92	for	for	ADP
ajlm-2900	1	93	communicable	communicable	NOUN
ajlm-2900	1	94	diseases	disease	NOUN
ajlm-2900	1	95	,	,	PUNCT
ajlm-2900	1	96	johannesburg	johannesburg	PROPN
ajlm-2900	1	97	,	,	PUNCT
ajlm-2900	1	98	south	south	PROPN
ajlm-2900	1	99	africa	africa	PROPN
ajlm-2900	1	100	linda	linda	PROPN
ajlm-2900	1	101	k.	k.	PROPN
ajlm-2900	1	102	erasmus	erasmus	PROPN
ajlm-2900	1	103	centre	centre	PROPN
ajlm-2900	1	104	for	for	ADP
ajlm-2900	1	105	enteric	enteric	ADJ
ajlm-2900	1	106	diseases	disease	NOUN
ajlm-2900	1	107	,	,	PUNCT
ajlm-2900	1	108	national	national	PROPN
ajlm-2900	1	109	institute	institute	NOUN
ajlm-2900	1	110	for	for	ADP
ajlm-2900	1	111	communicable	communicable	NOUN
ajlm-2900	1	112	diseases	disease	NOUN
ajlm-2900	1	113	,	,	PUNCT
ajlm-2900	1	114	johannesburg	johannesburg	PROPN
ajlm-2900	1	115	,	,	PUNCT
ajlm-2900	1	116	south	south	PROPN
ajlm-2900	1	117	africa	africa	PROPN
ajlm-2900	1	118	juno	juno	PROPN
ajlm-2900	1	119	thomas	thomas	PROPN
ajlm-2900	1	120	centre	centre	PROPN
ajlm-2900	1	121	for	for	ADP
ajlm-2900	1	122	enteric	enteric	ADJ
ajlm-2900	1	123	diseases	disease	NOUN
ajlm-2900	1	124	,	,	PUNCT
ajlm-2900	1	125	national	national	PROPN
ajlm-2900	1	126	institute	institute	NOUN
ajlm-2900	1	127	for	for	ADP
ajlm-2900	1	128	communicable	communicable	NOUN
ajlm-2900	1	129	diseases	disease	NOUN
ajlm-2900	1	130	,	,	PUNCT
ajlm-2900	1	131	johannesburg	johannesburg	PROPN
ajlm-2900	1	132	,	,	PUNCT
ajlm-2900	1	133	south	south	PROPN
ajlm-2900	1	134	africa	africa	PROPN
ajlm-2900	1	135	dineo	dineo	VERB
ajlm-2900	1	136	bogoshi	bogoshi	PROPN
ajlm-2900	1	137	centre	centre	PROPN
ajlm-2900	1	138	for	for	ADP
ajlm-2900	1	139	enteric	enteric	ADJ
ajlm-2900	1	140	diseases	disease	NOUN
ajlm-2900	1	141	,	,	PUNCT
ajlm-2900	1	142	national	national	PROPN
ajlm-2900	1	143	institute	institute	NOUN
ajlm-2900	1	144	for	for	ADP
ajlm-2900	1	145	communicable	communicable	NOUN
ajlm-2900	1	146	diseases	disease	NOUN
ajlm-2900	1	147	,	,	PUNCT
ajlm-2900	1	148	johannesburg	johannesburg	PROPN
ajlm-2900	1	149	,	,	PUNCT
ajlm-2900	1	150	south	south	PROPN
ajlm-2900	1	151	africa	africa	PROPN
ajlm-2900	1	152	shannon	shannon	PROPN
ajlm-2900	1	153	l.	l.	PROPN
ajlm-2900	1	154	smouse	smouse	PROPN
ajlm-2900	1	155	centre	centre	PROPN
ajlm-2900	1	156	for	for	ADP
ajlm-2900	1	157	enteric	enteric	ADJ
ajlm-2900	1	158	diseases	disease	NOUN
ajlm-2900	1	159	,	,	PUNCT
ajlm-2900	1	160	national	national	PROPN
ajlm-2900	1	161	institute	institute	NOUN
ajlm-2900	1	162	for	for	ADP
ajlm-2900	1	163	communicable	communicable	NOUN
ajlm-2900	1	164	diseases	disease	NOUN
ajlm-2900	1	165	,	,	PUNCT
ajlm-2900	1	166	johannesburg	johannesburg	PROPN
ajlm-2900	1	167	,	,	PUNCT
ajlm-2900	1	168	south	south	PROPN
ajlm-2900	1	169	africa	africa	PROPN
ajlm-2900	1	170	nomsa	nomsa	PROPN
ajlm-2900	1	171	p.	p.	PROPN
ajlm-2900	1	172	tau	tau	PROPN
ajlm-2900	1	173	centre	centre	NOUN
ajlm-2900	1	174	for	for	ADP
ajlm-2900	1	175	enteric	enteric	ADJ
ajlm-2900	1	176	diseases	disease	NOUN
ajlm-2900	1	177	,	,	PUNCT
ajlm-2900	1	178	national	national	PROPN
ajlm-2900	1	179	institute	institute	NOUN
ajlm-2900	1	180	for	for	ADP
ajlm-2900	1	181	communicable	communicable	NOUN
ajlm-2900	1	182	diseases	disease	NOUN
ajlm-2900	1	183	,	,	PUNCT
ajlm-2900	1	184	johannesburg	johannesburg	PROPN
ajlm-2900	1	185	,	,	PUNCT
ajlm-2900	1	186	south	south	PROPN
ajlm-2900	1	187	africa	africa	PROPN
ajlm-2900	1	188	citation	citation	PROPN
ajlm-2900	1	189	smith	smith	PROPN
ajlm-2900	1	190	am	be	AUX
ajlm-2900	1	191	,	,	PUNCT
ajlm-2900	1	192	sekwadi	sekwadi	NOUN
ajlm-2900	1	193	p	p	NOUN
ajlm-2900	1	194	,	,	PUNCT
ajlm-2900	1	195	ngomane	ngomane	PROPN
ajlm-2900	1	196	hm	hm	INTJ
ajlm-2900	1	197	,	,	PUNCT
ajlm-2900	1	198	et	et	PROPN
ajlm-2900	1	199	al	al	PROPN
ajlm-2900	1	200	.	.	PUNCT
ajlm-2900	2	1	whole	whole	ADJ
ajlm-2900	2	2	-	-	PUNCT
ajlm-2900	2	3	genome	genome	NOUN
ajlm-2900	2	4	sequencing	sequencing	NOUN
ajlm-2900	2	5	for	for	ADP
ajlm-2900	2	6	surveillance	surveillance	NOUN
ajlm-2900	2	7	of	of	ADP
ajlm-2900	2	8	salmonella	salmonella	NOUN
ajlm-2900	2	9	at	at	ADP
ajlm-2900	2	10	a	a	DET
ajlm-2900	2	11	public	public	ADJ
ajlm-2900	2	12	health	health	NOUN
ajlm-2900	2	13	institution	institution	NOUN
ajlm-2900	2	14	in	in	ADP
ajlm-2900	2	15	south	south	PROPN
ajlm-2900	2	16	africa	africa	PROPN
ajlm-2900	2	17	.	.	PUNCT
ajlm-2900	3	1	afr	afr	PROPN
ajlm-2900	3	2	j	j	PROPN
ajlm-2900	3	3	lab	lab	PROPN
ajlm-2900	3	4	med	med	PROPN
ajlm-2900	3	5	.	.	PUNCT
ajlm-2900	4	1	2025;14(1	2025;14(1	NUM
ajlm-2900	4	2	)	)	PUNCT
ajlm-2900	4	3	,	,	PUNCT
ajlm-2900	4	4	a2900	a2900	PROPN
ajlm-2900	4	5	.	.	NOUN
ajlm-2900	4	6	https://doi.org/10.4102/ajlm.v14i1.2900	https://doi.org/10.4102/ajlm.v14i1.2900	X
ajlm-2900	4	7	original	original	ADJ
ajlm-2900	4	8	research	research	NOUN
ajlm-2900	4	9	whole	whole	ADJ
ajlm-2900	4	10	-	-	PUNCT
ajlm-2900	4	11	genome	genome	NOUN
ajlm-2900	4	12	sequencing	sequencing	NOUN
ajlm-2900	4	13	for	for	ADP
ajlm-2900	4	14	surveillance	surveillance	NOUN
ajlm-2900	4	15	of	of	ADP
ajlm-2900	4	16	salmonella	salmonella	NOUN
ajlm-2900	4	17	at	at	ADP
ajlm-2900	4	18	a	a	DET
ajlm-2900	4	19	public	public	ADJ
ajlm-2900	4	20	health	health	NOUN
ajlm-2900	4	21	institution	institution	NOUN
ajlm-2900	4	22	in	in	ADP
ajlm-2900	4	23	south	south	PROPN
ajlm-2900	4	24	africa	africa	PROPN
ajlm-2900	4	25	anthony	anthony	PROPN
ajlm-2900	4	26	m.	m.	PROPN
ajlm-2900	4	27	smith	smith	PROPN
ajlm-2900	4	28	,	,	PUNCT
ajlm-2900	4	29	phuti	phuti	PROPN
ajlm-2900	4	30	sekwadi	sekwadi	PROPN
ajlm-2900	4	31	,	,	PUNCT
ajlm-2900	4	32	hlengiwe	hlengiwe	PROPN
ajlm-2900	4	33	m.	m.	NOUN
ajlm-2900	4	34	ngomane	ngomane	PROPN
ajlm-2900	4	35	,	,	PUNCT
ajlm-2900	4	36	bolele	bolele	PROPN
ajlm-2900	4	37	disenyeng	disenyeng	PROPN
ajlm-2900	4	38	,	,	PUNCT
ajlm-2900	4	39	linda	linda	PROPN
ajlm-2900	4	40	k.	k.	PROPN
ajlm-2900	4	41	erasmus	erasmus	PROPN
ajlm-2900	4	42	,	,	PUNCT
ajlm-2900	4	43	juno	juno	PROPN
ajlm-2900	4	44	thomas	thomas	PROPN
ajlm-2900	4	45	,	,	PUNCT
ajlm-2900	4	46	dineo	dineo	VERB
ajlm-2900	4	47	bogoshi	bogoshi	PROPN
ajlm-2900	4	48	,	,	PUNCT
ajlm-2900	4	49	shannon	shannon	PROPN
ajlm-2900	4	50	l.	l.	PROPN
ajlm-2900	4	51	smouse	smouse	PROPN
ajlm-2900	4	52	,	,	PUNCT
ajlm-2900	4	53	nomsa	nomsa	PROPN
ajlm-2900	4	54	p.	p.	PROPN
ajlm-2900	4	55	tau	tau	PROPN
ajlm-2900	4	56	received	receive	VERB
ajlm-2900	4	57	:	:	PUNCT
ajlm-2900	4	58	12	12	NUM
ajlm-2900	4	59	june	june	PROPN
ajlm-2900	4	60	2025	2025	NUM
ajlm-2900	4	61	;	;	PUNCT
ajlm-2900	4	62	accepted	accept	VERB
ajlm-2900	4	63	:	:	PUNCT
ajlm-2900	4	64	11	11	NUM
ajlm-2900	4	65	oct	oct	PROPN
ajlm-2900	4	66	.	.	PROPN
ajlm-2900	4	67	2025	2025	NUM
ajlm-2900	4	68	;	;	PUNCT
ajlm-2900	4	69	published	publish	VERB
ajlm-2900	4	70	:	:	PUNCT
ajlm-2900	4	71	09	09	NUM
ajlm-2900	4	72	dec	dec	PROPN
ajlm-2900	4	73	.	.	PROPN
ajlm-2900	5	1	2025	2025	NUM
ajlm-2900	5	2	copyright	copyright	NOUN
ajlm-2900	5	3	:	:	PUNCT
ajlm-2900	5	4	©	©	PROPN
ajlm-2900	5	5	2025	2025	NUM
ajlm-2900	5	6	.	.	PUNCT
ajlm-2900	6	1	the	the	DET
ajlm-2900	6	2	authors	author	NOUN
ajlm-2900	6	3	.	.	PUNCT
ajlm-2900	7	1	licensee	licensee	NOUN
ajlm-2900	7	2	:	:	PUNCT
ajlm-2900	7	3	aosis	aosis	NOUN
ajlm-2900	7	4	.	.	PUNCT
ajlm-2900	8	1	this	this	DET
ajlm-2900	8	2	work	work	NOUN
ajlm-2900	8	3	is	be	AUX
ajlm-2900	8	4	licensed	license	VERB
ajlm-2900	8	5	under	under	ADP
ajlm-2900	8	6	the	the	DET
ajlm-2900	8	7	creative	creative	ADJ
ajlm-2900	8	8	commons	common	NOUN
ajlm-2900	8	9	attribution	attribution	NOUN
ajlm-2900	8	10	4.0	4.0	NUM
ajlm-2900	8	11	international	international	NOUN
ajlm-2900	8	12	(	(	PUNCT
ajlm-2900	8	13	cc	cc	NOUN
ajlm-2900	8	14	by	by	ADP
ajlm-2900	8	15	4.0	4.0	NUM
ajlm-2900	8	16	)	)	PUNCT
ajlm-2900	8	17	license	license	NOUN
ajlm-2900	8	18	(	(	PUNCT
ajlm-2900	8	19	https://creativecommons.org/licenses/by/4.0/	https://creativecommons.org/licenses/by/4.0/	PROPN
ajlm-2900	8	20	)	)	PUNCT
ajlm-2900	8	21	.	.	PUNCT
ajlm-2900	9	1	abstract	abstract	ADJ
ajlm-2900	9	2	background	background	NOUN
ajlm-2900	9	3	:	:	PUNCT
ajlm-2900	9	4	whole	whole	ADJ
ajlm-2900	9	5	-	-	PUNCT
ajlm-2900	9	6	genome	genome	NOUN
ajlm-2900	9	7	sequencing	sequencing	NOUN
ajlm-2900	9	8	(	(	PUNCT
ajlm-2900	9	9	wgs	wgs	NOUN
ajlm-2900	9	10	)	)	PUNCT
ajlm-2900	9	11	is	be	AUX
ajlm-2900	9	12	transforming	transform	VERB
ajlm-2900	9	13	communicable	communicable	NOUN
ajlm-2900	9	14	disease	disease	NOUN
ajlm-2900	9	15	surveillance	surveillance	NOUN
ajlm-2900	9	16	globally	globally	ADV
ajlm-2900	9	17	.	.	PUNCT
ajlm-2900	10	1	the	the	DET
ajlm-2900	10	2	national	national	PROPN
ajlm-2900	10	3	institute	institute	PROPN
ajlm-2900	10	4	for	for	ADP
ajlm-2900	10	5	communicable	communicable	NOUN
ajlm-2900	10	6	diseases	disease	NOUN
ajlm-2900	10	7	,	,	PUNCT
ajlm-2900	10	8	south	south	PROPN
ajlm-2900	10	9	africa	africa	PROPN
ajlm-2900	10	10	,	,	PUNCT
ajlm-2900	10	11	participates	participate	VERB
ajlm-2900	10	12	in	in	ADP
ajlm-2900	10	13	national	national	ADJ
ajlm-2900	10	14	laboratory	laboratory	NOUN
ajlm-2900	10	15	-	-	PUNCT
ajlm-2900	10	16	based	base	VERB
ajlm-2900	10	17	surveillance	surveillance	NOUN
ajlm-2900	10	18	for	for	ADP
ajlm-2900	10	19	human	human	ADJ
ajlm-2900	10	20	isolates	isolate	NOUN
ajlm-2900	10	21	of	of	ADP
ajlm-2900	10	22	salmonella	salmonella	NOUN
ajlm-2900	10	23	.	.	PUNCT
ajlm-2900	11	1	objective	objective	NOUN
ajlm-2900	11	2	:	:	PUNCT
ajlm-2900	11	3	this	this	DET
ajlm-2900	11	4	study	study	NOUN
ajlm-2900	11	5	was	be	AUX
ajlm-2900	11	6	to	to	PART
ajlm-2900	11	7	investigate	investigate	VERB
ajlm-2900	11	8	human	human	ADJ
ajlm-2900	11	9	salmonella	salmonella	NOUN
ajlm-2900	11	10	isolates	isolate	NOUN
ajlm-2900	11	11	from	from	ADP
ajlm-2900	11	12	south	south	PROPN
ajlm-2900	11	13	africa	africa	PROPN
ajlm-2900	11	14	,	,	PUNCT
ajlm-2900	11	15	2020–2023	2020–2023	NUM
ajlm-2900	11	16	,	,	PUNCT
ajlm-2900	11	17	using	use	VERB
ajlm-2900	11	18	wgs	wgs	NOUN
ajlm-2900	11	19	analysis	analysis	NOUN
ajlm-2900	11	20	.	.	PUNCT
ajlm-2900	12	1	methods	method	NOUN
ajlm-2900	12	2	:	:	PUNCT
ajlm-2900	12	3	wgs	wgs	PROPN
ajlm-2900	12	4	was	be	AUX
ajlm-2900	12	5	performed	perform	VERB
ajlm-2900	12	6	using	use	VERB
ajlm-2900	12	7	illumina	illumina	PROPN
ajlm-2900	12	8	nextseq	nextseq	PROPN
ajlm-2900	12	9	technology	technology	NOUN
ajlm-2900	12	10	.	.	PUNCT
ajlm-2900	13	1	data	datum	NOUN
ajlm-2900	13	2	were	be	AUX
ajlm-2900	13	3	analysed	analyse	VERB
ajlm-2900	13	4	using	use	VERB
ajlm-2900	13	5	multiple	multiple	ADJ
ajlm-2900	13	6	bioinformatics	bioinformatics	NOUN
ajlm-2900	13	7	tools	tool	NOUN
ajlm-2900	13	8	,	,	PUNCT
ajlm-2900	13	9	including	include	VERB
ajlm-2900	13	10	those	those	PRON
ajlm-2900	13	11	available	available	ADJ
ajlm-2900	13	12	at	at	ADP
ajlm-2900	13	13	the	the	DET
ajlm-2900	13	14	center	center	NOUN
ajlm-2900	13	15	for	for	ADP
ajlm-2900	13	16	genomic	genomic	ADJ
ajlm-2900	13	17	epidemiology	epidemiology	NOUN
ajlm-2900	13	18	,	,	PUNCT
ajlm-2900	13	19	pathogenwatch	pathogenwatch	NOUN
ajlm-2900	13	20	and	and	CCONJ
ajlm-2900	13	21	enterobase	enterobase	NOUN
ajlm-2900	13	22	.	.	PUNCT
ajlm-2900	14	1	data	datum	NOUN
ajlm-2900	14	2	analysis	analysis	NOUN
ajlm-2900	14	3	allowed	allow	VERB
ajlm-2900	14	4	for	for	ADP
ajlm-2900	14	5	identification	identification	NOUN
ajlm-2900	14	6	and	and	CCONJ
ajlm-2900	14	7	characterisation	characterisation	NOUN
ajlm-2900	14	8	of	of	ADP
ajlm-2900	14	9	isolates	isolate	NOUN
ajlm-2900	14	10	.	.	PUNCT
ajlm-2900	15	1	core	core	NOUN
ajlm-2900	15	2	-	-	PUNCT
ajlm-2900	15	3	genome	genome	NOUN
ajlm-2900	15	4	multilocus	multilocus	NOUN
ajlm-2900	15	5	sequence	sequence	NOUN
ajlm-2900	15	6	typing	typing	NOUN
ajlm-2900	15	7	was	be	AUX
ajlm-2900	15	8	used	use	VERB
ajlm-2900	15	9	to	to	PART
ajlm-2900	15	10	investigate	investigate	VERB
ajlm-2900	15	11	the	the	DET
ajlm-2900	15	12	phylogeny	phylogeny	NOUN
ajlm-2900	15	13	of	of	ADP
ajlm-2900	15	14	isolates	isolate	NOUN
ajlm-2900	15	15	.	.	PUNCT
ajlm-2900	16	1	results	result	NOUN
ajlm-2900	16	2	:	:	PUNCT
ajlm-2900	16	3	of	of	ADP
ajlm-2900	16	4	the	the	DET
ajlm-2900	16	5	8006	8006	NUM
ajlm-2900	16	6	isolates	isolate	NOUN
ajlm-2900	16	7	of	of	ADP
ajlm-2900	16	8	salmonella	salmonella	NOUN
ajlm-2900	16	9	that	that	PRON
ajlm-2900	16	10	were	be	AUX
ajlm-2900	16	11	analysed	analyse	VERB
ajlm-2900	16	12	using	use	VERB
ajlm-2900	16	13	wgs	wgs	NOUN
ajlm-2900	16	14	,	,	PUNCT
ajlm-2900	16	15	130	130	NUM
ajlm-2900	16	16	distinctive	distinctive	ADJ
ajlm-2900	16	17	serovars	serovar	NOUN
ajlm-2900	16	18	and	and	CCONJ
ajlm-2900	16	19	subspecies	subspecie	NOUN
ajlm-2900	16	20	were	be	AUX
ajlm-2900	16	21	identified	identify	VERB
ajlm-2900	16	22	.	.	PUNCT
ajlm-2900	17	1	salmonella	salmonella	PROPN
ajlm-2900	17	2	enterica	enterica	PROPN
ajlm-2900	17	3	serovar	serovar	PROPN
ajlm-2900	17	4	enteritidis	enteritidis	PROPN
ajlm-2900	17	5	(	(	PUNCT
ajlm-2900	17	6	salmonella	salmonella	NOUN
ajlm-2900	17	7	enteritidis	enteritidi	NOUN
ajlm-2900	17	8	)	)	PUNCT
ajlm-2900	17	9	(	(	PUNCT
ajlm-2900	17	10	4271/8006	4271/8006	NUM
ajlm-2900	17	11	;	;	PUNCT
ajlm-2900	17	12	53.3	53.3	NUM
ajlm-2900	17	13	%	%	NOUN
ajlm-2900	17	14	)	)	PUNCT
ajlm-2900	17	15	and	and	CCONJ
ajlm-2900	17	16	salmonella	salmonella	NOUN
ajlm-2900	17	17	typhimurium	typhimurium	PRON
ajlm-2900	17	18	(	(	PUNCT
ajlm-2900	17	19	1430/8006	1430/8006	NUM
ajlm-2900	17	20	;	;	PUNCT
ajlm-2900	17	21	17.9	17.9	NUM
ajlm-2900	17	22	%	%	NOUN
ajlm-2900	17	23	)	)	PUNCT
ajlm-2900	17	24	were	be	AUX
ajlm-2900	17	25	the	the	DET
ajlm-2900	17	26	most	most	ADV
ajlm-2900	17	27	prevalent	prevalent	ADJ
ajlm-2900	17	28	serovars	serovar	NOUN
ajlm-2900	17	29	,	,	PUNCT
ajlm-2900	17	30	accounting	account	VERB
ajlm-2900	17	31	for	for	ADP
ajlm-2900	17	32	71.2	71.2	NUM
ajlm-2900	17	33	%	%	NOUN
ajlm-2900	17	34	of	of	ADP
ajlm-2900	17	35	all	all	DET
ajlm-2900	17	36	isolates	isolate	NOUN
ajlm-2900	17	37	.	.	PUNCT
ajlm-2900	18	1	this	this	PRON
ajlm-2900	18	2	was	be	AUX
ajlm-2900	18	3	followed	follow	VERB
ajlm-2900	18	4	by	by	ADP
ajlm-2900	18	5	salmonella	salmonella	NOUN
ajlm-2900	18	6	typhi	typhi	VERB
ajlm-2900	18	7	(	(	PUNCT
ajlm-2900	18	8	482/8006	482/8006	NUM
ajlm-2900	18	9	;	;	PUNCT
ajlm-2900	18	10	6.0	6.0	NUM
ajlm-2900	18	11	%	%	NOUN
ajlm-2900	18	12	)	)	PUNCT
ajlm-2900	18	13	.	.	PUNCT
ajlm-2900	19	1	sixteen	sixteen	NUM
ajlm-2900	19	2	per	per	ADP
ajlm-2900	19	3	cent	cent	NOUN
ajlm-2900	19	4	(	(	PUNCT
ajlm-2900	19	5	1288/8006	1288/8006	NUM
ajlm-2900	19	6	)	)	PUNCT
ajlm-2900	19	7	of	of	ADP
ajlm-2900	19	8	isolates	isolate	NOUN
ajlm-2900	19	9	showed	show	VERB
ajlm-2900	19	10	the	the	DET
ajlm-2900	19	11	presence	presence	NOUN
ajlm-2900	19	12	of	of	ADP
ajlm-2900	19	13	antimicrobial	antimicrobial	ADJ
ajlm-2900	19	14	resistance	resistance	NOUN
ajlm-2900	19	15	(	(	PUNCT
ajlm-2900	19	16	amr	amr	NOUN
ajlm-2900	19	17	)	)	PUNCT
ajlm-2900	19	18	determinants	determinant	NOUN
ajlm-2900	19	19	associated	associate	VERB
ajlm-2900	19	20	with	with	ADP
ajlm-2900	19	21	≥	≥	NOUN
ajlm-2900	19	22	2	2	NUM
ajlm-2900	19	23	classes	class	NOUN
ajlm-2900	19	24	of	of	ADP
ajlm-2900	19	25	antimicrobials	antimicrobial	NOUN
ajlm-2900	19	26	.	.	PUNCT
ajlm-2900	20	1	salmonella	salmonella	PROPN
ajlm-2900	20	2	isangi	isangi	PROPN
ajlm-2900	20	3	(	(	PUNCT
ajlm-2900	20	4	167/8006	167/8006	NUM
ajlm-2900	20	5	;	;	PUNCT
ajlm-2900	20	6	2.1	2.1	NUM
ajlm-2900	20	7	%	%	NOUN
ajlm-2900	20	8	)	)	PUNCT
ajlm-2900	20	9	showed	show	VERB
ajlm-2900	20	10	the	the	DET
ajlm-2900	20	11	highest	high	ADJ
ajlm-2900	20	12	prevalence	prevalence	NOUN
ajlm-2900	20	13	of	of	ADP
ajlm-2900	20	14	amr	amr	NOUN
ajlm-2900	20	15	,	,	PUNCT
ajlm-2900	20	16	with	with	ADP
ajlm-2900	20	17	most	most	ADJ
ajlm-2900	20	18	isolates	isolate	NOUN
ajlm-2900	20	19	(	(	PUNCT
ajlm-2900	20	20	159/167	159/167	NUM
ajlm-2900	20	21	;	;	PUNCT
ajlm-2900	20	22	95.2	95.2	NUM
ajlm-2900	20	23	%	%	NOUN
ajlm-2900	20	24	)	)	PUNCT
ajlm-2900	20	25	showing	show	VERB
ajlm-2900	20	26	amr	amr	ADJ
ajlm-2900	20	27	determinants	determinant	NOUN
ajlm-2900	20	28	associated	associate	VERB
ajlm-2900	20	29	with	with	ADP
ajlm-2900	20	30	≥	≥	NOUN
ajlm-2900	20	31	7	7	NUM
ajlm-2900	20	32	classes	class	NOUN
ajlm-2900	20	33	of	of	ADP
ajlm-2900	20	34	antimicrobials	antimicrobial	NOUN
ajlm-2900	20	35	.	.	PUNCT
ajlm-2900	21	1	core	core	NOUN
ajlm-2900	21	2	-	-	PUNCT
ajlm-2900	21	3	genome	genome	NOUN
ajlm-2900	21	4	multilocus	multilocus	NOUN
ajlm-2900	21	5	sequence	sequence	NOUN
ajlm-2900	21	6	typing	typing	NOUN
ajlm-2900	21	7	was	be	AUX
ajlm-2900	21	8	used	use	VERB
ajlm-2900	21	9	to	to	PART
ajlm-2900	21	10	confirm	confirm	VERB
ajlm-2900	21	11	several	several	ADJ
ajlm-2900	21	12	suspected	suspect	VERB
ajlm-2900	21	13	clusters	cluster	NOUN
ajlm-2900	21	14	and	and	CCONJ
ajlm-2900	21	15	outbreaks	outbreak	NOUN
ajlm-2900	21	16	and	and	CCONJ
ajlm-2900	21	17	identified	identify	VERB
ajlm-2900	21	18	additional	additional	ADJ
ajlm-2900	21	19	cryptic	cryptic	ADJ
ajlm-2900	21	20	or	or	CCONJ
ajlm-2900	21	21	unreported	unreported	ADJ
ajlm-2900	21	22	clusters	cluster	NOUN
ajlm-2900	21	23	and	and	CCONJ
ajlm-2900	21	24	outbreaks	outbreak	NOUN
ajlm-2900	21	25	.	.	PUNCT
ajlm-2900	22	1	investigation	investigation	NOUN
ajlm-2900	22	2	of	of	ADP
ajlm-2900	22	3	clusters	cluster	NOUN
ajlm-2900	22	4	and	and	CCONJ
ajlm-2900	22	5	outbreaks	outbreak	NOUN
ajlm-2900	22	6	mostly	mostly	ADV
ajlm-2900	22	7	involved	involve	VERB
ajlm-2900	22	8	salmonella	salmonella	NOUN
ajlm-2900	22	9	enteritidis	enteritidi	NOUN
ajlm-2900	22	10	and	and	CCONJ
ajlm-2900	22	11	salmonella	salmonella	NOUN
ajlm-2900	22	12	typhi	typhi	VERB
ajlm-2900	22	13	.	.	PUNCT
ajlm-2900	23	1	conclusion	conclusion	NOUN
ajlm-2900	23	2	:	:	PUNCT
ajlm-2900	23	3	the	the	DET
ajlm-2900	23	4	implementation	implementation	NOUN
ajlm-2900	23	5	of	of	ADP
ajlm-2900	23	6	wgs	wgs	NOUN
ajlm-2900	23	7	has	have	AUX
ajlm-2900	23	8	enabled	enable	VERB
ajlm-2900	23	9	genomic	genomic	ADJ
ajlm-2900	23	10	surveillance	surveillance	NOUN
ajlm-2900	23	11	of	of	ADP
ajlm-2900	23	12	salmonella	salmonella	NOUN
ajlm-2900	23	13	,	,	PUNCT
ajlm-2900	23	14	which	which	PRON
ajlm-2900	23	15	allows	allow	VERB
ajlm-2900	23	16	for	for	ADP
ajlm-2900	23	17	enhanced	enhanced	ADJ
ajlm-2900	23	18	characterisation	characterisation	NOUN
ajlm-2900	23	19	and	and	CCONJ
ajlm-2900	23	20	amr	amr	ADJ
ajlm-2900	23	21	determination	determination	NOUN
ajlm-2900	23	22	of	of	ADP
ajlm-2900	23	23	isolates	isolate	NOUN
ajlm-2900	23	24	and	and	CCONJ
ajlm-2900	23	25	identification	identification	NOUN
ajlm-2900	23	26	of	of	ADP
ajlm-2900	23	27	clusters	cluster	NOUN
ajlm-2900	23	28	and	and	CCONJ
ajlm-2900	23	29	outbreaks	outbreak	NOUN
ajlm-2900	23	30	,	,	PUNCT
ajlm-2900	23	31	which	which	PRON
ajlm-2900	23	32	informs	inform	VERB
ajlm-2900	23	33	targeted	target	VERB
ajlm-2900	23	34	public	public	ADJ
ajlm-2900	23	35	health	health	NOUN
ajlm-2900	23	36	investigation	investigation	NOUN
ajlm-2900	23	37	and	and	CCONJ
ajlm-2900	23	38	response	response	NOUN
ajlm-2900	23	39	.	.	PUNCT
ajlm-2900	24	1	what	what	PRON
ajlm-2900	24	2	this	this	DET
ajlm-2900	24	3	study	study	NOUN
ajlm-2900	24	4	adds	add	VERB
ajlm-2900	24	5	:	:	PUNCT
ajlm-2900	24	6	this	this	DET
ajlm-2900	24	7	study	study	NOUN
ajlm-2900	24	8	describes	describe	VERB
ajlm-2900	24	9	the	the	DET
ajlm-2900	24	10	population	population	NOUN
ajlm-2900	24	11	structure	structure	NOUN
ajlm-2900	24	12	of	of	ADP
ajlm-2900	24	13	salmonella	salmonella	NOUN
ajlm-2900	24	14	isolated	isolate	VERB
ajlm-2900	24	15	from	from	ADP
ajlm-2900	24	16	humans	human	NOUN
ajlm-2900	24	17	in	in	ADP
ajlm-2900	24	18	south	south	PROPN
ajlm-2900	24	19	africa	africa	PROPN
ajlm-2900	24	20	and	and	CCONJ
ajlm-2900	24	21	hugely	hugely	ADV
ajlm-2900	24	22	contributes	contribute	VERB
ajlm-2900	24	23	to	to	ADP
ajlm-2900	24	24	the	the	DET
ajlm-2900	24	25	available	available	ADJ
ajlm-2900	24	26	salmonella	salmonella	NOUN
ajlm-2900	24	27	wgs	wgs	NOUN
ajlm-2900	24	28	data	datum	NOUN
ajlm-2900	24	29	from	from	ADP
ajlm-2900	24	30	africa	africa	PROPN
ajlm-2900	24	31	.	.	PUNCT
ajlm-2900	25	1	keywords	keyword	NOUN
ajlm-2900	25	2	:	:	PUNCT
ajlm-2900	25	3	salmonella	salmonella	NOUN
ajlm-2900	25	4	;	;	PUNCT
ajlm-2900	25	5	whole	whole	ADJ
ajlm-2900	25	6	-	-	PUNCT
ajlm-2900	25	7	genome	genome	NOUN
ajlm-2900	25	8	sequencing	sequencing	NOUN
ajlm-2900	25	9	;	;	PUNCT
ajlm-2900	25	10	genomics	genomic	NOUN
ajlm-2900	25	11	;	;	PUNCT
ajlm-2900	25	12	surveillance	surveillance	NOUN
ajlm-2900	25	13	;	;	PUNCT
ajlm-2900	25	14	outbreak	outbreak	NOUN
ajlm-2900	25	15	;	;	PUNCT
ajlm-2900	25	16	cluster	cluster	NOUN
ajlm-2900	25	17	;	;	PUNCT
ajlm-2900	25	18	south	south	PROPN
ajlm-2900	25	19	africa	africa	PROPN
ajlm-2900	25	20	;	;	PUNCT
ajlm-2900	25	21	africa	africa	PROPN
ajlm-2900	25	22	;	;	PUNCT
ajlm-2900	25	23	public	public	ADJ
ajlm-2900	25	24	health	health	NOUN
ajlm-2900	25	25	.	.	PUNCT
ajlm-2900	26	1	introduction	introduction	NOUN
ajlm-2900	26	2	salmonella	salmonella	NOUN
ajlm-2900	26	3	remains	remain	VERB
ajlm-2900	26	4	a	a	DET
ajlm-2900	26	5	major	major	ADJ
ajlm-2900	26	6	cause	cause	NOUN
ajlm-2900	26	7	of	of	ADP
ajlm-2900	26	8	human	human	ADJ
ajlm-2900	26	9	disease	disease	NOUN
ajlm-2900	26	10	worldwide	worldwide	ADV
ajlm-2900	26	11	,	,	PUNCT
ajlm-2900	26	12	particularly	particularly	ADV
ajlm-2900	26	13	in	in	ADP
ajlm-2900	26	14	developing	develop	VERB
ajlm-2900	26	15	countries	country	NOUN
ajlm-2900	26	16	,	,	PUNCT
ajlm-2900	26	17	where	where	SCONJ
ajlm-2900	26	18	they	they	PRON
ajlm-2900	26	19	are	be	AUX
ajlm-2900	26	20	a	a	DET
ajlm-2900	26	21	leading	lead	VERB
ajlm-2900	26	22	cause	cause	NOUN
ajlm-2900	26	23	of	of	ADP
ajlm-2900	26	24	morbidity	morbidity	NOUN
ajlm-2900	26	25	and	and	CCONJ
ajlm-2900	26	26	mortality.1,2	mortality.1,2	PROPN
ajlm-2900	26	27	in	in	ADP
ajlm-2900	26	28	africa	africa	PROPN
ajlm-2900	26	29	,	,	PUNCT
ajlm-2900	26	30	salmonella	salmonella	NOUN
ajlm-2900	26	31	disease	disease	NOUN
ajlm-2900	26	32	is	be	AUX
ajlm-2900	26	33	largely	largely	ADV
ajlm-2900	26	34	associated	associate	VERB
ajlm-2900	26	35	with	with	ADP
ajlm-2900	26	36	non	non	ADJ
ajlm-2900	26	37	-	-	ADJ
ajlm-2900	26	38	invasive	invasive	ADJ
ajlm-2900	26	39	gastrointestinal	gastrointestinal	ADJ
ajlm-2900	26	40	infections	infection	NOUN
ajlm-2900	26	41	;	;	PUNCT
ajlm-2900	26	42	however	however	ADV
ajlm-2900	26	43	,	,	PUNCT
ajlm-2900	26	44	a	a	DET
ajlm-2900	26	45	sizable	sizable	ADJ
ajlm-2900	26	46	amount	amount	NOUN
ajlm-2900	26	47	of	of	ADP
ajlm-2900	26	48	the	the	DET
ajlm-2900	26	49	disease	disease	NOUN
ajlm-2900	26	50	is	be	AUX
ajlm-2900	26	51	also	also	ADV
ajlm-2900	26	52	caused	cause	VERB
ajlm-2900	26	53	by	by	ADP
ajlm-2900	26	54	invasive	invasive	ADJ
ajlm-2900	26	55	infections	infection	NOUN
ajlm-2900	26	56	.	.	PUNCT
ajlm-2900	27	1	in	in	ADP
ajlm-2900	27	2	africa	africa	PROPN
ajlm-2900	27	3	,	,	PUNCT
ajlm-2900	27	4	invasive	invasive	ADJ
ajlm-2900	27	5	salmonella	salmonella	NOUN
ajlm-2900	27	6	infections	infection	NOUN
ajlm-2900	27	7	are	be	AUX
ajlm-2900	27	8	associated	associate	VERB
ajlm-2900	27	9	with	with	ADP
ajlm-2900	27	10	both	both	PRON
ajlm-2900	27	11	typhoidal	typhoidal	NOUN
ajlm-2900	27	12	and	and	CCONJ
ajlm-2900	27	13	non	non	ADJ
ajlm-2900	27	14	-	-	ADJ
ajlm-2900	27	15	typhoidal	typhoidal	ADJ
ajlm-2900	27	16	salmonella.3,4	salmonella.3,4	ADJ
ajlm-2900	27	17	surveillance	surveillance	NOUN
ajlm-2900	27	18	and	and	CCONJ
ajlm-2900	27	19	laboratory	laboratory	NOUN
ajlm-2900	27	20	characterisation	characterisation	NOUN
ajlm-2900	27	21	of	of	ADP
ajlm-2900	27	22	salmonella	salmonella	NOUN
ajlm-2900	27	23	is	be	AUX
ajlm-2900	27	24	important	important	ADJ
ajlm-2900	27	25	to	to	PART
ajlm-2900	27	26	monitor	monitor	VERB
ajlm-2900	27	27	prevalence	prevalence	NOUN
ajlm-2900	27	28	and	and	CCONJ
ajlm-2900	27	29	trends	trend	NOUN
ajlm-2900	27	30	in	in	ADP
ajlm-2900	27	31	salmonella	salmonella	NOUN
ajlm-2900	27	32	infections	infection	NOUN
ajlm-2900	27	33	.	.	PUNCT
ajlm-2900	28	1	recent	recent	ADJ
ajlm-2900	28	2	trends	trend	NOUN
ajlm-2900	28	3	in	in	ADP
ajlm-2900	28	4	public	public	ADJ
ajlm-2900	28	5	health	health	NOUN
ajlm-2900	28	6	microbiology	microbiology	NOUN
ajlm-2900	28	7	have	have	AUX
ajlm-2900	28	8	shown	show	VERB
ajlm-2900	28	9	an	an	DET
ajlm-2900	28	10	evolution	evolution	NOUN
ajlm-2900	28	11	towards	towards	ADP
ajlm-2900	28	12	whole	whole	ADJ
ajlm-2900	28	13	-	-	PUNCT
ajlm-2900	28	14	genome	genome	NOUN
ajlm-2900	28	15	sequencing	sequencing	NOUN
ajlm-2900	28	16	(	(	PUNCT
ajlm-2900	28	17	wgs	wgs	NOUN
ajlm-2900	28	18	)	)	PUNCT
ajlm-2900	28	19	as	as	ADP
ajlm-2900	28	20	the	the	DET
ajlm-2900	28	21	methodology	methodology	NOUN
ajlm-2900	28	22	of	of	ADP
ajlm-2900	28	23	choice	choice	NOUN
ajlm-2900	28	24	for	for	ADP
ajlm-2900	28	25	laboratory	laboratory	NOUN
ajlm-2900	28	26	investigation	investigation	NOUN
ajlm-2900	28	27	of	of	ADP
ajlm-2900	28	28	infectious	infectious	ADJ
ajlm-2900	28	29	diseases	disease	NOUN
ajlm-2900	28	30	.	.	PUNCT
ajlm-2900	29	1	globally	globally	ADV
ajlm-2900	29	2	,	,	PUNCT
ajlm-2900	29	3	many	many	ADJ
ajlm-2900	29	4	public	public	ADJ
ajlm-2900	29	5	health	health	NOUN
ajlm-2900	29	6	institutions	institution	NOUN
ajlm-2900	29	7	have	have	AUX
ajlm-2900	29	8	transitioned	transition	VERB
ajlm-2900	29	9	to	to	PART
ajlm-2900	29	10	wgs	wgs	VERB
ajlm-2900	29	11	as	as	ADP
ajlm-2900	29	12	their	their	PRON
ajlm-2900	29	13	primary	primary	ADJ
ajlm-2900	29	14	methodology	methodology	NOUN
ajlm-2900	29	15	for	for	ADP
ajlm-2900	29	16	characterisation	characterisation	NOUN
ajlm-2900	29	17	of	of	ADP
ajlm-2900	29	18	bacterial	bacterial	ADJ
ajlm-2900	29	19	pathogens	pathogen	NOUN
ajlm-2900	29	20	,	,	PUNCT
ajlm-2900	29	21	and	and	CCONJ
ajlm-2900	29	22	this	this	PRON
ajlm-2900	29	23	has	have	AUX
ajlm-2900	29	24	included	include	VERB
ajlm-2900	29	25	salmonella.5,6,7	salmonella.5,6,7	ADV
ajlm-2900	29	26	the	the	DET
ajlm-2900	29	27	world	world	PROPN
ajlm-2900	29	28	health	health	PROPN
ajlm-2900	29	29	organization	organization	NOUN
ajlm-2900	29	30	has	have	AUX
ajlm-2900	29	31	endorsed	endorse	VERB
ajlm-2900	29	32	genomics	genomics	NOUN
ajlm-2900	29	33	and	and	CCONJ
ajlm-2900	29	34	wgs	wgs	NOUN
ajlm-2900	29	35	approaches	approach	NOUN
ajlm-2900	29	36	to	to	PART
ajlm-2900	29	37	investigate	investigate	VERB
ajlm-2900	29	38	various	various	ADJ
ajlm-2900	29	39	communicable	communicable	NOUN
ajlm-2900	29	40	diseases.8,9	diseases.8,9	NOUN
ajlm-2900	29	41	the	the	DET
ajlm-2900	29	42	national	national	PROPN
ajlm-2900	29	43	institute	institute	PROPN
ajlm-2900	29	44	for	for	ADP
ajlm-2900	29	45	communicable	communicable	NOUN
ajlm-2900	29	46	diseases	disease	NOUN
ajlm-2900	29	47	(	(	PUNCT
ajlm-2900	29	48	nicd	nicd	NOUN
ajlm-2900	29	49	)	)	PUNCT
ajlm-2900	29	50	(	(	PUNCT
ajlm-2900	29	51	https://www.nicd.ac.za/	https://www.nicd.ac.za/	X
ajlm-2900	29	52	)	)	PUNCT
ajlm-2900	29	53	is	be	AUX
ajlm-2900	29	54	a	a	DET
ajlm-2900	29	55	national	national	ADJ
ajlm-2900	29	56	public	public	ADJ
ajlm-2900	29	57	health	health	PROPN
ajlm-2900	29	58	institute	institute	PROPN
ajlm-2900	29	59	for	for	ADP
ajlm-2900	29	60	south	south	PROPN
ajlm-2900	29	61	africa	africa	PROPN
ajlm-2900	29	62	,	,	PUNCT
ajlm-2900	29	63	providing	provide	VERB
ajlm-2900	29	64	disease	disease	NOUN
ajlm-2900	29	65	surveillance	surveillance	NOUN
ajlm-2900	29	66	,	,	PUNCT
ajlm-2900	29	67	specialised	specialised	ADJ
ajlm-2900	29	68	diagnostic	diagnostic	ADJ
ajlm-2900	29	69	services	service	NOUN
ajlm-2900	29	70	,	,	PUNCT
ajlm-2900	29	71	outbreak	outbreak	NOUN
ajlm-2900	29	72	response	response	NOUN
ajlm-2900	29	73	,	,	PUNCT
ajlm-2900	29	74	public	public	ADJ
ajlm-2900	29	75	health	health	NOUN
ajlm-2900	29	76	research	research	NOUN
ajlm-2900	29	77	,	,	PUNCT
ajlm-2900	29	78	and	and	CCONJ
ajlm-2900	29	79	capacity	capacity	NOUN
ajlm-2900	29	80	building	building	NOUN
ajlm-2900	29	81	to	to	PART
ajlm-2900	29	82	support	support	VERB
ajlm-2900	29	83	the	the	DET
ajlm-2900	29	84	government	government	NOUN
ajlm-2900	29	85	’s	’s	PART
ajlm-2900	29	86	response	response	NOUN
ajlm-2900	29	87	to	to	ADP
ajlm-2900	29	88	communicable	communicable	NOUN
ajlm-2900	29	89	disease	disease	NOUN
ajlm-2900	29	90	threats	threat	NOUN
ajlm-2900	29	91	.	.	PUNCT
ajlm-2900	30	1	the	the	DET
ajlm-2900	30	2	centre	centre	NOUN
ajlm-2900	30	3	for	for	ADP
ajlm-2900	30	4	enteric	enteric	ADJ
ajlm-2900	30	5	diseases	disease	NOUN
ajlm-2900	30	6	(	(	PUNCT
ajlm-2900	30	7	ced	ced	PROPN
ajlm-2900	30	8	)	)	PUNCT
ajlm-2900	30	9	,	,	PUNCT
ajlm-2900	30	10	nicd	nicd	NOUN
ajlm-2900	30	11	,	,	PUNCT
ajlm-2900	30	12	performs	perform	VERB
ajlm-2900	30	13	surveillance	surveillance	NOUN
ajlm-2900	30	14	on	on	ADP
ajlm-2900	30	15	pathogens	pathogen	NOUN
ajlm-2900	30	16	associated	associate	VERB
ajlm-2900	30	17	with	with	ADP
ajlm-2900	30	18	diarrhoea	diarrhoea	NOUN
ajlm-2900	30	19	and	and	CCONJ
ajlm-2900	30	20	enteric	enteric	ADJ
ajlm-2900	30	21	fever	fever	NOUN
ajlm-2900	30	22	,	,	PUNCT
ajlm-2900	30	23	and	and	CCONJ
ajlm-2900	30	24	is	be	AUX
ajlm-2900	30	25	involved	involve	VERB
ajlm-2900	30	26	with	with	ADP
ajlm-2900	30	27	investigation	investigation	NOUN
ajlm-2900	30	28	and	and	CCONJ
ajlm-2900	30	29	response	response	NOUN
ajlm-2900	30	30	to	to	ADP
ajlm-2900	30	31	enteric	enteric	ADJ
ajlm-2900	30	32	disease	disease	NOUN
ajlm-2900	30	33	outbreaks	outbreak	NOUN
ajlm-2900	30	34	.	.	PUNCT
ajlm-2900	31	1	the	the	DET
ajlm-2900	31	2	ced	ced	PROPN
ajlm-2900	31	3	also	also	ADV
ajlm-2900	31	4	provides	provide	VERB
ajlm-2900	31	5	specialised	specialised	ADJ
ajlm-2900	31	6	reference	reference	NOUN
ajlm-2900	31	7	laboratory	laboratory	NOUN
ajlm-2900	31	8	testing	testing	NOUN
ajlm-2900	31	9	for	for	ADP
ajlm-2900	31	10	enteric	enteric	ADJ
ajlm-2900	31	11	bacteria	bacteria	NOUN
ajlm-2900	31	12	and	and	CCONJ
ajlm-2900	31	13	viruses	virus	NOUN
ajlm-2900	31	14	.	.	PUNCT
ajlm-2900	32	1	in	in	ADP
ajlm-2900	32	2	addition	addition	NOUN
ajlm-2900	32	3	,	,	PUNCT
ajlm-2900	32	4	the	the	DET
ajlm-2900	32	5	ced	ced	PROPN
ajlm-2900	32	6	plays	play	VERB
ajlm-2900	32	7	a	a	DET
ajlm-2900	32	8	part	part	NOUN
ajlm-2900	32	9	in	in	ADP
ajlm-2900	32	10	national	national	ADJ
ajlm-2900	32	11	laboratory	laboratory	NOUN
ajlm-2900	32	12	-	-	PUNCT
ajlm-2900	32	13	based	base	VERB
ajlm-2900	32	14	surveillance	surveillance	NOUN
ajlm-2900	32	15	for	for	ADP
ajlm-2900	32	16	human	human	ADJ
ajlm-2900	32	17	isolates	isolate	NOUN
ajlm-2900	32	18	of	of	ADP
ajlm-2900	32	19	salmonella,10	salmonella,10	NOUN
ajlm-2900	32	20	whereby	whereby	SCONJ
ajlm-2900	32	21	isolates	isolate	NOUN
ajlm-2900	32	22	of	of	ADP
ajlm-2900	32	23	salmonella	salmonella	NOUN
ajlm-2900	32	24	are	be	AUX
ajlm-2900	32	25	received	receive	VERB
ajlm-2900	32	26	from	from	ADP
ajlm-2900	32	27	more	more	ADJ
ajlm-2900	32	28	than	than	ADP
ajlm-2900	32	29	200	200	NUM
ajlm-2900	32	30	public	public	ADJ
ajlm-2900	32	31	and	and	CCONJ
ajlm-2900	32	32	private	private	ADJ
ajlm-2900	32	33	clinical	clinical	ADJ
ajlm-2900	32	34	microbiology	microbiology	NOUN
ajlm-2900	32	35	laboratories	laboratory	NOUN
ajlm-2900	32	36	throughout	throughout	ADP
ajlm-2900	32	37	south	south	PROPN
ajlm-2900	32	38	africa	africa	PROPN
ajlm-2900	32	39	.	.	PUNCT
ajlm-2900	33	1	suspected	suspect	VERB
ajlm-2900	33	2	or	or	CCONJ
ajlm-2900	33	3	laboratory	laboratory	NOUN
ajlm-2900	33	4	-	-	PUNCT
ajlm-2900	33	5	confirmed	confirm	VERB
ajlm-2900	33	6	cases	case	NOUN
ajlm-2900	33	7	of	of	ADP
ajlm-2900	33	8	enteric	enteric	ADJ
ajlm-2900	33	9	fever	fever	NOUN
ajlm-2900	33	10	and	and	CCONJ
ajlm-2900	33	11	clinical	clinical	ADJ
ajlm-2900	33	12	laboratory	laboratory	NOUN
ajlm-2900	33	13	identifications	identification	NOUN
ajlm-2900	33	14	of	of	ADP
ajlm-2900	33	15	salmonella	salmonella	NOUN
ajlm-2900	33	16	isolates	isolate	NOUN
ajlm-2900	33	17	are	be	AUX
ajlm-2900	33	18	‘	'	PUNCT
ajlm-2900	33	19	notifiable	notifiable	ADJ
ajlm-2900	33	20	medical	medical	ADJ
ajlm-2900	33	21	conditions	condition	NOUN
ajlm-2900	33	22	’	'	PUNCT
ajlm-2900	33	23	in	in	ADP
ajlm-2900	33	24	south	south	PROPN
ajlm-2900	33	25	africa	africa	PROPN
ajlm-2900	33	26	and	and	CCONJ
ajlm-2900	33	27	it	it	PRON
ajlm-2900	33	28	is	be	AUX
ajlm-2900	33	29	thus	thus	ADV
ajlm-2900	33	30	mandatory	mandatory	ADJ
ajlm-2900	33	31	for	for	SCONJ
ajlm-2900	33	32	these	these	PRON
ajlm-2900	33	33	to	to	PART
ajlm-2900	33	34	be	be	AUX
ajlm-2900	33	35	reported	report	VERB
ajlm-2900	33	36	to	to	ADP
ajlm-2900	33	37	the	the	DET
ajlm-2900	33	38	department	department	NOUN
ajlm-2900	33	39	of	of	ADP
ajlm-2900	33	40	health.11	health.11	PROPN
ajlm-2900	33	41	the	the	DET
ajlm-2900	33	42	ced	ced	PROPN
ajlm-2900	33	43	performs	perform	VERB
ajlm-2900	33	44	routine	routine	ADJ
ajlm-2900	33	45	wgs	wgs	NOUN
ajlm-2900	33	46	on	on	ADP
ajlm-2900	33	47	all	all	DET
ajlm-2900	33	48	salmonella	salmonella	NOUN
ajlm-2900	33	49	isolates	isolate	NOUN
ajlm-2900	33	50	received	receive	VERB
ajlm-2900	33	51	.	.	PUNCT
ajlm-2900	34	1	whole	whole	ADJ
ajlm-2900	34	2	-	-	PUNCT
ajlm-2900	34	3	genome	genome	NOUN
ajlm-2900	34	4	sequencing	sequence	VERB
ajlm-2900	34	5	data	datum	NOUN
ajlm-2900	34	6	are	be	AUX
ajlm-2900	34	7	analysed	analyse	VERB
ajlm-2900	34	8	to	to	PART
ajlm-2900	34	9	confirm	confirm	VERB
ajlm-2900	34	10	the	the	DET
ajlm-2900	34	11	identification	identification	NOUN
ajlm-2900	34	12	of	of	ADP
ajlm-2900	34	13	isolates	isolate	NOUN
ajlm-2900	34	14	with	with	ADP
ajlm-2900	34	15	respect	respect	NOUN
ajlm-2900	34	16	to	to	ADP
ajlm-2900	34	17	genus	genus	NOUN
ajlm-2900	34	18	,	,	PUNCT
ajlm-2900	34	19	species	specie	NOUN
ajlm-2900	34	20	and	and	CCONJ
ajlm-2900	34	21	serovar	serovar	NOUN
ajlm-2900	34	22	,	,	PUNCT
ajlm-2900	34	23	and	and	CCONJ
ajlm-2900	34	24	further	far	ADV
ajlm-2900	34	25	characterise	characterise	VERB
ajlm-2900	34	26	the	the	DET
ajlm-2900	34	27	isolates	isolate	NOUN
ajlm-2900	34	28	with	with	ADP
ajlm-2900	34	29	respect	respect	NOUN
ajlm-2900	34	30	to	to	ADP
ajlm-2900	34	31	multilocus	multilocus	NOUN
ajlm-2900	34	32	sequence	sequence	NOUN
ajlm-2900	34	33	typing	typing	NOUN
ajlm-2900	34	34	(	(	PUNCT
ajlm-2900	34	35	mlst	mlst	NOUN
ajlm-2900	34	36	)	)	PUNCT
ajlm-2900	34	37	and	and	CCONJ
ajlm-2900	34	38	presence	presence	NOUN
ajlm-2900	34	39	of	of	ADP
ajlm-2900	34	40	antimicrobial	antimicrobial	ADJ
ajlm-2900	34	41	resistance	resistance	NOUN
ajlm-2900	34	42	(	(	PUNCT
ajlm-2900	34	43	amr	amr	NOUN
ajlm-2900	34	44	)	)	PUNCT
ajlm-2900	34	45	determinants	determinant	NOUN
ajlm-2900	34	46	.	.	PUNCT
ajlm-2900	35	1	furthermore	furthermore	ADV
ajlm-2900	35	2	,	,	PUNCT
ajlm-2900	35	3	wgs	wgs	NOUN
ajlm-2900	35	4	data	datum	NOUN
ajlm-2900	35	5	is	be	AUX
ajlm-2900	35	6	also	also	ADV
ajlm-2900	35	7	submitted	submit	VERB
ajlm-2900	35	8	to	to	ADP
ajlm-2900	35	9	the	the	DET
ajlm-2900	35	10	public	public	ADJ
ajlm-2900	35	11	enterobase	enterobase	NOUN
ajlm-2900	35	12	platform	platform	NOUN
ajlm-2900	35	13	(	(	PUNCT
ajlm-2900	35	14	https://enterobase.warwick.ac.uk/species/index/senterica),12	https://enterobase.warwick.ac.uk/species/index/senterica),12	PROPN
ajlm-2900	35	15	where	where	SCONJ
ajlm-2900	35	16	data	datum	NOUN
ajlm-2900	35	17	are	be	AUX
ajlm-2900	35	18	further	far	ADV
ajlm-2900	35	19	interrogated	interrogate	VERB
ajlm-2900	35	20	using	use	VERB
ajlm-2900	35	21	core	core	NOUN
ajlm-2900	35	22	-	-	PUNCT
ajlm-2900	35	23	genome	genome	NOUN
ajlm-2900	35	24	mlst	mlst	NOUN
ajlm-2900	35	25	(	(	PUNCT
ajlm-2900	35	26	cgmlst	cgmlst	NOUN
ajlm-2900	35	27	)	)	PUNCT
ajlm-2900	35	28	to	to	PART
ajlm-2900	35	29	investigate	investigate	VERB
ajlm-2900	35	30	for	for	ADP
ajlm-2900	35	31	clusters	cluster	NOUN
ajlm-2900	35	32	of	of	ADP
ajlm-2900	35	33	genetically	genetically	ADV
ajlm-2900	35	34	related	relate	VERB
ajlm-2900	35	35	cases	case	NOUN
ajlm-2900	35	36	(	(	PUNCT
ajlm-2900	35	37	predictive	predictive	NOUN
ajlm-2900	35	38	of	of	ADP
ajlm-2900	35	39	possible	possible	ADJ
ajlm-2900	35	40	outbreaks	outbreak	NOUN
ajlm-2900	35	41	)	)	PUNCT
ajlm-2900	35	42	and	and	CCONJ
ajlm-2900	35	43	to	to	PART
ajlm-2900	35	44	complement	complement	VERB
ajlm-2900	35	45	epidemiological	epidemiological	ADJ
ajlm-2900	35	46	investigation	investigation	NOUN
ajlm-2900	35	47	of	of	ADP
ajlm-2900	35	48	outbreaks	outbreak	NOUN
ajlm-2900	35	49	.	.	PUNCT
ajlm-2900	36	1	before	before	ADP
ajlm-2900	36	2	implementation	implementation	NOUN
ajlm-2900	36	3	of	of	ADP
ajlm-2900	36	4	wgs	wgs	NOUN
ajlm-2900	36	5	,	,	PUNCT
ajlm-2900	36	6	presumptive	presumptive	ADJ
ajlm-2900	36	7	salmonella	salmonella	NOUN
ajlm-2900	36	8	isolates	isolate	NOUN
ajlm-2900	36	9	were	be	AUX
ajlm-2900	36	10	identified	identify	VERB
ajlm-2900	36	11	using	use	VERB
ajlm-2900	36	12	traditional	traditional	ADJ
ajlm-2900	36	13	phenotypic	phenotypic	ADJ
ajlm-2900	36	14	microbiological	microbiological	ADJ
ajlm-2900	36	15	methods	method	NOUN
ajlm-2900	36	16	,	,	PUNCT
ajlm-2900	36	17	which	which	PRON
ajlm-2900	36	18	included	include	VERB
ajlm-2900	36	19	vitek	vitek	NOUN
ajlm-2900	36	20	identification	identification	NOUN
ajlm-2900	36	21	and	and	CCONJ
ajlm-2900	36	22	serotyping	serotyping	NOUN
ajlm-2900	36	23	performed	perform	VERB
ajlm-2900	36	24	according	accord	VERB
ajlm-2900	36	25	to	to	ADP
ajlm-2900	36	26	the	the	DET
ajlm-2900	36	27	white	white	ADJ
ajlm-2900	36	28	-	-	PUNCT
ajlm-2900	36	29	kauffmann	kauffmann	NOUN
ajlm-2900	36	30	-	-	PUNCT
ajlm-2900	36	31	le	le	ADJ
ajlm-2900	36	32	minor	minor	ADJ
ajlm-2900	36	33	scheme.13,14	scheme.13,14	NOUN
ajlm-2900	36	34	this	this	PRON
ajlm-2900	36	35	would	would	AUX
ajlm-2900	36	36	have	have	AUX
ajlm-2900	36	37	been	be	AUX
ajlm-2900	36	38	followed	follow	VERB
ajlm-2900	36	39	by	by	ADP
ajlm-2900	36	40	molecular	molecular	ADJ
ajlm-2900	36	41	subtyping	subtyping	NOUN
ajlm-2900	36	42	of	of	ADP
ajlm-2900	36	43	isolates	isolate	NOUN
ajlm-2900	36	44	,	,	PUNCT
ajlm-2900	36	45	on	on	ADP
ajlm-2900	36	46	selected	select	VERB
ajlm-2900	36	47	isolates	isolate	NOUN
ajlm-2900	36	48	only	only	ADV
ajlm-2900	36	49	(	(	PUNCT
ajlm-2900	36	50	mostly	mostly	ADV
ajlm-2900	36	51	associated	associate	VERB
ajlm-2900	36	52	with	with	ADP
ajlm-2900	36	53	outbreak	outbreak	NOUN
ajlm-2900	36	54	investigations	investigation	NOUN
ajlm-2900	36	55	)	)	PUNCT
ajlm-2900	36	56	,	,	PUNCT
ajlm-2900	36	57	using	use	VERB
ajlm-2900	36	58	methods	method	NOUN
ajlm-2900	36	59	such	such	ADJ
ajlm-2900	36	60	as	as	ADP
ajlm-2900	36	61	pulsed	pulse	VERB
ajlm-2900	36	62	-	-	PUNCT
ajlm-2900	36	63	field	field	NOUN
ajlm-2900	36	64	gel	gel	NOUN
ajlm-2900	36	65	electrophoresis	electrophoresis	NOUN
ajlm-2900	36	66	analysis	analysis	NOUN
ajlm-2900	36	67	and	and	CCONJ
ajlm-2900	36	68	multiple	multiple	ADJ
ajlm-2900	36	69	-	-	PUNCT
ajlm-2900	36	70	locus	locus	ADJ
ajlm-2900	36	71	variable	variable	ADJ
ajlm-2900	36	72	-	-	PUNCT
ajlm-2900	36	73	number	number	NOUN
ajlm-2900	36	74	tandem	tandem	NOUN
ajlm-2900	36	75	-	-	PUNCT
ajlm-2900	36	76	repeats	repeat	NOUN
ajlm-2900	36	77	analysis.13,14,15,16	analysis.13,14,15,16	PROPN
ajlm-2900	36	78	in	in	ADP
ajlm-2900	36	79	2020	2020	NUM
ajlm-2900	36	80	,	,	PUNCT
ajlm-2900	36	81	ced	ced	PROPN
ajlm-2900	36	82	implemented	implement	VERB
ajlm-2900	36	83	wgs	wgs	NOUN
ajlm-2900	36	84	for	for	ADP
ajlm-2900	36	85	routine	routine	ADJ
ajlm-2900	36	86	surveillance	surveillance	NOUN
ajlm-2900	36	87	of	of	ADP
ajlm-2900	36	88	clinical	clinical	ADJ
ajlm-2900	36	89	isolates	isolate	NOUN
ajlm-2900	36	90	of	of	ADP
ajlm-2900	36	91	salmonella	salmonella	NOUN
ajlm-2900	36	92	.	.	PUNCT
ajlm-2900	37	1	we	we	PRON
ajlm-2900	37	2	now	now	ADV
ajlm-2900	37	3	present	present	VERB
ajlm-2900	37	4	the	the	DET
ajlm-2900	37	5	results	result	NOUN
ajlm-2900	37	6	of	of	ADP
ajlm-2900	37	7	this	this	DET
ajlm-2900	37	8	wgs	wgs	NOUN
ajlm-2900	37	9	implementation	implementation	NOUN
ajlm-2900	37	10	and	and	CCONJ
ajlm-2900	37	11	summarise	summarise	VERB
ajlm-2900	37	12	key	key	ADJ
ajlm-2900	37	13	findings	finding	NOUN
ajlm-2900	37	14	following	follow	VERB
ajlm-2900	37	15	analysis	analysis	NOUN
ajlm-2900	37	16	of	of	ADP
ajlm-2900	37	17	isolates	isolate	NOUN
ajlm-2900	37	18	from	from	ADP
ajlm-2900	37	19	2020	2020	NUM
ajlm-2900	37	20	to	to	ADP
ajlm-2900	37	21	2023	2023	NUM
ajlm-2900	37	22	.	.	PUNCT
ajlm-2900	38	1	we	we	PRON
ajlm-2900	38	2	report	report	VERB
ajlm-2900	38	3	on	on	ADP
ajlm-2900	38	4	the	the	DET
ajlm-2900	38	5	number	number	NOUN
ajlm-2900	38	6	of	of	ADP
ajlm-2900	38	7	isolates	isolate	NOUN
ajlm-2900	38	8	sequenced	sequence	VERB
ajlm-2900	38	9	,	,	PUNCT
ajlm-2900	38	10	predominant	predominant	ADJ
ajlm-2900	38	11	serovars	serovar	NOUN
ajlm-2900	38	12	and	and	CCONJ
ajlm-2900	38	13	subspecies	subspecie	NOUN
ajlm-2900	38	14	identified	identify	VERB
ajlm-2900	38	15	,	,	PUNCT
ajlm-2900	38	16	significant	significant	ADJ
ajlm-2900	38	17	strains	strain	NOUN
ajlm-2900	38	18	identified	identify	VERB
ajlm-2900	38	19	,	,	PUNCT
ajlm-2900	38	20	notable	notable	ADJ
ajlm-2900	38	21	amr	amr	ADJ
ajlm-2900	38	22	profiles	profile	NOUN
ajlm-2900	38	23	identified	identify	VERB
ajlm-2900	38	24	,	,	PUNCT
ajlm-2900	38	25	clusters	cluster	NOUN
ajlm-2900	38	26	identified	identify	VERB
ajlm-2900	38	27	,	,	PUNCT
ajlm-2900	38	28	and	and	CCONJ
ajlm-2900	38	29	outbreaks	outbreak	NOUN
ajlm-2900	38	30	investigated	investigate	VERB
ajlm-2900	38	31	.	.	PUNCT
ajlm-2900	39	1	methods	method	NOUN
ajlm-2900	39	2	ethical	ethical	ADJ
ajlm-2900	39	3	considerations	consideration	NOUN
ajlm-2900	39	4	ethical	ethical	ADJ
ajlm-2900	39	5	approval	approval	NOUN
ajlm-2900	39	6	to	to	PART
ajlm-2900	39	7	perform	perform	VERB
ajlm-2900	39	8	surveillance	surveillance	NOUN
ajlm-2900	39	9	activities	activity	NOUN
ajlm-2900	39	10	and	and	CCONJ
ajlm-2900	39	11	laboratory	laboratory	NOUN
ajlm-2900	39	12	analysis	analysis	NOUN
ajlm-2900	39	13	on	on	ADP
ajlm-2900	39	14	clinical	clinical	ADJ
ajlm-2900	39	15	isolates	isolate	NOUN
ajlm-2900	39	16	of	of	ADP
ajlm-2900	39	17	salmonella	salmonella	NOUN
ajlm-2900	39	18	was	be	AUX
ajlm-2900	39	19	obtained	obtain	VERB
ajlm-2900	39	20	from	from	ADP
ajlm-2900	39	21	the	the	DET
ajlm-2900	39	22	human	human	ADJ
ajlm-2900	39	23	research	research	PROPN
ajlm-2900	39	24	ethics	ethic	NOUN
ajlm-2900	39	25	committee	committee	PROPN
ajlm-2900	39	26	of	of	ADP
ajlm-2900	39	27	the	the	DET
ajlm-2900	39	28	university	university	NOUN
ajlm-2900	39	29	of	of	ADP
ajlm-2900	39	30	the	the	DET
ajlm-2900	39	31	witwatersrand	witwatersrand	NOUN
ajlm-2900	39	32	,	,	PUNCT
ajlm-2900	39	33	johannesburg	johannesburg	PROPN
ajlm-2900	39	34	,	,	PUNCT
ajlm-2900	39	35	south	south	PROPN
ajlm-2900	39	36	africa	africa	PROPN
ajlm-2900	39	37	(	(	PUNCT
ajlm-2900	39	38	protocol	protocol	NOUN
ajlm-2900	39	39	reference	reference	NOUN
ajlm-2900	39	40	numbers	number	NOUN
ajlm-2900	39	41	:	:	PUNCT
ajlm-2900	39	42	m160667	m160667	NOUN
ajlm-2900	39	43	,	,	PUNCT
ajlm-2900	39	44	m1809107	m1809107	PROPN
ajlm-2900	39	45	,	,	PUNCT
ajlm-2900	39	46	m210752	m210752	NUM
ajlm-2900	39	47	,	,	PUNCT
ajlm-2900	39	48	m230985	m230985	NOUN
ajlm-2900	39	49	)	)	PUNCT
ajlm-2900	39	50	.	.	PUNCT
ajlm-2900	40	1	databases	database	NOUN
ajlm-2900	40	2	where	where	SCONJ
ajlm-2900	40	3	patient	patient	ADJ
ajlm-2900	40	4	data	datum	NOUN
ajlm-2900	40	5	are	be	AUX
ajlm-2900	40	6	stored	store	VERB
ajlm-2900	40	7	are	be	AUX
ajlm-2900	40	8	password	password	NOUN
ajlm-2900	40	9	protected	protect	VERB
ajlm-2900	40	10	and	and	CCONJ
ajlm-2900	40	11	the	the	DET
ajlm-2900	40	12	patient	patient	ADJ
ajlm-2900	40	13	identifiers	identifier	NOUN
ajlm-2900	40	14	were	be	AUX
ajlm-2900	40	15	removed	remove	VERB
ajlm-2900	40	16	from	from	ADP
ajlm-2900	40	17	genomic	genomic	ADJ
ajlm-2900	40	18	data	datum	NOUN
ajlm-2900	40	19	shared	share	VERB
ajlm-2900	40	20	at	at	ADP
ajlm-2900	40	21	public	public	ADJ
ajlm-2900	40	22	repositories	repository	NOUN
ajlm-2900	40	23	.	.	PUNCT
ajlm-2900	41	1	surveillance	surveillance	NOUN
ajlm-2900	41	2	for	for	ADP
ajlm-2900	41	3	clinical	clinical	ADJ
ajlm-2900	41	4	isolates	isolate	NOUN
ajlm-2900	41	5	of	of	ADP
ajlm-2900	41	6	salmonella	salmonella	NOUN
ajlm-2900	41	7	in	in	ADP
ajlm-2900	41	8	south	south	PROPN
ajlm-2900	41	9	africa	africa	PROPN
ajlm-2900	41	10	this	this	DET
ajlm-2900	41	11	project	project	NOUN
ajlm-2900	41	12	started	start	VERB
ajlm-2900	41	13	on	on	ADP
ajlm-2900	41	14	01	01	NUM
ajlm-2900	41	15	january	january	PROPN
ajlm-2900	41	16	2020	2020	NUM
ajlm-2900	41	17	and	and	CCONJ
ajlm-2900	41	18	ended	end	VERB
ajlm-2900	41	19	on	on	ADP
ajlm-2900	41	20	31	31	NUM
ajlm-2900	41	21	december	december	PROPN
ajlm-2900	41	22	2023	2023	NUM
ajlm-2900	41	23	.	.	PUNCT
ajlm-2900	42	1	the	the	DET
ajlm-2900	42	2	nicd	nicd	PROPN
ajlm-2900	42	3	is	be	AUX
ajlm-2900	42	4	a	a	DET
ajlm-2900	42	5	national	national	ADJ
ajlm-2900	42	6	public	public	ADJ
ajlm-2900	42	7	health	health	PROPN
ajlm-2900	42	8	institute	institute	PROPN
ajlm-2900	42	9	for	for	ADP
ajlm-2900	42	10	south	south	PROPN
ajlm-2900	42	11	africa	africa	PROPN
ajlm-2900	42	12	,	,	PUNCT
ajlm-2900	42	13	providing	provide	VERB
ajlm-2900	42	14	disease	disease	NOUN
ajlm-2900	42	15	surveillance	surveillance	NOUN
ajlm-2900	42	16	,	,	PUNCT
ajlm-2900	42	17	specialised	specialised	ADJ
ajlm-2900	42	18	diagnostic	diagnostic	ADJ
ajlm-2900	42	19	services	service	NOUN
ajlm-2900	42	20	,	,	PUNCT
ajlm-2900	42	21	outbreak	outbreak	NOUN
ajlm-2900	42	22	response	response	NOUN
ajlm-2900	42	23	,	,	PUNCT
ajlm-2900	42	24	public	public	ADJ
ajlm-2900	42	25	health	health	NOUN
ajlm-2900	42	26	research	research	NOUN
ajlm-2900	42	27	,	,	PUNCT
ajlm-2900	42	28	and	and	CCONJ
ajlm-2900	42	29	capacity	capacity	NOUN
ajlm-2900	42	30	building	building	NOUN
ajlm-2900	42	31	to	to	PART
ajlm-2900	42	32	support	support	VERB
ajlm-2900	42	33	the	the	DET
ajlm-2900	42	34	government	government	NOUN
ajlm-2900	42	35	’s	’s	PART
ajlm-2900	42	36	response	response	NOUN
ajlm-2900	42	37	to	to	ADP
ajlm-2900	42	38	communicable	communicable	NOUN
ajlm-2900	42	39	disease	disease	NOUN
ajlm-2900	42	40	threats	threat	NOUN
ajlm-2900	42	41	.	.	PUNCT
ajlm-2900	43	1	the	the	DET
ajlm-2900	43	2	ced	ced	PROPN
ajlm-2900	43	3	plays	play	VERB
ajlm-2900	43	4	a	a	DET
ajlm-2900	43	5	part	part	NOUN
ajlm-2900	43	6	in	in	ADP
ajlm-2900	43	7	national	national	ADJ
ajlm-2900	43	8	laboratory	laboratory	NOUN
ajlm-2900	43	9	-	-	PUNCT
ajlm-2900	43	10	based	base	VERB
ajlm-2900	43	11	surveillance	surveillance	NOUN
ajlm-2900	43	12	for	for	ADP
ajlm-2900	43	13	human	human	ADJ
ajlm-2900	43	14	isolates	isolate	NOUN
ajlm-2900	43	15	of	of	ADP
ajlm-2900	43	16	salmonella	salmonella	NOUN
ajlm-2900	43	17	.	.	PUNCT
ajlm-2900	44	1	isolates	isolate	NOUN
ajlm-2900	44	2	were	be	AUX
ajlm-2900	44	3	received	receive	VERB
ajlm-2900	44	4	from	from	ADP
ajlm-2900	44	5	more	more	ADJ
ajlm-2900	44	6	than	than	ADP
ajlm-2900	44	7	200	200	NUM
ajlm-2900	44	8	public	public	ADJ
ajlm-2900	44	9	and	and	CCONJ
ajlm-2900	44	10	private	private	ADJ
ajlm-2900	44	11	clinical	clinical	ADJ
ajlm-2900	44	12	microbiology	microbiology	NOUN
ajlm-2900	44	13	laboratories	laboratory	NOUN
ajlm-2900	44	14	throughout	throughout	ADP
ajlm-2900	44	15	the	the	DET
ajlm-2900	44	16	country	country	NOUN
ajlm-2900	44	17	.	.	PUNCT
ajlm-2900	45	1	after	after	ADP
ajlm-2900	45	2	salmonella	salmonella	NOUN
ajlm-2900	45	3	identification	identification	NOUN
ajlm-2900	45	4	at	at	ADP
ajlm-2900	45	5	laboratories	laboratory	NOUN
ajlm-2900	45	6	,	,	PUNCT
ajlm-2900	45	7	isolates	isolate	NOUN
ajlm-2900	45	8	were	be	AUX
ajlm-2900	45	9	usually	usually	ADV
ajlm-2900	45	10	received	receive	VERB
ajlm-2900	45	11	at	at	ADP
ajlm-2900	45	12	the	the	DET
ajlm-2900	45	13	ced	ced	NOUN
ajlm-2900	45	14	within	within	ADP
ajlm-2900	45	15	1–4	1–4	NUM
ajlm-2900	45	16	weeks	week	NOUN
ajlm-2900	45	17	.	.	PUNCT
ajlm-2900	46	1	following	follow	VERB
ajlm-2900	46	2	receipt	receipt	NOUN
ajlm-2900	46	3	at	at	ADP
ajlm-2900	46	4	the	the	DET
ajlm-2900	46	5	ced	ced	PROPN
ajlm-2900	46	6	,	,	PUNCT
ajlm-2900	46	7	isolates	isolate	NOUN
ajlm-2900	46	8	were	be	AUX
ajlm-2900	46	9	immediately	immediately	ADV
ajlm-2900	46	10	processed	process	VERB
ajlm-2900	46	11	for	for	ADP
ajlm-2900	46	12	wgs	wgs	NOUN
ajlm-2900	46	13	analysis	analysis	NOUN
ajlm-2900	46	14	(	(	PUNCT
ajlm-2900	46	15	as	as	SCONJ
ajlm-2900	46	16	described	describe	VERB
ajlm-2900	46	17	below	below	ADP
ajlm-2900	46	18	)	)	PUNCT
ajlm-2900	46	19	,	,	PUNCT
ajlm-2900	46	20	a	a	DET
ajlm-2900	46	21	process	process	NOUN
ajlm-2900	46	22	which	which	PRON
ajlm-2900	46	23	is	be	AUX
ajlm-2900	46	24	usually	usually	ADV
ajlm-2900	46	25	completed	complete	VERB
ajlm-2900	46	26	within	within	ADP
ajlm-2900	46	27	2–3	2–3	NUM
ajlm-2900	46	28	weeks	week	NOUN
ajlm-2900	46	29	.	.	PUNCT
ajlm-2900	47	1	metadata	metadata	NOUN
ajlm-2900	47	2	and	and	CCONJ
ajlm-2900	47	3	epidemiological	epidemiological	ADJ
ajlm-2900	47	4	investigation	investigation	NOUN
ajlm-2900	47	5	salmonella	salmonella	NOUN
ajlm-2900	47	6	isolates	isolate	NOUN
ajlm-2900	47	7	were	be	AUX
ajlm-2900	47	8	received	receive	VERB
ajlm-2900	47	9	with	with	ADP
ajlm-2900	47	10	information	information	NOUN
ajlm-2900	47	11	related	relate	VERB
ajlm-2900	47	12	to	to	ADP
ajlm-2900	47	13	basic	basic	ADJ
ajlm-2900	47	14	metadata	metadata	NOUN
ajlm-2900	47	15	,	,	PUNCT
ajlm-2900	47	16	including	include	VERB
ajlm-2900	47	17	details	detail	NOUN
ajlm-2900	47	18	of	of	ADP
ajlm-2900	47	19	the	the	DET
ajlm-2900	47	20	patient	patient	NOUN
ajlm-2900	47	21	,	,	PUNCT
ajlm-2900	47	22	place	place	NOUN
ajlm-2900	47	23	of	of	ADP
ajlm-2900	47	24	residence	residence	NOUN
ajlm-2900	47	25	and	and	CCONJ
ajlm-2900	47	26	specimen	speciman	NOUN
ajlm-2900	47	27	collection	collection	NOUN
ajlm-2900	47	28	date	date	NOUN
ajlm-2900	47	29	;	;	PUNCT
ajlm-2900	48	1	data	datum	NOUN
ajlm-2900	48	2	all	all	PRON
ajlm-2900	48	3	obtained	obtain	VERB
ajlm-2900	48	4	from	from	ADP
ajlm-2900	48	5	laboratory	laboratory	NOUN
ajlm-2900	48	6	request	request	NOUN
ajlm-2900	48	7	forms	form	NOUN
ajlm-2900	48	8	.	.	PUNCT
ajlm-2900	49	1	in	in	ADP
ajlm-2900	49	2	some	some	DET
ajlm-2900	49	3	situations	situation	NOUN
ajlm-2900	49	4	,	,	PUNCT
ajlm-2900	49	5	such	such	ADJ
ajlm-2900	49	6	as	as	ADP
ajlm-2900	49	7	cases	case	NOUN
ajlm-2900	49	8	of	of	ADP
ajlm-2900	49	9	enteric	enteric	ADJ
ajlm-2900	49	10	fever	fever	NOUN
ajlm-2900	49	11	,	,	PUNCT
ajlm-2900	49	12	cases	case	NOUN
ajlm-2900	49	13	associated	associate	VERB
ajlm-2900	49	14	with	with	ADP
ajlm-2900	49	15	outbreak	outbreak	NOUN
ajlm-2900	49	16	investigations	investigation	NOUN
ajlm-2900	49	17	and	and	CCONJ
ajlm-2900	49	18	cases	case	NOUN
ajlm-2900	49	19	from	from	ADP
ajlm-2900	49	20	some	some	DET
ajlm-2900	49	21	enhanced	enhance	VERB
ajlm-2900	49	22	surveillance	surveillance	NOUN
ajlm-2900	49	23	sites	site	NOUN
ajlm-2900	49	24	;	;	PUNCT
ajlm-2900	49	25	patients	patient	NOUN
ajlm-2900	49	26	were	be	AUX
ajlm-2900	49	27	followed	follow	VERB
ajlm-2900	49	28	up	up	ADP
ajlm-2900	49	29	to	to	PART
ajlm-2900	49	30	obtain	obtain	VERB
ajlm-2900	49	31	more	more	ADV
ajlm-2900	49	32	detailed	detailed	ADJ
ajlm-2900	49	33	information	information	NOUN
ajlm-2900	49	34	and	and	CCONJ
ajlm-2900	49	35	case	case	NOUN
ajlm-2900	49	36	investigation	investigation	NOUN
ajlm-2900	49	37	forms	form	NOUN
ajlm-2900	49	38	were	be	AUX
ajlm-2900	49	39	completed	complete	VERB
ajlm-2900	49	40	.	.	PUNCT
ajlm-2900	50	1	clinical	clinical	ADJ
ajlm-2900	50	2	laboratory	laboratory	NOUN
ajlm-2900	50	3	identifications	identification	NOUN
ajlm-2900	50	4	of	of	ADP
ajlm-2900	50	5	salmonella	salmonella	NOUN
ajlm-2900	50	6	isolates	isolate	NOUN
ajlm-2900	50	7	are	be	AUX
ajlm-2900	50	8	‘	'	PUNCT
ajlm-2900	50	9	notifiable	notifiable	ADJ
ajlm-2900	50	10	medical	medical	ADJ
ajlm-2900	50	11	conditions	condition	NOUN
ajlm-2900	50	12	’	'	PUNCT
ajlm-2900	50	13	in	in	ADP
ajlm-2900	50	14	south	south	PROPN
ajlm-2900	50	15	africa	africa	PROPN
ajlm-2900	50	16	,	,	PUNCT
ajlm-2900	50	17	so	so	SCONJ
ajlm-2900	50	18	it	it	PRON
ajlm-2900	50	19	is	be	AUX
ajlm-2900	50	20	mandatory	mandatory	ADJ
ajlm-2900	50	21	for	for	SCONJ
ajlm-2900	50	22	these	these	PRON
ajlm-2900	50	23	to	to	PART
ajlm-2900	50	24	be	be	AUX
ajlm-2900	50	25	reported	report	VERB
ajlm-2900	50	26	to	to	ADP
ajlm-2900	50	27	the	the	DET
ajlm-2900	50	28	department	department	PROPN
ajlm-2900	50	29	of	of	ADP
ajlm-2900	50	30	health	health	PROPN
ajlm-2900	50	31	.	.	PUNCT
ajlm-2900	51	1	receipt	receipt	NOUN
ajlm-2900	51	2	of	of	ADP
ajlm-2900	51	3	bacterial	bacterial	ADJ
ajlm-2900	51	4	cultures	culture	NOUN
ajlm-2900	51	5	and	and	CCONJ
ajlm-2900	51	6	phenotypic	phenotypic	ADJ
ajlm-2900	51	7	characterisation	characterisation	NOUN
ajlm-2900	51	8	the	the	DET
ajlm-2900	51	9	ced	ced	PROPN
ajlm-2900	51	10	received	receive	VERB
ajlm-2900	51	11	and	and	CCONJ
ajlm-2900	51	12	processed	process	VERB
ajlm-2900	51	13	isolates	isolate	NOUN
ajlm-2900	51	14	using	use	VERB
ajlm-2900	51	15	methodology	methodology	NOUN
ajlm-2900	51	16	as	as	SCONJ
ajlm-2900	51	17	previously	previously	ADV
ajlm-2900	51	18	described.17,18	described.17,18	NOUN
ajlm-2900	51	19	methodology	methodology	NOUN
ajlm-2900	51	20	is	be	AUX
ajlm-2900	51	21	briefly	briefly	ADV
ajlm-2900	51	22	described	describe	VERB
ajlm-2900	51	23	as	as	ADP
ajlm-2900	51	24	follows	follow	VERB
ajlm-2900	51	25	.	.	PUNCT
ajlm-2900	52	1	following	follow	VERB
ajlm-2900	52	2	receipt	receipt	NOUN
ajlm-2900	52	3	of	of	ADP
ajlm-2900	52	4	presumptive	presumptive	ADJ
ajlm-2900	52	5	isolates	isolate	NOUN
ajlm-2900	52	6	on	on	ADP
ajlm-2900	52	7	dorset	dorset	NOUN
ajlm-2900	52	8	-	-	PUNCT
ajlm-2900	52	9	egg	egg	NOUN
ajlm-2900	52	10	transport	transport	NOUN
ajlm-2900	52	11	media	medium	NOUN
ajlm-2900	52	12	(	(	PUNCT
ajlm-2900	52	13	diagnostic	diagnostic	ADJ
ajlm-2900	52	14	media	medium	NOUN
ajlm-2900	52	15	products	product	NOUN
ajlm-2900	52	16	,	,	PUNCT
ajlm-2900	52	17	national	national	PROPN
ajlm-2900	52	18	health	health	PROPN
ajlm-2900	52	19	laboratory	laboratory	PROPN
ajlm-2900	52	20	service	service	PROPN
ajlm-2900	52	21	,	,	PUNCT
ajlm-2900	52	22	johannesburg	johannesburg	PROPN
ajlm-2900	52	23	,	,	PUNCT
ajlm-2900	52	24	south	south	PROPN
ajlm-2900	52	25	africa	africa	PROPN
ajlm-2900	52	26	)	)	PUNCT
ajlm-2900	52	27	,	,	PUNCT
ajlm-2900	52	28	isolates	isolate	NOUN
ajlm-2900	52	29	are	be	AUX
ajlm-2900	52	30	sub	sub	ADJ
ajlm-2900	52	31	-	-	ADJ
ajlm-2900	52	32	cultured	cultured	ADJ
ajlm-2900	52	33	onto	onto	ADP
ajlm-2900	52	34	5	5	NUM
ajlm-2900	52	35	%	%	NOUN
ajlm-2900	52	36	blood	blood	NOUN
ajlm-2900	52	37	agar	agar	NOUN
ajlm-2900	52	38	(	(	PUNCT
ajlm-2900	52	39	diagnostic	diagnostic	ADJ
ajlm-2900	52	40	media	medium	NOUN
ajlm-2900	52	41	products	product	NOUN
ajlm-2900	52	42	)	)	PUNCT
ajlm-2900	52	43	to	to	PART
ajlm-2900	52	44	check	check	VERB
ajlm-2900	52	45	for	for	ADP
ajlm-2900	52	46	viability	viability	NOUN
ajlm-2900	52	47	and	and	CCONJ
ajlm-2900	52	48	purity	purity	NOUN
ajlm-2900	52	49	,	,	PUNCT
ajlm-2900	52	50	following	follow	VERB
ajlm-2900	52	51	which	which	PRON
ajlm-2900	52	52	the	the	DET
ajlm-2900	52	53	isolates	isolate	NOUN
ajlm-2900	52	54	are	be	AUX
ajlm-2900	52	55	processed	process	VERB
ajlm-2900	52	56	to	to	PART
ajlm-2900	52	57	extract	extract	VERB
ajlm-2900	52	58	genomic	genomic	ADJ
ajlm-2900	52	59	dna	dna	NOUN
ajlm-2900	52	60	for	for	ADP
ajlm-2900	52	61	wgs	wgs	NOUN
ajlm-2900	52	62	analysis	analysis	NOUN
ajlm-2900	52	63	.	.	PUNCT
ajlm-2900	53	1	if	if	SCONJ
ajlm-2900	53	2	there	there	PRON
ajlm-2900	53	3	is	be	VERB
ajlm-2900	53	4	suspicion	suspicion	NOUN
ajlm-2900	53	5	that	that	SCONJ
ajlm-2900	53	6	a	a	DET
ajlm-2900	53	7	culture	culture	NOUN
ajlm-2900	53	8	is	be	AUX
ajlm-2900	53	9	not	not	PART
ajlm-2900	53	10	a	a	DET
ajlm-2900	53	11	salmonella	salmonella	NOUN
ajlm-2900	53	12	,	,	PUNCT
ajlm-2900	53	13	then	then	ADV
ajlm-2900	53	14	that	that	DET
ajlm-2900	53	15	culture	culture	NOUN
ajlm-2900	53	16	will	will	AUX
ajlm-2900	53	17	be	be	AUX
ajlm-2900	53	18	further	far	ADV
ajlm-2900	53	19	investigated	investigate	VERB
ajlm-2900	53	20	using	use	VERB
ajlm-2900	53	21	standard	standard	ADJ
ajlm-2900	53	22	phenotypic	phenotypic	ADJ
ajlm-2900	53	23	microbiological	microbiological	ADJ
ajlm-2900	53	24	identification	identification	NOUN
ajlm-2900	53	25	and	and	CCONJ
ajlm-2900	53	26	serotyping	serotyping	NOUN
ajlm-2900	53	27	methodologies	methodology	NOUN
ajlm-2900	53	28	,	,	PUNCT
ajlm-2900	53	29	including	include	VERB
ajlm-2900	53	30	vitek-2	vitek-2	NUM
ajlm-2900	53	31	identification	identification	NOUN
ajlm-2900	53	32	(	(	PUNCT
ajlm-2900	53	33	biomérieux	biomérieux	PROPN
ajlm-2900	53	34	,	,	PUNCT
ajlm-2900	53	35	marcy	marcy	NOUN
ajlm-2900	53	36	-	-	PUNCT
ajlm-2900	53	37	l’étoile	l’étoile	PROPN
ajlm-2900	53	38	,	,	PUNCT
ajlm-2900	53	39	france	france	PROPN
ajlm-2900	53	40	)	)	PUNCT
ajlm-2900	53	41	and	and	CCONJ
ajlm-2900	53	42	serotyping	serotyping	NOUN
ajlm-2900	53	43	completed	complete	VERB
ajlm-2900	53	44	as	as	ADP
ajlm-2900	53	45	per	per	ADP
ajlm-2900	53	46	the	the	DET
ajlm-2900	53	47	white	white	ADJ
ajlm-2900	53	48	-	-	PUNCT
ajlm-2900	53	49	kauffmann	kauffmann	NOUN
ajlm-2900	53	50	-	-	PUNCT
ajlm-2900	53	51	le	le	ADJ
ajlm-2900	53	52	minor	minor	ADJ
ajlm-2900	53	53	scheme	scheme	NOUN
ajlm-2900	53	54	.	.	PUNCT
ajlm-2900	54	1	when	when	SCONJ
ajlm-2900	54	2	required	require	VERB
ajlm-2900	54	3	,	,	PUNCT
ajlm-2900	54	4	antimicrobial	antimicrobial	ADJ
ajlm-2900	54	5	(	(	PUNCT
ajlm-2900	54	6	ampicillin	ampicillin	PROPN
ajlm-2900	54	7	,	,	PUNCT
ajlm-2900	54	8	ciprofloxacin	ciprofloxacin	PROPN
ajlm-2900	54	9	,	,	PUNCT
ajlm-2900	54	10	ceftriaxone	ceftriaxone	NOUN
ajlm-2900	54	11	,	,	PUNCT
ajlm-2900	54	12	azithromycin	azithromycin	PROPN
ajlm-2900	54	13	)	)	PUNCT
ajlm-2900	54	14	susceptibility	susceptibility	NOUN
ajlm-2900	54	15	testing	testing	NOUN
ajlm-2900	54	16	was	be	AUX
ajlm-2900	54	17	achieved	achieve	VERB
ajlm-2900	54	18	via	via	ADP
ajlm-2900	54	19	the	the	DET
ajlm-2900	54	20	etest	et	ADJ
ajlm-2900	54	21	methodology	methodology	NOUN
ajlm-2900	54	22	(	(	PUNCT
ajlm-2900	54	23	biomérieux	biomérieux	PROPN
ajlm-2900	54	24	)	)	PUNCT
ajlm-2900	54	25	.	.	PUNCT
ajlm-2900	55	1	interpretation	interpretation	NOUN
ajlm-2900	55	2	of	of	ADP
ajlm-2900	55	3	susceptibility	susceptibility	NOUN
ajlm-2900	55	4	data	datum	NOUN
ajlm-2900	55	5	was	be	AUX
ajlm-2900	55	6	performed	perform	VERB
ajlm-2900	55	7	as	as	ADP
ajlm-2900	55	8	per	per	ADP
ajlm-2900	55	9	the	the	DET
ajlm-2900	55	10	clinical	clinical	ADJ
ajlm-2900	55	11	and	and	CCONJ
ajlm-2900	55	12	laboratory	laboratory	NOUN
ajlm-2900	55	13	standards	standard	NOUN
ajlm-2900	55	14	institute	institute	PROPN
ajlm-2900	55	15	guidelines.19	guidelines.19	PROPN
ajlm-2900	55	16	genomic	genomic	PROPN
ajlm-2900	55	17	dna	dna	PROPN
ajlm-2900	55	18	extraction	extraction	NOUN
ajlm-2900	55	19	and	and	CCONJ
ajlm-2900	55	20	whole	whole	ADJ
ajlm-2900	55	21	-	-	PUNCT
ajlm-2900	55	22	genome	genome	NOUN
ajlm-2900	55	23	sequencing	sequencing	NOUN
ajlm-2900	55	24	of	of	ADP
ajlm-2900	55	25	bacteria	bacteria	NOUN
ajlm-2900	55	26	genomic	genomic	ADJ
ajlm-2900	55	27	dna	dna	NOUN
ajlm-2900	55	28	was	be	AUX
ajlm-2900	55	29	extracted	extract	VERB
ajlm-2900	55	30	from	from	ADP
ajlm-2900	55	31	bacteria	bacteria	NOUN
ajlm-2900	55	32	using	use	VERB
ajlm-2900	55	33	either	either	CCONJ
ajlm-2900	55	34	the	the	DET
ajlm-2900	55	35	qiagen	qiagen	PROPN
ajlm-2900	55	36	qiaamp	qiaamp	PROPN
ajlm-2900	55	37	dna	dna	PROPN
ajlm-2900	55	38	mini	mini	PROPN
ajlm-2900	55	39	kit	kit	NOUN
ajlm-2900	55	40	(	(	PUNCT
ajlm-2900	55	41	qiagen	qiagen	PROPN
ajlm-2900	55	42	,	,	PUNCT
ajlm-2900	55	43	hilden	hilden	PROPN
ajlm-2900	55	44	,	,	PUNCT
ajlm-2900	55	45	germany	germany	PROPN
ajlm-2900	55	46	)	)	PUNCT
ajlm-2900	55	47	or	or	CCONJ
ajlm-2900	55	48	the	the	DET
ajlm-2900	55	49	invitrogen	invitrogen	PROPN
ajlm-2900	55	50	purelink	purelink	VERB
ajlm-2900	55	51	microbiome	microbiome	ADJ
ajlm-2900	55	52	dna	dna	PROPN
ajlm-2900	55	53	purification	purification	NOUN
ajlm-2900	55	54	kit	kit	NOUN
ajlm-2900	55	55	(	(	PUNCT
ajlm-2900	55	56	invitrogen	invitrogen	PROPN
ajlm-2900	55	57	,	,	PUNCT
ajlm-2900	55	58	waltham	waltham	PROPN
ajlm-2900	55	59	,	,	PUNCT
ajlm-2900	55	60	massachusetts	massachusetts	PROPN
ajlm-2900	55	61	,	,	PUNCT
ajlm-2900	55	62	united	united	PROPN
ajlm-2900	55	63	states	states	PROPN
ajlm-2900	55	64	)	)	PUNCT
ajlm-2900	55	65	.	.	PUNCT
ajlm-2900	56	1	whole	whole	ADJ
ajlm-2900	56	2	-	-	PUNCT
ajlm-2900	56	3	genome	genome	NOUN
ajlm-2900	56	4	sequencing	sequencing	NOUN
ajlm-2900	56	5	was	be	AUX
ajlm-2900	56	6	performed	perform	VERB
ajlm-2900	56	7	by	by	ADP
ajlm-2900	56	8	the	the	DET
ajlm-2900	56	9	nicd	nicd	NOUN
ajlm-2900	56	10	sequencing	sequence	VERB
ajlm-2900	56	11	core	core	NOUN
ajlm-2900	56	12	facility	facility	NOUN
ajlm-2900	56	13	(	(	PUNCT
ajlm-2900	56	14	scf	scf	PROPN
ajlm-2900	56	15	)	)	PUNCT
ajlm-2900	56	16	.	.	PUNCT
ajlm-2900	57	1	from	from	ADP
ajlm-2900	57	2	2020	2020	NUM
ajlm-2900	57	3	to	to	ADP
ajlm-2900	57	4	2023	2023	NUM
ajlm-2900	57	5	,	,	PUNCT
ajlm-2900	57	6	wgs	wgs	NOUN
ajlm-2900	57	7	was	be	AUX
ajlm-2900	57	8	performed	perform	VERB
ajlm-2900	57	9	using	use	VERB
ajlm-2900	57	10	various	various	ADJ
ajlm-2900	57	11	models	model	NOUN
ajlm-2900	57	12	of	of	ADP
ajlm-2900	57	13	illumina	illumina	PROPN
ajlm-2900	57	14	equipment	equipment	PROPN
ajlm-2900	57	15	(	(	PUNCT
ajlm-2900	57	16	illumina	illumina	PROPN
ajlm-2900	57	17	,	,	PUNCT
ajlm-2900	57	18	san	san	PROPN
ajlm-2900	57	19	diego	diego	PROPN
ajlm-2900	57	20	,	,	PUNCT
ajlm-2900	57	21	california	california	PROPN
ajlm-2900	57	22	,	,	PUNCT
ajlm-2900	57	23	united	united	PROPN
ajlm-2900	57	24	states	states	PROPN
ajlm-2900	57	25	)	)	PUNCT
ajlm-2900	57	26	,	,	PUNCT
ajlm-2900	57	27	including	include	VERB
ajlm-2900	57	28	illumina	illumina	PROPN
ajlm-2900	57	29	miseq	miseq	PROPN
ajlm-2900	57	30	,	,	PUNCT
ajlm-2900	57	31	illumina	illumina	PROPN
ajlm-2900	57	32	nextseq	nextseq	PROPN
ajlm-2900	57	33	550	550	NUM
ajlm-2900	57	34	and	and	CCONJ
ajlm-2900	57	35	illumina	illumina	PROPN
ajlm-2900	57	36	nextseq	nextseq	PROPN
ajlm-2900	57	37	1000	1000	NUM
ajlm-2900	57	38	.	.	PUNCT
ajlm-2900	58	1	dna	dna	PROPN
ajlm-2900	58	2	libraries	library	NOUN
ajlm-2900	58	3	were	be	AUX
ajlm-2900	58	4	prepared	prepare	VERB
ajlm-2900	58	5	using	use	VERB
ajlm-2900	58	6	various	various	ADJ
ajlm-2900	58	7	illumina	illumina	PROPN
ajlm-2900	58	8	kits	kit	NOUN
ajlm-2900	58	9	,	,	PUNCT
ajlm-2900	58	10	including	include	VERB
ajlm-2900	58	11	the	the	DET
ajlm-2900	58	12	nextera	nextera	PROPN
ajlm-2900	58	13	xt	xt	PROPN
ajlm-2900	58	14	dna	dna	PROPN
ajlm-2900	58	15	library	library	PROPN
ajlm-2900	58	16	preparation	preparation	PROPN
ajlm-2900	58	17	kit	kit	PROPN
ajlm-2900	58	18	,	,	PUNCT
ajlm-2900	58	19	the	the	DET
ajlm-2900	58	20	nextera	nextera	ADJ
ajlm-2900	58	21	dna	dna	PROPN
ajlm-2900	58	22	flex	flex	PROPN
ajlm-2900	58	23	library	library	NOUN
ajlm-2900	58	24	preparation	preparation	NOUN
ajlm-2900	58	25	kit	kit	NOUN
ajlm-2900	58	26	and	and	CCONJ
ajlm-2900	58	27	the	the	DET
ajlm-2900	58	28	illumina	illumina	PROPN
ajlm-2900	58	29	dna	dna	PROPN
ajlm-2900	58	30	prep	prep	PROPN
ajlm-2900	58	31	kit	kit	PROPN
ajlm-2900	58	32	.	.	PUNCT
ajlm-2900	59	1	sequencing	sequence	VERB
ajlm-2900	59	2	included	include	VERB
ajlm-2900	59	3	paired	pair	VERB
ajlm-2900	59	4	-	-	PUNCT
ajlm-2900	59	5	end	end	NOUN
ajlm-2900	59	6	sequencing	sequencing	NOUN
ajlm-2900	59	7	runs	run	NOUN
ajlm-2900	59	8	,	,	PUNCT
ajlm-2900	59	9	including	include	VERB
ajlm-2900	59	10	~80	~80	X
ajlm-2900	59	11	times	times	PROPN
ajlm-2900	59	12	coverage	coverage	NOUN
ajlm-2900	59	13	.	.	PUNCT
ajlm-2900	60	1	analysis	analysis	NOUN
ajlm-2900	60	2	of	of	ADP
ajlm-2900	60	3	whole	whole	ADJ
ajlm-2900	60	4	-	-	PUNCT
ajlm-2900	60	5	genome	genome	NOUN
ajlm-2900	60	6	sequencing	sequence	VERB
ajlm-2900	60	7	data	datum	NOUN
ajlm-2900	60	8	the	the	DET
ajlm-2900	60	9	ced	ced	NOUN
ajlm-2900	60	10	performed	perform	VERB
ajlm-2900	60	11	analysis	analysis	NOUN
ajlm-2900	60	12	of	of	ADP
ajlm-2900	60	13	wgs	wgs	NOUN
ajlm-2900	60	14	data	datum	NOUN
ajlm-2900	60	15	using	use	VERB
ajlm-2900	60	16	methodology	methodology	NOUN
ajlm-2900	60	17	as	as	SCONJ
ajlm-2900	60	18	previously	previously	ADV
ajlm-2900	60	19	described.17,18	described.17,18	NOUN
ajlm-2900	60	20	methodology	methodology	NOUN
ajlm-2900	60	21	is	be	AUX
ajlm-2900	60	22	briefly	briefly	ADV
ajlm-2900	60	23	described	describe	VERB
ajlm-2900	60	24	as	as	ADP
ajlm-2900	60	25	follows	follow	VERB
ajlm-2900	60	26	.	.	PUNCT
ajlm-2900	61	1	illumina	illumina	PROPN
ajlm-2900	61	2	data	data	PROPN
ajlm-2900	61	3	were	be	AUX
ajlm-2900	61	4	processed	process	VERB
ajlm-2900	61	5	and	and	CCONJ
ajlm-2900	61	6	investigated	investigate	VERB
ajlm-2900	61	7	with	with	ADP
ajlm-2900	61	8	the	the	DET
ajlm-2900	61	9	jekesa	jekesa	PROPN
ajlm-2900	61	10	bioinformatics	bioinformatics	PROPN
ajlm-2900	61	11	pipeline	pipeline	NOUN
ajlm-2900	61	12	(	(	PUNCT
ajlm-2900	61	13	https://github.com/stanikae/jekesa	https://github.com/stanikae/jekesa	PROPN
ajlm-2900	61	14	)	)	PUNCT
ajlm-2900	61	15	,	,	PUNCT
ajlm-2900	61	16	which	which	PRON
ajlm-2900	61	17	includes	include	VERB
ajlm-2900	61	18	several	several	ADJ
ajlm-2900	61	19	analysis	analysis	NOUN
ajlm-2900	61	20	tools	tool	NOUN
ajlm-2900	61	21	.	.	PUNCT
ajlm-2900	62	1	default	default	NOUN
ajlm-2900	62	2	options	option	NOUN
ajlm-2900	62	3	were	be	AUX
ajlm-2900	62	4	set	set	VERB
ajlm-2900	62	5	for	for	ADP
ajlm-2900	62	6	all	all	DET
ajlm-2900	62	7	tools	tool	NOUN
ajlm-2900	62	8	,	,	PUNCT
ajlm-2900	62	9	unless	unless	SCONJ
ajlm-2900	62	10	otherwise	otherwise	ADV
ajlm-2900	62	11	mentioned	mention	VERB
ajlm-2900	62	12	.	.	PUNCT
ajlm-2900	63	1	quality	quality	NOUN
ajlm-2900	63	2	control	control	NOUN
ajlm-2900	63	3	and	and	CCONJ
ajlm-2900	63	4	filtering	filtering	NOUN
ajlm-2900	63	5	of	of	ADP
ajlm-2900	63	6	reads	read	NOUN
ajlm-2900	63	7	were	be	AUX
ajlm-2900	63	8	performed	perform	VERB
ajlm-2900	63	9	with	with	ADP
ajlm-2900	63	10	fastqc	fastqc	ADJ
ajlm-2900	63	11	version	version	NOUN
ajlm-2900	63	12	0.11.9	0.11.9	NUM
ajlm-2900	63	13	(	(	PUNCT
ajlm-2900	63	14	https://www.bioinformatics.babraham.ac.uk/projects/fastqc/	https://www.bioinformatics.babraham.ac.uk/projects/fastqc/	PROPN
ajlm-2900	63	15	)	)	PUNCT
ajlm-2900	63	16	and	and	CCONJ
ajlm-2900	63	17	trimgalore	trimgalore	VERB
ajlm-2900	63	18	version	version	NOUN
ajlm-2900	63	19	0.6.2	0.6.2	PRON
ajlm-2900	63	20	set	set	VERB
ajlm-2900	63	21	at	at	ADP
ajlm-2900	63	22	a	a	DET
ajlm-2900	63	23	minimum	minimum	NOUN
ajlm-2900	63	24	phred	phre	VERB
ajlm-2900	63	25	quality	quality	NOUN
ajlm-2900	63	26	score	score	NOUN
ajlm-2900	63	27	of	of	ADP
ajlm-2900	63	28	30	30	NUM
ajlm-2900	63	29	and	and	CCONJ
ajlm-2900	63	30	minimum	minimum	NOUN
ajlm-2900	63	31	read	read	NOUN
ajlm-2900	63	32	length	length	NOUN
ajlm-2900	63	33	of	of	ADP
ajlm-2900	63	34	50	50	NUM
ajlm-2900	63	35	bp	bp	NOUN
ajlm-2900	63	36	.	.	PUNCT
ajlm-2900	64	1	identification	identification	NOUN
ajlm-2900	64	2	of	of	ADP
ajlm-2900	64	3	species	specie	NOUN
ajlm-2900	64	4	and	and	CCONJ
ajlm-2900	64	5	detection	detection	NOUN
ajlm-2900	64	6	to	to	ADP
ajlm-2900	64	7	closest	close	ADJ
ajlm-2900	64	8	reference	reference	NOUN
ajlm-2900	64	9	were	be	AUX
ajlm-2900	64	10	accomplished	accomplish	VERB
ajlm-2900	64	11	using	use	VERB
ajlm-2900	64	12	bactinspector	bactinspector	PROPN
ajlm-2900	64	13	version	version	PROPN
ajlm-2900	64	14	0.1.3	0.1.3	PROPN
ajlm-2900	64	15	(	(	PUNCT
ajlm-2900	64	16	https://gitlab.com/antunderwood/bactinspector	https://gitlab.com/antunderwood/bactinspector	NOUN
ajlm-2900	64	17	)	)	PUNCT
ajlm-2900	64	18	.	.	PUNCT
ajlm-2900	65	1	checking	check	VERB
ajlm-2900	65	2	for	for	ADP
ajlm-2900	65	3	contamination	contamination	NOUN
ajlm-2900	65	4	was	be	AUX
ajlm-2900	65	5	accomplished	accomplish	VERB
ajlm-2900	65	6	with	with	ADP
ajlm-2900	65	7	confindr	confindr	PROPN
ajlm-2900	65	8	version	version	NOUN
ajlm-2900	65	9	0.7.4	0.7.4	NUM
ajlm-2900	65	10	(	(	PUNCT
ajlm-2900	65	11	https://github.com/olc-bioinformatics/confindr	https://github.com/olc-bioinformatics/confindr	NOUN
ajlm-2900	65	12	)	)	PUNCT
ajlm-2900	65	13	and	and	CCONJ
ajlm-2900	65	14	kraken2	kraken2	NOUN
ajlm-2900	65	15	version	version	NOUN
ajlm-2900	65	16	2.0.8	2.0.8	NUM
ajlm-2900	65	17	-	-	PUNCT
ajlm-2900	65	18	beta	beta	ADJ
ajlm-2900	65	19	(	(	PUNCT
ajlm-2900	65	20	https://github.com/derrickwood/kraken2/releases	https://github.com/derrickwood/kraken2/release	NOUN
ajlm-2900	65	21	)	)	PUNCT
ajlm-2900	65	22	.	.	PUNCT
ajlm-2900	66	1	de	de	PROPN
ajlm-2900	66	2	novo	novo	PROPN
ajlm-2900	66	3	assembly	assembly	PROPN
ajlm-2900	66	4	was	be	AUX
ajlm-2900	66	5	accomplished	accomplish	VERB
ajlm-2900	66	6	using	use	VERB
ajlm-2900	66	7	skesa	skesa	NOUN
ajlm-2900	66	8	version	version	NOUN
ajlm-2900	66	9	2.3.0	2.3.0	NUM
ajlm-2900	66	10	(	(	PUNCT
ajlm-2900	66	11	https://github.com/ncbi/skesa	https://github.com/ncbi/skesa	PROPN
ajlm-2900	66	12	)	)	PUNCT
ajlm-2900	66	13	,	,	PUNCT
ajlm-2900	66	14	followed	follow	VERB
ajlm-2900	66	15	by	by	ADP
ajlm-2900	66	16	optimisation	optimisation	NOUN
ajlm-2900	66	17	of	of	ADP
ajlm-2900	66	18	the	the	DET
ajlm-2900	66	19	assemblies	assembly	NOUN
ajlm-2900	66	20	with	with	ADP
ajlm-2900	66	21	shovill	shovill	NOUN
ajlm-2900	66	22	version	version	PROPN
ajlm-2900	66	23	1.1.0	1.1.0	NUM
ajlm-2900	66	24	(	(	PUNCT
ajlm-2900	66	25	https://github.com/tseemann/shovill	https://github.com/tseemann/shovill	PROPN
ajlm-2900	66	26	)	)	PUNCT
ajlm-2900	66	27	,	,	PUNCT
ajlm-2900	66	28	with	with	ADP
ajlm-2900	66	29	depth	depth	NOUN
ajlm-2900	66	30	set	set	VERB
ajlm-2900	66	31	to	to	ADP
ajlm-2900	66	32	100	100	NUM
ajlm-2900	66	33	and	and	CCONJ
ajlm-2900	66	34	minimum	minimum	ADJ
ajlm-2900	66	35	contig	contig	NOUN
ajlm-2900	66	36	length	length	NOUN
ajlm-2900	66	37	set	set	VERB
ajlm-2900	66	38	to	to	ADP
ajlm-2900	66	39	200	200	NUM
ajlm-2900	66	40	.	.	PUNCT
ajlm-2900	67	1	assessment	assessment	NOUN
ajlm-2900	67	2	of	of	ADP
ajlm-2900	67	3	assembly	assembly	NOUN
ajlm-2900	67	4	metrics	metric	NOUN
ajlm-2900	67	5	were	be	AUX
ajlm-2900	67	6	performed	perform	VERB
ajlm-2900	67	7	with	with	ADP
ajlm-2900	67	8	quast	quast	NOUN
ajlm-2900	67	9	version	version	NOUN
ajlm-2900	67	10	5.0.2	5.0.2	NUM
ajlm-2900	67	11	using	use	VERB
ajlm-2900	67	12	pubmlst	pubmlst	NOUN
ajlm-2900	67	13	typing	type	VERB
ajlm-2900	67	14	schemes	scheme	NOUN
ajlm-2900	67	15	(	(	PUNCT
ajlm-2900	67	16	https://pubmlst.org/	https://pubmlst.org/	NOUN
ajlm-2900	67	17	)	)	PUNCT
ajlm-2900	67	18	.	.	PUNCT
ajlm-2900	68	1	identification	identification	NOUN
ajlm-2900	68	2	of	of	ADP
ajlm-2900	68	3	amr	amr	ADJ
ajlm-2900	68	4	determinants	determinant	NOUN
ajlm-2900	68	5	was	be	AUX
ajlm-2900	68	6	accomplished	accomplish	VERB
ajlm-2900	68	7	with	with	ADP
ajlm-2900	68	8	resfinder	resfinder	NOUN
ajlm-2900	68	9	version	version	NOUN
ajlm-2900	68	10	4.1	4.1	NUM
ajlm-2900	68	11	(	(	PUNCT
ajlm-2900	68	12	https://www.genomicepidemiology.org/services/	https://www.genomicepidemiology.org/services/	NOUN
ajlm-2900	68	13	)	)	PUNCT
ajlm-2900	68	14	and	and	CCONJ
ajlm-2900	68	15	ncbi	ncbi	PROPN
ajlm-2900	68	16	amrfinder	amrfinder	PROPN
ajlm-2900	68	17	version	version	PROPN
ajlm-2900	68	18	3.11.26.20	3.11.26.20	PROPN
ajlm-2900	68	19	prediction	prediction	NOUN
ajlm-2900	68	20	of	of	ADP
ajlm-2900	68	21	salmonella	salmonella	NOUN
ajlm-2900	68	22	serovars	serovar	NOUN
ajlm-2900	68	23	was	be	AUX
ajlm-2900	68	24	accomplished	accomplish	VERB
ajlm-2900	68	25	with	with	ADP
ajlm-2900	68	26	seqsero2	seqsero2	ADJ
ajlm-2900	68	27	version	version	NOUN
ajlm-2900	68	28	1.1.0	1.1.0	NUM
ajlm-2900	68	29	(	(	PUNCT
ajlm-2900	68	30	https://denglab.info/seqsero2	https://denglab.info/seqsero2	NOUN
ajlm-2900	68	31	)	)	PUNCT
ajlm-2900	68	32	and	and	CCONJ
ajlm-2900	68	33	sistr	sistr	PROPN
ajlm-2900	68	34	version	version	PROPN
ajlm-2900	68	35	1.1.2	1.1.2	NUM
ajlm-2900	68	36	(	(	PUNCT
ajlm-2900	68	37	https://github.com/phac-nml/sistr_cmd	https://github.com/phac-nml/sistr_cmd	NOUN
ajlm-2900	68	38	)	)	PUNCT
ajlm-2900	68	39	.	.	PUNCT
ajlm-2900	69	1	investigation	investigation	NOUN
ajlm-2900	69	2	of	of	ADP
ajlm-2900	69	3	wgs	wgs	NOUN
ajlm-2900	69	4	data	datum	NOUN
ajlm-2900	69	5	was	be	AUX
ajlm-2900	69	6	further	far	ADV
ajlm-2900	69	7	accomplished	accomplish	VERB
ajlm-2900	69	8	at	at	ADP
ajlm-2900	69	9	enterobase	enterobase	PROPN
ajlm-2900	69	10	(	(	PUNCT
ajlm-2900	69	11	http://enterobase.warwick.ac.uk/species/index/senterica	http://enterobase.warwick.ac.uk/species/index/senterica	PROPN
ajlm-2900	69	12	)	)	PUNCT
ajlm-2900	69	13	.	.	PUNCT
ajlm-2900	70	1	raw	raw	ADJ
ajlm-2900	70	2	sequencing	sequence	VERB
ajlm-2900	70	3	data	datum	NOUN
ajlm-2900	70	4	were	be	AUX
ajlm-2900	70	5	submitted	submit	VERB
ajlm-2900	70	6	to	to	PART
ajlm-2900	70	7	enterobase	enterobase	VERB
ajlm-2900	70	8	,	,	PUNCT
ajlm-2900	70	9	where	where	SCONJ
ajlm-2900	70	10	the	the	DET
ajlm-2900	70	11	data	datum	NOUN
ajlm-2900	70	12	were	be	AUX
ajlm-2900	70	13	quality	quality	NOUN
ajlm-2900	70	14	checked	check	VERB
ajlm-2900	70	15	,	,	PUNCT
ajlm-2900	70	16	assembled	assemble	VERB
ajlm-2900	70	17	and	and	CCONJ
ajlm-2900	70	18	analysed	analyse	VERB
ajlm-2900	70	19	via	via	ADP
ajlm-2900	70	20	multiple	multiple	ADJ
ajlm-2900	70	21	tools	tool	NOUN
ajlm-2900	70	22	,	,	PUNCT
ajlm-2900	70	23	to	to	PART
ajlm-2900	70	24	provide	provide	VERB
ajlm-2900	70	25	information	information	NOUN
ajlm-2900	70	26	concerning	concern	VERB
ajlm-2900	70	27	salmonella	salmonella	NOUN
ajlm-2900	70	28	serovar	serovar	NOUN
ajlm-2900	70	29	,	,	PUNCT
ajlm-2900	70	30	amr	amr	NOUN
ajlm-2900	70	31	determinants	determinant	NOUN
ajlm-2900	70	32	,	,	PUNCT
ajlm-2900	70	33	mlst	mlst	NOUN
ajlm-2900	70	34	and	and	CCONJ
ajlm-2900	70	35	cgmlst	cgmlst	NOUN
ajlm-2900	70	36	.	.	PUNCT
ajlm-2900	71	1	the	the	DET
ajlm-2900	71	2	phylogeny	phylogeny	NOUN
ajlm-2900	71	3	of	of	ADP
ajlm-2900	71	4	isolates	isolate	NOUN
ajlm-2900	71	5	was	be	AUX
ajlm-2900	71	6	explored	explore	VERB
ajlm-2900	71	7	with	with	ADP
ajlm-2900	71	8	the	the	DET
ajlm-2900	71	9	enterobase	enterobase	NOUN
ajlm-2900	71	10	cgmlst	cgmlst	NOUN
ajlm-2900	71	11	tool	tool	NOUN
ajlm-2900	71	12	incorporating	incorporate	VERB
ajlm-2900	71	13	the	the	DET
ajlm-2900	71	14	‘	'	PUNCT
ajlm-2900	71	15	cgmlst	cgmlst	NOUN
ajlm-2900	71	16	v2	v2	NOUN
ajlm-2900	71	17	+	+	CCONJ
ajlm-2900	71	18	hiercc	hiercc	NOUN
ajlm-2900	71	19	v1	v1	NOUN
ajlm-2900	71	20	’	'	PUNCT
ajlm-2900	71	21	scheme	scheme	NOUN
ajlm-2900	71	22	,	,	PUNCT
ajlm-2900	71	23	which	which	PRON
ajlm-2900	71	24	performs	perform	VERB
ajlm-2900	71	25	an	an	DET
ajlm-2900	71	26	analysis	analysis	NOUN
ajlm-2900	71	27	on	on	ADP
ajlm-2900	71	28	3002	3002	NUM
ajlm-2900	71	29	core	core	NOUN
ajlm-2900	71	30	genes	gene	NOUN
ajlm-2900	71	31	of	of	ADP
ajlm-2900	71	32	salmonella	salmonella	NOUN
ajlm-2900	71	33	.	.	PUNCT
ajlm-2900	72	1	the	the	DET
ajlm-2900	72	2	phylogeny	phylogeny	NOUN
ajlm-2900	72	3	and	and	CCONJ
ajlm-2900	72	4	genetic	genetic	ADJ
ajlm-2900	72	5	relatedness	relatedness	NOUN
ajlm-2900	72	6	of	of	ADP
ajlm-2900	72	7	isolates	isolate	NOUN
ajlm-2900	72	8	were	be	AUX
ajlm-2900	72	9	visualised	visualise	VERB
ajlm-2900	72	10	with	with	ADP
ajlm-2900	72	11	a	a	DET
ajlm-2900	72	12	grapetree	grapetree	NOUN
ajlm-2900	72	13	-	-	PUNCT
ajlm-2900	72	14	generated	generate	VERB
ajlm-2900	72	15	minimum	minimum	NOUN
ajlm-2900	72	16	spanning	span	VERB
ajlm-2900	72	17	tree	tree	NOUN
ajlm-2900	72	18	using	use	VERB
ajlm-2900	72	19	the	the	DET
ajlm-2900	72	20	‘	'	PUNCT
ajlm-2900	72	21	mstree	mstree	ADJ
ajlm-2900	72	22	v2	v2	NOUN
ajlm-2900	72	23	’	'	PUNCT
ajlm-2900	72	24	algorithm.21	algorithm.21	PROPN
ajlm-2900	72	25	for	for	ADP
ajlm-2900	72	26	cluster	cluster	NOUN
ajlm-2900	72	27	detection	detection	NOUN
ajlm-2900	72	28	,	,	PUNCT
ajlm-2900	72	29	we	we	PRON
ajlm-2900	72	30	followed	follow	VERB
ajlm-2900	72	31	the	the	DET
ajlm-2900	72	32	following	follow	VERB
ajlm-2900	72	33	steps	step	NOUN
ajlm-2900	72	34	.	.	PUNCT
ajlm-2900	73	1	once	once	ADV
ajlm-2900	73	2	a	a	DET
ajlm-2900	73	3	grapetree	grapetree	NOUN
ajlm-2900	73	4	was	be	AUX
ajlm-2900	73	5	produced	produce	VERB
ajlm-2900	73	6	,	,	PUNCT
ajlm-2900	73	7	the	the	DET
ajlm-2900	73	8	settings	setting	NOUN
ajlm-2900	73	9	/	/	SYM
ajlm-2900	73	10	operators	operator	NOUN
ajlm-2900	73	11	of	of	ADP
ajlm-2900	73	12	the	the	DET
ajlm-2900	73	13	tool	tool	NOUN
ajlm-2900	73	14	were	be	AUX
ajlm-2900	73	15	set	set	VERB
ajlm-2900	73	16	to	to	PART
ajlm-2900	73	17	‘	'	PUNCT
ajlm-2900	73	18	collapse	collapse	VERB
ajlm-2900	73	19	branches	branch	NOUN
ajlm-2900	73	20	’	'	PUNCT
ajlm-2900	73	21	at	at	ADP
ajlm-2900	73	22	a	a	DET
ajlm-2900	73	23	value	value	NOUN
ajlm-2900	73	24	of	of	ADP
ajlm-2900	73	25	‘	'	PUNCT
ajlm-2900	73	26	5	5	NUM
ajlm-2900	73	27	’	'	PUNCT
ajlm-2900	73	28	,	,	PUNCT
ajlm-2900	73	29	which	which	PRON
ajlm-2900	73	30	ensued	ensue	VERB
ajlm-2900	73	31	that	that	SCONJ
ajlm-2900	73	32	isolates	isolate	NOUN
ajlm-2900	73	33	showing	show	VERB
ajlm-2900	73	34	≤	≤	NUM
ajlm-2900	73	35	5	5	NUM
ajlm-2900	73	36	allelic	allelic	ADJ
ajlm-2900	73	37	differences	difference	NOUN
ajlm-2900	73	38	were	be	AUX
ajlm-2900	73	39	collapsed	collapse	VERB
ajlm-2900	73	40	together	together	ADV
ajlm-2900	73	41	into	into	ADP
ajlm-2900	73	42	a	a	DET
ajlm-2900	73	43	‘	'	PUNCT
ajlm-2900	73	44	cluster	cluster	NOUN
ajlm-2900	73	45	’	'	PUNCT
ajlm-2900	73	46	.	.	PUNCT
ajlm-2900	74	1	our	our	PRON
ajlm-2900	74	2	cluster	cluster	NOUN
ajlm-2900	74	3	definition	definition	NOUN
ajlm-2900	74	4	was	be	AUX
ajlm-2900	74	5	≥	≥	NUM
ajlm-2900	74	6	3	3	NUM
ajlm-2900	74	7	isolates	isolate	NOUN
ajlm-2900	74	8	showing	show	VERB
ajlm-2900	74	9	≤	≤	NUM
ajlm-2900	74	10	5	5	NUM
ajlm-2900	74	11	allelic	allelic	ADJ
ajlm-2900	74	12	differences	difference	NOUN
ajlm-2900	74	13	,	,	PUNCT
ajlm-2900	74	14	as	as	SCONJ
ajlm-2900	74	15	found	find	VERB
ajlm-2900	74	16	by	by	ADP
ajlm-2900	74	17	the	the	DET
ajlm-2900	74	18	above	above	ADJ
ajlm-2900	74	19	actions	action	NOUN
ajlm-2900	74	20	,	,	PUNCT
ajlm-2900	74	21	following	follow	VERB
ajlm-2900	74	22	cgmlst	cgmlst	NOUN
ajlm-2900	74	23	analysis	analysis	NOUN
ajlm-2900	74	24	and	and	CCONJ
ajlm-2900	74	25	creation	creation	NOUN
ajlm-2900	74	26	of	of	ADP
ajlm-2900	74	27	a	a	DET
ajlm-2900	74	28	grapetree	grapetree	NOUN
ajlm-2900	74	29	.	.	PUNCT
ajlm-2900	75	1	for	for	ADP
ajlm-2900	75	2	all	all	DET
ajlm-2900	75	3	salmonella	salmonella	NOUN
ajlm-2900	75	4	serovars	serovar	NOUN
ajlm-2900	75	5	(	(	PUNCT
ajlm-2900	75	6	except	except	SCONJ
ajlm-2900	75	7	s.	s.	PROPN
ajlm-2900	75	8	enterica	enterica	PROPN
ajlm-2900	75	9	serovar	serovar	PROPN
ajlm-2900	75	10	enteritidis	enteritidi	NOUN
ajlm-2900	75	11	[	[	X
ajlm-2900	75	12	salmonella	salmonella	NOUN
ajlm-2900	75	13	enteritidis	enteritidi	NOUN
ajlm-2900	75	14	]	]	PUNCT
ajlm-2900	75	15	)	)	PUNCT
ajlm-2900	75	16	,	,	PUNCT
ajlm-2900	75	17	we	we	PRON
ajlm-2900	75	18	defined	define	VERB
ajlm-2900	75	19	a	a	DET
ajlm-2900	75	20	cluster	cluster	NOUN
ajlm-2900	75	21	of	of	ADP
ajlm-2900	75	22	isolates	isolate	NOUN
ajlm-2900	75	23	at	at	ADP
ajlm-2900	75	24	a	a	DET
ajlm-2900	75	25	≤	≤	NUM
ajlm-2900	75	26	5	5	NUM
ajlm-2900	75	27	-	-	PUNCT
ajlm-2900	75	28	allele	allele	NOUN
ajlm-2900	75	29	difference	difference	NOUN
ajlm-2900	75	30	threshold	threshold	NOUN
ajlm-2900	75	31	,	,	PUNCT
ajlm-2900	75	32	to	to	PART
ajlm-2900	75	33	denote	denote	VERB
ajlm-2900	75	34	high	high	ADJ
ajlm-2900	75	35	genetic	genetic	ADJ
ajlm-2900	75	36	relatedness	relatedness	NOUN
ajlm-2900	75	37	among	among	ADP
ajlm-2900	75	38	isolates	isolate	NOUN
ajlm-2900	75	39	and	and	CCONJ
ajlm-2900	75	40	identify	identify	VERB
ajlm-2900	75	41	cases	case	NOUN
ajlm-2900	75	42	likely	likely	ADV
ajlm-2900	75	43	associated	associate	VERB
ajlm-2900	75	44	with	with	ADP
ajlm-2900	75	45	a	a	DET
ajlm-2900	75	46	common	common	ADJ
ajlm-2900	75	47	cause	cause	NOUN
ajlm-2900	75	48	(	(	PUNCT
ajlm-2900	75	49	epidemiological	epidemiological	ADJ
ajlm-2900	75	50	link	link	NOUN
ajlm-2900	75	51	)	)	PUNCT
ajlm-2900	75	52	.	.	PUNCT
ajlm-2900	76	1	salmonella	salmonella	NOUN
ajlm-2900	76	2	enteritidis	enteritidi	NOUN
ajlm-2900	76	3	is	be	AUX
ajlm-2900	76	4	a	a	DET
ajlm-2900	76	5	highly	highly	ADV
ajlm-2900	76	6	clonal	clonal	ADJ
ajlm-2900	76	7	serovar	serovar	NOUN
ajlm-2900	76	8	,	,	PUNCT
ajlm-2900	76	9	so	so	SCONJ
ajlm-2900	76	10	in	in	ADP
ajlm-2900	76	11	order	order	NOUN
ajlm-2900	76	12	to	to	PART
ajlm-2900	76	13	refine	refine	VERB
ajlm-2900	76	14	cluster	cluster	NOUN
ajlm-2900	76	15	identification	identification	NOUN
ajlm-2900	76	16	for	for	ADP
ajlm-2900	76	17	this	this	DET
ajlm-2900	76	18	serovar	serovar	NOUN
ajlm-2900	76	19	to	to	PART
ajlm-2900	76	20	obtain	obtain	VERB
ajlm-2900	76	21	the	the	DET
ajlm-2900	76	22	most	most	ADV
ajlm-2900	76	23	epidemiological	epidemiological	ADJ
ajlm-2900	76	24	informative	informative	ADJ
ajlm-2900	76	25	clusters	cluster	NOUN
ajlm-2900	76	26	,	,	PUNCT
ajlm-2900	76	27	we	we	PRON
ajlm-2900	76	28	lowered	lower	VERB
ajlm-2900	76	29	the	the	DET
ajlm-2900	76	30	cluster	cluster	NOUN
ajlm-2900	76	31	definition	definition	NOUN
ajlm-2900	76	32	threshold	threshold	VERB
ajlm-2900	76	33	to	to	ADP
ajlm-2900	76	34	a	a	DET
ajlm-2900	76	35	0	0	NUM
ajlm-2900	76	36	-	-	PUNCT
ajlm-2900	76	37	allele	allele	NOUN
ajlm-2900	76	38	difference	difference	NOUN
ajlm-2900	76	39	.	.	PUNCT
ajlm-2900	77	1	clusters	cluster	NOUN
ajlm-2900	77	2	were	be	AUX
ajlm-2900	77	3	assigned	assign	VERB
ajlm-2900	77	4	(	(	PUNCT
ajlm-2900	77	5	associated	associate	VERB
ajlm-2900	77	6	with	with	ADP
ajlm-2900	77	7	)	)	PUNCT
ajlm-2900	77	8	enterobase	enterobase	NOUN
ajlm-2900	77	9	cgmlst	cgmlst	PROPN
ajlm-2900	77	10	hierarchical	hierarchical	ADJ
ajlm-2900	77	11	cluster	cluster	NOUN
ajlm-2900	77	12	level	level	NOUN
ajlm-2900	77	13	5	5	NUM
ajlm-2900	77	14	identifying	identify	VERB
ajlm-2900	77	15	numbers	number	NOUN
ajlm-2900	77	16	(	(	PUNCT
ajlm-2900	77	17	hierarchical	hierarchical	ADJ
ajlm-2900	77	18	cluster	cluster	NOUN
ajlm-2900	77	19	level	level	NOUN
ajlm-2900	77	20	5	5	NUM
ajlm-2900	77	21	is	be	AUX
ajlm-2900	77	22	where	where	SCONJ
ajlm-2900	77	23	isolates	isolate	NOUN
ajlm-2900	77	24	are	be	AUX
ajlm-2900	77	25	clustered	cluster	VERB
ajlm-2900	77	26	at	at	ADP
ajlm-2900	77	27	five	five	NUM
ajlm-2900	77	28	allele	allele	NOUN
ajlm-2900	77	29	differences	difference	NOUN
ajlm-2900	77	30	)	)	PUNCT
ajlm-2900	77	31	.	.	PUNCT
ajlm-2900	78	1	data	datum	NOUN
ajlm-2900	78	2	availability	availability	NOUN
ajlm-2900	78	3	sequencing	sequence	VERB
ajlm-2900	78	4	data	datum	NOUN
ajlm-2900	78	5	were	be	AUX
ajlm-2900	78	6	uploaded	upload	VERB
ajlm-2900	78	7	to	to	ADP
ajlm-2900	78	8	the	the	DET
ajlm-2900	78	9	public	public	ADJ
ajlm-2900	78	10	enterobase	enterobase	NOUN
ajlm-2900	78	11	platform	platform	NOUN
ajlm-2900	78	12	(	(	PUNCT
ajlm-2900	78	13	http://enterobase.warwick.ac.uk/species/index/senterica	http://enterobase.warwick.ac.uk/species/index/senterica	PROPN
ajlm-2900	78	14	)	)	PUNCT
ajlm-2900	78	15	and	and	CCONJ
ajlm-2900	78	16	are	be	AUX
ajlm-2900	78	17	freely	freely	ADV
ajlm-2900	78	18	available	available	ADJ
ajlm-2900	78	19	to	to	PART
ajlm-2900	78	20	access	access	VERB
ajlm-2900	78	21	at	at	ADP
ajlm-2900	78	22	this	this	DET
ajlm-2900	78	23	platform	platform	NOUN
ajlm-2900	78	24	.	.	PUNCT
ajlm-2900	79	1	data	datum	NOUN
ajlm-2900	79	2	are	be	AUX
ajlm-2900	79	3	also	also	ADV
ajlm-2900	79	4	available	available	ADJ
ajlm-2900	79	5	at	at	ADP
ajlm-2900	79	6	the	the	DET
ajlm-2900	79	7	european	european	ADJ
ajlm-2900	79	8	nucleotide	nucleotide	NOUN
ajlm-2900	79	9	archive	archive	NOUN
ajlm-2900	79	10	under	under	ADP
ajlm-2900	79	11	the	the	DET
ajlm-2900	79	12	project	project	NOUN
ajlm-2900	79	13	accession	accession	NOUN
ajlm-2900	79	14	numbers	number	NOUN
ajlm-2900	79	15	prjeb39002	prjeb39002	PROPN
ajlm-2900	79	16	,	,	PUNCT
ajlm-2900	79	17	prjeb39546	prjeb39546	PROPN
ajlm-2900	79	18	,	,	PUNCT
ajlm-2900	79	19	and	and	CCONJ
ajlm-2900	79	20	prjeb39988	prjeb39988	PROPN
ajlm-2900	79	21	.	.	PUNCT
ajlm-2900	80	1	results	result	NOUN
ajlm-2900	80	2	turnaround	turnaround	VERB
ajlm-2900	80	3	time	time	NOUN
ajlm-2900	80	4	to	to	ADP
ajlm-2900	80	5	whole	whole	ADJ
ajlm-2900	80	6	-	-	PUNCT
ajlm-2900	80	7	genome	genome	NOUN
ajlm-2900	80	8	sequencing	sequencing	NOUN
ajlm-2900	80	9	results	result	NOUN
ajlm-2900	80	10	and	and	CCONJ
ajlm-2900	80	11	costing	costing	NOUN
ajlm-2900	80	12	of	of	ADP
ajlm-2900	80	13	whole	whole	ADJ
ajlm-2900	80	14	-	-	PUNCT
ajlm-2900	80	15	genome	genome	NOUN
ajlm-2900	80	16	sequencing	sequencing	NOUN
ajlm-2900	80	17	following	follow	VERB
ajlm-2900	80	18	genomic	genomic	ADJ
ajlm-2900	80	19	dna	dna	PROPN
ajlm-2900	80	20	extraction	extraction	NOUN
ajlm-2900	80	21	from	from	ADP
ajlm-2900	80	22	bacteria	bacteria	NOUN
ajlm-2900	80	23	,	,	PUNCT
ajlm-2900	80	24	we	we	PRON
ajlm-2900	80	25	typically	typically	ADV
ajlm-2900	80	26	batch	batch	VERB
ajlm-2900	80	27	samples	sample	NOUN
ajlm-2900	80	28	and	and	CCONJ
ajlm-2900	80	29	submit	submit	VERB
ajlm-2900	80	30	weekly	weekly	ADV
ajlm-2900	80	31	(	(	PUNCT
ajlm-2900	80	32	usually	usually	ADV
ajlm-2900	80	33	on	on	ADP
ajlm-2900	80	34	a	a	DET
ajlm-2900	80	35	friday	friday	PROPN
ajlm-2900	80	36	)	)	PUNCT
ajlm-2900	80	37	to	to	ADP
ajlm-2900	80	38	our	our	PRON
ajlm-2900	80	39	scf	scf	PROPN
ajlm-2900	80	40	.	.	PUNCT
ajlm-2900	81	1	the	the	DET
ajlm-2900	81	2	turnaround	turnaround	NOUN
ajlm-2900	81	3	time	time	NOUN
ajlm-2900	81	4	to	to	ADP
ajlm-2900	81	5	completion	completion	NOUN
ajlm-2900	81	6	of	of	ADP
ajlm-2900	81	7	wgs	wgs	NOUN
ajlm-2900	81	8	at	at	ADP
ajlm-2900	81	9	our	our	PRON
ajlm-2900	81	10	scf	scf	PROPN
ajlm-2900	81	11	is	be	AUX
ajlm-2900	81	12	~10	~10	PUNCT
ajlm-2900	81	13	working	work	VERB
ajlm-2900	81	14	days	day	NOUN
ajlm-2900	81	15	.	.	PUNCT
ajlm-2900	82	1	for	for	ADP
ajlm-2900	82	2	urgent	urgent	ADJ
ajlm-2900	82	3	sequencing	sequencing	NOUN
ajlm-2900	82	4	,	,	PUNCT
ajlm-2900	82	5	such	such	ADJ
ajlm-2900	82	6	as	as	ADP
ajlm-2900	82	7	for	for	ADP
ajlm-2900	82	8	outbreak	outbreak	NOUN
ajlm-2900	82	9	investigations	investigation	NOUN
ajlm-2900	82	10	,	,	PUNCT
ajlm-2900	82	11	sequencing	sequence	VERB
ajlm-2900	82	12	can	can	AUX
ajlm-2900	82	13	be	be	AUX
ajlm-2900	82	14	fast	fast	ADV
ajlm-2900	82	15	-	-	PUNCT
ajlm-2900	82	16	tracked	track	VERB
ajlm-2900	82	17	,	,	PUNCT
ajlm-2900	82	18	resulting	result	VERB
ajlm-2900	82	19	in	in	ADP
ajlm-2900	82	20	decreased	decrease	VERB
ajlm-2900	82	21	turnaround	turnaround	PROPN
ajlm-2900	82	22	times	time	NOUN
ajlm-2900	82	23	(	(	PUNCT
ajlm-2900	82	24	3–5	3–5	NUM
ajlm-2900	82	25	working	working	ADJ
ajlm-2900	82	26	days	day	NOUN
ajlm-2900	82	27	)	)	PUNCT
ajlm-2900	82	28	.	.	PUNCT
ajlm-2900	83	1	in	in	ADP
ajlm-2900	83	2	general	general	ADJ
ajlm-2900	83	3	,	,	PUNCT
ajlm-2900	83	4	for	for	ADP
ajlm-2900	83	5	routine	routine	ADJ
ajlm-2900	83	6	sequencing	sequencing	NOUN
ajlm-2900	83	7	,	,	PUNCT
ajlm-2900	83	8	the	the	DET
ajlm-2900	83	9	turnaround	turnaround	NOUN
ajlm-2900	83	10	time	time	NOUN
ajlm-2900	83	11	from	from	ADP
ajlm-2900	83	12	receipt	receipt	NOUN
ajlm-2900	83	13	of	of	ADP
ajlm-2900	83	14	a	a	DET
ajlm-2900	83	15	culture	culture	NOUN
ajlm-2900	83	16	at	at	ADP
ajlm-2900	83	17	the	the	DET
ajlm-2900	83	18	ced	ced	PROPN
ajlm-2900	83	19	laboratory	laboratory	NOUN
ajlm-2900	83	20	to	to	ADP
ajlm-2900	83	21	completion	completion	NOUN
ajlm-2900	83	22	of	of	ADP
ajlm-2900	83	23	analysis	analysis	NOUN
ajlm-2900	83	24	of	of	ADP
ajlm-2900	83	25	wgs	wgs	NOUN
ajlm-2900	83	26	data	datum	NOUN
ajlm-2900	83	27	,	,	PUNCT
ajlm-2900	83	28	is	be	AUX
ajlm-2900	83	29	~15	~15	X
ajlm-2900	83	30	working	working	NOUN
ajlm-2900	83	31	days	day	NOUN
ajlm-2900	83	32	.	.	PUNCT
ajlm-2900	84	1	the	the	DET
ajlm-2900	84	2	costs	cost	NOUN
ajlm-2900	84	3	to	to	PART
ajlm-2900	84	4	perform	perform	VERB
ajlm-2900	84	5	illumina	illumina	PROPN
ajlm-2900	84	6	wgs	wgs	NOUN
ajlm-2900	84	7	have	have	AUX
ajlm-2900	84	8	steadily	steadily	ADV
ajlm-2900	84	9	decreased	decrease	VERB
ajlm-2900	84	10	year	year	NOUN
ajlm-2900	84	11	on	on	ADP
ajlm-2900	84	12	year	year	NOUN
ajlm-2900	84	13	.	.	PUNCT
ajlm-2900	85	1	in	in	ADP
ajlm-2900	85	2	january	january	PROPN
ajlm-2900	85	3	2020	2020	NUM
ajlm-2900	85	4	,	,	PUNCT
ajlm-2900	85	5	our	our	PRON
ajlm-2900	85	6	cost	cost	NOUN
ajlm-2900	85	7	to	to	PART
ajlm-2900	85	8	perform	perform	VERB
ajlm-2900	85	9	illumina	illumina	PROPN
ajlm-2900	85	10	wgs	wgs	NOUN
ajlm-2900	85	11	(	(	PUNCT
ajlm-2900	85	12	paired	pair	VERB
ajlm-2900	85	13	-	-	PUNCT
ajlm-2900	85	14	end	end	NOUN
ajlm-2900	85	15	sequencing	sequencing	NOUN
ajlm-2900	85	16	,	,	PUNCT
ajlm-2900	85	17	at	at	ADP
ajlm-2900	85	18	~80	~80	X
ajlm-2900	85	19	times	times	PROPN
ajlm-2900	85	20	coverage	coverage	PROPN
ajlm-2900	85	21	)	)	PUNCT
ajlm-2900	85	22	on	on	ADP
ajlm-2900	85	23	a	a	DET
ajlm-2900	85	24	single	single	ADJ
ajlm-2900	85	25	salmonella	salmonella	NOUN
ajlm-2900	85	26	isolate	isolate	NOUN
ajlm-2900	85	27	was	be	AUX
ajlm-2900	85	28	~r2510	~r2510	NUM
ajlm-2900	85	29	south	south	ADJ
ajlm-2900	85	30	african	african	ADJ
ajlm-2900	85	31	rand	rand	NOUN
ajlm-2900	85	32	(	(	PUNCT
ajlm-2900	85	33	zar	zar	NOUN
ajlm-2900	85	34	)	)	PUNCT
ajlm-2900	85	35	as	as	SCONJ
ajlm-2900	85	36	compared	compare	VERB
ajlm-2900	85	37	to	to	ADP
ajlm-2900	85	38	~r1210	~r1210	PROPN
ajlm-2900	85	39	zar	zar	NOUN
ajlm-2900	85	40	in	in	ADP
ajlm-2900	85	41	december	december	PROPN
ajlm-2900	85	42	2023	2023	NUM
ajlm-2900	85	43	(	(	PUNCT
ajlm-2900	85	44	r0.055	r0.055	VERB
ajlm-2900	85	45	zar	zar	VERB
ajlm-2900	85	46	to	to	ADP
ajlm-2900	85	47	united	united	PROPN
ajlm-2900	85	48	states	states	PROPN
ajlm-2900	85	49	dollar	dollar	NOUN
ajlm-2900	85	50	conversion	conversion	NOUN
ajlm-2900	85	51	rate	rate	NOUN
ajlm-2900	85	52	,	,	PUNCT
ajlm-2900	85	53	on	on	ADP
ajlm-2900	85	54	10	10	NUM
ajlm-2900	85	55	march	march	NOUN
ajlm-2900	85	56	2025	2025	NUM
ajlm-2900	85	57	)	)	PUNCT
ajlm-2900	85	58	.	.	PUNCT
ajlm-2900	86	1	so	so	ADV
ajlm-2900	86	2	,	,	PUNCT
ajlm-2900	86	3	wgs	wgs	NOUN
ajlm-2900	86	4	has	have	AUX
ajlm-2900	86	5	become	become	VERB
ajlm-2900	86	6	more	more	ADV
ajlm-2900	86	7	affordable	affordable	ADJ
ajlm-2900	86	8	with	with	ADP
ajlm-2900	86	9	time	time	NOUN
ajlm-2900	86	10	.	.	PUNCT
ajlm-2900	87	1	sharing	share	VERB
ajlm-2900	87	2	of	of	ADP
ajlm-2900	87	3	whole	whole	ADJ
ajlm-2900	87	4	-	-	PUNCT
ajlm-2900	87	5	genome	genome	NOUN
ajlm-2900	87	6	sequencing	sequence	VERB
ajlm-2900	87	7	data	datum	NOUN
ajlm-2900	87	8	and	and	CCONJ
ajlm-2900	87	9	public	public	ADJ
ajlm-2900	87	10	health	health	NOUN
ajlm-2900	87	11	action	action	NOUN
ajlm-2900	87	12	all	all	DET
ajlm-2900	87	13	wgs	wgs	NOUN
ajlm-2900	87	14	data	datum	NOUN
ajlm-2900	87	15	were	be	AUX
ajlm-2900	87	16	uploaded	upload	VERB
ajlm-2900	87	17	and	and	CCONJ
ajlm-2900	87	18	shared	share	VERB
ajlm-2900	87	19	at	at	ADP
ajlm-2900	87	20	the	the	DET
ajlm-2900	87	21	enterobase	enterobase	PROPN
ajlm-2900	87	22	salmonella	salmonella	PROPN
ajlm-2900	87	23	database	database	NOUN
ajlm-2900	87	24	(	(	PUNCT
ajlm-2900	87	25	http://enterobase.warwick.ac.uk/species/index/senterica	http://enterobase.warwick.ac.uk/species/index/senterica	PROPN
ajlm-2900	87	26	)	)	PUNCT
ajlm-2900	87	27	.	.	PUNCT
ajlm-2900	88	1	data	datum	NOUN
ajlm-2900	88	2	shared	share	VERB
ajlm-2900	88	3	at	at	ADP
ajlm-2900	88	4	enterobase	enterobase	NOUN
ajlm-2900	88	5	are	be	AUX
ajlm-2900	88	6	immediately	immediately	ADV
ajlm-2900	88	7	made	make	VERB
ajlm-2900	88	8	available	available	ADJ
ajlm-2900	88	9	publicly	publicly	ADV
ajlm-2900	88	10	to	to	PART
ajlm-2900	88	11	benefit	benefit	VERB
ajlm-2900	88	12	the	the	DET
ajlm-2900	88	13	global	global	ADJ
ajlm-2900	88	14	public	public	ADJ
ajlm-2900	88	15	health	health	NOUN
ajlm-2900	88	16	and	and	CCONJ
ajlm-2900	88	17	research	research	NOUN
ajlm-2900	88	18	community	community	NOUN
ajlm-2900	88	19	.	.	PUNCT
ajlm-2900	89	1	enterobase	enterobase	PROPN
ajlm-2900	89	2	also	also	ADV
ajlm-2900	89	3	auto	auto	NOUN
ajlm-2900	89	4	-	-	PUNCT
ajlm-2900	89	5	uploads	upload	VERB
ajlm-2900	89	6	data	datum	NOUN
ajlm-2900	89	7	to	to	ADP
ajlm-2900	89	8	the	the	DET
ajlm-2900	89	9	sequence	sequence	NOUN
ajlm-2900	89	10	read	read	VERB
ajlm-2900	89	11	archive	archive	NOUN
ajlm-2900	89	12	,	,	PUNCT
ajlm-2900	89	13	following	follow	VERB
ajlm-2900	89	14	which	which	DET
ajlm-2900	89	15	project	project	NOUN
ajlm-2900	89	16	and	and	CCONJ
ajlm-2900	89	17	sample	sample	NOUN
ajlm-2900	89	18	accession	accession	NOUN
ajlm-2900	89	19	numbers	number	NOUN
ajlm-2900	89	20	are	be	AUX
ajlm-2900	89	21	assigned	assign	VERB
ajlm-2900	89	22	to	to	PART
ajlm-2900	89	23	isolate	isolate	VERB
ajlm-2900	89	24	data	datum	NOUN
ajlm-2900	89	25	.	.	PUNCT
ajlm-2900	90	1	as	as	ADP
ajlm-2900	90	2	of	of	ADP
ajlm-2900	90	3	10	10	NUM
ajlm-2900	90	4	march	march	NOUN
ajlm-2900	90	5	,	,	PUNCT
ajlm-2900	90	6	2025	2025	NUM
ajlm-2900	90	7	,	,	PUNCT
ajlm-2900	90	8	enterobase	enterobase	NOUN
ajlm-2900	90	9	ranked	rank	VERB
ajlm-2900	90	10	south	south	PROPN
ajlm-2900	90	11	africa	africa	PROPN
ajlm-2900	90	12	as	as	ADP
ajlm-2900	90	13	country	country	NOUN
ajlm-2900	90	14	number	number	NOUN
ajlm-2900	90	15	one	one	NUM
ajlm-2900	90	16	with	with	ADP
ajlm-2900	90	17	respect	respect	NOUN
ajlm-2900	90	18	to	to	ADP
ajlm-2900	90	19	the	the	DET
ajlm-2900	90	20	number	number	NOUN
ajlm-2900	90	21	of	of	ADP
ajlm-2900	90	22	salmonella	salmonella	NOUN
ajlm-2900	90	23	genome	genome	NOUN
ajlm-2900	90	24	submissions	submission	NOUN
ajlm-2900	90	25	from	from	ADP
ajlm-2900	90	26	africa	africa	PROPN
ajlm-2900	90	27	,	,	PUNCT
ajlm-2900	90	28	and	and	CCONJ
ajlm-2900	90	29	seventh	seventh	ADJ
ajlm-2900	90	30	with	with	ADP
ajlm-2900	90	31	respect	respect	NOUN
ajlm-2900	90	32	to	to	ADP
ajlm-2900	90	33	global	global	ADJ
ajlm-2900	90	34	country	country	NOUN
ajlm-2900	90	35	submissions	submission	NOUN
ajlm-2900	90	36	.	.	PUNCT
ajlm-2900	91	1	as	as	SCONJ
ajlm-2900	91	2	required	require	VERB
ajlm-2900	91	3	,	,	PUNCT
ajlm-2900	91	4	salmonella	salmonella	NOUN
ajlm-2900	91	5	wgs	wgs	NOUN
ajlm-2900	91	6	data	datum	NOUN
ajlm-2900	91	7	was	be	AUX
ajlm-2900	91	8	presented	present	VERB
ajlm-2900	91	9	and	and	CCONJ
ajlm-2900	91	10	discussed	discuss	VERB
ajlm-2900	91	11	at	at	ADP
ajlm-2900	91	12	the	the	DET
ajlm-2900	91	13	nicd	nicd	PROPN
ajlm-2900	91	14	weekly	weekly	ADJ
ajlm-2900	91	15	‘	'	PUNCT
ajlm-2900	91	16	communicable	communicable	ADJ
ajlm-2900	91	17	diseases	disease	NOUN
ajlm-2900	91	18	meetings	meeting	NOUN
ajlm-2900	91	19	’	'	PUNCT
ajlm-2900	91	20	.	.	PUNCT
ajlm-2900	92	1	these	these	DET
ajlm-2900	92	2	meetings	meeting	NOUN
ajlm-2900	92	3	include	include	VERB
ajlm-2900	92	4	representatives	representative	NOUN
ajlm-2900	92	5	from	from	ADP
ajlm-2900	92	6	the	the	DET
ajlm-2900	92	7	nicd	nicd	PROPN
ajlm-2900	92	8	outbreak	outbreak	PROPN
ajlm-2900	92	9	response	response	PROPN
ajlm-2900	92	10	unit	unit	NOUN
ajlm-2900	92	11	,	,	PUNCT
ajlm-2900	92	12	all	all	DET
ajlm-2900	92	13	nicd	nicd	NOUN
ajlm-2900	92	14	centres	centre	NOUN
ajlm-2900	92	15	,	,	PUNCT
ajlm-2900	92	16	and	and	CCONJ
ajlm-2900	92	17	epidemiologists	epidemiologist	NOUN
ajlm-2900	92	18	from	from	ADP
ajlm-2900	92	19	all	all	DET
ajlm-2900	92	20	provinces	province	NOUN
ajlm-2900	92	21	across	across	ADP
ajlm-2900	92	22	south	south	PROPN
ajlm-2900	92	23	africa	africa	PROPN
ajlm-2900	92	24	.	.	PUNCT
ajlm-2900	93	1	matters	matter	NOUN
ajlm-2900	93	2	discussed	discuss	VERB
ajlm-2900	93	3	included	include	VERB
ajlm-2900	93	4	:	:	PUNCT
ajlm-2900	93	5	any	any	DET
ajlm-2900	93	6	interesting	interesting	ADJ
ajlm-2900	93	7	findings	finding	NOUN
ajlm-2900	93	8	related	relate	VERB
ajlm-2900	93	9	to	to	ADP
ajlm-2900	93	10	routine	routine	ADJ
ajlm-2900	93	11	disease	disease	NOUN
ajlm-2900	93	12	surveillance	surveillance	NOUN
ajlm-2900	93	13	activities	activity	NOUN
ajlm-2900	93	14	,	,	PUNCT
ajlm-2900	93	15	trends	trend	NOUN
ajlm-2900	93	16	in	in	ADP
ajlm-2900	93	17	disease	disease	NOUN
ajlm-2900	93	18	notifications	notification	NOUN
ajlm-2900	93	19	and	and	CCONJ
ajlm-2900	93	20	reporting	reporting	NOUN
ajlm-2900	93	21	,	,	PUNCT
ajlm-2900	93	22	reports	report	NOUN
ajlm-2900	93	23	of	of	ADP
ajlm-2900	93	24	disease	disease	NOUN
ajlm-2900	93	25	clusters	cluster	NOUN
ajlm-2900	93	26	,	,	PUNCT
ajlm-2900	93	27	outbreak	outbreak	NOUN
ajlm-2900	93	28	investigations	investigation	NOUN
ajlm-2900	93	29	,	,	PUNCT
ajlm-2900	93	30	and	and	CCONJ
ajlm-2900	93	31	new	new	ADJ
ajlm-2900	93	32	/	/	SYM
ajlm-2900	93	33	emerging	emerge	VERB
ajlm-2900	93	34	cases	case	NOUN
ajlm-2900	93	35	of	of	ADP
ajlm-2900	93	36	diseases	disease	NOUN
ajlm-2900	93	37	.	.	PUNCT
ajlm-2900	94	1	centre	centre	NOUN
ajlm-2900	94	2	for	for	ADP
ajlm-2900	94	3	enteric	enteric	ADJ
ajlm-2900	94	4	disease	disease	NOUN
ajlm-2900	94	5	will	will	AUX
ajlm-2900	94	6	report	report	VERB
ajlm-2900	94	7	on	on	ADP
ajlm-2900	94	8	any	any	DET
ajlm-2900	94	9	significant	significant	ADJ
ajlm-2900	94	10	findings	finding	NOUN
ajlm-2900	94	11	related	relate	VERB
ajlm-2900	94	12	to	to	ADP
ajlm-2900	94	13	analysis	analysis	NOUN
ajlm-2900	94	14	of	of	ADP
ajlm-2900	94	15	salmonella	salmonella	NOUN
ajlm-2900	94	16	wgs	wgs	NOUN
ajlm-2900	94	17	data	datum	NOUN
ajlm-2900	94	18	,	,	PUNCT
ajlm-2900	94	19	including	include	VERB
ajlm-2900	94	20	clusters	cluster	NOUN
ajlm-2900	94	21	identified	identify	VERB
ajlm-2900	94	22	and	and	CCONJ
ajlm-2900	94	23	outbreak	outbreak	NOUN
ajlm-2900	94	24	investigations	investigation	NOUN
ajlm-2900	94	25	.	.	PUNCT
ajlm-2900	95	1	as	as	SCONJ
ajlm-2900	95	2	required	require	VERB
ajlm-2900	95	3	,	,	PUNCT
ajlm-2900	95	4	representatives	representative	NOUN
ajlm-2900	95	5	of	of	ADP
ajlm-2900	95	6	our	our	PRON
ajlm-2900	95	7	outbreak	outbreak	NOUN
ajlm-2900	95	8	response	response	NOUN
ajlm-2900	95	9	unit	unit	NOUN
ajlm-2900	95	10	will	will	AUX
ajlm-2900	95	11	communicate	communicate	VERB
ajlm-2900	95	12	with	with	ADP
ajlm-2900	95	13	our	our	PRON
ajlm-2900	95	14	department	department	PROPN
ajlm-2900	95	15	of	of	ADP
ajlm-2900	95	16	health	health	NOUN
ajlm-2900	95	17	on	on	ADP
ajlm-2900	95	18	all	all	DET
ajlm-2900	95	19	relevant	relevant	ADJ
ajlm-2900	95	20	matters	matter	NOUN
ajlm-2900	95	21	.	.	PUNCT
ajlm-2900	96	1	so	so	ADV
ajlm-2900	96	2	,	,	PUNCT
ajlm-2900	96	3	the	the	DET
ajlm-2900	96	4	chain	chain	NOUN
ajlm-2900	96	5	of	of	ADP
ajlm-2900	96	6	custody	custody	NOUN
ajlm-2900	96	7	for	for	ADP
ajlm-2900	96	8	reporting	report	VERB
ajlm-2900	96	9	wgs	wgs	NOUN
ajlm-2900	96	10	data	datum	NOUN
ajlm-2900	96	11	for	for	ADP
ajlm-2900	96	12	public	public	ADJ
ajlm-2900	96	13	health	health	NOUN
ajlm-2900	96	14	action	action	NOUN
ajlm-2900	96	15	is	be	AUX
ajlm-2900	96	16	:	:	PUNCT
ajlm-2900	96	17	nicd	nicd	PROPN
ajlm-2900	96	18	centre	centre	PROPN
ajlm-2900	96	19	>	>	X
ajlm-2900	96	20	nicd	nicd	PROPN
ajlm-2900	96	21	outbreak	outbreak	PROPN
ajlm-2900	96	22	response	response	PROPN
ajlm-2900	96	23	unit	unit	PROPN
ajlm-2900	96	24	>	>	X
ajlm-2900	96	25	department	department	PROPN
ajlm-2900	96	26	of	of	ADP
ajlm-2900	96	27	health	health	PROPN
ajlm-2900	96	28	>	>	X
ajlm-2900	96	29	public	public	ADJ
ajlm-2900	96	30	notification	notification	NOUN
ajlm-2900	96	31	(	(	PUNCT
ajlm-2900	96	32	as	as	SCONJ
ajlm-2900	96	33	required	require	VERB
ajlm-2900	96	34	)	)	PUNCT
ajlm-2900	96	35	,	,	PUNCT
ajlm-2900	96	36	and	and	CCONJ
ajlm-2900	96	37	further	further	ADJ
ajlm-2900	96	38	sharing	sharing	NOUN
ajlm-2900	96	39	of	of	ADP
ajlm-2900	96	40	information	information	NOUN
ajlm-2900	96	41	.	.	PUNCT
ajlm-2900	97	1	top	top	NOUN
ajlm-2900	97	2	(	(	PUNCT
ajlm-2900	97	3	most	most	ADV
ajlm-2900	97	4	common	common	ADJ
ajlm-2900	97	5	)	)	PUNCT
ajlm-2900	97	6	eight	eight	NUM
ajlm-2900	97	7	salmonella	salmonella	NOUN
ajlm-2900	97	8	serovars	serovar	NOUN
ajlm-2900	97	9	and	and	CCONJ
ajlm-2900	97	10	subspecies	subspecie	NOUN
ajlm-2900	97	11	in	in	ADP
ajlm-2900	97	12	south	south	PROPN
ajlm-2900	97	13	africa	africa	PROPN
ajlm-2900	97	14	from	from	ADP
ajlm-2900	97	15	2020	2020	NUM
ajlm-2900	97	16	to	to	ADP
ajlm-2900	97	17	2023	2023	NUM
ajlm-2900	97	18	,	,	PUNCT
ajlm-2900	97	19	8006	8006	NUM
ajlm-2900	97	20	isolates	isolate	NOUN
ajlm-2900	97	21	of	of	ADP
ajlm-2900	97	22	salmonella	salmonella	NOUN
ajlm-2900	97	23	were	be	AUX
ajlm-2900	97	24	analysed	analyse	VERB
ajlm-2900	97	25	using	use	VERB
ajlm-2900	97	26	wgs	wgs	NOUN
ajlm-2900	97	27	.	.	PUNCT
ajlm-2900	98	1	one	one	NUM
ajlm-2900	98	2	hundred	hundred	NUM
ajlm-2900	98	3	and	and	CCONJ
ajlm-2900	98	4	thirty	thirty	NUM
ajlm-2900	98	5	distinctive	distinctive	ADJ
ajlm-2900	98	6	salmonella	salmonella	NOUN
ajlm-2900	98	7	serovars	serovar	NOUN
ajlm-2900	98	8	or	or	CCONJ
ajlm-2900	98	9	subspecies	subspecie	NOUN
ajlm-2900	98	10	were	be	AUX
ajlm-2900	98	11	identified	identify	VERB
ajlm-2900	98	12	(	(	PUNCT
ajlm-2900	98	13	figure	figure	NOUN
ajlm-2900	98	14	1	1	NUM
ajlm-2900	98	15	)	)	PUNCT
ajlm-2900	98	16	.	.	PUNCT
ajlm-2900	99	1	salmonella	salmonella	NOUN
ajlm-2900	99	2	enteritidis	enteritidi	NOUN
ajlm-2900	99	3	(	(	PUNCT
ajlm-2900	99	4	4271/8006	4271/8006	NUM
ajlm-2900	99	5	;	;	PUNCT
ajlm-2900	99	6	53.3	53.3	NUM
ajlm-2900	99	7	%	%	NOUN
ajlm-2900	99	8	)	)	PUNCT
ajlm-2900	99	9	and	and	CCONJ
ajlm-2900	99	10	salmonella	salmonella	NOUN
ajlm-2900	99	11	typhimurium	typhimurium	PRON
ajlm-2900	99	12	(	(	PUNCT
ajlm-2900	99	13	1430/8006	1430/8006	NUM
ajlm-2900	99	14	;	;	PUNCT
ajlm-2900	99	15	17.9	17.9	NUM
ajlm-2900	99	16	%	%	NOUN
ajlm-2900	99	17	)	)	PUNCT
ajlm-2900	99	18	were	be	AUX
ajlm-2900	99	19	the	the	DET
ajlm-2900	99	20	most	most	ADV
ajlm-2900	99	21	prevalent	prevalent	ADJ
ajlm-2900	99	22	serovars	serovar	NOUN
ajlm-2900	99	23	,	,	PUNCT
ajlm-2900	99	24	accounting	account	VERB
ajlm-2900	99	25	for	for	ADP
ajlm-2900	99	26	71.2	71.2	NUM
ajlm-2900	99	27	%	%	NOUN
ajlm-2900	99	28	of	of	ADP
ajlm-2900	99	29	all	all	DET
ajlm-2900	99	30	isolates	isolate	NOUN
ajlm-2900	99	31	.	.	PUNCT
ajlm-2900	100	1	the	the	DET
ajlm-2900	100	2	following	follow	VERB
ajlm-2900	100	3	serovars	serovar	NOUN
ajlm-2900	100	4	or	or	CCONJ
ajlm-2900	100	5	subspecies	subspecie	NOUN
ajlm-2900	100	6	completed	complete	VERB
ajlm-2900	100	7	our	our	PRON
ajlm-2900	100	8	top	top	ADJ
ajlm-2900	100	9	(	(	PUNCT
ajlm-2900	100	10	most	most	ADV
ajlm-2900	100	11	common	common	ADJ
ajlm-2900	100	12	)	)	PUNCT
ajlm-2900	100	13	eight	eight	NUM
ajlm-2900	100	14	:	:	PUNCT
ajlm-2900	100	15	salmonella	salmonella	NOUN
ajlm-2900	100	16	typhi	typhi	NOUN
ajlm-2900	100	17	(	(	PUNCT
ajlm-2900	100	18	482/8006	482/8006	NUM
ajlm-2900	100	19	;	;	PUNCT
ajlm-2900	100	20	6.0	6.0	NUM
ajlm-2900	100	21	%	%	NOUN
ajlm-2900	100	22	)	)	PUNCT
ajlm-2900	100	23	,	,	PUNCT
ajlm-2900	100	24	s.	s.	PROPN
ajlm-2900	100	25	enterica	enterica	PROPN
ajlm-2900	100	26	subspecies	subspecies	PROPN
ajlm-2900	100	27	salamae	salamae	VERB
ajlm-2900	100	28	(	(	PUNCT
ajlm-2900	100	29	279/8006	279/8006	NUM
ajlm-2900	100	30	;	;	PUNCT
ajlm-2900	100	31	3.5	3.5	NUM
ajlm-2900	100	32	%	%	NOUN
ajlm-2900	100	33	)	)	PUNCT
ajlm-2900	100	34	,	,	PUNCT
ajlm-2900	100	35	salmonella	salmonella	NOUN
ajlm-2900	100	36	isangi	isangi	PROPN
ajlm-2900	100	37	(	(	PUNCT
ajlm-2900	100	38	167/8006	167/8006	NUM
ajlm-2900	100	39	;	;	PUNCT
ajlm-2900	100	40	2.1	2.1	NUM
ajlm-2900	100	41	%	%	NOUN
ajlm-2900	100	42	)	)	PUNCT
ajlm-2900	100	43	,	,	PUNCT
ajlm-2900	100	44	salmonella	salmonella	PROPN
ajlm-2900	100	45	dublin	dublin	PROPN
ajlm-2900	100	46	(	(	PUNCT
ajlm-2900	100	47	114/8006	114/8006	NUM
ajlm-2900	100	48	;	;	PUNCT
ajlm-2900	100	49	1.4	1.4	NUM
ajlm-2900	100	50	%	%	NOUN
ajlm-2900	100	51	)	)	PUNCT
ajlm-2900	100	52	,	,	PUNCT
ajlm-2900	100	53	salmonella	salmonella	NOUN
ajlm-2900	100	54	muenchen	muenchen	NOUN
ajlm-2900	100	55	(	(	PUNCT
ajlm-2900	100	56	108/8006	108/8006	NUM
ajlm-2900	100	57	;	;	PUNCT
ajlm-2900	100	58	1.3	1.3	NUM
ajlm-2900	100	59	%	%	NOUN
ajlm-2900	100	60	)	)	PUNCT
ajlm-2900	100	61	,	,	PUNCT
ajlm-2900	100	62	and	and	CCONJ
ajlm-2900	100	63	salmonella	salmonella	NOUN
ajlm-2900	100	64	infantis	infantis	NOUN
ajlm-2900	100	65	(	(	PUNCT
ajlm-2900	100	66	98/8006	98/8006	NUM
ajlm-2900	100	67	;	;	PUNCT
ajlm-2900	100	68	1.2	1.2	NUM
ajlm-2900	100	69	%	%	NOUN
ajlm-2900	100	70	)	)	PUNCT
ajlm-2900	100	71	.	.	PUNCT
ajlm-2900	101	1	for	for	ADP
ajlm-2900	101	2	salmonella	salmonella	NOUN
ajlm-2900	101	3	typhi	typhi	VERB
ajlm-2900	101	4	,	,	PUNCT
ajlm-2900	101	5	414/482	414/482	PROPN
ajlm-2900	101	6	(	(	PUNCT
ajlm-2900	101	7	85.9	85.9	NUM
ajlm-2900	101	8	%	%	NOUN
ajlm-2900	101	9	)	)	PUNCT
ajlm-2900	101	10	were	be	AUX
ajlm-2900	101	11	of	of	ADP
ajlm-2900	101	12	the	the	DET
ajlm-2900	101	13	h58	h58	PROPN
ajlm-2900	101	14	haplotype	haplotype	NOUN
ajlm-2900	101	15	(	(	PUNCT
ajlm-2900	101	16	genotype	genotype	NOUN
ajlm-2900	101	17	4.3.1	4.3.1	NUM
ajlm-2900	101	18	)	)	PUNCT
ajlm-2900	101	19	strain	strain	NOUN
ajlm-2900	101	20	(	(	PUNCT
ajlm-2900	101	21	figure	figure	NOUN
ajlm-2900	101	22	2	2	NUM
ajlm-2900	101	23	)	)	PUNCT
ajlm-2900	101	24	.	.	PUNCT
ajlm-2900	102	1	for	for	ADP
ajlm-2900	102	2	salmonella	salmonella	NOUN
ajlm-2900	102	3	typhimurium	typhimurium	NOUN
ajlm-2900	102	4	,	,	PUNCT
ajlm-2900	102	5	269/1430	269/1430	NUM
ajlm-2900	102	6	(	(	PUNCT
ajlm-2900	102	7	18.8	18.8	NUM
ajlm-2900	102	8	%	%	NOUN
ajlm-2900	102	9	)	)	PUNCT
ajlm-2900	102	10	isolates	isolate	NOUN
ajlm-2900	102	11	were	be	AUX
ajlm-2900	102	12	of	of	ADP
ajlm-2900	102	13	the	the	DET
ajlm-2900	102	14	st313	st313	PROPN
ajlm-2900	102	15	variant	variant	NOUN
ajlm-2900	102	16	;	;	PUNCT
ajlm-2900	102	17	while	while	SCONJ
ajlm-2900	102	18	109/1430	109/1430	NUM
ajlm-2900	102	19	(	(	PUNCT
ajlm-2900	102	20	7.6	7.6	NUM
ajlm-2900	102	21	%	%	NOUN
ajlm-2900	102	22	)	)	PUNCT
ajlm-2900	102	23	isolates	isolate	NOUN
ajlm-2900	102	24	were	be	AUX
ajlm-2900	102	25	of	of	ADP
ajlm-2900	102	26	the	the	DET
ajlm-2900	102	27	monophasic	monophasic	ADJ
ajlm-2900	102	28	variant	variant	NOUN
ajlm-2900	102	29	(	(	PUNCT
ajlm-2900	102	30	1,4,[5],12	1,4,[5],12	NOUN
ajlm-2900	102	31	:	:	PUNCT
ajlm-2900	102	32	i:-	i:-	NUM
ajlm-2900	102	33	)	)	PUNCT
ajlm-2900	102	34	.	.	PUNCT
ajlm-2900	103	1	figure	figure	VERB
ajlm-2900	103	2	1	1	NUM
ajlm-2900	103	3	:	:	PUNCT
ajlm-2900	103	4	minimum	minimum	ADJ
ajlm-2900	103	5	spanning	span	VERB
ajlm-2900	103	6	tree	tree	NOUN
ajlm-2900	103	7	created	create	VERB
ajlm-2900	103	8	using	use	VERB
ajlm-2900	103	9	cgmlst	cgmlst	NOUN
ajlm-2900	103	10	data	datum	NOUN
ajlm-2900	103	11	for	for	ADP
ajlm-2900	103	12	salmonella	salmonella	NOUN
ajlm-2900	103	13	isolates	isolate	NOUN
ajlm-2900	103	14	(	(	PUNCT
ajlm-2900	103	15	n	n	NOUN
ajlm-2900	103	16	=	=	NUM
ajlm-2900	103	17	8006	8006	NUM
ajlm-2900	103	18	)	)	PUNCT
ajlm-2900	103	19	,	,	PUNCT
ajlm-2900	103	20	south	south	PROPN
ajlm-2900	103	21	africa	africa	PROPN
ajlm-2900	103	22	,	,	PUNCT
ajlm-2900	103	23	2020–2023	2020–2023	NUM
ajlm-2900	103	24	.	.	PUNCT
ajlm-2900	104	1	the	the	DET
ajlm-2900	104	2	spherical	spherical	ADJ
ajlm-2900	104	3	nodes	node	NOUN
ajlm-2900	104	4	represent	represent	VERB
ajlm-2900	104	5	isolates	isolate	NOUN
ajlm-2900	104	6	.	.	PUNCT
ajlm-2900	105	1	the	the	PRON
ajlm-2900	105	2	larger	large	ADJ
ajlm-2900	105	3	the	the	DET
ajlm-2900	105	4	spherical	spherical	ADJ
ajlm-2900	105	5	node	node	NOUN
ajlm-2900	105	6	,	,	PUNCT
ajlm-2900	105	7	the	the	DET
ajlm-2900	105	8	more	more	ADJ
ajlm-2900	105	9	isolates	isolate	NOUN
ajlm-2900	105	10	which	which	PRON
ajlm-2900	105	11	are	be	AUX
ajlm-2900	105	12	indicated	indicate	VERB
ajlm-2900	105	13	.	.	PUNCT
ajlm-2900	106	1	the	the	DET
ajlm-2900	106	2	figure	figure	NOUN
ajlm-2900	106	3	legend	legend	NOUN
ajlm-2900	106	4	lists	list	VERB
ajlm-2900	106	5	salmonella	salmonella	NOUN
ajlm-2900	106	6	serovars	serovar	NOUN
ajlm-2900	106	7	and	and	CCONJ
ajlm-2900	106	8	subspecies	subspecie	NOUN
ajlm-2900	106	9	identified	identify	VERB
ajlm-2900	106	10	,	,	PUNCT
ajlm-2900	106	11	in	in	ADP
ajlm-2900	106	12	order	order	NOUN
ajlm-2900	106	13	from	from	ADP
ajlm-2900	106	14	highest	high	ADJ
ajlm-2900	106	15	to	to	PART
ajlm-2900	106	16	lowest	low	ADJ
ajlm-2900	106	17	number	number	NOUN
ajlm-2900	106	18	of	of	ADP
ajlm-2900	106	19	isolates	isolate	NOUN
ajlm-2900	106	20	.	.	PUNCT
ajlm-2900	107	1	figure	figure	NOUN
ajlm-2900	107	2	2	2	NUM
ajlm-2900	107	3	:	:	PUNCT
ajlm-2900	107	4	minimum	minimum	ADJ
ajlm-2900	107	5	spanning	span	VERB
ajlm-2900	107	6	tree	tree	NOUN
ajlm-2900	107	7	created	create	VERB
ajlm-2900	107	8	using	use	VERB
ajlm-2900	107	9	cgmlst	cgmlst	NOUN
ajlm-2900	107	10	data	datum	NOUN
ajlm-2900	107	11	for	for	ADP
ajlm-2900	107	12	salmonella	salmonella	NOUN
ajlm-2900	107	13	typhi	typhi	NOUN
ajlm-2900	107	14	isolates	isolate	NOUN
ajlm-2900	107	15	(	(	PUNCT
ajlm-2900	107	16	n	n	NOUN
ajlm-2900	107	17	=	=	SYM
ajlm-2900	107	18	482	482	NUM
ajlm-2900	107	19	)	)	PUNCT
ajlm-2900	107	20	,	,	PUNCT
ajlm-2900	107	21	south	south	PROPN
ajlm-2900	107	22	africa	africa	PROPN
ajlm-2900	107	23	,	,	PUNCT
ajlm-2900	107	24	2020–2023	2020–2023	NUM
ajlm-2900	107	25	.	.	PUNCT
ajlm-2900	108	1	the	the	DET
ajlm-2900	108	2	spherical	spherical	ADJ
ajlm-2900	108	3	nodes	node	NOUN
ajlm-2900	108	4	represent	represent	VERB
ajlm-2900	108	5	isolates	isolate	NOUN
ajlm-2900	108	6	.	.	PUNCT
ajlm-2900	109	1	the	the	PRON
ajlm-2900	109	2	larger	large	ADJ
ajlm-2900	109	3	the	the	DET
ajlm-2900	109	4	spherical	spherical	ADJ
ajlm-2900	109	5	node	node	NOUN
ajlm-2900	109	6	,	,	PUNCT
ajlm-2900	109	7	the	the	DET
ajlm-2900	109	8	more	more	ADJ
ajlm-2900	109	9	isolates	isolate	NOUN
ajlm-2900	109	10	which	which	PRON
ajlm-2900	109	11	are	be	AUX
ajlm-2900	109	12	indicated	indicate	VERB
ajlm-2900	109	13	.	.	PUNCT
ajlm-2900	110	1	the	the	DET
ajlm-2900	110	2	number	number	NOUN
ajlm-2900	110	3	of	of	ADP
ajlm-2900	110	4	segments	segment	NOUN
ajlm-2900	110	5	within	within	ADP
ajlm-2900	110	6	a	a	DET
ajlm-2900	110	7	spherical	spherical	ADJ
ajlm-2900	110	8	node	node	NOUN
ajlm-2900	110	9	is	be	AUX
ajlm-2900	110	10	representative	representative	NOUN
ajlm-2900	110	11	of	of	ADP
ajlm-2900	110	12	the	the	DET
ajlm-2900	110	13	number	number	NOUN
ajlm-2900	110	14	of	of	ADP
ajlm-2900	110	15	isolates	isolate	NOUN
ajlm-2900	110	16	.	.	PUNCT
ajlm-2900	111	1	the	the	DET
ajlm-2900	111	2	number	number	NOUN
ajlm-2900	111	3	values	value	NOUN
ajlm-2900	111	4	between	between	ADP
ajlm-2900	111	5	adjoining	adjoining	ADJ
ajlm-2900	111	6	nodes	node	NOUN
ajlm-2900	111	7	specify	specify	VERB
ajlm-2900	111	8	the	the	DET
ajlm-2900	111	9	number	number	NOUN
ajlm-2900	111	10	of	of	ADP
ajlm-2900	111	11	allele	allele	NOUN
ajlm-2900	111	12	differences	difference	NOUN
ajlm-2900	111	13	between	between	ADP
ajlm-2900	111	14	connecting	connect	VERB
ajlm-2900	111	15	nodes	node	NOUN
ajlm-2900	111	16	(	(	PUNCT
ajlm-2900	111	17	isolates	isolate	NOUN
ajlm-2900	111	18	)	)	PUNCT
ajlm-2900	111	19	.	.	PUNCT
ajlm-2900	112	1	the	the	DET
ajlm-2900	112	2	figure	figure	NOUN
ajlm-2900	112	3	legend	legend	NOUN
ajlm-2900	112	4	lists	list	VERB
ajlm-2900	112	5	the	the	DET
ajlm-2900	112	6	year	year	NOUN
ajlm-2900	112	7	of	of	ADP
ajlm-2900	112	8	isolation	isolation	NOUN
ajlm-2900	112	9	.	.	PUNCT
ajlm-2900	113	1	the	the	DET
ajlm-2900	113	2	cluster	cluster	NOUN
ajlm-2900	113	3	of	of	ADP
ajlm-2900	113	4	h58	h58	PROPN
ajlm-2900	113	5	haplotype	haplotype	NOUN
ajlm-2900	113	6	(	(	PUNCT
ajlm-2900	113	7	genotype	genotype	NOUN
ajlm-2900	113	8	4.3.1	4.3.1	NUM
ajlm-2900	113	9	)	)	PUNCT
ajlm-2900	113	10	strains	strain	NOUN
ajlm-2900	113	11	is	be	AUX
ajlm-2900	113	12	indicated	indicate	VERB
ajlm-2900	113	13	.	.	PUNCT
ajlm-2900	114	1	notable	notable	ADJ
ajlm-2900	114	2	clusters	cluster	NOUN
ajlm-2900	114	3	and	and	CCONJ
ajlm-2900	114	4	outbreak	outbreak	NOUN
ajlm-2900	114	5	investigations	investigation	NOUN
ajlm-2900	114	6	table	table	NOUN
ajlm-2900	114	7	1	1	NUM
ajlm-2900	114	8	provides	provide	VERB
ajlm-2900	114	9	a	a	DET
ajlm-2900	114	10	summary	summary	NOUN
ajlm-2900	114	11	of	of	ADP
ajlm-2900	114	12	notable	notable	ADJ
ajlm-2900	114	13	salmonella	salmonella	NOUN
ajlm-2900	114	14	clusters	cluster	NOUN
ajlm-2900	114	15	and	and	CCONJ
ajlm-2900	114	16	outbreaks	outbreak	NOUN
ajlm-2900	114	17	investigated	investigate	VERB
ajlm-2900	114	18	in	in	ADP
ajlm-2900	114	19	south	south	PROPN
ajlm-2900	114	20	africa	africa	PROPN
ajlm-2900	114	21	from	from	ADP
ajlm-2900	114	22	2020	2020	NUM
ajlm-2900	114	23	to	to	ADP
ajlm-2900	114	24	2023	2023	NUM
ajlm-2900	114	25	.	.	PUNCT
ajlm-2900	115	1	these	these	DET
ajlm-2900	115	2	investigations	investigation	NOUN
ajlm-2900	115	3	included	include	VERB
ajlm-2900	115	4	the	the	DET
ajlm-2900	115	5	following	following	ADJ
ajlm-2900	115	6	serovars	serovar	NOUN
ajlm-2900	115	7	:	:	PUNCT
ajlm-2900	115	8	salmonella	salmonella	NOUN
ajlm-2900	115	9	enteritidis	enteritidi	NOUN
ajlm-2900	115	10	,	,	PUNCT
ajlm-2900	115	11	salmonella	salmonella	NOUN
ajlm-2900	115	12	typhi	typhi	VERB
ajlm-2900	115	13	,	,	PUNCT
ajlm-2900	115	14	salmonella	salmonella	NOUN
ajlm-2900	115	15	typhimurium	typhimurium	NOUN
ajlm-2900	115	16	,	,	PUNCT
ajlm-2900	115	17	salmonella	salmonella	NOUN
ajlm-2900	115	18	isangi	isangi	PROPN
ajlm-2900	115	19	,	,	PUNCT
ajlm-2900	115	20	salmonella	salmonella	NOUN
ajlm-2900	115	21	panama	panama	PROPN
ajlm-2900	115	22	,	,	PUNCT
ajlm-2900	115	23	salmonella	salmonella	NOUN
ajlm-2900	115	24	vejle	vejle	NOUN
ajlm-2900	115	25	,	,	PUNCT
ajlm-2900	115	26	salmonella	salmonella	PROPN
ajlm-2900	115	27	newport	newport	PROPN
ajlm-2900	115	28	,	,	PUNCT
ajlm-2900	115	29	and	and	CCONJ
ajlm-2900	115	30	salmonella	salmonella	NOUN
ajlm-2900	115	31	muenchen	muenchen	NOUN
ajlm-2900	115	32	.	.	PUNCT
ajlm-2900	116	1	most	most	ADJ
ajlm-2900	116	2	investigations	investigation	NOUN
ajlm-2900	116	3	were	be	AUX
ajlm-2900	116	4	associated	associate	VERB
ajlm-2900	116	5	with	with	ADP
ajlm-2900	116	6	salmonella	salmonella	NOUN
ajlm-2900	116	7	enteritidis	enteritidi	NOUN
ajlm-2900	116	8	and	and	CCONJ
ajlm-2900	116	9	salmonella	salmonella	NOUN
ajlm-2900	116	10	typhi	typhi	ADV
ajlm-2900	116	11	.	.	PUNCT
ajlm-2900	117	1	figure	figure	VERB
ajlm-2900	117	2	3	3	NUM
ajlm-2900	117	3	shows	show	VERB
ajlm-2900	117	4	some	some	DET
ajlm-2900	117	5	clusters	cluster	NOUN
ajlm-2900	117	6	investigated	investigate	VERB
ajlm-2900	117	7	within	within	ADP
ajlm-2900	117	8	the	the	DET
ajlm-2900	117	9	background	background	NOUN
ajlm-2900	117	10	of	of	ADP
ajlm-2900	117	11	other	other	ADJ
ajlm-2900	117	12	circulating	circulate	VERB
ajlm-2900	117	13	isolates	isolate	NOUN
ajlm-2900	117	14	,	,	PUNCT
ajlm-2900	117	15	for	for	ADP
ajlm-2900	117	16	salmonella	salmonella	NOUN
ajlm-2900	117	17	enteritidis	enteritidi	NOUN
ajlm-2900	117	18	,	,	PUNCT
ajlm-2900	117	19	and	and	CCONJ
ajlm-2900	117	20	figure	figure	VERB
ajlm-2900	117	21	4	4	NUM
ajlm-2900	117	22	shows	show	VERB
ajlm-2900	117	23	the	the	DET
ajlm-2900	117	24	same	same	ADJ
ajlm-2900	117	25	for	for	ADP
ajlm-2900	117	26	salmonella	salmonella	NOUN
ajlm-2900	117	27	typhi	typhi	ADJ
ajlm-2900	117	28	.	.	PUNCT
ajlm-2900	118	1	figure	figure	VERB
ajlm-2900	118	2	3	3	NUM
ajlm-2900	118	3	:	:	PUNCT
ajlm-2900	118	4	snapshot	snapshot	NOUN
ajlm-2900	118	5	from	from	ADP
ajlm-2900	118	6	a	a	DET
ajlm-2900	118	7	minimum	minimum	ADJ
ajlm-2900	118	8	spanning	span	VERB
ajlm-2900	118	9	tree	tree	NOUN
ajlm-2900	118	10	created	create	VERB
ajlm-2900	118	11	using	use	VERB
ajlm-2900	118	12	cgmlst	cgmlst	NOUN
ajlm-2900	118	13	data	datum	NOUN
ajlm-2900	118	14	for	for	ADP
ajlm-2900	118	15	salmonella	salmonella	NOUN
ajlm-2900	118	16	enteritidis	enteritidi	NOUN
ajlm-2900	118	17	isolates	isolate	NOUN
ajlm-2900	118	18	,	,	PUNCT
ajlm-2900	118	19	south	south	PROPN
ajlm-2900	118	20	africa	africa	PROPN
ajlm-2900	118	21	,	,	PUNCT
ajlm-2900	118	22	2020–2023	2020–2023	NUM
ajlm-2900	118	23	.	.	PUNCT
ajlm-2900	119	1	the	the	DET
ajlm-2900	119	2	spherical	spherical	ADJ
ajlm-2900	119	3	nodes	node	NOUN
ajlm-2900	119	4	represent	represent	VERB
ajlm-2900	119	5	isolates	isolate	NOUN
ajlm-2900	119	6	.	.	PUNCT
ajlm-2900	120	1	the	the	PRON
ajlm-2900	120	2	larger	large	ADJ
ajlm-2900	120	3	the	the	DET
ajlm-2900	120	4	spherical	spherical	ADJ
ajlm-2900	120	5	node	node	NOUN
ajlm-2900	120	6	,	,	PUNCT
ajlm-2900	120	7	the	the	DET
ajlm-2900	120	8	more	more	ADJ
ajlm-2900	120	9	isolates	isolate	NOUN
ajlm-2900	120	10	which	which	PRON
ajlm-2900	120	11	are	be	AUX
ajlm-2900	120	12	indicated	indicate	VERB
ajlm-2900	120	13	.	.	PUNCT
ajlm-2900	121	1	the	the	DET
ajlm-2900	121	2	number	number	NOUN
ajlm-2900	121	3	of	of	ADP
ajlm-2900	121	4	segments	segment	NOUN
ajlm-2900	121	5	within	within	ADP
ajlm-2900	121	6	a	a	DET
ajlm-2900	121	7	spherical	spherical	ADJ
ajlm-2900	121	8	node	node	NOUN
ajlm-2900	121	9	is	be	AUX
ajlm-2900	121	10	representative	representative	NOUN
ajlm-2900	121	11	of	of	ADP
ajlm-2900	121	12	the	the	DET
ajlm-2900	121	13	number	number	NOUN
ajlm-2900	121	14	of	of	ADP
ajlm-2900	121	15	isolates	isolate	NOUN
ajlm-2900	121	16	.	.	PUNCT
ajlm-2900	122	1	the	the	DET
ajlm-2900	122	2	number	number	NOUN
ajlm-2900	122	3	values	value	NOUN
ajlm-2900	122	4	between	between	ADP
ajlm-2900	122	5	adjoining	adjoining	ADJ
ajlm-2900	122	6	nodes	node	NOUN
ajlm-2900	122	7	specify	specify	VERB
ajlm-2900	122	8	the	the	DET
ajlm-2900	122	9	number	number	NOUN
ajlm-2900	122	10	of	of	ADP
ajlm-2900	122	11	allele	allele	NOUN
ajlm-2900	122	12	differences	difference	NOUN
ajlm-2900	122	13	between	between	ADP
ajlm-2900	122	14	connecting	connect	VERB
ajlm-2900	122	15	nodes	node	NOUN
ajlm-2900	122	16	(	(	PUNCT
ajlm-2900	122	17	isolates	isolate	NOUN
ajlm-2900	122	18	)	)	PUNCT
ajlm-2900	122	19	.	.	PUNCT
ajlm-2900	123	1	the	the	DET
ajlm-2900	123	2	figure	figure	NOUN
ajlm-2900	123	3	legend	legend	NOUN
ajlm-2900	123	4	points	point	VERB
ajlm-2900	123	5	to	to	ADP
ajlm-2900	123	6	some	some	DET
ajlm-2900	123	7	notable	notable	ADJ
ajlm-2900	123	8	clusters	cluster	NOUN
ajlm-2900	123	9	investigated	investigate	VERB
ajlm-2900	123	10	,	,	PUNCT
ajlm-2900	123	11	of	of	ADP
ajlm-2900	123	12	which	which	PRON
ajlm-2900	123	13	details	detail	NOUN
ajlm-2900	123	14	are	be	AUX
ajlm-2900	123	15	described	describe	VERB
ajlm-2900	123	16	in	in	ADP
ajlm-2900	123	17	table	table	NOUN
ajlm-2900	123	18	1	1	NUM
ajlm-2900	123	19	.	.	PUNCT
ajlm-2900	124	1	figure	figure	VERB
ajlm-2900	124	2	4	4	NUM
ajlm-2900	124	3	:	:	PUNCT
ajlm-2900	124	4	minimum	minimum	ADJ
ajlm-2900	124	5	spanning	span	VERB
ajlm-2900	124	6	tree	tree	NOUN
ajlm-2900	124	7	created	create	VERB
ajlm-2900	124	8	using	use	VERB
ajlm-2900	124	9	cgmlst	cgmlst	NOUN
ajlm-2900	124	10	data	datum	NOUN
ajlm-2900	124	11	for	for	ADP
ajlm-2900	124	12	salmonella	salmonella	NOUN
ajlm-2900	124	13	typhi	typhi	NOUN
ajlm-2900	124	14	isolates	isolate	NOUN
ajlm-2900	124	15	(	(	PUNCT
ajlm-2900	124	16	n	n	NOUN
ajlm-2900	124	17	=	=	SYM
ajlm-2900	124	18	68	68	NUM
ajlm-2900	124	19	)	)	PUNCT
ajlm-2900	124	20	sourced	source	VERB
ajlm-2900	124	21	from	from	ADP
ajlm-2900	124	22	the	the	DET
ajlm-2900	124	23	western	western	ADJ
ajlm-2900	124	24	cape	cape	NOUN
ajlm-2900	124	25	province	province	NOUN
ajlm-2900	124	26	of	of	ADP
ajlm-2900	124	27	south	south	PROPN
ajlm-2900	124	28	africa	africa	PROPN
ajlm-2900	124	29	,	,	PUNCT
ajlm-2900	124	30	2020–2021	2020–2021	NUM
ajlm-2900	124	31	.	.	PUNCT
ajlm-2900	125	1	the	the	DET
ajlm-2900	125	2	spherical	spherical	ADJ
ajlm-2900	125	3	nodes	node	NOUN
ajlm-2900	125	4	represent	represent	VERB
ajlm-2900	125	5	isolates	isolate	NOUN
ajlm-2900	125	6	.	.	PUNCT
ajlm-2900	126	1	isolates	isolate	NOUN
ajlm-2900	126	2	showing	show	VERB
ajlm-2900	126	3	≤	≤	NUM
ajlm-2900	126	4	5	5	NUM
ajlm-2900	126	5	allelic	allelic	ADJ
ajlm-2900	126	6	differences	difference	NOUN
ajlm-2900	126	7	,	,	PUNCT
ajlm-2900	126	8	are	be	AUX
ajlm-2900	126	9	collapsed	collapse	VERB
ajlm-2900	126	10	together	together	ADV
ajlm-2900	126	11	into	into	ADP
ajlm-2900	126	12	a	a	DET
ajlm-2900	126	13	single	single	ADJ
ajlm-2900	126	14	spherical	spherical	ADJ
ajlm-2900	126	15	node	node	NOUN
ajlm-2900	126	16	.	.	PUNCT
ajlm-2900	127	1	the	the	PRON
ajlm-2900	127	2	larger	large	ADJ
ajlm-2900	127	3	the	the	DET
ajlm-2900	127	4	spherical	spherical	ADJ
ajlm-2900	127	5	node	node	NOUN
ajlm-2900	127	6	,	,	PUNCT
ajlm-2900	127	7	the	the	DET
ajlm-2900	127	8	more	more	ADJ
ajlm-2900	127	9	isolates	isolate	NOUN
ajlm-2900	127	10	which	which	PRON
ajlm-2900	127	11	are	be	AUX
ajlm-2900	127	12	indicated	indicate	VERB
ajlm-2900	127	13	.	.	PUNCT
ajlm-2900	128	1	the	the	DET
ajlm-2900	128	2	number	number	NOUN
ajlm-2900	128	3	of	of	ADP
ajlm-2900	128	4	segments	segment	NOUN
ajlm-2900	128	5	within	within	ADP
ajlm-2900	128	6	a	a	DET
ajlm-2900	128	7	spherical	spherical	ADJ
ajlm-2900	128	8	node	node	NOUN
ajlm-2900	128	9	is	be	AUX
ajlm-2900	128	10	representative	representative	NOUN
ajlm-2900	128	11	of	of	ADP
ajlm-2900	128	12	the	the	DET
ajlm-2900	128	13	number	number	NOUN
ajlm-2900	128	14	of	of	ADP
ajlm-2900	128	15	isolates	isolate	NOUN
ajlm-2900	128	16	.	.	PUNCT
ajlm-2900	129	1	the	the	DET
ajlm-2900	129	2	number	number	NOUN
ajlm-2900	129	3	values	value	NOUN
ajlm-2900	129	4	between	between	ADP
ajlm-2900	129	5	adjoining	adjoining	ADJ
ajlm-2900	129	6	nodes	node	NOUN
ajlm-2900	129	7	specify	specify	VERB
ajlm-2900	129	8	the	the	DET
ajlm-2900	129	9	number	number	NOUN
ajlm-2900	129	10	of	of	ADP
ajlm-2900	129	11	allele	allele	NOUN
ajlm-2900	129	12	differences	difference	NOUN
ajlm-2900	129	13	between	between	ADP
ajlm-2900	129	14	connecting	connect	VERB
ajlm-2900	129	15	nodes	node	NOUN
ajlm-2900	129	16	(	(	PUNCT
ajlm-2900	129	17	isolates	isolate	NOUN
ajlm-2900	129	18	)	)	PUNCT
ajlm-2900	129	19	.	.	PUNCT
ajlm-2900	130	1	the	the	DET
ajlm-2900	130	2	figure	figure	NOUN
ajlm-2900	130	3	legend	legend	NOUN
ajlm-2900	130	4	lists	list	VERB
ajlm-2900	130	5	the	the	DET
ajlm-2900	130	6	year	year	NOUN
ajlm-2900	130	7	of	of	ADP
ajlm-2900	130	8	isolation	isolation	NOUN
ajlm-2900	130	9	.	.	PUNCT
ajlm-2900	131	1	some	some	DET
ajlm-2900	131	2	notable	notable	ADJ
ajlm-2900	131	3	clusters	cluster	NOUN
ajlm-2900	131	4	investigated	investigate	VERB
ajlm-2900	131	5	are	be	AUX
ajlm-2900	131	6	indicated	indicate	VERB
ajlm-2900	131	7	,	,	PUNCT
ajlm-2900	131	8	of	of	ADP
ajlm-2900	131	9	which	which	PRON
ajlm-2900	131	10	details	detail	NOUN
ajlm-2900	131	11	are	be	AUX
ajlm-2900	131	12	described	describe	VERB
ajlm-2900	131	13	in	in	ADP
ajlm-2900	131	14	table	table	NOUN
ajlm-2900	131	15	1	1	NUM
ajlm-2900	131	16	.	.	PUNCT
ajlm-2900	131	17	table	table	NOUN
ajlm-2900	131	18	1	1	NUM
ajlm-2900	131	19	:	:	PUNCT
ajlm-2900	131	20	 	 	SPACE
ajlm-2900	131	21	notable	notable	ADJ
ajlm-2900	131	22	salmonella	salmonella	NOUN
ajlm-2900	131	23	clusters	cluster	NOUN
ajlm-2900	131	24	and	and	CCONJ
ajlm-2900	131	25	outbreaks	outbreak	NOUN
ajlm-2900	131	26	investigated	investigate	VERB
ajlm-2900	131	27	in	in	ADP
ajlm-2900	131	28	south	south	PROPN
ajlm-2900	131	29	africa	africa	PROPN
ajlm-2900	131	30	,	,	PUNCT
ajlm-2900	131	31	2020–2023	2020–2023	NUM
ajlm-2900	131	32	.	.	PUNCT
ajlm-2900	132	1	antimicrobial	antimicrobial	ADJ
ajlm-2900	132	2	resistance	resistance	NOUN
ajlm-2900	132	3	determinants	determinant	NOUN
ajlm-2900	132	4	for	for	ADP
ajlm-2900	132	5	amr	amr	ADJ
ajlm-2900	132	6	determinants	determinant	NOUN
ajlm-2900	132	7	,	,	PUNCT
ajlm-2900	132	8	data	datum	NOUN
ajlm-2900	132	9	were	be	AUX
ajlm-2900	132	10	reported	report	VERB
ajlm-2900	132	11	as	as	ADP
ajlm-2900	132	12	per	per	ADP
ajlm-2900	132	13	analysis	analysis	NOUN
ajlm-2900	132	14	at	at	ADP
ajlm-2900	132	15	the	the	DET
ajlm-2900	132	16	enterobase	enterobase	PROPN
ajlm-2900	132	17	salmonella	salmonella	NOUN
ajlm-2900	132	18	database	database	NOUN
ajlm-2900	132	19	where	where	SCONJ
ajlm-2900	132	20	the	the	DET
ajlm-2900	132	21	ncbi	ncbi	PROPN
ajlm-2900	132	22	amrfinder	amrfinder	PROPN
ajlm-2900	132	23	version	version	PROPN
ajlm-2900	132	24	3.11.26	3.11.26	NUM
ajlm-2900	132	25	tool20	tool20	NOUN
ajlm-2900	132	26	is	be	AUX
ajlm-2900	132	27	used	use	VERB
ajlm-2900	132	28	to	to	PART
ajlm-2900	132	29	report	report	VERB
ajlm-2900	132	30	on	on	ADP
ajlm-2900	132	31	the	the	DET
ajlm-2900	132	32	following	follow	VERB
ajlm-2900	132	33	amr	amr	NOUN
ajlm-2900	132	34	classes	class	NOUN
ajlm-2900	132	35	:	:	PUNCT
ajlm-2900	132	36	aminoglycoside	aminoglycoside	ADJ
ajlm-2900	132	37	,	,	PUNCT
ajlm-2900	132	38	penicillin	penicillin	NOUN
ajlm-2900	132	39	,	,	PUNCT
ajlm-2900	132	40	extended	extend	VERB
ajlm-2900	132	41	-	-	PUNCT
ajlm-2900	132	42	spectrum	spectrum	NOUN
ajlm-2900	132	43	beta	beta	NOUN
ajlm-2900	132	44	-	-	PUNCT
ajlm-2900	132	45	lactamase	lactamase	NOUN
ajlm-2900	132	46	(	(	PUNCT
ajlm-2900	132	47	esbl	esbl	NOUN
ajlm-2900	132	48	)	)	PUNCT
ajlm-2900	132	49	,	,	PUNCT
ajlm-2900	132	50	carbapenemase	carbapenemase	NOUN
ajlm-2900	132	51	,	,	PUNCT
ajlm-2900	132	52	colistin	colistin	NOUN
ajlm-2900	132	53	,	,	PUNCT
ajlm-2900	132	54	fosfomycin	fosfomycin	PROPN
ajlm-2900	132	55	,	,	PUNCT
ajlm-2900	132	56	macrolide	macrolide	NOUN
ajlm-2900	132	57	,	,	PUNCT
ajlm-2900	132	58	phenicol	phenicol	NOUN
ajlm-2900	132	59	,	,	PUNCT
ajlm-2900	132	60	quinolone	quinolone	NOUN
ajlm-2900	132	61	,	,	PUNCT
ajlm-2900	132	62	sulfonamide	sulfonamide	NOUN
ajlm-2900	132	63	,	,	PUNCT
ajlm-2900	132	64	tetracycline	tetracycline	NOUN
ajlm-2900	132	65	,	,	PUNCT
ajlm-2900	132	66	and	and	CCONJ
ajlm-2900	132	67	trimethoprim	trimethoprim	NOUN
ajlm-2900	132	68	.	.	PUNCT
ajlm-2900	133	1	sixteen	sixteen	NUM
ajlm-2900	133	2	per	per	ADP
ajlm-2900	133	3	cent	cent	NOUN
ajlm-2900	133	4	(	(	PUNCT
ajlm-2900	133	5	1288/8006	1288/8006	NUM
ajlm-2900	133	6	)	)	PUNCT
ajlm-2900	133	7	of	of	ADP
ajlm-2900	133	8	isolates	isolate	NOUN
ajlm-2900	133	9	showed	show	VERB
ajlm-2900	133	10	the	the	DET
ajlm-2900	133	11	presence	presence	NOUN
ajlm-2900	133	12	of	of	ADP
ajlm-2900	133	13	amr	amr	ADJ
ajlm-2900	133	14	determinants	determinant	NOUN
ajlm-2900	133	15	associated	associate	VERB
ajlm-2900	133	16	with	with	ADP
ajlm-2900	133	17	≥	≥	NOUN
ajlm-2900	133	18	2	2	NUM
ajlm-2900	133	19	classes	class	NOUN
ajlm-2900	133	20	of	of	ADP
ajlm-2900	133	21	antimicrobials	antimicrobial	NOUN
ajlm-2900	133	22	.	.	PUNCT
ajlm-2900	134	1	among	among	ADP
ajlm-2900	134	2	our	our	PRON
ajlm-2900	134	3	top	top	NOUN
ajlm-2900	134	4	(	(	PUNCT
ajlm-2900	134	5	most	most	ADV
ajlm-2900	134	6	common	common	ADJ
ajlm-2900	134	7	)	)	PUNCT
ajlm-2900	134	8	eight	eight	NUM
ajlm-2900	134	9	serovars	serovar	NOUN
ajlm-2900	134	10	or	or	CCONJ
ajlm-2900	134	11	subspecies	subspecie	NOUN
ajlm-2900	134	12	,	,	PUNCT
ajlm-2900	134	13	salmonella	salmonella	NOUN
ajlm-2900	134	14	enteritidis	enteritidi	NOUN
ajlm-2900	134	15	showed	show	VERB
ajlm-2900	134	16	the	the	DET
ajlm-2900	134	17	lowest	low	ADJ
ajlm-2900	134	18	prevalence	prevalence	NOUN
ajlm-2900	134	19	of	of	ADP
ajlm-2900	134	20	amr	amr	NOUN
ajlm-2900	134	21	,	,	PUNCT
ajlm-2900	134	22	while	while	SCONJ
ajlm-2900	134	23	salmonella	salmonella	NOUN
ajlm-2900	134	24	isangi	isangi	NOUN
ajlm-2900	134	25	showed	show	VERB
ajlm-2900	134	26	the	the	DET
ajlm-2900	134	27	highest	high	ADJ
ajlm-2900	134	28	prevalence	prevalence	NOUN
ajlm-2900	134	29	of	of	ADP
ajlm-2900	134	30	amr	amr	PROPN
ajlm-2900	134	31	(	(	PUNCT
ajlm-2900	134	32	table	table	NOUN
ajlm-2900	134	33	2	2	NUM
ajlm-2900	134	34	)	)	PUNCT
ajlm-2900	134	35	.	.	PUNCT
ajlm-2900	135	1	most	most	ADJ
ajlm-2900	135	2	salmonella	salmonella	PROPN
ajlm-2900	135	3	isangi	isangi	NOUN
ajlm-2900	135	4	(	(	PUNCT
ajlm-2900	135	5	159/167	159/167	NUM
ajlm-2900	135	6	;	;	PUNCT
ajlm-2900	135	7	95.2	95.2	NUM
ajlm-2900	135	8	%	%	NOUN
ajlm-2900	135	9	)	)	PUNCT
ajlm-2900	135	10	showed	show	VERB
ajlm-2900	135	11	amr	amr	ADJ
ajlm-2900	135	12	determinants	determinant	NOUN
ajlm-2900	135	13	associated	associate	VERB
ajlm-2900	135	14	with	with	ADP
ajlm-2900	135	15	≥	≥	NOUN
ajlm-2900	135	16	7	7	NUM
ajlm-2900	135	17	classes	class	NOUN
ajlm-2900	135	18	of	of	ADP
ajlm-2900	135	19	antimicrobials	antimicrobial	NOUN
ajlm-2900	135	20	,	,	PUNCT
ajlm-2900	135	21	including	include	VERB
ajlm-2900	135	22	esbl	esbl	NOUN
ajlm-2900	135	23	genes	gene	NOUN
ajlm-2900	135	24	(	(	PUNCT
ajlm-2900	135	25	blaoxa-1	blaoxa-1	NOUN
ajlm-2900	135	26	,	,	PUNCT
ajlm-2900	135	27	blaoxa-10	blaoxa-10	PROPN
ajlm-2900	135	28	,	,	PUNCT
ajlm-2900	135	29	blactx	blactx	NOUN
ajlm-2900	135	30	-	-	PUNCT
ajlm-2900	135	31	m-15	m-15	PROPN
ajlm-2900	135	32	,	,	PUNCT
ajlm-2900	135	33	blatem-63	blatem-63	PROPN
ajlm-2900	135	34	,	,	PUNCT
ajlm-2900	135	35	bladha	bladha	NOUN
ajlm-2900	135	36	)	)	PUNCT
ajlm-2900	135	37	.	.	PUNCT
ajlm-2900	136	1	for	for	ADP
ajlm-2900	136	2	salmonella	salmonella	NOUN
ajlm-2900	136	3	typhimurium	typhimurium	PRON
ajlm-2900	136	4	st313	st313	PROPN
ajlm-2900	136	5	(	(	PUNCT
ajlm-2900	136	6	n	n	NOUN
ajlm-2900	136	7	=	=	SYM
ajlm-2900	136	8	269	269	NUM
ajlm-2900	136	9	)	)	PUNCT
ajlm-2900	136	10	,	,	PUNCT
ajlm-2900	136	11	only	only	ADV
ajlm-2900	136	12	37/269	37/269	NUM
ajlm-2900	136	13	(	(	PUNCT
ajlm-2900	136	14	13.8	13.8	NUM
ajlm-2900	136	15	%	%	NOUN
ajlm-2900	136	16	)	)	PUNCT
ajlm-2900	136	17	were	be	AUX
ajlm-2900	136	18	associated	associate	VERB
ajlm-2900	136	19	with	with	ADP
ajlm-2900	136	20	amr	amr	ADJ
ajlm-2900	136	21	determinants	determinant	NOUN
ajlm-2900	136	22	,	,	PUNCT
ajlm-2900	136	23	while	while	SCONJ
ajlm-2900	136	24	most	most	ADJ
ajlm-2900	136	25	(	(	PUNCT
ajlm-2900	136	26	232/269	232/269	NUM
ajlm-2900	136	27	;	;	PUNCT
ajlm-2900	136	28	86.2	86.2	NUM
ajlm-2900	136	29	%	%	NOUN
ajlm-2900	136	30	)	)	PUNCT
ajlm-2900	136	31	were	be	AUX
ajlm-2900	136	32	pan	pan	ADJ
ajlm-2900	136	33	-	-	ADJ
ajlm-2900	136	34	susceptible	susceptible	ADJ
ajlm-2900	136	35	(	(	PUNCT
ajlm-2900	136	36	figure	figure	NOUN
ajlm-2900	136	37	5	5	NUM
ajlm-2900	136	38	)	)	PUNCT
ajlm-2900	136	39	.	.	PUNCT
ajlm-2900	137	1	figure	figure	VERB
ajlm-2900	137	2	5	5	NUM
ajlm-2900	137	3	:	:	PUNCT
ajlm-2900	137	4	minimum	minimum	ADJ
ajlm-2900	137	5	spanning	span	VERB
ajlm-2900	137	6	tree	tree	NOUN
ajlm-2900	137	7	created	create	VERB
ajlm-2900	137	8	using	use	VERB
ajlm-2900	137	9	cgmlst	cgmlst	NOUN
ajlm-2900	137	10	data	datum	NOUN
ajlm-2900	137	11	for	for	ADP
ajlm-2900	137	12	salmonella	salmonella	NOUN
ajlm-2900	138	1	typhimurium	typhimurium	DET
ajlm-2900	138	2	st313	st313	PROPN
ajlm-2900	138	3	isolates	isolate	NOUN
ajlm-2900	138	4	(	(	PUNCT
ajlm-2900	138	5	n	n	NOUN
ajlm-2900	138	6	=	=	SYM
ajlm-2900	138	7	269	269	NUM
ajlm-2900	138	8	)	)	PUNCT
ajlm-2900	138	9	,	,	PUNCT
ajlm-2900	138	10	south	south	PROPN
ajlm-2900	138	11	africa	africa	PROPN
ajlm-2900	138	12	,	,	PUNCT
ajlm-2900	138	13	2020–2023	2020–2023	NUM
ajlm-2900	138	14	.	.	PUNCT
ajlm-2900	139	1	the	the	DET
ajlm-2900	139	2	circular	circular	ADJ
ajlm-2900	139	3	nodes	node	NOUN
ajlm-2900	139	4	represent	represent	VERB
ajlm-2900	139	5	isolates	isolate	NOUN
ajlm-2900	139	6	.	.	PUNCT
ajlm-2900	140	1	the	the	PRON
ajlm-2900	140	2	larger	large	ADJ
ajlm-2900	140	3	the	the	DET
ajlm-2900	140	4	circular	circular	ADJ
ajlm-2900	140	5	node	node	NOUN
ajlm-2900	140	6	,	,	PUNCT
ajlm-2900	140	7	the	the	DET
ajlm-2900	140	8	more	more	ADJ
ajlm-2900	140	9	isolates	isolate	NOUN
ajlm-2900	140	10	which	which	PRON
ajlm-2900	140	11	are	be	AUX
ajlm-2900	140	12	indicated	indicate	VERB
ajlm-2900	140	13	.	.	PUNCT
ajlm-2900	141	1	the	the	DET
ajlm-2900	141	2	number	number	NOUN
ajlm-2900	141	3	of	of	ADP
ajlm-2900	141	4	segments	segment	NOUN
ajlm-2900	141	5	within	within	ADP
ajlm-2900	141	6	a	a	DET
ajlm-2900	141	7	circular	circular	ADJ
ajlm-2900	141	8	node	node	NOUN
ajlm-2900	141	9	is	be	AUX
ajlm-2900	141	10	representative	representative	NOUN
ajlm-2900	141	11	of	of	ADP
ajlm-2900	141	12	the	the	DET
ajlm-2900	141	13	number	number	NOUN
ajlm-2900	141	14	of	of	ADP
ajlm-2900	141	15	isolates	isolate	NOUN
ajlm-2900	141	16	.	.	PUNCT
ajlm-2900	142	1	the	the	DET
ajlm-2900	142	2	number	number	NOUN
ajlm-2900	142	3	values	value	NOUN
ajlm-2900	142	4	between	between	ADP
ajlm-2900	142	5	adjoining	adjoining	ADJ
ajlm-2900	142	6	nodes	node	NOUN
ajlm-2900	142	7	specify	specify	VERB
ajlm-2900	142	8	the	the	DET
ajlm-2900	142	9	number	number	NOUN
ajlm-2900	142	10	of	of	ADP
ajlm-2900	142	11	allele	allele	NOUN
ajlm-2900	142	12	differences	difference	NOUN
ajlm-2900	142	13	between	between	ADP
ajlm-2900	142	14	connecting	connect	VERB
ajlm-2900	142	15	nodes	node	NOUN
ajlm-2900	142	16	(	(	PUNCT
ajlm-2900	142	17	isolates	isolate	NOUN
ajlm-2900	142	18	)	)	PUNCT
ajlm-2900	142	19	.	.	PUNCT
ajlm-2900	143	1	the	the	DET
ajlm-2900	143	2	legend	legend	NOUN
ajlm-2900	143	3	points	point	VERB
ajlm-2900	143	4	to	to	ADP
ajlm-2900	143	5	isolates	isolate	NOUN
ajlm-2900	143	6	with	with	ADP
ajlm-2900	143	7	or	or	CCONJ
ajlm-2900	143	8	without	without	ADP
ajlm-2900	143	9	antimicrobial	antimicrobial	ADJ
ajlm-2900	143	10	resistance	resistance	NOUN
ajlm-2900	143	11	determinants	determinant	NOUN
ajlm-2900	143	12	.	.	PUNCT
ajlm-2900	144	1	table	table	NOUN
ajlm-2900	144	2	2	2	NUM
ajlm-2900	144	3	:	:	PUNCT
ajlm-2900	144	4	 	 	SPACE
ajlm-2900	144	5	antimicrobial	antimicrobial	ADJ
ajlm-2900	144	6	resistance	resistance	NOUN
ajlm-2900	144	7	determinants	determinant	NOUN
ajlm-2900	144	8	associated	associate	VERB
ajlm-2900	144	9	with	with	ADP
ajlm-2900	144	10	the	the	DET
ajlm-2900	144	11	top	top	ADJ
ajlm-2900	144	12	(	(	PUNCT
ajlm-2900	144	13	most	most	ADV
ajlm-2900	144	14	common	common	ADJ
ajlm-2900	144	15	)	)	PUNCT
ajlm-2900	144	16	eight	eight	NUM
ajlm-2900	144	17	salmonella	salmonella	NOUN
ajlm-2900	144	18	serovars	serovar	NOUN
ajlm-2900	144	19	and	and	CCONJ
ajlm-2900	144	20	sub	sub	NOUN
ajlm-2900	144	21	-	-	NOUN
ajlm-2900	144	22	species	specie	NOUN
ajlm-2900	144	23	in	in	ADP
ajlm-2900	144	24	south	south	PROPN
ajlm-2900	144	25	africa	africa	PROPN
ajlm-2900	144	26	,	,	PUNCT
ajlm-2900	144	27	2020–2023	2020–2023	NUM
ajlm-2900	144	28	.	.	PUNCT
ajlm-2900	145	1	for	for	ADP
ajlm-2900	145	2	the	the	DET
ajlm-2900	145	3	period	period	NOUN
ajlm-2900	145	4	of	of	ADP
ajlm-2900	145	5	this	this	DET
ajlm-2900	145	6	research	research	NOUN
ajlm-2900	145	7	(	(	PUNCT
ajlm-2900	145	8	2020	2020	NUM
ajlm-2900	145	9	to	to	ADP
ajlm-2900	145	10	2023	2023	NUM
ajlm-2900	145	11	)	)	PUNCT
ajlm-2900	145	12	,	,	PUNCT
ajlm-2900	145	13	we	we	PRON
ajlm-2900	145	14	identified	identify	VERB
ajlm-2900	145	15	297	297	NUM
ajlm-2900	145	16	cases	case	NOUN
ajlm-2900	145	17	of	of	ADP
ajlm-2900	145	18	esbl	esbl	NOUN
ajlm-2900	145	19	-	-	PUNCT
ajlm-2900	145	20	positive	positive	ADJ
ajlm-2900	145	21	salmonella	salmonella	NOUN
ajlm-2900	145	22	,	,	PUNCT
ajlm-2900	145	23	which	which	PRON
ajlm-2900	145	24	showed	show	VERB
ajlm-2900	145	25	a	a	DET
ajlm-2900	145	26	variety	variety	NOUN
ajlm-2900	145	27	of	of	ADP
ajlm-2900	145	28	esbl	esbl	NOUN
ajlm-2900	145	29	genes	gene	NOUN
ajlm-2900	145	30	including	include	VERB
ajlm-2900	145	31	:	:	PUNCT
ajlm-2900	145	32	blactx	blactx	NOUN
ajlm-2900	145	33	-	-	PUNCT
ajlm-2900	145	34	m	m	PROPN
ajlm-2900	145	35	variants	variant	NOUN
ajlm-2900	145	36	,	,	PUNCT
ajlm-2900	145	37	blacmy	blacmy	NOUN
ajlm-2900	145	38	variants	variant	NOUN
ajlm-2900	145	39	,	,	PUNCT
ajlm-2900	145	40	bladha	bladha	PROPN
ajlm-2900	145	41	,	,	PUNCT
ajlm-2900	145	42	blaoxa-1	blaoxa-1	NOUN
ajlm-2900	145	43	,	,	PUNCT
ajlm-2900	145	44	blaoxa-10	blaoxa-10	PROPN
ajlm-2900	145	45	,	,	PUNCT
ajlm-2900	145	46	blatem-63	blatem-63	PROPN
ajlm-2900	145	47	,	,	PUNCT
ajlm-2900	145	48	and	and	CCONJ
ajlm-2900	145	49	blashv-2	blashv-2	NUM
ajlm-2900	145	50	.	.	PUNCT
ajlm-2900	146	1	most	most	ADJ
ajlm-2900	146	2	esbl	esbl	NOUN
ajlm-2900	146	3	-	-	PUNCT
ajlm-2900	146	4	positive	positive	ADJ
ajlm-2900	146	5	salmonella	salmonella	NOUN
ajlm-2900	146	6	(	(	PUNCT
ajlm-2900	146	7	162/297	162/297	NUM
ajlm-2900	146	8	;	;	PUNCT
ajlm-2900	146	9	54.5	54.5	NUM
ajlm-2900	146	10	%	%	NOUN
ajlm-2900	146	11	)	)	PUNCT
ajlm-2900	146	12	were	be	AUX
ajlm-2900	146	13	associated	associate	VERB
ajlm-2900	146	14	with	with	ADP
ajlm-2900	146	15	salmonella	salmonella	NOUN
ajlm-2900	146	16	isangi	isangi	PROPN
ajlm-2900	146	17	.	.	PUNCT
ajlm-2900	147	1	for	for	ADP
ajlm-2900	147	2	carbapenemase	carbapenemase	NOUN
ajlm-2900	147	3	-	-	PUNCT
ajlm-2900	147	4	positive	positive	ADJ
ajlm-2900	147	5	salmonella	salmonella	NOUN
ajlm-2900	147	6	,	,	PUNCT
ajlm-2900	147	7	we	we	PRON
ajlm-2900	147	8	identified	identify	VERB
ajlm-2900	147	9	22	22	NUM
ajlm-2900	147	10	cases	case	NOUN
ajlm-2900	147	11	,	,	PUNCT
ajlm-2900	147	12	which	which	PRON
ajlm-2900	147	13	included	include	VERB
ajlm-2900	147	14	:	:	PUNCT
ajlm-2900	147	15	eight	eight	NUM
ajlm-2900	147	16	isolates	isolate	NOUN
ajlm-2900	147	17	of	of	ADP
ajlm-2900	147	18	salmonella	salmonella	NOUN
ajlm-2900	147	19	isangi	isangi	NOUN
ajlm-2900	147	20	(	(	PUNCT
ajlm-2900	147	21	housing	housing	NOUN
ajlm-2900	147	22	either	either	CCONJ
ajlm-2900	147	23	the	the	DET
ajlm-2900	147	24	blandm-1	blandm-1	NOUN
ajlm-2900	147	25	gene	gene	NOUN
ajlm-2900	147	26	or	or	CCONJ
ajlm-2900	147	27	blaoxa-181	blaoxa-181	NOUN
ajlm-2900	147	28	gene	gene	NOUN
ajlm-2900	147	29	)	)	PUNCT
ajlm-2900	147	30	,	,	PUNCT
ajlm-2900	147	31	four	four	NUM
ajlm-2900	147	32	isolates	isolate	NOUN
ajlm-2900	147	33	of	of	ADP
ajlm-2900	147	34	salmonella	salmonella	NOUN
ajlm-2900	147	35	enteritidis	enteritidis	NOUN
ajlm-2900	147	36	(	(	PUNCT
ajlm-2900	147	37	housing	housing	NOUN
ajlm-2900	147	38	either	either	CCONJ
ajlm-2900	147	39	the	the	DET
ajlm-2900	147	40	blaoxa-48	blaoxa-48	NOUN
ajlm-2900	147	41	gene	gene	NOUN
ajlm-2900	147	42	or	or	CCONJ
ajlm-2900	147	43	blaoxa-181	blaoxa-181	NOUN
ajlm-2900	147	44	gene	gene	NOUN
ajlm-2900	147	45	)	)	PUNCT
ajlm-2900	147	46	,	,	PUNCT
ajlm-2900	147	47	four	four	NUM
ajlm-2900	147	48	isolates	isolate	NOUN
ajlm-2900	147	49	of	of	ADP
ajlm-2900	147	50	salmonella	salmonella	NOUN
ajlm-2900	147	51	typhimurium	typhimurium	NOUN
ajlm-2900	147	52	(	(	PUNCT
ajlm-2900	147	53	housing	house	VERB
ajlm-2900	147	54	the	the	DET
ajlm-2900	147	55	blaoxa-48	blaoxa-48	NOUN
ajlm-2900	147	56	gene	gene	NOUN
ajlm-2900	147	57	)	)	PUNCT
ajlm-2900	147	58	,	,	PUNCT
ajlm-2900	147	59	two	two	NUM
ajlm-2900	147	60	isolates	isolate	NOUN
ajlm-2900	147	61	of	of	ADP
ajlm-2900	147	62	salmonella	salmonella	NOUN
ajlm-2900	147	63	montevideo	montevideo	NOUN
ajlm-2900	147	64	(	(	PUNCT
ajlm-2900	147	65	housing	house	VERB
ajlm-2900	147	66	the	the	DET
ajlm-2900	147	67	blaoxa-48	blaoxa-48	NOUN
ajlm-2900	147	68	gene	gene	NOUN
ajlm-2900	147	69	)	)	PUNCT
ajlm-2900	147	70	,	,	PUNCT
ajlm-2900	147	71	one	one	NUM
ajlm-2900	147	72	isolate	isolate	NOUN
ajlm-2900	147	73	of	of	ADP
ajlm-2900	147	74	salmonella	salmonella	NOUN
ajlm-2900	147	75	gallinarum	gallinarum	ADJ
ajlm-2900	147	76	(	(	PUNCT
ajlm-2900	147	77	housing	house	VERB
ajlm-2900	147	78	the	the	DET
ajlm-2900	147	79	blaoxa-48	blaoxa-48	NOUN
ajlm-2900	147	80	gene	gene	NOUN
ajlm-2900	147	81	)	)	PUNCT
ajlm-2900	147	82	,	,	PUNCT
ajlm-2900	147	83	one	one	NUM
ajlm-2900	147	84	isolate	isolate	NOUN
ajlm-2900	147	85	of	of	ADP
ajlm-2900	147	86	salmonella	salmonella	NOUN
ajlm-2900	147	87	virchow	virchow	NOUN
ajlm-2900	147	88	(	(	PUNCT
ajlm-2900	147	89	housing	house	VERB
ajlm-2900	147	90	the	the	DET
ajlm-2900	147	91	blaoxa-48	blaoxa-48	NOUN
ajlm-2900	147	92	gene	gene	NOUN
ajlm-2900	147	93	)	)	PUNCT
ajlm-2900	147	94	,	,	PUNCT
ajlm-2900	147	95	one	one	NUM
ajlm-2900	147	96	isolate	isolate	NOUN
ajlm-2900	147	97	of	of	ADP
ajlm-2900	147	98	salmonella	salmonella	NOUN
ajlm-2900	147	99	muenster	muenster	NOUN
ajlm-2900	147	100	(	(	PUNCT
ajlm-2900	147	101	housing	house	VERB
ajlm-2900	147	102	the	the	DET
ajlm-2900	147	103	blaoxa-48	blaoxa-48	NOUN
ajlm-2900	147	104	gene	gene	NOUN
ajlm-2900	147	105	)	)	PUNCT
ajlm-2900	147	106	,	,	PUNCT
ajlm-2900	147	107	and	and	CCONJ
ajlm-2900	147	108	one	one	NUM
ajlm-2900	147	109	isolate	isolate	NOUN
ajlm-2900	147	110	of	of	ADP
ajlm-2900	147	111	s.	s.	PROPN
ajlm-2900	147	112	enterica	enterica	PROPN
ajlm-2900	147	113	subspecies	subspecies	PROPN
ajlm-2900	147	114	salamae	salamae	VERB
ajlm-2900	147	115	(	(	PUNCT
ajlm-2900	147	116	housing	housing	NOUN
ajlm-2900	147	117	the	the	DET
ajlm-2900	147	118	blaoxa-181	blaoxa-181	NOUN
ajlm-2900	147	119	gene	gene	NOUN
ajlm-2900	147	120	)	)	PUNCT
ajlm-2900	147	121	.	.	PUNCT
ajlm-2900	148	1	during	during	ADP
ajlm-2900	148	2	this	this	DET
ajlm-2900	148	3	same	same	ADJ
ajlm-2900	148	4	period	period	NOUN
ajlm-2900	148	5	of	of	ADP
ajlm-2900	148	6	research	research	NOUN
ajlm-2900	148	7	,	,	PUNCT
ajlm-2900	148	8	we	we	PRON
ajlm-2900	148	9	also	also	ADV
ajlm-2900	148	10	identified	identify	VERB
ajlm-2900	148	11	five	five	NUM
ajlm-2900	148	12	cases	case	NOUN
ajlm-2900	148	13	of	of	ADP
ajlm-2900	148	14	extensively	extensively	ADV
ajlm-2900	148	15	drug	drug	NOUN
ajlm-2900	148	16	-	-	PUNCT
ajlm-2900	148	17	resistant	resistant	ADJ
ajlm-2900	148	18	salmonella	salmonella	NOUN
ajlm-2900	148	19	typhi	typhi	VERB
ajlm-2900	148	20	,	,	PUNCT
ajlm-2900	148	21	of	of	ADP
ajlm-2900	148	22	which	which	PRON
ajlm-2900	148	23	two	two	NUM
ajlm-2900	148	24	cases	case	NOUN
ajlm-2900	148	25	had	have	AUX
ajlm-2900	148	26	confirmed	confirm	VERB
ajlm-2900	148	27	travel	travel	NOUN
ajlm-2900	148	28	history	history	NOUN
ajlm-2900	148	29	to	to	ADP
ajlm-2900	148	30	pakistan	pakistan	PROPN
ajlm-2900	148	31	.	.	PUNCT
ajlm-2900	149	1	three	three	NUM
ajlm-2900	149	2	isolates	isolate	NOUN
ajlm-2900	149	3	included	include	VERB
ajlm-2900	149	4	resistome	resistome	NOUN
ajlm-2900	149	5	:	:	PUNCT
ajlm-2900	149	6	blatem-1	blatem-1	NUM
ajlm-2900	149	7	,	,	PUNCT
ajlm-2900	149	8	blactx	blactx	NOUN
ajlm-2900	149	9	-	-	PUNCT
ajlm-2900	149	10	m-15	m-15	PROPN
ajlm-2900	149	11	,	,	PUNCT
ajlm-2900	149	12	cata1	cata1	NOUN
ajlm-2900	149	13	,	,	PUNCT
ajlm-2900	149	14	sul1	sul1	PROPN
ajlm-2900	149	15	,	,	PUNCT
ajlm-2900	149	16	sul2	sul2	PROPN
ajlm-2900	149	17	,	,	PUNCT
ajlm-2900	149	18	dfra7	dfra7	PROPN
ajlm-2900	149	19	,	,	PUNCT
ajlm-2900	149	20	qnrs1	qnrs1	PROPN
ajlm-2900	149	21	,	,	PUNCT
ajlm-2900	149	22	gyra	gyra	PROPN
ajlm-2900	149	23	s83f	s83f	PROPN
ajlm-2900	149	24	;	;	PUNCT
ajlm-2900	149	25	while	while	SCONJ
ajlm-2900	149	26	two	two	NUM
ajlm-2900	149	27	isolates	isolate	NOUN
ajlm-2900	149	28	included	include	VERB
ajlm-2900	149	29	resistome	resistome	NOUN
ajlm-2900	149	30	:	:	PUNCT
ajlm-2900	149	31	blatem-1	blatem-1	NUM
ajlm-2900	149	32	,	,	PUNCT
ajlm-2900	149	33	blactx	blactx	NOUN
ajlm-2900	149	34	-	-	PUNCT
ajlm-2900	149	35	m-15	m-15	PROPN
ajlm-2900	149	36	,	,	PUNCT
ajlm-2900	149	37	cata1	cata1	NOUN
ajlm-2900	149	38	,	,	PUNCT
ajlm-2900	149	39	sul1	sul1	PROPN
ajlm-2900	149	40	,	,	PUNCT
ajlm-2900	149	41	dfra7	dfra7	PROPN
ajlm-2900	149	42	,	,	PUNCT
ajlm-2900	149	43	qnrs1	qnrs1	PROPN
ajlm-2900	149	44	,	,	PUNCT
ajlm-2900	149	45	gyra	gyra	PROPN
ajlm-2900	149	46	s83f	s83f	PROPN
ajlm-2900	149	47	.	.	PUNCT
ajlm-2900	150	1	discussion	discussion	NOUN
ajlm-2900	150	2	the	the	DET
ajlm-2900	150	3	ced	ced	PROPN
ajlm-2900	150	4	,	,	PUNCT
ajlm-2900	150	5	nicd	nicd	PROPN
ajlm-2900	150	6	,	,	PUNCT
ajlm-2900	150	7	is	be	AUX
ajlm-2900	150	8	a	a	DET
ajlm-2900	150	9	member	member	NOUN
ajlm-2900	150	10	of	of	ADP
ajlm-2900	150	11	the	the	DET
ajlm-2900	150	12	regional	regional	PROPN
ajlm-2900	150	13	pulsenet	pulsenet	PROPN
ajlm-2900	150	14	africa	africa	PROPN
ajlm-2900	150	15	laboratory	laboratory	PROPN
ajlm-2900	150	16	network	network	NOUN
ajlm-2900	150	17	(	(	PUNCT
ajlm-2900	150	18	https://www.pulsenetafrica.org/	https://www.pulsenetafrica.org/	NOUN
ajlm-2900	150	19	)	)	PUNCT
ajlm-2900	150	20	,	,	PUNCT
ajlm-2900	150	21	which	which	PRON
ajlm-2900	150	22	forms	form	VERB
ajlm-2900	150	23	part	part	NOUN
ajlm-2900	150	24	of	of	ADP
ajlm-2900	150	25	the	the	DET
ajlm-2900	150	26	pulsenet	pulsenet	ADJ
ajlm-2900	150	27	international	international	ADJ
ajlm-2900	150	28	network	network	NOUN
ajlm-2900	150	29	(	(	PUNCT
ajlm-2900	150	30	http://www.pulsenetinternational.org/	http://www.pulsenetinternational.org/	ADV
ajlm-2900	150	31	)	)	PUNCT
ajlm-2900	150	32	,	,	PUNCT
ajlm-2900	150	33	a	a	DET
ajlm-2900	150	34	global	global	ADJ
ajlm-2900	150	35	molecular	molecular	ADJ
ajlm-2900	150	36	subtyping	subtype	VERB
ajlm-2900	150	37	network	network	NOUN
ajlm-2900	150	38	for	for	ADP
ajlm-2900	150	39	foodborne	foodborne	ADJ
ajlm-2900	150	40	disease	disease	NOUN
ajlm-2900	150	41	surveillance	surveillance	NOUN
ajlm-2900	150	42	.	.	PUNCT
ajlm-2900	151	1	the	the	DET
ajlm-2900	151	2	ced	ced	PROPN
ajlm-2900	151	3	has	have	AUX
ajlm-2900	151	4	always	always	ADV
ajlm-2900	151	5	followed	follow	VERB
ajlm-2900	151	6	standardised	standardise	VERB
ajlm-2900	151	7	molecular	molecular	ADJ
ajlm-2900	151	8	subtyping	subtyping	NOUN
ajlm-2900	151	9	methodologies	methodology	NOUN
ajlm-2900	151	10	as	as	SCONJ
ajlm-2900	151	11	suggested	suggest	VERB
ajlm-2900	151	12	by	by	ADP
ajlm-2900	151	13	pulsenet	pulsenet	NOUN
ajlm-2900	151	14	international	international	PROPN
ajlm-2900	151	15	,	,	PUNCT
ajlm-2900	151	16	of	of	ADP
ajlm-2900	151	17	which	which	PRON
ajlm-2900	151	18	in	in	ADP
ajlm-2900	151	19	years	year	NOUN
ajlm-2900	151	20	gone	go	VERB
ajlm-2900	151	21	by	by	ADV
ajlm-2900	151	22	,	,	PUNCT
ajlm-2900	151	23	the	the	DET
ajlm-2900	151	24	suggested	suggest	VERB
ajlm-2900	151	25	primary	primary	ADJ
ajlm-2900	151	26	methodology	methodology	NOUN
ajlm-2900	151	27	was	be	AUX
ajlm-2900	151	28	pulsed	pulse	VERB
ajlm-2900	151	29	-	-	PUNCT
ajlm-2900	151	30	field	field	NOUN
ajlm-2900	151	31	gel	gel	NOUN
ajlm-2900	151	32	electrophoresis	electrophoresis	NOUN
ajlm-2900	151	33	analysis	analysis	NOUN
ajlm-2900	151	34	.	.	PUNCT
ajlm-2900	152	1	the	the	DET
ajlm-2900	152	2	ced	ced	PROPN
ajlm-2900	152	3	has	have	AUX
ajlm-2900	152	4	published	publish	VERB
ajlm-2900	152	5	extensively	extensively	ADV
ajlm-2900	152	6	on	on	ADP
ajlm-2900	152	7	the	the	DET
ajlm-2900	152	8	use	use	NOUN
ajlm-2900	152	9	of	of	ADP
ajlm-2900	152	10	these	these	DET
ajlm-2900	152	11	older	old	ADJ
ajlm-2900	152	12	(	(	PUNCT
ajlm-2900	152	13	traditional	traditional	ADJ
ajlm-2900	152	14	)	)	PUNCT
ajlm-2900	152	15	molecular	molecular	ADJ
ajlm-2900	152	16	subtyping	subtyping	NOUN
ajlm-2900	152	17	methodologies	methodology	NOUN
ajlm-2900	152	18	for	for	ADP
ajlm-2900	152	19	routine	routine	ADJ
ajlm-2900	152	20	surveillance	surveillance	NOUN
ajlm-2900	152	21	activities	activity	NOUN
ajlm-2900	152	22	and	and	CCONJ
ajlm-2900	152	23	for	for	ADP
ajlm-2900	152	24	investigation	investigation	NOUN
ajlm-2900	152	25	of	of	ADP
ajlm-2900	152	26	outbreaks	outbreak	NOUN
ajlm-2900	152	27	involving	involve	VERB
ajlm-2900	152	28	enteric	enteric	ADJ
ajlm-2900	152	29	bacterial	bacterial	ADJ
ajlm-2900	152	30	pathogens	pathogen	NOUN
ajlm-2900	152	31	,	,	PUNCT
ajlm-2900	152	32	which	which	PRON
ajlm-2900	152	33	have	have	AUX
ajlm-2900	152	34	included	include	VERB
ajlm-2900	152	35	the	the	DET
ajlm-2900	152	36	use	use	NOUN
ajlm-2900	152	37	of	of	ADP
ajlm-2900	152	38	pulsed	pulse	VERB
ajlm-2900	152	39	-	-	PUNCT
ajlm-2900	152	40	field	field	NOUN
ajlm-2900	152	41	gel	gel	NOUN
ajlm-2900	152	42	electrophoresis	electrophoresis	NOUN
ajlm-2900	152	43	analysis,15,22	analysis,15,22	VERB
ajlm-2900	152	44	multiple	multiple	ADJ
ajlm-2900	152	45	-	-	PUNCT
ajlm-2900	152	46	locus	locus	ADJ
ajlm-2900	152	47	variable	variable	ADJ
ajlm-2900	152	48	-	-	PUNCT
ajlm-2900	152	49	number	number	NOUN
ajlm-2900	152	50	tandem	tandem	NOUN
ajlm-2900	152	51	-	-	PUNCT
ajlm-2900	152	52	repeats	repeat	NOUN
ajlm-2900	152	53	analysis,14,16	analysis,14,16	NOUN
ajlm-2900	152	54	and	and	CCONJ
ajlm-2900	152	55	mlst	mlst	NOUN
ajlm-2900	152	56	(	(	PUNCT
ajlm-2900	152	57	using	use	VERB
ajlm-2900	152	58	sanger	sanger	PROPN
ajlm-2900	152	59	sequencing	sequencing	NOUN
ajlm-2900	152	60	of	of	ADP
ajlm-2900	152	61	polymerase	polymerase	NOUN
ajlm-2900	152	62	chain	chain	NOUN
ajlm-2900	152	63	reaction	reaction	NOUN
ajlm-2900	152	64	-	-	PUNCT
ajlm-2900	152	65	amplified	amplify	VERB
ajlm-2900	152	66	genes).13,14	genes).13,14	NOUN
ajlm-2900	152	67	in	in	ADP
ajlm-2900	152	68	late	late	ADJ
ajlm-2900	152	69	2015	2015	NUM
ajlm-2900	152	70	,	,	PUNCT
ajlm-2900	152	71	ced	ced	PROPN
ajlm-2900	152	72	took	take	VERB
ajlm-2900	152	73	the	the	DET
ajlm-2900	152	74	first	first	ADJ
ajlm-2900	152	75	step	step	NOUN
ajlm-2900	152	76	towards	towards	ADP
ajlm-2900	152	77	the	the	DET
ajlm-2900	152	78	use	use	NOUN
ajlm-2900	152	79	of	of	ADP
ajlm-2900	152	80	wgs	wgs	NOUN
ajlm-2900	152	81	for	for	ADP
ajlm-2900	152	82	analysis	analysis	NOUN
ajlm-2900	152	83	of	of	ADP
ajlm-2900	152	84	enteric	enteric	ADJ
ajlm-2900	152	85	pathogens	pathogen	NOUN
ajlm-2900	152	86	.	.	PUNCT
ajlm-2900	153	1	this	this	PRON
ajlm-2900	153	2	coincided	coincide	VERB
ajlm-2900	153	3	with	with	ADP
ajlm-2900	153	4	the	the	DET
ajlm-2900	153	5	establishment	establishment	NOUN
ajlm-2900	153	6	of	of	ADP
ajlm-2900	153	7	the	the	DET
ajlm-2900	153	8	nicd	nicd	PROPN
ajlm-2900	153	9	scf	scf	PROPN
ajlm-2900	153	10	facility	facility	NOUN
ajlm-2900	153	11	equipped	equip	VERB
ajlm-2900	153	12	with	with	ADP
ajlm-2900	153	13	illumina	illumina	PROPN
ajlm-2900	153	14	miseq	miseq	PROPN
ajlm-2900	153	15	next	next	ADJ
ajlm-2900	153	16	-	-	PUNCT
ajlm-2900	153	17	generation	generation	NOUN
ajlm-2900	153	18	sequencing	sequence	VERB
ajlm-2900	153	19	equipment	equipment	NOUN
ajlm-2900	153	20	.	.	PUNCT
ajlm-2900	154	1	our	our	PRON
ajlm-2900	154	2	first	first	ADJ
ajlm-2900	154	3	wgs	wgs	NOUN
ajlm-2900	154	4	activities	activity	NOUN
ajlm-2900	154	5	investigated	investigate	VERB
ajlm-2900	154	6	a	a	DET
ajlm-2900	154	7	cluster	cluster	NOUN
ajlm-2900	154	8	of	of	ADP
ajlm-2900	154	9	listeria	listeria	NOUN
ajlm-2900	154	10	monocytogenes	monocytogene	NOUN
ajlm-2900	154	11	cases	case	NOUN
ajlm-2900	154	12	reported	report	VERB
ajlm-2900	154	13	from	from	ADP
ajlm-2900	154	14	the	the	DET
ajlm-2900	154	15	western	western	ADJ
ajlm-2900	154	16	cape	cape	NOUN
ajlm-2900	154	17	province	province	NOUN
ajlm-2900	154	18	,	,	PUNCT
ajlm-2900	154	19	south	south	PROPN
ajlm-2900	154	20	africa	africa	PROPN
ajlm-2900	154	21	,	,	PUNCT
ajlm-2900	154	22	2015	2015	NUM
ajlm-2900	154	23	.	.	PUNCT
ajlm-2900	155	1	this	this	DET
ajlm-2900	155	2	analysis	analysis	NOUN
ajlm-2900	155	3	was	be	AUX
ajlm-2900	155	4	timely	timely	ADJ
ajlm-2900	155	5	,	,	PUNCT
ajlm-2900	155	6	as	as	SCONJ
ajlm-2900	155	7	the	the	DET
ajlm-2900	155	8	steering	steering	NOUN
ajlm-2900	155	9	committee	committee	NOUN
ajlm-2900	155	10	of	of	ADP
ajlm-2900	155	11	the	the	DET
ajlm-2900	155	12	pulsenet	pulsenet	PROPN
ajlm-2900	155	13	international	international	ADJ
ajlm-2900	155	14	network	network	NOUN
ajlm-2900	155	15	was	be	AUX
ajlm-2900	155	16	in	in	ADP
ajlm-2900	155	17	discussions	discussion	NOUN
ajlm-2900	155	18	to	to	PART
ajlm-2900	155	19	start	start	VERB
ajlm-2900	155	20	with	with	ADP
ajlm-2900	155	21	implementation	implementation	NOUN
ajlm-2900	155	22	of	of	ADP
ajlm-2900	155	23	wgs	wgs	NOUN
ajlm-2900	155	24	,	,	PUNCT
ajlm-2900	155	25	of	of	ADP
ajlm-2900	155	26	which	which	PRON
ajlm-2900	155	27	the	the	DET
ajlm-2900	155	28	vision	vision	NOUN
ajlm-2900	155	29	of	of	ADP
ajlm-2900	155	30	the	the	DET
ajlm-2900	155	31	network	network	NOUN
ajlm-2900	155	32	for	for	ADP
ajlm-2900	155	33	implementation	implementation	NOUN
ajlm-2900	155	34	of	of	ADP
ajlm-2900	155	35	wgs	wgs	NOUN
ajlm-2900	155	36	was	be	AUX
ajlm-2900	155	37	later	later	ADV
ajlm-2900	155	38	published	publish	VERB
ajlm-2900	155	39	in	in	ADP
ajlm-2900	155	40	2017.23	2017.23	NUM
ajlm-2900	155	41	in	in	ADP
ajlm-2900	155	42	2020	2020	NUM
ajlm-2900	155	43	,	,	PUNCT
ajlm-2900	155	44	ced	ce	VERB
ajlm-2900	155	45	terminated	terminate	VERB
ajlm-2900	155	46	the	the	DET
ajlm-2900	155	47	use	use	NOUN
ajlm-2900	155	48	of	of	ADP
ajlm-2900	155	49	all	all	DET
ajlm-2900	155	50	older	old	ADJ
ajlm-2900	155	51	(	(	PUNCT
ajlm-2900	155	52	traditional	traditional	ADJ
ajlm-2900	155	53	)	)	PUNCT
ajlm-2900	155	54	molecular	molecular	ADJ
ajlm-2900	155	55	subtyping	subtyping	NOUN
ajlm-2900	155	56	methodologies	methodology	NOUN
ajlm-2900	155	57	(	(	PUNCT
ajlm-2900	155	58	pulsed	pulse	VERB
ajlm-2900	155	59	-	-	PUNCT
ajlm-2900	155	60	field	field	NOUN
ajlm-2900	155	61	gel	gel	NOUN
ajlm-2900	155	62	electrophoresis	electrophoresis	NOUN
ajlm-2900	155	63	and	and	CCONJ
ajlm-2900	155	64	multiple	multiple	ADJ
ajlm-2900	155	65	-	-	PUNCT
ajlm-2900	155	66	locus	locus	ADJ
ajlm-2900	155	67	variable	variable	ADJ
ajlm-2900	155	68	-	-	PUNCT
ajlm-2900	155	69	number	number	NOUN
ajlm-2900	155	70	tandem	tandem	NOUN
ajlm-2900	155	71	-	-	PUNCT
ajlm-2900	155	72	repeats	repeat	NOUN
ajlm-2900	155	73	analysis	analysis	NOUN
ajlm-2900	155	74	)	)	PUNCT
ajlm-2900	155	75	,	,	PUNCT
ajlm-2900	155	76	and	and	CCONJ
ajlm-2900	155	77	implemented	implement	VERB
ajlm-2900	155	78	the	the	DET
ajlm-2900	155	79	use	use	NOUN
ajlm-2900	155	80	of	of	ADP
ajlm-2900	155	81	wgs	wgs	NOUN
ajlm-2900	155	82	analysis	analysis	NOUN
ajlm-2900	155	83	for	for	ADP
ajlm-2900	155	84	routine	routine	ADJ
ajlm-2900	155	85	surveillance	surveillance	NOUN
ajlm-2900	155	86	and	and	CCONJ
ajlm-2900	155	87	analysis	analysis	NOUN
ajlm-2900	155	88	of	of	ADP
ajlm-2900	155	89	all	all	DET
ajlm-2900	155	90	clinical	clinical	ADJ
ajlm-2900	155	91	isolates	isolate	NOUN
ajlm-2900	155	92	of	of	ADP
ajlm-2900	155	93	enteric	enteric	ADJ
ajlm-2900	155	94	bacterial	bacterial	ADJ
ajlm-2900	155	95	pathogens	pathogen	NOUN
ajlm-2900	155	96	,	,	PUNCT
ajlm-2900	155	97	including	include	VERB
ajlm-2900	155	98	the	the	DET
ajlm-2900	155	99	salmonella	salmonella	NOUN
ajlm-2900	155	100	.	.	PUNCT
ajlm-2900	156	1	this	this	PRON
ajlm-2900	156	2	was	be	AUX
ajlm-2900	156	3	needed	need	VERB
ajlm-2900	156	4	in	in	ADP
ajlm-2900	156	5	order	order	NOUN
ajlm-2900	156	6	to	to	PART
ajlm-2900	156	7	align	align	VERB
ajlm-2900	156	8	with	with	ADP
ajlm-2900	156	9	trends	trend	NOUN
ajlm-2900	156	10	in	in	ADP
ajlm-2900	156	11	public	public	ADJ
ajlm-2900	156	12	health	health	NOUN
ajlm-2900	156	13	microbiology	microbiology	NOUN
ajlm-2900	156	14	showing	show	VERB
ajlm-2900	156	15	the	the	DET
ajlm-2900	156	16	evolution	evolution	NOUN
ajlm-2900	156	17	towards	towards	ADP
ajlm-2900	156	18	wgs	wgs	NOUN
ajlm-2900	156	19	as	as	ADP
ajlm-2900	156	20	the	the	DET
ajlm-2900	156	21	primary	primary	ADJ
ajlm-2900	156	22	methodology	methodology	NOUN
ajlm-2900	156	23	for	for	ADP
ajlm-2900	156	24	laboratory	laboratory	NOUN
ajlm-2900	156	25	investigation	investigation	NOUN
ajlm-2900	156	26	of	of	ADP
ajlm-2900	156	27	infectious	infectious	ADJ
ajlm-2900	156	28	disease	disease	NOUN
ajlm-2900	156	29	.	.	PUNCT
ajlm-2900	157	1	globally	globally	ADV
ajlm-2900	157	2	,	,	PUNCT
ajlm-2900	157	3	many	many	ADJ
ajlm-2900	157	4	public	public	ADJ
ajlm-2900	157	5	health	health	NOUN
ajlm-2900	157	6	institutions	institution	NOUN
ajlm-2900	157	7	and	and	CCONJ
ajlm-2900	157	8	reference	reference	NOUN
ajlm-2900	157	9	laboratories	laboratory	NOUN
ajlm-2900	157	10	have	have	AUX
ajlm-2900	157	11	transitioned	transition	VERB
ajlm-2900	157	12	to	to	PART
ajlm-2900	157	13	wgs	wgs	VERB
ajlm-2900	157	14	as	as	ADP
ajlm-2900	157	15	their	their	PRON
ajlm-2900	157	16	primary	primary	ADJ
ajlm-2900	157	17	methodology	methodology	NOUN
ajlm-2900	157	18	for	for	ADP
ajlm-2900	157	19	characterisation	characterisation	NOUN
ajlm-2900	157	20	of	of	ADP
ajlm-2900	157	21	bacterial	bacterial	ADJ
ajlm-2900	157	22	pathogens.5,6,7	pathogens.5,6,7	NOUN
ajlm-2900	157	23	we	we	PRON
ajlm-2900	157	24	experienced	experience	VERB
ajlm-2900	157	25	very	very	ADV
ajlm-2900	157	26	few	few	ADJ
ajlm-2900	157	27	challenges	challenge	NOUN
ajlm-2900	157	28	with	with	ADP
ajlm-2900	157	29	our	our	PRON
ajlm-2900	157	30	implementation	implementation	NOUN
ajlm-2900	157	31	of	of	ADP
ajlm-2900	157	32	wgs	wgs	NOUN
ajlm-2900	157	33	.	.	PUNCT
ajlm-2900	158	1	the	the	DET
ajlm-2900	158	2	reasons	reason	NOUN
ajlm-2900	158	3	probably	probably	ADV
ajlm-2900	158	4	have	have	AUX
ajlm-2900	158	5	been	be	AUX
ajlm-2900	158	6	that	that	SCONJ
ajlm-2900	158	7	we	we	PRON
ajlm-2900	158	8	implemented	implement	VERB
ajlm-2900	158	9	well	well	ADV
ajlm-2900	158	10	-	-	PUNCT
ajlm-2900	158	11	established	establish	VERB
ajlm-2900	158	12	and	and	CCONJ
ajlm-2900	158	13	well	well	ADV
ajlm-2900	158	14	-	-	PUNCT
ajlm-2900	158	15	validated	validate	VERB
ajlm-2900	158	16	methodologies	methodology	NOUN
ajlm-2900	158	17	,	,	PUNCT
ajlm-2900	158	18	and	and	CCONJ
ajlm-2900	158	19	we	we	PRON
ajlm-2900	158	20	were	be	AUX
ajlm-2900	158	21	supported	support	VERB
ajlm-2900	158	22	by	by	ADP
ajlm-2900	158	23	a	a	DET
ajlm-2900	158	24	well	well	ADV
ajlm-2900	158	25	-	-	PUNCT
ajlm-2900	158	26	established	establish	VERB
ajlm-2900	158	27	and	and	CCONJ
ajlm-2900	158	28	well	well	ADV
ajlm-2900	158	29	-	-	PUNCT
ajlm-2900	158	30	equipped	equip	VERB
ajlm-2900	158	31	scf	scf	NOUN
ajlm-2900	158	32	with	with	ADP
ajlm-2900	158	33	dedicated	dedicated	ADJ
ajlm-2900	158	34	core	core	NOUN
ajlm-2900	158	35	staff	staff	NOUN
ajlm-2900	158	36	,	,	PUNCT
ajlm-2900	158	37	including	include	VERB
ajlm-2900	158	38	bioinformatics	bioinformatics	NOUN
ajlm-2900	158	39	support	support	NOUN
ajlm-2900	158	40	.	.	PUNCT
ajlm-2900	159	1	whole	whole	ADJ
ajlm-2900	159	2	-	-	PUNCT
ajlm-2900	159	3	genome	genome	NOUN
ajlm-2900	159	4	sequencing	sequencing	NOUN
ajlm-2900	159	5	all	all	PRON
ajlm-2900	159	6	starts	start	VERB
ajlm-2900	159	7	with	with	ADP
ajlm-2900	159	8	a	a	DET
ajlm-2900	159	9	good	good	ADJ
ajlm-2900	159	10	quality	quality	NOUN
ajlm-2900	159	11	dna	dna	NOUN
ajlm-2900	159	12	extraction	extraction	NOUN
ajlm-2900	159	13	from	from	ADP
ajlm-2900	159	14	bacteria	bacteria	NOUN
ajlm-2900	159	15	.	.	PUNCT
ajlm-2900	160	1	we	we	PRON
ajlm-2900	160	2	used	use	VERB
ajlm-2900	160	3	good	good	ADJ
ajlm-2900	160	4	quality	quality	NOUN
ajlm-2900	160	5	dna	dna	PROPN
ajlm-2900	160	6	extraction	extraction	NOUN
ajlm-2900	160	7	kits	kit	NOUN
ajlm-2900	160	8	to	to	PART
ajlm-2900	160	9	produce	produce	VERB
ajlm-2900	160	10	quality	quality	NOUN
ajlm-2900	160	11	in	in	ADP
ajlm-2900	160	12	our	our	PRON
ajlm-2900	160	13	dna	dna	PROPN
ajlm-2900	160	14	extractions	extraction	NOUN
ajlm-2900	160	15	.	.	PUNCT
ajlm-2900	161	1	this	this	PRON
ajlm-2900	161	2	then	then	ADV
ajlm-2900	161	3	eliminated	eliminate	VERB
ajlm-2900	161	4	almost	almost	ADV
ajlm-2900	161	5	all	all	PRON
ajlm-2900	161	6	further	further	ADJ
ajlm-2900	161	7	problems	problem	NOUN
ajlm-2900	161	8	in	in	ADP
ajlm-2900	161	9	downstream	downstream	ADJ
ajlm-2900	161	10	sequencing	sequencing	NOUN
ajlm-2900	161	11	steps	step	NOUN
ajlm-2900	161	12	,	,	PUNCT
ajlm-2900	161	13	including	include	VERB
ajlm-2900	161	14	library	library	ADJ
ajlm-2900	161	15	preparation	preparation	NOUN
ajlm-2900	161	16	.	.	PUNCT
ajlm-2900	162	1	the	the	DET
ajlm-2900	162	2	quality	quality	NOUN
ajlm-2900	162	3	of	of	ADP
ajlm-2900	162	4	our	our	PRON
ajlm-2900	162	5	sequence	sequence	NOUN
ajlm-2900	162	6	data	datum	NOUN
ajlm-2900	162	7	outputs	output	NOUN
ajlm-2900	162	8	were	be	AUX
ajlm-2900	162	9	mostly	mostly	ADV
ajlm-2900	162	10	excellent	excellent	ADJ
ajlm-2900	162	11	.	.	PUNCT
ajlm-2900	163	1	on	on	ADP
ajlm-2900	163	2	rare	rare	ADJ
ajlm-2900	163	3	occasions	occasion	NOUN
ajlm-2900	163	4	,	,	PUNCT
ajlm-2900	163	5	we	we	PRON
ajlm-2900	163	6	would	would	AUX
ajlm-2900	163	7	encounter	encounter	VERB
ajlm-2900	163	8	assembled	assemble	VERB
ajlm-2900	163	9	data	datum	NOUN
ajlm-2900	163	10	which	which	PRON
ajlm-2900	163	11	failed	fail	VERB
ajlm-2900	163	12	minimum	minimum	ADJ
ajlm-2900	163	13	quality	quality	NOUN
ajlm-2900	163	14	thresholds	threshold	NOUN
ajlm-2900	163	15	.	.	PUNCT
ajlm-2900	164	1	the	the	DET
ajlm-2900	164	2	quality	quality	NOUN
ajlm-2900	164	3	metrics	metric	NOUN
ajlm-2900	164	4	for	for	ADP
ajlm-2900	164	5	our	our	PRON
ajlm-2900	164	6	assembled	assemble	VERB
ajlm-2900	164	7	data	datum	NOUN
ajlm-2900	164	8	include	include	VERB
ajlm-2900	164	9	an	an	DET
ajlm-2900	164	10	n50	n50	NOUN
ajlm-2900	164	11	value	value	NOUN
ajlm-2900	164	12	that	that	PRON
ajlm-2900	164	13	must	must	AUX
ajlm-2900	164	14	be	be	AUX
ajlm-2900	164	15	>	>	X
ajlm-2900	164	16	20	20	NUM
ajlm-2900	164	17	kb	kb	NOUN
ajlm-2900	164	18	and	and	CCONJ
ajlm-2900	164	19	number	number	NOUN
ajlm-2900	164	20	of	of	ADP
ajlm-2900	164	21	contigs	contig	NOUN
ajlm-2900	164	22	that	that	PRON
ajlm-2900	164	23	must	must	AUX
ajlm-2900	164	24	be	be	AUX
ajlm-2900	164	25	<	<	X
ajlm-2900	164	26	300	300	NUM
ajlm-2900	164	27	.	.	PUNCT
ajlm-2900	165	1	for	for	ADP
ajlm-2900	165	2	assembled	assemble	VERB
ajlm-2900	165	3	data	datum	NOUN
ajlm-2900	165	4	that	that	PRON
ajlm-2900	165	5	fail	fail	VERB
ajlm-2900	165	6	quality	quality	NOUN
ajlm-2900	165	7	checks	check	NOUN
ajlm-2900	165	8	,	,	PUNCT
ajlm-2900	165	9	the	the	DET
ajlm-2900	165	10	sample	sample	NOUN
ajlm-2900	165	11	is	be	AUX
ajlm-2900	165	12	subjected	subject	VERB
ajlm-2900	165	13	to	to	ADP
ajlm-2900	165	14	a	a	DET
ajlm-2900	165	15	repeated	repeat	VERB
ajlm-2900	165	16	round	round	NOUN
ajlm-2900	165	17	of	of	ADP
ajlm-2900	165	18	sequence	sequence	NOUN
ajlm-2900	165	19	analysis	analysis	NOUN
ajlm-2900	165	20	,	,	PUNCT
ajlm-2900	165	21	and	and	CCONJ
ajlm-2900	165	22	this	this	PRON
ajlm-2900	165	23	usually	usually	ADV
ajlm-2900	165	24	corrects	correct	VERB
ajlm-2900	165	25	the	the	DET
ajlm-2900	165	26	quality	quality	NOUN
ajlm-2900	165	27	issue	issue	NOUN
ajlm-2900	165	28	.	.	PUNCT
ajlm-2900	166	1	we	we	PRON
ajlm-2900	166	2	rarely	rarely	ADV
ajlm-2900	166	3	encountered	encounter	VERB
ajlm-2900	166	4	contamination	contamination	NOUN
ajlm-2900	166	5	problems	problem	NOUN
ajlm-2900	166	6	in	in	ADP
ajlm-2900	166	7	our	our	PRON
ajlm-2900	166	8	analysis	analysis	NOUN
ajlm-2900	166	9	of	of	ADP
ajlm-2900	166	10	sequence	sequence	NOUN
ajlm-2900	166	11	data	datum	NOUN
ajlm-2900	166	12	.	.	PUNCT
ajlm-2900	167	1	if	if	SCONJ
ajlm-2900	167	2	contamination	contamination	NOUN
ajlm-2900	167	3	was	be	AUX
ajlm-2900	167	4	encountered	encounter	VERB
ajlm-2900	167	5	,	,	PUNCT
ajlm-2900	167	6	then	then	ADV
ajlm-2900	167	7	a	a	DET
ajlm-2900	167	8	repeat	repeat	NOUN
ajlm-2900	167	9	dna	dna	NOUN
ajlm-2900	167	10	extraction	extraction	NOUN
ajlm-2900	167	11	on	on	ADP
ajlm-2900	167	12	a	a	DET
ajlm-2900	167	13	new	new	ADJ
ajlm-2900	167	14	pure	pure	ADJ
ajlm-2900	167	15	culture	culture	NOUN
ajlm-2900	167	16	and	and	CCONJ
ajlm-2900	167	17	a	a	DET
ajlm-2900	167	18	new	new	ADJ
ajlm-2900	167	19	sequence	sequence	NOUN
ajlm-2900	167	20	analysis	analysis	NOUN
ajlm-2900	167	21	solved	solve	VERB
ajlm-2900	167	22	the	the	DET
ajlm-2900	167	23	problem	problem	NOUN
ajlm-2900	167	24	.	.	PUNCT
ajlm-2900	168	1	on	on	ADP
ajlm-2900	168	2	rare	rare	ADJ
ajlm-2900	168	3	occasions	occasion	NOUN
ajlm-2900	168	4	,	,	PUNCT
ajlm-2900	168	5	species	species	NOUN
ajlm-2900	168	6	identification	identification	NOUN
ajlm-2900	168	7	tools	tool	NOUN
ajlm-2900	168	8	would	would	AUX
ajlm-2900	168	9	100	100	NUM
ajlm-2900	168	10	%	%	NOUN
ajlm-2900	168	11	identify	identify	VERB
ajlm-2900	168	12	sequence	sequence	NOUN
ajlm-2900	168	13	data	datum	NOUN
ajlm-2900	168	14	as	as	ADP
ajlm-2900	168	15	a	a	DET
ajlm-2900	168	16	non	non	ADJ
ajlm-2900	168	17	-	-	ADJ
ajlm-2900	168	18	salmonella	salmonella	ADJ
ajlm-2900	168	19	species	specie	NOUN
ajlm-2900	168	20	,	,	PUNCT
ajlm-2900	168	21	and	and	CCONJ
ajlm-2900	168	22	in	in	ADP
ajlm-2900	168	23	these	these	DET
ajlm-2900	168	24	situations	situation	NOUN
ajlm-2900	168	25	,	,	PUNCT
ajlm-2900	168	26	presumptive	presumptive	ADJ
ajlm-2900	168	27	laboratory	laboratory	NOUN
ajlm-2900	168	28	identifications	identification	NOUN
ajlm-2900	168	29	would	would	AUX
ajlm-2900	168	30	be	be	AUX
ajlm-2900	168	31	updated	update	VERB
ajlm-2900	168	32	to	to	PART
ajlm-2900	168	33	reflect	reflect	VERB
ajlm-2900	168	34	the	the	DET
ajlm-2900	168	35	wgs	wgs	NOUN
ajlm-2900	168	36	identification	identification	NOUN
ajlm-2900	168	37	.	.	PUNCT
ajlm-2900	169	1	importantly	importantly	ADV
ajlm-2900	169	2	,	,	PUNCT
ajlm-2900	169	3	the	the	DET
ajlm-2900	169	4	implementation	implementation	NOUN
ajlm-2900	169	5	of	of	ADP
ajlm-2900	169	6	any	any	DET
ajlm-2900	169	7	new	new	ADJ
ajlm-2900	169	8	laboratory	laboratory	NOUN
ajlm-2900	169	9	testing	testing	NOUN
ajlm-2900	169	10	methodology	methodology	NOUN
ajlm-2900	169	11	must	must	AUX
ajlm-2900	169	12	be	be	AUX
ajlm-2900	169	13	accompanied	accompany	VERB
ajlm-2900	169	14	by	by	ADP
ajlm-2900	169	15	validation	validation	NOUN
ajlm-2900	169	16	data	datum	NOUN
ajlm-2900	169	17	and	and	CCONJ
ajlm-2900	169	18	other	other	ADJ
ajlm-2900	169	19	checks	check	NOUN
ajlm-2900	169	20	associated	associate	VERB
ajlm-2900	169	21	with	with	ADP
ajlm-2900	169	22	good	good	ADJ
ajlm-2900	169	23	laboratory	laboratory	NOUN
ajlm-2900	169	24	practice	practice	NOUN
ajlm-2900	169	25	.	.	PUNCT
ajlm-2900	170	1	as	as	ADP
ajlm-2900	170	2	such	such	ADJ
ajlm-2900	170	3	,	,	PUNCT
ajlm-2900	170	4	our	our	PRON
ajlm-2900	170	5	wgs	wgs	NOUN
ajlm-2900	170	6	analysis	analysis	NOUN
ajlm-2900	170	7	is	be	AUX
ajlm-2900	170	8	accredited	accredit	VERB
ajlm-2900	170	9	as	as	ADP
ajlm-2900	170	10	per	per	ADP
ajlm-2900	170	11	the	the	DET
ajlm-2900	170	12	international	international	ADJ
ajlm-2900	170	13	iso	iso	NOUN
ajlm-2900	170	14	15189	15189	NUM
ajlm-2900	170	15	standard	standard	NOUN
ajlm-2900	170	16	,	,	PUNCT
ajlm-2900	170	17	and	and	CCONJ
ajlm-2900	170	18	we	we	PRON
ajlm-2900	170	19	are	be	AUX
ajlm-2900	170	20	regularly	regularly	ADV
ajlm-2900	170	21	audited	audit	VERB
ajlm-2900	170	22	by	by	ADP
ajlm-2900	170	23	the	the	DET
ajlm-2900	170	24	south	south	ADJ
ajlm-2900	170	25	african	african	ADJ
ajlm-2900	170	26	national	national	ADJ
ajlm-2900	170	27	accreditation	accreditation	NOUN
ajlm-2900	170	28	system	system	NOUN
ajlm-2900	170	29	,	,	PUNCT
ajlm-2900	170	30	the	the	DET
ajlm-2900	170	31	official	official	ADJ
ajlm-2900	170	32	laboratory	laboratory	NOUN
ajlm-2900	170	33	accreditation	accreditation	NOUN
ajlm-2900	170	34	body	body	NOUN
ajlm-2900	170	35	of	of	ADP
ajlm-2900	170	36	south	south	PROPN
ajlm-2900	170	37	africa	africa	PROPN
ajlm-2900	170	38	.	.	PUNCT
ajlm-2900	171	1	validation	validation	NOUN
ajlm-2900	171	2	of	of	ADP
ajlm-2900	171	3	our	our	PRON
ajlm-2900	171	4	wgs	wgs	NOUN
ajlm-2900	171	5	analysis	analysis	NOUN
ajlm-2900	171	6	is	be	AUX
ajlm-2900	171	7	continuously	continuously	ADV
ajlm-2900	171	8	affirmed	affirm	VERB
ajlm-2900	171	9	by	by	ADP
ajlm-2900	171	10	annual	annual	ADJ
ajlm-2900	171	11	participation	participation	NOUN
ajlm-2900	171	12	in	in	ADP
ajlm-2900	171	13	two	two	NUM
ajlm-2900	171	14	external	external	ADJ
ajlm-2900	171	15	wgs	wgs	NOUN
ajlm-2900	171	16	quality	quality	NOUN
ajlm-2900	171	17	assessment	assessment	NOUN
ajlm-2900	171	18	schemes	scheme	NOUN
ajlm-2900	171	19	,	,	PUNCT
ajlm-2900	171	20	one	one	NUM
ajlm-2900	171	21	managed	manage	VERB
ajlm-2900	171	22	by	by	ADP
ajlm-2900	171	23	the	the	DET
ajlm-2900	171	24	national	national	PROPN
ajlm-2900	171	25	institute	institute	PROPN
ajlm-2900	171	26	for	for	ADP
ajlm-2900	171	27	public	public	ADJ
ajlm-2900	171	28	health	health	NOUN
ajlm-2900	171	29	and	and	CCONJ
ajlm-2900	171	30	the	the	DET
ajlm-2900	171	31	environment	environment	NOUN
ajlm-2900	171	32	,	,	PUNCT
ajlm-2900	171	33	the	the	DET
ajlm-2900	171	34	netherlands	netherlands	PROPN
ajlm-2900	171	35	,	,	PUNCT
ajlm-2900	171	36	in	in	ADP
ajlm-2900	171	37	collaboration	collaboration	NOUN
ajlm-2900	171	38	with	with	ADP
ajlm-2900	171	39	the	the	DET
ajlm-2900	171	40	european	european	ADJ
ajlm-2900	171	41	centre	centre	PROPN
ajlm-2900	171	42	for	for	ADP
ajlm-2900	171	43	disease	disease	NOUN
ajlm-2900	171	44	control,24	control,24	VERB
ajlm-2900	171	45	and	and	CCONJ
ajlm-2900	171	46	the	the	DET
ajlm-2900	171	47	other	other	ADJ
ajlm-2900	171	48	managed	manage	VERB
ajlm-2900	171	49	by	by	ADP
ajlm-2900	171	50	the	the	DET
ajlm-2900	171	51	national	national	PROPN
ajlm-2900	171	52	food	food	PROPN
ajlm-2900	171	53	institute	institute	PROPN
ajlm-2900	171	54	,	,	PUNCT
ajlm-2900	171	55	technical	technical	ADJ
ajlm-2900	171	56	university	university	PROPN
ajlm-2900	171	57	of	of	ADP
ajlm-2900	171	58	denmark.25	denmark.25	NOUN
ajlm-2900	171	59	in	in	ADP
ajlm-2900	171	60	the	the	DET
ajlm-2900	171	61	last	last	ADJ
ajlm-2900	171	62	5	5	NUM
ajlm-2900	171	63	years	year	NOUN
ajlm-2900	171	64	,	,	PUNCT
ajlm-2900	171	65	next	next	ADJ
ajlm-2900	171	66	-	-	PUNCT
ajlm-2900	171	67	generation	generation	NOUN
ajlm-2900	171	68	sequencing	sequence	VERB
ajlm-2900	171	69	technology	technology	NOUN
ajlm-2900	171	70	has	have	AUX
ajlm-2900	171	71	advanced	advance	VERB
ajlm-2900	171	72	rapidly	rapidly	ADV
ajlm-2900	171	73	,	,	PUNCT
ajlm-2900	171	74	resulting	result	VERB
ajlm-2900	171	75	in	in	ADP
ajlm-2900	171	76	shorter	short	ADJ
ajlm-2900	171	77	turnaround	turnaround	NOUN
ajlm-2900	171	78	times	time	NOUN
ajlm-2900	171	79	to	to	ADP
ajlm-2900	171	80	wgs	wgs	VERB
ajlm-2900	171	81	results	result	NOUN
ajlm-2900	171	82	and	and	CCONJ
ajlm-2900	171	83	higher	high	ADJ
ajlm-2900	171	84	accuracy	accuracy	NOUN
ajlm-2900	171	85	of	of	ADP
ajlm-2900	171	86	sequencing	sequence	VERB
ajlm-2900	171	87	data	datum	NOUN
ajlm-2900	171	88	.	.	PUNCT
ajlm-2900	172	1	in	in	ADP
ajlm-2900	172	2	parallel	parallel	NOUN
ajlm-2900	172	3	,	,	PUNCT
ajlm-2900	172	4	costs	cost	NOUN
ajlm-2900	172	5	of	of	ADP
ajlm-2900	172	6	next	next	ADJ
ajlm-2900	172	7	-	-	PUNCT
ajlm-2900	172	8	generation	generation	NOUN
ajlm-2900	172	9	sequencing	sequencing	NOUN
ajlm-2900	172	10	and	and	CCONJ
ajlm-2900	172	11	wgs	wgs	NOUN
ajlm-2900	172	12	have	have	AUX
ajlm-2900	172	13	also	also	ADV
ajlm-2900	172	14	decreased	decrease	VERB
ajlm-2900	172	15	dramatically	dramatically	ADV
ajlm-2900	172	16	over	over	ADP
ajlm-2900	172	17	recent	recent	ADJ
ajlm-2900	172	18	years	year	NOUN
ajlm-2900	172	19	,	,	PUNCT
ajlm-2900	172	20	making	make	VERB
ajlm-2900	172	21	the	the	DET
ajlm-2900	172	22	technology	technology	NOUN
ajlm-2900	172	23	more	more	ADV
ajlm-2900	172	24	affordable	affordable	ADJ
ajlm-2900	172	25	and	and	CCONJ
ajlm-2900	172	26	cost	cost	NOUN
ajlm-2900	172	27	-	-	PUNCT
ajlm-2900	172	28	effective	effective	ADJ
ajlm-2900	172	29	for	for	ADP
ajlm-2900	172	30	use	use	NOUN
ajlm-2900	172	31	in	in	ADP
ajlm-2900	172	32	public	public	ADJ
ajlm-2900	172	33	health	health	NOUN
ajlm-2900	172	34	laboratories	laboratory	NOUN
ajlm-2900	172	35	.	.	PUNCT
ajlm-2900	173	1	year	year	NOUN
ajlm-2900	173	2	-	-	PUNCT
ajlm-2900	173	3	on	on	ADP
ajlm-2900	173	4	-	-	PUNCT
ajlm-2900	173	5	year	year	NOUN
ajlm-2900	173	6	decrease	decrease	NOUN
ajlm-2900	173	7	in	in	ADP
ajlm-2900	173	8	wgs	wgs	NOUN
ajlm-2900	173	9	costs	cost	NOUN
ajlm-2900	173	10	has	have	AUX
ajlm-2900	173	11	also	also	ADV
ajlm-2900	173	12	been	be	AUX
ajlm-2900	173	13	noted	note	VERB
ajlm-2900	173	14	by	by	ADP
ajlm-2900	173	15	ced	ced	PROPN
ajlm-2900	173	16	,	,	PUNCT
ajlm-2900	173	17	nicd	nicd	NOUN
ajlm-2900	173	18	,	,	PUNCT
ajlm-2900	173	19	where	where	SCONJ
ajlm-2900	173	20	the	the	DET
ajlm-2900	173	21	cost	cost	NOUN
ajlm-2900	173	22	to	to	PART
ajlm-2900	173	23	perform	perform	VERB
ajlm-2900	173	24	illumina	illumina	PROPN
ajlm-2900	173	25	wgs	wgs	NOUN
ajlm-2900	173	26	on	on	ADP
ajlm-2900	173	27	a	a	DET
ajlm-2900	173	28	single	single	ADJ
ajlm-2900	173	29	salmonella	salmonella	NOUN
ajlm-2900	173	30	isolate	isolate	NOUN
ajlm-2900	173	31	in	in	ADP
ajlm-2900	173	32	january	january	PROPN
ajlm-2900	173	33	2020	2020	NUM
ajlm-2900	173	34	as	as	ADP
ajlm-2900	173	35	compared	compare	VERB
ajlm-2900	173	36	to	to	ADP
ajlm-2900	173	37	the	the	DET
ajlm-2900	173	38	cost	cost	NOUN
ajlm-2900	173	39	in	in	ADP
ajlm-2900	173	40	december	december	PROPN
ajlm-2900	173	41	2023	2023	NUM
ajlm-2900	173	42	decreased	decrease	VERB
ajlm-2900	173	43	by	by	ADP
ajlm-2900	173	44	51.8	51.8	NUM
ajlm-2900	173	45	%	%	NOUN
ajlm-2900	173	46	.	.	PUNCT
ajlm-2900	174	1	in	in	ADP
ajlm-2900	174	2	south	south	PROPN
ajlm-2900	174	3	africa	africa	PROPN
ajlm-2900	174	4	,	,	PUNCT
ajlm-2900	174	5	the	the	DET
ajlm-2900	174	6	costs	cost	NOUN
ajlm-2900	174	7	associated	associate	VERB
ajlm-2900	174	8	with	with	ADP
ajlm-2900	174	9	illumina	illumina	ADJ
ajlm-2900	174	10	sequencing	sequencing	NOUN
ajlm-2900	174	11	is	be	AUX
ajlm-2900	174	12	generally	generally	ADV
ajlm-2900	174	13	more	more	ADV
ajlm-2900	174	14	affordable	affordable	ADJ
ajlm-2900	174	15	as	as	SCONJ
ajlm-2900	174	16	compared	compare	VERB
ajlm-2900	174	17	to	to	ADP
ajlm-2900	174	18	many	many	ADJ
ajlm-2900	174	19	other	other	ADJ
ajlm-2900	174	20	african	african	ADJ
ajlm-2900	174	21	countries	country	NOUN
ajlm-2900	174	22	(	(	PUNCT
ajlm-2900	174	23	anecdotal	anecdotal	ADJ
ajlm-2900	174	24	evidence	evidence	NOUN
ajlm-2900	174	25	)	)	PUNCT
ajlm-2900	174	26	.	.	PUNCT
ajlm-2900	175	1	to	to	ADP
ajlm-2900	175	2	some	some	DET
ajlm-2900	175	3	extent	extent	NOUN
ajlm-2900	175	4	,	,	PUNCT
ajlm-2900	175	5	this	this	DET
ajlm-2900	175	6	affordability	affordability	NOUN
ajlm-2900	175	7	in	in	ADP
ajlm-2900	175	8	south	south	PROPN
ajlm-2900	175	9	africa	africa	PROPN
ajlm-2900	175	10	can	can	AUX
ajlm-2900	175	11	probably	probably	ADV
ajlm-2900	175	12	be	be	AUX
ajlm-2900	175	13	attributed	attribute	VERB
ajlm-2900	175	14	to	to	ADP
ajlm-2900	175	15	the	the	DET
ajlm-2900	175	16	presence	presence	NOUN
ajlm-2900	175	17	of	of	ADP
ajlm-2900	175	18	an	an	DET
ajlm-2900	175	19	official	official	ADJ
ajlm-2900	175	20	illumina	illumina	NOUN
ajlm-2900	175	21	product	product	NOUN
ajlm-2900	175	22	distributor	distributor	NOUN
ajlm-2900	175	23	in	in	ADP
ajlm-2900	175	24	the	the	DET
ajlm-2900	175	25	country	country	NOUN
ajlm-2900	175	26	,	,	PUNCT
ajlm-2900	175	27	namely	namely	ADV
ajlm-2900	175	28	separations	separation	NOUN
ajlm-2900	175	29	(	(	PUNCT
ajlm-2900	175	30	https://separations.co.za/	https://separations.co.za/	PROPN
ajlm-2900	175	31	)	)	PUNCT
ajlm-2900	175	32	.	.	PUNCT
ajlm-2900	176	1	this	this	PRON
ajlm-2900	176	2	not	not	PART
ajlm-2900	176	3	only	only	ADV
ajlm-2900	176	4	ensures	ensure	VERB
ajlm-2900	176	5	the	the	DET
ajlm-2900	176	6	affordability	affordability	NOUN
ajlm-2900	176	7	of	of	ADP
ajlm-2900	176	8	reagents	reagent	NOUN
ajlm-2900	176	9	and	and	CCONJ
ajlm-2900	176	10	consumables	consumable	NOUN
ajlm-2900	176	11	but	but	CCONJ
ajlm-2900	176	12	also	also	ADV
ajlm-2900	176	13	ensures	ensure	VERB
ajlm-2900	176	14	rapid	rapid	ADJ
ajlm-2900	176	15	order	order	NOUN
ajlm-2900	176	16	and	and	CCONJ
ajlm-2900	176	17	delivery	delivery	NOUN
ajlm-2900	176	18	of	of	ADP
ajlm-2900	176	19	said	say	VERB
ajlm-2900	176	20	reagents	reagent	NOUN
ajlm-2900	176	21	and	and	CCONJ
ajlm-2900	176	22	consumables	consumable	NOUN
ajlm-2900	176	23	,	,	PUNCT
ajlm-2900	176	24	timely	timely	ADJ
ajlm-2900	176	25	maintenance	maintenance	NOUN
ajlm-2900	176	26	and	and	CCONJ
ajlm-2900	176	27	repair	repair	NOUN
ajlm-2900	176	28	of	of	ADP
ajlm-2900	176	29	illumina	illumina	PROPN
ajlm-2900	176	30	equipment	equipment	NOUN
ajlm-2900	176	31	,	,	PUNCT
ajlm-2900	176	32	and	and	CCONJ
ajlm-2900	176	33	overall	overall	ADJ
ajlm-2900	176	34	good	good	ADJ
ajlm-2900	176	35	customer	customer	NOUN
ajlm-2900	176	36	support	support	NOUN
ajlm-2900	176	37	.	.	PUNCT
ajlm-2900	177	1	of	of	ADP
ajlm-2900	177	2	the	the	DET
ajlm-2900	177	3	8006	8006	NUM
ajlm-2900	177	4	salmonella	salmonella	NOUN
ajlm-2900	177	5	isolates	isolate	NOUN
ajlm-2900	177	6	analysed	analyse	VERB
ajlm-2900	177	7	using	use	VERB
ajlm-2900	177	8	wgs	wgs	NOUN
ajlm-2900	177	9	,	,	PUNCT
ajlm-2900	177	10	130	130	NUM
ajlm-2900	177	11	distinctive	distinctive	ADJ
ajlm-2900	177	12	salmonella	salmonella	NOUN
ajlm-2900	177	13	serovars	serovar	NOUN
ajlm-2900	177	14	and	and	CCONJ
ajlm-2900	177	15	subspecies	subspecie	NOUN
ajlm-2900	177	16	were	be	AUX
ajlm-2900	177	17	identified	identify	VERB
ajlm-2900	177	18	(	(	PUNCT
ajlm-2900	177	19	figure	figure	NOUN
ajlm-2900	177	20	1	1	NUM
ajlm-2900	177	21	)	)	PUNCT
ajlm-2900	177	22	.	.	PUNCT
ajlm-2900	178	1	salmonella	salmonella	NOUN
ajlm-2900	178	2	enteritidis	enteritidi	NOUN
ajlm-2900	178	3	and	and	CCONJ
ajlm-2900	178	4	salmonella	salmonella	NOUN
ajlm-2900	178	5	typhimurium	typhimurium	NOUN
ajlm-2900	178	6	(	(	PUNCT
ajlm-2900	178	7	5701/8006	5701/8006	NUM
ajlm-2900	178	8	;	;	PUNCT
ajlm-2900	178	9	71.2	71.2	NUM
ajlm-2900	178	10	%	%	NOUN
ajlm-2900	178	11	)	)	PUNCT
ajlm-2900	178	12	were	be	AUX
ajlm-2900	178	13	the	the	DET
ajlm-2900	178	14	most	most	ADV
ajlm-2900	178	15	prevalent	prevalent	ADJ
ajlm-2900	178	16	,	,	PUNCT
ajlm-2900	178	17	which	which	PRON
ajlm-2900	178	18	aligns	align	VERB
ajlm-2900	178	19	with	with	ADP
ajlm-2900	178	20	global	global	ADJ
ajlm-2900	178	21	trends.5,26,27	trends.5,26,27	NOUN
ajlm-2900	178	22	the	the	DET
ajlm-2900	178	23	following	following	ADJ
ajlm-2900	178	24	serovars	serovar	NOUN
ajlm-2900	178	25	or	or	CCONJ
ajlm-2900	178	26	subspecies	subspecie	NOUN
ajlm-2900	178	27	completed	complete	VERB
ajlm-2900	178	28	our	our	PRON
ajlm-2900	178	29	top	top	ADJ
ajlm-2900	178	30	(	(	PUNCT
ajlm-2900	178	31	most	most	ADV
ajlm-2900	178	32	common	common	ADJ
ajlm-2900	178	33	)	)	PUNCT
ajlm-2900	178	34	eight	eight	NUM
ajlm-2900	178	35	:	:	PUNCT
ajlm-2900	178	36	salmonella	salmonella	NOUN
ajlm-2900	178	37	typhi	typhi	ADV
ajlm-2900	178	38	,	,	PUNCT
ajlm-2900	178	39	s.	s.	PROPN
ajlm-2900	178	40	enterica	enterica	PROPN
ajlm-2900	178	41	subspecies	subspecie	NOUN
ajlm-2900	178	42	salamae	salamae	VERB
ajlm-2900	178	43	,	,	PUNCT
ajlm-2900	178	44	salmonella	salmonella	NOUN
ajlm-2900	178	45	isangi	isangi	PROPN
ajlm-2900	178	46	,	,	PUNCT
ajlm-2900	178	47	salmonella	salmonella	PROPN
ajlm-2900	178	48	dublin	dublin	PROPN
ajlm-2900	178	49	,	,	PUNCT
ajlm-2900	178	50	salmonella	salmonella	NOUN
ajlm-2900	178	51	muenchen	muenchen	NOUN
ajlm-2900	178	52	,	,	PUNCT
ajlm-2900	178	53	and	and	CCONJ
ajlm-2900	178	54	salmonella	salmonella	NOUN
ajlm-2900	178	55	infantis	infantis	NOUN
ajlm-2900	178	56	.	.	PUNCT
ajlm-2900	179	1	for	for	ADP
ajlm-2900	179	2	salmonella	salmonella	NOUN
ajlm-2900	179	3	enteritidis	enteritidi	NOUN
ajlm-2900	179	4	,	,	PUNCT
ajlm-2900	179	5	this	this	DET
ajlm-2900	179	6	serovar	serovar	NOUN
ajlm-2900	179	7	was	be	AUX
ajlm-2900	179	8	associated	associate	VERB
ajlm-2900	179	9	with	with	ADP
ajlm-2900	179	10	the	the	DET
ajlm-2900	179	11	majority	majority	NOUN
ajlm-2900	179	12	of	of	ADP
ajlm-2900	179	13	our	our	PRON
ajlm-2900	179	14	cluster	cluster	NOUN
ajlm-2900	179	15	and	and	CCONJ
ajlm-2900	179	16	outbreak	outbreak	NOUN
ajlm-2900	179	17	investigations	investigation	NOUN
ajlm-2900	179	18	(	(	PUNCT
ajlm-2900	179	19	table	table	NOUN
ajlm-2900	179	20	1	1	NUM
ajlm-2900	179	21	)	)	PUNCT
ajlm-2900	179	22	,	,	PUNCT
ajlm-2900	179	23	and	and	CCONJ
ajlm-2900	179	24	was	be	AUX
ajlm-2900	179	25	mostly	mostly	ADV
ajlm-2900	179	26	associated	associate	VERB
ajlm-2900	179	27	with	with	ADP
ajlm-2900	179	28	a	a	DET
ajlm-2900	179	29	low	low	ADJ
ajlm-2900	179	30	prevalence	prevalence	NOUN
ajlm-2900	179	31	of	of	ADP
ajlm-2900	179	32	amr	amr	PROPN
ajlm-2900	179	33	(	(	PUNCT
ajlm-2900	179	34	table	table	NOUN
ajlm-2900	179	35	2	2	NUM
ajlm-2900	179	36	)	)	PUNCT
ajlm-2900	179	37	.	.	PUNCT
ajlm-2900	180	1	among	among	ADP
ajlm-2900	180	2	salmonella	salmonella	PROPN
ajlm-2900	180	3	typhimurium	typhimurium	NOUN
ajlm-2900	180	4	,	,	PUNCT
ajlm-2900	180	5	the	the	DET
ajlm-2900	180	6	st313	st313	ADJ
ajlm-2900	180	7	variant	variant	NOUN
ajlm-2900	180	8	was	be	AUX
ajlm-2900	180	9	commonly	commonly	ADV
ajlm-2900	180	10	encountered	encounter	VERB
ajlm-2900	180	11	(	(	PUNCT
ajlm-2900	180	12	269/1430	269/1430	NUM
ajlm-2900	180	13	;	;	PUNCT
ajlm-2900	180	14	18.8	18.8	NUM
ajlm-2900	180	15	%	%	NOUN
ajlm-2900	180	16	)	)	PUNCT
ajlm-2900	180	17	.	.	PUNCT
ajlm-2900	181	1	the	the	DET
ajlm-2900	181	2	st313	st313	PROPN
ajlm-2900	181	3	variants	variant	NOUN
ajlm-2900	181	4	are	be	AUX
ajlm-2900	181	5	known	know	VERB
ajlm-2900	181	6	to	to	PART
ajlm-2900	181	7	be	be	AUX
ajlm-2900	181	8	highly	highly	ADV
ajlm-2900	181	9	associated	associate	VERB
ajlm-2900	181	10	with	with	ADP
ajlm-2900	181	11	salmonella	salmonella	NOUN
ajlm-2900	181	12	bloodstream	bloodstream	NOUN
ajlm-2900	181	13	infections	infection	NOUN
ajlm-2900	181	14	in	in	ADP
ajlm-2900	181	15	africa.28	africa.28	NOUN
ajlm-2900	181	16	our	our	PRON
ajlm-2900	181	17	reported	report	VERB
ajlm-2900	181	18	st313	st313	PROPN
ajlm-2900	181	19	variants	variant	NOUN
ajlm-2900	181	20	were	be	AUX
ajlm-2900	181	21	mostly	mostly	ADV
ajlm-2900	181	22	(	(	PUNCT
ajlm-2900	181	23	232/269	232/269	NUM
ajlm-2900	181	24	;	;	PUNCT
ajlm-2900	181	25	86.2	86.2	NUM
ajlm-2900	181	26	%	%	NOUN
ajlm-2900	181	27	)	)	PUNCT
ajlm-2900	181	28	pan	pan	NOUN
ajlm-2900	181	29	-	-	ADJ
ajlm-2900	181	30	susceptible	susceptible	ADJ
ajlm-2900	181	31	(	(	PUNCT
ajlm-2900	181	32	figure	figure	NOUN
ajlm-2900	181	33	5	5	NUM
ajlm-2900	181	34	)	)	PUNCT
ajlm-2900	181	35	,	,	PUNCT
ajlm-2900	181	36	which	which	PRON
ajlm-2900	181	37	was	be	AUX
ajlm-2900	181	38	an	an	DET
ajlm-2900	181	39	interesting	interesting	ADJ
ajlm-2900	181	40	finding	finding	NOUN
ajlm-2900	181	41	,	,	PUNCT
ajlm-2900	181	42	considering	consider	VERB
ajlm-2900	181	43	that	that	SCONJ
ajlm-2900	181	44	literature	literature	NOUN
ajlm-2900	181	45	reports	report	VERB
ajlm-2900	181	46	st313	st313	PROPN
ajlm-2900	181	47	variants	variant	NOUN
ajlm-2900	181	48	as	as	ADP
ajlm-2900	181	49	typically	typically	ADV
ajlm-2900	181	50	multidrug	multidrug	NOUN
ajlm-2900	181	51	-	-	PUNCT
ajlm-2900	181	52	resistant.28	resistant.28	NOUN
ajlm-2900	181	53	for	for	ADP
ajlm-2900	181	54	salmonella	salmonella	NOUN
ajlm-2900	181	55	typhimurium	typhimurium	NOUN
ajlm-2900	181	56	,	,	PUNCT
ajlm-2900	181	57	109/1430	109/1430	NUM
ajlm-2900	181	58	(	(	PUNCT
ajlm-2900	181	59	7.6	7.6	NUM
ajlm-2900	181	60	%	%	NOUN
ajlm-2900	181	61	)	)	PUNCT
ajlm-2900	181	62	of	of	ADP
ajlm-2900	181	63	our	our	PRON
ajlm-2900	181	64	isolates	isolate	NOUN
ajlm-2900	181	65	were	be	AUX
ajlm-2900	181	66	of	of	ADP
ajlm-2900	181	67	the	the	DET
ajlm-2900	181	68	monophasic	monophasic	ADJ
ajlm-2900	181	69	variant	variant	NOUN
ajlm-2900	181	70	,	,	PUNCT
ajlm-2900	181	71	of	of	ADP
ajlm-2900	181	72	which	which	PRON
ajlm-2900	181	73	this	this	DET
ajlm-2900	181	74	variant	variant	NOUN
ajlm-2900	181	75	has	have	AUX
ajlm-2900	181	76	emerged	emerge	VERB
ajlm-2900	181	77	globally	globally	ADV
ajlm-2900	181	78	to	to	PART
ajlm-2900	181	79	become	become	VERB
ajlm-2900	181	80	an	an	DET
ajlm-2900	181	81	important	important	ADJ
ajlm-2900	181	82	pandemic	pandemic	ADJ
ajlm-2900	181	83	variant	variant	NOUN
ajlm-2900	181	84	with	with	ADP
ajlm-2900	181	85	increasing	increase	VERB
ajlm-2900	181	86	amr,27,29	amr,27,29	PROPN
ajlm-2900	181	87	and	and	CCONJ
ajlm-2900	181	88	increasingly	increasingly	ADV
ajlm-2900	181	89	associated	associate	VERB
ajlm-2900	181	90	with	with	ADP
ajlm-2900	181	91	foodborne	foodborne	ADJ
ajlm-2900	181	92	disease	disease	NOUN
ajlm-2900	181	93	outbreaks.30	outbreaks.30	VERB
ajlm-2900	181	94	for	for	ADP
ajlm-2900	181	95	salmonella	salmonella	NOUN
ajlm-2900	181	96	typhi	typhi	VERB
ajlm-2900	181	97	,	,	PUNCT
ajlm-2900	181	98	most	most	ADJ
ajlm-2900	181	99	(	(	PUNCT
ajlm-2900	181	100	414/482	414/482	NUM
ajlm-2900	181	101	;	;	PUNCT
ajlm-2900	181	102	85.9	85.9	NUM
ajlm-2900	181	103	%	%	NOUN
ajlm-2900	181	104	)	)	PUNCT
ajlm-2900	181	105	of	of	ADP
ajlm-2900	181	106	our	our	PRON
ajlm-2900	181	107	isolates	isolate	NOUN
ajlm-2900	181	108	were	be	AUX
ajlm-2900	181	109	of	of	ADP
ajlm-2900	181	110	the	the	DET
ajlm-2900	181	111	h58	h58	PROPN
ajlm-2900	181	112	haplotype	haplotype	NOUN
ajlm-2900	181	113	(	(	PUNCT
ajlm-2900	181	114	genotype	genotype	NOUN
ajlm-2900	181	115	4.3.1	4.3.1	NUM
ajlm-2900	181	116	)	)	PUNCT
ajlm-2900	181	117	strain	strain	NOUN
ajlm-2900	181	118	(	(	PUNCT
ajlm-2900	181	119	figure	figure	NOUN
ajlm-2900	181	120	2	2	NUM
ajlm-2900	181	121	)	)	PUNCT
ajlm-2900	181	122	.	.	PUNCT
ajlm-2900	182	1	the	the	DET
ajlm-2900	182	2	h58	h58	PROPN
ajlm-2900	182	3	haplotype	haplotype	NOUN
ajlm-2900	182	4	is	be	AUX
ajlm-2900	182	5	a	a	DET
ajlm-2900	182	6	globally	globally	ADV
ajlm-2900	182	7	dominant	dominant	ADJ
ajlm-2900	182	8	variant	variant	NOUN
ajlm-2900	182	9	of	of	ADP
ajlm-2900	182	10	salmonella	salmonella	NOUN
ajlm-2900	182	11	typhi	typhi	ADJ
ajlm-2900	182	12	and	and	CCONJ
ajlm-2900	182	13	commonly	commonly	ADV
ajlm-2900	182	14	associated	associate	VERB
ajlm-2900	182	15	with	with	ADP
ajlm-2900	182	16	amr.31	amr.31	PROPN
ajlm-2900	182	17	we	we	PRON
ajlm-2900	182	18	were	be	AUX
ajlm-2900	182	19	able	able	ADJ
ajlm-2900	182	20	to	to	PART
ajlm-2900	182	21	identify	identify	VERB
ajlm-2900	182	22	the	the	DET
ajlm-2900	182	23	h58	h58	PROPN
ajlm-2900	182	24	haplotype	haplotype	NOUN
ajlm-2900	182	25	using	use	VERB
ajlm-2900	182	26	the	the	DET
ajlm-2900	182	27	enterobase	enterobase	NOUN
ajlm-2900	182	28	cgmlst	cgmlst	PROPN
ajlm-2900	182	29	hierarchical	hierarchical	ADJ
ajlm-2900	182	30	cluster	cluster	NOUN
ajlm-2900	182	31	assignment	assignment	NOUN
ajlm-2900	182	32	tool	tool	NOUN
ajlm-2900	182	33	,	,	PUNCT
ajlm-2900	182	34	where	where	SCONJ
ajlm-2900	182	35	hc50:202	hc50:202	PROPN
ajlm-2900	182	36	is	be	AUX
ajlm-2900	182	37	known	know	VERB
ajlm-2900	182	38	to	to	PART
ajlm-2900	182	39	be	be	AUX
ajlm-2900	182	40	indicative	indicative	ADJ
ajlm-2900	182	41	of	of	ADP
ajlm-2900	182	42	the	the	DET
ajlm-2900	182	43	h58	h58	PROPN
ajlm-2900	182	44	haplotype	haplotype	NOUN
ajlm-2900	182	45	.	.	PUNCT
ajlm-2900	183	1	among	among	ADP
ajlm-2900	183	2	our	our	PRON
ajlm-2900	183	3	salmonella	salmonella	NOUN
ajlm-2900	183	4	typhi	typhi	NOUN
ajlm-2900	183	5	h58	h58	NOUN
ajlm-2900	183	6	haplotype	haplotype	NOUN
ajlm-2900	183	7	strains	strain	NOUN
ajlm-2900	183	8	,	,	PUNCT
ajlm-2900	183	9	most	most	ADJ
ajlm-2900	183	10	(	(	PUNCT
ajlm-2900	183	11	411/414	411/414	NOUN
ajlm-2900	183	12	;	;	PUNCT
ajlm-2900	183	13	99.3	99.3	NUM
ajlm-2900	183	14	%	%	NOUN
ajlm-2900	183	15	)	)	PUNCT
ajlm-2900	183	16	showed	show	VERB
ajlm-2900	183	17	amr	amr	ADJ
ajlm-2900	183	18	determinants	determinant	NOUN
ajlm-2900	183	19	associated	associate	VERB
ajlm-2900	183	20	with	with	ADP
ajlm-2900	183	21	≥	≥	NUM
ajlm-2900	183	22	4	4	NUM
ajlm-2900	183	23	classes	class	NOUN
ajlm-2900	183	24	of	of	ADP
ajlm-2900	183	25	antimicrobials	antimicrobial	NOUN
ajlm-2900	183	26	,	,	PUNCT
ajlm-2900	183	27	commonly	commonly	ADV
ajlm-2900	183	28	including	include	VERB
ajlm-2900	183	29	the	the	DET
ajlm-2900	183	30	following	follow	VERB
ajlm-2900	183	31	resistome	resistome	NOUN
ajlm-2900	183	32	:	:	PUNCT
ajlm-2900	183	33	blatem-1b	blatem-1b	NOUN
ajlm-2900	183	34	,	,	PUNCT
ajlm-2900	183	35	cata1	cata1	PROPN
ajlm-2900	183	36	,	,	PUNCT
ajlm-2900	183	37	sul1	sul1	PROPN
ajlm-2900	183	38	,	,	PUNCT
ajlm-2900	183	39	sul2	sul2	PROPN
ajlm-2900	183	40	,	,	PUNCT
ajlm-2900	183	41	dfra7	dfra7	PROPN
ajlm-2900	183	42	.	.	PUNCT
ajlm-2900	184	1	salmonella	salmonella	PROPN
ajlm-2900	184	2	typhi	typhi	PROPN
ajlm-2900	184	3	was	be	AUX
ajlm-2900	184	4	often	often	ADV
ajlm-2900	184	5	associated	associate	VERB
ajlm-2900	184	6	with	with	ADP
ajlm-2900	184	7	our	our	PRON
ajlm-2900	184	8	cluster	cluster	NOUN
ajlm-2900	184	9	and	and	CCONJ
ajlm-2900	184	10	outbreak	outbreak	NOUN
ajlm-2900	184	11	investigations	investigation	NOUN
ajlm-2900	184	12	(	(	PUNCT
ajlm-2900	184	13	table	table	NOUN
ajlm-2900	184	14	1	1	NUM
ajlm-2900	184	15	)	)	PUNCT
ajlm-2900	184	16	.	.	PUNCT
ajlm-2900	185	1	a	a	DET
ajlm-2900	185	2	notable	notable	ADJ
ajlm-2900	185	3	investigation	investigation	NOUN
ajlm-2900	185	4	involved	involve	VERB
ajlm-2900	185	5	salmonella	salmonella	NOUN
ajlm-2900	185	6	typhi	typhi	NOUN
ajlm-2900	185	7	cases	case	NOUN
ajlm-2900	185	8	in	in	ADP
ajlm-2900	185	9	2020	2020	NUM
ajlm-2900	185	10	to	to	ADP
ajlm-2900	185	11	2022	2022	NUM
ajlm-2900	185	12	,	,	PUNCT
ajlm-2900	185	13	associated	associate	VERB
ajlm-2900	185	14	with	with	ADP
ajlm-2900	185	15	an	an	DET
ajlm-2900	185	16	outbreak	outbreak	NOUN
ajlm-2900	185	17	among	among	ADP
ajlm-2900	185	18	illegal	illegal	ADJ
ajlm-2900	185	19	gold	gold	NOUN
ajlm-2900	185	20	miners	miner	NOUN
ajlm-2900	185	21	,	,	PUNCT
ajlm-2900	185	22	likely	likely	ADV
ajlm-2900	185	23	resulting	result	VERB
ajlm-2900	185	24	from	from	ADP
ajlm-2900	185	25	the	the	DET
ajlm-2900	185	26	consumption	consumption	NOUN
ajlm-2900	185	27	of	of	ADP
ajlm-2900	185	28	contaminated	contaminated	ADJ
ajlm-2900	185	29	groundwater	groundwater	NOUN
ajlm-2900	185	30	while	while	SCONJ
ajlm-2900	185	31	working	work	VERB
ajlm-2900	185	32	in	in	ADP
ajlm-2900	185	33	a	a	DET
ajlm-2900	185	34	gold	gold	NOUN
ajlm-2900	185	35	mine	mine	NOUN
ajlm-2900	185	36	shaft	shaft	NOUN
ajlm-2900	185	37	(	(	PUNCT
ajlm-2900	185	38	table	table	NOUN
ajlm-2900	185	39	1).32	1).32	NUM
ajlm-2900	185	40	salmonella	salmonella	PROPN
ajlm-2900	185	41	enterica	enterica	PROPN
ajlm-2900	185	42	subspecies	subspecie	NOUN
ajlm-2900	185	43	salamae	salamae	VERB
ajlm-2900	185	44	(	(	PUNCT
ajlm-2900	185	45	279/8006	279/8006	NUM
ajlm-2900	185	46	;	;	PUNCT
ajlm-2900	185	47	3.5	3.5	NUM
ajlm-2900	185	48	%	%	NOUN
ajlm-2900	185	49	)	)	PUNCT
ajlm-2900	185	50	was	be	AUX
ajlm-2900	185	51	our	our	PRON
ajlm-2900	185	52	fourth	fourth	ADJ
ajlm-2900	185	53	most	most	ADV
ajlm-2900	185	54	prevalent	prevalent	ADJ
ajlm-2900	185	55	salmonella	salmonella	NOUN
ajlm-2900	185	56	serovar	serovar	NOUN
ajlm-2900	185	57	/	/	SYM
ajlm-2900	185	58	subspecies	subspecie	NOUN
ajlm-2900	185	59	.	.	PUNCT
ajlm-2900	186	1	the	the	DET
ajlm-2900	186	2	s.	s.	PROPN
ajlm-2900	186	3	enterica	enterica	PROPN
ajlm-2900	186	4	subspecies	subspecie	NOUN
ajlm-2900	186	5	salamae	salamae	VERB
ajlm-2900	186	6	isolates	isolate	NOUN
ajlm-2900	186	7	were	be	AUX
ajlm-2900	186	8	genetically	genetically	ADV
ajlm-2900	186	9	diverse	diverse	ADJ
ajlm-2900	186	10	,	,	PUNCT
ajlm-2900	186	11	with	with	ADP
ajlm-2900	186	12	no	no	DET
ajlm-2900	186	13	evidence	evidence	NOUN
ajlm-2900	186	14	to	to	PART
ajlm-2900	186	15	suggest	suggest	VERB
ajlm-2900	186	16	any	any	DET
ajlm-2900	186	17	clonal	clonal	ADJ
ajlm-2900	186	18	spread	spread	NOUN
ajlm-2900	186	19	(	(	PUNCT
ajlm-2900	186	20	data	datum	NOUN
ajlm-2900	186	21	not	not	PART
ajlm-2900	186	22	shown	show	VERB
ajlm-2900	186	23	)	)	PUNCT
ajlm-2900	186	24	.	.	PUNCT
ajlm-2900	187	1	our	our	PRON
ajlm-2900	187	2	s.	s.	PROPN
ajlm-2900	187	3	enterica	enterica	PROPN
ajlm-2900	187	4	subspecies	subspecie	NOUN
ajlm-2900	187	5	salamae	salamae	VERB
ajlm-2900	187	6	data	datum	NOUN
ajlm-2900	187	7	were	be	AUX
ajlm-2900	187	8	a	a	DET
ajlm-2900	187	9	surprise	surprise	NOUN
ajlm-2900	187	10	finding	finding	NOUN
ajlm-2900	187	11	,	,	PUNCT
ajlm-2900	187	12	considering	consider	VERB
ajlm-2900	187	13	that	that	SCONJ
ajlm-2900	187	14	they	they	PRON
ajlm-2900	187	15	are	be	AUX
ajlm-2900	187	16	mostly	mostly	ADV
ajlm-2900	187	17	reported	report	VERB
ajlm-2900	187	18	from	from	ADP
ajlm-2900	187	19	environmental	environmental	ADJ
ajlm-2900	187	20	and	and	CCONJ
ajlm-2900	187	21	animal	animal	NOUN
ajlm-2900	187	22	(	(	PUNCT
ajlm-2900	187	23	mostly	mostly	ADV
ajlm-2900	187	24	cold	cold	ADJ
ajlm-2900	187	25	-	-	PUNCT
ajlm-2900	187	26	blooded	blooded	ADJ
ajlm-2900	187	27	animals	animal	NOUN
ajlm-2900	187	28	like	like	ADP
ajlm-2900	187	29	reptiles	reptile	NOUN
ajlm-2900	187	30	)	)	PUNCT
ajlm-2900	187	31	sources	source	NOUN
ajlm-2900	187	32	,	,	PUNCT
ajlm-2900	187	33	and	and	CCONJ
ajlm-2900	187	34	are	be	AUX
ajlm-2900	187	35	generally	generally	ADV
ajlm-2900	187	36	considered	consider	VERB
ajlm-2900	187	37	less	less	ADV
ajlm-2900	187	38	pathogenic	pathogenic	ADJ
ajlm-2900	187	39	for	for	ADP
ajlm-2900	187	40	humans.33	humans.33	ADJ
ajlm-2900	187	41	the	the	DET
ajlm-2900	187	42	prevalence	prevalence	NOUN
ajlm-2900	187	43	of	of	ADP
ajlm-2900	187	44	this	this	DET
ajlm-2900	187	45	subspecies	subspecie	NOUN
ajlm-2900	187	46	in	in	ADP
ajlm-2900	187	47	south	south	PROPN
ajlm-2900	187	48	africa	africa	PROPN
ajlm-2900	187	49	has	have	AUX
ajlm-2900	187	50	previously	previously	ADV
ajlm-2900	187	51	not	not	PART
ajlm-2900	187	52	been	be	AUX
ajlm-2900	187	53	reported	report	VERB
ajlm-2900	187	54	.	.	PUNCT
ajlm-2900	188	1	historically	historically	ADV
ajlm-2900	188	2	,	,	PUNCT
ajlm-2900	188	3	before	before	ADP
ajlm-2900	188	4	the	the	DET
ajlm-2900	188	5	use	use	NOUN
ajlm-2900	188	6	of	of	ADP
ajlm-2900	188	7	wgs	wgs	NOUN
ajlm-2900	188	8	analysis	analysis	NOUN
ajlm-2900	188	9	,	,	PUNCT
ajlm-2900	188	10	we	we	PRON
ajlm-2900	188	11	would	would	AUX
ajlm-2900	188	12	have	have	VERB
ajlm-2900	188	13	a	a	DET
ajlm-2900	188	14	large	large	ADJ
ajlm-2900	188	15	contingent	contingent	NOUN
ajlm-2900	188	16	of	of	ADP
ajlm-2900	188	17	salmonella	salmonella	NOUN
ajlm-2900	188	18	isolates	isolate	NOUN
ajlm-2900	188	19	reported	report	VERB
ajlm-2900	188	20	as	as	ADP
ajlm-2900	188	21	‘	'	PUNCT
ajlm-2900	188	22	salmonella	salmonella	NOUN
ajlm-2900	188	23	species	specie	NOUN
ajlm-2900	188	24	’	'	PUNCT
ajlm-2900	188	25	,	,	PUNCT
ajlm-2900	188	26	because	because	SCONJ
ajlm-2900	188	27	the	the	DET
ajlm-2900	188	28	traditional	traditional	ADJ
ajlm-2900	188	29	serotyping	serotyping	NOUN
ajlm-2900	188	30	methodologies	methodology	NOUN
ajlm-2900	188	31	(	(	PUNCT
ajlm-2900	188	32	using	use	VERB
ajlm-2900	188	33	antisera	antisera	NOUN
ajlm-2900	188	34	)	)	PUNCT
ajlm-2900	188	35	were	be	AUX
ajlm-2900	188	36	sometimes	sometimes	ADV
ajlm-2900	188	37	inconclusive	inconclusive	ADJ
ajlm-2900	188	38	in	in	ADP
ajlm-2900	188	39	making	make	VERB
ajlm-2900	188	40	a	a	DET
ajlm-2900	188	41	call	call	NOUN
ajlm-2900	188	42	on	on	ADP
ajlm-2900	188	43	subspecies	subspecie	NOUN
ajlm-2900	188	44	or	or	CCONJ
ajlm-2900	188	45	serovar	serovar	NOUN
ajlm-2900	188	46	.	.	PUNCT
ajlm-2900	189	1	now	now	ADV
ajlm-2900	189	2	with	with	ADP
ajlm-2900	189	3	the	the	DET
ajlm-2900	189	4	use	use	NOUN
ajlm-2900	189	5	of	of	ADP
ajlm-2900	189	6	wgs	wgs	NOUN
ajlm-2900	189	7	analysis	analysis	NOUN
ajlm-2900	189	8	tools	tool	NOUN
ajlm-2900	189	9	,	,	PUNCT
ajlm-2900	189	10	salmonella	salmonella	NOUN
ajlm-2900	189	11	characterisation	characterisation	NOUN
ajlm-2900	189	12	is	be	AUX
ajlm-2900	189	13	more	more	ADV
ajlm-2900	189	14	complete	complete	ADJ
ajlm-2900	189	15	and	and	CCONJ
ajlm-2900	189	16	more	more	ADV
ajlm-2900	189	17	accurate	accurate	ADJ
ajlm-2900	189	18	,	,	PUNCT
ajlm-2900	189	19	and	and	CCONJ
ajlm-2900	189	20	is	be	AUX
ajlm-2900	189	21	now	now	ADV
ajlm-2900	189	22	able	able	ADJ
ajlm-2900	189	23	to	to	PART
ajlm-2900	189	24	more	more	ADV
ajlm-2900	189	25	accurately	accurately	ADV
ajlm-2900	189	26	identify	identify	VERB
ajlm-2900	189	27	s.	s.	PROPN
ajlm-2900	189	28	enterica	enterica	PROPN
ajlm-2900	189	29	subspecies	subspecie	NOUN
ajlm-2900	189	30	salamae	salamae	VERB
ajlm-2900	189	31	.	.	PUNCT
ajlm-2900	190	1	these	these	DET
ajlm-2900	190	2	isolates	isolate	NOUN
ajlm-2900	190	3	were	be	AUX
ajlm-2900	190	4	mostly	mostly	ADV
ajlm-2900	190	5	cultured	cultured	ADJ
ajlm-2900	190	6	from	from	ADP
ajlm-2900	190	7	stool	stool	NOUN
ajlm-2900	190	8	specimens	specimen	NOUN
ajlm-2900	190	9	of	of	ADP
ajlm-2900	190	10	patients	patient	NOUN
ajlm-2900	190	11	.	.	PUNCT
ajlm-2900	191	1	unfortunately	unfortunately	ADV
ajlm-2900	191	2	,	,	PUNCT
ajlm-2900	191	3	no	no	DET
ajlm-2900	191	4	further	further	ADJ
ajlm-2900	191	5	information	information	NOUN
ajlm-2900	191	6	was	be	AUX
ajlm-2900	191	7	available	available	ADJ
ajlm-2900	191	8	about	about	ADP
ajlm-2900	191	9	these	these	DET
ajlm-2900	191	10	cases	case	NOUN
ajlm-2900	191	11	,	,	PUNCT
ajlm-2900	191	12	as	as	SCONJ
ajlm-2900	191	13	no	no	DET
ajlm-2900	191	14	follow	follow	VERB
ajlm-2900	191	15	-	-	PUNCT
ajlm-2900	191	16	up	up	ADP
ajlm-2900	191	17	investigations	investigation	NOUN
ajlm-2900	191	18	were	be	AUX
ajlm-2900	191	19	conducted	conduct	VERB
ajlm-2900	191	20	for	for	ADP
ajlm-2900	191	21	these	these	PRON
ajlm-2900	191	22	.	.	PUNCT
ajlm-2900	192	1	also	also	ADV
ajlm-2900	192	2	,	,	PUNCT
ajlm-2900	192	3	we	we	PRON
ajlm-2900	192	4	are	be	AUX
ajlm-2900	192	5	not	not	PART
ajlm-2900	192	6	able	able	ADJ
ajlm-2900	192	7	to	to	PART
ajlm-2900	192	8	speculate	speculate	VERB
ajlm-2900	192	9	on	on	ADP
ajlm-2900	192	10	any	any	DET
ajlm-2900	192	11	possible	possible	ADJ
ajlm-2900	192	12	environmental	environmental	ADJ
ajlm-2900	192	13	or	or	CCONJ
ajlm-2900	192	14	zoonotic	zoonotic	ADJ
ajlm-2900	192	15	source	source	NOUN
ajlm-2900	192	16	for	for	ADP
ajlm-2900	192	17	this	this	DET
ajlm-2900	192	18	subspecies	subspecie	NOUN
ajlm-2900	192	19	,	,	PUNCT
ajlm-2900	192	20	as	as	SCONJ
ajlm-2900	192	21	no	no	DET
ajlm-2900	192	22	further	further	ADJ
ajlm-2900	192	23	investigations	investigation	NOUN
ajlm-2900	192	24	were	be	AUX
ajlm-2900	192	25	conducted	conduct	VERB
ajlm-2900	192	26	.	.	PUNCT
ajlm-2900	193	1	salmonella	salmonella	PROPN
ajlm-2900	193	2	isangi	isangi	PROPN
ajlm-2900	193	3	(	(	PUNCT
ajlm-2900	193	4	167/8006	167/8006	NUM
ajlm-2900	193	5	;	;	PUNCT
ajlm-2900	193	6	2.1	2.1	NUM
ajlm-2900	193	7	%	%	NOUN
ajlm-2900	193	8	)	)	PUNCT
ajlm-2900	193	9	was	be	AUX
ajlm-2900	193	10	our	our	PRON
ajlm-2900	193	11	fifth	fifth	ADJ
ajlm-2900	193	12	most	most	ADV
ajlm-2900	193	13	prevalent	prevalent	ADJ
ajlm-2900	193	14	salmonella	salmonella	NOUN
ajlm-2900	193	15	serovar	serovar	NOUN
ajlm-2900	193	16	or	or	CCONJ
ajlm-2900	193	17	subspecies	subspecie	NOUN
ajlm-2900	193	18	.	.	PUNCT
ajlm-2900	194	1	salmonella	salmonella	PROPN
ajlm-2900	194	2	isangi	isangi	PROPN
ajlm-2900	194	3	represents	represent	VERB
ajlm-2900	194	4	an	an	DET
ajlm-2900	194	5	emerging	emerge	VERB
ajlm-2900	194	6	pathogen	pathogen	NOUN
ajlm-2900	194	7	in	in	ADP
ajlm-2900	194	8	south	south	PROPN
ajlm-2900	194	9	africa	africa	PROPN
ajlm-2900	194	10	.	.	PUNCT
ajlm-2900	195	1	however	however	ADV
ajlm-2900	195	2	,	,	PUNCT
ajlm-2900	195	3	globally	globally	ADV
ajlm-2900	195	4	,	,	PUNCT
ajlm-2900	195	5	salmonella	salmonella	NOUN
ajlm-2900	195	6	isangi	isangi	NOUN
ajlm-2900	195	7	is	be	AUX
ajlm-2900	195	8	an	an	DET
ajlm-2900	195	9	uncommon	uncommon	ADJ
ajlm-2900	195	10	serovar	serovar	NOUN
ajlm-2900	195	11	.	.	PUNCT
ajlm-2900	196	1	very	very	ADV
ajlm-2900	196	2	few	few	ADJ
ajlm-2900	196	3	(	(	PUNCT
ajlm-2900	196	4	n	n	NOUN
ajlm-2900	196	5	=	=	SYM
ajlm-2900	196	6	409	409	NUM
ajlm-2900	196	7	)	)	PUNCT
ajlm-2900	196	8	salmonella	salmonella	NOUN
ajlm-2900	196	9	isangi	isangi	NOUN
ajlm-2900	196	10	isolates	isolate	NOUN
ajlm-2900	196	11	have	have	AUX
ajlm-2900	196	12	been	be	AUX
ajlm-2900	196	13	reported	report	VERB
ajlm-2900	196	14	in	in	ADP
ajlm-2900	196	15	the	the	DET
ajlm-2900	196	16	enterobase	enterobase	NOUN
ajlm-2900	196	17	database	database	NOUN
ajlm-2900	196	18	(	(	PUNCT
ajlm-2900	196	19	as	as	ADP
ajlm-2900	196	20	of	of	ADP
ajlm-2900	196	21	27	27	NUM
ajlm-2900	196	22	march	march	NOUN
ajlm-2900	196	23	2025	2025	NUM
ajlm-2900	196	24	)	)	PUNCT
ajlm-2900	196	25	,	,	PUNCT
ajlm-2900	196	26	with	with	ADP
ajlm-2900	196	27	most	most	ADJ
ajlm-2900	196	28	of	of	ADP
ajlm-2900	196	29	the	the	DET
ajlm-2900	196	30	cases	case	NOUN
ajlm-2900	196	31	(	(	PUNCT
ajlm-2900	196	32	203/409	203/409	NUM
ajlm-2900	196	33	;	;	PUNCT
ajlm-2900	196	34	49.6	49.6	NUM
ajlm-2900	196	35	%	%	NOUN
ajlm-2900	196	36	)	)	PUNCT
ajlm-2900	196	37	reported	report	VERB
ajlm-2900	196	38	from	from	ADP
ajlm-2900	196	39	south	south	PROPN
ajlm-2900	196	40	africa	africa	PROPN
ajlm-2900	196	41	.	.	PUNCT
ajlm-2900	197	1	among	among	ADP
ajlm-2900	197	2	all	all	DET
ajlm-2900	197	3	the	the	DET
ajlm-2900	197	4	serovars	serovar	NOUN
ajlm-2900	197	5	or	or	CCONJ
ajlm-2900	197	6	subspecies	subspecie	NOUN
ajlm-2900	197	7	in	in	ADP
ajlm-2900	197	8	south	south	PROPN
ajlm-2900	197	9	africa	africa	PROPN
ajlm-2900	197	10	,	,	PUNCT
ajlm-2900	197	11	salmonella	salmonella	PROPN
ajlm-2900	197	12	isangi	isangi	PROPN
ajlm-2900	197	13	showed	show	VERB
ajlm-2900	197	14	the	the	DET
ajlm-2900	197	15	highest	high	ADJ
ajlm-2900	197	16	prevalence	prevalence	NOUN
ajlm-2900	197	17	of	of	ADP
ajlm-2900	197	18	amr	amr	PROPN
ajlm-2900	197	19	(	(	PUNCT
ajlm-2900	197	20	table	table	NOUN
ajlm-2900	197	21	2	2	NUM
ajlm-2900	197	22	)	)	PUNCT
ajlm-2900	197	23	.	.	PUNCT
ajlm-2900	198	1	most	most	ADJ
ajlm-2900	198	2	salmonella	salmonella	PROPN
ajlm-2900	198	3	isangi	isangi	NOUN
ajlm-2900	198	4	(	(	PUNCT
ajlm-2900	198	5	159/167	159/167	NUM
ajlm-2900	198	6	;	;	PUNCT
ajlm-2900	198	7	95.2	95.2	NUM
ajlm-2900	198	8	%	%	NOUN
ajlm-2900	198	9	)	)	PUNCT
ajlm-2900	198	10	showed	show	VERB
ajlm-2900	198	11	amr	amr	ADJ
ajlm-2900	198	12	determinants	determinant	NOUN
ajlm-2900	198	13	associated	associate	VERB
ajlm-2900	198	14	with	with	ADP
ajlm-2900	198	15	≥	≥	NOUN
ajlm-2900	198	16	7	7	NUM
ajlm-2900	198	17	classes	class	NOUN
ajlm-2900	198	18	of	of	ADP
ajlm-2900	198	19	antimicrobials	antimicrobial	NOUN
ajlm-2900	198	20	,	,	PUNCT
ajlm-2900	198	21	including	include	VERB
ajlm-2900	198	22	esbl	esbl	NOUN
ajlm-2900	198	23	genes	gene	NOUN
ajlm-2900	198	24	(	(	PUNCT
ajlm-2900	198	25	blaoxa-1	blaoxa-1	NOUN
ajlm-2900	198	26	,	,	PUNCT
ajlm-2900	198	27	blaoxa-10	blaoxa-10	PROPN
ajlm-2900	198	28	,	,	PUNCT
ajlm-2900	198	29	blactx	blactx	NOUN
ajlm-2900	198	30	-	-	PUNCT
ajlm-2900	198	31	m-15	m-15	PROPN
ajlm-2900	198	32	,	,	PUNCT
ajlm-2900	198	33	blatem-63	blatem-63	PROPN
ajlm-2900	198	34	,	,	PUNCT
ajlm-2900	198	35	bladha	bladha	NOUN
ajlm-2900	198	36	)	)	PUNCT
ajlm-2900	198	37	.	.	PUNCT
ajlm-2900	199	1	globally	globally	ADV
ajlm-2900	199	2	(	(	PUNCT
ajlm-2900	199	3	including	include	VERB
ajlm-2900	199	4	south	south	PROPN
ajlm-2900	199	5	africa	africa	PROPN
ajlm-2900	199	6	)	)	PUNCT
ajlm-2900	199	7	,	,	PUNCT
ajlm-2900	199	8	salmonella	salmonella	NOUN
ajlm-2900	199	9	isangi	isangi	NOUN
ajlm-2900	199	10	are	be	AUX
ajlm-2900	199	11	typically	typically	ADV
ajlm-2900	199	12	multidrug	multidrug	NOUN
ajlm-2900	199	13	-	-	PUNCT
ajlm-2900	199	14	resistant	resistant	ADJ
ajlm-2900	199	15	,	,	PUNCT
ajlm-2900	199	16	and	and	CCONJ
ajlm-2900	199	17	are	be	AUX
ajlm-2900	199	18	often	often	ADV
ajlm-2900	199	19	associated	associate	VERB
ajlm-2900	199	20	with	with	ADP
ajlm-2900	199	21	hospital	hospital	NOUN
ajlm-2900	199	22	outbreaks.34,35,36,37	outbreaks.34,35,36,37	NOUN
ajlm-2900	199	23	there	there	PRON
ajlm-2900	199	24	is	be	VERB
ajlm-2900	199	25	a	a	DET
ajlm-2900	199	26	pressing	press	VERB
ajlm-2900	199	27	need	need	NOUN
ajlm-2900	199	28	for	for	SCONJ
ajlm-2900	199	29	studies	study	NOUN
ajlm-2900	199	30	to	to	PART
ajlm-2900	199	31	identify	identify	VERB
ajlm-2900	199	32	the	the	DET
ajlm-2900	199	33	reservoir	reservoir	NOUN
ajlm-2900	199	34	and	and	CCONJ
ajlm-2900	199	35	transmission	transmission	NOUN
ajlm-2900	199	36	pathway	pathway	NOUN
ajlm-2900	199	37	for	for	ADP
ajlm-2900	199	38	salmonella	salmonella	NOUN
ajlm-2900	199	39	isangi	isangi	NOUN
ajlm-2900	199	40	,	,	PUNCT
ajlm-2900	199	41	as	as	SCONJ
ajlm-2900	199	42	this	this	DET
ajlm-2900	199	43	serotype	serotype	NOUN
ajlm-2900	199	44	is	be	AUX
ajlm-2900	199	45	very	very	ADV
ajlm-2900	199	46	capable	capable	ADJ
ajlm-2900	199	47	of	of	ADP
ajlm-2900	199	48	acquiring	acquire	VERB
ajlm-2900	199	49	and	and	CCONJ
ajlm-2900	199	50	retaining	retain	VERB
ajlm-2900	199	51	extensive	extensive	ADJ
ajlm-2900	199	52	drug	drug	NOUN
ajlm-2900	199	53	resistance	resistance	NOUN
ajlm-2900	199	54	,	,	PUNCT
ajlm-2900	199	55	and	and	CCONJ
ajlm-2900	199	56	once	once	ADV
ajlm-2900	199	57	introduced	introduce	VERB
ajlm-2900	199	58	into	into	ADP
ajlm-2900	199	59	the	the	DET
ajlm-2900	199	60	hospital	hospital	NOUN
ajlm-2900	199	61	environment	environment	NOUN
ajlm-2900	199	62	,	,	PUNCT
ajlm-2900	199	63	it	it	PRON
ajlm-2900	199	64	appears	appear	VERB
ajlm-2900	199	65	to	to	PART
ajlm-2900	199	66	happily	happily	ADV
ajlm-2900	199	67	thrive	thrive	VERB
ajlm-2900	199	68	and	and	CCONJ
ajlm-2900	199	69	cause	cause	VERB
ajlm-2900	199	70	lengthy	lengthy	ADJ
ajlm-2900	199	71	hospital	hospital	NOUN
ajlm-2900	199	72	outbreaks.35	outbreaks.35	NOUN
ajlm-2900	199	73	salmonella	salmonella	PROPN
ajlm-2900	199	74	dublin	dublin	NOUN
ajlm-2900	199	75	(	(	PUNCT
ajlm-2900	199	76	114/8006	114/8006	NUM
ajlm-2900	199	77	;	;	PUNCT
ajlm-2900	199	78	1.4	1.4	NUM
ajlm-2900	199	79	%	%	NOUN
ajlm-2900	199	80	)	)	PUNCT
ajlm-2900	199	81	was	be	AUX
ajlm-2900	199	82	our	our	PRON
ajlm-2900	199	83	sixth	sixth	ADJ
ajlm-2900	199	84	most	most	ADV
ajlm-2900	199	85	prevalent	prevalent	ADJ
ajlm-2900	199	86	salmonella	salmonella	NOUN
ajlm-2900	199	87	serovar	serovar	NOUN
ajlm-2900	199	88	or	or	CCONJ
ajlm-2900	199	89	subspecies	subspecie	NOUN
ajlm-2900	199	90	.	.	PUNCT
ajlm-2900	200	1	globally	globally	ADV
ajlm-2900	200	2	,	,	PUNCT
ajlm-2900	200	3	salmonella	salmonella	PROPN
ajlm-2900	200	4	dublin	dublin	PROPN
ajlm-2900	200	5	is	be	AUX
ajlm-2900	200	6	a	a	DET
ajlm-2900	200	7	relatively	relatively	ADV
ajlm-2900	200	8	uncommon	uncommon	ADJ
ajlm-2900	200	9	cause	cause	NOUN
ajlm-2900	200	10	of	of	ADP
ajlm-2900	200	11	human	human	ADJ
ajlm-2900	200	12	infections	infection	NOUN
ajlm-2900	200	13	.	.	PUNCT
ajlm-2900	201	1	salmonella	salmonella	PROPN
ajlm-2900	201	2	dublin	dublin	PROPN
ajlm-2900	201	3	is	be	AUX
ajlm-2900	201	4	host	host	NOUN
ajlm-2900	201	5	-	-	PUNCT
ajlm-2900	201	6	adapted	adapt	VERB
ajlm-2900	201	7	to	to	ADP
ajlm-2900	201	8	cattle	cattle	NOUN
ajlm-2900	201	9	,	,	PUNCT
ajlm-2900	201	10	so	so	ADV
ajlm-2900	201	11	is	be	AUX
ajlm-2900	201	12	most	most	ADV
ajlm-2900	201	13	prevalent	prevalent	ADJ
ajlm-2900	201	14	in	in	ADP
ajlm-2900	201	15	cattle	cattle	NOUN
ajlm-2900	201	16	and	and	CCONJ
ajlm-2900	201	17	cow	cow	NOUN
ajlm-2900	201	18	’s	’s	PART
ajlm-2900	201	19	raw	raw	ADJ
ajlm-2900	201	20	milk	milk	NOUN
ajlm-2900	201	21	cheese	cheese	NOUN
ajlm-2900	201	22	.	.	PUNCT
ajlm-2900	202	1	countries	country	NOUN
ajlm-2900	202	2	that	that	PRON
ajlm-2900	202	3	produce	produce	VERB
ajlm-2900	202	4	large	large	ADJ
ajlm-2900	202	5	volumes	volume	NOUN
ajlm-2900	202	6	of	of	ADP
ajlm-2900	202	7	cheese	cheese	NOUN
ajlm-2900	202	8	(	(	PUNCT
ajlm-2900	202	9	such	such	ADJ
ajlm-2900	202	10	as	as	ADP
ajlm-2900	202	11	france	france	PROPN
ajlm-2900	202	12	)	)	PUNCT
ajlm-2900	202	13	often	often	ADV
ajlm-2900	202	14	show	show	VERB
ajlm-2900	202	15	an	an	DET
ajlm-2900	202	16	increased	increased	ADJ
ajlm-2900	202	17	prevalence	prevalence	NOUN
ajlm-2900	202	18	of	of	ADP
ajlm-2900	202	19	salmonella	salmonella	PROPN
ajlm-2900	202	20	dublin.38,39	dublin.38,39	NOUN
ajlm-2900	202	21	salmonella	salmonella	PROPN
ajlm-2900	202	22	muenchen	muenchen	NOUN
ajlm-2900	202	23	(	(	PUNCT
ajlm-2900	202	24	108/8006	108/8006	NUM
ajlm-2900	202	25	;	;	PUNCT
ajlm-2900	202	26	1.3	1.3	NUM
ajlm-2900	202	27	%	%	NOUN
ajlm-2900	202	28	)	)	PUNCT
ajlm-2900	202	29	was	be	AUX
ajlm-2900	202	30	our	our	PRON
ajlm-2900	202	31	seventh	seventh	ADJ
ajlm-2900	202	32	most	most	ADV
ajlm-2900	202	33	prevalent	prevalent	ADJ
ajlm-2900	202	34	salmonella	salmonella	NOUN
ajlm-2900	202	35	serovar	serovar	NOUN
ajlm-2900	202	36	or	or	CCONJ
ajlm-2900	202	37	subspecies	subspecie	NOUN
ajlm-2900	202	38	.	.	PUNCT
ajlm-2900	203	1	this	this	DET
ajlm-2900	203	2	prevalence	prevalence	NOUN
ajlm-2900	203	3	aligns	align	VERB
ajlm-2900	203	4	with	with	ADP
ajlm-2900	203	5	a	a	DET
ajlm-2900	203	6	global	global	ADJ
ajlm-2900	203	7	reported	report	VERB
ajlm-2900	203	8	prevalence	prevalence	NOUN
ajlm-2900	203	9	of	of	ADP
ajlm-2900	203	10	1.2	1.2	NUM
ajlm-2900	203	11	%	%	NOUN
ajlm-2900	203	12	,	,	PUNCT
ajlm-2900	203	13	where	where	SCONJ
ajlm-2900	203	14	globally	globally	ADV
ajlm-2900	203	15	,	,	PUNCT
ajlm-2900	203	16	salmonella	salmonella	NOUN
ajlm-2900	203	17	muenchen	muenchen	NOUN
ajlm-2900	203	18	is	be	AUX
ajlm-2900	203	19	listed	list	VERB
ajlm-2900	203	20	as	as	ADP
ajlm-2900	203	21	the	the	DET
ajlm-2900	203	22	13th	13th	ADJ
ajlm-2900	203	23	most	most	ADV
ajlm-2900	203	24	prevalent	prevalent	ADJ
ajlm-2900	203	25	salmonella	salmonella	NOUN
ajlm-2900	203	26	serovar.27	serovar.27	PROPN
ajlm-2900	203	27	salmonella	salmonella	PROPN
ajlm-2900	203	28	muenchen	muenchen	NOUN
ajlm-2900	203	29	is	be	AUX
ajlm-2900	203	30	a	a	DET
ajlm-2900	203	31	relatively	relatively	ADV
ajlm-2900	203	32	uncommon	uncommon	ADJ
ajlm-2900	203	33	cause	cause	NOUN
ajlm-2900	203	34	of	of	ADP
ajlm-2900	203	35	human	human	ADJ
ajlm-2900	203	36	infections	infection	NOUN
ajlm-2900	203	37	globally	globally	ADV
ajlm-2900	203	38	and	and	CCONJ
ajlm-2900	203	39	there	there	PRON
ajlm-2900	203	40	are	be	VERB
ajlm-2900	203	41	also	also	ADV
ajlm-2900	203	42	very	very	ADV
ajlm-2900	203	43	few	few	ADJ
ajlm-2900	203	44	documented	document	VERB
ajlm-2900	203	45	reports	report	NOUN
ajlm-2900	203	46	of	of	ADP
ajlm-2900	203	47	outbreaks	outbreak	NOUN
ajlm-2900	203	48	associated	associate	VERB
ajlm-2900	203	49	with	with	ADP
ajlm-2900	203	50	salmonella	salmonella	NOUN
ajlm-2900	203	51	muenchen	muenchen	NOUN
ajlm-2900	203	52	.	.	PUNCT
ajlm-2900	204	1	salmonella	salmonella	NOUN
ajlm-2900	204	2	infantis	infantis	NOUN
ajlm-2900	204	3	(	(	PUNCT
ajlm-2900	204	4	98/8006	98/8006	NUM
ajlm-2900	204	5	;	;	PUNCT
ajlm-2900	204	6	1.2	1.2	NUM
ajlm-2900	204	7	%	%	NOUN
ajlm-2900	204	8	)	)	PUNCT
ajlm-2900	204	9	was	be	AUX
ajlm-2900	204	10	our	our	PRON
ajlm-2900	204	11	eighth	eighth	ADJ
ajlm-2900	204	12	most	most	ADV
ajlm-2900	204	13	prevalent	prevalent	ADJ
ajlm-2900	204	14	salmonella	salmonella	NOUN
ajlm-2900	204	15	serovar	serovar	NOUN
ajlm-2900	204	16	or	or	CCONJ
ajlm-2900	204	17	subspecies	subspecie	NOUN
ajlm-2900	204	18	.	.	PUNCT
ajlm-2900	205	1	salmonella	salmonella	NOUN
ajlm-2900	205	2	infantis	infantis	PROPN
ajlm-2900	205	3	is	be	AUX
ajlm-2900	205	4	currently	currently	ADV
ajlm-2900	205	5	perhaps	perhaps	ADV
ajlm-2900	205	6	the	the	DET
ajlm-2900	205	7	biggest	big	ADJ
ajlm-2900	205	8	mover	mover	NOUN
ajlm-2900	205	9	and	and	CCONJ
ajlm-2900	205	10	shaker	shaker	NOUN
ajlm-2900	205	11	among	among	ADP
ajlm-2900	205	12	the	the	DET
ajlm-2900	205	13	global	global	ADJ
ajlm-2900	205	14	salmonella	salmonella	PROPN
ajlm-2900	205	15	population	population	NOUN
ajlm-2900	205	16	,	,	PUNCT
ajlm-2900	205	17	gaining	gain	VERB
ajlm-2900	205	18	increased	increase	VERB
ajlm-2900	205	19	global	global	ADJ
ajlm-2900	205	20	prevalence	prevalence	NOUN
ajlm-2900	205	21	over	over	ADP
ajlm-2900	205	22	recent	recent	ADJ
ajlm-2900	205	23	years.40	years.40	PROPN
ajlm-2900	205	24	salmonella	salmonella	PROPN
ajlm-2900	205	25	infantis	infantis	NOUN
ajlm-2900	205	26	has	have	AUX
ajlm-2900	205	27	become	become	VERB
ajlm-2900	205	28	the	the	DET
ajlm-2900	205	29	fourth	fourth	ADJ
ajlm-2900	205	30	most	most	ADV
ajlm-2900	205	31	prevalent	prevalent	ADJ
ajlm-2900	205	32	salmonella	salmonella	NOUN
ajlm-2900	205	33	serovar	serovar	NOUN
ajlm-2900	205	34	causing	cause	VERB
ajlm-2900	205	35	human	human	ADJ
ajlm-2900	205	36	infections	infection	NOUN
ajlm-2900	205	37	among	among	ADP
ajlm-2900	205	38	european	european	PROPN
ajlm-2900	205	39	union	union	PROPN
ajlm-2900	205	40	member	member	NOUN
ajlm-2900	205	41	countries.41	countries.41	PROPN
ajlm-2900	205	42	salmonella	salmonella	PROPN
ajlm-2900	205	43	infantis	infantis	NOUN
ajlm-2900	205	44	is	be	AUX
ajlm-2900	205	45	among	among	ADP
ajlm-2900	205	46	the	the	DET
ajlm-2900	205	47	most	most	ADV
ajlm-2900	205	48	frequently	frequently	ADV
ajlm-2900	205	49	isolated	isolate	VERB
ajlm-2900	205	50	salmonella	salmonella	NOUN
ajlm-2900	205	51	serovar	serovar	NOUN
ajlm-2900	205	52	in	in	ADP
ajlm-2900	205	53	poultry	poultry	NOUN
ajlm-2900	205	54	in	in	ADP
ajlm-2900	205	55	europe	europe	PROPN
ajlm-2900	205	56	and	and	CCONJ
ajlm-2900	205	57	the	the	DET
ajlm-2900	205	58	united	united	PROPN
ajlm-2900	205	59	states.41	states.41	PROPN
ajlm-2900	205	60	globally	globally	ADV
ajlm-2900	205	61	,	,	PUNCT
ajlm-2900	205	62	salmonella	salmonella	NOUN
ajlm-2900	205	63	infantis	infantis	NOUN
ajlm-2900	205	64	is	be	AUX
ajlm-2900	205	65	currently	currently	ADV
ajlm-2900	205	66	listed	list	VERB
ajlm-2900	205	67	as	as	ADP
ajlm-2900	205	68	the	the	DET
ajlm-2900	205	69	third	third	ADJ
ajlm-2900	205	70	most	most	ADV
ajlm-2900	205	71	prevalent	prevalent	ADJ
ajlm-2900	205	72	salmonella	salmonella	NOUN
ajlm-2900	205	73	serovar	serovar	NOUN
ajlm-2900	205	74	,	,	PUNCT
ajlm-2900	205	75	with	with	ADP
ajlm-2900	205	76	a	a	DET
ajlm-2900	205	77	global	global	ADJ
ajlm-2900	205	78	reported	report	VERB
ajlm-2900	205	79	salmonella	salmonella	NOUN
ajlm-2900	205	80	prevalence	prevalence	NOUN
ajlm-2900	205	81	of	of	ADP
ajlm-2900	205	82	6.6%.27	6.6%.27	NUM
ajlm-2900	205	83	interestingly	interestingly	ADV
ajlm-2900	205	84	,	,	PUNCT
ajlm-2900	205	85	the	the	DET
ajlm-2900	205	86	population	population	NOUN
ajlm-2900	205	87	structure	structure	NOUN
ajlm-2900	205	88	of	of	ADP
ajlm-2900	205	89	south	south	ADJ
ajlm-2900	205	90	african	african	ADJ
ajlm-2900	205	91	salmonella	salmonella	NOUN
ajlm-2900	205	92	infantis	infantis	NOUN
ajlm-2900	205	93	has	have	AUX
ajlm-2900	205	94	been	be	AUX
ajlm-2900	205	95	shown	show	VERB
ajlm-2900	205	96	to	to	PART
ajlm-2900	205	97	differ	differ	VERB
ajlm-2900	205	98	substantially	substantially	ADV
ajlm-2900	205	99	from	from	ADP
ajlm-2900	205	100	salmonella	salmonella	NOUN
ajlm-2900	205	101	infantis	infantis	NOUN
ajlm-2900	205	102	isolated	isolate	VERB
ajlm-2900	205	103	elsewhere	elsewhere	ADV
ajlm-2900	205	104	globally.42	globally.42	PROPN
ajlm-2900	205	105	conclusion	conclusion	NOUN
ajlm-2900	205	106	the	the	DET
ajlm-2900	205	107	implementation	implementation	NOUN
ajlm-2900	205	108	of	of	ADP
ajlm-2900	205	109	wgs	wgs	NOUN
ajlm-2900	205	110	for	for	ADP
ajlm-2900	205	111	routine	routine	ADJ
ajlm-2900	205	112	surveillance	surveillance	NOUN
ajlm-2900	205	113	of	of	ADP
ajlm-2900	205	114	clinical	clinical	ADJ
ajlm-2900	205	115	isolates	isolate	NOUN
ajlm-2900	205	116	of	of	ADP
ajlm-2900	205	117	salmonella	salmonella	NOUN
ajlm-2900	205	118	in	in	ADP
ajlm-2900	205	119	south	south	PROPN
ajlm-2900	205	120	africa	africa	PROPN
ajlm-2900	205	121	has	have	AUX
ajlm-2900	205	122	seen	see	VERB
ajlm-2900	205	123	a	a	DET
ajlm-2900	205	124	significant	significant	ADJ
ajlm-2900	205	125	increase	increase	NOUN
ajlm-2900	205	126	in	in	ADP
ajlm-2900	205	127	the	the	DET
ajlm-2900	205	128	critical	critical	ADJ
ajlm-2900	205	129	mass	mass	NOUN
ajlm-2900	205	130	of	of	ADP
ajlm-2900	205	131	salmonella	salmonella	NOUN
ajlm-2900	205	132	genomic	genomic	NOUN
ajlm-2900	205	133	data	datum	NOUN
ajlm-2900	205	134	now	now	ADV
ajlm-2900	205	135	available	available	ADJ
ajlm-2900	205	136	from	from	ADP
ajlm-2900	205	137	the	the	DET
ajlm-2900	205	138	african	african	ADJ
ajlm-2900	205	139	continent	continent	NOUN
ajlm-2900	205	140	.	.	PUNCT
ajlm-2900	206	1	south	south	PROPN
ajlm-2900	206	2	africa	africa	PROPN
ajlm-2900	206	3	is	be	AUX
ajlm-2900	206	4	currently	currently	ADV
ajlm-2900	206	5	ranked	rank	VERB
ajlm-2900	206	6	country	country	NOUN
ajlm-2900	206	7	number	number	NOUN
ajlm-2900	206	8	one	one	NUM
ajlm-2900	206	9	with	with	ADP
ajlm-2900	206	10	respect	respect	NOUN
ajlm-2900	206	11	to	to	ADP
ajlm-2900	206	12	the	the	DET
ajlm-2900	206	13	number	number	NOUN
ajlm-2900	206	14	of	of	ADP
ajlm-2900	206	15	salmonella	salmonella	NOUN
ajlm-2900	206	16	genome	genome	NOUN
ajlm-2900	206	17	submissions	submission	NOUN
ajlm-2900	206	18	from	from	ADP
ajlm-2900	206	19	africa	africa	PROPN
ajlm-2900	206	20	,	,	PUNCT
ajlm-2900	206	21	and	and	CCONJ
ajlm-2900	206	22	seventh	seventh	ADJ
ajlm-2900	206	23	with	with	ADP
ajlm-2900	206	24	respect	respect	NOUN
ajlm-2900	206	25	to	to	ADP
ajlm-2900	206	26	global	global	ADJ
ajlm-2900	206	27	country	country	NOUN
ajlm-2900	206	28	submissions	submission	NOUN
ajlm-2900	206	29	.	.	PUNCT
ajlm-2900	207	1	large	large	ADJ
ajlm-2900	207	2	wgs	wgs	NOUN
ajlm-2900	207	3	data	datum	NOUN
ajlm-2900	207	4	sets	set	NOUN
ajlm-2900	207	5	,	,	PUNCT
ajlm-2900	207	6	methodically	methodically	ADV
ajlm-2900	207	7	generated	generate	VERB
ajlm-2900	207	8	over	over	ADP
ajlm-2900	207	9	long	long	ADJ
ajlm-2900	207	10	time	time	NOUN
ajlm-2900	207	11	periods	period	NOUN
ajlm-2900	207	12	,	,	PUNCT
ajlm-2900	207	13	provide	provide	VERB
ajlm-2900	207	14	essential	essential	ADJ
ajlm-2900	207	15	information	information	NOUN
ajlm-2900	207	16	for	for	ADP
ajlm-2900	207	17	:	:	PUNCT
ajlm-2900	207	18	detailed	detailed	ADJ
ajlm-2900	207	19	and	and	CCONJ
ajlm-2900	207	20	enhanced	enhanced	ADJ
ajlm-2900	207	21	characterisation	characterisation	NOUN
ajlm-2900	207	22	of	of	ADP
ajlm-2900	207	23	bacterial	bacterial	ADJ
ajlm-2900	207	24	strains	strain	NOUN
ajlm-2900	207	25	(	(	PUNCT
ajlm-2900	207	26	pathogens	pathogen	NOUN
ajlm-2900	207	27	)	)	PUNCT
ajlm-2900	207	28	,	,	PUNCT
ajlm-2900	207	29	molecular	molecular	ADJ
ajlm-2900	207	30	epidemiological	epidemiological	ADJ
ajlm-2900	207	31	investigations	investigation	NOUN
ajlm-2900	207	32	,	,	PUNCT
ajlm-2900	207	33	early	early	ADJ
ajlm-2900	207	34	detection	detection	NOUN
ajlm-2900	207	35	of	of	ADP
ajlm-2900	207	36	clusters	cluster	NOUN
ajlm-2900	207	37	of	of	ADP
ajlm-2900	207	38	disease	disease	NOUN
ajlm-2900	207	39	,	,	PUNCT
ajlm-2900	207	40	outbreak	outbreak	NOUN
ajlm-2900	207	41	investigations	investigation	NOUN
ajlm-2900	207	42	,	,	PUNCT
ajlm-2900	207	43	investigating	investigate	VERB
ajlm-2900	207	44	for	for	ADP
ajlm-2900	207	45	new	new	ADJ
ajlm-2900	207	46	and	and	CCONJ
ajlm-2900	207	47	emerging	emerge	VERB
ajlm-2900	207	48	strains	strain	NOUN
ajlm-2900	207	49	,	,	PUNCT
ajlm-2900	207	50	investigating	investigate	VERB
ajlm-2900	207	51	for	for	ADP
ajlm-2900	207	52	new	new	ADJ
ajlm-2900	207	53	or	or	CCONJ
ajlm-2900	207	54	unusual	unusual	ADJ
ajlm-2900	207	55	amr	amr	ADJ
ajlm-2900	207	56	profiles	profile	NOUN
ajlm-2900	207	57	,	,	PUNCT
ajlm-2900	207	58	tracking	track	VERB
ajlm-2900	207	59	the	the	DET
ajlm-2900	207	60	spread	spread	NOUN
ajlm-2900	207	61	of	of	ADP
ajlm-2900	207	62	strains	strain	NOUN
ajlm-2900	207	63	,	,	PUNCT
ajlm-2900	207	64	data	datum	NOUN
ajlm-2900	207	65	for	for	ADP
ajlm-2900	207	66	development	development	NOUN
ajlm-2900	207	67	of	of	ADP
ajlm-2900	207	68	treatment	treatment	NOUN
ajlm-2900	207	69	strategies	strategy	NOUN
ajlm-2900	207	70	and	and	CCONJ
ajlm-2900	207	71	vaccine	vaccine	NOUN
ajlm-2900	207	72	development	development	NOUN
ajlm-2900	207	73	,	,	PUNCT
ajlm-2900	207	74	and	and	CCONJ
ajlm-2900	207	75	data	datum	NOUN
ajlm-2900	207	76	for	for	ADP
ajlm-2900	207	77	monitoring	monitor	VERB
ajlm-2900	207	78	the	the	DET
ajlm-2900	207	79	effect	effect	NOUN
ajlm-2900	207	80	of	of	ADP
ajlm-2900	207	81	treatment	treatment	NOUN
ajlm-2900	207	82	interventions	intervention	NOUN
ajlm-2900	207	83	and	and	CCONJ
ajlm-2900	207	84	vaccine	vaccine	NOUN
ajlm-2900	207	85	rollout	rollout	NOUN
ajlm-2900	207	86	.	.	PUNCT
ajlm-2900	208	1	whole	whole	ADJ
ajlm-2900	208	2	-	-	PUNCT
ajlm-2900	208	3	genome	genome	NOUN
ajlm-2900	208	4	sequencing	sequence	VERB
ajlm-2900	208	5	data	datum	NOUN
ajlm-2900	208	6	not	not	PART
ajlm-2900	208	7	only	only	ADV
ajlm-2900	208	8	provide	provide	VERB
ajlm-2900	208	9	value	value	NOUN
ajlm-2900	208	10	‘	'	PUNCT
ajlm-2900	208	11	in	in	ADP
ajlm-2900	208	12	the	the	DET
ajlm-2900	208	13	now	now	NOUN
ajlm-2900	208	14	’	'	PUNCT
ajlm-2900	208	15	but	but	CCONJ
ajlm-2900	208	16	are	be	AUX
ajlm-2900	208	17	‘	'	PUNCT
ajlm-2900	208	18	the	the	DET
ajlm-2900	208	19	gift	gift	NOUN
ajlm-2900	208	20	that	that	PRON
ajlm-2900	208	21	keeps	keep	VERB
ajlm-2900	208	22	on	on	ADP
ajlm-2900	208	23	giving	give	VERB
ajlm-2900	208	24	’	'	PUNCT
ajlm-2900	208	25	,	,	PUNCT
ajlm-2900	208	26	as	as	SCONJ
ajlm-2900	208	27	data	datum	NOUN
ajlm-2900	208	28	can	can	AUX
ajlm-2900	208	29	be	be	AUX
ajlm-2900	208	30	further	far	ADV
ajlm-2900	208	31	and	and	CCONJ
ajlm-2900	208	32	repeatedly	repeatedly	ADV
ajlm-2900	208	33	investigated	investigate	VERB
ajlm-2900	208	34	by	by	ADP
ajlm-2900	208	35	multiple	multiple	ADJ
ajlm-2900	208	36	parties	party	NOUN
ajlm-2900	208	37	,	,	PUNCT
ajlm-2900	208	38	be	be	AUX
ajlm-2900	208	39	that	that	SCONJ
ajlm-2900	208	40	for	for	ADP
ajlm-2900	208	41	research	research	NOUN
ajlm-2900	208	42	purposes	purpose	NOUN
ajlm-2900	208	43	or	or	CCONJ
ajlm-2900	208	44	public	public	ADJ
ajlm-2900	208	45	health	health	NOUN
ajlm-2900	208	46	activities	activity	NOUN
ajlm-2900	208	47	,	,	PUNCT
ajlm-2900	208	48	all	all	PRON
ajlm-2900	208	49	to	to	PART
ajlm-2900	208	50	assist	assist	VERB
ajlm-2900	208	51	with	with	ADP
ajlm-2900	208	52	investigation	investigation	NOUN
ajlm-2900	208	53	and	and	CCONJ
ajlm-2900	208	54	containment	containment	NOUN
ajlm-2900	208	55	of	of	ADP
ajlm-2900	208	56	future	future	ADJ
ajlm-2900	208	57	public	public	ADJ
ajlm-2900	208	58	health	health	NOUN
ajlm-2900	208	59	threats	threat	NOUN
ajlm-2900	208	60	.	.	PUNCT
ajlm-2900	209	1	acknowledgements	acknowledgement	NOUN
ajlm-2900	209	2	the	the	DET
ajlm-2900	209	3	authors	author	NOUN
ajlm-2900	209	4	would	would	AUX
ajlm-2900	209	5	like	like	VERB
ajlm-2900	209	6	to	to	PART
ajlm-2900	209	7	thank	thank	VERB
ajlm-2900	209	8	all	all	DET
ajlm-2900	209	9	participants	participant	NOUN
ajlm-2900	209	10	of	of	ADP
ajlm-2900	209	11	the	the	DET
ajlm-2900	209	12	nicd	nicd	PROPN
ajlm-2900	209	13	germs	germs	PROPN
ajlm-2900	209	14	-	-	PUNCT
ajlm-2900	209	15	sa	sa	PROPN
ajlm-2900	209	16	laboratory	laboratory	NOUN
ajlm-2900	209	17	surveillance	surveillance	NOUN
ajlm-2900	209	18	network	network	NOUN
ajlm-2900	209	19	for	for	ADP
ajlm-2900	209	20	submission	submission	NOUN
ajlm-2900	209	21	of	of	ADP
ajlm-2900	209	22	clinical	clinical	ADJ
ajlm-2900	209	23	isolates	isolate	NOUN
ajlm-2900	209	24	of	of	ADP
ajlm-2900	209	25	salmonella	salmonella	NOUN
ajlm-2900	209	26	species	specie	NOUN
ajlm-2900	209	27	to	to	ADP
ajlm-2900	209	28	the	the	DET
ajlm-2900	209	29	nicd	nicd	NOUN
ajlm-2900	209	30	.	.	PUNCT
ajlm-2900	210	1	competing	compete	VERB
ajlm-2900	210	2	interests	interest	NOUN
ajlm-2900	210	3	the	the	DET
ajlm-2900	210	4	authors	author	NOUN
ajlm-2900	210	5	declare	declare	VERB
ajlm-2900	210	6	that	that	SCONJ
ajlm-2900	210	7	they	they	PRON
ajlm-2900	210	8	have	have	VERB
ajlm-2900	210	9	no	no	DET
ajlm-2900	210	10	financial	financial	ADJ
ajlm-2900	210	11	or	or	CCONJ
ajlm-2900	210	12	personal	personal	ADJ
ajlm-2900	210	13	relationships	relationship	NOUN
ajlm-2900	210	14	that	that	PRON
ajlm-2900	210	15	may	may	AUX
ajlm-2900	210	16	have	have	AUX
ajlm-2900	210	17	inappropriately	inappropriately	ADV
ajlm-2900	210	18	influenced	influence	VERB
ajlm-2900	210	19	them	they	PRON
ajlm-2900	210	20	in	in	ADP
ajlm-2900	210	21	writing	write	VERB
ajlm-2900	210	22	this	this	DET
ajlm-2900	210	23	article	article	NOUN
ajlm-2900	210	24	.	.	PUNCT
ajlm-2900	211	1	authors	author	NOUN
ajlm-2900	211	2	’	’	PART
ajlm-2900	211	3	contributions	contribution	NOUN
ajlm-2900	211	4	a.m.s	a.m.s	PROPN
ajlm-2900	211	5	.	.	PUNCT
ajlm-2900	211	6	contributed	contribute	VERB
ajlm-2900	211	7	towards	towards	ADP
ajlm-2900	211	8	project	project	NOUN
ajlm-2900	211	9	conceptualisation	conceptualisation	NOUN
ajlm-2900	211	10	,	,	PUNCT
ajlm-2900	211	11	funding	funding	NOUN
ajlm-2900	211	12	acquisition	acquisition	NOUN
ajlm-2900	211	13	,	,	PUNCT
ajlm-2900	211	14	project	project	NOUN
ajlm-2900	211	15	administration	administration	NOUN
ajlm-2900	211	16	,	,	PUNCT
ajlm-2900	211	17	project	project	NOUN
ajlm-2900	211	18	supervision	supervision	NOUN
ajlm-2900	211	19	,	,	PUNCT
ajlm-2900	211	20	data	datum	NOUN
ajlm-2900	211	21	analysis	analysis	NOUN
ajlm-2900	211	22	,	,	PUNCT
ajlm-2900	211	23	data	data	NOUN
ajlm-2900	211	24	curation	curation	NOUN
ajlm-2900	211	25	,	,	PUNCT
ajlm-2900	211	26	writing	write	VERB
ajlm-2900	211	27	the	the	DET
ajlm-2900	211	28	original	original	ADJ
ajlm-2900	211	29	draft	draft	NOUN
ajlm-2900	211	30	of	of	ADP
ajlm-2900	211	31	the	the	DET
ajlm-2900	211	32	article	article	NOUN
ajlm-2900	211	33	,	,	PUNCT
ajlm-2900	211	34	and	and	CCONJ
ajlm-2900	211	35	is	be	AUX
ajlm-2900	211	36	the	the	DET
ajlm-2900	211	37	corresponding	corresponding	ADJ
ajlm-2900	211	38	author	author	NOUN
ajlm-2900	211	39	for	for	ADP
ajlm-2900	211	40	the	the	DET
ajlm-2900	211	41	project	project	NOUN
ajlm-2900	211	42	.	.	PUNCT
ajlm-2900	212	1	p.s	p.s	INTJ
ajlm-2900	212	2	.	.	PROPN
ajlm-2900	212	3	,	,	PUNCT
ajlm-2900	212	4	l.k.e	l.k.e	INTJ
ajlm-2900	212	5	.	.	PUNCT
ajlm-2900	212	6	,	,	PUNCT
ajlm-2900	212	7	and	and	CCONJ
ajlm-2900	212	8	j.t	j.t	PROPN
ajlm-2900	212	9	.	.	PROPN
ajlm-2900	212	10	contributed	contribute	VERB
ajlm-2900	212	11	towards	towards	ADP
ajlm-2900	212	12	data	datum	NOUN
ajlm-2900	212	13	analysis	analysis	NOUN
ajlm-2900	212	14	,	,	PUNCT
ajlm-2900	212	15	review	review	NOUN
ajlm-2900	212	16	,	,	PUNCT
ajlm-2900	212	17	and	and	CCONJ
ajlm-2900	212	18	editing	editing	NOUN
ajlm-2900	212	19	of	of	ADP
ajlm-2900	212	20	the	the	DET
ajlm-2900	212	21	article	article	NOUN
ajlm-2900	212	22	.	.	PUNCT
ajlm-2900	213	1	h.m.n	h.m.n	PROPN
ajlm-2900	213	2	.	.	PROPN
ajlm-2900	213	3	,	,	PUNCT
ajlm-2900	213	4	b.d	b.d	PROPN
ajlm-2900	213	5	.	.	PROPN
ajlm-2900	213	6	,	,	PUNCT
ajlm-2900	213	7	d.b	d.b	PROPN
ajlm-2900	213	8	.	.	PROPN
ajlm-2900	213	9	,	,	PUNCT
ajlm-2900	213	10	s.l.s	s.l.s	NOUN
ajlm-2900	213	11	.	.	NOUN
ajlm-2900	213	12	,	,	PUNCT
ajlm-2900	213	13	and	and	CCONJ
ajlm-2900	213	14	n.p.t	n.p.t	PROPN
ajlm-2900	213	15	.	.	PROPN
ajlm-2900	213	16	contributed	contribute	VERB
ajlm-2900	213	17	towards	towards	ADP
ajlm-2900	213	18	laboratory	laboratory	NOUN
ajlm-2900	213	19	analysis	analysis	NOUN
ajlm-2900	213	20	,	,	PUNCT
ajlm-2900	213	21	data	datum	NOUN
ajlm-2900	213	22	analysis	analysis	NOUN
ajlm-2900	213	23	,	,	PUNCT
ajlm-2900	213	24	data	data	NOUN
ajlm-2900	213	25	curation	curation	NOUN
ajlm-2900	213	26	,	,	PUNCT
ajlm-2900	213	27	review	review	NOUN
ajlm-2900	213	28	,	,	PUNCT
ajlm-2900	213	29	and	and	CCONJ
ajlm-2900	213	30	editing	editing	NOUN
ajlm-2900	213	31	of	of	ADP
ajlm-2900	213	32	the	the	DET
ajlm-2900	213	33	article	article	NOUN
ajlm-2900	213	34	.	.	PUNCT
ajlm-2900	214	1	funding	funding	NOUN
ajlm-2900	214	2	information	information	NOUN
ajlm-2900	214	3	this	this	DET
ajlm-2900	214	4	work	work	NOUN
ajlm-2900	214	5	was	be	AUX
ajlm-2900	214	6	supported	support	VERB
ajlm-2900	214	7	by	by	ADP
ajlm-2900	214	8	the	the	DET
ajlm-2900	214	9	seqafrica	seqafrica	PROPN
ajlm-2900	214	10	project	project	NOUN
ajlm-2900	214	11	which	which	PRON
ajlm-2900	214	12	is	be	AUX
ajlm-2900	214	13	funded	fund	VERB
ajlm-2900	214	14	by	by	ADP
ajlm-2900	214	15	the	the	DET
ajlm-2900	214	16	department	department	PROPN
ajlm-2900	214	17	of	of	ADP
ajlm-2900	214	18	health	health	PROPN
ajlm-2900	214	19	and	and	CCONJ
ajlm-2900	214	20	social	social	ADJ
ajlm-2900	214	21	care	care	PROPN
ajlm-2900	214	22	’s	’s	PART
ajlm-2900	214	23	fleming	fleming	PROPN
ajlm-2900	214	24	fund	fund	PROPN
ajlm-2900	214	25	using	use	VERB
ajlm-2900	214	26	united	united	PROPN
ajlm-2900	214	27	kingdom	kingdom	PROPN
ajlm-2900	214	28	aid	aid	NOUN
ajlm-2900	214	29	.	.	PUNCT
ajlm-2900	215	1	the	the	DET
ajlm-2900	215	2	views	view	NOUN
ajlm-2900	215	3	expressed	express	VERB
ajlm-2900	215	4	in	in	ADP
ajlm-2900	215	5	this	this	DET
ajlm-2900	215	6	publication	publication	NOUN
ajlm-2900	215	7	are	be	AUX
ajlm-2900	215	8	those	those	PRON
ajlm-2900	215	9	of	of	ADP
ajlm-2900	215	10	the	the	DET
ajlm-2900	215	11	authors	author	NOUN
ajlm-2900	215	12	and	and	CCONJ
ajlm-2900	215	13	not	not	PART
ajlm-2900	215	14	necessarily	necessarily	ADV
ajlm-2900	215	15	those	those	PRON
ajlm-2900	215	16	of	of	ADP
ajlm-2900	215	17	the	the	DET
ajlm-2900	215	18	united	united	PROPN
ajlm-2900	215	19	kingdom	kingdom	PROPN
ajlm-2900	215	20	department	department	PROPN
ajlm-2900	215	21	of	of	ADP
ajlm-2900	215	22	health	health	PROPN
ajlm-2900	215	23	and	and	CCONJ
ajlm-2900	215	24	social	social	ADJ
ajlm-2900	215	25	care	care	NOUN
ajlm-2900	215	26	or	or	CCONJ
ajlm-2900	215	27	its	its	PRON
ajlm-2900	215	28	management	management	NOUN
ajlm-2900	215	29	agent	agent	NOUN
ajlm-2900	215	30	,	,	PUNCT
ajlm-2900	215	31	mott	mott	PROPN
ajlm-2900	215	32	macdonald	macdonald	PROPN
ajlm-2900	215	33	.	.	PUNCT
ajlm-2900	216	1	data	datum	NOUN
ajlm-2900	216	2	availability	availability	NOUN
ajlm-2900	216	3	the	the	DET
ajlm-2900	216	4	data	datum	NOUN
ajlm-2900	216	5	that	that	PRON
ajlm-2900	216	6	support	support	VERB
ajlm-2900	216	7	the	the	DET
ajlm-2900	216	8	findings	finding	NOUN
ajlm-2900	216	9	of	of	ADP
ajlm-2900	216	10	this	this	DET
ajlm-2900	216	11	study	study	NOUN
ajlm-2900	216	12	are	be	AUX
ajlm-2900	216	13	uploaded	upload	VERB
ajlm-2900	216	14	to	to	ADP
ajlm-2900	216	15	the	the	DET
ajlm-2900	216	16	public	public	ADJ
ajlm-2900	216	17	enterobase	enterobase	NOUN
ajlm-2900	216	18	platform	platform	NOUN
ajlm-2900	216	19	(	(	PUNCT
ajlm-2900	216	20	http://enterobase.warwick.ac.uk/species/index/senterica	http://enterobase.warwick.ac.uk/species/index/senterica	PROPN
ajlm-2900	216	21	)	)	PUNCT
ajlm-2900	216	22	and	and	CCONJ
ajlm-2900	216	23	are	be	AUX
ajlm-2900	216	24	freely	freely	ADV
ajlm-2900	216	25	available	available	ADJ
ajlm-2900	216	26	at	at	ADP
ajlm-2900	216	27	this	this	DET
ajlm-2900	216	28	platform	platform	NOUN
ajlm-2900	216	29	.	.	PUNCT
ajlm-2900	217	1	in	in	ADP
ajlm-2900	217	2	addition	addition	NOUN
ajlm-2900	217	3	,	,	PUNCT
ajlm-2900	217	4	sequencing	sequence	VERB
ajlm-2900	217	5	data	datum	NOUN
ajlm-2900	217	6	are	be	AUX
ajlm-2900	217	7	deposited	deposit	VERB
ajlm-2900	217	8	in	in	ADP
ajlm-2900	217	9	the	the	DET
ajlm-2900	217	10	european	european	ADJ
ajlm-2900	217	11	nucleotide	nucleotide	NOUN
ajlm-2900	217	12	archive	archive	NOUN
ajlm-2900	217	13	under	under	ADP
ajlm-2900	217	14	the	the	DET
ajlm-2900	217	15	project	project	NOUN
ajlm-2900	217	16	accession	accession	NOUN
ajlm-2900	217	17	numbers	number	NOUN
ajlm-2900	217	18	prjeb39002	prjeb39002	PROPN
ajlm-2900	217	19	,	,	PUNCT
ajlm-2900	217	20	prjeb39546	prjeb39546	PROPN
ajlm-2900	217	21	and	and	CCONJ
ajlm-2900	217	22	prjeb39988	prjeb39988	PROPN
ajlm-2900	217	23	.	.	PUNCT
ajlm-2900	218	1	disclaimer	disclaimer	VERB
ajlm-2900	218	2	the	the	DET
ajlm-2900	218	3	views	view	NOUN
ajlm-2900	218	4	and	and	CCONJ
ajlm-2900	218	5	opinions	opinion	NOUN
ajlm-2900	218	6	expressed	express	VERB
ajlm-2900	218	7	in	in	ADP
ajlm-2900	218	8	this	this	DET
ajlm-2900	218	9	article	article	NOUN
ajlm-2900	218	10	are	be	AUX
ajlm-2900	218	11	those	those	PRON
ajlm-2900	218	12	of	of	ADP
ajlm-2900	218	13	the	the	DET
ajlm-2900	218	14	authors	author	NOUN
ajlm-2900	218	15	and	and	CCONJ
ajlm-2900	218	16	are	be	AUX
ajlm-2900	218	17	the	the	DET
ajlm-2900	218	18	product	product	NOUN
ajlm-2900	218	19	of	of	ADP
ajlm-2900	218	20	professional	professional	ADJ
ajlm-2900	218	21	research	research	NOUN
ajlm-2900	218	22	.	.	PUNCT
ajlm-2900	219	1	the	the	DET
ajlm-2900	219	2	article	article	NOUN
ajlm-2900	219	3	does	do	AUX
ajlm-2900	219	4	not	not	PART
ajlm-2900	219	5	necessarily	necessarily	ADV
ajlm-2900	219	6	reflect	reflect	VERB
ajlm-2900	219	7	the	the	DET
ajlm-2900	219	8	official	official	ADJ
ajlm-2900	219	9	policy	policy	NOUN
ajlm-2900	219	10	or	or	CCONJ
ajlm-2900	219	11	position	position	NOUN
ajlm-2900	219	12	of	of	ADP
ajlm-2900	219	13	any	any	DET
ajlm-2900	219	14	affiliated	affiliated	ADJ
ajlm-2900	219	15	institution	institution	NOUN
ajlm-2900	219	16	,	,	PUNCT
ajlm-2900	219	17	funder	funder	NOUN
ajlm-2900	219	18	,	,	PUNCT
ajlm-2900	219	19	agency	agency	NOUN
ajlm-2900	219	20	,	,	PUNCT
ajlm-2900	219	21	or	or	CCONJ
ajlm-2900	219	22	that	that	PRON
ajlm-2900	219	23	of	of	ADP
ajlm-2900	219	24	the	the	DET
ajlm-2900	219	25	publisher	publisher	NOUN
ajlm-2900	219	26	.	.	PUNCT
ajlm-2900	220	1	the	the	DET
ajlm-2900	220	2	authors	author	NOUN
ajlm-2900	220	3	are	be	AUX
ajlm-2900	220	4	responsible	responsible	ADJ
ajlm-2900	220	5	for	for	ADP
ajlm-2900	220	6	this	this	DET
ajlm-2900	220	7	article	article	NOUN
ajlm-2900	220	8	’s	’s	PART
ajlm-2900	220	9	results	result	NOUN
ajlm-2900	220	10	,	,	PUNCT
ajlm-2900	220	11	findings	finding	NOUN
ajlm-2900	220	12	,	,	PUNCT
ajlm-2900	220	13	and	and	CCONJ
ajlm-2900	220	14	content	content	NOUN
ajlm-2900	220	15	.	.	PUNCT
ajlm-2900	221	1	references	reference	NOUN
ajlm-2900	221	2	smith	smith	PROPN
ajlm-2900	221	3	si	si	PROPN
ajlm-2900	221	4	,	,	PUNCT
ajlm-2900	221	5	seriki	seriki	PROPN
ajlm-2900	221	6	a	a	X
ajlm-2900	221	7	,	,	PUNCT
ajlm-2900	221	8	ajayi	ajayi	NOUN
ajlm-2900	221	9	a.	a.	NOUN
ajlm-2900	221	10	typhoidal	typhoidal	NOUN
ajlm-2900	221	11	and	and	CCONJ
ajlm-2900	221	12	non	non	ADJ
ajlm-2900	221	13	-	-	ADJ
ajlm-2900	221	14	typhoidal	typhoidal	ADJ
ajlm-2900	221	15	salmonella	salmonella	NOUN
ajlm-2900	221	16	infections	infection	NOUN
ajlm-2900	221	17	in	in	ADP
ajlm-2900	221	18	africa	africa	PROPN
ajlm-2900	221	19	.	.	PUNCT
ajlm-2900	222	1	eur	eur	PROPN
ajlm-2900	222	2	j	j	PROPN
ajlm-2900	222	3	clin	clin	PROPN
ajlm-2900	222	4	microbiol	microbiol	PROPN
ajlm-2900	222	5	infect	infect	VERB
ajlm-2900	222	6	dis	dis	PROPN
ajlm-2900	222	7	.	.	PUNCT
ajlm-2900	223	1	2016;35(12):1913–1922	2016;35(12):1913–1922	NUM
ajlm-2900	223	2	.	.	PUNCT
ajlm-2900	223	3	https://doi.org/10.1007/s10096-016-2760-3	https://doi.org/10.1007/s10096-016-2760-3	PROPN
ajlm-2900	223	4	martin	martin	PROPN
ajlm-2900	223	5	lb	lb	NOUN
ajlm-2900	223	6	,	,	PUNCT
ajlm-2900	223	7	tack	tack	NOUN
ajlm-2900	223	8	b	b	NOUN
ajlm-2900	223	9	,	,	PUNCT
ajlm-2900	223	10	marchello	marchello	PROPN
ajlm-2900	223	11	cs	cs	PROPN
ajlm-2900	223	12	,	,	PUNCT
ajlm-2900	223	13	et	et	PROPN
ajlm-2900	223	14	al	al	PROPN
ajlm-2900	223	15	.	.	PROPN
ajlm-2900	224	1	vaccine	vaccine	NOUN
ajlm-2900	224	2	value	value	NOUN
ajlm-2900	224	3	profile	profile	NOUN
ajlm-2900	224	4	for	for	ADP
ajlm-2900	224	5	invasive	invasive	ADJ
ajlm-2900	224	6	non	non	ADJ
ajlm-2900	224	7	-	-	ADJ
ajlm-2900	224	8	typhoidal	typhoidal	ADJ
ajlm-2900	224	9	salmonella	salmonella	NOUN
ajlm-2900	224	10	disease	disease	NOUN
ajlm-2900	224	11	.	.	PUNCT
ajlm-2900	225	1	vaccine	vaccine	NOUN
ajlm-2900	225	2	.	.	PUNCT
ajlm-2900	226	1	2024;42(19	2024;42(19	NUM
ajlm-2900	226	2	suppl	suppl	ADJ
ajlm-2900	226	3	1):s101	1):s101	NUM
ajlm-2900	226	4	–	–	PUNCT
ajlm-2900	226	5	s124	s124	PROPN
ajlm-2900	226	6	.	.	PUNCT
ajlm-2900	227	1	https://doi.org/10.1016/j.vaccine.2024.04.045	https://doi.org/10.1016/j.vaccine.2024.04.045	PROPN
ajlm-2900	227	2	crump	crump	PROPN
ajlm-2900	227	3	ja	ja	PROPN
ajlm-2900	227	4	,	,	PUNCT
ajlm-2900	227	5	nyirenda	nyirenda	PROPN
ajlm-2900	227	6	ts	ts	PROPN
ajlm-2900	227	7	,	,	PUNCT
ajlm-2900	227	8	kalonji	kalonji	X
ajlm-2900	227	9	lm	lm	PROPN
ajlm-2900	227	10	,	,	PUNCT
ajlm-2900	227	11	et	et	PROPN
ajlm-2900	227	12	al	al	PROPN
ajlm-2900	227	13	.	.	PUNCT
ajlm-2900	228	1	nontyphoidal	nontyphoidal	ADJ
ajlm-2900	228	2	salmonella	salmonella	PROPN
ajlm-2900	228	3	invasive	invasive	ADJ
ajlm-2900	228	4	disease	disease	NOUN
ajlm-2900	228	5	:	:	PUNCT
ajlm-2900	228	6	challenges	challenge	NOUN
ajlm-2900	228	7	and	and	CCONJ
ajlm-2900	228	8	solutions	solution	NOUN
ajlm-2900	228	9	.	.	PUNCT
ajlm-2900	229	1	open	open	ADJ
ajlm-2900	229	2	forum	forum	PROPN
ajlm-2900	229	3	infect	infect	VERB
ajlm-2900	229	4	dis	dis	PROPN
ajlm-2900	229	5	.	.	PUNCT
ajlm-2900	230	1	2023;10(suppl	2023;10(suppl	PROPN
ajlm-2900	230	2	1	1	NUM
ajlm-2900	230	3	):	):	PUNCT
ajlm-2900	230	4	s32	s32	PROPN
ajlm-2900	230	5	–	–	PUNCT
ajlm-2900	230	6	s37	s37	NOUN
ajlm-2900	230	7	.	.	PUNCT
ajlm-2900	231	1	https://doi.org/10.1093/ofid/ofad020	https://doi.org/10.1093/ofid/ofad020	VERB
ajlm-2900	231	2	crump	crump	PROPN
ajlm-2900	231	3	ja	ja	PROPN
ajlm-2900	231	4	,	,	PUNCT
ajlm-2900	231	5	sjolund	sjolund	NOUN
ajlm-2900	231	6	-	-	PUNCT
ajlm-2900	231	7	karlsson	karlsson	PROPN
ajlm-2900	231	8	m	m	PROPN
ajlm-2900	231	9	,	,	PUNCT
ajlm-2900	231	10	gordon	gordon	PROPN
ajlm-2900	231	11	ma	ma	PROPN
ajlm-2900	231	12	,	,	PUNCT
ajlm-2900	231	13	parry	parry	VERB
ajlm-2900	231	14	cm	cm	PROPN
ajlm-2900	231	15	.	.	PUNCT
ajlm-2900	232	1	epidemiology	epidemiology	NOUN
ajlm-2900	232	2	,	,	PUNCT
ajlm-2900	232	3	clinical	clinical	ADJ
ajlm-2900	232	4	presentation	presentation	NOUN
ajlm-2900	232	5	,	,	PUNCT
ajlm-2900	232	6	laboratory	laboratory	NOUN
ajlm-2900	232	7	diagnosis	diagnosis	NOUN
ajlm-2900	232	8	,	,	PUNCT
ajlm-2900	232	9	antimicrobial	antimicrobial	ADJ
ajlm-2900	232	10	resistance	resistance	NOUN
ajlm-2900	232	11	,	,	PUNCT
ajlm-2900	232	12	and	and	CCONJ
ajlm-2900	232	13	antimicrobial	antimicrobial	ADJ
ajlm-2900	232	14	management	management	NOUN
ajlm-2900	232	15	of	of	ADP
ajlm-2900	232	16	invasive	invasive	ADJ
ajlm-2900	232	17	salmonella	salmonella	NOUN
ajlm-2900	232	18	infections	infection	NOUN
ajlm-2900	232	19	.	.	PUNCT
ajlm-2900	233	1	clin	clin	PROPN
ajlm-2900	233	2	microbiol	microbiol	PROPN
ajlm-2900	233	3	rev	rev	VERB
ajlm-2900	233	4	.	.	PROPN
ajlm-2900	233	5	2015;28(4):901–937	2015;28(4):901–937	NUM
ajlm-2900	233	6	.	.	PUNCT
ajlm-2900	234	1	https://doi.org/10.1128/cmr.00002-15	https://doi.org/10.1128/cmr.00002-15	PROPN
ajlm-2900	234	2	chattaway	chattaway	PROPN
ajlm-2900	234	3	ma	ma	PROPN
ajlm-2900	234	4	,	,	PUNCT
ajlm-2900	234	5	dallman	dallman	PROPN
ajlm-2900	234	6	tj	tj	PROPN
ajlm-2900	234	7	,	,	PUNCT
ajlm-2900	234	8	larkin	larkin	PROPN
ajlm-2900	234	9	l	l	PROPN
ajlm-2900	234	10	,	,	PUNCT
ajlm-2900	234	11	et	et	PROPN
ajlm-2900	234	12	al	al	PROPN
ajlm-2900	234	13	.	.	PUNCT
ajlm-2900	235	1	the	the	DET
ajlm-2900	235	2	transformation	transformation	NOUN
ajlm-2900	235	3	of	of	ADP
ajlm-2900	235	4	reference	reference	NOUN
ajlm-2900	235	5	microbiology	microbiology	NOUN
ajlm-2900	235	6	methods	method	NOUN
ajlm-2900	235	7	and	and	CCONJ
ajlm-2900	235	8	surveillance	surveillance	NOUN
ajlm-2900	235	9	for	for	ADP
ajlm-2900	235	10	salmonella	salmonella	NOUN
ajlm-2900	235	11	with	with	ADP
ajlm-2900	235	12	the	the	DET
ajlm-2900	235	13	use	use	NOUN
ajlm-2900	235	14	of	of	ADP
ajlm-2900	235	15	whole	whole	ADJ
ajlm-2900	235	16	genome	genome	NOUN
ajlm-2900	235	17	sequencing	sequencing	NOUN
ajlm-2900	235	18	in	in	ADP
ajlm-2900	235	19	england	england	PROPN
ajlm-2900	235	20	and	and	CCONJ
ajlm-2900	235	21	wales	wales	PROPN
ajlm-2900	235	22	.	.	PUNCT
ajlm-2900	236	1	front	front	ADJ
ajlm-2900	236	2	public	public	ADJ
ajlm-2900	236	3	health	health	NOUN
ajlm-2900	236	4	.	.	PUNCT
ajlm-2900	237	1	2019;7:317	2019;7:317	X
ajlm-2900	237	2	.	.	PUNCT
ajlm-2900	238	1	https://doi.org/10.3389/fpubh.2019.00317	https://doi.org/10.3389/fpubh.2019.00317	ADP
ajlm-2900	238	2	morton	morton	PROPN
ajlm-2900	238	3	v	v	PROPN
ajlm-2900	238	4	,	,	PUNCT
ajlm-2900	238	5	kandar	kandar	PROPN
ajlm-2900	238	6	r	r	PROPN
ajlm-2900	238	7	,	,	PUNCT
ajlm-2900	238	8	kearney	kearney	PROPN
ajlm-2900	238	9	a	a	PROPN
ajlm-2900	238	10	,	,	PUNCT
ajlm-2900	238	11	hamel	hamel	PROPN
ajlm-2900	238	12	m	m	PROPN
ajlm-2900	238	13	,	,	PUNCT
ajlm-2900	238	14	nadon	nadon	PROPN
ajlm-2900	238	15	c.	c.	PROPN
ajlm-2900	238	16	transition	transition	NOUN
ajlm-2900	238	17	to	to	ADP
ajlm-2900	238	18	whole	whole	ADJ
ajlm-2900	238	19	genome	genome	NOUN
ajlm-2900	238	20	sequencing	sequence	VERB
ajlm-2900	238	21	surveillance	surveillance	NOUN
ajlm-2900	238	22	:	:	PUNCT
ajlm-2900	238	23	the	the	DET
ajlm-2900	238	24	impact	impact	NOUN
ajlm-2900	238	25	on	on	ADP
ajlm-2900	238	26	national	national	ADJ
ajlm-2900	238	27	outbreak	outbreak	NOUN
ajlm-2900	238	28	detection	detection	NOUN
ajlm-2900	238	29	and	and	CCONJ
ajlm-2900	238	30	response	response	NOUN
ajlm-2900	238	31	for	for	ADP
ajlm-2900	238	32	listeria	listeria	NOUN
ajlm-2900	238	33	monocytogenes	monocytogene	NOUN
ajlm-2900	238	34	,	,	PUNCT
ajlm-2900	238	35	salmonella	salmonella	NOUN
ajlm-2900	238	36	,	,	PUNCT
ajlm-2900	238	37	shiga	shiga	ADJ
ajlm-2900	238	38	toxin	toxin	NOUN
ajlm-2900	238	39	-	-	PUNCT
ajlm-2900	238	40	producing	produce	VERB
ajlm-2900	238	41	escherichia	escherichia	NOUN
ajlm-2900	238	42	coli	coli	NOUN
ajlm-2900	238	43	,	,	PUNCT
ajlm-2900	238	44	and	and	CCONJ
ajlm-2900	238	45	shigella	shigella	PROPN
ajlm-2900	238	46	clusters	cluster	NOUN
ajlm-2900	238	47	in	in	ADP
ajlm-2900	238	48	canada	canada	PROPN
ajlm-2900	238	49	,	,	PUNCT
ajlm-2900	238	50	2015–2021	2015–2021	NUM
ajlm-2900	238	51	.	.	PUNCT
ajlm-2900	239	1	foodborne	foodborne	PROPN
ajlm-2900	239	2	pathog	pathog	PROPN
ajlm-2900	239	3	dis	dis	PROPN
ajlm-2900	239	4	.	.	PUNCT
ajlm-2900	240	1	2024;21(11):689–697	2024;21(11):689–697	X
ajlm-2900	240	2	.	.	PUNCT
ajlm-2900	240	3	https://doi.org/10.1089/fpd.2024.0041	https://doi.org/10.1089/fpd.2024.0041	PROPN
ajlm-2900	240	4	leeper	leeper	PROPN
ajlm-2900	240	5	mm	mm	PROPN
ajlm-2900	240	6	,	,	PUNCT
ajlm-2900	240	7	tolar	tolar	PROPN
ajlm-2900	240	8	bm	bm	PROPN
ajlm-2900	240	9	,	,	PUNCT
ajlm-2900	240	10	griswold	griswold	PROPN
ajlm-2900	240	11	t	t	PROPN
ajlm-2900	240	12	,	,	PUNCT
ajlm-2900	240	13	et	et	PROPN
ajlm-2900	240	14	al	al	PROPN
ajlm-2900	240	15	.	.	PUNCT
ajlm-2900	240	16	evaluation	evaluation	NOUN
ajlm-2900	240	17	of	of	ADP
ajlm-2900	240	18	whole	whole	ADJ
ajlm-2900	240	19	and	and	CCONJ
ajlm-2900	240	20	core	core	NOUN
ajlm-2900	240	21	genome	genome	NOUN
ajlm-2900	240	22	multilocus	multilocus	NOUN
ajlm-2900	240	23	sequence	sequence	NOUN
ajlm-2900	240	24	typing	type	VERB
ajlm-2900	240	25	allele	allele	NOUN
ajlm-2900	240	26	schemes	scheme	NOUN
ajlm-2900	240	27	for	for	ADP
ajlm-2900	240	28	salmonella	salmonella	PROPN
ajlm-2900	240	29	enterica	enterica	PROPN
ajlm-2900	240	30	outbreak	outbreak	PROPN
ajlm-2900	240	31	detection	detection	NOUN
ajlm-2900	240	32	in	in	ADP
ajlm-2900	240	33	a	a	DET
ajlm-2900	240	34	national	national	ADJ
ajlm-2900	240	35	surveillance	surveillance	NOUN
ajlm-2900	240	36	network	network	NOUN
ajlm-2900	240	37	,	,	PUNCT
ajlm-2900	240	38	pulsenet	pulsenet	PROPN
ajlm-2900	240	39	usa	usa	PROPN
ajlm-2900	240	40	.	.	PROPN
ajlm-2900	240	41	front	front	PROPN
ajlm-2900	240	42	microbiol	microbiol	PROPN
ajlm-2900	240	43	.	.	PUNCT
ajlm-2900	241	1	2023;14:1254777	2023;14:1254777	NUM
ajlm-2900	241	2	.	.	PUNCT
ajlm-2900	242	1	https://doi.org/10.3389/fmicb.2023.1254777	https://doi.org/10.3389/fmicb.2023.1254777	PROPN
ajlm-2900	242	2	world	world	NOUN
ajlm-2900	242	3	health	health	NOUN
ajlm-2900	242	4	organization	organization	NOUN
ajlm-2900	242	5	.	.	PUNCT
ajlm-2900	243	1	whole	whole	ADJ
ajlm-2900	243	2	genome	genome	NOUN
ajlm-2900	243	3	sequencing	sequencing	NOUN
ajlm-2900	243	4	for	for	ADP
ajlm-2900	243	5	foodborne	foodborne	ADJ
ajlm-2900	243	6	disease	disease	NOUN
ajlm-2900	243	7	surveillance	surveillance	NOUN
ajlm-2900	243	8	:	:	PUNCT
ajlm-2900	243	9	landscape	landscape	NOUN
ajlm-2900	243	10	paper	paper	NOUN
ajlm-2900	244	1	[	[	X
ajlm-2900	244	2	homepage	homepage	NOUN
ajlm-2900	244	3	on	on	ADP
ajlm-2900	244	4	the	the	DET
ajlm-2900	244	5	internet	internet	NOUN
ajlm-2900	244	6	]	]	PUNCT
ajlm-2900	244	7	.	.	PUNCT
ajlm-2900	244	8	2018	2018	NUM
ajlm-2900	245	1	[	[	X
ajlm-2900	245	2	cited	cite	VERB
ajlm-2900	245	3	2024	2024	NUM
ajlm-2900	245	4	dec	dec	PROPN
ajlm-2900	245	5	11	11	NUM
ajlm-2900	245	6	]	]	PUNCT
ajlm-2900	245	7	.	.	PUNCT
ajlm-2900	246	1	available	available	ADJ
ajlm-2900	246	2	from	from	ADP
ajlm-2900	246	3	:	:	PUNCT
ajlm-2900	246	4	https://www.who.int/publications/i/item/789241513869	https://www.who.int/publications/i/item/789241513869	PROPN
ajlm-2900	246	5	world	world	PROPN
ajlm-2900	246	6	health	health	PROPN
ajlm-2900	246	7	organization	organization	PROPN
ajlm-2900	246	8	.	.	PUNCT
ajlm-2900	247	1	global	global	ADJ
ajlm-2900	247	2	genomic	genomic	NOUN
ajlm-2900	247	3	surveillance	surveillance	NOUN
ajlm-2900	247	4	strategy	strategy	NOUN
ajlm-2900	247	5	for	for	ADP
ajlm-2900	247	6	pathogens	pathogen	NOUN
ajlm-2900	247	7	with	with	ADP
ajlm-2900	247	8	pandemic	pandemic	ADJ
ajlm-2900	247	9	and	and	CCONJ
ajlm-2900	247	10	epidemic	epidemic	NOUN
ajlm-2900	247	11	potential	potential	NOUN
ajlm-2900	247	12	,	,	PUNCT
ajlm-2900	247	13	2022–2032	2022–2032	NUM
ajlm-2900	248	1	[	[	X
ajlm-2900	248	2	homepage	homepage	NOUN
ajlm-2900	248	3	on	on	ADP
ajlm-2900	248	4	the	the	DET
ajlm-2900	248	5	internet	internet	NOUN
ajlm-2900	248	6	]	]	PUNCT
ajlm-2900	248	7	.	.	PUNCT
ajlm-2900	249	1	2022	2022	NUM
ajlm-2900	250	1	[	[	X
ajlm-2900	250	2	cited	cite	VERB
ajlm-2900	250	3	2024	2024	NUM
ajlm-2900	250	4	dec	dec	PROPN
ajlm-2900	250	5	11	11	NUM
ajlm-2900	250	6	]	]	PUNCT
ajlm-2900	250	7	.	.	PUNCT
ajlm-2900	251	1	available	available	ADJ
ajlm-2900	251	2	from	from	ADP
ajlm-2900	251	3	:	:	PUNCT
ajlm-2900	251	4	https://www.who.int/publications/i/item/9789240046979	https://www.who.int/publications/i/item/9789240046979	VERB
ajlm-2900	251	5	public	public	ADJ
ajlm-2900	251	6	health	health	NOUN
ajlm-2900	251	7	bulletin	bulletin	PROPN
ajlm-2900	251	8	south	south	PROPN
ajlm-2900	251	9	africa	africa	PROPN
ajlm-2900	251	10	.	.	PUNCT
ajlm-2900	252	1	unlocking	unlock	VERB
ajlm-2900	252	2	insights	insight	NOUN
ajlm-2900	252	3	:	:	PUNCT
ajlm-2900	252	4	key	key	ADJ
ajlm-2900	252	5	findings	finding	NOUN
ajlm-2900	252	6	from	from	ADP
ajlm-2900	252	7	germs	germ	NOUN
ajlm-2900	252	8	-	-	PUNCT
ajlm-2900	252	9	sa	sa	NOUN
ajlm-2900	252	10	annual	annual	ADJ
ajlm-2900	252	11	surveillance	surveillance	NOUN
ajlm-2900	252	12	review	review	NOUN
ajlm-2900	252	13	2022	2022	NUM
ajlm-2900	252	14	[	[	X
ajlm-2900	252	15	homepage	homepage	NOUN
ajlm-2900	252	16	on	on	ADP
ajlm-2900	252	17	the	the	DET
ajlm-2900	252	18	internet	internet	NOUN
ajlm-2900	252	19	]	]	PUNCT
ajlm-2900	252	20	.	.	PUNCT
ajlm-2900	252	21	2022	2022	NUM
ajlm-2900	253	1	[	[	X
ajlm-2900	253	2	cited	cite	VERB
ajlm-2900	253	3	2024	2024	NUM
ajlm-2900	253	4	oct	oct	NOUN
ajlm-2900	253	5	28	28	NUM
ajlm-2900	253	6	]	]	PUNCT
ajlm-2900	253	7	.	.	PUNCT
ajlm-2900	254	1	available	available	ADJ
ajlm-2900	254	2	from	from	ADP
ajlm-2900	254	3	:	:	PUNCT
ajlm-2900	254	4	https://www.phbsa.ac.za/key-findings-from-germs-surveillance-review-2022/	https://www.phbsa.ac.za/key-findings-from-germs-surveillance-review-2022/	PROPN
ajlm-2900	254	5	national	national	PROPN
ajlm-2900	254	6	institute	institute	PROPN
ajlm-2900	254	7	of	of	ADP
ajlm-2900	254	8	communicable	communicable	NOUN
ajlm-2900	254	9	diseases	disease	NOUN
ajlm-2900	254	10	.	.	PUNCT
ajlm-2900	255	1	overview	overview	NOUN
ajlm-2900	255	2	[	[	X
ajlm-2900	255	3	homepage	homepage	NOUN
ajlm-2900	255	4	on	on	ADP
ajlm-2900	255	5	the	the	DET
ajlm-2900	255	6	internet	internet	NOUN
ajlm-2900	255	7	]	]	PUNCT
ajlm-2900	255	8	.	.	PUNCT
ajlm-2900	256	1	2023	2023	NUM
ajlm-2900	257	1	[	[	X
ajlm-2900	257	2	cited	cite	VERB
ajlm-2900	257	3	2024	2024	NUM
ajlm-2900	257	4	dec	dec	PROPN
ajlm-2900	257	5	11	11	NUM
ajlm-2900	257	6	]	]	PUNCT
ajlm-2900	257	7	.	.	PUNCT
ajlm-2900	258	1	available	available	ADJ
ajlm-2900	258	2	from	from	ADP
ajlm-2900	258	3	:	:	PUNCT
ajlm-2900	258	4	https://www.nicd.ac.za/nmc-overview/overview/	https://www.nicd.ac.za/nmc-overview/overview/	PROPN
ajlm-2900	258	5	dyer	dyer	NOUN
ajlm-2900	258	6	np	np	NOUN
ajlm-2900	258	7	,	,	PUNCT
ajlm-2900	258	8	päuker	päuker	NOUN
ajlm-2900	258	9	b	b	NOUN
ajlm-2900	258	10	,	,	PUNCT
ajlm-2900	258	11	baxter	baxter	PROPN
ajlm-2900	258	12	l	l	PROPN
ajlm-2900	258	13	,	,	PUNCT
ajlm-2900	258	14	et	et	PROPN
ajlm-2900	258	15	al	al	PROPN
ajlm-2900	258	16	.	.	PROPN
ajlm-2900	258	17	enterobase	enterobase	PROPN
ajlm-2900	258	18	in	in	ADP
ajlm-2900	258	19	2025	2025	NUM
ajlm-2900	258	20	:	:	PUNCT
ajlm-2900	258	21	exploring	explore	VERB
ajlm-2900	258	22	the	the	DET
ajlm-2900	258	23	genomic	genomic	ADJ
ajlm-2900	258	24	epidemiology	epidemiology	NOUN
ajlm-2900	258	25	of	of	ADP
ajlm-2900	258	26	bacterial	bacterial	ADJ
ajlm-2900	258	27	pathogens	pathogen	NOUN
ajlm-2900	258	28	.	.	PUNCT
ajlm-2900	259	1	nucleic	nucleic	ADJ
ajlm-2900	259	2	acids	acid	NOUN
ajlm-2900	259	3	res	re	NOUN
ajlm-2900	259	4	.	.	PUNCT
ajlm-2900	260	1	2025;53(d1):d757	2025;53(d1):d757	NOUN
ajlm-2900	260	2	–	–	PUNCT
ajlm-2900	260	3	d762	d762	PROPN
ajlm-2900	260	4	.	.	PUNCT
ajlm-2900	261	1	https://doi.org/10.1093/nar/gkae902	https://doi.org/10.1093/nar/gkae902	VERB
ajlm-2900	261	2	smith	smith	PROPN
ajlm-2900	261	3	am	be	AUX
ajlm-2900	261	4	,	,	PUNCT
ajlm-2900	261	5	mthanti	mthanti	PROPN
ajlm-2900	261	6	ma	ma	PROPN
ajlm-2900	261	7	,	,	PUNCT
ajlm-2900	261	8	haumann	haumann	PROPN
ajlm-2900	261	9	c	c	X
ajlm-2900	261	10	,	,	PUNCT
ajlm-2900	261	11	et	et	PROPN
ajlm-2900	261	12	al	al	PROPN
ajlm-2900	261	13	.	.	PUNCT
ajlm-2900	262	1	nosocomial	nosocomial	ADJ
ajlm-2900	262	2	outbreak	outbreak	NOUN
ajlm-2900	262	3	of	of	ADP
ajlm-2900	262	4	salmonella	salmonella	PROPN
ajlm-2900	262	5	enterica	enterica	PROPN
ajlm-2900	262	6	serovar	serovar	PROPN
ajlm-2900	262	7	typhimurium	typhimurium	NOUN
ajlm-2900	262	8	primarily	primarily	ADV
ajlm-2900	262	9	affecting	affect	VERB
ajlm-2900	262	10	a	a	DET
ajlm-2900	262	11	pediatric	pediatric	ADJ
ajlm-2900	262	12	ward	ward	NOUN
ajlm-2900	262	13	in	in	ADP
ajlm-2900	262	14	south	south	PROPN
ajlm-2900	262	15	africa	africa	PROPN
ajlm-2900	262	16	in	in	ADP
ajlm-2900	262	17	2012	2012	NUM
ajlm-2900	262	18	.	.	PUNCT
ajlm-2900	263	1	j	j	PROPN
ajlm-2900	263	2	clin	clin	PROPN
ajlm-2900	263	3	microbiol	microbiol	PROPN
ajlm-2900	263	4	.	.	PUNCT
ajlm-2900	264	1	2014;52(2):627–631	2014;52(2):627–631	X
ajlm-2900	264	2	.	.	PUNCT
ajlm-2900	265	1	https://doi.org/10.1128/jcm.02422-13	https://doi.org/10.1128/jcm.02422-13	PROPN
ajlm-2900	265	2	smith	smith	PROPN
ajlm-2900	265	3	am	be	AUX
ajlm-2900	265	4	,	,	PUNCT
ajlm-2900	265	5	smouse	smouse	NOUN
ajlm-2900	265	6	sl	sl	PROPN
ajlm-2900	265	7	,	,	PUNCT
ajlm-2900	265	8	tau	tau	PROPN
ajlm-2900	265	9	np	np	INTJ
ajlm-2900	265	10	,	,	PUNCT
ajlm-2900	265	11	et	et	PROPN
ajlm-2900	265	12	al	al	PROPN
ajlm-2900	265	13	.	.	PUNCT
ajlm-2900	265	14	laboratory	laboratory	NOUN
ajlm-2900	265	15	-	-	PUNCT
ajlm-2900	265	16	acquired	acquire	VERB
ajlm-2900	265	17	infections	infection	NOUN
ajlm-2900	265	18	of	of	ADP
ajlm-2900	265	19	salmonella	salmonella	PROPN
ajlm-2900	265	20	enterica	enterica	PROPN
ajlm-2900	265	21	serotype	serotype	PROPN
ajlm-2900	265	22	typhi	typhi	NOUN
ajlm-2900	265	23	in	in	ADP
ajlm-2900	265	24	south	south	PROPN
ajlm-2900	265	25	africa	africa	PROPN
ajlm-2900	265	26	:	:	PUNCT
ajlm-2900	265	27	phenotypic	phenotypic	NOUN
ajlm-2900	265	28	and	and	CCONJ
ajlm-2900	265	29	genotypic	genotypic	ADJ
ajlm-2900	265	30	analysis	analysis	NOUN
ajlm-2900	265	31	of	of	ADP
ajlm-2900	265	32	isolates	isolate	NOUN
ajlm-2900	265	33	.	.	PUNCT
ajlm-2900	266	1	bmc	bmc	PROPN
ajlm-2900	266	2	infect	infect	PROPN
ajlm-2900	266	3	dis	dis	PROPN
ajlm-2900	266	4	.	.	PUNCT
ajlm-2900	267	1	2017;17(1):656	2017;17(1):656	NUM
ajlm-2900	267	2	.	.	PUNCT
ajlm-2900	268	1	https://doi.org/10.1186/s12879-017-2757-2	https://doi.org/10.1186/s12879-017-2757-2	NUM
ajlm-2900	268	2	smith	smith	PROPN
ajlm-2900	268	3	am	be	AUX
ajlm-2900	268	4	,	,	PUNCT
ajlm-2900	268	5	keddy	keddy	PROPN
ajlm-2900	268	6	kh	kh	PROPN
ajlm-2900	268	7	,	,	PUNCT
ajlm-2900	268	8	ismail	ismail	PROPN
ajlm-2900	268	9	h	h	PROPN
ajlm-2900	268	10	,	,	PUNCT
ajlm-2900	268	11	et	et	PROPN
ajlm-2900	268	12	al	al	PROPN
ajlm-2900	268	13	.	.	PUNCT
ajlm-2900	269	1	international	international	ADJ
ajlm-2900	269	2	collaboration	collaboration	NOUN
ajlm-2900	269	3	tracks	track	VERB
ajlm-2900	269	4	typhoid	typhoid	NOUN
ajlm-2900	269	5	fever	fever	NOUN
ajlm-2900	269	6	cases	case	NOUN
ajlm-2900	269	7	over	over	ADP
ajlm-2900	269	8	two	two	NUM
ajlm-2900	269	9	continents	continent	NOUN
ajlm-2900	269	10	from	from	ADP
ajlm-2900	269	11	south	south	PROPN
ajlm-2900	269	12	africa	africa	PROPN
ajlm-2900	269	13	to	to	ADP
ajlm-2900	269	14	australia	australia	PROPN
ajlm-2900	269	15	.	.	PUNCT
ajlm-2900	270	1	j	j	PROPN
ajlm-2900	270	2	med	med	PROPN
ajlm-2900	270	3	microbiol	microbiol	PROPN
ajlm-2900	270	4	.	.	PUNCT
ajlm-2900	271	1	2011;60(9):1405–1407	2011;60(9):1405–1407	NOUN
ajlm-2900	271	2	.	.	PUNCT
ajlm-2900	272	1	https://doi.org/10.1099/jmm.0.030700-0	https://doi.org/10.1099/jmm.0.030700-0	PROPN
ajlm-2900	272	2	tau	tau	PROPN
ajlm-2900	272	3	np	np	INTJ
ajlm-2900	272	4	,	,	PUNCT
ajlm-2900	272	5	smith	smith	PROPN
ajlm-2900	272	6	am	am	PROPN
ajlm-2900	272	7	,	,	PUNCT
ajlm-2900	272	8	wain	wain	PROPN
ajlm-2900	272	9	jr	jr	PROPN
ajlm-2900	272	10	,	,	PUNCT
ajlm-2900	272	11	et	et	PROPN
ajlm-2900	272	12	al	al	PROPN
ajlm-2900	272	13	.	.	PUNCT
ajlm-2900	272	14	development	development	NOUN
ajlm-2900	272	15	and	and	CCONJ
ajlm-2900	272	16	evaluation	evaluation	NOUN
ajlm-2900	272	17	of	of	ADP
ajlm-2900	272	18	a	a	DET
ajlm-2900	272	19	multiple	multiple	ADJ
ajlm-2900	272	20	-	-	PUNCT
ajlm-2900	272	21	locus	locus	ADJ
ajlm-2900	272	22	variable	variable	ADJ
ajlm-2900	272	23	-	-	PUNCT
ajlm-2900	272	24	number	number	NOUN
ajlm-2900	272	25	tandem	tandem	NOUN
ajlm-2900	272	26	-	-	PUNCT
ajlm-2900	272	27	repeats	repeat	VERB
ajlm-2900	272	28	analysis	analysis	NOUN
ajlm-2900	272	29	assay	assay	VERB
ajlm-2900	272	30	for	for	ADP
ajlm-2900	272	31	subtyping	subtype	VERB
ajlm-2900	272	32	salmonella	salmonella	NOUN
ajlm-2900	272	33	typhi	typhi	VERB
ajlm-2900	272	34	strains	strain	NOUN
ajlm-2900	272	35	from	from	ADP
ajlm-2900	272	36	sub	sub	ADJ
ajlm-2900	272	37	-	-	ADJ
ajlm-2900	272	38	saharan	saharan	ADJ
ajlm-2900	272	39	africa	africa	PROPN
ajlm-2900	272	40	.	.	PUNCT
ajlm-2900	273	1	j	j	PROPN
ajlm-2900	273	2	med	med	PROPN
ajlm-2900	273	3	microbiol	microbiol	PROPN
ajlm-2900	273	4	.	.	PUNCT
ajlm-2900	274	1	2017;66(7):937–945	2017;66(7):937–945	X
ajlm-2900	274	2	.	.	X
ajlm-2900	274	3	https://doi.org/10.1099/jmm.0.000526	https://doi.org/10.1099/jmm.0.000526	PROPN
ajlm-2900	274	4	smith	smith	PROPN
ajlm-2900	274	5	am	be	AUX
ajlm-2900	274	6	,	,	PUNCT
ajlm-2900	274	7	erasmus	erasmus	PROPN
ajlm-2900	274	8	lk	lk	PROPN
ajlm-2900	274	9	,	,	PUNCT
ajlm-2900	274	10	tau	tau	PROPN
ajlm-2900	274	11	np	np	INTJ
ajlm-2900	274	12	,	,	PUNCT
ajlm-2900	274	13	et	et	PROPN
ajlm-2900	274	14	al	al	PROPN
ajlm-2900	274	15	.	.	PROPN
ajlm-2900	274	16	enteric	enteric	ADJ
ajlm-2900	274	17	fever	fever	NOUN
ajlm-2900	274	18	cluster	cluster	NOUN
ajlm-2900	274	19	identification	identification	NOUN
ajlm-2900	274	20	in	in	ADP
ajlm-2900	274	21	south	south	PROPN
ajlm-2900	274	22	africa	africa	PROPN
ajlm-2900	274	23	using	use	VERB
ajlm-2900	274	24	genomic	genomic	NOUN
ajlm-2900	274	25	surveillance	surveillance	NOUN
ajlm-2900	274	26	of	of	ADP
ajlm-2900	274	27	salmonella	salmonella	PROPN
ajlm-2900	274	28	enterica	enterica	PROPN
ajlm-2900	274	29	serovar	serovar	PROPN
ajlm-2900	274	30	typhi	typhi	PROPN
ajlm-2900	274	31	.	.	PUNCT
ajlm-2900	275	1	microb	microb	PROPN
ajlm-2900	275	2	genom	genom	PROPN
ajlm-2900	275	3	.	.	PUNCT
ajlm-2900	276	1	2023;9(6):mgen001044	2023;9(6):mgen001044	NUM
ajlm-2900	276	2	.	.	PUNCT
ajlm-2900	277	1	https://doi.org/10.1099/mgen.0.001044	https://doi.org/10.1099/mgen.0.001044	PROPN
ajlm-2900	277	2	smith	smith	PROPN
ajlm-2900	277	3	am	be	AUX
ajlm-2900	277	4	,	,	PUNCT
ajlm-2900	277	5	tau	tau	PROPN
ajlm-2900	277	6	np	np	INTJ
ajlm-2900	277	7	,	,	PUNCT
ajlm-2900	277	8	smouse	smouse	NOUN
ajlm-2900	277	9	sl	sl	PROPN
ajlm-2900	277	10	,	,	PUNCT
ajlm-2900	277	11	et	et	PROPN
ajlm-2900	277	12	al	al	PROPN
ajlm-2900	277	13	.	.	PROPN
ajlm-2900	277	14	outbreak	outbreak	PROPN
ajlm-2900	277	15	of	of	ADP
ajlm-2900	277	16	listeria	listeria	NOUN
ajlm-2900	277	17	monocytogenes	monocytogene	NOUN
ajlm-2900	277	18	in	in	ADP
ajlm-2900	277	19	south	south	PROPN
ajlm-2900	277	20	africa	africa	PROPN
ajlm-2900	277	21	,	,	PUNCT
ajlm-2900	277	22	2017–2018	2017–2018	NUM
ajlm-2900	277	23	:	:	PUNCT
ajlm-2900	277	24	laboratory	laboratory	NOUN
ajlm-2900	277	25	activities	activity	NOUN
ajlm-2900	277	26	and	and	CCONJ
ajlm-2900	277	27	experiences	experience	NOUN
ajlm-2900	277	28	associated	associate	VERB
ajlm-2900	277	29	with	with	ADP
ajlm-2900	277	30	whole	whole	ADJ
ajlm-2900	277	31	-	-	PUNCT
ajlm-2900	277	32	genome	genome	NOUN
ajlm-2900	277	33	sequencing	sequencing	NOUN
ajlm-2900	277	34	analysis	analysis	NOUN
ajlm-2900	277	35	of	of	ADP
ajlm-2900	277	36	isolates	isolate	NOUN
ajlm-2900	277	37	.	.	PUNCT
ajlm-2900	278	1	foodborne	foodborne	PROPN
ajlm-2900	278	2	pathog	pathog	PROPN
ajlm-2900	278	3	dis	dis	PROPN
ajlm-2900	278	4	.	.	PUNCT
ajlm-2900	279	1	2019;16(7	2019;16(7	NUM
ajlm-2900	279	2	):	):	PUNCT
ajlm-2900	280	1	524–530	524–530	NUM
ajlm-2900	280	2	.	.	PUNCT
ajlm-2900	281	1	https://doi.org/10.1089/fpd.2018.2586	https://doi.org/10.1089/fpd.2018.2586	NOUN
ajlm-2900	281	2	clinical	clinical	ADJ
ajlm-2900	281	3	and	and	CCONJ
ajlm-2900	281	4	laboratory	laboratory	NOUN
ajlm-2900	281	5	standards	standard	NOUN
ajlm-2900	281	6	institute	institute	PROPN
ajlm-2900	281	7	(	(	PUNCT
ajlm-2900	281	8	clsi	clsi	PROPN
ajlm-2900	281	9	)	)	PUNCT
ajlm-2900	281	10	.	.	PUNCT
ajlm-2900	282	1	2018	2018	NUM
ajlm-2900	282	2	.	.	PUNCT
ajlm-2900	283	1	performance	performance	NOUN
ajlm-2900	283	2	standards	standard	NOUN
ajlm-2900	283	3	for	for	ADP
ajlm-2900	283	4	antimicrobial	antimicrobial	ADJ
ajlm-2900	283	5	susceptibility	susceptibility	NOUN
ajlm-2900	283	6	testing	testing	NOUN
ajlm-2900	283	7	;	;	PUNCT
ajlm-2900	283	8	twenty	twenty	NUM
ajlm-2900	283	9	-	-	PUNCT
ajlm-2900	283	10	eighth	eighth	ADJ
ajlm-2900	283	11	informational	informational	ADJ
ajlm-2900	283	12	supplement	supplement	NOUN
ajlm-2900	283	13	.	.	PUNCT
ajlm-2900	284	1	clsi	clsi	PROPN
ajlm-2900	284	2	document	document	NOUN
ajlm-2900	284	3	m100	m100	PROPN
ajlm-2900	284	4	-	-	PUNCT
ajlm-2900	284	5	s28	s28	PROPN
ajlm-2900	284	6	.	.	PUNCT
ajlm-2900	285	1	wayne	wayne	PROPN
ajlm-2900	285	2	,	,	PUNCT
ajlm-2900	285	3	pa	pa	PROPN
ajlm-2900	285	4	:	:	PUNCT
ajlm-2900	285	5	clinical	clinical	ADJ
ajlm-2900	285	6	and	and	CCONJ
ajlm-2900	285	7	laboratory	laboratory	NOUN
ajlm-2900	285	8	standards	standards	PROPN
ajlm-2900	285	9	institute	institute	PROPN
ajlm-2900	285	10	.	.	PUNCT
ajlm-2900	286	1	feldgarden	feldgarden	PROPN
ajlm-2900	286	2	m	m	PROPN
ajlm-2900	286	3	,	,	PUNCT
ajlm-2900	286	4	brover	brover	PROPN
ajlm-2900	286	5	v	v	NOUN
ajlm-2900	286	6	,	,	PUNCT
ajlm-2900	286	7	haft	haft	NOUN
ajlm-2900	286	8	dh	dh	NOUN
ajlm-2900	286	9	,	,	PUNCT
ajlm-2900	286	10	et	et	PROPN
ajlm-2900	286	11	al	al	PROPN
ajlm-2900	286	12	.	.	PUNCT
ajlm-2900	287	1	validating	validate	VERB
ajlm-2900	287	2	the	the	DET
ajlm-2900	287	3	amrfinder	amrfinder	NOUN
ajlm-2900	287	4	tool	tool	NOUN
ajlm-2900	287	5	and	and	CCONJ
ajlm-2900	287	6	resistance	resistance	NOUN
ajlm-2900	287	7	gene	gene	NOUN
ajlm-2900	287	8	database	database	NOUN
ajlm-2900	287	9	by	by	ADP
ajlm-2900	287	10	using	use	VERB
ajlm-2900	287	11	antimicrobial	antimicrobial	ADJ
ajlm-2900	287	12	resistance	resistance	NOUN
ajlm-2900	287	13	genotype	genotype	NOUN
ajlm-2900	287	14	-	-	PUNCT
ajlm-2900	287	15	phenotype	phenotype	NOUN
ajlm-2900	287	16	correlations	correlation	NOUN
ajlm-2900	287	17	in	in	ADP
ajlm-2900	287	18	a	a	DET
ajlm-2900	287	19	collection	collection	NOUN
ajlm-2900	287	20	of	of	ADP
ajlm-2900	287	21	isolates	isolate	NOUN
ajlm-2900	287	22	.	.	PUNCT
ajlm-2900	288	1	antimicrob	antimicrob	PROPN
ajlm-2900	288	2	agents	agents	PROPN
ajlm-2900	288	3	chemother	chemother	PROPN
ajlm-2900	288	4	.	.	PUNCT
ajlm-2900	289	1	2019;63(11):e00483	2019;63(11):e00483	NOUN
ajlm-2900	289	2	-	-	SYM
ajlm-2900	289	3	19	19	NUM
ajlm-2900	289	4	.	.	PUNCT
ajlm-2900	290	1	https://doi.org/10.1128/aac.00483-19	https://doi.org/10.1128/aac.00483-19	PROPN
ajlm-2900	290	2	zhou	zhou	PROPN
ajlm-2900	291	1	z	z	PROPN
ajlm-2900	291	2	,	,	PUNCT
ajlm-2900	291	3	alikhan	alikhan	PROPN
ajlm-2900	291	4	nf	nf	PROPN
ajlm-2900	291	5	,	,	PUNCT
ajlm-2900	291	6	sergeant	sergeant	PROPN
ajlm-2900	291	7	mj	mj	PROPN
ajlm-2900	291	8	,	,	PUNCT
ajlm-2900	291	9	et	et	PROPN
ajlm-2900	291	10	al	al	PROPN
ajlm-2900	291	11	.	.	PUNCT
ajlm-2900	291	12	grapetree	grapetree	PROPN
ajlm-2900	291	13	:	:	PUNCT
ajlm-2900	291	14	visualization	visualization	NOUN
ajlm-2900	291	15	of	of	ADP
ajlm-2900	291	16	core	core	ADJ
ajlm-2900	291	17	genomic	genomic	ADJ
ajlm-2900	291	18	relationships	relationship	NOUN
ajlm-2900	291	19	among	among	ADP
ajlm-2900	291	20	100,000	100,000	NUM
ajlm-2900	291	21	bacterial	bacterial	ADJ
ajlm-2900	291	22	pathogens	pathogen	NOUN
ajlm-2900	291	23	.	.	PUNCT
ajlm-2900	292	1	genome	genome	NOUN
ajlm-2900	292	2	res	re	NOUN
ajlm-2900	292	3	.	.	PUNCT
ajlm-2900	293	1	2018;28(9	2018;28(9	NUM
ajlm-2900	293	2	):	):	PUNCT
ajlm-2900	293	3	1395–1404	1395–1404	NUM
ajlm-2900	293	4	.	.	PUNCT
ajlm-2900	294	1	https://doi.org/10.1101/gr.232397.117	https://doi.org/10.1101/gr.232397.117	PROPN
ajlm-2900	294	2	tau	tau	PROPN
ajlm-2900	294	3	np	np	INTJ
ajlm-2900	294	4	,	,	PUNCT
ajlm-2900	294	5	meidany	meidany	NOUN
ajlm-2900	294	6	p	p	NOUN
ajlm-2900	294	7	,	,	PUNCT
ajlm-2900	294	8	smith	smith	PROPN
ajlm-2900	294	9	am	am	PROPN
ajlm-2900	294	10	,	,	PUNCT
ajlm-2900	294	11	sooka	sooka	VERB
ajlm-2900	294	12	a	a	PRON
ajlm-2900	294	13	,	,	PUNCT
ajlm-2900	294	14	keddy	keddy	PROPN
ajlm-2900	294	15	kh	kh	PROPN
ajlm-2900	294	16	.	.	PROPN
ajlm-2900	294	17	escherichia	escherichia	NOUN
ajlm-2900	294	18	coli	coli	NOUN
ajlm-2900	294	19	o104	o104	PROPN
ajlm-2900	294	20	associated	associate	VERB
ajlm-2900	294	21	with	with	ADP
ajlm-2900	294	22	human	human	ADJ
ajlm-2900	294	23	diarrhea	diarrhea	PROPN
ajlm-2900	294	24	,	,	PUNCT
ajlm-2900	294	25	south	south	PROPN
ajlm-2900	294	26	africa	africa	PROPN
ajlm-2900	294	27	,	,	PUNCT
ajlm-2900	294	28	2004–2011	2004–2011	NUM
ajlm-2900	294	29	.	.	PUNCT
ajlm-2900	295	1	emerg	emerg	PROPN
ajlm-2900	295	2	infect	infect	PROPN
ajlm-2900	295	3	dis	dis	PROPN
ajlm-2900	295	4	.	.	PUNCT
ajlm-2900	296	1	2012;18(8	2012;18(8	NUM
ajlm-2900	296	2	):	):	PUNCT
ajlm-2900	296	3	1314–1317	1314–1317	NUM
ajlm-2900	296	4	.	.	PUNCT
ajlm-2900	297	1	https://doi.org/10.3201/eid1808.111616	https://doi.org/10.3201/eid1808.111616	PRON
ajlm-2900	297	2	nadon	nadon	PROPN
ajlm-2900	297	3	c	c	PROPN
ajlm-2900	297	4	,	,	PUNCT
ajlm-2900	297	5	van	van	PROPN
ajlm-2900	297	6	walle	walle	PROPN
ajlm-2900	297	7	i	i	PROPN
ajlm-2900	297	8	,	,	PUNCT
ajlm-2900	297	9	gerner	gerner	NOUN
ajlm-2900	297	10	-	-	PUNCT
ajlm-2900	297	11	smidt	smidt	NOUN
ajlm-2900	297	12	p	p	NOUN
ajlm-2900	297	13	,	,	PUNCT
ajlm-2900	297	14	et	et	PROPN
ajlm-2900	297	15	al	al	PROPN
ajlm-2900	297	16	.	.	PUNCT
ajlm-2900	298	1	pulsenet	pulsenet	PROPN
ajlm-2900	298	2	international	international	PROPN
ajlm-2900	298	3	:	:	PUNCT
ajlm-2900	298	4	vision	vision	NOUN
ajlm-2900	298	5	for	for	ADP
ajlm-2900	298	6	the	the	DET
ajlm-2900	298	7	implementation	implementation	NOUN
ajlm-2900	298	8	of	of	ADP
ajlm-2900	298	9	whole	whole	ADJ
ajlm-2900	298	10	genome	genome	NOUN
ajlm-2900	298	11	sequencing	sequence	VERB
ajlm-2900	298	12	(	(	PUNCT
ajlm-2900	298	13	wgs	wgs	NOUN
ajlm-2900	298	14	)	)	PUNCT
ajlm-2900	298	15	for	for	ADP
ajlm-2900	298	16	global	global	ADJ
ajlm-2900	298	17	food	food	NOUN
ajlm-2900	298	18	-	-	PUNCT
ajlm-2900	298	19	borne	bear	VERB
ajlm-2900	298	20	disease	disease	NOUN
ajlm-2900	298	21	surveillance	surveillance	NOUN
ajlm-2900	298	22	.	.	PUNCT
ajlm-2900	299	1	euro	euro	NOUN
ajlm-2900	299	2	surveill	surveill	NOUN
ajlm-2900	299	3	.	.	PUNCT
ajlm-2900	300	1	2017;22(23):30544	2017;22(23):30544	X
ajlm-2900	300	2	.	.	X
ajlm-2900	300	3	https://doi.org/10.2807/1560-7917.es.2017.22.23.30544	https://doi.org/10.2807/1560-7917.es.2017.22.23.30544	PROPN
ajlm-2900	300	4	european	european	ADJ
ajlm-2900	300	5	centre	centre	PROPN
ajlm-2900	300	6	for	for	ADP
ajlm-2900	300	7	disease	disease	NOUN
ajlm-2900	300	8	prevention	prevention	NOUN
ajlm-2900	300	9	and	and	CCONJ
ajlm-2900	300	10	control	control	NOUN
ajlm-2900	300	11	.	.	PUNCT
ajlm-2900	301	1	thirteenth	thirteenth	ADJ
ajlm-2900	301	2	external	external	ADJ
ajlm-2900	301	3	quality	quality	NOUN
ajlm-2900	301	4	assessment	assessment	NOUN
ajlm-2900	301	5	for	for	ADP
ajlm-2900	301	6	salmonella	salmonella	NOUN
ajlm-2900	301	7	typing	type	VERB
ajlm-2900	301	8	[	[	X
ajlm-2900	301	9	homepage	homepage	NOUN
ajlm-2900	301	10	on	on	ADP
ajlm-2900	301	11	the	the	DET
ajlm-2900	301	12	internet	internet	NOUN
ajlm-2900	301	13	]	]	PUNCT
ajlm-2900	301	14	.	.	PUNCT
ajlm-2900	302	1	stockholm	stockholm	PROPN
ajlm-2900	302	2	:	:	PUNCT
ajlm-2900	302	3	ecdc	ecdc	NOUN
ajlm-2900	302	4	;	;	PUNCT
ajlm-2900	302	5	2024	2024	NUM
ajlm-2900	303	1	[	[	PUNCT
ajlm-2900	303	2	cited	cite	VERB
ajlm-2900	303	3	2024	2024	NUM
ajlm-2900	303	4	oct	oct	NOUN
ajlm-2900	303	5	31	31	NUM
ajlm-2900	303	6	]	]	PUNCT
ajlm-2900	303	7	.	.	PUNCT
ajlm-2900	304	1	available	available	ADJ
ajlm-2900	304	2	from	from	ADP
ajlm-2900	304	3	:	:	PUNCT
ajlm-2900	304	4	https://www.ecdc.europa.eu/en/publications-data/thirteenth-external-quality-assessment-salmonella-typing	https://www.ecdc.europa.eu/en/publications-data/thirteenth-external-quality-assessment-salmonella-typing	NOUN
ajlm-2900	304	5	dtu	dtu	NOUN
ajlm-2900	304	6	genomic	genomic	NOUN
ajlm-2900	304	7	.	.	PUNCT
ajlm-2900	305	1	genomic	genomic	ADJ
ajlm-2900	305	2	proficiency	proficiency	NOUN
ajlm-2900	305	3	test	test	NOUN
ajlm-2900	305	4	2023	2023	NUM
ajlm-2900	306	1	[	[	X
ajlm-2900	306	2	homepage	homepage	NOUN
ajlm-2900	306	3	on	on	ADP
ajlm-2900	306	4	the	the	DET
ajlm-2900	306	5	internet	internet	NOUN
ajlm-2900	306	6	]	]	PUNCT
ajlm-2900	306	7	.	.	PUNCT
ajlm-2900	307	1	2023	2023	NUM
ajlm-2900	308	1	[	[	X
ajlm-2900	308	2	cited	cite	VERB
ajlm-2900	308	3	2024	2024	NUM
ajlm-2900	308	4	oct	oct	NOUN
ajlm-2900	308	5	31	31	NUM
ajlm-2900	308	6	]	]	PUNCT
ajlm-2900	308	7	.	.	PUNCT
ajlm-2900	309	1	available	available	ADJ
ajlm-2900	309	2	from	from	ADP
ajlm-2900	309	3	:	:	PUNCT
ajlm-2900	309	4	https://www.globalsurveillance.eu/projects/genomic-proficiency-test-2023	https://www.globalsurveillance.eu/projects/genomic-proficiency-test-2023	PROPN
ajlm-2900	309	5	alikhan	alikhan	NOUN
ajlm-2900	309	6	nf	nf	PROPN
ajlm-2900	309	7	,	,	PUNCT
ajlm-2900	309	8	zhou	zhou	PROPN
ajlm-2900	309	9	z	z	PROPN
ajlm-2900	309	10	,	,	PUNCT
ajlm-2900	309	11	sergeant	sergeant	PROPN
ajlm-2900	309	12	mj	mj	PROPN
ajlm-2900	309	13	,	,	PUNCT
ajlm-2900	309	14	achtman	achtman	PROPN
ajlm-2900	309	15	m.	m.	NOUN
ajlm-2900	310	1	a	a	DET
ajlm-2900	310	2	genomic	genomic	ADJ
ajlm-2900	310	3	overview	overview	NOUN
ajlm-2900	310	4	of	of	ADP
ajlm-2900	310	5	the	the	DET
ajlm-2900	310	6	population	population	NOUN
ajlm-2900	310	7	structure	structure	NOUN
ajlm-2900	310	8	of	of	ADP
ajlm-2900	310	9	salmonella	salmonella	NOUN
ajlm-2900	310	10	.	.	PUNCT
ajlm-2900	311	1	plos	plos	PROPN
ajlm-2900	311	2	genet	genet	PROPN
ajlm-2900	311	3	.	.	PUNCT
ajlm-2900	312	1	2018;14(4):e1007261	2018;14(4):e1007261	X
ajlm-2900	312	2	.	.	PUNCT
ajlm-2900	313	1	https://doi.org/10.1371/journal.pgen.1007261	https://doi.org/10.1371/journal.pgen.1007261	PROPN
ajlm-2900	313	2	deng	deng	PROPN
ajlm-2900	313	3	x	x	PROPN
ajlm-2900	313	4	,	,	PUNCT
ajlm-2900	313	5	li	li	PROPN
ajlm-2900	313	6	s	s	PROPN
ajlm-2900	313	7	,	,	PUNCT
ajlm-2900	313	8	xu	xu	PROPN
ajlm-2900	313	9	t	t	PROPN
ajlm-2900	313	10	,	,	PUNCT
ajlm-2900	313	11	et	et	PROPN
ajlm-2900	313	12	al	al	PROPN
ajlm-2900	313	13	.	.	PROPN
ajlm-2900	313	14	salmonella	salmonella	PROPN
ajlm-2900	313	15	serotypes	serotype	NOUN
ajlm-2900	313	16	in	in	ADP
ajlm-2900	313	17	the	the	DET
ajlm-2900	313	18	genomic	genomic	ADJ
ajlm-2900	313	19	era	era	NOUN
ajlm-2900	313	20	:	:	PUNCT
ajlm-2900	313	21	simplified	simplified	ADJ
ajlm-2900	313	22	salmonella	salmonella	NOUN
ajlm-2900	313	23	serotype	serotype	ADJ
ajlm-2900	313	24	interpretation	interpretation	NOUN
ajlm-2900	313	25	from	from	ADP
ajlm-2900	313	26	dna	dna	PROPN
ajlm-2900	313	27	sequence	sequence	NOUN
ajlm-2900	313	28	data	datum	NOUN
ajlm-2900	313	29	.	.	PUNCT
ajlm-2900	314	1	appl	appl	PROPN
ajlm-2900	314	2	environ	environ	PROPN
ajlm-2900	314	3	microbiol	microbiol	PROPN
ajlm-2900	314	4	.	.	PUNCT
ajlm-2900	315	1	2025;91(3):e0260024	2025;91(3):e0260024	NUM
ajlm-2900	315	2	.	.	PUNCT
ajlm-2900	316	1	van	van	PROPN
ajlm-2900	316	2	puyvelde	puyvelde	PROPN
ajlm-2900	316	3	s	s	PROPN
ajlm-2900	316	4	,	,	PUNCT
ajlm-2900	316	5	de	de	X
ajlm-2900	316	6	block	block	PROPN
ajlm-2900	316	7	t	t	PROPN
ajlm-2900	316	8	,	,	PUNCT
ajlm-2900	316	9	sridhar	sridhar	PROPN
ajlm-2900	316	10	s	s	PART
ajlm-2900	316	11	,	,	PUNCT
ajlm-2900	316	12	et	et	PROPN
ajlm-2900	316	13	al	al	PROPN
ajlm-2900	316	14	.	.	PUNCT
ajlm-2900	317	1	a	a	DET
ajlm-2900	317	2	genomic	genomic	ADJ
ajlm-2900	317	3	appraisal	appraisal	NOUN
ajlm-2900	317	4	of	of	ADP
ajlm-2900	317	5	invasive	invasive	ADJ
ajlm-2900	317	6	salmonella	salmonella	NOUN
ajlm-2900	317	7	typhimurium	typhimurium	NOUN
ajlm-2900	317	8	and	and	CCONJ
ajlm-2900	317	9	associated	associate	VERB
ajlm-2900	317	10	antibiotic	antibiotic	ADJ
ajlm-2900	317	11	resistance	resistance	NOUN
ajlm-2900	317	12	in	in	ADP
ajlm-2900	317	13	sub	sub	ADJ
ajlm-2900	317	14	-	-	ADJ
ajlm-2900	317	15	saharan	saharan	ADJ
ajlm-2900	317	16	africa	africa	PROPN
ajlm-2900	317	17	.	.	PUNCT
ajlm-2900	318	1	nat	nat	PROPN
ajlm-2900	318	2	commun	commun	PROPN
ajlm-2900	318	3	.	.	PUNCT
ajlm-2900	319	1	2023;14(1	2023;14(1	NUM
ajlm-2900	319	2	):	):	PUNCT
ajlm-2900	319	3	6392	6392	NUM
ajlm-2900	319	4	.	.	PUNCT
ajlm-2900	320	1	https://doi.org/10.1038/s41467-023-41152-6	https://doi.org/10.1038/s41467-023-41152-6	NOUN
ajlm-2900	320	2	sun	sun	PROPN
ajlm-2900	320	3	h	h	NOUN
ajlm-2900	320	4	,	,	PUNCT
ajlm-2900	320	5	wan	wan	PROPN
ajlm-2900	320	6	y	y	PROPN
ajlm-2900	320	7	,	,	PUNCT
ajlm-2900	320	8	du	du	PROPN
ajlm-2900	320	9	p	p	X
ajlm-2900	320	10	,	,	PUNCT
ajlm-2900	320	11	bai	bai	PROPN
ajlm-2900	320	12	l.	l.	PROPN
ajlm-2900	320	13	the	the	DET
ajlm-2900	320	14	epidemiology	epidemiology	NOUN
ajlm-2900	320	15	of	of	ADP
ajlm-2900	320	16	monophasic	monophasic	ADJ
ajlm-2900	320	17	salmonella	salmonella	PROPN
ajlm-2900	320	18	typhimurium	typhimurium	PROPN
ajlm-2900	320	19	.	.	PUNCT
ajlm-2900	321	1	foodborne	foodborne	PROPN
ajlm-2900	321	2	pathog	pathog	PROPN
ajlm-2900	321	3	dis	dis	PROPN
ajlm-2900	321	4	.	.	PUNCT
ajlm-2900	322	1	2020;17(2):87–97	2020;17(2):87–97	X
ajlm-2900	322	2	.	.	PUNCT
ajlm-2900	323	1	https://doi.org/10.1089/fpd.2019.2676	https://doi.org/10.1089/fpd.2019.2676	ADP
ajlm-2900	323	2	larkin	larkin	PROPN
ajlm-2900	323	3	l	l	PROPN
ajlm-2900	323	4	,	,	PUNCT
ajlm-2900	323	5	pardos	pardos	PROPN
ajlm-2900	323	6	de	de	X
ajlm-2900	323	7	la	la	X
ajlm-2900	323	8	gandara	gandara	PROPN
ajlm-2900	323	9	m	m	PROPN
ajlm-2900	323	10	,	,	PUNCT
ajlm-2900	323	11	hoban	hoban	X
ajlm-2900	323	12	a	a	PROPN
ajlm-2900	323	13	,	,	PUNCT
ajlm-2900	323	14	et	et	PROPN
ajlm-2900	323	15	al	al	PROPN
ajlm-2900	323	16	.	.	PROPN
ajlm-2900	324	1	investigation	investigation	NOUN
ajlm-2900	324	2	of	of	ADP
ajlm-2900	324	3	an	an	DET
ajlm-2900	324	4	international	international	ADJ
ajlm-2900	324	5	outbreak	outbreak	NOUN
ajlm-2900	324	6	of	of	ADP
ajlm-2900	324	7	multidrug	multidrug	NOUN
ajlm-2900	324	8	-	-	PUNCT
ajlm-2900	324	9	resistant	resistant	ADJ
ajlm-2900	324	10	monophasic	monophasic	ADJ
ajlm-2900	324	11	salmonella	salmonella	NOUN
ajlm-2900	324	12	typhimurium	typhimurium	PROPN
ajlm-2900	324	13	associated	associate	VERB
ajlm-2900	324	14	with	with	ADP
ajlm-2900	324	15	chocolate	chocolate	NOUN
ajlm-2900	324	16	products	product	NOUN
ajlm-2900	324	17	,	,	PUNCT
ajlm-2900	324	18	eu	eu	PROPN
ajlm-2900	324	19	/	/	SYM
ajlm-2900	324	20	eea	eea	PROPN
ajlm-2900	324	21	and	and	CCONJ
ajlm-2900	324	22	united	united	PROPN
ajlm-2900	324	23	kingdom	kingdom	PROPN
ajlm-2900	324	24	,	,	PUNCT
ajlm-2900	324	25	february	february	PROPN
ajlm-2900	324	26	to	to	ADP
ajlm-2900	324	27	april	april	PROPN
ajlm-2900	324	28	2022	2022	NUM
ajlm-2900	324	29	.	.	PUNCT
ajlm-2900	325	1	euro	euro	NOUN
ajlm-2900	325	2	surveill	surveill	NOUN
ajlm-2900	325	3	.	.	PUNCT
ajlm-2900	326	1	2022;27(15):2200314	2022;27(15):2200314	X
ajlm-2900	326	2	.	.	PUNCT
ajlm-2900	327	1	https://doi.org/10.2807/1560-7917.es.2022.27.15.2200314	https://doi.org/10.2807/1560-7917.es.2022.27.15.2200314	PROPN
ajlm-2900	327	2	carey	carey	PROPN
ajlm-2900	327	3	me	i	PRON
ajlm-2900	327	4	,	,	PUNCT
ajlm-2900	327	5	thi	thi	VERB
ajlm-2900	327	6	nguyen	nguyen	PROPN
ajlm-2900	327	7	tn	tn	PROPN
ajlm-2900	327	8	,	,	PUNCT
ajlm-2900	327	9	tran	tran	PROPN
ajlm-2900	327	10	dhn	dhn	PROPN
ajlm-2900	327	11	,	,	PUNCT
ajlm-2900	327	12	et	et	PROPN
ajlm-2900	327	13	al	al	PROPN
ajlm-2900	327	14	.	.	PUNCT
ajlm-2900	328	1	the	the	DET
ajlm-2900	328	2	origins	origin	NOUN
ajlm-2900	328	3	of	of	ADP
ajlm-2900	328	4	haplotype	haplotype	NOUN
ajlm-2900	328	5	58	58	NUM
ajlm-2900	328	6	(	(	PUNCT
ajlm-2900	328	7	h58	h58	PROPN
ajlm-2900	328	8	)	)	PUNCT
ajlm-2900	328	9	salmonella	salmonella	PROPN
ajlm-2900	328	10	enterica	enterica	PROPN
ajlm-2900	328	11	serovar	serovar	PROPN
ajlm-2900	328	12	typhi	typhi	ADV
ajlm-2900	328	13	.	.	PUNCT
ajlm-2900	329	1	commun	commun	PROPN
ajlm-2900	329	2	biol	biol	PROPN
ajlm-2900	329	3	.	.	PUNCT
ajlm-2900	330	1	2024;7(1):775	2024;7(1):775	X
ajlm-2900	330	2	.	.	PUNCT
ajlm-2900	330	3	https://doi.org/10.1038/s42003-024-06451-8	https://doi.org/10.1038/s42003-024-06451-8	PROPN
ajlm-2900	330	4	sekwadi	sekwadi	PROPN
ajlm-2900	330	5	p	p	PROPN
ajlm-2900	330	6	,	,	PUNCT
ajlm-2900	330	7	smith	smith	PROPN
ajlm-2900	330	8	am	am	PROPN
ajlm-2900	330	9	,	,	PUNCT
ajlm-2900	330	10	maruma	maruma	PROPN
ajlm-2900	330	11	w	w	PROPN
ajlm-2900	330	12	,	,	PUNCT
ajlm-2900	330	13	et	et	PROPN
ajlm-2900	330	14	al	al	PROPN
ajlm-2900	330	15	.	.	PUNCT
ajlm-2900	331	1	a	a	DET
ajlm-2900	331	2	prolonged	prolonged	ADJ
ajlm-2900	331	3	outbreak	outbreak	NOUN
ajlm-2900	331	4	of	of	ADP
ajlm-2900	331	5	enteric	enteric	ADJ
ajlm-2900	331	6	fever	fever	NOUN
ajlm-2900	331	7	associated	associate	VERB
ajlm-2900	331	8	with	with	ADP
ajlm-2900	331	9	illegal	illegal	ADJ
ajlm-2900	331	10	miners	miner	NOUN
ajlm-2900	331	11	in	in	ADP
ajlm-2900	331	12	the	the	DET
ajlm-2900	331	13	city	city	NOUN
ajlm-2900	331	14	of	of	ADP
ajlm-2900	331	15	matlosana	matlosana	PROPN
ajlm-2900	331	16	,	,	PUNCT
ajlm-2900	331	17	south	south	PROPN
ajlm-2900	331	18	africa	africa	PROPN
ajlm-2900	331	19	,	,	PUNCT
ajlm-2900	331	20	november	november	PROPN
ajlm-2900	331	21	2020	2020	NUM
ajlm-2900	331	22	-	-	PUNCT
ajlm-2900	331	23	september	september	PROPN
ajlm-2900	331	24	2022	2022	NUM
ajlm-2900	331	25	.	.	PUNCT
ajlm-2900	332	1	open	open	ADJ
ajlm-2900	332	2	forum	forum	PROPN
ajlm-2900	332	3	infect	infect	VERB
ajlm-2900	332	4	dis	dis	PROPN
ajlm-2900	332	5	.	.	PUNCT
ajlm-2900	333	1	2024;11(3):ofae118	2024;11(3):ofae118	X
ajlm-2900	333	2	.	.	PUNCT
ajlm-2900	333	3	https://doi.org/10.1093/ofid/ofae118	https://doi.org/10.1093/ofid/ofae118	PUNCT
ajlm-2900	334	1	lamas	lama	NOUN
ajlm-2900	334	2	a	a	PRON
ajlm-2900	334	3	,	,	PUNCT
ajlm-2900	334	4	miranda	miranda	PROPN
ajlm-2900	334	5	jm	jm	PROPN
ajlm-2900	334	6	,	,	PUNCT
ajlm-2900	334	7	regal	regal	NOUN
ajlm-2900	334	8	p	p	NOUN
ajlm-2900	334	9	,	,	PUNCT
ajlm-2900	334	10	vázquez	vázquez	NOUN
ajlm-2900	334	11	b	b	NOUN
ajlm-2900	334	12	,	,	PUNCT
ajlm-2900	334	13	franco	franco	PROPN
ajlm-2900	334	14	cm	cm	PROPN
ajlm-2900	334	15	,	,	PUNCT
ajlm-2900	334	16	cepeda	cepeda	PROPN
ajlm-2900	334	17	a.	a.	PROPN
ajlm-2900	334	18	a	a	DET
ajlm-2900	334	19	comprehensive	comprehensive	ADJ
ajlm-2900	334	20	review	review	NOUN
ajlm-2900	334	21	of	of	ADP
ajlm-2900	334	22	non	non	ADJ
ajlm-2900	334	23	-	-	ADJ
ajlm-2900	334	24	enterica	enterica	ADJ
ajlm-2900	334	25	subspecies	subspecie	NOUN
ajlm-2900	334	26	of	of	ADP
ajlm-2900	334	27	salmonella	salmonella	PROPN
ajlm-2900	334	28	enterica	enterica	PROPN
ajlm-2900	334	29	.	.	PUNCT
ajlm-2900	335	1	microbiol	microbiol	PROPN
ajlm-2900	335	2	res	re	NOUN
ajlm-2900	335	3	.	.	PUNCT
ajlm-2900	336	1	2018;206:60–73	2018;206:60–73	NUM
ajlm-2900	336	2	.	.	PUNCT
ajlm-2900	336	3	https://doi.org/10.1016/j.micres.2017.09.010	https://doi.org/10.1016/j.micres.2017.09.010	NOUN
ajlm-2900	336	4	dos	dos	PROPN
ajlm-2900	336	5	santos	santos	PROPN
ajlm-2900	336	6	amp	amp	PROPN
ajlm-2900	336	7	,	,	PUNCT
ajlm-2900	336	8	panzenhagen	panzenhagen	NOUN
ajlm-2900	336	9	p	p	NOUN
ajlm-2900	336	10	,	,	PUNCT
ajlm-2900	336	11	et	et	PROPN
ajlm-2900	336	12	al	al	PROPN
ajlm-2900	336	13	.	.	PUNCT
ajlm-2900	337	1	genomic	genomic	ADJ
ajlm-2900	337	2	characterization	characterization	NOUN
ajlm-2900	337	3	of	of	ADP
ajlm-2900	337	4	salmonella	salmonella	NOUN
ajlm-2900	337	5	isangi	isangi	VERB
ajlm-2900	337	6	:	:	PUNCT
ajlm-2900	337	7	a	a	DET
ajlm-2900	337	8	global	global	ADJ
ajlm-2900	337	9	perspective	perspective	NOUN
ajlm-2900	337	10	of	of	ADP
ajlm-2900	337	11	a	a	DET
ajlm-2900	337	12	rare	rare	ADJ
ajlm-2900	337	13	serovar	serovar	NOUN
ajlm-2900	337	14	.	.	PUNCT
ajlm-2900	338	1	antibiotics	antibiotic	NOUN
ajlm-2900	338	2	.	.	PUNCT
ajlm-2900	339	1	2023;12(8	2023;12(8	NUM
ajlm-2900	339	2	):	):	PUNCT
ajlm-2900	339	3	1309	1309	NUM
ajlm-2900	339	4	.	.	PUNCT
ajlm-2900	340	1	https://doi.org/10.3390/antibiotics12081309	https://doi.org/10.3390/antibiotics12081309	PROPN
ajlm-2900	340	2	national	national	PROPN
ajlm-2900	340	3	institute	institute	PROPN
ajlm-2900	340	4	for	for	ADP
ajlm-2900	340	5	communicable	communicable	NOUN
ajlm-2900	340	6	diseases	disease	NOUN
ajlm-2900	340	7	.	.	PUNCT
ajlm-2900	341	1	communicable	communicable	NOUN
ajlm-2900	341	2	diseases	disease	NOUN
ajlm-2900	341	3	communique	communique	NOUN
ajlm-2900	341	4	,	,	PUNCT
ajlm-2900	341	5	august	august	PROPN
ajlm-2900	341	6	2022	2022	NUM
ajlm-2900	342	1	[	[	X
ajlm-2900	342	2	homepage	homepage	NOUN
ajlm-2900	342	3	on	on	ADP
ajlm-2900	342	4	the	the	DET
ajlm-2900	342	5	internet	internet	NOUN
ajlm-2900	342	6	]	]	PUNCT
ajlm-2900	342	7	.	.	PUNCT
ajlm-2900	343	1	2022	2022	NUM
ajlm-2900	344	1	[	[	X
ajlm-2900	344	2	cited	cite	VERB
ajlm-2900	344	3	2025	2025	NUM
ajlm-2900	344	4	feb	feb	NOUN
ajlm-2900	344	5	14	14	NUM
ajlm-2900	344	6	]	]	PUNCT
ajlm-2900	344	7	.	.	PUNCT
ajlm-2900	345	1	available	available	ADJ
ajlm-2900	345	2	from	from	ADP
ajlm-2900	345	3	:	:	PUNCT
ajlm-2900	345	4	https://www.nicd.ac.za/wp-content/uploads/2022/08/310822-nicd-monthly-communique-aug-nw5.pdf	https://www.nicd.ac.za/wp-content/uploads/2022/08/310822-nicd-monthly-communique-aug-nw5.pdf	NOUN
ajlm-2900	345	5	suleyman	suleyman	NOUN
ajlm-2900	345	6	g	g	NOUN
ajlm-2900	345	7	,	,	PUNCT
ajlm-2900	345	8	tibbetts	tibbett	VERB
ajlm-2900	345	9	r	r	NOUN
ajlm-2900	345	10	,	,	PUNCT
ajlm-2900	345	11	perri	perri	NOUN
ajlm-2900	345	12	mb	mb	NOUN
ajlm-2900	345	13	,	,	PUNCT
ajlm-2900	345	14	et	et	PROPN
ajlm-2900	345	15	al	al	PROPN
ajlm-2900	345	16	.	.	PUNCT
ajlm-2900	346	1	nosocomial	nosocomial	ADJ
ajlm-2900	346	2	outbreak	outbreak	NOUN
ajlm-2900	346	3	of	of	ADP
ajlm-2900	346	4	a	a	DET
ajlm-2900	346	5	novel	novel	ADJ
ajlm-2900	346	6	extended	extend	VERB
ajlm-2900	346	7	-	-	PUNCT
ajlm-2900	346	8	spectrum	spectrum	NOUN
ajlm-2900	346	9	β	β	NOUN
ajlm-2900	346	10	-	-	PUNCT
ajlm-2900	346	11	lactamase	lactamase	ADJ
ajlm-2900	346	12	salmonella	salmonella	NOUN
ajlm-2900	346	13	enterica	enterica	PROPN
ajlm-2900	346	14	serotype	serotype	PROPN
ajlm-2900	346	15	isangi	isangi	PROPN
ajlm-2900	346	16	among	among	ADP
ajlm-2900	346	17	surgical	surgical	ADJ
ajlm-2900	346	18	patients	patient	NOUN
ajlm-2900	346	19	.	.	PUNCT
ajlm-2900	347	1	infect	infect	VERB
ajlm-2900	347	2	control	control	PROPN
ajlm-2900	347	3	hosp	hosp	PROPN
ajlm-2900	347	4	epidemiol	epidemiol	PROPN
ajlm-2900	347	5	.	.	PUNCT
ajlm-2900	348	1	2016;37(8):954–961	2016;37(8):954–961	NUM
ajlm-2900	348	2	.	.	PROPN
ajlm-2900	348	3	https://doi.org/10.1017/ice.2016.85	https://doi.org/10.1017/ice.2016.85	PROPN
ajlm-2900	348	4	wadula	wadula	PROPN
ajlm-2900	348	5	j	j	PROPN
ajlm-2900	348	6	,	,	PUNCT
ajlm-2900	348	7	von	von	PROPN
ajlm-2900	348	8	ga	ga	PROPN
ajlm-2900	348	9	,	,	PUNCT
ajlm-2900	348	10	kilner	kilner	PROPN
ajlm-2900	348	11	d	d	PROPN
ajlm-2900	348	12	,	,	PUNCT
ajlm-2900	348	13	et	et	PROPN
ajlm-2900	348	14	al	al	PROPN
ajlm-2900	348	15	.	.	PUNCT
ajlm-2900	349	1	nosocomial	nosocomial	ADJ
ajlm-2900	349	2	outbreak	outbreak	NOUN
ajlm-2900	349	3	of	of	ADP
ajlm-2900	349	4	extended	extend	VERB
ajlm-2900	349	5	-	-	PUNCT
ajlm-2900	349	6	spectrum	spectrum	NOUN
ajlm-2900	349	7	beta	beta	NOUN
ajlm-2900	349	8	-	-	PUNCT
ajlm-2900	349	9	lactamase	lactamase	NOUN
ajlm-2900	349	10	-	-	PUNCT
ajlm-2900	349	11	producing	produce	VERB
ajlm-2900	349	12	salmonella	salmonella	NOUN
ajlm-2900	349	13	isangi	isangi	VERB
ajlm-2900	349	14	in	in	ADP
ajlm-2900	349	15	pediatric	pediatric	ADJ
ajlm-2900	349	16	wards	ward	NOUN
ajlm-2900	349	17	.	.	PUNCT
ajlm-2900	350	1	pediatr	pediatr	ADJ
ajlm-2900	350	2	infect	infect	VERB
ajlm-2900	350	3	dis	dis	PROPN
ajlm-2900	350	4	j.	j.	PROPN
ajlm-2900	350	5	2006;25(9):843–844	2006;25(9):843–844	PROPN
ajlm-2900	350	6	.	.	PUNCT
ajlm-2900	350	7	https://doi.org/10.1097/01.inf.0000233543.78070.a2	https://doi.org/10.1097/01.inf.0000233543.78070.a2	PROPN
ajlm-2900	350	8	de	de	PROPN
ajlm-2900	350	9	sousa	sousa	PROPN
ajlm-2900	350	10	violante	violante	PROPN
ajlm-2900	350	11	m	m	PROPN
ajlm-2900	350	12	,	,	PUNCT
ajlm-2900	350	13	podeur	podeur	NOUN
ajlm-2900	350	14	g	g	PROPN
ajlm-2900	350	15	,	,	PUNCT
ajlm-2900	350	16	michel	michel	PROPN
ajlm-2900	350	17	v	v	PROPN
ajlm-2900	350	18	,	,	PUNCT
ajlm-2900	350	19	et	et	PROPN
ajlm-2900	350	20	al	al	PROPN
ajlm-2900	350	21	.	.	PUNCT
ajlm-2900	351	1	a	a	DET
ajlm-2900	351	2	retrospective	retrospective	ADJ
ajlm-2900	351	3	and	and	CCONJ
ajlm-2900	351	4	regional	regional	ADJ
ajlm-2900	351	5	approach	approach	NOUN
ajlm-2900	351	6	assessing	assess	VERB
ajlm-2900	351	7	the	the	DET
ajlm-2900	351	8	genomic	genomic	ADJ
ajlm-2900	351	9	diversity	diversity	NOUN
ajlm-2900	351	10	of	of	ADP
ajlm-2900	351	11	salmonella	salmonella	PROPN
ajlm-2900	351	12	dublin	dublin	PROPN
ajlm-2900	351	13	.	.	PUNCT
ajlm-2900	352	1	nar	nar	NOUN
ajlm-2900	352	2	genom	genom	PROPN
ajlm-2900	352	3	bioinform	bioinform	NOUN
ajlm-2900	352	4	.	.	PUNCT
ajlm-2900	353	1	2022;4(3):lqac047	2022;4(3):lqac047	NUM
ajlm-2900	353	2	.	.	PUNCT
ajlm-2900	354	1	https://doi.org/10.1093/nargab/lqac047	https://doi.org/10.1093/nargab/lqac047	PROPN
ajlm-2900	354	2	velasquez	velasquez	PROPN
ajlm-2900	354	3	-	-	PUNCT
ajlm-2900	354	4	munoz	munoz	PROPN
ajlm-2900	354	5	a	a	PROPN
ajlm-2900	354	6	,	,	PUNCT
ajlm-2900	354	7	castro	castro	NOUN
ajlm-2900	354	8	-	-	PUNCT
ajlm-2900	354	9	vargas	vargas	NOUN
ajlm-2900	354	10	r	r	NOUN
ajlm-2900	354	11	,	,	PUNCT
ajlm-2900	354	12	cullens	cullens	PROPN
ajlm-2900	354	13	-	-	PUNCT
ajlm-2900	354	14	nobis	nobis	PROPN
ajlm-2900	354	15	fm	fm	PROPN
ajlm-2900	354	16	,	,	PUNCT
ajlm-2900	354	17	mani	mani	PROPN
ajlm-2900	354	18	r	r	PROPN
ajlm-2900	354	19	,	,	PUNCT
ajlm-2900	354	20	abuelo	abuelo	PROPN
ajlm-2900	354	21	a.	a.	PROPN
ajlm-2900	354	22	review	review	PROPN
ajlm-2900	354	23	:	:	PUNCT
ajlm-2900	354	24	salmonella	salmonella	PROPN
ajlm-2900	354	25	dublin	dublin	PROPN
ajlm-2900	354	26	in	in	ADP
ajlm-2900	354	27	dairy	dairy	NOUN
ajlm-2900	354	28	cattle	cattle	NOUN
ajlm-2900	354	29	.	.	PUNCT
ajlm-2900	355	1	front	front	ADJ
ajlm-2900	355	2	vet	vet	PROPN
ajlm-2900	355	3	sci	sci	PROPN
ajlm-2900	355	4	.	.	PUNCT
ajlm-2900	356	1	2023;10:1331767	2023;10:1331767	X
ajlm-2900	356	2	.	.	PUNCT
ajlm-2900	357	1	https://doi.org/10.3389/fvets.2023.1331767	https://doi.org/10.3389/fvets.2023.1331767	PROPN
ajlm-2900	357	2	mattock	mattock	PROPN
ajlm-2900	357	3	j	j	PROPN
ajlm-2900	357	4	,	,	PUNCT
ajlm-2900	357	5	chattaway	chattaway	PROPN
ajlm-2900	357	6	ma	ma	PROPN
ajlm-2900	357	7	,	,	PUNCT
ajlm-2900	357	8	hartman	hartman	PROPN
ajlm-2900	357	9	h	h	PROPN
ajlm-2900	357	10	,	,	PUNCT
ajlm-2900	357	11	et	et	PROPN
ajlm-2900	357	12	al	al	PROPN
ajlm-2900	357	13	.	.	PUNCT
ajlm-2900	358	1	a	a	DET
ajlm-2900	358	2	one	one	NUM
ajlm-2900	358	3	health	health	NOUN
ajlm-2900	358	4	perspective	perspective	NOUN
ajlm-2900	358	5	on	on	ADP
ajlm-2900	358	6	salmonella	salmonella	PROPN
ajlm-2900	358	7	enterica	enterica	PROPN
ajlm-2900	358	8	serovar	serovar	PROPN
ajlm-2900	358	9	infantis	infantis	PROPN
ajlm-2900	358	10	,	,	PUNCT
ajlm-2900	358	11	an	an	DET
ajlm-2900	358	12	emerging	emerge	VERB
ajlm-2900	358	13	human	human	ADJ
ajlm-2900	358	14	multidrug	multidrug	NOUN
ajlm-2900	358	15	-	-	PUNCT
ajlm-2900	358	16	resistant	resistant	ADJ
ajlm-2900	358	17	pathogen	pathogen	NOUN
ajlm-2900	358	18	.	.	PUNCT
ajlm-2900	359	1	emerg	emerg	PROPN
ajlm-2900	359	2	infect	infect	PROPN
ajlm-2900	359	3	dis	dis	PROPN
ajlm-2900	359	4	.	.	PUNCT
ajlm-2900	360	1	2024;30(4):701–710	2024;30(4):701–710	X
ajlm-2900	360	2	.	.	PUNCT
ajlm-2900	360	3	https://doi.org/10.3201/eid3004.231031	https://doi.org/10.3201/eid3004.231031	PUNCT
ajlm-2900	361	1	alba	alba	PROPN
ajlm-2900	361	2	p	p	NOUN
ajlm-2900	361	3	,	,	PUNCT
ajlm-2900	361	4	leekitcharoenphon	leekitcharoenphon	VERB
ajlm-2900	361	5	p	p	PROPN
ajlm-2900	361	6	,	,	PUNCT
ajlm-2900	361	7	carfora	carfora	NOUN
ajlm-2900	361	8	v	v	NOUN
ajlm-2900	361	9	,	,	PUNCT
ajlm-2900	361	10	et	et	PROPN
ajlm-2900	361	11	al	al	PROPN
ajlm-2900	361	12	.	.	PROPN
ajlm-2900	362	1	molecular	molecular	ADJ
ajlm-2900	362	2	epidemiology	epidemiology	NOUN
ajlm-2900	362	3	of	of	ADP
ajlm-2900	362	4	salmonella	salmonella	NOUN
ajlm-2900	362	5	infantis	infantis	NOUN
ajlm-2900	362	6	in	in	ADP
ajlm-2900	362	7	europe	europe	PROPN
ajlm-2900	362	8	:	:	PUNCT
ajlm-2900	363	1	insights	insight	NOUN
ajlm-2900	363	2	into	into	ADP
ajlm-2900	363	3	the	the	DET
ajlm-2900	363	4	success	success	NOUN
ajlm-2900	363	5	of	of	ADP
ajlm-2900	363	6	the	the	DET
ajlm-2900	363	7	bacterial	bacterial	ADJ
ajlm-2900	363	8	host	host	NOUN
ajlm-2900	363	9	and	and	CCONJ
ajlm-2900	363	10	its	its	PRON
ajlm-2900	363	11	parasitic	parasitic	ADJ
ajlm-2900	363	12	pesi	pesi	NOUN
ajlm-2900	363	13	-	-	PUNCT
ajlm-2900	363	14	like	like	ADJ
ajlm-2900	363	15	megaplasmid	megaplasmid	PROPN
ajlm-2900	363	16	.	.	PUNCT
ajlm-2900	364	1	microb	microb	PROPN
ajlm-2900	364	2	genom	genom	PROPN
ajlm-2900	364	3	.	.	PUNCT
ajlm-2900	365	1	2020;6(5):e000365	2020;6(5):e000365	NUM
ajlm-2900	365	2	.	.	PUNCT
ajlm-2900	366	1	https://doi.org/10.1099/mgen.0.000365	https://doi.org/10.1099/mgen.0.000365	PROPN
ajlm-2900	366	2	mattock	mattock	PROPN
ajlm-2900	366	3	j	j	PROPN
ajlm-2900	366	4	,	,	PUNCT
ajlm-2900	366	5	smith	smith	PROPN
ajlm-2900	366	6	am	am	PROPN
ajlm-2900	366	7	,	,	PUNCT
ajlm-2900	366	8	keddy	keddy	PROPN
ajlm-2900	366	9	kh	kh	PROPN
ajlm-2900	366	10	,	,	PUNCT
ajlm-2900	366	11	et	et	PROPN
ajlm-2900	366	12	al	al	PROPN
ajlm-2900	366	13	.	.	PUNCT
ajlm-2900	367	1	genetic	genetic	ADJ
ajlm-2900	367	2	characterization	characterization	NOUN
ajlm-2900	367	3	of	of	ADP
ajlm-2900	367	4	salmonella	salmonella	NOUN
ajlm-2900	367	5	infantis	infantis	NOUN
ajlm-2900	367	6	from	from	ADP
ajlm-2900	367	7	south	south	PROPN
ajlm-2900	367	8	africa	africa	PROPN
ajlm-2900	367	9	,	,	PUNCT
ajlm-2900	367	10	2004–2016	2004–2016	NUM
ajlm-2900	367	11	.	.	PUNCT
ajlm-2900	368	1	access	access	NOUN
ajlm-2900	368	2	microbiol	microbiol	PROPN
ajlm-2900	368	3	.	.	PUNCT
ajlm-2900	369	1	2022;4(7):acmi000371	2022;4(7):acmi000371	NUM
ajlm-2900	369	2	.	.	PUNCT
ajlm-2900	370	1	https://doi.org/10.1099/acmi.0.000371	https://doi.org/10.1099/acmi.0.000371	PROPN
ajlm-2900	370	2	brümmer	brümmer	PROPN
ajlm-2900	370	3	b	b	PROPN
ajlm-2900	370	4	,	,	PUNCT
ajlm-2900	370	5	smith	smith	PROPN
ajlm-2900	370	6	am	am	PROPN
ajlm-2900	370	7	,	,	PUNCT
ajlm-2900	370	8	modise	modise	PROPN
ajlm-2900	370	9	m	m	PROPN
ajlm-2900	370	10	,	,	PUNCT
ajlm-2900	370	11	et	et	PROPN
ajlm-2900	370	12	al	al	PROPN
ajlm-2900	370	13	.	.	PUNCT
ajlm-2900	371	1	whole	whole	ADJ
ajlm-2900	371	2	genome	genome	NOUN
ajlm-2900	371	3	sequencing	sequence	VERB
ajlm-2900	371	4	assisted	assist	VERB
ajlm-2900	371	5	outbreak	outbreak	NOUN
ajlm-2900	371	6	investigation	investigation	NOUN
ajlm-2900	371	7	of	of	ADP
ajlm-2900	371	8	salmonella	salmonella	NOUN
ajlm-2900	371	9	enteritidis	enteritidi	NOUN
ajlm-2900	371	10	,	,	PUNCT
ajlm-2900	371	11	at	at	ADP
ajlm-2900	371	12	a	a	DET
ajlm-2900	371	13	hospital	hospital	NOUN
ajlm-2900	371	14	in	in	ADP
ajlm-2900	371	15	south	south	PROPN
ajlm-2900	371	16	africa	africa	PROPN
ajlm-2900	371	17	,	,	PUNCT
ajlm-2900	371	18	september	september	PROPN
ajlm-2900	371	19	2022	2022	NUM
ajlm-2900	371	20	.	.	PUNCT
ajlm-2900	372	1	access	access	NOUN
ajlm-2900	372	2	microbiol	microbiol	PROPN
ajlm-2900	372	3	.	.	PUNCT
ajlm-2900	373	1	2024;6(11):000835.v000833	2024;6(11):000835.v000833	NOUN
ajlm-2900	373	2	.	.	PUNCT
ajlm-2900	374	1	https://doi.org/10.1099/acmi.0.000835.v3	https://doi.org/10.1099/acmi.0.000835.v3	NOUN