id	sid	tid	token	lemma	pos
ajlm-748	1	1	abstract	abstract	ADJ
ajlm-748	1	2	introduction	introduction	NOUN
ajlm-748	1	3	methods	method	NOUN
ajlm-748	1	4	results	result	VERB
ajlm-748	1	5	discussion	discussion	NOUN
ajlm-748	1	6	acknowledgements	acknowledgement	NOUN
ajlm-748	1	7	references	reference	NOUN
ajlm-748	1	8	about	about	ADP
ajlm-748	1	9	the	the	DET
ajlm-748	1	10	author(s	author(s	PROPN
ajlm-748	1	11	)	)	PUNCT
ajlm-748	1	12	allan	allan	PROPN
ajlm-748	1	13	n.	n.	PROPN
ajlm-748	1	14	njau	njau	PROPN
ajlm-748	1	15	department	department	PROPN
ajlm-748	1	16	of	of	ADP
ajlm-748	1	17	pathology	pathology	PROPN
ajlm-748	1	18	and	and	CCONJ
ajlm-748	1	19	laboratory	laboratory	NOUN
ajlm-748	1	20	medicine	medicine	NOUN
ajlm-748	1	21	,	,	PUNCT
ajlm-748	1	22	aga	aga	PROPN
ajlm-748	1	23	khan	khan	PROPN
ajlm-748	1	24	university	university	PROPN
ajlm-748	1	25	hospital	hospital	NOUN
ajlm-748	1	26	,	,	PUNCT
ajlm-748	1	27	nairobi	nairobi	PROPN
ajlm-748	1	28	,	,	PUNCT
ajlm-748	1	29	kenya	kenya	PROPN
ajlm-748	1	30	samuel	samuel	PROPN
ajlm-748	1	31	m.	m.	PROPN
ajlm-748	1	32	gakinya	gakinya	PROPN
ajlm-748	1	33	department	department	PROPN
ajlm-748	1	34	of	of	ADP
ajlm-748	1	35	pathology	pathology	PROPN
ajlm-748	1	36	and	and	CCONJ
ajlm-748	1	37	laboratory	laboratory	NOUN
ajlm-748	1	38	medicine	medicine	NOUN
ajlm-748	1	39	,	,	PUNCT
ajlm-748	1	40	aga	aga	PROPN
ajlm-748	1	41	khan	khan	PROPN
ajlm-748	1	42	university	university	PROPN
ajlm-748	1	43	hospital	hospital	NOUN
ajlm-748	1	44	,	,	PUNCT
ajlm-748	1	45	nairobi	nairobi	PROPN
ajlm-748	1	46	,	,	PUNCT
ajlm-748	1	47	kenya	kenya	PROPN
ajlm-748	1	48	shahin	shahin	PROPN
ajlm-748	1	49	sayed	sayed	PROPN
ajlm-748	1	50	department	department	PROPN
ajlm-748	1	51	of	of	ADP
ajlm-748	1	52	pathology	pathology	PROPN
ajlm-748	1	53	and	and	CCONJ
ajlm-748	1	54	laboratory	laboratory	NOUN
ajlm-748	1	55	medicine	medicine	NOUN
ajlm-748	1	56	,	,	PUNCT
ajlm-748	1	57	aga	aga	PROPN
ajlm-748	1	58	khan	khan	PROPN
ajlm-748	1	59	university	university	PROPN
ajlm-748	1	60	hospital	hospital	NOUN
ajlm-748	1	61	,	,	PUNCT
ajlm-748	1	62	nairobi	nairobi	PROPN
ajlm-748	1	63	,	,	PUNCT
ajlm-748	1	64	kenya	kenya	PROPN
ajlm-748	1	65	zahir	zahir	PROPN
ajlm-748	1	66	moloo	moloo	PROPN
ajlm-748	1	67	department	department	PROPN
ajlm-748	1	68	of	of	ADP
ajlm-748	1	69	pathology	pathology	PROPN
ajlm-748	1	70	and	and	CCONJ
ajlm-748	1	71	laboratory	laboratory	NOUN
ajlm-748	1	72	medicine	medicine	NOUN
ajlm-748	1	73	,	,	PUNCT
ajlm-748	1	74	aga	aga	PROPN
ajlm-748	1	75	khan	khan	PROPN
ajlm-748	1	76	university	university	PROPN
ajlm-748	1	77	hospital	hospital	NOUN
ajlm-748	1	78	,	,	PUNCT
ajlm-748	1	79	nairobi	nairobi	PROPN
ajlm-748	1	80	,	,	PUNCT
ajlm-748	1	81	kenya	kenya	PROPN
ajlm-748	1	82	citation	citation	PROPN
ajlm-748	1	83	njau	njau	PROPN
ajlm-748	1	84	an	an	PROPN
ajlm-748	1	85	,	,	PUNCT
ajlm-748	1	86	gakinya	gakinya	PROPN
ajlm-748	1	87	sm	sm	PROPN
ajlm-748	1	88	,	,	PUNCT
ajlm-748	1	89	sayed	say	VERB
ajlm-748	1	90	s	s	PROPN
ajlm-748	1	91	,	,	PUNCT
ajlm-748	1	92	moloo	moloo	PROPN
ajlm-748	1	93	z.	z.	PROPN
ajlm-748	1	94	xpert	xpert	PROPN
ajlm-748	1	95	®	®	PROPN
ajlm-748	1	96	mtb	mtb	PROPN
ajlm-748	1	97	/	/	SYM
ajlm-748	1	98	rif	rif	PROPN
ajlm-748	1	99	assay	assay	NOUN
ajlm-748	1	100	on	on	ADP
ajlm-748	1	101	formalin	formalin	NOUN
ajlm-748	1	102	-	-	PUNCT
ajlm-748	1	103	fixed	fix	VERB
ajlm-748	1	104	paraffin	paraffin	NOUN
ajlm-748	1	105	-	-	PUNCT
ajlm-748	1	106	embedded	embed	VERB
ajlm-748	1	107	tissues	tissue	NOUN
ajlm-748	1	108	in	in	ADP
ajlm-748	1	109	the	the	DET
ajlm-748	1	110	diagnosis	diagnosis	NOUN
ajlm-748	1	111	of	of	ADP
ajlm-748	1	112	extrapulmonary	extrapulmonary	ADJ
ajlm-748	1	113	tuberculosis	tuberculosis	NOUN
ajlm-748	1	114	.	.	PUNCT
ajlm-748	2	1	afr	afr	PROPN
ajlm-748	2	2	j	j	PROPN
ajlm-748	2	3	lab	lab	PROPN
ajlm-748	2	4	med	med	PROPN
ajlm-748	2	5	.	.	PUNCT
ajlm-748	2	6	2019;8(1	2019;8(1	NOUN
ajlm-748	2	7	)	)	PUNCT
ajlm-748	2	8	,	,	PUNCT
ajlm-748	2	9	a748	a748	PROPN
ajlm-748	2	10	.	.	PUNCT
ajlm-748	2	11	https://doi.org/10.4102/ajlm.v8i1.748	https://doi.org/10.4102/ajlm.v8i1.748	PROPN
ajlm-748	2	12	original	original	ADJ
ajlm-748	2	13	research	research	NOUN
ajlm-748	2	14	xpert	xpert	PROPN
ajlm-748	2	15	®	®	PROPN
ajlm-748	2	16	mtb	mtb	PROPN
ajlm-748	2	17	/	/	SYM
ajlm-748	2	18	rif	rif	PROPN
ajlm-748	2	19	assay	assay	NOUN
ajlm-748	2	20	on	on	ADP
ajlm-748	2	21	formalin	formalin	NOUN
ajlm-748	2	22	-	-	PUNCT
ajlm-748	2	23	fixed	fix	VERB
ajlm-748	2	24	paraffin	paraffin	NOUN
ajlm-748	2	25	-	-	PUNCT
ajlm-748	2	26	embedded	embed	VERB
ajlm-748	2	27	tissues	tissue	NOUN
ajlm-748	2	28	in	in	ADP
ajlm-748	2	29	the	the	DET
ajlm-748	2	30	diagnosis	diagnosis	NOUN
ajlm-748	2	31	of	of	ADP
ajlm-748	2	32	extrapulmonary	extrapulmonary	NOUN
ajlm-748	2	33	tuberculosis	tuberculosis	PROPN
ajlm-748	2	34	allan	allan	PROPN
ajlm-748	2	35	n.	n.	PROPN
ajlm-748	2	36	njau	njau	PROPN
ajlm-748	2	37	,	,	PUNCT
ajlm-748	2	38	samuel	samuel	PROPN
ajlm-748	2	39	m.	m.	PROPN
ajlm-748	2	40	gakinya	gakinya	PROPN
ajlm-748	2	41	,	,	PUNCT
ajlm-748	2	42	shahin	shahin	PROPN
ajlm-748	2	43	sayed	say	VERB
ajlm-748	2	44	,	,	PUNCT
ajlm-748	2	45	zahir	zahir	PROPN
ajlm-748	2	46	moloo	moloo	PROPN
ajlm-748	2	47	received	receive	VERB
ajlm-748	2	48	:	:	PUNCT
ajlm-748	2	49	31	31	NUM
ajlm-748	2	50	dec	dec	PROPN
ajlm-748	2	51	.	.	PROPN
ajlm-748	2	52	2017	2017	NUM
ajlm-748	2	53	;	;	PUNCT
ajlm-748	2	54	accepted	accept	VERB
ajlm-748	2	55	:	:	PUNCT
ajlm-748	2	56	08	08	NUM
ajlm-748	2	57	feb	feb	PROPN
ajlm-748	2	58	.	.	PROPN
ajlm-748	2	59	2019	2019	NUM
ajlm-748	2	60	;	;	PUNCT
ajlm-748	2	61	published	publish	VERB
ajlm-748	2	62	:	:	PUNCT
ajlm-748	2	63	18	18	NUM
ajlm-748	2	64	sept	sept	PROPN
ajlm-748	2	65	.	.	PROPN
ajlm-748	2	66	2019	2019	NUM
ajlm-748	3	1	copyright	copyright	NOUN
ajlm-748	3	2	:	:	PUNCT
ajlm-748	3	3	©	©	PROPN
ajlm-748	3	4	2019	2019	NUM
ajlm-748	3	5	.	.	PUNCT
ajlm-748	4	1	the	the	DET
ajlm-748	4	2	author(s	author(s	PROPN
ajlm-748	4	3	)	)	PUNCT
ajlm-748	4	4	.	.	PUNCT
ajlm-748	5	1	licensee	licensee	NOUN
ajlm-748	5	2	:	:	PUNCT
ajlm-748	5	3	aosis	aosis	NOUN
ajlm-748	5	4	.	.	PUNCT
ajlm-748	6	1	this	this	PRON
ajlm-748	6	2	is	be	AUX
ajlm-748	6	3	an	an	DET
ajlm-748	6	4	open	open	ADJ
ajlm-748	6	5	access	access	NOUN
ajlm-748	6	6	article	article	NOUN
ajlm-748	6	7	distributed	distribute	VERB
ajlm-748	6	8	under	under	ADP
ajlm-748	6	9	the	the	DET
ajlm-748	6	10	terms	term	NOUN
ajlm-748	6	11	of	of	ADP
ajlm-748	6	12	the	the	DET
ajlm-748	6	13	creative	creative	ADJ
ajlm-748	6	14	commons	common	NOUN
ajlm-748	6	15	attribution	attribution	NOUN
ajlm-748	6	16	license	license	NOUN
ajlm-748	6	17	,	,	PUNCT
ajlm-748	6	18	which	which	PRON
ajlm-748	6	19	permits	permit	VERB
ajlm-748	6	20	unrestricted	unrestricted	ADJ
ajlm-748	6	21	use	use	NOUN
ajlm-748	6	22	,	,	PUNCT
ajlm-748	6	23	distribution	distribution	NOUN
ajlm-748	6	24	,	,	PUNCT
ajlm-748	6	25	and	and	CCONJ
ajlm-748	6	26	reproduction	reproduction	NOUN
ajlm-748	6	27	in	in	ADP
ajlm-748	6	28	any	any	DET
ajlm-748	6	29	medium	medium	NOUN
ajlm-748	6	30	,	,	PUNCT
ajlm-748	6	31	provided	provide	VERB
ajlm-748	6	32	the	the	DET
ajlm-748	6	33	original	original	ADJ
ajlm-748	6	34	work	work	NOUN
ajlm-748	6	35	is	be	AUX
ajlm-748	6	36	properly	properly	ADV
ajlm-748	6	37	cited	cite	VERB
ajlm-748	6	38	.	.	PUNCT
ajlm-748	7	1	abstract	abstract	ADJ
ajlm-748	7	2	background	background	NOUN
ajlm-748	7	3	:	:	PUNCT
ajlm-748	7	4	diagnosis	diagnosis	NOUN
ajlm-748	7	5	of	of	ADP
ajlm-748	7	6	extrapulmonary	extrapulmonary	ADJ
ajlm-748	7	7	tuberculosis	tuberculosis	NOUN
ajlm-748	7	8	continues	continue	VERB
ajlm-748	7	9	to	to	PART
ajlm-748	7	10	be	be	AUX
ajlm-748	7	11	a	a	DET
ajlm-748	7	12	challenge	challenge	NOUN
ajlm-748	7	13	due	due	ADP
ajlm-748	7	14	to	to	ADP
ajlm-748	7	15	the	the	DET
ajlm-748	7	16	complexity	complexity	NOUN
ajlm-748	7	17	of	of	ADP
ajlm-748	7	18	the	the	DET
ajlm-748	7	19	causative	causative	ADJ
ajlm-748	7	20	organism	organism	NOUN
ajlm-748	7	21	and	and	CCONJ
ajlm-748	7	22	the	the	DET
ajlm-748	7	23	wide	wide	ADJ
ajlm-748	7	24	array	array	NOUN
ajlm-748	7	25	of	of	ADP
ajlm-748	7	26	pathologic	pathologic	ADJ
ajlm-748	7	27	features	feature	NOUN
ajlm-748	7	28	seen	see	VERB
ajlm-748	7	29	in	in	ADP
ajlm-748	7	30	this	this	DET
ajlm-748	7	31	infection	infection	NOUN
ajlm-748	7	32	.	.	PUNCT
ajlm-748	8	1	xpert	xpert	PROPN
ajlm-748	8	2	mtb	mtb	PROPN
ajlm-748	8	3	/	/	SYM
ajlm-748	8	4	rif	rif	PROPN
ajlm-748	8	5	can	can	AUX
ajlm-748	8	6	be	be	AUX
ajlm-748	8	7	used	use	VERB
ajlm-748	8	8	on	on	ADP
ajlm-748	8	9	fresh	fresh	ADJ
ajlm-748	8	10	or	or	CCONJ
ajlm-748	8	11	frozen	frozen	ADJ
ajlm-748	8	12	tissue	tissue	NOUN
ajlm-748	8	13	specimens	specimen	NOUN
ajlm-748	8	14	for	for	ADP
ajlm-748	8	15	diagnosis	diagnosis	NOUN
ajlm-748	8	16	of	of	ADP
ajlm-748	8	17	tuberculosis	tuberculosis	NOUN
ajlm-748	8	18	with	with	ADP
ajlm-748	8	19	good	good	ADJ
ajlm-748	8	20	results	result	NOUN
ajlm-748	8	21	.	.	PUNCT
ajlm-748	9	1	however	however	ADV
ajlm-748	9	2	,	,	PUNCT
ajlm-748	9	3	there	there	PRON
ajlm-748	9	4	is	be	VERB
ajlm-748	9	5	little	little	ADJ
ajlm-748	9	6	data	datum	NOUN
ajlm-748	9	7	on	on	ADP
ajlm-748	9	8	its	its	PRON
ajlm-748	9	9	use	use	NOUN
ajlm-748	9	10	with	with	ADP
ajlm-748	9	11	formalin	formalin	NOUN
ajlm-748	9	12	-	-	PUNCT
ajlm-748	9	13	fixed	fix	VERB
ajlm-748	9	14	paraffin	paraffin	NOUN
ajlm-748	9	15	-	-	PUNCT
ajlm-748	9	16	embedded	embed	VERB
ajlm-748	9	17	(	(	PUNCT
ajlm-748	9	18	ffpe	ffpe	NOUN
ajlm-748	9	19	)	)	PUNCT
ajlm-748	9	20	tissues	tissue	NOUN
ajlm-748	9	21	.	.	PUNCT
ajlm-748	10	1	objectives	objective	NOUN
ajlm-748	10	2	:	:	PUNCT
ajlm-748	10	3	the	the	DET
ajlm-748	10	4	aim	aim	NOUN
ajlm-748	10	5	of	of	ADP
ajlm-748	10	6	this	this	DET
ajlm-748	10	7	study	study	NOUN
ajlm-748	10	8	was	be	AUX
ajlm-748	10	9	to	to	PART
ajlm-748	10	10	demonstrate	demonstrate	VERB
ajlm-748	10	11	the	the	DET
ajlm-748	10	12	potential	potential	ADJ
ajlm-748	10	13	utility	utility	NOUN
ajlm-748	10	14	of	of	ADP
ajlm-748	10	15	xpert	xpert	PROPN
ajlm-748	10	16	mtb	mtb	PROPN
ajlm-748	10	17	/	/	SYM
ajlm-748	10	18	rif	rif	PROPN
ajlm-748	10	19	and	and	CCONJ
ajlm-748	10	20	to	to	PART
ajlm-748	10	21	compare	compare	VERB
ajlm-748	10	22	its	its	PRON
ajlm-748	10	23	performance	performance	NOUN
ajlm-748	10	24	to	to	PART
ajlm-748	10	25	ziehl	ziehl	VERB
ajlm-748	10	26	-	-	PUNCT
ajlm-748	10	27	neelsen	neelsen	NOUN
ajlm-748	10	28	staining	stain	VERB
ajlm-748	10	29	for	for	ADP
ajlm-748	10	30	the	the	DET
ajlm-748	10	31	detection	detection	NOUN
ajlm-748	10	32	of	of	ADP
ajlm-748	10	33	mycobacterium	mycobacterium	NOUN
ajlm-748	10	34	tuberculosis	tuberculosis	NOUN
ajlm-748	10	35	from	from	ADP
ajlm-748	10	36	ffpe	ffpe	ADJ
ajlm-748	10	37	tissues	tissue	NOUN
ajlm-748	10	38	using	use	VERB
ajlm-748	10	39	histological	histological	ADJ
ajlm-748	10	40	features	feature	NOUN
ajlm-748	10	41	from	from	ADP
ajlm-748	10	42	haematoxylin	haematoxylin	NOUN
ajlm-748	10	43	and	and	CCONJ
ajlm-748	10	44	eosin	eosin	NOUN
ajlm-748	10	45	staining	stain	VERB
ajlm-748	10	46	as	as	ADP
ajlm-748	10	47	the	the	DET
ajlm-748	10	48	gold	gold	NOUN
ajlm-748	10	49	standard	standard	NOUN
ajlm-748	10	50	.	.	PUNCT
ajlm-748	11	1	methods	method	NOUN
ajlm-748	11	2	:	:	PUNCT
ajlm-748	11	3	eighty	eighty	NUM
ajlm-748	11	4	randomly	randomly	ADV
ajlm-748	11	5	selected	select	VERB
ajlm-748	11	6	archival	archival	NOUN
ajlm-748	11	7	ffpe	ffpe	NOUN
ajlm-748	11	8	tissues	tissue	NOUN
ajlm-748	11	9	exhibiting	exhibit	VERB
ajlm-748	11	10	histological	histological	ADJ
ajlm-748	11	11	features	feature	NOUN
ajlm-748	11	12	of	of	ADP
ajlm-748	11	13	tuberculosis	tuberculosis	NOUN
ajlm-748	11	14	were	be	AUX
ajlm-748	11	15	included	include	VERB
ajlm-748	11	16	in	in	ADP
ajlm-748	11	17	the	the	DET
ajlm-748	11	18	study	study	NOUN
ajlm-748	11	19	.	.	PUNCT
ajlm-748	12	1	after	after	ADP
ajlm-748	12	2	deparaffinisation	deparaffinisation	NOUN
ajlm-748	12	3	and	and	CCONJ
ajlm-748	12	4	lysis	lysis	NOUN
ajlm-748	12	5	,	,	PUNCT
ajlm-748	12	6	all	all	DET
ajlm-748	12	7	the	the	DET
ajlm-748	12	8	tissue	tissue	NOUN
ajlm-748	12	9	specimens	specimen	NOUN
ajlm-748	12	10	were	be	AUX
ajlm-748	12	11	subjected	subject	VERB
ajlm-748	12	12	to	to	ADP
ajlm-748	12	13	the	the	DET
ajlm-748	12	14	xpert	xpert	PROPN
ajlm-748	12	15	®	®	PROPN
ajlm-748	12	16	mtb	mtb	PROPN
ajlm-748	12	17	/	/	SYM
ajlm-748	12	18	rif	rif	PROPN
ajlm-748	12	19	assay	assay	PROPN
ajlm-748	12	20	.	.	PUNCT
ajlm-748	13	1	the	the	DET
ajlm-748	13	2	outcome	outcome	NOUN
ajlm-748	13	3	measures	measure	NOUN
ajlm-748	13	4	were	be	AUX
ajlm-748	13	5	proportions	proportion	NOUN
ajlm-748	13	6	of	of	ADP
ajlm-748	13	7	positively	positively	ADV
ajlm-748	13	8	identified	identify	VERB
ajlm-748	13	9	cases	case	NOUN
ajlm-748	13	10	by	by	ADP
ajlm-748	13	11	each	each	DET
ajlm-748	13	12	test	test	NOUN
ajlm-748	13	13	.	.	PUNCT
ajlm-748	14	1	results	result	NOUN
ajlm-748	14	2	:	:	PUNCT
ajlm-748	14	3	using	use	VERB
ajlm-748	14	4	histology	histology	NOUN
ajlm-748	14	5	as	as	ADP
ajlm-748	14	6	the	the	DET
ajlm-748	14	7	gold	gold	NOUN
ajlm-748	14	8	standard	standard	NOUN
ajlm-748	14	9	,	,	PUNCT
ajlm-748	14	10	the	the	DET
ajlm-748	14	11	sensitivity	sensitivity	NOUN
ajlm-748	14	12	of	of	ADP
ajlm-748	14	13	ziehl	ziehl	PROPN
ajlm-748	14	14	-	-	PUNCT
ajlm-748	14	15	neelsen	neelsen	NOUN
ajlm-748	14	16	staining	stain	VERB
ajlm-748	14	17	was	be	AUX
ajlm-748	14	18	20.3	20.3	NUM
ajlm-748	14	19	%	%	NOUN
ajlm-748	14	20	(	(	PUNCT
ajlm-748	14	21	95	95	NUM
ajlm-748	14	22	%	%	NOUN
ajlm-748	14	23	confidence	confidence	NOUN
ajlm-748	14	24	interval	interval	NOUN
ajlm-748	14	25	:	:	PUNCT
ajlm-748	14	26	12	12	NUM
ajlm-748	14	27	%	%	NOUN
ajlm-748	14	28	–	–	PUNCT
ajlm-748	14	29	30.8	30.8	NUM
ajlm-748	14	30	%	%	NOUN
ajlm-748	14	31	)	)	PUNCT
ajlm-748	14	32	,	,	PUNCT
ajlm-748	14	33	and	and	CCONJ
ajlm-748	14	34	the	the	DET
ajlm-748	14	35	sensitivity	sensitivity	NOUN
ajlm-748	14	36	of	of	ADP
ajlm-748	14	37	the	the	DET
ajlm-748	14	38	xpert	xpert	PROPN
ajlm-748	14	39	®	®	PROPN
ajlm-748	14	40	mtb	mtb	PROPN
ajlm-748	14	41	/	/	SYM
ajlm-748	14	42	rif	rif	PROPN
ajlm-748	14	43	assay	assay	PROPN
ajlm-748	14	44	was	be	AUX
ajlm-748	14	45	53.2	53.2	NUM
ajlm-748	14	46	%	%	NOUN
ajlm-748	14	47	(	(	PUNCT
ajlm-748	14	48	95	95	NUM
ajlm-748	14	49	%	%	NOUN
ajlm-748	14	50	confidence	confidence	NOUN
ajlm-748	14	51	interval	interval	NOUN
ajlm-748	14	52	:	:	PUNCT
ajlm-748	14	53	41.6	41.6	NUM
ajlm-748	14	54	%	%	NOUN
ajlm-748	14	55	–	–	PUNCT
ajlm-748	14	56	64.9	64.9	NUM
ajlm-748	14	57	%	%	NOUN
ajlm-748	14	58	)	)	PUNCT
ajlm-748	14	59	;	;	PUNCT
ajlm-748	14	60	the	the	DET
ajlm-748	14	61	difference	difference	NOUN
ajlm-748	14	62	was	be	AUX
ajlm-748	14	63	statistically	statistically	ADV
ajlm-748	14	64	significant	significant	ADJ
ajlm-748	14	65	(	(	PUNCT
ajlm-748	14	66	p	p	X
ajlm-748	14	67	=	=	NOUN
ajlm-748	14	68	0.002	0.002	NUM
ajlm-748	14	69	)	)	PUNCT
ajlm-748	14	70	.	.	PUNCT
ajlm-748	15	1	none	none	NOUN
ajlm-748	15	2	of	of	ADP
ajlm-748	15	3	the	the	DET
ajlm-748	15	4	cases	case	NOUN
ajlm-748	15	5	tested	test	VERB
ajlm-748	15	6	positive	positive	ADJ
ajlm-748	15	7	for	for	ADP
ajlm-748	15	8	rifampicin	rifampicin	VERB
ajlm-748	15	9	resistance	resistance	NOUN
ajlm-748	15	10	.	.	PUNCT
ajlm-748	16	1	conclusion	conclusion	NOUN
ajlm-748	16	2	:	:	PUNCT
ajlm-748	16	3	with	with	ADP
ajlm-748	16	4	prior	prior	ADJ
ajlm-748	16	5	deparaffinisation	deparaffinisation	NOUN
ajlm-748	16	6	and	and	CCONJ
ajlm-748	16	7	lysis	lysis	NOUN
ajlm-748	16	8	,	,	PUNCT
ajlm-748	16	9	ffpe	ffpe	ADJ
ajlm-748	16	10	tissues	tissue	NOUN
ajlm-748	16	11	are	be	AUX
ajlm-748	16	12	amenable	amenable	ADJ
ajlm-748	16	13	to	to	ADP
ajlm-748	16	14	testing	testing	NOUN
ajlm-748	16	15	by	by	ADP
ajlm-748	16	16	xpert	xpert	PROPN
ajlm-748	16	17	®	®	PROPN
ajlm-748	16	18	mtb	mtb	PROPN
ajlm-748	16	19	/	/	SYM
ajlm-748	16	20	rif	rif	PROPN
ajlm-748	16	21	assay	assay	PROPN
ajlm-748	16	22	.	.	PUNCT
ajlm-748	17	1	a	a	DET
ajlm-748	17	2	validation	validation	NOUN
ajlm-748	17	3	study	study	NOUN
ajlm-748	17	4	to	to	PART
ajlm-748	17	5	determine	determine	VERB
ajlm-748	17	6	the	the	DET
ajlm-748	17	7	clinical	clinical	ADJ
ajlm-748	17	8	utility	utility	NOUN
ajlm-748	17	9	,	,	PUNCT
ajlm-748	17	10	analytical	analytical	ADJ
ajlm-748	17	11	optimisation	optimisation	NOUN
ajlm-748	17	12	and	and	CCONJ
ajlm-748	17	13	cost	cost	NOUN
ajlm-748	17	14	implications	implication	NOUN
ajlm-748	17	15	of	of	ADP
ajlm-748	17	16	this	this	DET
ajlm-748	17	17	assay	assay	NOUN
ajlm-748	17	18	for	for	ADP
ajlm-748	17	19	ffpe	ffpe	ADJ
ajlm-748	17	20	tissues	tissue	NOUN
ajlm-748	17	21	is	be	AUX
ajlm-748	17	22	recommended	recommend	VERB
ajlm-748	17	23	.	.	PUNCT
ajlm-748	18	1	keywords	keyword	NOUN
ajlm-748	18	2	:	:	PUNCT
ajlm-748	18	3	xpert	xpert	PROPN
ajlm-748	18	4	mtb	mtb	PROPN
ajlm-748	18	5	/	/	SYM
ajlm-748	18	6	rif	rif	PROPN
ajlm-748	18	7	;	;	PUNCT
ajlm-748	18	8	extrapulmonary	extrapulmonary	NOUN
ajlm-748	18	9	tuberculosis	tuberculosis	NOUN
ajlm-748	18	10	;	;	PUNCT
ajlm-748	18	11	formalin	formalin	NOUN
ajlm-748	18	12	-	-	PUNCT
ajlm-748	18	13	fixed	fix	VERB
ajlm-748	18	14	paraffin	paraffin	NOUN
ajlm-748	18	15	-	-	PUNCT
ajlm-748	18	16	embedded	embed	VERB
ajlm-748	18	17	tissues	tissue	NOUN
ajlm-748	18	18	;	;	PUNCT
ajlm-748	18	19	kenya	kenya	PROPN
ajlm-748	18	20	.	.	PUNCT
ajlm-748	19	1	introduction	introduction	NOUN
ajlm-748	19	2	globally	globally	ADV
ajlm-748	19	3	,	,	PUNCT
ajlm-748	19	4	extrapulmonary	extrapulmonary	ADJ
ajlm-748	19	5	tuberculosis	tuberculosis	NOUN
ajlm-748	19	6	(	(	PUNCT
ajlm-748	19	7	eptb	eptb	NOUN
ajlm-748	19	8	)	)	PUNCT
ajlm-748	19	9	represented	represent	VERB
ajlm-748	19	10	15	15	NUM
ajlm-748	19	11	%	%	NOUN
ajlm-748	19	12	of	of	ADP
ajlm-748	19	13	the	the	DET
ajlm-748	19	14	6.3	6.3	NUM
ajlm-748	19	15	million	million	NUM
ajlm-748	19	16	cases	case	NOUN
ajlm-748	19	17	and	and	CCONJ
ajlm-748	19	18	in	in	ADP
ajlm-748	19	19	africa	africa	PROPN
ajlm-748	19	20	16	16	NUM
ajlm-748	19	21	%	%	NOUN
ajlm-748	19	22	of	of	ADP
ajlm-748	19	23	the	the	DET
ajlm-748	19	24	1.2	1.2	NUM
ajlm-748	19	25	million	million	NUM
ajlm-748	19	26	cases	case	NOUN
ajlm-748	19	27	that	that	PRON
ajlm-748	19	28	were	be	AUX
ajlm-748	19	29	notified	notify	VERB
ajlm-748	19	30	in	in	ADP
ajlm-748	19	31	2016	2016	NUM
ajlm-748	19	32	.	.	PUNCT
ajlm-748	20	1	children	child	NOUN
ajlm-748	20	2	and	and	CCONJ
ajlm-748	20	3	the	the	DET
ajlm-748	20	4	immunosuppressed	immunosuppressed	ADJ
ajlm-748	20	5	population	population	NOUN
ajlm-748	20	6	have	have	AUX
ajlm-748	20	7	been	be	AUX
ajlm-748	20	8	reported	report	VERB
ajlm-748	20	9	to	to	PART
ajlm-748	20	10	be	be	AUX
ajlm-748	20	11	at	at	ADP
ajlm-748	20	12	a	a	DET
ajlm-748	20	13	higher	high	ADJ
ajlm-748	20	14	risk	risk	NOUN
ajlm-748	20	15	of	of	ADP
ajlm-748	20	16	eptb	eptb	NOUN
ajlm-748	20	17	than	than	ADP
ajlm-748	20	18	the	the	DET
ajlm-748	20	19	general	general	ADJ
ajlm-748	20	20	population.1,2	population.1,2	ADJ
ajlm-748	20	21	diagnosis	diagnosis	NOUN
ajlm-748	20	22	of	of	ADP
ajlm-748	20	23	eptb	eptb	NOUN
ajlm-748	20	24	involves	involve	VERB
ajlm-748	20	25	analysis	analysis	NOUN
ajlm-748	20	26	of	of	ADP
ajlm-748	20	27	fresh	fresh	ADJ
ajlm-748	20	28	or	or	CCONJ
ajlm-748	20	29	fixed	fix	VERB
ajlm-748	20	30	tissue	tissue	NOUN
ajlm-748	20	31	biopsies	biopsy	NOUN
ajlm-748	20	32	using	use	VERB
ajlm-748	20	33	culture	culture	NOUN
ajlm-748	20	34	,	,	PUNCT
ajlm-748	20	35	histological	histological	ADJ
ajlm-748	20	36	examination	examination	NOUN
ajlm-748	20	37	or	or	CCONJ
ajlm-748	20	38	molecular	molecular	ADJ
ajlm-748	20	39	tests	test	NOUN
ajlm-748	20	40	.	.	PUNCT
ajlm-748	21	1	culture	culture	NOUN
ajlm-748	21	2	is	be	AUX
ajlm-748	21	3	regarded	regard	VERB
ajlm-748	21	4	as	as	ADP
ajlm-748	21	5	the	the	DET
ajlm-748	21	6	gold	gold	NOUN
ajlm-748	21	7	standard	standard	NOUN
ajlm-748	21	8	;	;	PUNCT
ajlm-748	21	9	however	however	ADV
ajlm-748	21	10	,	,	PUNCT
ajlm-748	21	11	its	its	PRON
ajlm-748	21	12	main	main	ADJ
ajlm-748	21	13	disadvantages	disadvantage	NOUN
ajlm-748	21	14	are	be	AUX
ajlm-748	21	15	the	the	DET
ajlm-748	21	16	long	long	ADJ
ajlm-748	21	17	turnaround	turnaround	NOUN
ajlm-748	21	18	time	time	NOUN
ajlm-748	21	19	–	–	PUNCT
ajlm-748	21	20	up	up	ADP
ajlm-748	21	21	to	to	PART
ajlm-748	21	22	6	6	NUM
ajlm-748	21	23	weeks	week	NOUN
ajlm-748	21	24	–	–	PUNCT
ajlm-748	21	25	and	and	CCONJ
ajlm-748	21	26	the	the	DET
ajlm-748	21	27	fact	fact	NOUN
ajlm-748	21	28	that	that	SCONJ
ajlm-748	21	29	only	only	ADJ
ajlm-748	21	30	fresh	fresh	ADJ
ajlm-748	21	31	tissue	tissue	NOUN
ajlm-748	21	32	can	can	AUX
ajlm-748	21	33	be	be	AUX
ajlm-748	21	34	used	use	VERB
ajlm-748	21	35	.	.	PUNCT
ajlm-748	22	1	in	in	ADP
ajlm-748	22	2	addition	addition	NOUN
ajlm-748	22	3	,	,	PUNCT
ajlm-748	22	4	the	the	DET
ajlm-748	22	5	sensitivity	sensitivity	NOUN
ajlm-748	22	6	of	of	ADP
ajlm-748	22	7	cultures	culture	NOUN
ajlm-748	22	8	has	have	AUX
ajlm-748	22	9	been	be	AUX
ajlm-748	22	10	found	find	VERB
ajlm-748	22	11	to	to	PART
ajlm-748	22	12	be	be	AUX
ajlm-748	22	13	variable	variable	ADJ
ajlm-748	22	14	(	(	PUNCT
ajlm-748	22	15	0	0	NUM
ajlm-748	22	16	%	%	NOUN
ajlm-748	22	17	–	–	PUNCT
ajlm-748	22	18	80%).3	80%).3	NUM
ajlm-748	22	19	histological	histological	ADJ
ajlm-748	22	20	diagnosis	diagnosis	NOUN
ajlm-748	22	21	of	of	ADP
ajlm-748	22	22	tuberculosis	tuberculosis	NOUN
ajlm-748	22	23	on	on	ADP
ajlm-748	22	24	haematoxylin	haematoxylin	NOUN
ajlm-748	22	25	and	and	CCONJ
ajlm-748	22	26	eosin	eosin	NOUN
ajlm-748	22	27	(	(	PUNCT
ajlm-748	22	28	h&e	h&e	PROPN
ajlm-748	22	29	)	)	PUNCT
ajlm-748	22	30	stained	stain	VERB
ajlm-748	22	31	sections	section	NOUN
ajlm-748	22	32	usually	usually	ADV
ajlm-748	22	33	relies	rely	VERB
ajlm-748	22	34	on	on	ADP
ajlm-748	22	35	the	the	DET
ajlm-748	22	36	presence	presence	NOUN
ajlm-748	22	37	of	of	ADP
ajlm-748	22	38	classical	classical	ADJ
ajlm-748	22	39	necrotising	necrotise	VERB
ajlm-748	22	40	granulomas	granuloma	NOUN
ajlm-748	22	41	with	with	ADP
ajlm-748	22	42	langhans	langhan	NOUN
ajlm-748	22	43	giant	giant	ADJ
ajlm-748	22	44	cells	cell	NOUN
ajlm-748	22	45	.	.	PUNCT
ajlm-748	23	1	however	however	ADV
ajlm-748	23	2	,	,	PUNCT
ajlm-748	23	3	tuberculosis	tuberculosis	NOUN
ajlm-748	23	4	can	can	AUX
ajlm-748	23	5	exhibit	exhibit	VERB
ajlm-748	23	6	other	other	ADJ
ajlm-748	23	7	patterns	pattern	NOUN
ajlm-748	23	8	of	of	ADP
ajlm-748	23	9	inflammation	inflammation	NOUN
ajlm-748	23	10	such	such	ADJ
ajlm-748	23	11	as	as	ADP
ajlm-748	23	12	non	non	ADJ
ajlm-748	23	13	-	-	ADJ
ajlm-748	23	14	necrotising	necrotising	ADJ
ajlm-748	23	15	granulomatous	granulomatous	ADJ
ajlm-748	23	16	inflammation	inflammation	NOUN
ajlm-748	23	17	,	,	PUNCT
ajlm-748	23	18	non	non	ADJ
ajlm-748	23	19	-	-	ADJ
ajlm-748	23	20	specific	specific	ADJ
ajlm-748	23	21	chronic	chronic	ADJ
ajlm-748	23	22	inflammatory	inflammatory	ADJ
ajlm-748	23	23	processes	process	NOUN
ajlm-748	23	24	and	and	CCONJ
ajlm-748	23	25	suppurative	suppurative	ADJ
ajlm-748	23	26	inflammation.3,4,5	inflammation.3,4,5	NOUN
ajlm-748	23	27	in	in	ADP
ajlm-748	23	28	hiv	hiv	PROPN
ajlm-748	23	29	and	and	CCONJ
ajlm-748	23	30	tuberculosis	tuberculosis	PRON
ajlm-748	23	31	co	co	NOUN
ajlm-748	23	32	-	-	NOUN
ajlm-748	23	33	infection	infection	NOUN
ajlm-748	23	34	for	for	ADP
ajlm-748	23	35	example	example	NOUN
ajlm-748	23	36	,	,	PUNCT
ajlm-748	23	37	there	there	PRON
ajlm-748	23	38	may	may	AUX
ajlm-748	23	39	be	be	AUX
ajlm-748	23	40	both	both	PRON
ajlm-748	23	41	delay	delay	NOUN
ajlm-748	23	42	and	and	CCONJ
ajlm-748	23	43	poor	poor	ADJ
ajlm-748	23	44	or	or	CCONJ
ajlm-748	23	45	no	no	DET
ajlm-748	23	46	formation	formation	NOUN
ajlm-748	23	47	of	of	ADP
ajlm-748	23	48	granulomas.6	granulomas.6	PROPN
ajlm-748	23	49	in	in	ADP
ajlm-748	23	50	addition	addition	NOUN
ajlm-748	23	51	,	,	PUNCT
ajlm-748	23	52	other	other	ADJ
ajlm-748	23	53	agents	agent	NOUN
ajlm-748	23	54	and	and	CCONJ
ajlm-748	23	55	pathologic	pathologic	ADJ
ajlm-748	23	56	conditions	condition	NOUN
ajlm-748	23	57	can	can	AUX
ajlm-748	23	58	mimic	mimic	VERB
ajlm-748	23	59	tuberculosis	tuberculosis	NOUN
ajlm-748	23	60	.	.	PUNCT
ajlm-748	24	1	examples	example	NOUN
ajlm-748	24	2	include	include	VERB
ajlm-748	24	3	infections	infection	NOUN
ajlm-748	24	4	caused	cause	VERB
ajlm-748	24	5	by	by	ADP
ajlm-748	24	6	nontuberculous	nontuberculous	ADJ
ajlm-748	24	7	mycobacteria	mycobacterium	NOUN
ajlm-748	24	8	,	,	PUNCT
ajlm-748	24	9	bacteria	bacteria	NOUN
ajlm-748	24	10	other	other	ADJ
ajlm-748	24	11	than	than	ADP
ajlm-748	24	12	mycobacteria	mycobacterium	NOUN
ajlm-748	24	13	,	,	PUNCT
ajlm-748	24	14	fungi	fungus	NOUN
ajlm-748	24	15	,	,	PUNCT
ajlm-748	24	16	some	some	DET
ajlm-748	24	17	viruses	virus	NOUN
ajlm-748	24	18	and	and	CCONJ
ajlm-748	24	19	parasites	parasite	NOUN
ajlm-748	24	20	as	as	ADV
ajlm-748	24	21	well	well	ADV
ajlm-748	24	22	as	as	ADP
ajlm-748	24	23	non	non	ADJ
ajlm-748	24	24	-	-	ADJ
ajlm-748	24	25	infective	infective	ADJ
ajlm-748	24	26	causes	cause	NOUN
ajlm-748	24	27	such	such	ADJ
ajlm-748	24	28	as	as	ADP
ajlm-748	24	29	vasculitides	vasculitide	NOUN
ajlm-748	24	30	and	and	CCONJ
ajlm-748	24	31	crohn	crohn	PROPN
ajlm-748	24	32	’s	’s	PART
ajlm-748	25	1	disease.7,8	disease.7,8	NUM
ajlm-748	25	2	presence	presence	NOUN
ajlm-748	25	3	of	of	ADP
ajlm-748	25	4	acid	acid	NOUN
ajlm-748	25	5	-	-	PUNCT
ajlm-748	25	6	fast	fast	ADJ
ajlm-748	25	7	bacilli	bacilli	NOUN
ajlm-748	25	8	(	(	PUNCT
ajlm-748	25	9	afb	afb	PROPN
ajlm-748	25	10	)	)	PUNCT
ajlm-748	25	11	on	on	ADP
ajlm-748	25	12	ziehl	ziehl	NOUN
ajlm-748	25	13	-	-	PUNCT
ajlm-748	25	14	neelsen	neelsen	PROPN
ajlm-748	25	15	(	(	PUNCT
ajlm-748	25	16	zn	zn	NOUN
ajlm-748	25	17	)	)	PUNCT
ajlm-748	25	18	staining	stain	VERB
ajlm-748	25	19	is	be	AUX
ajlm-748	25	20	widely	widely	ADV
ajlm-748	25	21	utilised	utilise	VERB
ajlm-748	25	22	as	as	ADP
ajlm-748	25	23	a	a	DET
ajlm-748	25	24	confirmatory	confirmatory	NOUN
ajlm-748	25	25	test	test	NOUN
ajlm-748	25	26	for	for	ADP
ajlm-748	25	27	eptb	eptb	NOUN
ajlm-748	25	28	in	in	ADP
ajlm-748	25	29	a	a	DET
ajlm-748	25	30	wide	wide	ADJ
ajlm-748	25	31	spectrum	spectrum	NOUN
ajlm-748	25	32	of	of	ADP
ajlm-748	25	33	formalin	formalin	NOUN
ajlm-748	25	34	fixed	fix	VERB
ajlm-748	25	35	paraffin	paraffin	NOUN
ajlm-748	25	36	embedded	embed	VERB
ajlm-748	25	37	(	(	PUNCT
ajlm-748	25	38	ffpe	ffpe	NOUN
ajlm-748	25	39	)	)	PUNCT
ajlm-748	25	40	tissues	tissue	NOUN
ajlm-748	25	41	because	because	SCONJ
ajlm-748	25	42	it	it	PRON
ajlm-748	25	43	is	be	AUX
ajlm-748	25	44	quick	quick	ADJ
ajlm-748	25	45	and	and	CCONJ
ajlm-748	25	46	relatively	relatively	ADV
ajlm-748	25	47	cheap	cheap	ADJ
ajlm-748	25	48	;	;	PUNCT
ajlm-748	25	49	however	however	ADV
ajlm-748	25	50	,	,	PUNCT
ajlm-748	25	51	its	its	PRON
ajlm-748	25	52	drawback	drawback	NOUN
ajlm-748	25	53	is	be	AUX
ajlm-748	25	54	its	its	PRON
ajlm-748	25	55	low	low	ADJ
ajlm-748	25	56	sensitivity	sensitivity	NOUN
ajlm-748	25	57	(	(	PUNCT
ajlm-748	25	58	40%).3,9,10	40%).3,9,10	NUM
ajlm-748	25	59	both	both	PRON
ajlm-748	25	60	commercial	commercial	ADJ
ajlm-748	25	61	and	and	CCONJ
ajlm-748	25	62	in	in	ADP
ajlm-748	25	63	-	-	PUNCT
ajlm-748	25	64	house	house	NOUN
ajlm-748	25	65	polymerase	polymerase	NOUN
ajlm-748	25	66	chain	chain	NOUN
ajlm-748	25	67	reaction	reaction	NOUN
ajlm-748	25	68	(	(	PUNCT
ajlm-748	25	69	pcr	pcr	PROPN
ajlm-748	25	70	)	)	PUNCT
ajlm-748	25	71	based	base	VERB
ajlm-748	25	72	assays	assay	NOUN
ajlm-748	25	73	for	for	ADP
ajlm-748	25	74	tuberculosis	tuberculosis	NOUN
ajlm-748	25	75	have	have	AUX
ajlm-748	25	76	been	be	AUX
ajlm-748	25	77	used	use	VERB
ajlm-748	25	78	to	to	PART
ajlm-748	25	79	improve	improve	VERB
ajlm-748	25	80	detection	detection	NOUN
ajlm-748	25	81	rates	rate	NOUN
ajlm-748	25	82	of	of	ADP
ajlm-748	25	83	eptb	eptb	NOUN
ajlm-748	25	84	in	in	ADP
ajlm-748	25	85	ffpe	ffpe	ADJ
ajlm-748	25	86	tissues	tissue	NOUN
ajlm-748	25	87	and	and	CCONJ
ajlm-748	25	88	to	to	PART
ajlm-748	25	89	overcome	overcome	VERB
ajlm-748	25	90	some	some	PRON
ajlm-748	25	91	of	of	ADP
ajlm-748	25	92	the	the	DET
ajlm-748	25	93	limitations	limitation	NOUN
ajlm-748	25	94	encountered	encounter	VERB
ajlm-748	25	95	by	by	ADP
ajlm-748	25	96	the	the	DET
ajlm-748	25	97	aforementioned	aforementioned	ADJ
ajlm-748	25	98	tests.11,12	tests.11,12	NOUN
ajlm-748	25	99	polymerase	polymerase	NOUN
ajlm-748	25	100	chain	chain	NOUN
ajlm-748	25	101	reaction	reaction	NOUN
ajlm-748	25	102	based	base	VERB
ajlm-748	25	103	assays	assay	NOUN
ajlm-748	25	104	have	have	AUX
ajlm-748	25	105	been	be	AUX
ajlm-748	25	106	found	find	VERB
ajlm-748	25	107	to	to	PART
ajlm-748	25	108	be	be	AUX
ajlm-748	25	109	more	more	ADV
ajlm-748	25	110	powerful	powerful	ADJ
ajlm-748	25	111	in	in	ADP
ajlm-748	25	112	ruling	rule	VERB
ajlm-748	25	113	in	in	ADP
ajlm-748	25	114	rather	rather	ADV
ajlm-748	25	115	than	than	ADP
ajlm-748	25	116	ruling	rule	VERB
ajlm-748	25	117	out	out	ADP
ajlm-748	25	118	a	a	DET
ajlm-748	25	119	diagnosis	diagnosis	NOUN
ajlm-748	25	120	of	of	ADP
ajlm-748	25	121	tuberculosis.10	tuberculosis.10	NOUN
ajlm-748	25	122	a	a	DET
ajlm-748	25	123	major	major	ADJ
ajlm-748	25	124	reason	reason	NOUN
ajlm-748	25	125	for	for	ADP
ajlm-748	25	126	this	this	PRON
ajlm-748	25	127	is	be	AUX
ajlm-748	25	128	the	the	DET
ajlm-748	25	129	fact	fact	NOUN
ajlm-748	25	130	that	that	SCONJ
ajlm-748	25	131	most	most	ADJ
ajlm-748	25	132	eptb	eptb	ADJ
ajlm-748	25	133	tissue	tissue	NOUN
ajlm-748	25	134	specimens	specimen	NOUN
ajlm-748	25	135	tend	tend	VERB
ajlm-748	25	136	to	to	PART
ajlm-748	25	137	be	be	AUX
ajlm-748	25	138	paucibacillary	paucibacillary	ADJ
ajlm-748	25	139	.	.	PUNCT
ajlm-748	26	1	moreover	moreover	ADV
ajlm-748	26	2	,	,	PUNCT
ajlm-748	26	3	the	the	DET
ajlm-748	26	4	bacilli	bacilli	NOUN
ajlm-748	26	5	are	be	AUX
ajlm-748	26	6	usually	usually	ADV
ajlm-748	26	7	not	not	PART
ajlm-748	26	8	uniformly	uniformly	ADV
ajlm-748	26	9	distributed	distribute	VERB
ajlm-748	26	10	throughout	throughout	ADP
ajlm-748	26	11	the	the	DET
ajlm-748	26	12	specimens.12,13,14	specimens.12,13,14	NOUN
ajlm-748	26	13	the	the	DET
ajlm-748	26	14	xpert	xpert	PROPN
ajlm-748	26	15	®	®	PROPN
ajlm-748	26	16	mtb	mtb	PROPN
ajlm-748	26	17	/	/	SYM
ajlm-748	26	18	rif	rif	PROPN
ajlm-748	26	19	assay	assay	PROPN
ajlm-748	26	20	(	(	PUNCT
ajlm-748	26	21	cepheid	cepheid	PROPN
ajlm-748	26	22	,	,	PUNCT
ajlm-748	26	23	sunnyvale	sunnyvale	PROPN
ajlm-748	26	24	,	,	PUNCT
ajlm-748	26	25	california	california	PROPN
ajlm-748	26	26	,	,	PUNCT
ajlm-748	26	27	united	united	PROPN
ajlm-748	26	28	states	states	PROPN
ajlm-748	26	29	)	)	PUNCT
ajlm-748	26	30	is	be	AUX
ajlm-748	26	31	an	an	DET
ajlm-748	26	32	automated	automated	ADJ
ajlm-748	26	33	semi	semi	ADJ
ajlm-748	26	34	-	-	ADJ
ajlm-748	26	35	nested	nested	ADJ
ajlm-748	26	36	real	real	ADJ
ajlm-748	26	37	time	time	NOUN
ajlm-748	26	38	pcr	pcr	NOUN
ajlm-748	26	39	in	in	ADP
ajlm-748	26	40	which	which	PRON
ajlm-748	26	41	sample	sample	NOUN
ajlm-748	26	42	lysis	lysis	NOUN
ajlm-748	26	43	,	,	PUNCT
ajlm-748	26	44	dna	dna	PROPN
ajlm-748	26	45	extraction	extraction	NOUN
ajlm-748	26	46	,	,	PUNCT
ajlm-748	26	47	amplification	amplification	NOUN
ajlm-748	26	48	and	and	CCONJ
ajlm-748	26	49	detection	detection	NOUN
ajlm-748	26	50	takes	take	VERB
ajlm-748	26	51	place	place	NOUN
ajlm-748	26	52	within	within	ADP
ajlm-748	26	53	a	a	DET
ajlm-748	26	54	single	single	ADJ
ajlm-748	26	55	plastic	plastic	NOUN
ajlm-748	26	56	cartridge	cartridge	NOUN
ajlm-748	26	57	.	.	PUNCT
ajlm-748	27	1	the	the	DET
ajlm-748	27	2	assay	assay	NOUN
ajlm-748	27	3	detects	detect	NOUN
ajlm-748	27	4	the	the	DET
ajlm-748	27	5	presence	presence	NOUN
ajlm-748	27	6	of	of	ADP
ajlm-748	27	7	the	the	DET
ajlm-748	27	8	m.	m.	NOUN
ajlm-748	27	9	tuberculosis	tuberculosis	NOUN
ajlm-748	27	10	complex	complex	ADJ
ajlm-748	27	11	and	and	CCONJ
ajlm-748	27	12	rifampicin	rifampicin	VERB
ajlm-748	27	13	resistance	resistance	NOUN
ajlm-748	27	14	within	within	ADP
ajlm-748	27	15	2	2	NUM
ajlm-748	27	16	hours.15,16	hours.15,16	NOUN
ajlm-748	27	17	the	the	DET
ajlm-748	27	18	world	world	PROPN
ajlm-748	27	19	health	health	PROPN
ajlm-748	27	20	organization	organization	NOUN
ajlm-748	27	21	initially	initially	ADV
ajlm-748	27	22	endorsed	endorse	VERB
ajlm-748	27	23	the	the	DET
ajlm-748	27	24	assay	assay	NOUN
ajlm-748	27	25	in	in	ADP
ajlm-748	27	26	2010	2010	NUM
ajlm-748	27	27	as	as	ADP
ajlm-748	27	28	a	a	DET
ajlm-748	27	29	rapid	rapid	ADJ
ajlm-748	27	30	nucleic	nucleic	ADJ
ajlm-748	27	31	acid	acid	NOUN
ajlm-748	27	32	amplification	amplification	NOUN
ajlm-748	27	33	assay	assay	VERB
ajlm-748	27	34	that	that	PRON
ajlm-748	27	35	simultaneously	simultaneously	ADV
ajlm-748	27	36	detects	detect	VERB
ajlm-748	27	37	the	the	DET
ajlm-748	27	38	presence	presence	NOUN
ajlm-748	27	39	of	of	ADP
ajlm-748	27	40	the	the	DET
ajlm-748	27	41	m.	m.	NOUN
ajlm-748	27	42	tuberculosis	tuberculosis	NOUN
ajlm-748	27	43	complex	complex	ADJ
ajlm-748	27	44	and	and	CCONJ
ajlm-748	27	45	rifampicin	rifampicin	VERB
ajlm-748	27	46	resistance	resistance	NOUN
ajlm-748	27	47	in	in	ADP
ajlm-748	27	48	sputa	sputa	NOUN
ajlm-748	27	49	.	.	PUNCT
ajlm-748	28	1	however	however	ADV
ajlm-748	28	2	,	,	PUNCT
ajlm-748	28	3	a	a	DET
ajlm-748	28	4	wide	wide	ADJ
ajlm-748	28	5	spectrum	spectrum	NOUN
ajlm-748	28	6	of	of	ADP
ajlm-748	28	7	tissues	tissue	NOUN
ajlm-748	28	8	are	be	AUX
ajlm-748	28	9	now	now	ADV
ajlm-748	28	10	being	be	AUX
ajlm-748	28	11	analysed	analyse	VERB
ajlm-748	28	12	using	use	VERB
ajlm-748	28	13	the	the	DET
ajlm-748	28	14	xpert	xpert	PROPN
ajlm-748	28	15	®	®	PROPN
ajlm-748	28	16	mtb	mtb	PROPN
ajlm-748	28	17	/	/	SYM
ajlm-748	28	18	rif	rif	PROPN
ajlm-748	28	19	assay.17,18	assay.17,18	PROPN
ajlm-748	28	20	meta	meta	ADJ
ajlm-748	28	21	-	-	PUNCT
ajlm-748	28	22	analysis	analysis	NOUN
ajlm-748	28	23	done	do	VERB
ajlm-748	28	24	on	on	ADP
ajlm-748	28	25	the	the	DET
ajlm-748	28	26	accuracy	accuracy	NOUN
ajlm-748	28	27	of	of	ADP
ajlm-748	28	28	xpert	xpert	PROPN
ajlm-748	28	29	mtb	mtb	PROPN
ajlm-748	28	30	/	/	SYM
ajlm-748	28	31	rif	rif	PROPN
ajlm-748	28	32	in	in	ADP
ajlm-748	28	33	detecting	detect	VERB
ajlm-748	28	34	tuberculosis	tuberculosis	NOUN
ajlm-748	28	35	shows	show	VERB
ajlm-748	28	36	that	that	SCONJ
ajlm-748	28	37	the	the	DET
ajlm-748	28	38	median	median	NOUN
ajlm-748	28	39	pooled	pool	VERB
ajlm-748	28	40	sensitivity	sensitivity	NOUN
ajlm-748	28	41	and	and	CCONJ
ajlm-748	28	42	specificity	specificity	NOUN
ajlm-748	28	43	in	in	ADP
ajlm-748	28	44	lymph	lymph	NOUN
ajlm-748	28	45	nodes	node	NOUN
ajlm-748	28	46	was	be	AUX
ajlm-748	28	47	84.9	84.9	NUM
ajlm-748	28	48	%	%	NOUN
ajlm-748	28	49	and	and	CCONJ
ajlm-748	28	50	92.5	92.5	NUM
ajlm-748	28	51	%	%	NOUN
ajlm-748	28	52	,	,	PUNCT
ajlm-748	28	53	while	while	SCONJ
ajlm-748	28	54	in	in	ADP
ajlm-748	28	55	tissues	tissue	NOUN
ajlm-748	28	56	other	other	ADJ
ajlm-748	28	57	than	than	ADP
ajlm-748	28	58	lymph	lymph	NOUN
ajlm-748	28	59	nodes	node	NOUN
ajlm-748	28	60	,	,	PUNCT
ajlm-748	28	61	the	the	DET
ajlm-748	28	62	median	median	NOUN
ajlm-748	28	63	pooled	pool	VERB
ajlm-748	28	64	sensitivity	sensitivity	NOUN
ajlm-748	28	65	and	and	CCONJ
ajlm-748	28	66	specificity	specificity	NOUN
ajlm-748	28	67	was	be	AUX
ajlm-748	28	68	81.2	81.2	NUM
ajlm-748	28	69	%	%	NOUN
ajlm-748	28	70	and	and	CCONJ
ajlm-748	28	71	98.1%.19	98.1%.19	NOUN
ajlm-748	28	72	in	in	ADP
ajlm-748	28	73	these	these	DET
ajlm-748	28	74	studies	study	NOUN
ajlm-748	28	75	,	,	PUNCT
ajlm-748	28	76	the	the	DET
ajlm-748	28	77	nature	nature	NOUN
ajlm-748	28	78	of	of	ADP
ajlm-748	28	79	the	the	DET
ajlm-748	28	80	specimens	specimen	NOUN
ajlm-748	28	81	was	be	AUX
ajlm-748	28	82	reported	report	VERB
ajlm-748	28	83	to	to	PART
ajlm-748	28	84	be	be	AUX
ajlm-748	28	85	either	either	CCONJ
ajlm-748	28	86	fresh	fresh	ADJ
ajlm-748	28	87	or	or	CCONJ
ajlm-748	28	88	frozen	frozen	ADJ
ajlm-748	28	89	.	.	PUNCT
ajlm-748	29	1	a	a	DET
ajlm-748	29	2	zambian	zambian	ADJ
ajlm-748	29	3	study	study	NOUN
ajlm-748	29	4	published	publish	VERB
ajlm-748	29	5	in	in	ADP
ajlm-748	29	6	2017	2017	NUM
ajlm-748	29	7	by	by	ADP
ajlm-748	29	8	polepole	polepole	NOUN
ajlm-748	29	9	et	et	PROPN
ajlm-748	29	10	al	al	PROPN
ajlm-748	29	11	.	.	PROPN
ajlm-748	29	12	showed	show	VERB
ajlm-748	29	13	xpert	xpert	PROPN
ajlm-748	29	14	®	®	PROPN
ajlm-748	29	15	mtb	mtb	PROPN
ajlm-748	29	16	/	/	SYM
ajlm-748	29	17	rif	rif	PROPN
ajlm-748	29	18	assay	assay	NOUN
ajlm-748	29	19	to	to	PART
ajlm-748	29	20	be	be	AUX
ajlm-748	29	21	potentially	potentially	ADV
ajlm-748	29	22	useful	useful	ADJ
ajlm-748	29	23	for	for	ADP
ajlm-748	29	24	the	the	DET
ajlm-748	29	25	diagnosis	diagnosis	NOUN
ajlm-748	29	26	of	of	ADP
ajlm-748	29	27	tuberculosis	tuberculosis	NOUN
ajlm-748	29	28	in	in	ADP
ajlm-748	29	29	ffpe	ffpe	ADJ
ajlm-748	29	30	tissues	tissue	NOUN
ajlm-748	29	31	.	.	PUNCT
ajlm-748	30	1	however	however	ADV
ajlm-748	30	2	,	,	PUNCT
ajlm-748	30	3	the	the	DET
ajlm-748	30	4	sensitivity	sensitivity	NOUN
ajlm-748	30	5	was	be	AUX
ajlm-748	30	6	found	find	VERB
ajlm-748	30	7	to	to	PART
ajlm-748	30	8	be	be	AUX
ajlm-748	30	9	too	too	ADV
ajlm-748	30	10	low	low	ADJ
ajlm-748	30	11	.	.	PUNCT
ajlm-748	31	1	using	use	VERB
ajlm-748	31	2	histology	histology	NOUN
ajlm-748	31	3	as	as	ADP
ajlm-748	31	4	the	the	DET
ajlm-748	31	5	gold	gold	NOUN
ajlm-748	31	6	standard	standard	NOUN
ajlm-748	31	7	,	,	PUNCT
ajlm-748	31	8	the	the	DET
ajlm-748	31	9	accuracy	accuracy	NOUN
ajlm-748	31	10	of	of	ADP
ajlm-748	31	11	zn	zn	PROPN
ajlm-748	31	12	,	,	PUNCT
ajlm-748	31	13	xpert	xpert	PROPN
ajlm-748	31	14	mtb	mtb	PROPN
ajlm-748	31	15	/	/	SYM
ajlm-748	31	16	rif	rif	PROPN
ajlm-748	31	17	,	,	PUNCT
ajlm-748	31	18	and	and	CCONJ
ajlm-748	31	19	in	in	ADP
ajlm-748	31	20	-	-	PUNCT
ajlm-748	31	21	house	house	NOUN
ajlm-748	31	22	pcr	pcr	NOUN
ajlm-748	31	23	were	be	AUX
ajlm-748	31	24	assessed	assess	VERB
ajlm-748	31	25	in	in	ADP
ajlm-748	31	26	100	100	NUM
ajlm-748	31	27	ffpe	ffpe	ADJ
ajlm-748	31	28	tissues	tissue	NOUN
ajlm-748	31	29	.	.	PUNCT
ajlm-748	32	1	the	the	DET
ajlm-748	32	2	sensitivity	sensitivity	NOUN
ajlm-748	32	3	of	of	ADP
ajlm-748	32	4	xpert	xpert	PROPN
ajlm-748	32	5	mtb	mtb	PROPN
ajlm-748	32	6	/	/	SYM
ajlm-748	32	7	rif	rif	PROPN
ajlm-748	32	8	within	within	ADP
ajlm-748	32	9	lymph	lymph	NOUN
ajlm-748	32	10	nodes	node	NOUN
ajlm-748	32	11	and	and	CCONJ
ajlm-748	32	12	non	non	ADJ
ajlm-748	32	13	-	-	ADJ
ajlm-748	32	14	lymph	lymph	ADJ
ajlm-748	32	15	node	node	ADJ
ajlm-748	32	16	tissues	tissue	NOUN
ajlm-748	32	17	was	be	AUX
ajlm-748	32	18	30	30	NUM
ajlm-748	32	19	%	%	NOUN
ajlm-748	32	20	and	and	CCONJ
ajlm-748	32	21	35%.20	35%.20	NUM
ajlm-748	32	22	when	when	SCONJ
ajlm-748	32	23	dealing	deal	VERB
ajlm-748	32	24	with	with	ADP
ajlm-748	32	25	ffpe	ffpe	ADJ
ajlm-748	32	26	tissues	tissue	NOUN
ajlm-748	32	27	as	as	ADP
ajlm-748	32	28	the	the	DET
ajlm-748	32	29	starting	start	VERB
ajlm-748	32	30	specimen	speciman	NOUN
ajlm-748	32	31	on	on	ADP
ajlm-748	32	32	pcr	pcr	PROPN
ajlm-748	32	33	based	base	VERB
ajlm-748	32	34	assays	assay	NOUN
ajlm-748	32	35	,	,	PUNCT
ajlm-748	32	36	pretreatment	pretreatment	NOUN
ajlm-748	32	37	procedures	procedure	NOUN
ajlm-748	32	38	for	for	ADP
ajlm-748	32	39	deparaffinisation	deparaffinisation	NOUN
ajlm-748	32	40	and	and	CCONJ
ajlm-748	32	41	mitigation	mitigation	NOUN
ajlm-748	32	42	of	of	ADP
ajlm-748	32	43	the	the	DET
ajlm-748	32	44	effects	effect	NOUN
ajlm-748	32	45	of	of	ADP
ajlm-748	32	46	pcr	pcr	ADJ
ajlm-748	32	47	inhibitors	inhibitor	NOUN
ajlm-748	32	48	is	be	AUX
ajlm-748	32	49	necessary.21,22,23,24	necessary.21,22,23,24	VERB
ajlm-748	32	50	on	on	ADP
ajlm-748	32	51	the	the	DET
ajlm-748	32	52	other	other	ADJ
ajlm-748	32	53	hand	hand	NOUN
ajlm-748	32	54	,	,	PUNCT
ajlm-748	32	55	only	only	ADV
ajlm-748	32	56	minimal	minimal	ADJ
ajlm-748	32	57	bio	bio	ADJ
ajlm-748	32	58	-	-	PUNCT
ajlm-748	32	59	safety	safety	NOUN
ajlm-748	32	60	requirements	requirement	NOUN
ajlm-748	32	61	are	be	AUX
ajlm-748	32	62	needed	need	VERB
ajlm-748	32	63	for	for	ADP
ajlm-748	32	64	ffpe	ffpe	ADJ
ajlm-748	32	65	tissues	tissue	NOUN
ajlm-748	32	66	since	since	SCONJ
ajlm-748	32	67	they	they	PRON
ajlm-748	32	68	do	do	AUX
ajlm-748	32	69	not	not	PART
ajlm-748	32	70	contain	contain	VERB
ajlm-748	32	71	live	live	ADJ
ajlm-748	32	72	bacilli	bacilli	NOUN
ajlm-748	32	73	.	.	PUNCT
ajlm-748	33	1	the	the	DET
ajlm-748	33	2	xpert	xpert	PROPN
ajlm-748	33	3	mtb	mtb	PROPN
ajlm-748	33	4	/	/	SYM
ajlm-748	33	5	rif	rif	PROPN
ajlm-748	33	6	platform	platform	NOUN
ajlm-748	33	7	,	,	PUNCT
ajlm-748	33	8	when	when	SCONJ
ajlm-748	33	9	compared	compare	VERB
ajlm-748	33	10	to	to	ADP
ajlm-748	33	11	other	other	ADJ
ajlm-748	33	12	pcr	pcr	NOUN
ajlm-748	33	13	platforms	platform	NOUN
ajlm-748	33	14	,	,	PUNCT
ajlm-748	33	15	offers	offer	VERB
ajlm-748	33	16	additional	additional	ADJ
ajlm-748	33	17	benefits	benefit	NOUN
ajlm-748	33	18	that	that	PRON
ajlm-748	33	19	include	include	VERB
ajlm-748	33	20	ease	ease	NOUN
ajlm-748	33	21	of	of	ADP
ajlm-748	33	22	conducting	conduct	VERB
ajlm-748	33	23	the	the	DET
ajlm-748	33	24	test	test	NOUN
ajlm-748	33	25	and	and	CCONJ
ajlm-748	33	26	interpreting	interpret	VERB
ajlm-748	33	27	the	the	DET
ajlm-748	33	28	results	result	NOUN
ajlm-748	33	29	.	.	PUNCT
ajlm-748	34	1	in	in	ADP
ajlm-748	34	2	addition	addition	NOUN
ajlm-748	34	3	,	,	PUNCT
ajlm-748	34	4	only	only	ADV
ajlm-748	34	5	minimal	minimal	ADJ
ajlm-748	34	6	time	time	NOUN
ajlm-748	34	7	is	be	AUX
ajlm-748	34	8	required	require	VERB
ajlm-748	34	9	to	to	PART
ajlm-748	34	10	train	train	VERB
ajlm-748	34	11	laboratory	laboratory	NOUN
ajlm-748	34	12	staff	staff	NOUN
ajlm-748	34	13	who	who	PRON
ajlm-748	34	14	can	can	AUX
ajlm-748	34	15	operate	operate	VERB
ajlm-748	34	16	the	the	DET
ajlm-748	34	17	system.16,18	system.16,18	NOUN
ajlm-748	34	18	the	the	DET
ajlm-748	34	19	xpert	xpert	PROPN
ajlm-748	34	20	mtb	mtb	PROPN
ajlm-748	34	21	/	/	SYM
ajlm-748	34	22	rif	rif	PROPN
ajlm-748	34	23	technology	technology	NOUN
ajlm-748	34	24	is	be	AUX
ajlm-748	34	25	also	also	ADV
ajlm-748	34	26	widely	widely	ADV
ajlm-748	34	27	available	available	ADJ
ajlm-748	34	28	and	and	CCONJ
ajlm-748	34	29	accessible	accessible	ADJ
ajlm-748	34	30	as	as	SCONJ
ajlm-748	34	31	opposed	oppose	VERB
ajlm-748	34	32	to	to	ADP
ajlm-748	34	33	the	the	DET
ajlm-748	34	34	other	other	ADJ
ajlm-748	34	35	technologies	technology	NOUN
ajlm-748	34	36	that	that	PRON
ajlm-748	34	37	tend	tend	VERB
ajlm-748	34	38	to	to	PART
ajlm-748	34	39	be	be	AUX
ajlm-748	34	40	found	find	VERB
ajlm-748	34	41	mainly	mainly	ADV
ajlm-748	34	42	in	in	ADP
ajlm-748	34	43	reference	reference	NOUN
ajlm-748	34	44	laboratories	laboratory	NOUN
ajlm-748	34	45	.	.	PUNCT
ajlm-748	35	1	on	on	ADP
ajlm-748	35	2	many	many	ADJ
ajlm-748	35	3	occasions	occasion	NOUN
ajlm-748	35	4	,	,	PUNCT
ajlm-748	35	5	tissues	tissue	NOUN
ajlm-748	35	6	are	be	AUX
ajlm-748	35	7	submitted	submit	VERB
ajlm-748	35	8	to	to	ADP
ajlm-748	35	9	the	the	DET
ajlm-748	35	10	laboratory	laboratory	NOUN
ajlm-748	35	11	while	while	SCONJ
ajlm-748	35	12	fixed	fix	VERB
ajlm-748	35	13	in	in	ADP
ajlm-748	35	14	formalin	formalin	NOUN
ajlm-748	35	15	and	and	CCONJ
ajlm-748	35	16	with	with	ADP
ajlm-748	35	17	no	no	DET
ajlm-748	35	18	possibility	possibility	NOUN
ajlm-748	35	19	of	of	ADP
ajlm-748	35	20	culture	culture	NOUN
ajlm-748	35	21	.	.	PUNCT
ajlm-748	36	1	the	the	DET
ajlm-748	36	2	low	low	ADJ
ajlm-748	36	3	sensitivity	sensitivity	NOUN
ajlm-748	36	4	of	of	ADP
ajlm-748	36	5	zn	zn	PROPN
ajlm-748	36	6	often	often	ADV
ajlm-748	36	7	results	result	VERB
ajlm-748	36	8	in	in	ADP
ajlm-748	36	9	negative	negative	ADJ
ajlm-748	36	10	zn	zn	NOUN
ajlm-748	36	11	staining	staining	NOUN
ajlm-748	36	12	.	.	PUNCT
ajlm-748	37	1	not	not	PART
ajlm-748	37	2	infrequently	infrequently	ADV
ajlm-748	37	3	,	,	PUNCT
ajlm-748	37	4	tissues	tissue	NOUN
ajlm-748	37	5	also	also	ADV
ajlm-748	37	6	lack	lack	VERB
ajlm-748	37	7	the	the	DET
ajlm-748	37	8	typical	typical	ADJ
ajlm-748	37	9	histologic	histologic	ADJ
ajlm-748	37	10	features	feature	NOUN
ajlm-748	37	11	of	of	ADP
ajlm-748	37	12	tuberculosis	tuberculosis	NOUN
ajlm-748	37	13	.	.	PUNCT
ajlm-748	38	1	in	in	ADP
ajlm-748	38	2	these	these	DET
ajlm-748	38	3	situations	situation	NOUN
ajlm-748	38	4	,	,	PUNCT
ajlm-748	38	5	xpert	xpert	PROPN
ajlm-748	38	6	mtb	mtb	PROPN
ajlm-748	38	7	/	/	SYM
ajlm-748	38	8	rif	rif	PROPN
ajlm-748	38	9	can	can	AUX
ajlm-748	38	10	be	be	AUX
ajlm-748	38	11	a	a	DET
ajlm-748	38	12	useful	useful	ADJ
ajlm-748	38	13	adjunct	adjunct	ADJ
ajlm-748	38	14	or	or	CCONJ
ajlm-748	38	15	‘	'	PUNCT
ajlm-748	38	16	add	add	VERB
ajlm-748	38	17	-	-	PUNCT
ajlm-748	38	18	on	on	ADP
ajlm-748	38	19	’	'	PUNCT
ajlm-748	38	20	test	test	NOUN
ajlm-748	38	21	for	for	ADP
ajlm-748	38	22	eptb	eptb	NOUN
ajlm-748	38	23	.	.	PUNCT
ajlm-748	39	1	methods	method	NOUN
ajlm-748	39	2	ethical	ethical	ADJ
ajlm-748	39	3	considerations	consideration	NOUN
ajlm-748	39	4	the	the	DET
ajlm-748	39	5	health	health	NOUN
ajlm-748	39	6	research	research	NOUN
ajlm-748	39	7	ethics	ethic	NOUN
ajlm-748	39	8	committee	committee	PROPN
ajlm-748	39	9	,	,	PUNCT
ajlm-748	39	10	aga	aga	PROPN
ajlm-748	39	11	khan	khan	PROPN
ajlm-748	39	12	university	university	PROPN
ajlm-748	39	13	,	,	PUNCT
ajlm-748	39	14	provided	provide	VERB
ajlm-748	39	15	approval	approval	NOUN
ajlm-748	39	16	for	for	ADP
ajlm-748	39	17	the	the	DET
ajlm-748	39	18	study	study	NOUN
ajlm-748	39	19	[	[	X
ajlm-748	39	20	2014	2014	NUM
ajlm-748	39	21	/	/	SYM
ajlm-748	39	22	rec-56(v3	rec-56(v3	NOUN
ajlm-748	39	23	)	)	PUNCT
ajlm-748	39	24	]	]	PUNCT
ajlm-748	39	25	.	.	PUNCT
ajlm-748	40	1	study	study	NOUN
ajlm-748	40	2	design	design	NOUN
ajlm-748	40	3	and	and	CCONJ
ajlm-748	40	4	setting	set	VERB
ajlm-748	40	5	this	this	PRON
ajlm-748	40	6	was	be	AUX
ajlm-748	40	7	a	a	DET
ajlm-748	40	8	retrospective	retrospective	ADJ
ajlm-748	40	9	cross	cross	ADJ
ajlm-748	40	10	-	-	ADJ
ajlm-748	40	11	sectional	sectional	ADJ
ajlm-748	40	12	laboratory	laboratory	NOUN
ajlm-748	40	13	based	base	VERB
ajlm-748	40	14	study	study	NOUN
ajlm-748	40	15	conducted	conduct	VERB
ajlm-748	40	16	at	at	ADP
ajlm-748	40	17	the	the	DET
ajlm-748	40	18	aga	aga	PROPN
ajlm-748	40	19	khan	khan	PROPN
ajlm-748	40	20	university	university	PROPN
ajlm-748	40	21	hospital	hospital	NOUN
ajlm-748	40	22	,	,	PUNCT
ajlm-748	40	23	nairobi	nairobi	PROPN
ajlm-748	40	24	,	,	PUNCT
ajlm-748	40	25	in	in	ADP
ajlm-748	40	26	the	the	DET
ajlm-748	40	27	department	department	NOUN
ajlm-748	40	28	of	of	ADP
ajlm-748	40	29	pathology	pathology	NOUN
ajlm-748	40	30	and	and	CCONJ
ajlm-748	40	31	laboratory	laboratory	NOUN
ajlm-748	40	32	medicine	medicine	NOUN
ajlm-748	40	33	.	.	PUNCT
ajlm-748	41	1	the	the	DET
ajlm-748	41	2	laboratory	laboratory	NOUN
ajlm-748	41	3	receives	receive	VERB
ajlm-748	41	4	samples	sample	NOUN
ajlm-748	41	5	from	from	ADP
ajlm-748	41	6	the	the	DET
ajlm-748	41	7	university	university	NOUN
ajlm-748	41	8	hospital	hospital	NOUN
ajlm-748	41	9	as	as	ADV
ajlm-748	41	10	well	well	ADV
ajlm-748	41	11	as	as	ADP
ajlm-748	41	12	from	from	ADP
ajlm-748	41	13	other	other	ADJ
ajlm-748	41	14	county	county	NOUN
ajlm-748	41	15	and	and	CCONJ
ajlm-748	41	16	mission	mission	NOUN
ajlm-748	41	17	hospitals	hospital	NOUN
ajlm-748	41	18	within	within	ADP
ajlm-748	41	19	the	the	DET
ajlm-748	41	20	country	country	NOUN
ajlm-748	41	21	.	.	PUNCT
ajlm-748	42	1	only	only	ADV
ajlm-748	42	2	17	17	NUM
ajlm-748	42	3	%	%	NOUN
ajlm-748	42	4	of	of	ADP
ajlm-748	42	5	the	the	DET
ajlm-748	42	6	samples	sample	NOUN
ajlm-748	42	7	analysed	analyse	VERB
ajlm-748	42	8	in	in	ADP
ajlm-748	42	9	this	this	DET
ajlm-748	42	10	study	study	NOUN
ajlm-748	42	11	were	be	AUX
ajlm-748	42	12	from	from	ADP
ajlm-748	42	13	the	the	DET
ajlm-748	42	14	university	university	NOUN
ajlm-748	42	15	hospital	hospital	NOUN
ajlm-748	42	16	and	and	CCONJ
ajlm-748	42	17	these	these	PRON
ajlm-748	42	18	were	be	AUX
ajlm-748	42	19	fixed	fix	VERB
ajlm-748	42	20	in	in	ADP
ajlm-748	42	21	10	10	NUM
ajlm-748	42	22	%	%	NOUN
ajlm-748	42	23	neutral	neutral	ADJ
ajlm-748	42	24	buffered	buffer	VERB
ajlm-748	42	25	formalin	formalin	NOUN
ajlm-748	42	26	for	for	ADP
ajlm-748	42	27	6–12	6–12	PROPN
ajlm-748	42	28	h	h	NOUN
ajlm-748	42	29	prior	prior	ADV
ajlm-748	42	30	to	to	ADP
ajlm-748	42	31	processing	processing	NOUN
ajlm-748	42	32	.	.	PUNCT
ajlm-748	43	1	the	the	DET
ajlm-748	43	2	remaining	remain	VERB
ajlm-748	43	3	83	83	NUM
ajlm-748	43	4	%	%	NOUN
ajlm-748	43	5	were	be	AUX
ajlm-748	43	6	from	from	ADP
ajlm-748	43	7	the	the	DET
ajlm-748	43	8	other	other	ADJ
ajlm-748	43	9	hospitals	hospital	NOUN
ajlm-748	43	10	and	and	CCONJ
ajlm-748	43	11	the	the	DET
ajlm-748	43	12	dilution	dilution	NOUN
ajlm-748	43	13	of	of	ADP
ajlm-748	43	14	formalin	formalin	NOUN
ajlm-748	43	15	used	use	VERB
ajlm-748	43	16	and	and	CCONJ
ajlm-748	43	17	duration	duration	NOUN
ajlm-748	43	18	of	of	ADP
ajlm-748	43	19	fixation	fixation	NOUN
ajlm-748	43	20	could	could	AUX
ajlm-748	43	21	not	not	PART
ajlm-748	43	22	be	be	AUX
ajlm-748	43	23	determined	determine	VERB
ajlm-748	43	24	.	.	PUNCT
ajlm-748	44	1	the	the	DET
ajlm-748	44	2	patient	patient	NOUN
ajlm-748	44	3	’s	’s	PART
ajlm-748	44	4	biodata	biodata	NOUN
ajlm-748	44	5	,	,	PUNCT
ajlm-748	44	6	site	site	NOUN
ajlm-748	44	7	of	of	ADP
ajlm-748	44	8	biopsy	biopsy	NOUN
ajlm-748	44	9	and	and	CCONJ
ajlm-748	44	10	relevant	relevant	ADJ
ajlm-748	44	11	clinical	clinical	ADJ
ajlm-748	44	12	history	history	NOUN
ajlm-748	44	13	,	,	PUNCT
ajlm-748	44	14	when	when	SCONJ
ajlm-748	44	15	provided	provide	VERB
ajlm-748	44	16	,	,	PUNCT
ajlm-748	44	17	were	be	AUX
ajlm-748	44	18	obtained	obtain	VERB
ajlm-748	44	19	from	from	ADP
ajlm-748	44	20	the	the	DET
ajlm-748	44	21	laboratory	laboratory	NOUN
ajlm-748	44	22	specimen	speciman	NOUN
ajlm-748	44	23	inventory	inventory	NOUN
ajlm-748	44	24	and	and	CCONJ
ajlm-748	44	25	information	information	NOUN
ajlm-748	44	26	system	system	NOUN
ajlm-748	44	27	.	.	PUNCT
ajlm-748	45	1	sampling	sample	VERB
ajlm-748	45	2	the	the	DET
ajlm-748	45	3	study	study	NOUN
ajlm-748	45	4	included	include	VERB
ajlm-748	45	5	specimens	specimen	NOUN
ajlm-748	45	6	received	receive	VERB
ajlm-748	45	7	between	between	ADP
ajlm-748	45	8	january	january	PROPN
ajlm-748	45	9	and	and	CCONJ
ajlm-748	45	10	december	december	PROPN
ajlm-748	45	11	2014	2014	NUM
ajlm-748	45	12	and	and	CCONJ
ajlm-748	45	13	with	with	ADP
ajlm-748	45	14	a	a	DET
ajlm-748	45	15	diagnosis	diagnosis	NOUN
ajlm-748	45	16	of	of	ADP
ajlm-748	45	17	eptb	eptb	NOUN
ajlm-748	45	18	based	base	VERB
ajlm-748	45	19	on	on	ADP
ajlm-748	45	20	the	the	DET
ajlm-748	45	21	original	original	ADJ
ajlm-748	45	22	histology	histology	NOUN
ajlm-748	45	23	features	feature	VERB
ajlm-748	45	24	from	from	ADP
ajlm-748	45	25	h&e	h&e	PROPN
ajlm-748	45	26	staining	stain	VERB
ajlm-748	45	27	(	(	PUNCT
ajlm-748	45	28	necrotising	necrotise	VERB
ajlm-748	45	29	granulomatous	granulomatous	ADJ
ajlm-748	45	30	inflammation	inflammation	NOUN
ajlm-748	45	31	,	,	PUNCT
ajlm-748	45	32	non	non	ADJ
ajlm-748	45	33	-	-	ADJ
ajlm-748	45	34	necrotising	necrotising	ADJ
ajlm-748	45	35	granulomatous	granulomatous	ADJ
ajlm-748	45	36	inflammation	inflammation	NOUN
ajlm-748	45	37	,	,	PUNCT
ajlm-748	45	38	chronic	chronic	ADJ
ajlm-748	45	39	inflammation	inflammation	NOUN
ajlm-748	45	40	,	,	PUNCT
ajlm-748	45	41	necrotising	necrotise	VERB
ajlm-748	45	42	inflammation	inflammation	NOUN
ajlm-748	45	43	or	or	CCONJ
ajlm-748	45	44	suppurative	suppurative	ADJ
ajlm-748	45	45	inflammation	inflammation	NOUN
ajlm-748	45	46	)	)	PUNCT
ajlm-748	45	47	.	.	PUNCT
ajlm-748	46	1	the	the	DET
ajlm-748	46	2	specimens	specimen	NOUN
ajlm-748	46	3	were	be	AUX
ajlm-748	46	4	included	include	VERB
ajlm-748	46	5	irrespective	irrespective	ADV
ajlm-748	46	6	of	of	ADP
ajlm-748	46	7	their	their	PRON
ajlm-748	46	8	zn	zn	PROPN
ajlm-748	46	9	results	result	NOUN
ajlm-748	46	10	;	;	PUNCT
ajlm-748	46	11	however	however	ADV
ajlm-748	46	12	,	,	PUNCT
ajlm-748	46	13	specimens	specimen	NOUN
ajlm-748	46	14	in	in	ADP
ajlm-748	46	15	which	which	PRON
ajlm-748	46	16	a	a	DET
ajlm-748	46	17	diagnosis	diagnosis	NOUN
ajlm-748	46	18	of	of	ADP
ajlm-748	46	19	eptb	eptb	NOUN
ajlm-748	46	20	had	have	AUX
ajlm-748	46	21	been	be	AUX
ajlm-748	46	22	ruled	rule	VERB
ajlm-748	46	23	out	out	ADP
ajlm-748	46	24	,	,	PUNCT
ajlm-748	46	25	such	such	ADJ
ajlm-748	46	26	as	as	ADP
ajlm-748	46	27	cases	case	NOUN
ajlm-748	46	28	of	of	ADP
ajlm-748	46	29	fungal	fungal	ADJ
ajlm-748	46	30	infection	infection	NOUN
ajlm-748	46	31	,	,	PUNCT
ajlm-748	46	32	were	be	AUX
ajlm-748	46	33	not	not	PART
ajlm-748	46	34	considered	consider	VERB
ajlm-748	46	35	.	.	PUNCT
ajlm-748	47	1	out	out	ADP
ajlm-748	47	2	of	of	ADP
ajlm-748	47	3	the	the	DET
ajlm-748	47	4	132	132	NUM
ajlm-748	47	5	archived	archive	VERB
ajlm-748	47	6	ffpe	ffpe	NOUN
ajlm-748	47	7	tissue	tissue	NOUN
ajlm-748	47	8	blocks	block	NOUN
ajlm-748	47	9	that	that	PRON
ajlm-748	47	10	fit	fit	VERB
ajlm-748	47	11	the	the	DET
ajlm-748	47	12	above	above	ADJ
ajlm-748	47	13	description	description	NOUN
ajlm-748	47	14	,	,	PUNCT
ajlm-748	47	15	17	17	NUM
ajlm-748	47	16	were	be	AUX
ajlm-748	47	17	excluded	exclude	VERB
ajlm-748	47	18	because	because	SCONJ
ajlm-748	47	19	the	the	DET
ajlm-748	47	20	amount	amount	NOUN
ajlm-748	47	21	of	of	ADP
ajlm-748	47	22	tissue	tissue	NOUN
ajlm-748	47	23	preserved	preserve	VERB
ajlm-748	47	24	was	be	AUX
ajlm-748	47	25	too	too	ADV
ajlm-748	47	26	small	small	ADJ
ajlm-748	47	27	to	to	PART
ajlm-748	47	28	produce	produce	VERB
ajlm-748	47	29	an	an	DET
ajlm-748	47	30	adequate	adequate	ADJ
ajlm-748	47	31	sample	sample	NOUN
ajlm-748	47	32	for	for	ADP
ajlm-748	47	33	h&e	h&e	PROPN
ajlm-748	47	34	staining	staining	NOUN
ajlm-748	47	35	,	,	PUNCT
ajlm-748	47	36	zn	zn	NOUN
ajlm-748	47	37	staining	stain	VERB
ajlm-748	47	38	and	and	CCONJ
ajlm-748	47	39	the	the	DET
ajlm-748	47	40	xpert	xpert	PROPN
ajlm-748	47	41	®	®	PROPN
ajlm-748	47	42	mtb	mtb	PROPN
ajlm-748	47	43	/	/	SYM
ajlm-748	47	44	rif	rif	PROPN
ajlm-748	47	45	assay	assay	PROPN
ajlm-748	47	46	.	.	PUNCT
ajlm-748	48	1	out	out	ADP
ajlm-748	48	2	of	of	ADP
ajlm-748	48	3	the	the	DET
ajlm-748	48	4	115	115	NUM
ajlm-748	48	5	remaining	remain	VERB
ajlm-748	48	6	blocks	block	NOUN
ajlm-748	48	7	,	,	PUNCT
ajlm-748	48	8	80	80	NUM
ajlm-748	48	9	ffpe	ffpe	NOUN
ajlm-748	48	10	blocks	block	NOUN
ajlm-748	48	11	were	be	AUX
ajlm-748	48	12	randomly	randomly	ADV
ajlm-748	48	13	selected	select	VERB
ajlm-748	48	14	for	for	ADP
ajlm-748	48	15	analysis	analysis	NOUN
ajlm-748	48	16	.	.	PUNCT
ajlm-748	49	1	laboratory	laboratory	NOUN
ajlm-748	49	2	procedures	procedure	NOUN
ajlm-748	49	3	from	from	ADP
ajlm-748	49	4	each	each	DET
ajlm-748	49	5	ffpe	ffpe	NOUN
ajlm-748	49	6	block	block	NOUN
ajlm-748	49	7	,	,	PUNCT
ajlm-748	49	8	h&e	h&e	PROPN
ajlm-748	49	9	and	and	CCONJ
ajlm-748	49	10	zn	zn	PROPN
ajlm-748	49	11	stained	stain	VERB
ajlm-748	49	12	slides	slide	NOUN
ajlm-748	49	13	were	be	AUX
ajlm-748	49	14	prepared	prepare	VERB
ajlm-748	49	15	on	on	ADP
ajlm-748	49	16	3	3	NUM
ajlm-748	49	17	µm	µm	ADP
ajlm-748	49	18	thick	thick	ADJ
ajlm-748	49	19	sections	section	NOUN
ajlm-748	49	20	.	.	PUNCT
ajlm-748	50	1	the	the	DET
ajlm-748	50	2	histological	histological	ADJ
ajlm-748	50	3	pattern	pattern	NOUN
ajlm-748	50	4	of	of	ADP
ajlm-748	50	5	inflammation	inflammation	NOUN
ajlm-748	50	6	for	for	ADP
ajlm-748	50	7	each	each	DET
ajlm-748	50	8	case	case	NOUN
ajlm-748	50	9	was	be	AUX
ajlm-748	50	10	recorded	record	VERB
ajlm-748	50	11	.	.	PUNCT
ajlm-748	51	1	the	the	DET
ajlm-748	51	2	zn	zn	PROPN
ajlm-748	51	3	stained	stain	VERB
ajlm-748	51	4	slides	slide	NOUN
ajlm-748	51	5	were	be	AUX
ajlm-748	51	6	screened	screen	VERB
ajlm-748	51	7	for	for	ADP
ajlm-748	51	8	afb	afb	NOUN
ajlm-748	51	9	under	under	ADP
ajlm-748	51	10	oil	oil	NOUN
ajlm-748	51	11	at	at	ADP
ajlm-748	51	12	×1000	×1000	NOUN
ajlm-748	51	13	magnification	magnification	NOUN
ajlm-748	51	14	and	and	CCONJ
ajlm-748	51	15	the	the	DET
ajlm-748	51	16	results	result	NOUN
ajlm-748	51	17	recorded	record	VERB
ajlm-748	51	18	as	as	ADP
ajlm-748	51	19	either	either	CCONJ
ajlm-748	51	20	positive	positive	ADJ
ajlm-748	51	21	or	or	CCONJ
ajlm-748	51	22	negative	negative	ADJ
ajlm-748	51	23	.	.	PUNCT
ajlm-748	52	1	the	the	DET
ajlm-748	52	2	principal	principal	ADJ
ajlm-748	52	3	investigator	investigator	NOUN
ajlm-748	52	4	first	first	ADV
ajlm-748	52	5	screened	screen	VERB
ajlm-748	52	6	all	all	DET
ajlm-748	52	7	the	the	DET
ajlm-748	52	8	slides	slide	NOUN
ajlm-748	52	9	and	and	CCONJ
ajlm-748	52	10	then	then	ADV
ajlm-748	52	11	every	every	DET
ajlm-748	52	12	fifth	fifth	ADJ
ajlm-748	52	13	case	case	NOUN
ajlm-748	52	14	had	have	VERB
ajlm-748	52	15	the	the	DET
ajlm-748	52	16	h&e	h&e	PROPN
ajlm-748	52	17	and	and	CCONJ
ajlm-748	52	18	zn	zn	PROPN
ajlm-748	52	19	stained	stain	VERB
ajlm-748	52	20	slide	slide	NOUN
ajlm-748	52	21	screened	screen	VERB
ajlm-748	52	22	by	by	ADP
ajlm-748	52	23	a	a	DET
ajlm-748	52	24	second	second	ADJ
ajlm-748	52	25	pathologist	pathologist	NOUN
ajlm-748	52	26	.	.	PUNCT
ajlm-748	53	1	for	for	ADP
ajlm-748	53	2	the	the	DET
ajlm-748	53	3	xpert	xpert	PROPN
ajlm-748	53	4	®	®	PROPN
ajlm-748	53	5	mtb	mtb	PROPN
ajlm-748	53	6	/	/	SYM
ajlm-748	53	7	rif	rif	PROPN
ajlm-748	53	8	assay	assay	PROPN
ajlm-748	53	9	,	,	PUNCT
ajlm-748	53	10	up	up	ADP
ajlm-748	53	11	to	to	PART
ajlm-748	53	12	10	10	NUM
ajlm-748	53	13	sections	section	NOUN
ajlm-748	53	14	of	of	ADP
ajlm-748	53	15	10	10	NUM
ajlm-748	53	16	µm	µm	NOUN
ajlm-748	53	17	thickness	thickness	NOUN
ajlm-748	53	18	were	be	AUX
ajlm-748	53	19	cut	cut	VERB
ajlm-748	53	20	from	from	ADP
ajlm-748	53	21	the	the	DET
ajlm-748	53	22	ffpe	ffpe	NOUN
ajlm-748	53	23	blocks	block	NOUN
ajlm-748	53	24	and	and	CCONJ
ajlm-748	53	25	the	the	DET
ajlm-748	53	26	scrolls	scroll	NOUN
ajlm-748	53	27	placed	place	VERB
ajlm-748	53	28	in	in	ADP
ajlm-748	53	29	a	a	DET
ajlm-748	53	30	1.5	1.5	NUM
ajlm-748	53	31	ml	ml	NOUN
ajlm-748	53	32	micro	micro	NOUN
ajlm-748	53	33	-	-	NOUN
ajlm-748	53	34	centrifuge	centrifuge	ADJ
ajlm-748	53	35	tube	tube	NOUN
ajlm-748	53	36	.	.	PUNCT
ajlm-748	54	1	deparaffinisation	deparaffinisation	NOUN
ajlm-748	54	2	was	be	AUX
ajlm-748	54	3	done	do	VERB
ajlm-748	54	4	using	use	VERB
ajlm-748	54	5	a	a	DET
ajlm-748	54	6	modified	modified	ADJ
ajlm-748	54	7	xylene	xylene	NOUN
ajlm-748	54	8	method	method	NOUN
ajlm-748	54	9	,	,	PUNCT
ajlm-748	54	10	which	which	PRON
ajlm-748	54	11	involved	involve	VERB
ajlm-748	54	12	two	two	NUM
ajlm-748	54	13	washes	wash	NOUN
ajlm-748	54	14	in	in	ADP
ajlm-748	54	15	1	1	NUM
ajlm-748	54	16	ml	ml	NOUN
ajlm-748	54	17	of	of	ADP
ajlm-748	54	18	xylene	xylene	NOUN
ajlm-748	54	19	,	,	PUNCT
ajlm-748	54	20	two	two	NUM
ajlm-748	54	21	washes	wash	NOUN
ajlm-748	54	22	in	in	ADP
ajlm-748	54	23	1	1	NUM
ajlm-748	54	24	ml	ml	NOUN
ajlm-748	54	25	of	of	ADP
ajlm-748	54	26	absolute	absolute	ADJ
ajlm-748	54	27	ethanol	ethanol	NOUN
ajlm-748	54	28	followed	follow	VERB
ajlm-748	54	29	by	by	ADP
ajlm-748	54	30	two	two	NUM
ajlm-748	54	31	rinses	rinse	NOUN
ajlm-748	54	32	in	in	ADP
ajlm-748	54	33	1	1	NUM
ajlm-748	54	34	ml	ml	NOUN
ajlm-748	54	35	of	of	ADP
ajlm-748	54	36	phosphate	phosphate	ADJ
ajlm-748	54	37	buffered	buffer	VERB
ajlm-748	54	38	saline	saline	NOUN
ajlm-748	54	39	.	.	PUNCT
ajlm-748	55	1	lysis	lysis	NOUN
ajlm-748	55	2	of	of	ADP
ajlm-748	55	3	the	the	DET
ajlm-748	55	4	tissue	tissue	NOUN
ajlm-748	55	5	fragments	fragment	NOUN
ajlm-748	55	6	followed	follow	VERB
ajlm-748	55	7	with	with	ADP
ajlm-748	55	8	resuspension	resuspension	NOUN
ajlm-748	55	9	of	of	ADP
ajlm-748	55	10	the	the	DET
ajlm-748	55	11	tissue	tissue	NOUN
ajlm-748	55	12	fragments	fragment	NOUN
ajlm-748	55	13	in	in	ADP
ajlm-748	55	14	1	1	NUM
ajlm-748	55	15	ml	ml	NOUN
ajlm-748	55	16	of	of	ADP
ajlm-748	55	17	phosphate	phosphate	ADJ
ajlm-748	55	18	buffered	buffer	VERB
ajlm-748	55	19	saline	saline	NOUN
ajlm-748	55	20	and	and	CCONJ
ajlm-748	55	21	the	the	DET
ajlm-748	55	22	addition	addition	NOUN
ajlm-748	55	23	of	of	ADP
ajlm-748	55	24	20	20	NUM
ajlm-748	55	25	µl	µl	NOUN
ajlm-748	55	26	of	of	ADP
ajlm-748	55	27	qiagen	qiagen	PROPN
ajlm-748	55	28	proteinase	proteinase	PROPN
ajlm-748	55	29	k	k	PROPN
ajlm-748	55	30	,	,	PUNCT
ajlm-748	55	31	then	then	ADV
ajlm-748	55	32	the	the	DET
ajlm-748	55	33	mixture	mixture	NOUN
ajlm-748	55	34	was	be	AUX
ajlm-748	55	35	incubated	incubate	VERB
ajlm-748	55	36	at	at	ADP
ajlm-748	55	37	56	56	NUM
ajlm-748	55	38	°	°	NOUN
ajlm-748	55	39	c	c	NOUN
ajlm-748	55	40	for	for	ADP
ajlm-748	55	41	12	12	NUM
ajlm-748	55	42	hours	hour	NOUN
ajlm-748	55	43	.	.	PUNCT
ajlm-748	56	1	if	if	SCONJ
ajlm-748	56	2	there	there	PRON
ajlm-748	56	3	were	be	VERB
ajlm-748	56	4	tissue	tissue	NOUN
ajlm-748	56	5	fragments	fragment	NOUN
ajlm-748	56	6	visible	visible	ADJ
ajlm-748	56	7	on	on	ADP
ajlm-748	56	8	inspection	inspection	NOUN
ajlm-748	56	9	after	after	ADP
ajlm-748	56	10	the	the	DET
ajlm-748	56	11	initial	initial	ADJ
ajlm-748	56	12	incubation	incubation	NOUN
ajlm-748	56	13	,	,	PUNCT
ajlm-748	56	14	another	another	DET
ajlm-748	56	15	20	20	NUM
ajlm-748	56	16	µl	µl	NOUN
ajlm-748	56	17	of	of	ADP
ajlm-748	56	18	proteinase	proteinase	NOUN
ajlm-748	56	19	k	k	PROPN
ajlm-748	56	20	was	be	AUX
ajlm-748	56	21	added	add	VERB
ajlm-748	56	22	and	and	CCONJ
ajlm-748	56	23	re	re	VERB
ajlm-748	56	24	-	-	VERB
ajlm-748	56	25	incubated	incubate	VERB
ajlm-748	56	26	for	for	ADP
ajlm-748	56	27	1	1	NUM
ajlm-748	56	28	or	or	CCONJ
ajlm-748	56	29	2	2	NUM
ajlm-748	56	30	h.	h.	NOUN
ajlm-748	56	31	after	after	SCONJ
ajlm-748	56	32	complete	complete	ADJ
ajlm-748	56	33	lysis	lysis	NOUN
ajlm-748	56	34	was	be	AUX
ajlm-748	56	35	achieved	achieve	VERB
ajlm-748	56	36	,	,	PUNCT
ajlm-748	56	37	the	the	DET
ajlm-748	56	38	proteinase	proteinase	NOUN
ajlm-748	56	39	k	k	PROPN
ajlm-748	56	40	was	be	AUX
ajlm-748	56	41	deactivated	deactivate	VERB
ajlm-748	56	42	by	by	ADP
ajlm-748	56	43	increasing	increase	VERB
ajlm-748	56	44	the	the	DET
ajlm-748	56	45	temperature	temperature	NOUN
ajlm-748	56	46	to	to	ADP
ajlm-748	56	47	94	94	NUM
ajlm-748	57	1	°	°	ADP
ajlm-748	57	2	c	c	NOUN
ajlm-748	57	3	for	for	ADP
ajlm-748	57	4	10	10	NUM
ajlm-748	57	5	min.25	min.25	NOUN
ajlm-748	57	6	the	the	DET
ajlm-748	57	7	xpert	xpert	PROPN
ajlm-748	57	8	®	®	PROPN
ajlm-748	57	9	mtb	mtb	PROPN
ajlm-748	57	10	/	/	SYM
ajlm-748	57	11	rif	rif	PROPN
ajlm-748	57	12	assay	assay	PROPN
ajlm-748	57	13	was	be	AUX
ajlm-748	57	14	then	then	ADV
ajlm-748	57	15	performed	perform	VERB
ajlm-748	57	16	following	follow	VERB
ajlm-748	57	17	the	the	DET
ajlm-748	57	18	manufacturer	manufacturer	NOUN
ajlm-748	57	19	’s	’s	PART
ajlm-748	57	20	instructions	instruction	NOUN
ajlm-748	57	21	using	use	VERB
ajlm-748	57	22	the	the	DET
ajlm-748	57	23	lysate	lysate	NOUN
ajlm-748	57	24	and	and	CCONJ
ajlm-748	57	25	without	without	ADP
ajlm-748	57	26	any	any	DET
ajlm-748	57	27	further	further	ADJ
ajlm-748	57	28	attempt	attempt	NOUN
ajlm-748	57	29	to	to	PART
ajlm-748	57	30	extract	extract	VERB
ajlm-748	57	31	dna	dna	NOUN
ajlm-748	57	32	from	from	ADP
ajlm-748	57	33	the	the	DET
ajlm-748	57	34	lysate	lysate	NOUN
ajlm-748	57	35	.	.	PUNCT
ajlm-748	58	1	as	as	ADP
ajlm-748	58	2	a	a	DET
ajlm-748	58	3	quality	quality	NOUN
ajlm-748	58	4	control	control	NOUN
ajlm-748	58	5	measure	measure	NOUN
ajlm-748	58	6	,	,	PUNCT
ajlm-748	58	7	the	the	DET
ajlm-748	58	8	microtome	microtome	NOUN
ajlm-748	58	9	blade	blade	NOUN
ajlm-748	58	10	was	be	AUX
ajlm-748	58	11	changed	change	VERB
ajlm-748	58	12	and	and	CCONJ
ajlm-748	58	13	the	the	DET
ajlm-748	58	14	microtome	microtome	NOUN
ajlm-748	58	15	overlay	overlay	NOUN
ajlm-748	58	16	cleaned	clean	VERB
ajlm-748	58	17	with	with	ADP
ajlm-748	58	18	absolute	absolute	ADJ
ajlm-748	58	19	alcohol	alcohol	NOUN
ajlm-748	58	20	after	after	SCONJ
ajlm-748	58	21	each	each	DET
ajlm-748	58	22	case	case	NOUN
ajlm-748	58	23	to	to	PART
ajlm-748	58	24	prevent	prevent	VERB
ajlm-748	58	25	carryover	carryover	NOUN
ajlm-748	58	26	contamination.6,20,21	contamination.6,20,21	NOUN
ajlm-748	58	27	xpert	xpert	PROPN
ajlm-748	58	28	mtb	mtb	PROPN
ajlm-748	58	29	/	/	SYM
ajlm-748	58	30	rif	rif	PROPN
ajlm-748	58	31	results	result	NOUN
ajlm-748	58	32	were	be	AUX
ajlm-748	58	33	recorded	record	VERB
ajlm-748	58	34	as	as	ADP
ajlm-748	58	35	either	either	CCONJ
ajlm-748	58	36	detected	detect	VERB
ajlm-748	58	37	,	,	PUNCT
ajlm-748	58	38	not	not	PART
ajlm-748	58	39	detected	detect	VERB
ajlm-748	58	40	or	or	CCONJ
ajlm-748	58	41	error	error	NOUN
ajlm-748	58	42	.	.	PUNCT
ajlm-748	59	1	one	one	NUM
ajlm-748	59	2	case	case	NOUN
ajlm-748	59	3	resulted	result	VERB
ajlm-748	59	4	in	in	ADP
ajlm-748	59	5	an	an	DET
ajlm-748	59	6	xpert	xpert	PROPN
ajlm-748	59	7	®	®	NOUN
ajlm-748	59	8	mtb	mtb	PROPN
ajlm-748	59	9	/	/	SYM
ajlm-748	59	10	rif	rif	PROPN
ajlm-748	59	11	assay	assay	NOUN
ajlm-748	59	12	error	error	NOUN
ajlm-748	59	13	.	.	PUNCT
ajlm-748	60	1	the	the	DET
ajlm-748	60	2	bacilli	bacilli	NOUN
ajlm-748	60	3	load	load	NOUN
ajlm-748	60	4	in	in	ADP
ajlm-748	60	5	each	each	DET
ajlm-748	60	6	specimen	speciman	NOUN
ajlm-748	60	7	was	be	AUX
ajlm-748	60	8	also	also	ADV
ajlm-748	60	9	recorded	record	VERB
ajlm-748	60	10	following	follow	VERB
ajlm-748	60	11	the	the	DET
ajlm-748	60	12	assay	assay	PROPN
ajlm-748	60	13	’s	’s	PART
ajlm-748	60	14	semi	semi	ADJ
ajlm-748	60	15	-	-	ADJ
ajlm-748	60	16	quantitative	quantitative	ADJ
ajlm-748	60	17	estimate	estimate	NOUN
ajlm-748	60	18	of	of	ADP
ajlm-748	60	19	the	the	DET
ajlm-748	60	20	bacilli	bacilli	NOUN
ajlm-748	60	21	load	load	NOUN
ajlm-748	60	22	as	as	ADP
ajlm-748	60	23	either	either	CCONJ
ajlm-748	60	24	high	high	ADJ
ajlm-748	60	25	,	,	PUNCT
ajlm-748	60	26	medium	medium	ADJ
ajlm-748	60	27	,	,	PUNCT
ajlm-748	60	28	low	low	ADJ
ajlm-748	60	29	or	or	CCONJ
ajlm-748	60	30	very	very	ADV
ajlm-748	60	31	low	low	ADJ
ajlm-748	60	32	.	.	PUNCT
ajlm-748	61	1	rifampicin	rifampicin	VERB
ajlm-748	61	2	resistance	resistance	NOUN
ajlm-748	61	3	was	be	AUX
ajlm-748	61	4	recorded	record	VERB
ajlm-748	61	5	as	as	ADP
ajlm-748	61	6	either	either	CCONJ
ajlm-748	61	7	detected	detect	VERB
ajlm-748	61	8	,	,	PUNCT
ajlm-748	61	9	not	not	PART
ajlm-748	61	10	detected	detect	VERB
ajlm-748	61	11	or	or	CCONJ
ajlm-748	61	12	indeterminate.15	indeterminate.15	PROPN
ajlm-748	61	13	data	datum	NOUN
ajlm-748	61	14	analysis	analysis	NOUN
ajlm-748	61	15	the	the	DET
ajlm-748	61	16	data	datum	NOUN
ajlm-748	61	17	were	be	AUX
ajlm-748	61	18	analysed	analyse	VERB
ajlm-748	61	19	using	use	VERB
ajlm-748	61	20	the	the	DET
ajlm-748	61	21	statistical	statistical	ADJ
ajlm-748	61	22	package	package	NOUN
ajlm-748	61	23	for	for	ADP
ajlm-748	61	24	social	social	ADJ
ajlm-748	61	25	sciences	science	NOUN
ajlm-748	61	26	version	version	NOUN
ajlm-748	61	27	19	19	NUM
ajlm-748	61	28	,	,	PUNCT
ajlm-748	61	29	(	(	PUNCT
ajlm-748	61	30	ibm	ibm	PROPN
ajlm-748	61	31	corp	corp	PROPN
ajlm-748	61	32	,	,	PUNCT
ajlm-748	61	33	armonk	armonk	PROPN
ajlm-748	61	34	,	,	PUNCT
ajlm-748	61	35	new	new	PROPN
ajlm-748	61	36	york	york	PROPN
ajlm-748	61	37	,	,	PUNCT
ajlm-748	61	38	united	united	PROPN
ajlm-748	61	39	states	states	PROPN
ajlm-748	61	40	)	)	PUNCT
ajlm-748	61	41	.	.	PUNCT
ajlm-748	62	1	sensitivities	sensitivity	NOUN
ajlm-748	62	2	were	be	AUX
ajlm-748	62	3	calculated	calculate	VERB
ajlm-748	62	4	from	from	ADP
ajlm-748	62	5	proportions	proportion	NOUN
ajlm-748	62	6	of	of	ADP
ajlm-748	62	7	cases	case	NOUN
ajlm-748	62	8	positive	positive	ADJ
ajlm-748	62	9	on	on	ADP
ajlm-748	62	10	xpert	xpert	PROPN
ajlm-748	62	11	mtb	mtb	PROPN
ajlm-748	62	12	/	/	SYM
ajlm-748	62	13	rif	rif	PROPN
ajlm-748	62	14	and	and	CCONJ
ajlm-748	62	15	those	those	PRON
ajlm-748	62	16	positively	positively	ADV
ajlm-748	62	17	detected	detect	VERB
ajlm-748	62	18	by	by	ADP
ajlm-748	62	19	zn	zn	PROPN
ajlm-748	62	20	against	against	ADP
ajlm-748	62	21	histology	histology	NOUN
ajlm-748	62	22	as	as	ADP
ajlm-748	62	23	the	the	DET
ajlm-748	62	24	gold	gold	NOUN
ajlm-748	62	25	standard	standard	NOUN
ajlm-748	62	26	.	.	PUNCT
ajlm-748	63	1	a	a	DET
ajlm-748	63	2	chi	chi	ADJ
ajlm-748	63	3	-	-	PUNCT
ajlm-748	63	4	square	square	ADJ
ajlm-748	63	5	test	test	NOUN
ajlm-748	63	6	was	be	AUX
ajlm-748	63	7	applied	apply	VERB
ajlm-748	63	8	to	to	PART
ajlm-748	63	9	test	test	VERB
ajlm-748	63	10	for	for	ADP
ajlm-748	63	11	statistical	statistical	ADJ
ajlm-748	63	12	differences	difference	NOUN
ajlm-748	63	13	and	and	CCONJ
ajlm-748	63	14	p	p	NOUN
ajlm-748	63	15	values	value	NOUN
ajlm-748	63	16	less	less	ADJ
ajlm-748	63	17	than	than	ADP
ajlm-748	63	18	0.05	0.05	NUM
ajlm-748	63	19	were	be	AUX
ajlm-748	63	20	considered	consider	VERB
ajlm-748	63	21	statistically	statistically	ADV
ajlm-748	63	22	significant	significant	ADJ
ajlm-748	63	23	.	.	PUNCT
ajlm-748	64	1	results	result	VERB
ajlm-748	64	2	only	only	ADV
ajlm-748	64	3	79	79	NUM
ajlm-748	64	4	cases	case	NOUN
ajlm-748	64	5	were	be	AUX
ajlm-748	64	6	analysed	analyse	VERB
ajlm-748	64	7	after	after	SCONJ
ajlm-748	64	8	the	the	DET
ajlm-748	64	9	single	single	ADJ
ajlm-748	64	10	case	case	NOUN
ajlm-748	64	11	without	without	ADP
ajlm-748	64	12	xpert	xpert	PROPN
ajlm-748	64	13	mtb	mtb	PROPN
ajlm-748	64	14	/	/	SYM
ajlm-748	64	15	rif	rif	PROPN
ajlm-748	64	16	results	result	NOUN
ajlm-748	64	17	was	be	AUX
ajlm-748	64	18	excluded	exclude	VERB
ajlm-748	64	19	from	from	ADP
ajlm-748	64	20	further	further	ADJ
ajlm-748	64	21	analysis	analysis	NOUN
ajlm-748	64	22	.	.	PUNCT
ajlm-748	65	1	the	the	DET
ajlm-748	65	2	mean	mean	ADJ
ajlm-748	65	3	age	age	NOUN
ajlm-748	65	4	of	of	ADP
ajlm-748	65	5	patients	patient	NOUN
ajlm-748	65	6	was	be	AUX
ajlm-748	65	7	27	27	NUM
ajlm-748	65	8	years	year	NOUN
ajlm-748	65	9	with	with	ADP
ajlm-748	65	10	an	an	DET
ajlm-748	65	11	age	age	NOUN
ajlm-748	65	12	range	range	NOUN
ajlm-748	65	13	of	of	ADP
ajlm-748	65	14	6	6	NUM
ajlm-748	65	15	to	to	PART
ajlm-748	65	16	85	85	NUM
ajlm-748	65	17	years	year	NOUN
ajlm-748	65	18	.	.	PUNCT
ajlm-748	66	1	forty	forty	NUM
ajlm-748	66	2	-	-	PUNCT
ajlm-748	66	3	four	four	NUM
ajlm-748	66	4	(	(	PUNCT
ajlm-748	66	5	55.7	55.7	NUM
ajlm-748	66	6	%	%	NOUN
ajlm-748	66	7	)	)	PUNCT
ajlm-748	66	8	specimens	specimen	NOUN
ajlm-748	66	9	were	be	AUX
ajlm-748	66	10	from	from	ADP
ajlm-748	66	11	female	female	ADJ
ajlm-748	66	12	patients	patient	NOUN
ajlm-748	66	13	,	,	PUNCT
ajlm-748	66	14	and	and	CCONJ
ajlm-748	66	15	35	35	NUM
ajlm-748	66	16	(	(	PUNCT
ajlm-748	66	17	44.3	44.3	NUM
ajlm-748	66	18	%	%	NOUN
ajlm-748	66	19	)	)	PUNCT
ajlm-748	66	20	were	be	AUX
ajlm-748	66	21	from	from	ADP
ajlm-748	66	22	male	male	ADJ
ajlm-748	66	23	patients	patient	NOUN
ajlm-748	66	24	.	.	PUNCT
ajlm-748	67	1	twenty	twenty	NUM
ajlm-748	67	2	-	-	PUNCT
ajlm-748	67	3	six	six	NUM
ajlm-748	67	4	different	different	ADJ
ajlm-748	67	5	types	type	NOUN
ajlm-748	67	6	of	of	ADP
ajlm-748	67	7	tissues	tissue	NOUN
ajlm-748	67	8	were	be	AUX
ajlm-748	67	9	analysed	analyse	VERB
ajlm-748	67	10	and	and	CCONJ
ajlm-748	67	11	classified	classify	VERB
ajlm-748	67	12	into	into	ADP
ajlm-748	67	13	nine	nine	NUM
ajlm-748	67	14	groups	group	NOUN
ajlm-748	67	15	according	accord	VERB
ajlm-748	67	16	to	to	ADP
ajlm-748	67	17	the	the	DET
ajlm-748	67	18	topographic	topographic	ADJ
ajlm-748	67	19	site	site	NOUN
ajlm-748	67	20	of	of	ADP
ajlm-748	67	21	the	the	DET
ajlm-748	67	22	biopsy	biopsy	NOUN
ajlm-748	67	23	(	(	PUNCT
ajlm-748	67	24	table	table	NOUN
ajlm-748	67	25	1	1	NUM
ajlm-748	67	26	)	)	PUNCT
ajlm-748	67	27	.	.	PUNCT
ajlm-748	68	1	lymph	lymph	NOUN
ajlm-748	68	2	nodes	node	NOUN
ajlm-748	68	3	were	be	AUX
ajlm-748	68	4	the	the	DET
ajlm-748	68	5	most	most	ADV
ajlm-748	68	6	common	common	ADJ
ajlm-748	68	7	site	site	NOUN
ajlm-748	68	8	,	,	PUNCT
ajlm-748	68	9	30	30	NUM
ajlm-748	68	10	specimens	specimen	NOUN
ajlm-748	68	11	(	(	PUNCT
ajlm-748	68	12	38	38	NUM
ajlm-748	68	13	%	%	NOUN
ajlm-748	68	14	)	)	PUNCT
ajlm-748	68	15	,	,	PUNCT
ajlm-748	68	16	followed	follow	VERB
ajlm-748	68	17	by	by	ADP
ajlm-748	68	18	the	the	DET
ajlm-748	68	19	female	female	ADJ
ajlm-748	68	20	genital	genital	ADJ
ajlm-748	68	21	tract	tract	NOUN
ajlm-748	68	22	,	,	PUNCT
ajlm-748	68	23	15	15	NUM
ajlm-748	68	24	specimens	specimen	NOUN
ajlm-748	68	25	(	(	PUNCT
ajlm-748	68	26	19	19	NUM
ajlm-748	68	27	%	%	NOUN
ajlm-748	68	28	)	)	PUNCT
ajlm-748	68	29	,	,	PUNCT
ajlm-748	68	30	and	and	CCONJ
ajlm-748	68	31	the	the	DET
ajlm-748	68	32	abdominal	abdominal	ADJ
ajlm-748	68	33	cavity	cavity	NOUN
ajlm-748	68	34	,	,	PUNCT
ajlm-748	68	35	11	11	NUM
ajlm-748	68	36	specimens	specimen	NOUN
ajlm-748	68	37	(	(	PUNCT
ajlm-748	68	38	13.9	13.9	NUM
ajlm-748	68	39	%	%	NOUN
ajlm-748	68	40	)	)	PUNCT
ajlm-748	68	41	.	.	PUNCT
ajlm-748	69	1	the	the	DET
ajlm-748	69	2	least	least	ADJ
ajlm-748	69	3	prevalent	prevalent	ADJ
ajlm-748	69	4	sites	site	NOUN
ajlm-748	69	5	were	be	AUX
ajlm-748	69	6	the	the	DET
ajlm-748	69	7	male	male	ADJ
ajlm-748	69	8	genital	genital	ADJ
ajlm-748	69	9	tract	tract	NOUN
ajlm-748	69	10	and	and	CCONJ
ajlm-748	69	11	the	the	DET
ajlm-748	69	12	central	central	ADJ
ajlm-748	69	13	nervous	nervous	ADJ
ajlm-748	69	14	system	system	NOUN
ajlm-748	69	15	with	with	ADP
ajlm-748	69	16	only	only	ADV
ajlm-748	69	17	one	one	NUM
ajlm-748	69	18	specimen	speciman	NOUN
ajlm-748	69	19	each	each	PRON
ajlm-748	69	20	.	.	PUNCT
ajlm-748	70	1	clinical	clinical	ADJ
ajlm-748	70	2	information	information	NOUN
ajlm-748	70	3	was	be	AUX
ajlm-748	70	4	available	available	ADJ
ajlm-748	70	5	for	for	ADP
ajlm-748	70	6	48.1	48.1	NUM
ajlm-748	70	7	%	%	NOUN
ajlm-748	70	8	(	(	PUNCT
ajlm-748	70	9	38/79	38/79	NUM
ajlm-748	70	10	)	)	PUNCT
ajlm-748	70	11	of	of	ADP
ajlm-748	70	12	the	the	DET
ajlm-748	70	13	specimens	specimen	NOUN
ajlm-748	70	14	,	,	PUNCT
ajlm-748	70	15	of	of	ADP
ajlm-748	70	16	which	which	PRON
ajlm-748	70	17	13.2	13.2	NUM
ajlm-748	70	18	%	%	NOUN
ajlm-748	70	19	(	(	PUNCT
ajlm-748	70	20	5/38	5/38	NOUN
ajlm-748	70	21	)	)	PUNCT
ajlm-748	70	22	were	be	AUX
ajlm-748	70	23	reported	report	VERB
ajlm-748	70	24	to	to	PART
ajlm-748	70	25	have	have	AUX
ajlm-748	70	26	confirmed	confirm	VERB
ajlm-748	70	27	tuberculosis	tuberculosis	NOUN
ajlm-748	70	28	in	in	ADP
ajlm-748	70	29	a	a	DET
ajlm-748	70	30	site	site	NOUN
ajlm-748	70	31	other	other	ADJ
ajlm-748	70	32	than	than	ADP
ajlm-748	70	33	the	the	DET
ajlm-748	70	34	tissue	tissue	NOUN
ajlm-748	70	35	submitted	submit	VERB
ajlm-748	70	36	.	.	PUNCT
ajlm-748	71	1	xpert	xpert	PROPN
ajlm-748	71	2	mtb	mtb	PROPN
ajlm-748	71	3	/	/	SYM
ajlm-748	71	4	rif	rif	PROPN
ajlm-748	71	5	was	be	AUX
ajlm-748	71	6	positive	positive	ADJ
ajlm-748	71	7	for	for	ADP
ajlm-748	71	8	all	all	DET
ajlm-748	71	9	five	five	NUM
ajlm-748	71	10	specimens	specimen	NOUN
ajlm-748	71	11	,	,	PUNCT
ajlm-748	71	12	and	and	CCONJ
ajlm-748	71	13	zn	zn	PROPN
ajlm-748	71	14	was	be	AUX
ajlm-748	71	15	positive	positive	ADJ
ajlm-748	71	16	for	for	ADP
ajlm-748	71	17	three	three	NUM
ajlm-748	71	18	of	of	ADP
ajlm-748	71	19	the	the	DET
ajlm-748	71	20	five	five	NUM
ajlm-748	71	21	specimens	specimen	NOUN
ajlm-748	71	22	.	.	PUNCT
ajlm-748	72	1	in	in	ADP
ajlm-748	72	2	36.8	36.8	NUM
ajlm-748	72	3	%	%	NOUN
ajlm-748	72	4	(	(	PUNCT
ajlm-748	72	5	14/38	14/38	NUM
ajlm-748	72	6	)	)	PUNCT
ajlm-748	72	7	of	of	ADP
ajlm-748	72	8	the	the	DET
ajlm-748	72	9	specimens	specimen	NOUN
ajlm-748	72	10	with	with	ADP
ajlm-748	72	11	clinical	clinical	ADJ
ajlm-748	72	12	information	information	NOUN
ajlm-748	72	13	,	,	PUNCT
ajlm-748	72	14	tuberculosis	tuberculosis	NOUN
ajlm-748	72	15	was	be	AUX
ajlm-748	72	16	clinically	clinically	ADV
ajlm-748	72	17	suspected	suspect	VERB
ajlm-748	72	18	;	;	PUNCT
ajlm-748	72	19	5	5	NUM
ajlm-748	72	20	out	out	ADP
ajlm-748	72	21	of	of	ADP
ajlm-748	72	22	the	the	DET
ajlm-748	72	23	14	14	NUM
ajlm-748	72	24	were	be	AUX
ajlm-748	72	25	positive	positive	ADJ
ajlm-748	72	26	by	by	ADP
ajlm-748	72	27	xpert	xpert	PROPN
ajlm-748	72	28	mtb	mtb	PROPN
ajlm-748	72	29	/	/	SYM
ajlm-748	72	30	rif	rif	PROPN
ajlm-748	72	31	and	and	CCONJ
ajlm-748	72	32	1	1	NUM
ajlm-748	72	33	by	by	ADP
ajlm-748	72	34	zn	zn	PROPN
ajlm-748	72	35	.	.	PUNCT
ajlm-748	73	1	hiv	hiv	PROPN
ajlm-748	73	2	infection	infection	NOUN
ajlm-748	73	3	was	be	AUX
ajlm-748	73	4	reported	report	VERB
ajlm-748	73	5	in	in	ADP
ajlm-748	73	6	six	six	NUM
ajlm-748	73	7	(	(	PUNCT
ajlm-748	73	8	15.8	15.8	NUM
ajlm-748	73	9	%	%	NOUN
ajlm-748	73	10	)	)	PUNCT
ajlm-748	73	11	of	of	ADP
ajlm-748	73	12	the	the	DET
ajlm-748	73	13	specimens	specimen	NOUN
ajlm-748	73	14	,	,	PUNCT
ajlm-748	73	15	of	of	ADP
ajlm-748	73	16	which	which	PRON
ajlm-748	73	17	four	four	NUM
ajlm-748	73	18	were	be	AUX
ajlm-748	73	19	positive	positive	ADJ
ajlm-748	73	20	by	by	ADP
ajlm-748	73	21	xpert	xpert	PROPN
ajlm-748	73	22	mtb	mtb	PROPN
ajlm-748	73	23	/	/	SYM
ajlm-748	73	24	rif	rif	PROPN
ajlm-748	73	25	and	and	CCONJ
ajlm-748	73	26	two	two	NUM
ajlm-748	73	27	by	by	ADP
ajlm-748	73	28	zn	zn	PROPN
ajlm-748	73	29	.	.	PUNCT
ajlm-748	73	30	table	table	NOUN
ajlm-748	73	31	1	1	NUM
ajlm-748	73	32	:	:	PUNCT
ajlm-748	73	33	 	 	SPACE
ajlm-748	73	34	demographic	demographic	ADJ
ajlm-748	73	35	and	and	CCONJ
ajlm-748	73	36	topographic	topographic	NOUN
ajlm-748	73	37	sites	site	NOUN
ajlm-748	73	38	of	of	ADP
ajlm-748	73	39	tissues	tissue	NOUN
ajlm-748	73	40	.	.	PUNCT
ajlm-748	74	1	necrotising	necrotise	VERB
ajlm-748	74	2	granulomatous	granulomatous	ADJ
ajlm-748	74	3	inflammation	inflammation	NOUN
ajlm-748	74	4	was	be	AUX
ajlm-748	74	5	the	the	DET
ajlm-748	74	6	predominant	predominant	ADJ
ajlm-748	74	7	histological	histological	ADJ
ajlm-748	74	8	pattern	pattern	NOUN
ajlm-748	74	9	of	of	ADP
ajlm-748	74	10	inflammation	inflammation	NOUN
ajlm-748	74	11	contributing	contribute	VERB
ajlm-748	74	12	to	to	ADP
ajlm-748	74	13	91.1	91.1	NUM
ajlm-748	74	14	%	%	NOUN
ajlm-748	74	15	(	(	PUNCT
ajlm-748	74	16	72/79	72/79	NUM
ajlm-748	74	17	)	)	PUNCT
ajlm-748	74	18	of	of	ADP
ajlm-748	74	19	the	the	DET
ajlm-748	74	20	specimens	specimen	NOUN
ajlm-748	74	21	(	(	PUNCT
ajlm-748	74	22	table	table	NOUN
ajlm-748	74	23	2	2	NUM
ajlm-748	74	24	)	)	PUNCT
ajlm-748	74	25	.	.	PUNCT
ajlm-748	75	1	in	in	ADP
ajlm-748	75	2	this	this	DET
ajlm-748	75	3	group	group	NOUN
ajlm-748	75	4	,	,	PUNCT
ajlm-748	75	5	53	53	NUM
ajlm-748	75	6	%	%	NOUN
ajlm-748	75	7	(	(	PUNCT
ajlm-748	75	8	38/72	38/72	NUM
ajlm-748	75	9	)	)	PUNCT
ajlm-748	75	10	were	be	AUX
ajlm-748	75	11	positive	positive	ADJ
ajlm-748	75	12	by	by	ADP
ajlm-748	75	13	xpert	xpert	PROPN
ajlm-748	75	14	mtb	mtb	PROPN
ajlm-748	75	15	/	/	SYM
ajlm-748	75	16	rif	rif	PROPN
ajlm-748	75	17	and	and	CCONJ
ajlm-748	75	18	22	22	NUM
ajlm-748	75	19	%	%	NOUN
ajlm-748	75	20	(	(	PUNCT
ajlm-748	75	21	16/72	16/72	NUM
ajlm-748	75	22	)	)	PUNCT
ajlm-748	75	23	by	by	ADP
ajlm-748	75	24	zn	zn	PROPN
ajlm-748	75	25	.	.	PUNCT
ajlm-748	76	1	the	the	DET
ajlm-748	76	2	contribution	contribution	NOUN
ajlm-748	76	3	of	of	ADP
ajlm-748	76	4	granulomatous	granulomatous	ADJ
ajlm-748	76	5	inflammation	inflammation	NOUN
ajlm-748	76	6	,	,	PUNCT
ajlm-748	76	7	chronic	chronic	ADJ
ajlm-748	76	8	inflammation	inflammation	NOUN
ajlm-748	76	9	,	,	PUNCT
ajlm-748	76	10	necrotising	necrotise	VERB
ajlm-748	76	11	inflammation	inflammation	NOUN
ajlm-748	76	12	and	and	CCONJ
ajlm-748	76	13	suppurative	suppurative	ADJ
ajlm-748	76	14	inflammation	inflammation	NOUN
ajlm-748	76	15	was	be	AUX
ajlm-748	76	16	marginal	marginal	ADJ
ajlm-748	76	17	.	.	PUNCT
ajlm-748	77	1	in	in	ADP
ajlm-748	77	2	this	this	DET
ajlm-748	77	3	latter	latter	ADJ
ajlm-748	77	4	group	group	NOUN
ajlm-748	77	5	of	of	ADP
ajlm-748	77	6	inflammation	inflammation	NOUN
ajlm-748	77	7	combined	combine	VERB
ajlm-748	77	8	,	,	PUNCT
ajlm-748	77	9	57	57	NUM
ajlm-748	77	10	%	%	NOUN
ajlm-748	77	11	(	(	PUNCT
ajlm-748	77	12	4/7	4/7	NUM
ajlm-748	77	13	)	)	PUNCT
ajlm-748	77	14	were	be	AUX
ajlm-748	77	15	positive	positive	ADJ
ajlm-748	77	16	by	by	ADP
ajlm-748	77	17	xpert	xpert	PROPN
ajlm-748	77	18	mtb	mtb	PROPN
ajlm-748	77	19	/	/	SYM
ajlm-748	77	20	rif	rif	PROPN
ajlm-748	77	21	and	and	CCONJ
ajlm-748	77	22	none	none	NOUN
ajlm-748	77	23	by	by	ADP
ajlm-748	77	24	zn	zn	PROPN
ajlm-748	77	25	.	.	PUNCT
ajlm-748	77	26	table	table	NOUN
ajlm-748	77	27	2	2	NUM
ajlm-748	77	28	:	:	PUNCT
ajlm-748	77	29	 	 	SPACE
ajlm-748	77	30	yield	yield	NOUN
ajlm-748	77	31	of	of	ADP
ajlm-748	77	32	ziehl	ziehl	PROPN
ajlm-748	77	33	-	-	PUNCT
ajlm-748	77	34	neelsen	neelsen	PROPN
ajlm-748	77	35	and	and	CCONJ
ajlm-748	77	36	xpert	xpert	PROPN
ajlm-748	77	37	mtb	mtb	PROPN
ajlm-748	77	38	/	/	SYM
ajlm-748	77	39	rif	rif	NOUN
ajlm-748	77	40	by	by	ADP
ajlm-748	77	41	patterns	pattern	NOUN
ajlm-748	77	42	of	of	ADP
ajlm-748	77	43	inflammation	inflammation	NOUN
ajlm-748	77	44	.	.	PUNCT
ajlm-748	78	1	in	in	ADP
ajlm-748	78	2	lymph	lymph	NOUN
ajlm-748	78	3	node	node	NOUN
ajlm-748	78	4	tissues	tissue	NOUN
ajlm-748	78	5	,	,	PUNCT
ajlm-748	78	6	16	16	NUM
ajlm-748	78	7	out	out	ADP
ajlm-748	78	8	of	of	ADP
ajlm-748	78	9	30	30	NUM
ajlm-748	78	10	were	be	AUX
ajlm-748	78	11	positive	positive	ADJ
ajlm-748	78	12	by	by	ADP
ajlm-748	78	13	xpert	xpert	PROPN
ajlm-748	78	14	mtb	mtb	PROPN
ajlm-748	78	15	/	/	SYM
ajlm-748	78	16	rif	rif	PROPN
ajlm-748	78	17	compared	compare	VERB
ajlm-748	78	18	to	to	ADP
ajlm-748	78	19	8	8	NUM
ajlm-748	78	20	by	by	ADP
ajlm-748	78	21	zn	zn	PROPN
ajlm-748	78	22	,	,	PUNCT
ajlm-748	78	23	whereas	whereas	SCONJ
ajlm-748	78	24	in	in	ADP
ajlm-748	78	25	non	non	ADJ
ajlm-748	78	26	-	-	ADJ
ajlm-748	78	27	lymph	lymph	ADJ
ajlm-748	78	28	node	node	NOUN
ajlm-748	78	29	tissues	tissue	NOUN
ajlm-748	78	30	,	,	PUNCT
ajlm-748	78	31	26	26	NUM
ajlm-748	78	32	of	of	ADP
ajlm-748	78	33	49	49	NUM
ajlm-748	78	34	were	be	AUX
ajlm-748	78	35	positive	positive	ADJ
ajlm-748	78	36	by	by	ADP
ajlm-748	78	37	xpert	xpert	PROPN
ajlm-748	78	38	mtb	mtb	PROPN
ajlm-748	78	39	/	/	SYM
ajlm-748	78	40	rif	rif	PROPN
ajlm-748	78	41	compared	compare	VERB
ajlm-748	78	42	to	to	ADP
ajlm-748	78	43	8	8	NUM
ajlm-748	78	44	by	by	ADP
ajlm-748	78	45	zn	zn	PROPN
ajlm-748	78	46	(	(	PUNCT
ajlm-748	78	47	table	table	NOUN
ajlm-748	78	48	3	3	NUM
ajlm-748	78	49	)	)	PUNCT
ajlm-748	78	50	.	.	PUNCT
ajlm-748	79	1	xpert	xpert	PROPN
ajlm-748	79	2	mtb	mtb	PROPN
ajlm-748	79	3	/	/	SYM
ajlm-748	79	4	rif	rif	PROPN
ajlm-748	79	5	was	be	AUX
ajlm-748	79	6	positive	positive	ADJ
ajlm-748	79	7	in	in	ADP
ajlm-748	79	8	87.5	87.5	NUM
ajlm-748	79	9	%	%	NOUN
ajlm-748	79	10	(	(	PUNCT
ajlm-748	79	11	14/16	14/16	NUM
ajlm-748	79	12	)	)	PUNCT
ajlm-748	79	13	of	of	ADP
ajlm-748	79	14	the	the	DET
ajlm-748	79	15	specimens	specimen	NOUN
ajlm-748	79	16	that	that	PRON
ajlm-748	79	17	were	be	AUX
ajlm-748	79	18	zn	zn	NUM
ajlm-748	79	19	positive	positive	ADJ
ajlm-748	79	20	.	.	PUNCT
ajlm-748	80	1	two	two	NUM
ajlm-748	80	2	specimens	specimen	NOUN
ajlm-748	80	3	that	that	PRON
ajlm-748	80	4	were	be	AUX
ajlm-748	80	5	zn	zn	NOUN
ajlm-748	80	6	-	-	ADJ
ajlm-748	80	7	positive	positive	ADJ
ajlm-748	80	8	gave	give	VERB
ajlm-748	80	9	a	a	DET
ajlm-748	80	10	negative	negative	ADJ
ajlm-748	80	11	xpert	xpert	PROPN
ajlm-748	80	12	mtb	mtb	PROPN
ajlm-748	80	13	/	/	SYM
ajlm-748	80	14	rif	rif	PROPN
ajlm-748	80	15	result	result	NOUN
ajlm-748	80	16	.	.	PUNCT
ajlm-748	81	1	using	use	VERB
ajlm-748	81	2	h&e	h&e	PROPN
ajlm-748	81	3	histology	histology	NOUN
ajlm-748	81	4	results	result	NOUN
ajlm-748	81	5	as	as	ADP
ajlm-748	81	6	the	the	DET
ajlm-748	81	7	gold	gold	NOUN
ajlm-748	81	8	standard	standard	NOUN
ajlm-748	81	9	,	,	PUNCT
ajlm-748	81	10	the	the	DET
ajlm-748	81	11	overall	overall	ADJ
ajlm-748	81	12	sensitivity	sensitivity	NOUN
ajlm-748	81	13	of	of	ADP
ajlm-748	81	14	zn	zn	PROPN
ajlm-748	81	15	was	be	AUX
ajlm-748	81	16	20.3	20.3	NUM
ajlm-748	81	17	%	%	NOUN
ajlm-748	81	18	(	(	PUNCT
ajlm-748	81	19	95	95	NUM
ajlm-748	81	20	%	%	NOUN
ajlm-748	81	21	confidence	confidence	NOUN
ajlm-748	81	22	interval	interval	NOUN
ajlm-748	81	23	[	[	X
ajlm-748	81	24	ci	ci	X
ajlm-748	81	25	]	]	X
ajlm-748	81	26	:	:	PUNCT
ajlm-748	81	27	12	12	NUM
ajlm-748	81	28	%	%	NOUN
ajlm-748	81	29	–	–	PUNCT
ajlm-748	81	30	30.8	30.8	NUM
ajlm-748	81	31	%	%	NOUN
ajlm-748	81	32	)	)	PUNCT
ajlm-748	81	33	and	and	CCONJ
ajlm-748	81	34	that	that	PRON
ajlm-748	81	35	of	of	ADP
ajlm-748	81	36	xpert	xpert	PROPN
ajlm-748	81	37	mtb	mtb	PROPN
ajlm-748	81	38	/	/	SYM
ajlm-748	81	39	rif	rif	PROPN
ajlm-748	81	40	was	be	AUX
ajlm-748	81	41	53.2	53.2	NUM
ajlm-748	81	42	%	%	NOUN
ajlm-748	81	43	(	(	PUNCT
ajlm-748	81	44	95	95	NUM
ajlm-748	81	45	%	%	NOUN
ajlm-748	81	46	ci	ci	NOUN
ajlm-748	81	47	:	:	PUNCT
ajlm-748	81	48	41.6	41.6	NUM
ajlm-748	81	49	%	%	NOUN
ajlm-748	81	50	–	–	PUNCT
ajlm-748	81	51	64.9	64.9	NUM
ajlm-748	81	52	%	%	NOUN
ajlm-748	81	53	)	)	PUNCT
ajlm-748	81	54	,	,	PUNCT
ajlm-748	81	55	significantly	significantly	ADV
ajlm-748	81	56	better	well	ADJ
ajlm-748	81	57	than	than	ADP
ajlm-748	81	58	zn	zn	PROPN
ajlm-748	81	59	(	(	PUNCT
ajlm-748	81	60	p	p	NOUN
ajlm-748	81	61	=	=	NOUN
ajlm-748	81	62	0.002	0.002	NUM
ajlm-748	81	63	)	)	PUNCT
ajlm-748	81	64	.	.	PUNCT
ajlm-748	82	1	table	table	NOUN
ajlm-748	82	2	3	3	NUM
ajlm-748	82	3	:	:	PUNCT
ajlm-748	82	4	 	 	SPACE
ajlm-748	82	5	yield	yield	NOUN
ajlm-748	82	6	of	of	ADP
ajlm-748	82	7	ziehl	ziehl	PROPN
ajlm-748	82	8	-	-	PUNCT
ajlm-748	82	9	neelsen	neelsen	PROPN
ajlm-748	82	10	and	and	CCONJ
ajlm-748	82	11	xpert	xpert	PROPN
ajlm-748	82	12	mtb	mtb	PROPN
ajlm-748	82	13	/	/	SYM
ajlm-748	82	14	rif	rif	PROPN
ajlm-748	82	15	test	test	NOUN
ajlm-748	82	16	by	by	ADP
ajlm-748	82	17	tissue	tissue	NOUN
ajlm-748	82	18	type	type	NOUN
ajlm-748	82	19	.	.	PUNCT
ajlm-748	83	1	of	of	ADP
ajlm-748	83	2	the	the	DET
ajlm-748	83	3	42	42	NUM
ajlm-748	83	4	xpert	xpert	PROPN
ajlm-748	83	5	mtb	mtb	PROPN
ajlm-748	83	6	/	/	SYM
ajlm-748	83	7	rif	rif	PROPN
ajlm-748	83	8	positive	positive	ADJ
ajlm-748	83	9	specimens	specimen	NOUN
ajlm-748	83	10	,	,	PUNCT
ajlm-748	83	11	the	the	DET
ajlm-748	83	12	bacilli	bacilli	NOUN
ajlm-748	83	13	load	load	NOUN
ajlm-748	83	14	in	in	ADP
ajlm-748	83	15	26	26	NUM
ajlm-748	83	16	(	(	PUNCT
ajlm-748	83	17	61.9	61.9	NUM
ajlm-748	83	18	%	%	NOUN
ajlm-748	83	19	)	)	PUNCT
ajlm-748	83	20	was	be	AUX
ajlm-748	83	21	quantified	quantify	VERB
ajlm-748	83	22	as	as	ADP
ajlm-748	83	23	‘	'	PUNCT
ajlm-748	83	24	very	very	ADV
ajlm-748	83	25	low	low	ADJ
ajlm-748	83	26	’	'	PUNCT
ajlm-748	83	27	,	,	PUNCT
ajlm-748	83	28	11	11	NUM
ajlm-748	83	29	(	(	PUNCT
ajlm-748	83	30	26.2	26.2	NUM
ajlm-748	83	31	%	%	NOUN
ajlm-748	83	32	)	)	PUNCT
ajlm-748	83	33	as	as	ADP
ajlm-748	83	34	‘	'	PUNCT
ajlm-748	83	35	low	low	ADJ
ajlm-748	83	36	’	'	PUNCT
ajlm-748	83	37	and	and	CCONJ
ajlm-748	83	38	only	only	ADV
ajlm-748	83	39	5	5	NUM
ajlm-748	83	40	(	(	PUNCT
ajlm-748	83	41	11.9	11.9	NUM
ajlm-748	83	42	%	%	NOUN
ajlm-748	83	43	)	)	PUNCT
ajlm-748	83	44	as	as	ADP
ajlm-748	83	45	‘	'	PUNCT
ajlm-748	83	46	medium	medium	ADJ
ajlm-748	83	47	’	'	PUNCT
ajlm-748	83	48	.	.	PUNCT
ajlm-748	84	1	none	none	NOUN
ajlm-748	84	2	of	of	ADP
ajlm-748	84	3	the	the	DET
ajlm-748	84	4	cases	case	NOUN
ajlm-748	84	5	showed	show	VERB
ajlm-748	84	6	a	a	DET
ajlm-748	84	7	‘	'	PUNCT
ajlm-748	84	8	high	high	ADJ
ajlm-748	84	9	’	'	PUNCT
ajlm-748	84	10	bacilli	bacilli	NOUN
ajlm-748	84	11	load	load	NOUN
ajlm-748	84	12	and	and	CCONJ
ajlm-748	84	13	neither	neither	PRON
ajlm-748	84	14	was	be	AUX
ajlm-748	84	15	there	there	PRON
ajlm-748	84	16	any	any	DET
ajlm-748	84	17	case	case	NOUN
ajlm-748	84	18	of	of	ADP
ajlm-748	84	19	rifampicin	rifampicin	VERB
ajlm-748	84	20	resistance	resistance	NOUN
ajlm-748	84	21	detected	detect	VERB
ajlm-748	84	22	.	.	PUNCT
ajlm-748	85	1	however	however	ADV
ajlm-748	85	2	,	,	PUNCT
ajlm-748	85	3	7	7	NUM
ajlm-748	85	4	of	of	ADP
ajlm-748	85	5	the	the	DET
ajlm-748	85	6	42	42	NUM
ajlm-748	85	7	xpert	xpert	PROPN
ajlm-748	85	8	mtb	mtb	PROPN
ajlm-748	85	9	/	/	SYM
ajlm-748	85	10	rif	rif	ADJ
ajlm-748	85	11	-	-	ADJ
ajlm-748	85	12	positive	positive	ADJ
ajlm-748	85	13	cases	case	NOUN
ajlm-748	85	14	showed	show	VERB
ajlm-748	85	15	an	an	DET
ajlm-748	85	16	‘	'	PUNCT
ajlm-748	85	17	indeterminate	indeterminate	ADJ
ajlm-748	85	18	’	'	PUNCT
ajlm-748	85	19	rifampicin	rifampicin	VERB
ajlm-748	85	20	resistance	resistance	NOUN
ajlm-748	85	21	,	,	PUNCT
ajlm-748	85	22	all	all	PRON
ajlm-748	85	23	of	of	ADP
ajlm-748	85	24	which	which	PRON
ajlm-748	85	25	had	have	VERB
ajlm-748	85	26	a	a	DET
ajlm-748	85	27	‘	'	PUNCT
ajlm-748	85	28	very	very	ADV
ajlm-748	85	29	low	low	ADJ
ajlm-748	85	30	’	'	PUNCT
ajlm-748	85	31	bacilli	bacilli	NOUN
ajlm-748	85	32	load	load	NOUN
ajlm-748	85	33	.	.	PUNCT
ajlm-748	86	1	discussion	discussion	NOUN
ajlm-748	86	2	in	in	ADP
ajlm-748	86	3	this	this	DET
ajlm-748	86	4	study	study	NOUN
ajlm-748	86	5	,	,	PUNCT
ajlm-748	86	6	we	we	PRON
ajlm-748	86	7	compared	compare	VERB
ajlm-748	86	8	the	the	DET
ajlm-748	86	9	xpert	xpert	PROPN
ajlm-748	86	10	mtb	mtb	PROPN
ajlm-748	86	11	/	/	SYM
ajlm-748	86	12	rif	rif	PROPN
ajlm-748	86	13	assay	assay	PROPN
ajlm-748	86	14	to	to	ADP
ajlm-748	86	15	histology	histology	NOUN
ajlm-748	86	16	for	for	ADP
ajlm-748	86	17	the	the	DET
ajlm-748	86	18	detection	detection	NOUN
ajlm-748	86	19	of	of	ADP
ajlm-748	86	20	m.	m.	NOUN
ajlm-748	86	21	tuberculosis	tuberculosis	NOUN
ajlm-748	86	22	from	from	ADP
ajlm-748	86	23	archived	archive	VERB
ajlm-748	86	24	ffpe	ffpe	NOUN
ajlm-748	86	25	tissues	tissue	NOUN
ajlm-748	86	26	.	.	PUNCT
ajlm-748	87	1	the	the	DET
ajlm-748	87	2	results	result	NOUN
ajlm-748	87	3	obtained	obtain	VERB
ajlm-748	87	4	show	show	NOUN
ajlm-748	87	5	that	that	SCONJ
ajlm-748	87	6	xpert	xpert	PROPN
ajlm-748	87	7	mtb	mtb	PROPN
ajlm-748	87	8	/	/	SYM
ajlm-748	87	9	rif	rif	PROPN
ajlm-748	87	10	had	have	VERB
ajlm-748	87	11	a	a	DET
ajlm-748	87	12	higher	high	ADJ
ajlm-748	87	13	sensitivity	sensitivity	NOUN
ajlm-748	87	14	(	(	PUNCT
ajlm-748	87	15	53.2	53.2	NUM
ajlm-748	87	16	%	%	NOUN
ajlm-748	87	17	)	)	PUNCT
ajlm-748	87	18	than	than	ADP
ajlm-748	87	19	zn	zn	PROPN
ajlm-748	87	20	(	(	PUNCT
ajlm-748	87	21	20.3	20.3	NUM
ajlm-748	87	22	%	%	NOUN
ajlm-748	87	23	)	)	PUNCT
ajlm-748	87	24	.	.	PUNCT
ajlm-748	88	1	similar	similar	ADJ
ajlm-748	88	2	to	to	ADP
ajlm-748	88	3	other	other	ADJ
ajlm-748	88	4	studies	study	NOUN
ajlm-748	88	5	,	,	PUNCT
ajlm-748	88	6	we	we	PRON
ajlm-748	88	7	found	find	VERB
ajlm-748	88	8	that	that	SCONJ
ajlm-748	88	9	zn	zn	PROPN
ajlm-748	88	10	had	have	VERB
ajlm-748	88	11	a	a	DET
ajlm-748	88	12	low	low	ADJ
ajlm-748	88	13	sensitivity	sensitivity	NOUN
ajlm-748	88	14	for	for	ADP
ajlm-748	88	15	tuberculosis	tuberculosis	NOUN
ajlm-748	88	16	in	in	ADP
ajlm-748	88	17	ffpe	ffpe	NOUN
ajlm-748	88	18	tissues.3	tissues.3	VERB
ajlm-748	88	19	the	the	DET
ajlm-748	88	20	sensitivity	sensitivity	NOUN
ajlm-748	88	21	of	of	ADP
ajlm-748	88	22	xpert	xpert	PROPN
ajlm-748	88	23	mtb	mtb	PROPN
ajlm-748	88	24	/	/	SYM
ajlm-748	88	25	rif	rif	PROPN
ajlm-748	88	26	in	in	ADP
ajlm-748	88	27	our	our	PRON
ajlm-748	88	28	study	study	NOUN
ajlm-748	88	29	was	be	AUX
ajlm-748	88	30	comparable	comparable	ADJ
ajlm-748	88	31	to	to	ADP
ajlm-748	88	32	,	,	PUNCT
ajlm-748	88	33	though	though	SCONJ
ajlm-748	88	34	slightly	slightly	ADV
ajlm-748	88	35	higher	high	ADJ
ajlm-748	88	36	(	(	PUNCT
ajlm-748	88	37	53.2	53.2	NUM
ajlm-748	88	38	%	%	NOUN
ajlm-748	88	39	vs	vs	ADP
ajlm-748	88	40	50	50	NUM
ajlm-748	88	41	%	%	NOUN
ajlm-748	88	42	)	)	PUNCT
ajlm-748	88	43	than	than	ADP
ajlm-748	88	44	,	,	PUNCT
ajlm-748	88	45	a	a	DET
ajlm-748	88	46	previous	previous	ADJ
ajlm-748	88	47	study	study	NOUN
ajlm-748	88	48	,	,	PUNCT
ajlm-748	88	49	in	in	ADP
ajlm-748	88	50	which	which	PRON
ajlm-748	88	51	the	the	DET
ajlm-748	88	52	performance	performance	NOUN
ajlm-748	88	53	of	of	ADP
ajlm-748	89	1	the	the	DET
ajlm-748	89	2	qiagen	qiagen	PROPN
ajlm-748	89	3	artus	artus	PROPN
ajlm-748	89	4	m.	m.	PROPN
ajlm-748	89	5	tuberculosis	tuberculosis	ADP
ajlm-748	89	6	rg	rg	PROPN
ajlm-748	89	7	pcr	pcr	PROPN
ajlm-748	89	8	assay	assay	NOUN
ajlm-748	89	9	was	be	AUX
ajlm-748	89	10	compared	compare	VERB
ajlm-748	89	11	to	to	ADP
ajlm-748	89	12	xpert	xpert	PROPN
ajlm-748	89	13	mtb	mtb	PROPN
ajlm-748	89	14	/	/	SYM
ajlm-748	89	15	rif	rif	PROPN
ajlm-748	89	16	among	among	ADP
ajlm-748	89	17	40	40	NUM
ajlm-748	89	18	ffpe	ffpe	ADJ
ajlm-748	89	19	tissues	tissue	NOUN
ajlm-748	89	20	with	with	ADP
ajlm-748	89	21	histopathological	histopathological	ADJ
ajlm-748	89	22	features	feature	NOUN
ajlm-748	89	23	consistent	consistent	ADJ
ajlm-748	89	24	with	with	ADP
ajlm-748	89	25	tuberculosis.26	tuberculosis.26	NOUN
ajlm-748	89	26	similarly	similarly	ADV
ajlm-748	89	27	,	,	PUNCT
ajlm-748	89	28	the	the	DET
ajlm-748	89	29	sensitivity	sensitivity	NOUN
ajlm-748	89	30	of	of	ADP
ajlm-748	89	31	xpert	xpert	PROPN
ajlm-748	89	32	mtb	mtb	PROPN
ajlm-748	89	33	/	/	SYM
ajlm-748	89	34	rif	rif	PROPN
ajlm-748	89	35	in	in	ADP
ajlm-748	89	36	our	our	PRON
ajlm-748	89	37	study	study	NOUN
ajlm-748	89	38	for	for	ADP
ajlm-748	89	39	lymph	lymph	NOUN
ajlm-748	89	40	node	node	NOUN
ajlm-748	89	41	and	and	CCONJ
ajlm-748	89	42	non	non	ADJ
ajlm-748	89	43	-	-	ADJ
ajlm-748	89	44	lymph	lymph	ADJ
ajlm-748	89	45	node	node	ADJ
ajlm-748	89	46	specimens	specimen	NOUN
ajlm-748	89	47	(	(	PUNCT
ajlm-748	89	48	53.1	53.1	NUM
ajlm-748	89	49	%	%	NOUN
ajlm-748	89	50	and	and	CCONJ
ajlm-748	89	51	53.1	53.1	NUM
ajlm-748	89	52	%	%	NOUN
ajlm-748	89	53	)	)	PUNCT
ajlm-748	89	54	was	be	AUX
ajlm-748	89	55	higher	high	ADJ
ajlm-748	89	56	than	than	ADP
ajlm-748	89	57	that	that	PRON
ajlm-748	89	58	found	find	VERB
ajlm-748	89	59	by	by	ADP
ajlm-748	89	60	polepole	polepole	NOUN
ajlm-748	89	61	et	et	PROPN
ajlm-748	89	62	al	al	PROPN
ajlm-748	89	63	.	.	PUNCT
ajlm-748	90	1	(	(	PUNCT
ajlm-748	90	2	30	30	NUM
ajlm-748	90	3	%	%	NOUN
ajlm-748	90	4	and	and	CCONJ
ajlm-748	90	5	35%).20	35%).20	NUM
ajlm-748	90	6	in	in	ADP
ajlm-748	90	7	further	further	ADJ
ajlm-748	90	8	support	support	NOUN
ajlm-748	90	9	of	of	ADP
ajlm-748	90	10	the	the	DET
ajlm-748	90	11	usefulness	usefulness	NOUN
ajlm-748	90	12	of	of	ADP
ajlm-748	90	13	xpert	xpert	PROPN
ajlm-748	90	14	mtb	mtb	PROPN
ajlm-748	90	15	/	/	SYM
ajlm-748	90	16	rif	rif	PROPN
ajlm-748	90	17	,	,	PUNCT
ajlm-748	90	18	its	its	PRON
ajlm-748	90	19	performance	performance	NOUN
ajlm-748	90	20	was	be	AUX
ajlm-748	90	21	found	find	VERB
ajlm-748	90	22	to	to	PART
ajlm-748	90	23	be	be	AUX
ajlm-748	90	24	better	well	ADJ
ajlm-748	90	25	than	than	ADP
ajlm-748	90	26	zn	zn	PROPN
ajlm-748	90	27	in	in	ADP
ajlm-748	90	28	specimens	specimen	NOUN
ajlm-748	90	29	from	from	ADP
ajlm-748	90	30	patients	patient	NOUN
ajlm-748	90	31	reported	report	VERB
ajlm-748	90	32	to	to	PART
ajlm-748	90	33	have	have	VERB
ajlm-748	90	34	tuberculosis	tuberculosis	NOUN
ajlm-748	90	35	in	in	ADP
ajlm-748	90	36	other	other	ADJ
ajlm-748	90	37	sites	site	NOUN
ajlm-748	90	38	and	and	CCONJ
ajlm-748	90	39	hiv	hiv	NOUN
ajlm-748	90	40	infection	infection	NOUN
ajlm-748	90	41	.	.	PUNCT
ajlm-748	91	1	in	in	ADP
ajlm-748	91	2	this	this	DET
ajlm-748	91	3	study	study	NOUN
ajlm-748	91	4	,	,	PUNCT
ajlm-748	91	5	we	we	PRON
ajlm-748	91	6	could	could	AUX
ajlm-748	91	7	not	not	PART
ajlm-748	91	8	determine	determine	VERB
ajlm-748	91	9	the	the	DET
ajlm-748	91	10	specificity	specificity	NOUN
ajlm-748	91	11	of	of	ADP
ajlm-748	91	12	xpert	xpert	PROPN
ajlm-748	91	13	mtb	mtb	PROPN
ajlm-748	91	14	/	/	SYM
ajlm-748	91	15	rif	rif	PROPN
ajlm-748	91	16	,	,	PUNCT
ajlm-748	91	17	because	because	SCONJ
ajlm-748	91	18	we	we	PRON
ajlm-748	91	19	only	only	ADV
ajlm-748	91	20	included	include	VERB
ajlm-748	91	21	tissues	tissue	NOUN
ajlm-748	91	22	with	with	ADP
ajlm-748	91	23	histological	histological	ADJ
ajlm-748	91	24	features	feature	NOUN
ajlm-748	91	25	of	of	ADP
ajlm-748	91	26	tuberculosis	tuberculosis	NOUN
ajlm-748	91	27	.	.	PUNCT
ajlm-748	92	1	the	the	DET
ajlm-748	92	2	two	two	NUM
ajlm-748	92	3	cases	case	NOUN
ajlm-748	92	4	that	that	PRON
ajlm-748	92	5	were	be	AUX
ajlm-748	92	6	zn	zn	NUM
ajlm-748	92	7	positive	positive	ADJ
ajlm-748	92	8	and	and	CCONJ
ajlm-748	92	9	xpert	xpert	PROPN
ajlm-748	92	10	mtb	mtb	PROPN
ajlm-748	92	11	/	/	SYM
ajlm-748	92	12	rif	rif	PROPN
ajlm-748	92	13	negative	negative	NOUN
ajlm-748	92	14	may	may	AUX
ajlm-748	92	15	represent	represent	VERB
ajlm-748	92	16	false	false	ADJ
ajlm-748	92	17	negatives	negative	NOUN
ajlm-748	92	18	or	or	CCONJ
ajlm-748	92	19	may	may	AUX
ajlm-748	92	20	have	have	AUX
ajlm-748	92	21	been	be	AUX
ajlm-748	92	22	cases	case	NOUN
ajlm-748	92	23	of	of	ADP
ajlm-748	92	24	nontuberculous	nontuberculous	ADJ
ajlm-748	92	25	mycobateria	mycobateria	NOUN
ajlm-748	92	26	.	.	PUNCT
ajlm-748	93	1	we	we	PRON
ajlm-748	93	2	could	could	AUX
ajlm-748	93	3	however	however	ADV
ajlm-748	93	4	not	not	PART
ajlm-748	93	5	confirm	confirm	VERB
ajlm-748	93	6	the	the	DET
ajlm-748	93	7	true	true	ADJ
ajlm-748	93	8	status	status	NOUN
ajlm-748	93	9	,	,	PUNCT
ajlm-748	93	10	because	because	SCONJ
ajlm-748	93	11	culture	culture	NOUN
ajlm-748	93	12	was	be	AUX
ajlm-748	93	13	not	not	PART
ajlm-748	93	14	performed	perform	VERB
ajlm-748	93	15	.	.	PUNCT
ajlm-748	94	1	another	another	DET
ajlm-748	94	2	possible	possible	ADJ
ajlm-748	94	3	explanation	explanation	NOUN
ajlm-748	94	4	is	be	AUX
ajlm-748	94	5	that	that	SCONJ
ajlm-748	94	6	cases	case	NOUN
ajlm-748	94	7	of	of	ADP
ajlm-748	94	8	eptb	eptb	NOUN
ajlm-748	94	9	tend	tend	VERB
ajlm-748	94	10	to	to	PART
ajlm-748	94	11	be	be	AUX
ajlm-748	94	12	paucibacillary	paucibacillary	ADJ
ajlm-748	94	13	.	.	PUNCT
ajlm-748	95	1	moreover	moreover	ADV
ajlm-748	95	2	,	,	PUNCT
ajlm-748	95	3	the	the	DET
ajlm-748	95	4	bacilli	bacilli	NOUN
ajlm-748	95	5	may	may	AUX
ajlm-748	95	6	not	not	PART
ajlm-748	95	7	be	be	AUX
ajlm-748	95	8	evenly	evenly	ADV
ajlm-748	95	9	distributed	distribute	VERB
ajlm-748	95	10	within	within	ADP
ajlm-748	95	11	the	the	DET
ajlm-748	95	12	tissue,3	tissue,3	NOUN
ajlm-748	95	13	raising	raise	VERB
ajlm-748	95	14	the	the	DET
ajlm-748	95	15	possibility	possibility	NOUN
ajlm-748	95	16	that	that	SCONJ
ajlm-748	95	17	the	the	DET
ajlm-748	95	18	sample	sample	NOUN
ajlm-748	95	19	came	come	VERB
ajlm-748	95	20	from	from	ADP
ajlm-748	95	21	a	a	DET
ajlm-748	95	22	part	part	NOUN
ajlm-748	95	23	of	of	ADP
ajlm-748	95	24	the	the	DET
ajlm-748	95	25	tissue	tissue	NOUN
ajlm-748	95	26	that	that	PRON
ajlm-748	95	27	may	may	AUX
ajlm-748	95	28	have	have	AUX
ajlm-748	95	29	not	not	PART
ajlm-748	95	30	harboured	harbour	VERB
ajlm-748	95	31	any	any	DET
ajlm-748	95	32	organisms	organism	NOUN
ajlm-748	95	33	.	.	PUNCT
ajlm-748	96	1	multiple	multiple	ADJ
ajlm-748	96	2	(	(	PUNCT
ajlm-748	96	3	up	up	ADP
ajlm-748	96	4	to	to	PART
ajlm-748	96	5	10	10	NUM
ajlm-748	96	6	sections	section	NOUN
ajlm-748	96	7	,	,	PUNCT
ajlm-748	96	8	10	10	NUM
ajlm-748	96	9	µm	µm	ADP
ajlm-748	96	10	thick	thick	ADJ
ajlm-748	96	11	)	)	PUNCT
ajlm-748	96	12	sections	section	NOUN
ajlm-748	96	13	of	of	ADP
ajlm-748	96	14	tissue	tissue	NOUN
ajlm-748	96	15	were	be	AUX
ajlm-748	96	16	processed	process	VERB
ajlm-748	96	17	for	for	ADP
ajlm-748	96	18	xpert	xpert	PROPN
ajlm-748	96	19	mtb	mtb	PROPN
ajlm-748	96	20	/	/	SYM
ajlm-748	96	21	rif	rif	PROPN
ajlm-748	96	22	testing	testing	NOUN
ajlm-748	96	23	with	with	ADP
ajlm-748	96	24	the	the	DET
ajlm-748	96	25	aim	aim	NOUN
ajlm-748	96	26	of	of	ADP
ajlm-748	96	27	increasing	increase	VERB
ajlm-748	96	28	the	the	DET
ajlm-748	96	29	chances	chance	NOUN
ajlm-748	96	30	of	of	ADP
ajlm-748	96	31	obtaining	obtain	VERB
ajlm-748	96	32	sections	section	NOUN
ajlm-748	96	33	with	with	ADP
ajlm-748	96	34	the	the	DET
ajlm-748	96	35	bacilli	bacilli	NOUN
ajlm-748	96	36	;	;	PUNCT
ajlm-748	96	37	however	however	ADV
ajlm-748	96	38	,	,	PUNCT
ajlm-748	96	39	we	we	PRON
ajlm-748	96	40	do	do	AUX
ajlm-748	96	41	not	not	PART
ajlm-748	96	42	know	know	VERB
ajlm-748	96	43	to	to	ADP
ajlm-748	96	44	what	what	DET
ajlm-748	96	45	extent	extent	NOUN
ajlm-748	96	46	this	this	PRON
ajlm-748	96	47	mitigated	mitigate	VERB
ajlm-748	96	48	the	the	DET
ajlm-748	96	49	above	above	ADJ
ajlm-748	96	50	factors	factor	NOUN
ajlm-748	96	51	.	.	PUNCT
ajlm-748	97	1	the	the	DET
ajlm-748	97	2	quality	quality	NOUN
ajlm-748	97	3	of	of	ADP
ajlm-748	97	4	dna	dna	PROPN
ajlm-748	97	5	is	be	AUX
ajlm-748	97	6	also	also	ADV
ajlm-748	97	7	likely	likely	ADJ
ajlm-748	97	8	to	to	PART
ajlm-748	97	9	have	have	AUX
ajlm-748	97	10	been	be	AUX
ajlm-748	97	11	reduced	reduce	VERB
ajlm-748	97	12	due	due	ADP
ajlm-748	97	13	to	to	ADP
ajlm-748	97	14	the	the	DET
ajlm-748	97	15	untoward	untoward	ADJ
ajlm-748	97	16	effects	effect	NOUN
ajlm-748	97	17	of	of	ADP
ajlm-748	97	18	formalin	formalin	NOUN
ajlm-748	97	19	fixation.22	fixation.22	NOUN
ajlm-748	97	20	a	a	DET
ajlm-748	97	21	study	study	NOUN
ajlm-748	97	22	by	by	ADP
ajlm-748	97	23	jonathan	jonathan	PROPN
ajlm-748	97	24	et	et	PROPN
ajlm-748	97	25	al	al	PROPN
ajlm-748	97	26	.	.	PROPN
ajlm-748	97	27	conducted	conduct	VERB
ajlm-748	97	28	to	to	PART
ajlm-748	97	29	investigate	investigate	VERB
ajlm-748	97	30	the	the	DET
ajlm-748	97	31	effects	effect	NOUN
ajlm-748	97	32	of	of	ADP
ajlm-748	97	33	fixatives	fixative	NOUN
ajlm-748	97	34	and	and	CCONJ
ajlm-748	97	35	fixation	fixation	NOUN
ajlm-748	97	36	times	time	NOUN
ajlm-748	97	37	on	on	ADP
ajlm-748	97	38	pcr	pcr	PROPN
ajlm-748	97	39	showed	show	VERB
ajlm-748	97	40	that	that	SCONJ
ajlm-748	97	41	formalin	formalin	NOUN
ajlm-748	97	42	-	-	PUNCT
ajlm-748	97	43	fixed	fix	VERB
ajlm-748	97	44	tissues	tissue	NOUN
ajlm-748	97	45	gave	give	VERB
ajlm-748	97	46	reliable	reliable	ADJ
ajlm-748	97	47	pcr	pcr	ADJ
ajlm-748	97	48	results	result	NOUN
ajlm-748	97	49	,	,	PUNCT
ajlm-748	97	50	if	if	SCONJ
ajlm-748	97	51	the	the	DET
ajlm-748	97	52	tissue	tissue	NOUN
ajlm-748	97	53	was	be	AUX
ajlm-748	97	54	fixed	fix	VERB
ajlm-748	97	55	for	for	ADP
ajlm-748	97	56	less	less	ADJ
ajlm-748	97	57	than	than	ADP
ajlm-748	97	58	48	48	NUM
ajlm-748	97	59	h.23	h.23	NOUN
ajlm-748	97	60	in	in	ADP
ajlm-748	97	61	this	this	DET
ajlm-748	97	62	study	study	NOUN
ajlm-748	97	63	,	,	PUNCT
ajlm-748	97	64	standardisation	standardisation	NOUN
ajlm-748	97	65	of	of	ADP
ajlm-748	97	66	fixation	fixation	NOUN
ajlm-748	97	67	times	time	NOUN
ajlm-748	97	68	and	and	CCONJ
ajlm-748	97	69	dilution	dilution	NOUN
ajlm-748	97	70	of	of	ADP
ajlm-748	97	71	formalin	formalin	NOUN
ajlm-748	97	72	used	use	VERB
ajlm-748	97	73	could	could	AUX
ajlm-748	97	74	not	not	PART
ajlm-748	97	75	be	be	AUX
ajlm-748	97	76	determined	determine	VERB
ajlm-748	97	77	for	for	ADP
ajlm-748	97	78	83	83	NUM
ajlm-748	97	79	%	%	NOUN
ajlm-748	97	80	of	of	ADP
ajlm-748	97	81	the	the	DET
ajlm-748	97	82	specimens	specimen	NOUN
ajlm-748	97	83	that	that	PRON
ajlm-748	97	84	had	have	AUX
ajlm-748	97	85	been	be	AUX
ajlm-748	97	86	referred	refer	VERB
ajlm-748	97	87	from	from	ADP
ajlm-748	97	88	other	other	ADJ
ajlm-748	97	89	hospitals	hospital	NOUN
ajlm-748	97	90	in	in	ADP
ajlm-748	97	91	different	different	ADJ
ajlm-748	97	92	parts	part	NOUN
ajlm-748	97	93	of	of	ADP
ajlm-748	97	94	the	the	DET
ajlm-748	97	95	country	country	NOUN
ajlm-748	97	96	.	.	PUNCT
ajlm-748	98	1	a	a	DET
ajlm-748	98	2	semi	semi	ADJ
ajlm-748	98	3	-	-	ADJ
ajlm-748	98	4	quantitative	quantitative	ADJ
ajlm-748	98	5	estimate	estimate	NOUN
ajlm-748	98	6	of	of	ADP
ajlm-748	98	7	bacilli	bacilli	NOUN
ajlm-748	98	8	load	load	NOUN
ajlm-748	98	9	based	base	VERB
ajlm-748	98	10	on	on	ADP
ajlm-748	98	11	the	the	DET
ajlm-748	98	12	cycle	cycle	NOUN
ajlm-748	98	13	threshold	threshold	NOUN
ajlm-748	98	14	value	value	NOUN
ajlm-748	98	15	is	be	AUX
ajlm-748	98	16	another	another	DET
ajlm-748	98	17	parameter	parameter	NOUN
ajlm-748	98	18	that	that	PRON
ajlm-748	98	19	is	be	AUX
ajlm-748	98	20	obtained	obtain	VERB
ajlm-748	98	21	from	from	ADP
ajlm-748	98	22	the	the	DET
ajlm-748	98	23	xpert	xpert	PROPN
ajlm-748	98	24	®	®	PROPN
ajlm-748	98	25	mtb	mtb	PROPN
ajlm-748	98	26	/	/	SYM
ajlm-748	98	27	rif	rif	PROPN
ajlm-748	98	28	assay	assay	NOUN
ajlm-748	98	29	.	.	PUNCT
ajlm-748	99	1	in	in	ADP
ajlm-748	99	2	this	this	DET
ajlm-748	99	3	study	study	NOUN
ajlm-748	99	4	,	,	PUNCT
ajlm-748	99	5	we	we	PRON
ajlm-748	99	6	found	find	VERB
ajlm-748	99	7	that	that	SCONJ
ajlm-748	99	8	more	more	ADJ
ajlm-748	99	9	than	than	ADP
ajlm-748	99	10	three	three	NUM
ajlm-748	99	11	-	-	PUNCT
ajlm-748	99	12	quarters	quarter	NOUN
ajlm-748	99	13	of	of	ADP
ajlm-748	99	14	the	the	DET
ajlm-748	99	15	cases	case	NOUN
ajlm-748	99	16	(	(	PUNCT
ajlm-748	99	17	61.9	61.9	NUM
ajlm-748	99	18	%	%	NOUN
ajlm-748	99	19	and	and	CCONJ
ajlm-748	99	20	26.2	26.2	NUM
ajlm-748	99	21	%	%	NOUN
ajlm-748	99	22	)	)	PUNCT
ajlm-748	99	23	had	have	VERB
ajlm-748	99	24	a	a	DET
ajlm-748	99	25	quantification	quantification	NOUN
ajlm-748	99	26	of	of	ADP
ajlm-748	99	27	either	either	PRON
ajlm-748	99	28	‘	'	PUNCT
ajlm-748	99	29	very	very	ADV
ajlm-748	99	30	low	low	ADJ
ajlm-748	99	31	’	'	PUNCT
ajlm-748	99	32	or	or	CCONJ
ajlm-748	99	33	‘	'	PUNCT
ajlm-748	99	34	low	low	ADJ
ajlm-748	99	35	’	'	PUNCT
ajlm-748	99	36	.	.	PUNCT
ajlm-748	100	1	this	this	DET
ajlm-748	100	2	finding	finding	NOUN
ajlm-748	100	3	is	be	AUX
ajlm-748	100	4	probably	probably	ADV
ajlm-748	100	5	due	due	ADJ
ajlm-748	100	6	to	to	ADP
ajlm-748	100	7	the	the	DET
ajlm-748	100	8	above	above	ADV
ajlm-748	100	9	-	-	PUNCT
ajlm-748	100	10	mentioned	mention	VERB
ajlm-748	100	11	pre	pre	ADJ
ajlm-748	100	12	-	-	ADJ
ajlm-748	100	13	analytical	analytical	ADJ
ajlm-748	100	14	factors	factor	NOUN
ajlm-748	100	15	:	:	PUNCT
ajlm-748	100	16	the	the	DET
ajlm-748	100	17	paucibacillary	paucibacillary	ADJ
ajlm-748	100	18	nature	nature	NOUN
ajlm-748	100	19	of	of	ADP
ajlm-748	100	20	eptb	eptb	ADJ
ajlm-748	100	21	samples	sample	NOUN
ajlm-748	100	22	and	and	CCONJ
ajlm-748	100	23	formalin	formalin	NOUN
ajlm-748	100	24	fixation	fixation	NOUN
ajlm-748	100	25	.	.	PUNCT
ajlm-748	101	1	the	the	DET
ajlm-748	101	2	secondary	secondary	ADJ
ajlm-748	101	3	objective	objective	NOUN
ajlm-748	101	4	of	of	ADP
ajlm-748	101	5	our	our	PRON
ajlm-748	101	6	study	study	NOUN
ajlm-748	101	7	was	be	AUX
ajlm-748	101	8	to	to	PART
ajlm-748	101	9	determine	determine	VERB
ajlm-748	101	10	the	the	DET
ajlm-748	101	11	prevalence	prevalence	NOUN
ajlm-748	101	12	of	of	ADP
ajlm-748	101	13	rifampicin	rifampicin	VERB
ajlm-748	101	14	resistance	resistance	NOUN
ajlm-748	101	15	.	.	PUNCT
ajlm-748	102	1	in	in	ADP
ajlm-748	102	2	this	this	DET
ajlm-748	102	3	study	study	NOUN
ajlm-748	102	4	,	,	PUNCT
ajlm-748	102	5	no	no	DET
ajlm-748	102	6	case	case	NOUN
ajlm-748	102	7	of	of	ADP
ajlm-748	102	8	rifampicin	rifampicin	VERB
ajlm-748	102	9	resistance	resistance	NOUN
ajlm-748	102	10	was	be	AUX
ajlm-748	102	11	detected	detect	VERB
ajlm-748	102	12	.	.	PUNCT
ajlm-748	103	1	indeterminate	indeterminate	VERB
ajlm-748	103	2	rifampicin	rifampicin	VERB
ajlm-748	103	3	resistance	resistance	NOUN
ajlm-748	103	4	results	result	NOUN
ajlm-748	103	5	were	be	AUX
ajlm-748	103	6	however	however	ADV
ajlm-748	103	7	obtained	obtain	VERB
ajlm-748	103	8	for	for	ADP
ajlm-748	103	9	seven	seven	NUM
ajlm-748	103	10	of	of	ADP
ajlm-748	103	11	the	the	DET
ajlm-748	103	12	42	42	NUM
ajlm-748	103	13	cases	case	NOUN
ajlm-748	103	14	positive	positive	ADJ
ajlm-748	103	15	on	on	ADP
ajlm-748	103	16	xpert	xpert	PROPN
ajlm-748	103	17	mtb	mtb	PROPN
ajlm-748	103	18	/	/	SYM
ajlm-748	103	19	rif	rif	PROPN
ajlm-748	103	20	.	.	PUNCT
ajlm-748	104	1	not	not	PART
ajlm-748	104	2	surprisingly	surprisingly	ADV
ajlm-748	104	3	,	,	PUNCT
ajlm-748	104	4	all	all	PRON
ajlm-748	104	5	had	have	VERB
ajlm-748	104	6	a	a	DET
ajlm-748	104	7	very	very	ADV
ajlm-748	104	8	low	low	ADJ
ajlm-748	104	9	bacilli	bacilli	NOUN
ajlm-748	104	10	load	load	NOUN
ajlm-748	104	11	.	.	PUNCT
ajlm-748	105	1	therefore	therefore	ADV
ajlm-748	105	2	,	,	PUNCT
ajlm-748	105	3	only	only	ADV
ajlm-748	105	4	in	in	ADP
ajlm-748	105	5	the	the	DET
ajlm-748	105	6	35	35	NUM
ajlm-748	105	7	cases	case	NOUN
ajlm-748	105	8	with	with	ADP
ajlm-748	105	9	rifampicin	rifampicin	VERB
ajlm-748	105	10	resistance	resistance	NOUN
ajlm-748	105	11	results	result	NOUN
ajlm-748	105	12	could	could	AUX
ajlm-748	105	13	we	we	PRON
ajlm-748	105	14	truly	truly	ADV
ajlm-748	105	15	say	say	VERB
ajlm-748	105	16	that	that	SCONJ
ajlm-748	105	17	there	there	PRON
ajlm-748	105	18	was	be	VERB
ajlm-748	105	19	no	no	DET
ajlm-748	105	20	case	case	NOUN
ajlm-748	105	21	of	of	ADP
ajlm-748	105	22	rifampicin	rifampicin	VERB
ajlm-748	105	23	resistance	resistance	NOUN
ajlm-748	105	24	detected	detect	VERB
ajlm-748	105	25	.	.	PUNCT
ajlm-748	106	1	in	in	ADP
ajlm-748	106	2	the	the	DET
ajlm-748	106	3	study	study	NOUN
ajlm-748	106	4	by	by	ADP
ajlm-748	106	5	polepole	polepole	NOUN
ajlm-748	106	6	et	et	PROPN
ajlm-748	106	7	al	al	PROPN
ajlm-748	106	8	.	.	PROPN
ajlm-748	106	9	,	,	PUNCT
ajlm-748	106	10	a	a	DET
ajlm-748	106	11	similar	similar	ADJ
ajlm-748	106	12	problem	problem	NOUN
ajlm-748	106	13	of	of	ADP
ajlm-748	106	14	a	a	DET
ajlm-748	106	15	large	large	ADJ
ajlm-748	106	16	number	number	NOUN
ajlm-748	106	17	of	of	ADP
ajlm-748	106	18	‘	'	PUNCT
ajlm-748	106	19	indeterminate	indeterminate	ADJ
ajlm-748	106	20	’	'	PUNCT
ajlm-748	106	21	results	result	NOUN
ajlm-748	106	22	for	for	ADP
ajlm-748	106	23	rifampicin	rifampicin	VERB
ajlm-748	106	24	resistance	resistance	NOUN
ajlm-748	106	25	was	be	AUX
ajlm-748	106	26	also	also	ADV
ajlm-748	106	27	encountered	encounter	VERB
ajlm-748	106	28	.	.	PUNCT
ajlm-748	107	1	therefore	therefore	ADV
ajlm-748	107	2	,	,	PUNCT
ajlm-748	107	3	a	a	DET
ajlm-748	107	4	very	very	ADV
ajlm-748	107	5	low	low	ADJ
ajlm-748	107	6	bacilli	bacilli	NOUN
ajlm-748	107	7	load	load	NOUN
ajlm-748	107	8	as	as	SCONJ
ajlm-748	107	9	quantified	quantify	VERB
ajlm-748	107	10	by	by	ADP
ajlm-748	107	11	xpert	xpert	PROPN
ajlm-748	107	12	mtb	mtb	PROPN
ajlm-748	107	13	/	/	SYM
ajlm-748	107	14	rif	rif	PROPN
ajlm-748	107	15	,	,	PUNCT
ajlm-748	107	16	which	which	PRON
ajlm-748	107	17	subsequently	subsequently	ADV
ajlm-748	107	18	limits	limit	VERB
ajlm-748	107	19	the	the	DET
ajlm-748	107	20	assessment	assessment	NOUN
ajlm-748	107	21	of	of	ADP
ajlm-748	107	22	rifampicin	rifampicin	VERB
ajlm-748	107	23	resistance	resistance	NOUN
ajlm-748	107	24	,	,	PUNCT
ajlm-748	107	25	may	may	AUX
ajlm-748	107	26	have	have	AUX
ajlm-748	107	27	led	lead	VERB
ajlm-748	107	28	to	to	ADP
ajlm-748	107	29	this	this	DET
ajlm-748	107	30	finding	finding	NOUN
ajlm-748	107	31	.	.	PUNCT
ajlm-748	108	1	it	it	PRON
ajlm-748	108	2	is	be	AUX
ajlm-748	108	3	also	also	ADV
ajlm-748	108	4	likely	likely	ADJ
ajlm-748	108	5	that	that	SCONJ
ajlm-748	108	6	this	this	DET
ajlm-748	108	7	finding	finding	NOUN
ajlm-748	108	8	was	be	AUX
ajlm-748	108	9	due	due	ADJ
ajlm-748	108	10	to	to	ADP
ajlm-748	108	11	the	the	DET
ajlm-748	108	12	small	small	ADJ
ajlm-748	108	13	sample	sample	NOUN
ajlm-748	108	14	size	size	NOUN
ajlm-748	108	15	of	of	ADP
ajlm-748	108	16	this	this	DET
ajlm-748	108	17	study	study	NOUN
ajlm-748	108	18	.	.	PUNCT
ajlm-748	109	1	limitations	limitation	NOUN
ajlm-748	109	2	this	this	DET
ajlm-748	109	3	study	study	NOUN
ajlm-748	109	4	was	be	AUX
ajlm-748	109	5	limited	limit	VERB
ajlm-748	109	6	by	by	ADP
ajlm-748	109	7	its	its	PRON
ajlm-748	109	8	small	small	ADJ
ajlm-748	109	9	sample	sample	NOUN
ajlm-748	109	10	size	size	NOUN
ajlm-748	109	11	and	and	CCONJ
ajlm-748	109	12	its	its	PRON
ajlm-748	109	13	retrospective	retrospective	ADJ
ajlm-748	109	14	nature	nature	NOUN
ajlm-748	109	15	.	.	PUNCT
ajlm-748	110	1	the	the	DET
ajlm-748	110	2	duration	duration	NOUN
ajlm-748	110	3	of	of	ADP
ajlm-748	110	4	fixation	fixation	NOUN
ajlm-748	110	5	and	and	CCONJ
ajlm-748	110	6	the	the	DET
ajlm-748	110	7	strength	strength	NOUN
ajlm-748	110	8	of	of	ADP
ajlm-748	110	9	the	the	DET
ajlm-748	110	10	formalin	formalin	NOUN
ajlm-748	110	11	used	use	VERB
ajlm-748	110	12	were	be	AUX
ajlm-748	110	13	not	not	PART
ajlm-748	110	14	known	know	VERB
ajlm-748	110	15	for	for	ADP
ajlm-748	110	16	the	the	DET
ajlm-748	110	17	majority	majority	NOUN
ajlm-748	110	18	of	of	ADP
ajlm-748	110	19	the	the	DET
ajlm-748	110	20	specimens	specimen	NOUN
ajlm-748	110	21	.	.	PUNCT
ajlm-748	111	1	these	these	PRON
ajlm-748	111	2	are	be	AUX
ajlm-748	111	3	important	important	ADJ
ajlm-748	111	4	factors	factor	NOUN
ajlm-748	111	5	,	,	PUNCT
ajlm-748	111	6	because	because	SCONJ
ajlm-748	111	7	they	they	PRON
ajlm-748	111	8	affect	affect	VERB
ajlm-748	111	9	the	the	DET
ajlm-748	111	10	quality	quality	NOUN
ajlm-748	111	11	of	of	ADP
ajlm-748	111	12	the	the	DET
ajlm-748	111	13	dna	dna	PROPN
ajlm-748	111	14	extracted	extract	VERB
ajlm-748	111	15	.	.	PUNCT
ajlm-748	112	1	lack	lack	NOUN
ajlm-748	112	2	of	of	ADP
ajlm-748	112	3	culture	culture	NOUN
ajlm-748	112	4	results	result	NOUN
ajlm-748	112	5	and	and	CCONJ
ajlm-748	112	6	additional	additional	ADJ
ajlm-748	112	7	clinical	clinical	ADJ
ajlm-748	112	8	information	information	NOUN
ajlm-748	112	9	are	be	AUX
ajlm-748	112	10	additional	additional	ADJ
ajlm-748	112	11	limitations	limitation	NOUN
ajlm-748	112	12	,	,	PUNCT
ajlm-748	112	13	because	because	SCONJ
ajlm-748	112	14	they	they	PRON
ajlm-748	112	15	would	would	AUX
ajlm-748	112	16	have	have	AUX
ajlm-748	112	17	aided	aid	VERB
ajlm-748	112	18	in	in	ADP
ajlm-748	112	19	the	the	DET
ajlm-748	112	20	determination	determination	NOUN
ajlm-748	112	21	of	of	ADP
ajlm-748	112	22	the	the	DET
ajlm-748	112	23	clinical	clinical	ADJ
ajlm-748	112	24	utility	utility	NOUN
ajlm-748	112	25	of	of	ADP
ajlm-748	112	26	this	this	DET
ajlm-748	112	27	assay	assay	NOUN
ajlm-748	112	28	in	in	ADP
ajlm-748	112	29	the	the	DET
ajlm-748	112	30	context	context	NOUN
ajlm-748	112	31	of	of	ADP
ajlm-748	112	32	ffpe	ffpe	ADJ
ajlm-748	112	33	tissues	tissue	NOUN
ajlm-748	112	34	.	.	PUNCT
ajlm-748	113	1	conclusion	conclusion	NOUN
ajlm-748	113	2	histological	histological	ADJ
ajlm-748	113	3	assessment	assessment	NOUN
ajlm-748	113	4	of	of	ADP
ajlm-748	113	5	h&e	h&e	PROPN
ajlm-748	113	6	and	and	CCONJ
ajlm-748	113	7	zn	zn	PROPN
ajlm-748	113	8	stained	stain	VERB
ajlm-748	113	9	slides	slide	NOUN
ajlm-748	113	10	forms	form	VERB
ajlm-748	113	11	a	a	DET
ajlm-748	113	12	readily	readily	ADV
ajlm-748	113	13	accessible	accessible	ADJ
ajlm-748	113	14	and	and	CCONJ
ajlm-748	113	15	affordable	affordable	ADJ
ajlm-748	113	16	diagnostic	diagnostic	ADJ
ajlm-748	113	17	tool	tool	NOUN
ajlm-748	113	18	for	for	ADP
ajlm-748	113	19	eptb	eptb	NOUN
ajlm-748	113	20	.	.	PUNCT
ajlm-748	114	1	however	however	ADV
ajlm-748	114	2	,	,	PUNCT
ajlm-748	114	3	the	the	DET
ajlm-748	114	4	inability	inability	NOUN
ajlm-748	114	5	to	to	PART
ajlm-748	114	6	make	make	VERB
ajlm-748	114	7	a	a	DET
ajlm-748	114	8	definitive	definitive	ADJ
ajlm-748	114	9	diagnosis	diagnosis	NOUN
ajlm-748	114	10	of	of	ADP
ajlm-748	114	11	eptb	eptb	NOUN
ajlm-748	114	12	is	be	AUX
ajlm-748	114	13	common	common	ADJ
ajlm-748	114	14	due	due	ADP
ajlm-748	114	15	to	to	ADP
ajlm-748	114	16	its	its	PRON
ajlm-748	114	17	low	low	ADJ
ajlm-748	114	18	sensitivity	sensitivity	NOUN
ajlm-748	114	19	.	.	PUNCT
ajlm-748	115	1	in	in	ADP
ajlm-748	115	2	our	our	PRON
ajlm-748	115	3	study	study	NOUN
ajlm-748	115	4	,	,	PUNCT
ajlm-748	115	5	we	we	PRON
ajlm-748	115	6	found	find	VERB
ajlm-748	115	7	that	that	SCONJ
ajlm-748	115	8	culture	culture	NOUN
ajlm-748	115	9	for	for	ADP
ajlm-748	115	10	eptb	eptb	NOUN
ajlm-748	115	11	was	be	AUX
ajlm-748	115	12	rarely	rarely	ADV
ajlm-748	115	13	done	do	VERB
ajlm-748	115	14	and	and	CCONJ
ajlm-748	115	15	all	all	DET
ajlm-748	115	16	the	the	DET
ajlm-748	115	17	samples	sample	NOUN
ajlm-748	115	18	we	we	PRON
ajlm-748	115	19	analysed	analyse	VERB
ajlm-748	115	20	were	be	AUX
ajlm-748	115	21	received	receive	VERB
ajlm-748	115	22	in	in	ADP
ajlm-748	115	23	the	the	DET
ajlm-748	115	24	laboratory	laboratory	NOUN
ajlm-748	115	25	already	already	ADV
ajlm-748	115	26	fixed	fix	VERB
ajlm-748	115	27	in	in	ADP
ajlm-748	115	28	formalin	formalin	NOUN
ajlm-748	115	29	,	,	PUNCT
ajlm-748	115	30	thereby	thereby	ADV
ajlm-748	115	31	precluding	preclude	VERB
ajlm-748	115	32	culture	culture	NOUN
ajlm-748	115	33	as	as	ADP
ajlm-748	115	34	a	a	DET
ajlm-748	115	35	diagnostic	diagnostic	ADJ
ajlm-748	115	36	test	test	NOUN
ajlm-748	115	37	.	.	PUNCT
ajlm-748	116	1	since	since	SCONJ
ajlm-748	116	2	the	the	DET
ajlm-748	116	3	xpert	xpert	PROPN
ajlm-748	116	4	mtb	mtb	PROPN
ajlm-748	116	5	/	/	SYM
ajlm-748	116	6	rif	rif	PROPN
ajlm-748	116	7	assay	assay	PROPN
ajlm-748	116	8	is	be	AUX
ajlm-748	116	9	widely	widely	ADV
ajlm-748	116	10	available	available	ADJ
ajlm-748	116	11	in	in	ADP
ajlm-748	116	12	many	many	ADJ
ajlm-748	116	13	parts	part	NOUN
ajlm-748	116	14	of	of	ADP
ajlm-748	116	15	kenya	kenya	NOUN
ajlm-748	116	16	,	,	PUNCT
ajlm-748	116	17	it	it	PRON
ajlm-748	116	18	may	may	AUX
ajlm-748	116	19	potentially	potentially	ADV
ajlm-748	116	20	be	be	AUX
ajlm-748	116	21	an	an	DET
ajlm-748	116	22	excellent	excellent	ADJ
ajlm-748	116	23	‘	'	PUNCT
ajlm-748	116	24	add	add	VERB
ajlm-748	116	25	-	-	PUNCT
ajlm-748	116	26	on	on	ADP
ajlm-748	116	27	’	'	PUNCT
ajlm-748	116	28	or	or	CCONJ
ajlm-748	116	29	adjunct	adjunct	ADJ
ajlm-748	116	30	test	test	NOUN
ajlm-748	116	31	for	for	ADP
ajlm-748	116	32	the	the	DET
ajlm-748	116	33	detection	detection	NOUN
ajlm-748	116	34	of	of	ADP
ajlm-748	116	35	m.	m.	NOUN
ajlm-748	116	36	tuberculosis	tuberculosis	NOUN
ajlm-748	116	37	in	in	ADP
ajlm-748	116	38	fixed	fix	VERB
ajlm-748	116	39	tissues	tissue	NOUN
ajlm-748	116	40	.	.	PUNCT
ajlm-748	117	1	this	this	PRON
ajlm-748	117	2	is	be	AUX
ajlm-748	117	3	especially	especially	ADV
ajlm-748	117	4	true	true	ADJ
ajlm-748	117	5	in	in	ADP
ajlm-748	117	6	cases	case	NOUN
ajlm-748	117	7	that	that	PRON
ajlm-748	117	8	are	be	AUX
ajlm-748	117	9	zn	zn	NOUN
ajlm-748	117	10	-	-	ADJ
ajlm-748	117	11	negative	negative	ADJ
ajlm-748	117	12	or	or	CCONJ
ajlm-748	117	13	those	those	PRON
ajlm-748	117	14	that	that	PRON
ajlm-748	117	15	lack	lack	VERB
ajlm-748	117	16	the	the	DET
ajlm-748	117	17	typical	typical	ADJ
ajlm-748	117	18	histologic	histologic	ADJ
ajlm-748	117	19	features	feature	NOUN
ajlm-748	117	20	of	of	ADP
ajlm-748	117	21	tuberculosis	tuberculosis	NOUN
ajlm-748	117	22	.	.	PUNCT
ajlm-748	118	1	we	we	PRON
ajlm-748	118	2	recommend	recommend	VERB
ajlm-748	118	3	a	a	DET
ajlm-748	118	4	validation	validation	NOUN
ajlm-748	118	5	study	study	NOUN
ajlm-748	118	6	to	to	PART
ajlm-748	118	7	determine	determine	VERB
ajlm-748	118	8	the	the	DET
ajlm-748	118	9	clinical	clinical	ADJ
ajlm-748	118	10	utility	utility	NOUN
ajlm-748	118	11	,	,	PUNCT
ajlm-748	118	12	analytical	analytical	ADJ
ajlm-748	118	13	optimisation	optimisation	NOUN
ajlm-748	118	14	and	and	CCONJ
ajlm-748	118	15	cost	cost	NOUN
ajlm-748	118	16	implications	implication	NOUN
ajlm-748	118	17	of	of	ADP
ajlm-748	118	18	this	this	DET
ajlm-748	118	19	assay	assay	NOUN
ajlm-748	118	20	.	.	PUNCT
ajlm-748	119	1	acknowledgements	acknowledgement	NOUN
ajlm-748	119	2	we	we	PRON
ajlm-748	119	3	would	would	AUX
ajlm-748	119	4	like	like	VERB
ajlm-748	119	5	to	to	PART
ajlm-748	119	6	express	express	VERB
ajlm-748	119	7	our	our	PRON
ajlm-748	119	8	gratitude	gratitude	NOUN
ajlm-748	119	9	to	to	ADP
ajlm-748	119	10	geoffrey	geoffrey	PROPN
ajlm-748	119	11	omuse	omuse	PROPN
ajlm-748	119	12	,	,	PUNCT
ajlm-748	119	13	gunturu	gunturu	PROPN
ajlm-748	119	14	revathi	revathi	PROPN
ajlm-748	119	15	and	and	CCONJ
ajlm-748	119	16	nelson	nelson	PROPN
ajlm-748	119	17	kuria	kuria	PROPN
ajlm-748	119	18	for	for	ADP
ajlm-748	119	19	advice	advice	NOUN
ajlm-748	119	20	and	and	CCONJ
ajlm-748	119	21	organisational	organisational	ADJ
ajlm-748	119	22	support	support	NOUN
ajlm-748	119	23	.	.	PUNCT
ajlm-748	120	1	we	we	PRON
ajlm-748	120	2	are	be	AUX
ajlm-748	120	3	also	also	ADV
ajlm-748	120	4	grateful	grateful	ADJ
ajlm-748	120	5	for	for	ADP
ajlm-748	120	6	the	the	DET
ajlm-748	120	7	technical	technical	ADJ
ajlm-748	120	8	support	support	NOUN
ajlm-748	120	9	of	of	ADP
ajlm-748	120	10	christine	christine	PROPN
ajlm-748	120	11	ndaya	ndaya	PROPN
ajlm-748	120	12	and	and	CCONJ
ajlm-748	120	13	sarah	sarah	PROPN
ajlm-748	120	14	mugo	mugo	PROPN
ajlm-748	120	15	.	.	PUNCT
ajlm-748	121	1	we	we	PRON
ajlm-748	121	2	would	would	AUX
ajlm-748	121	3	also	also	ADV
ajlm-748	121	4	like	like	VERB
ajlm-748	121	5	to	to	PART
ajlm-748	121	6	thank	thank	VERB
ajlm-748	121	7	the	the	DET
ajlm-748	121	8	aga	aga	PROPN
ajlm-748	121	9	khan	khan	PROPN
ajlm-748	121	10	university	university	PROPN
ajlm-748	121	11	for	for	ADP
ajlm-748	121	12	funding	fund	VERB
ajlm-748	121	13	this	this	DET
ajlm-748	121	14	study	study	NOUN
ajlm-748	121	15	.	.	PUNCT
ajlm-748	122	1	competing	compete	VERB
ajlm-748	122	2	interests	interest	NOUN
ajlm-748	122	3	the	the	DET
ajlm-748	122	4	authors	author	NOUN
ajlm-748	122	5	declare	declare	VERB
ajlm-748	122	6	that	that	SCONJ
ajlm-748	122	7	they	they	PRON
ajlm-748	122	8	have	have	VERB
ajlm-748	122	9	no	no	DET
ajlm-748	122	10	financial	financial	ADJ
ajlm-748	122	11	or	or	CCONJ
ajlm-748	122	12	personal	personal	ADJ
ajlm-748	122	13	relationships	relationship	NOUN
ajlm-748	122	14	that	that	PRON
ajlm-748	122	15	may	may	AUX
ajlm-748	122	16	have	have	AUX
ajlm-748	122	17	inappropriately	inappropriately	ADV
ajlm-748	122	18	influenced	influence	VERB
ajlm-748	122	19	them	they	PRON
ajlm-748	122	20	in	in	ADP
ajlm-748	122	21	writing	write	VERB
ajlm-748	122	22	this	this	DET
ajlm-748	122	23	article	article	NOUN
ajlm-748	122	24	.	.	PUNCT
ajlm-748	123	1	authors	author	NOUN
ajlm-748	123	2	’	’	PART
ajlm-748	123	3	contributions	contribution	NOUN
ajlm-748	123	4	a.n.n	a.n.n	PROPN
ajlm-748	123	5	.	.	PUNCT
ajlm-748	124	1	and	and	CCONJ
ajlm-748	124	2	s.m.g	s.m.g	PROPN
ajlm-748	124	3	.	.	PUNCT
ajlm-748	125	1	conceived	conceive	VERB
ajlm-748	125	2	the	the	DET
ajlm-748	125	3	idea	idea	NOUN
ajlm-748	125	4	.	.	PUNCT
ajlm-748	126	1	all	all	DET
ajlm-748	126	2	the	the	DET
ajlm-748	126	3	authors	author	NOUN
ajlm-748	126	4	made	make	VERB
ajlm-748	126	5	conceptual	conceptual	ADJ
ajlm-748	126	6	contributions	contribution	NOUN
ajlm-748	126	7	to	to	ADP
ajlm-748	126	8	the	the	DET
ajlm-748	126	9	study	study	NOUN
ajlm-748	126	10	.	.	PUNCT
ajlm-748	127	1	a.n.n	a.n.n	PROPN
ajlm-748	127	2	.	.	PROPN
ajlm-748	127	3	performed	perform	VERB
ajlm-748	127	4	the	the	DET
ajlm-748	127	5	tests	test	NOUN
ajlm-748	127	6	,	,	PUNCT
ajlm-748	127	7	analysed	analyse	VERB
ajlm-748	127	8	the	the	DET
ajlm-748	127	9	data	datum	NOUN
ajlm-748	127	10	and	and	CCONJ
ajlm-748	127	11	prepared	prepare	VERB
ajlm-748	127	12	the	the	DET
ajlm-748	127	13	draft	draft	NOUN
ajlm-748	127	14	.	.	PUNCT
ajlm-748	128	1	s.m.g	s.m.g	VERB
ajlm-748	128	2	.	.	PUNCT
ajlm-748	128	3	reviewed	review	VERB
ajlm-748	128	4	the	the	DET
ajlm-748	128	5	results	result	NOUN
ajlm-748	128	6	.	.	PUNCT
ajlm-748	129	1	s.m.g	s.m.g	VERB
ajlm-748	129	2	.	.	PUNCT
ajlm-748	129	3	,	,	PUNCT
ajlm-748	130	1	s.s	s.s	PROPN
ajlm-748	130	2	.	.	PROPN
ajlm-748	130	3	and	and	CCONJ
ajlm-748	130	4	z.m	z.m	PROPN
ajlm-748	130	5	.	.	PROPN
ajlm-748	130	6	critically	critically	ADV
ajlm-748	130	7	revised	revise	VERB
ajlm-748	130	8	the	the	DET
ajlm-748	130	9	draft	draft	NOUN
ajlm-748	130	10	and	and	CCONJ
ajlm-748	130	11	gave	give	VERB
ajlm-748	130	12	final	final	ADJ
ajlm-748	130	13	approval	approval	NOUN
ajlm-748	130	14	.	.	PUNCT
ajlm-748	131	1	sources	source	NOUN
ajlm-748	131	2	of	of	ADP
ajlm-748	131	3	support	support	NOUN
ajlm-748	131	4	funding	funding	NOUN
ajlm-748	131	5	for	for	ADP
ajlm-748	131	6	the	the	DET
ajlm-748	131	7	study	study	NOUN
ajlm-748	131	8	was	be	AUX
ajlm-748	131	9	provided	provide	VERB
ajlm-748	131	10	by	by	ADP
ajlm-748	131	11	the	the	DET
ajlm-748	131	12	aga	aga	PROPN
ajlm-748	131	13	khan	khan	PROPN
ajlm-748	131	14	university	university	PROPN
ajlm-748	131	15	,	,	PUNCT
ajlm-748	131	16	nairobi	nairobi	PROPN
ajlm-748	131	17	,	,	PUNCT
ajlm-748	131	18	kenya	kenya	PROPN
ajlm-748	131	19	.	.	PUNCT
ajlm-748	132	1	data	datum	NOUN
ajlm-748	132	2	availability	availability	NOUN
ajlm-748	132	3	statement	statement	NOUN
ajlm-748	132	4	data	datum	NOUN
ajlm-748	132	5	sharing	sharing	NOUN
ajlm-748	132	6	is	be	AUX
ajlm-748	132	7	not	not	PART
ajlm-748	132	8	applicable	applicable	ADJ
ajlm-748	132	9	to	to	ADP
ajlm-748	132	10	this	this	DET
ajlm-748	132	11	article	article	NOUN
ajlm-748	132	12	as	as	SCONJ
ajlm-748	132	13	no	no	DET
ajlm-748	132	14	new	new	ADJ
ajlm-748	132	15	data	datum	NOUN
ajlm-748	132	16	were	be	AUX
ajlm-748	132	17	created	create	VERB
ajlm-748	132	18	or	or	CCONJ
ajlm-748	132	19	analysed	analyse	VERB
ajlm-748	132	20	in	in	ADP
ajlm-748	132	21	this	this	DET
ajlm-748	132	22	study	study	NOUN
ajlm-748	132	23	.	.	PUNCT
ajlm-748	133	1	disclaimer	disclaimer	VERB
ajlm-748	133	2	the	the	DET
ajlm-748	133	3	views	view	NOUN
ajlm-748	133	4	and	and	CCONJ
ajlm-748	133	5	opinions	opinion	NOUN
ajlm-748	133	6	expressed	express	VERB
ajlm-748	133	7	in	in	ADP
ajlm-748	133	8	this	this	DET
ajlm-748	133	9	article	article	NOUN
ajlm-748	133	10	are	be	AUX
ajlm-748	133	11	those	those	PRON
ajlm-748	133	12	of	of	ADP
ajlm-748	133	13	the	the	DET
ajlm-748	133	14	author(s	author(s	NOUN
ajlm-748	133	15	)	)	PUNCT
ajlm-748	133	16	and	and	CCONJ
ajlm-748	133	17	do	do	AUX
ajlm-748	133	18	not	not	PART
ajlm-748	133	19	necessarily	necessarily	ADV
ajlm-748	133	20	reflect	reflect	VERB
ajlm-748	133	21	the	the	DET
ajlm-748	133	22	official	official	ADJ
ajlm-748	133	23	policy	policy	NOUN
ajlm-748	133	24	or	or	CCONJ
ajlm-748	133	25	position	position	NOUN
ajlm-748	133	26	of	of	ADP
ajlm-748	133	27	any	any	DET
ajlm-748	133	28	affiliated	affiliated	ADJ
ajlm-748	133	29	agency	agency	NOUN
ajlm-748	133	30	of	of	ADP
ajlm-748	133	31	the	the	DET
ajlm-748	133	32	authors	author	NOUN
ajlm-748	133	33	.	.	PUNCT
ajlm-748	134	1	references	reference	NOUN
ajlm-748	134	2	world	world	PROPN
ajlm-748	134	3	health	health	NOUN
ajlm-748	134	4	organisation	organisation	NOUN
ajlm-748	134	5	(	(	PUNCT
ajlm-748	134	6	who	who	PRON
ajlm-748	134	7	)	)	PUNCT
ajlm-748	134	8	.	.	PUNCT
ajlm-748	135	1	global	global	ADJ
ajlm-748	135	2	tuberculosis	tuberculosis	NOUN
ajlm-748	135	3	report	report	NOUN
ajlm-748	135	4	.	.	PUNCT
ajlm-748	136	1	2017	2017	NUM
ajlm-748	136	2	.	.	PUNCT
ajlm-748	137	1	geneva	geneva	NOUN
ajlm-748	137	2	:	:	PUNCT
ajlm-748	137	3	who	who	PRON
ajlm-748	137	4	;	;	PUNCT
ajlm-748	137	5	2013	2013	NUM
ajlm-748	137	6	.	.	PUNCT
ajlm-748	138	1	world	world	PROPN
ajlm-748	138	2	health	health	PROPN
ajlm-748	138	3	organisation	organisation	NOUN
ajlm-748	138	4	(	(	PUNCT
ajlm-748	138	5	who	who	PRON
ajlm-748	138	6	)	)	PUNCT
ajlm-748	138	7	.	.	PUNCT
ajlm-748	139	1	policy	policy	NOUN
ajlm-748	139	2	statement	statement	NOUN
ajlm-748	139	3	on	on	ADP
ajlm-748	139	4	xpert	xpert	PROPN
ajlm-748	139	5	mtb	mtb	PROPN
ajlm-748	139	6	-	-	PUNCT
ajlm-748	139	7	rif	rif	PROPN
ajlm-748	139	8	2013	2013	NUM
ajlm-748	139	9	.	.	PUNCT
ajlm-748	140	1	geneva	geneva	PROPN
ajlm-748	140	2	:	:	PUNCT
ajlm-748	140	3	who	who	PRON
ajlm-748	140	4	;	;	PUNCT
ajlm-748	140	5	2013	2013	NUM
ajlm-748	140	6	.	.	PUNCT
ajlm-748	141	1	promod	promod	PROPN
ajlm-748	141	2	k	k	PROPN
ajlm-748	141	3	,	,	PUNCT
ajlm-748	141	4	raj	raj	PROPN
ajlm-748	141	5	a	a	PRON
ajlm-748	141	6	,	,	PUNCT
ajlm-748	141	7	singh	singh	PROPN
ajlm-748	141	8	n	n	CCONJ
ajlm-748	141	9	,	,	PUNCT
ajlm-748	141	10	gopal	gopal	PROPN
ajlm-748	141	11	k.	k.	PROPN
ajlm-748	141	12	diagnosis	diagnosis	PROPN
ajlm-748	141	13	of	of	ADP
ajlm-748	141	14	extrapulmonary	extrapulmonary	ADJ
ajlm-748	141	15	tuberculosis	tuberculosis	NOUN
ajlm-748	141	16	by	by	ADP
ajlm-748	141	17	pcr	pcr	PROPN
ajlm-748	141	18	.	.	PUNCT
ajlm-748	142	1	fems	fems	PROPN
ajlm-748	142	2	microbiol	microbiol	PROPN
ajlm-748	142	3	immunol	immunol	NOUN
ajlm-748	142	4	.	.	PUNCT
ajlm-748	143	1	2012;66:20–36	2012;66:20–36	NUM
ajlm-748	143	2	.	.	PUNCT
ajlm-748	144	1	https://doi.org/10.1111/j.1574-695x.2012.00987.x	https://doi.org/10.1111/j.1574-695x.2012.00987.x	PROPN
ajlm-748	144	2	kitinya	kitinya	PROPN
ajlm-748	144	3	jn	jn	PROPN
ajlm-748	144	4	,	,	PUNCT
ajlm-748	144	5	richter	richter	PROPN
ajlm-748	144	6	c	c	PROPN
ajlm-748	144	7	,	,	PUNCT
ajlm-748	144	8	perenboom	perenboom	NOUN
ajlm-748	144	9	r	r	NOUN
ajlm-748	144	10	,	,	PUNCT
ajlm-748	144	11	chande	chande	PROPN
ajlm-748	144	12	h.	h.	PROPN
ajlm-748	144	13	influence	influence	PROPN
ajlm-748	144	14	of	of	ADP
ajlm-748	144	15	hiv	hiv	PROPN
ajlm-748	144	16	status	status	NOUN
ajlm-748	144	17	on	on	ADP
ajlm-748	144	18	pathological	pathological	ADJ
ajlm-748	144	19	changes	change	NOUN
ajlm-748	144	20	in	in	ADP
ajlm-748	144	21	tuberculous	tuberculous	ADJ
ajlm-748	144	22	pleuritis	pleuritis	NOUN
ajlm-748	144	23	.	.	PUNCT
ajlm-748	145	1	tuber	tuber	PROPN
ajlm-748	145	2	lung	lung	PROPN
ajlm-748	145	3	dis	dis	PROPN
ajlm-748	145	4	.	.	PUNCT
ajlm-748	146	1	1994;75(3):195–198	1994;75(3):195–198	X
ajlm-748	146	2	.	.	PUNCT
ajlm-748	147	1	https://doi.org/10.1016/0962-8479(94)90007-8	https://doi.org/10.1016/0962-8479(94)90007-8	PROPN
ajlm-748	147	2	bekker	bekker	PROPN
ajlm-748	147	3	l	l	PROPN
ajlm-748	147	4	,	,	PUNCT
ajlm-748	147	5	lawn	lawn	PROPN
ajlm-748	147	6	s.	s.	PROPN
ajlm-748	147	7	co	co	NOUN
ajlm-748	147	8	-	-	NOUN
ajlm-748	147	9	pathogenesis	pathogenesis	NOUN
ajlm-748	147	10	of	of	ADP
ajlm-748	147	11	tuberculosis	tuberculosis	NOUN
ajlm-748	147	12	and	and	CCONJ
ajlm-748	147	13	hiv	hiv	PROPN
ajlm-748	147	14	.	.	PUNCT
ajlm-748	148	1	in	in	ADP
ajlm-748	148	2	:	:	PUNCT
ajlm-748	148	3	tuberculosis	tuberculosis	NOUN
ajlm-748	148	4	:	:	PUNCT
ajlm-748	148	5	a	a	DET
ajlm-748	148	6	comprehensive	comprehensive	ADJ
ajlm-748	148	7	clinical	clinical	ADJ
ajlm-748	148	8	reference	reference	NOUN
ajlm-748	148	9	,	,	PUNCT
ajlm-748	148	10	hs	hs	PROPN
ajlm-748	148	11	schaaf	schaaf	PROPN
ajlm-748	148	12	,	,	PUNCT
ajlm-748	148	13	a.	a.	NOUN
ajlm-748	148	14	zumla	zumla	NOUN
ajlm-748	148	15	,	,	PUNCT
ajlm-748	148	16	eds	eds	PROPN
ajlm-748	148	17	.	.	PROPN
ajlm-748	148	18	edinburgh	edinburgh	PROPN
ajlm-748	148	19	:	:	PUNCT
ajlm-748	149	1	w.b	w.b	PROPN
ajlm-748	149	2	saunders	saunder	NOUN
ajlm-748	149	3	;	;	PUNCT
ajlm-748	149	4	2009	2009	NUM
ajlm-748	149	5	,	,	PUNCT
ajlm-748	149	6	p.	p.	NOUN
ajlm-748	150	1	96–106	96–106	NUM
ajlm-748	150	2	.	.	PUNCT
ajlm-748	151	1	baba	baba	PROPN
ajlm-748	151	2	k	k	PROPN
ajlm-748	151	3	,	,	PUNCT
ajlm-748	151	4	pathak	pathak	PROPN
ajlm-748	151	5	s	s	PROPN
ajlm-748	151	6	,	,	PUNCT
ajlm-748	151	7	sviland	sviland	ADJ
ajlm-748	151	8	l	l	NOUN
ajlm-748	151	9	,	,	PUNCT
ajlm-748	151	10	et	et	PROPN
ajlm-748	151	11	al	al	PROPN
ajlm-748	151	12	.	.	PUNCT
ajlm-748	152	1	real	real	ADJ
ajlm-748	152	2	-	-	PUNCT
ajlm-748	152	3	time	time	NOUN
ajlm-748	152	4	quantitative	quantitative	ADJ
ajlm-748	152	5	pcr	pcr	NOUN
ajlm-748	152	6	in	in	ADP
ajlm-748	152	7	the	the	DET
ajlm-748	152	8	diagnosis	diagnosis	NOUN
ajlm-748	152	9	of	of	ADP
ajlm-748	152	10	tuberculosis	tuberculosis	NOUN
ajlm-748	152	11	in	in	ADP
ajlm-748	152	12	formalin	formalin	NOUN
ajlm-748	152	13	-	-	PUNCT
ajlm-748	152	14	fixed	fix	VERB
ajlm-748	152	15	paraffin	paraffin	NOUN
ajlm-748	152	16	-	-	PUNCT
ajlm-748	152	17	embedded	embed	VERB
ajlm-748	152	18	pleural	pleural	ADJ
ajlm-748	152	19	tissue	tissue	NOUN
ajlm-748	152	20	in	in	ADP
ajlm-748	152	21	patients	patient	NOUN
ajlm-748	152	22	from	from	ADP
ajlm-748	152	23	a	a	DET
ajlm-748	152	24	high	high	ADJ
ajlm-748	152	25	hiv	hiv	PROPN
ajlm-748	152	26	endemic	endemic	ADJ
ajlm-748	152	27	area	area	NOUN
ajlm-748	152	28	.	.	PUNCT
ajlm-748	153	1	diagn	diagn	NOUN
ajlm-748	153	2	mol	mol	ADP
ajlm-748	153	3	pathol	pathol	NOUN
ajlm-748	153	4	.	.	PUNCT
ajlm-748	154	1	2008;17(2):112–117	2008;17(2):112–117	NUM
ajlm-748	154	2	.	.	PUNCT
ajlm-748	154	3	https://doi.org/10.1097/pdm.0b013e31814ceac3	https://doi.org/10.1097/pdm.0b013e31814ceac3	NOUN
ajlm-748	154	4	zumla	zumla	PROPN
ajlm-748	154	5	a	a	PROPN
ajlm-748	154	6	,	,	PUNCT
ajlm-748	154	7	james	james	PROPN
ajlm-748	154	8	d.	d.	PROPN
ajlm-748	154	9	granulomatous	granulomatous	ADJ
ajlm-748	154	10	infections	infection	NOUN
ajlm-748	154	11	:	:	PUNCT
ajlm-748	154	12	etiology	etiology	NOUN
ajlm-748	154	13	and	and	CCONJ
ajlm-748	154	14	classification	classification	NOUN
ajlm-748	154	15	.	.	PUNCT
ajlm-748	155	1	clin	clin	PROPN
ajlm-748	155	2	infect	infect	PROPN
ajlm-748	155	3	dis	dis	PROPN
ajlm-748	155	4	.	.	PUNCT
ajlm-748	156	1	1996;23(1):146–158	1996;23(1):146–158	NUM
ajlm-748	156	2	.	.	PUNCT
ajlm-748	157	1	https://doi.org/10.1093/clinids/23.1.146	https://doi.org/10.1093/clinids/23.1.146	PRON
ajlm-748	157	2	mukhopadhyay	mukhopadhyay	NOUN
ajlm-748	157	3	s	s	PROPN
ajlm-748	157	4	,	,	PUNCT
ajlm-748	157	5	aubry	aubry	PROPN
ajlm-748	157	6	mc	mc	PROPN
ajlm-748	157	7	.	.	PROPN
ajlm-748	157	8	pulmonary	pulmonary	ADJ
ajlm-748	157	9	granulomas	granuloma	NOUN
ajlm-748	157	10	:	:	PUNCT
ajlm-748	157	11	differential	differential	ADJ
ajlm-748	157	12	diagnosis	diagnosis	NOUN
ajlm-748	157	13	,	,	PUNCT
ajlm-748	157	14	histologic	histologic	ADJ
ajlm-748	157	15	features	feature	NOUN
ajlm-748	157	16	and	and	CCONJ
ajlm-748	157	17	algorithmic	algorithmic	ADJ
ajlm-748	157	18	approach	approach	NOUN
ajlm-748	157	19	.	.	PUNCT
ajlm-748	158	1	diagnostic	diagnostic	ADJ
ajlm-748	158	2	histopathol	histopathol	NOUN
ajlm-748	158	3	.	.	PUNCT
ajlm-748	159	1	2013;19(8):288–297	2013;19(8):288–297	X
ajlm-748	159	2	.	.	PUNCT
ajlm-748	159	3	https://doi.org/10.1016/j.mpdhp.2013.06.008	https://doi.org/10.1016/j.mpdhp.2013.06.008	PROPN
ajlm-748	159	4	zink	zink	PROPN
ajlm-748	159	5	ar	ar	PROPN
ajlm-748	159	6	,	,	PUNCT
ajlm-748	159	7	nerlich	nerlich	PROPN
ajlm-748	159	8	ag	ag	PROPN
ajlm-748	159	9	.	.	PROPN
ajlm-748	159	10	molecular	molecular	ADJ
ajlm-748	159	11	strain	strain	NOUN
ajlm-748	159	12	identification	identification	NOUN
ajlm-748	159	13	of	of	ADP
ajlm-748	159	14	the	the	DET
ajlm-748	159	15	mycobacterium	mycobacterium	NOUN
ajlm-748	159	16	tuberculosis	tuberculosis	NOUN
ajlm-748	159	17	complex	complex	NOUN
ajlm-748	159	18	in	in	ADP
ajlm-748	159	19	archival	archival	NOUN
ajlm-748	159	20	tissue	tissue	NOUN
ajlm-748	159	21	samples	sample	NOUN
ajlm-748	159	22	.	.	PUNCT
ajlm-748	160	1	j	j	PROPN
ajlm-748	160	2	clin	clin	PROPN
ajlm-748	160	3	pathol	pathol	PROPN
ajlm-748	160	4	.	.	PUNCT
ajlm-748	161	1	2004;57(11):1185–1192	2004;57(11):1185–1192	X
ajlm-748	161	2	.	.	PUNCT
ajlm-748	162	1	https://doi.org/10.1136/jcp.2003.015719	https://doi.org/10.1136/jcp.2003.015719	PROPN
ajlm-748	162	2	pai	pai	PROPN
ajlm-748	162	3	m	m	PROPN
ajlm-748	162	4	,	,	PUNCT
ajlm-748	162	5	flores	flores	PROPN
ajlm-748	162	6	l	l	PROPN
ajlm-748	162	7	,	,	PUNCT
ajlm-748	162	8	hubbard	hubbard	PROPN
ajlm-748	162	9	a	a	PRON
ajlm-748	162	10	,	,	PUNCT
ajlm-748	162	11	riley	riley	PROPN
ajlm-748	162	12	l	l	PROPN
ajlm-748	162	13	,	,	PUNCT
ajlm-748	162	14	colford	colford	PROPN
ajlm-748	162	15	j.	j.	PROPN
ajlm-748	162	16	nucleic	nucleic	PROPN
ajlm-748	162	17	acid	acid	NOUN
ajlm-748	162	18	amplification	amplification	NOUN
ajlm-748	162	19	tests	test	NOUN
ajlm-748	162	20	in	in	ADP
ajlm-748	162	21	the	the	DET
ajlm-748	162	22	diagnosis	diagnosis	NOUN
ajlm-748	162	23	of	of	ADP
ajlm-748	162	24	tuberculous	tuberculous	ADJ
ajlm-748	162	25	pleuritis	pleuritis	NOUN
ajlm-748	162	26	:	:	PUNCT
ajlm-748	162	27	a	a	DET
ajlm-748	162	28	systematic	systematic	ADJ
ajlm-748	162	29	review	review	NOUN
ajlm-748	162	30	and	and	CCONJ
ajlm-748	162	31	meta	meta	ADJ
ajlm-748	162	32	-	-	PUNCT
ajlm-748	162	33	analysis	analysis	NOUN
ajlm-748	162	34	.	.	PUNCT
ajlm-748	163	1	bmc	bmc	PROPN
ajlm-748	163	2	infect	infect	PROPN
ajlm-748	163	3	dis	dis	PROPN
ajlm-748	163	4	.	.	PUNCT
ajlm-748	164	1	2004;4(1):6	2004;4(1):6	PROPN
ajlm-748	164	2	.	.	PUNCT
ajlm-748	165	1	https://doi.org/10.1186/1471-2334-4-6	https://doi.org/10.1186/1471-2334-4-6	PROPN
ajlm-748	165	2	kritski	kritski	PROPN
ajlm-748	165	3	al	al	PROPN
ajlm-748	165	4	,	,	PUNCT
ajlm-748	165	5	bonfim	bonfim	NOUN
ajlm-748	165	6	g	g	NOUN
ajlm-748	165	7	,	,	PUNCT
ajlm-748	165	8	tupinanba	tupinanba	PROPN
ajlm-748	165	9	t	t	PROPN
ajlm-748	165	10	,	,	PUNCT
ajlm-748	165	11	et	et	PROPN
ajlm-748	165	12	al	al	PROPN
ajlm-748	165	13	.	.	PUNCT
ajlm-748	165	14	usefulness	usefulness	NOUN
ajlm-748	165	15	of	of	ADP
ajlm-748	165	16	pcr	pcr	NOUN
ajlm-748	165	17	in	in	ADP
ajlm-748	165	18	the	the	DET
ajlm-748	165	19	detection	detection	NOUN
ajlm-748	165	20	of	of	ADP
ajlm-748	165	21	mycobacterium	mycobacterium	NOUN
ajlm-748	165	22	tuberculosis	tuberculosis	NOUN
ajlm-748	165	23	dna	dna	NOUN
ajlm-748	165	24	from	from	ADP
ajlm-748	165	25	formalin	formalin	NOUN
ajlm-748	165	26	fixed	fix	VERB
ajlm-748	165	27	paraffin	paraffin	NOUN
ajlm-748	165	28	embedded	embed	VERB
ajlm-748	165	29	lymph	lymph	NOUN
ajlm-748	165	30	-	-	PUNCT
ajlm-748	165	31	nodes	node	NOUN
ajlm-748	165	32	among	among	ADP
ajlm-748	165	33	patients	patient	NOUN
ajlm-748	165	34	hiv(+	hiv(+	ADJ
ajlm-748	165	35	)	)	PUNCT
ajlm-748	165	36	or	or	CCONJ
ajlm-748	165	37	hiv(-	hiv(-	PROPN
ajlm-748	165	38	)	)	PUNCT
ajlm-748	165	39	.	.	PUNCT
ajlm-748	166	1	tuber	tuber	PROPN
ajlm-748	166	2	lung	lung	PROPN
ajlm-748	166	3	dis	dis	PROPN
ajlm-748	166	4	.	.	PUNCT
ajlm-748	167	1	1995;76(suppl	1995;76(suppl	PROPN
ajlm-748	167	2	2(0)):26	2(0)):26	NUM
ajlm-748	167	3	.	.	PUNCT
ajlm-748	168	1	li	li	PROPN
ajlm-748	168	2	jy	jy	PROPN
ajlm-748	168	3	,	,	PUNCT
ajlm-748	168	4	lo	lo	PROPN
ajlm-748	168	5	st	st	PROPN
ajlm-748	168	6	,	,	PUNCT
ajlm-748	168	7	ng	ng	PROPN
ajlm-748	168	8	cs	cs	PROPN
ajlm-748	168	9	.	.	PROPN
ajlm-748	168	10	molecular	molecular	ADJ
ajlm-748	168	11	detection	detection	NOUN
ajlm-748	168	12	of	of	ADP
ajlm-748	168	13	mycobacterium	mycobacterium	NOUN
ajlm-748	168	14	tuberculosis	tuberculosis	NOUN
ajlm-748	168	15	in	in	ADP
ajlm-748	168	16	tissues	tissue	NOUN
ajlm-748	168	17	showing	show	VERB
ajlm-748	168	18	granulomatous	granulomatous	ADJ
ajlm-748	168	19	inflammation	inflammation	NOUN
ajlm-748	168	20	without	without	ADP
ajlm-748	168	21	demonstrable	demonstrable	ADJ
ajlm-748	168	22	acid	acid	NOUN
ajlm-748	168	23	-	-	PUNCT
ajlm-748	168	24	fast	fast	ADJ
ajlm-748	168	25	bacilli	bacilli	NOUN
ajlm-748	168	26	.	.	PUNCT
ajlm-748	169	1	diagnostic	diagnostic	ADJ
ajlm-748	169	2	mol	mol	ADP
ajlm-748	169	3	pathol	pathol	NOUN
ajlm-748	169	4	.	.	PUNCT
ajlm-748	170	1	2000;9(2):67–74	2000;9(2):67–74	X
ajlm-748	170	2	.	.	PUNCT
ajlm-748	171	1	https://doi.org/10.1097/00019606-200006000-00001	https://doi.org/10.1097/00019606-200006000-00001	NOUN
ajlm-748	171	2	marchetti	marchetti	PROPN
ajlm-748	171	3	g	g	PROPN
ajlm-748	171	4	,	,	PUNCT
ajlm-748	171	5	gori	gori	PROPN
ajlm-748	171	6	a	a	X
ajlm-748	171	7	,	,	PUNCT
ajlm-748	171	8	catozzi	catozzi	NOUN
ajlm-748	171	9	l	l	NOUN
ajlm-748	171	10	,	,	PUNCT
ajlm-748	171	11	et	et	PROPN
ajlm-748	171	12	al	al	PROPN
ajlm-748	171	13	.	.	PUNCT
ajlm-748	171	14	evaluation	evaluation	NOUN
ajlm-748	171	15	of	of	ADP
ajlm-748	171	16	pcr	pcr	NOUN
ajlm-748	171	17	in	in	ADP
ajlm-748	171	18	detection	detection	NOUN
ajlm-748	171	19	of	of	ADP
ajlm-748	171	20	mycobacterium	mycobacterium	NOUN
ajlm-748	171	21	tuberculosis	tuberculosis	NOUN
ajlm-748	171	22	from	from	ADP
ajlm-748	171	23	formalin	formalin	NOUN
ajlm-748	171	24	-	-	PUNCT
ajlm-748	171	25	fixed	fix	VERB
ajlm-748	171	26	,	,	PUNCT
ajlm-748	171	27	paraffin	paraffin	NOUN
ajlm-748	171	28	-	-	PUNCT
ajlm-748	171	29	embedded	embed	VERB
ajlm-748	171	30	tissues	tissue	NOUN
ajlm-748	171	31	:	:	PUNCT
ajlm-748	171	32	comparison	comparison	NOUN
ajlm-748	171	33	of	of	ADP
ajlm-748	171	34	four	four	NUM
ajlm-748	171	35	amplification	amplification	NOUN
ajlm-748	171	36	assays	assay	NOUN
ajlm-748	171	37	.	.	PUNCT
ajlm-748	172	1	j	j	PROPN
ajlm-748	172	2	clin	clin	PROPN
ajlm-748	172	3	microbiol	microbiol	PROPN
ajlm-748	172	4	.	.	PUNCT
ajlm-748	173	1	1998;36(6):1512	1998;36(6):1512	PROPN
ajlm-748	173	2	.	.	PUNCT
ajlm-748	174	1	ghossein	ghossein	PROPN
ajlm-748	174	2	ra	ra	PROPN
ajlm-748	174	3	,	,	PUNCT
ajlm-748	174	4	ross	ross	PROPN
ajlm-748	174	5	dg	dg	PROPN
ajlm-748	174	6	,	,	PUNCT
ajlm-748	174	7	salomon	salomon	PROPN
ajlm-748	174	8	rn	rn	PROPN
ajlm-748	174	9	,	,	PUNCT
ajlm-748	174	10	rabson	rabson	PROPN
ajlm-748	174	11	ar	ar	PROPN
ajlm-748	174	12	.	.	PROPN
ajlm-748	174	13	rapid	rapid	ADJ
ajlm-748	174	14	detection	detection	NOUN
ajlm-748	174	15	and	and	CCONJ
ajlm-748	174	16	species	species	NOUN
ajlm-748	174	17	identification	identification	NOUN
ajlm-748	174	18	of	of	ADP
ajlm-748	174	19	mycobacteria	mycobacteria	NOUN
ajlm-748	174	20	in	in	ADP
ajlm-748	174	21	paraffin	paraffin	NOUN
ajlm-748	174	22	-	-	PUNCT
ajlm-748	174	23	embedded	embed	VERB
ajlm-748	174	24	tissues	tissue	NOUN
ajlm-748	174	25	by	by	ADP
ajlm-748	174	26	polymerase	polymerase	NOUN
ajlm-748	174	27	chain	chain	NOUN
ajlm-748	174	28	reaction	reaction	NOUN
ajlm-748	174	29	.	.	PUNCT
ajlm-748	175	1	diagn	diagn	NOUN
ajlm-748	175	2	mol	mol	ADP
ajlm-748	175	3	pathol	pathol	NOUN
ajlm-748	175	4	.	.	PUNCT
ajlm-748	176	1	1992;1(3):185–191	1992;1(3):185–191	X
ajlm-748	176	2	.	.	PUNCT
ajlm-748	177	1	https://doi.org/10.1097/00019606-199203000-00027	https://doi.org/10.1097/00019606-199203000-00027	PROPN
ajlm-748	177	2	lawn	lawn	PROPN
ajlm-748	177	3	sd	sd	PROPN
ajlm-748	177	4	,	,	PUNCT
ajlm-748	177	5	nichol	nichol	PROPN
ajlm-748	177	6	mp	mp	PROPN
ajlm-748	177	7	.	.	PUNCT
ajlm-748	178	1	xpert	xpert	PROPN
ajlm-748	178	2	mtb	mtb	PROPN
ajlm-748	178	3	/	/	SYM
ajlm-748	178	4	rif	rif	PROPN
ajlm-748	178	5	assay	assay	PROPN
ajlm-748	178	6	:	:	PUNCT
ajlm-748	178	7	development	development	NOUN
ajlm-748	178	8	,	,	PUNCT
ajlm-748	178	9	evaluation	evaluation	NOUN
ajlm-748	178	10	and	and	CCONJ
ajlm-748	178	11	implementation	implementation	NOUN
ajlm-748	178	12	of	of	ADP
ajlm-748	178	13	a	a	DET
ajlm-748	178	14	new	new	ADJ
ajlm-748	178	15	rapid	rapid	ADJ
ajlm-748	178	16	molecular	molecular	ADJ
ajlm-748	178	17	diagnostic	diagnostic	NOUN
ajlm-748	178	18	for	for	ADP
ajlm-748	178	19	tuberculosis	tuberculosis	NOUN
ajlm-748	178	20	and	and	CCONJ
ajlm-748	178	21	rifampicin	rifampicin	VERB
ajlm-748	178	22	resistance	resistance	NOUN
ajlm-748	178	23	.	.	PUNCT
ajlm-748	179	1	future	future	ADJ
ajlm-748	179	2	microbiol	microbiol	PROPN
ajlm-748	179	3	.	.	PUNCT
ajlm-748	180	1	2016;6(9):1067–1082	2016;6(9):1067–1082	X
ajlm-748	180	2	.	.	PUNCT
ajlm-748	181	1	https://doi.org/10.2217/fmb.11.84	https://doi.org/10.2217/fmb.11.84	PROPN
ajlm-748	181	2	melissa	melissa	PROPN
ajlm-748	181	3	bm	bm	PROPN
ajlm-748	181	4	,	,	PUNCT
ajlm-748	181	5	elena	elena	PROPN
ajlm-748	181	6	bp	bp	PROPN
ajlm-748	181	7	,	,	PUNCT
ajlm-748	181	8	michael	michael	PROPN
ajlm-748	181	9	gb	gb	PROPN
ajlm-748	181	10	,	,	PUNCT
ajlm-748	181	11	edward	edward	PROPN
ajlm-748	181	12	pc	pc	PROPN
ajlm-748	181	13	.	.	PUNCT
ajlm-748	182	1	performance	performance	NOUN
ajlm-748	182	2	of	of	ADP
ajlm-748	182	3	xpert	xpert	PROPN
ajlm-748	182	4	mtb	mtb	PROPN
ajlm-748	182	5	/	/	SYM
ajlm-748	182	6	rif	rif	PROPN
ajlm-748	182	7	ruo	ruo	PROPN
ajlm-748	182	8	assay	assay	PROPN
ajlm-748	182	9	and	and	CCONJ
ajlm-748	182	10	is6110	is6110	PROPN
ajlm-748	182	11	real	real	ADJ
ajlm-748	182	12	-	-	PUNCT
ajlm-748	182	13	time	time	NOUN
ajlm-748	182	14	pcr	pcr	NOUN
ajlm-748	182	15	for	for	ADP
ajlm-748	182	16	mycobacterium	mycobacterium	NOUN
ajlm-748	182	17	tuberculosis	tuberculosis	NOUN
ajlm-748	182	18	detection	detection	NOUN
ajlm-748	182	19	in	in	ADP
ajlm-748	182	20	clinical	clinical	ADJ
ajlm-748	182	21	samples	sample	NOUN
ajlm-748	182	22	.	.	PUNCT
ajlm-748	183	1	j	j	PROPN
ajlm-748	183	2	clin	clin	PROPN
ajlm-748	183	3	microbiol	microbiol	PROPN
ajlm-748	183	4	.	.	PUNCT
ajlm-748	184	1	2011;49(10):3458–3462	2011;49(10):3458–3462	X
ajlm-748	184	2	.	.	PUNCT
ajlm-748	185	1	https://doi.org/10.1128/jcm.05212-11	https://doi.org/10.1128/jcm.05212-11	VERB
ajlm-748	185	2	tortoli	tortoli	NUM
ajlm-748	185	3	e	e	NOUN
ajlm-748	185	4	,	,	PUNCT
ajlm-748	185	5	russo	russo	PROPN
ajlm-748	185	6	c	c	NOUN
ajlm-748	185	7	,	,	PUNCT
ajlm-748	185	8	piersimoni	piersimoni	NOUN
ajlm-748	185	9	c	c	X
ajlm-748	185	10	,	,	PUNCT
ajlm-748	185	11	et	et	PROPN
ajlm-748	185	12	al	al	PROPN
ajlm-748	185	13	.	.	PROPN
ajlm-748	186	1	clinical	clinical	ADJ
ajlm-748	186	2	validation	validation	NOUN
ajlm-748	186	3	of	of	ADP
ajlm-748	186	4	xpert	xpert	PROPN
ajlm-748	186	5	mtb	mtb	PROPN
ajlm-748	186	6	/	/	SYM
ajlm-748	186	7	rif	rif	PROPN
ajlm-748	186	8	for	for	ADP
ajlm-748	186	9	the	the	DET
ajlm-748	186	10	diagnosis	diagnosis	NOUN
ajlm-748	186	11	of	of	ADP
ajlm-748	186	12	extrapulmonary	extrapulmonary	ADJ
ajlm-748	186	13	tuberculosis	tuberculosis	NOUN
ajlm-748	186	14	.	.	PUNCT
ajlm-748	187	1	eur	eur	PROPN
ajlm-748	187	2	respir	respir	PROPN
ajlm-748	187	3	j.	j.	PROPN
ajlm-748	187	4	2012;40(2):442–447	2012;40(2):442–447	PROPN
ajlm-748	187	5	.	.	PUNCT
ajlm-748	187	6	https://doi.org/10.1183/09031936.00176311	https://doi.org/10.1183/09031936.00176311	PROPN
ajlm-748	187	7	vadwai	vadwai	PROPN
ajlm-748	187	8	v	v	PROPN
ajlm-748	187	9	,	,	PUNCT
ajlm-748	187	10	boehme	boehme	NOUN
ajlm-748	187	11	c	c	PROPN
ajlm-748	187	12	,	,	PUNCT
ajlm-748	187	13	nabeta	nabeta	ADV
ajlm-748	187	14	p	p	X
ajlm-748	187	15	,	,	PUNCT
ajlm-748	187	16	shetty	shetty	PROPN
ajlm-748	187	17	a	a	X
ajlm-748	187	18	,	,	PUNCT
ajlm-748	187	19	alland	alland	NOUN
ajlm-748	187	20	d	d	PROPN
ajlm-748	187	21	,	,	PUNCT
ajlm-748	187	22	rodrigues	rodrigues	PROPN
ajlm-748	187	23	c.	c.	PROPN
ajlm-748	187	24	xpert	xpert	PROPN
ajlm-748	187	25	mtb	mtb	PROPN
ajlm-748	187	26	/	/	SYM
ajlm-748	187	27	rif	rif	PROPN
ajlm-748	187	28	:	:	PUNCT
ajlm-748	187	29	a	a	DET
ajlm-748	187	30	new	new	ADJ
ajlm-748	187	31	pillar	pillar	NOUN
ajlm-748	187	32	in	in	ADP
ajlm-748	187	33	diagnosis	diagnosis	NOUN
ajlm-748	187	34	of	of	ADP
ajlm-748	187	35	extrapulmonary	extrapulmonary	ADJ
ajlm-748	187	36	tuberculosis	tuberculosis	NOUN
ajlm-748	187	37	?	?	PUNCT
ajlm-748	188	1	j	j	PROPN
ajlm-748	188	2	clin	clin	PROPN
ajlm-748	188	3	microbiol	microbiol	PROPN
ajlm-748	188	4	.	.	PUNCT
ajlm-748	189	1	2011;49(7):2540–2545	2011;49(7):2540–2545	NUM
ajlm-748	189	2	.	.	PUNCT
ajlm-748	190	1	https://doi.org/10.1128/jcm.02319-10	https://doi.org/10.1128/jcm.02319-10	X
ajlm-748	190	2	denkinger	denkinger	NOUN
ajlm-748	190	3	cm	cm	PROPN
ajlm-748	190	4	,	,	PUNCT
ajlm-748	190	5	schumacher	schumacher	PROPN
ajlm-748	190	6	sg	sg	PROPN
ajlm-748	190	7	,	,	PUNCT
ajlm-748	190	8	boehme	boehme	PROPN
ajlm-748	190	9	cc	cc	PROPN
ajlm-748	190	10	,	,	PUNCT
ajlm-748	190	11	dendukuri	dendukuri	PROPN
ajlm-748	190	12	n	n	CCONJ
ajlm-748	190	13	,	,	PUNCT
ajlm-748	190	14	pai	pai	PROPN
ajlm-748	190	15	m	m	PROPN
ajlm-748	190	16	,	,	PUNCT
ajlm-748	190	17	steingart	steingart	PROPN
ajlm-748	190	18	k.	k.	PROPN
ajlm-748	190	19	xpert	xpert	PROPN
ajlm-748	190	20	mtb	mtb	PROPN
ajlm-748	190	21	/	/	SYM
ajlm-748	190	22	rif	rif	PROPN
ajlm-748	190	23	assay	assay	NOUN
ajlm-748	190	24	for	for	ADP
ajlm-748	190	25	the	the	DET
ajlm-748	190	26	diagnosis	diagnosis	NOUN
ajlm-748	190	27	of	of	ADP
ajlm-748	190	28	extrapulmonary	extrapulmonary	ADJ
ajlm-748	190	29	tuberculosis	tuberculosis	NOUN
ajlm-748	190	30	:	:	PUNCT
ajlm-748	190	31	a	a	DET
ajlm-748	190	32	systematic	systematic	ADJ
ajlm-748	190	33	review	review	NOUN
ajlm-748	190	34	and	and	CCONJ
ajlm-748	190	35	meta	meta	ADJ
ajlm-748	190	36	-	-	PUNCT
ajlm-748	190	37	analysis	analysis	NOUN
ajlm-748	190	38	.	.	PUNCT
ajlm-748	191	1	eur	eur	PROPN
ajlm-748	191	2	respir	respir	PROPN
ajlm-748	191	3	j.	j.	PROPN
ajlm-748	191	4	2014;44(2):435–446	2014;44(2):435–446	PROPN
ajlm-748	191	5	.	.	PUNCT
ajlm-748	191	6	https://doi.org/10.1183/09031936.00007814	https://doi.org/10.1183/09031936.00007814	PROPN
ajlm-748	191	7	polepole	polepole	PROPN
ajlm-748	191	8	p	p	NOUN
ajlm-748	191	9	,	,	PUNCT
ajlm-748	191	10	kabwe	kabwe	PROPN
ajlm-748	191	11	m	m	PROPN
ajlm-748	191	12	,	,	PUNCT
ajlm-748	191	13	kasonde	kasonde	PROPN
ajlm-748	191	14	m	m	PROPN
ajlm-748	191	15	,	,	PUNCT
ajlm-748	191	16	et	et	PROPN
ajlm-748	191	17	al	al	PROPN
ajlm-748	191	18	.	.	PUNCT
ajlm-748	192	1	performance	performance	NOUN
ajlm-748	192	2	of	of	ADP
ajlm-748	192	3	the	the	DET
ajlm-748	192	4	xpert	xpert	PROPN
ajlm-748	192	5	mtb	mtb	PROPN
ajlm-748	192	6	/	/	SYM
ajlm-748	192	7	rif	rif	PROPN
ajlm-748	192	8	assay	assay	NOUN
ajlm-748	192	9	in	in	ADP
ajlm-748	192	10	the	the	DET
ajlm-748	192	11	diagnosis	diagnosis	NOUN
ajlm-748	192	12	of	of	ADP
ajlm-748	192	13	tuberculosis	tuberculosis	NOUN
ajlm-748	192	14	in	in	ADP
ajlm-748	192	15	formalin	formalin	NOUN
ajlm-748	192	16	-	-	PUNCT
ajlm-748	192	17	fixed	fix	VERB
ajlm-748	192	18	,	,	PUNCT
ajlm-748	192	19	paraffin	paraffin	NOUN
ajlm-748	192	20	-	-	PUNCT
ajlm-748	192	21	embedded	embed	VERB
ajlm-748	192	22	tissues	tissue	NOUN
ajlm-748	192	23	.	.	PUNCT
ajlm-748	193	1	int	int	NOUN
ajlm-748	193	2	j	j	PROPN
ajlm-748	193	3	myocbacteriol	myocbacteriol	PROPN
ajlm-748	193	4	.	.	PUNCT
ajlm-748	194	1	2017;6(1):87–93	2017;6(1):87–93	NUM
ajlm-748	194	2	.	.	PUNCT
ajlm-748	195	1	https://doi.org/10.4103/2212-5531.201892	https://doi.org/10.4103/2212-5531.201892	PROPN
ajlm-748	195	2	frevel	frevel	PROPN
ajlm-748	195	3	t	t	PROPN
ajlm-748	195	4	,	,	PUNCT
ajlm-748	195	5	schäfer	schäfer	PROPN
ajlm-748	195	6	kl	kl	PROPN
ajlm-748	195	7	,	,	PUNCT
ajlm-748	195	8	tötsch	tötsch	PROPN
ajlm-748	195	9	m	m	PROPN
ajlm-748	195	10	,	,	PUNCT
ajlm-748	195	11	böcker	böcker	PROPN
ajlm-748	195	12	w	w	PROPN
ajlm-748	195	13	,	,	PUNCT
ajlm-748	195	14	dockhorn	dockhorn	ADJ
ajlm-748	195	15	-	-	PUNCT
ajlm-748	195	16	dworniczak	dworniczak	NOUN
ajlm-748	195	17	b.	b.	PROPN
ajlm-748	195	18	pcr	pcr	PROPN
ajlm-748	195	19	based	base	VERB
ajlm-748	195	20	detection	detection	NOUN
ajlm-748	195	21	of	of	ADP
ajlm-748	195	22	mycobacteria	mycobacteria	NOUN
ajlm-748	195	23	in	in	ADP
ajlm-748	195	24	paraffin	paraffin	NOUN
ajlm-748	195	25	wax	wax	NOUN
ajlm-748	195	26	embedded	embed	VERB
ajlm-748	195	27	material	material	NOUN
ajlm-748	195	28	routinely	routinely	ADV
ajlm-748	195	29	processed	process	VERB
ajlm-748	195	30	for	for	ADP
ajlm-748	195	31	morphological	morphological	ADJ
ajlm-748	195	32	examination	examination	NOUN
ajlm-748	195	33	.	.	PUNCT
ajlm-748	196	1	j	j	PROPN
ajlm-748	196	2	clin	clin	PROPN
ajlm-748	196	3	pathol	pathol	NOUN
ajlm-748	196	4	mol	mol	ADP
ajlm-748	196	5	pathol	pathol	NOUN
ajlm-748	196	6	.	.	PUNCT
ajlm-748	197	1	1999;(52):283–288	1999;(52):283–288	X
ajlm-748	197	2	.	.	PUNCT
ajlm-748	197	3	williams	williams	PROPN
ajlm-748	197	4	c	c	PROPN
ajlm-748	197	5	,	,	PUNCT
ajlm-748	197	6	ponten	ponten	VERB
ajlm-748	197	7	f	f	PROPN
ajlm-748	197	8	,	,	PUNCT
ajlm-748	197	9	moberg	moberg	PROPN
ajlm-748	197	10	c	c	X
ajlm-748	197	11	,	,	PUNCT
ajlm-748	197	12	et	et	PROPN
ajlm-748	197	13	al	al	PROPN
ajlm-748	197	14	.	.	PROPN
ajlm-748	197	15	high	high	ADJ
ajlm-748	197	16	frequency	frequency	NOUN
ajlm-748	197	17	of	of	ADP
ajlm-748	197	18	sequence	sequence	NOUN
ajlm-748	197	19	alterations	alteration	NOUN
ajlm-748	197	20	is	be	AUX
ajlm-748	197	21	due	due	ADJ
ajlm-748	197	22	to	to	ADP
ajlm-748	197	23	fixation	fixation	NOUN
ajlm-748	197	24	of	of	ADP
ajlm-748	197	25	archival	archival	NOUN
ajlm-748	197	26	specimens	specimen	NOUN
ajlm-748	197	27	.	.	PUNCT
ajlm-748	197	28	am	be	AUX
ajlm-748	197	29	j	j	PROPN
ajlm-748	197	30	pathol	pathol	NOUN
ajlm-748	197	31	.	.	PUNCT
ajlm-748	198	1	1999;155:1467–1471	1999;155:1467–1471	NUM
ajlm-748	198	2	.	.	PUNCT
ajlm-748	199	1	https://doi.org/10.1016/s0002-9440(10)65461-2	https://doi.org/10.1016/s0002-9440(10)65461-2	PROPN
ajlm-748	199	2	jonathan	jonathan	PROPN
ajlm-748	199	3	ben	ben	PROPN
ajlm-748	199	4	-	-	PUNCT
ajlm-748	199	5	ezra	ezra	PROPN
ajlm-748	199	6	,	,	PUNCT
ajlm-748	199	7	johnson	johnson	PROPN
ajlm-748	199	8	da	da	PROPN
ajlm-748	199	9	,	,	PUNCT
ajlm-748	199	10	rossi	rossi	PROPN
ajlm-748	199	11	j	j	PROPN
ajlm-748	199	12	,	,	PUNCT
ajlm-748	199	13	cook	cook	VERB
ajlm-748	199	14	n	n	PRON
ajlm-748	199	15	,	,	PUNCT
ajlm-748	199	16	wu	wu	PROPN
ajlm-748	199	17	a.	a.	NOUN
ajlm-748	199	18	effect	effect	NOUN
ajlm-748	199	19	of	of	ADP
ajlm-748	199	20	fixation	fixation	NOUN
ajlm-748	199	21	on	on	ADP
ajlm-748	199	22	the	the	DET
ajlm-748	199	23	amplification	amplification	NOUN
ajlm-748	199	24	of	of	ADP
ajlm-748	199	25	nucleic	nucleic	ADJ
ajlm-748	199	26	acids	acid	NOUN
ajlm-748	199	27	from	from	ADP
ajlm-748	199	28	paraffinembedded	paraffinembedde	VERB
ajlm-748	199	29	material	material	NOUN
ajlm-748	199	30	by	by	ADP
ajlm-748	199	31	the	the	DET
ajlm-748	199	32	polymerase	polymerase	NOUN
ajlm-748	199	33	chain	chain	NOUN
ajlm-748	199	34	reaction	reaction	NOUN
ajlm-748	199	35	.	.	PUNCT
ajlm-748	200	1	j	j	PROPN
ajlm-748	200	2	histochem	histochem	PROPN
ajlm-748	200	3	cytochem	cytochem	PROPN
ajlm-748	200	4	.	.	PUNCT
ajlm-748	201	1	1991;39(3):351–354	1991;39(3):351–354	X
ajlm-748	201	2	.	.	PUNCT
ajlm-748	202	1	https://doi.org/10.1177/39.3.1704393	https://doi.org/10.1177/39.3.1704393	PROPN
ajlm-748	202	2	sato	sato	PROPN
ajlm-748	202	3	y	y	PROPN
ajlm-748	202	4	,	,	PUNCT
ajlm-748	202	5	sugie	sugie	NOUN
ajlm-748	202	6	r	r	NOUN
ajlm-748	202	7	,	,	PUNCT
ajlm-748	202	8	tsuchiya	tsuchiya	PROPN
ajlm-748	202	9	b	b	PROPN
ajlm-748	202	10	,	,	PUNCT
ajlm-748	202	11	kameya	kameya	PROPN
ajlm-748	202	12	t	t	PROPN
ajlm-748	202	13	,	,	PUNCT
ajlm-748	202	14	natori	natori	PROPN
ajlm-748	202	15	m	m	PROPN
ajlm-748	202	16	,	,	PUNCT
ajlm-748	202	17	mukai	mukai	PROPN
ajlm-748	202	18	k.	k.	PROPN
ajlm-748	202	19	comparison	comparison	NOUN
ajlm-748	202	20	of	of	ADP
ajlm-748	202	21	the	the	DET
ajlm-748	202	22	dna	dna	PROPN
ajlm-748	202	23	extraction	extraction	NOUN
ajlm-748	202	24	methods	method	NOUN
ajlm-748	202	25	for	for	ADP
ajlm-748	202	26	polymerase	polymerase	NOUN
ajlm-748	202	27	chain	chain	NOUN
ajlm-748	202	28	reaction	reaction	NOUN
ajlm-748	202	29	amplification	amplification	NOUN
ajlm-748	202	30	from	from	ADP
ajlm-748	202	31	formalin	formalin	NOUN
ajlm-748	202	32	-	-	PUNCT
ajlm-748	202	33	fixed	fix	VERB
ajlm-748	202	34	and	and	CCONJ
ajlm-748	202	35	paraffin	paraffin	NOUN
ajlm-748	202	36	-	-	PUNCT
ajlm-748	202	37	embedded	embed	VERB
ajlm-748	202	38	tissues	tissue	NOUN
ajlm-748	202	39	.	.	PUNCT
ajlm-748	203	1	diagn	diagn	NOUN
ajlm-748	203	2	mol	mol	ADP
ajlm-748	203	3	pathol	pathol	NOUN
ajlm-748	203	4	.	.	PUNCT
ajlm-748	204	1	2001;10(4):265–271	2001;10(4):265–271	X
ajlm-748	204	2	.	.	PUNCT
ajlm-748	205	1	https://doi.org/10.1097/00019606-200112000-00009	https://doi.org/10.1097/00019606-200112000-00009	PROPN
ajlm-748	205	2	azov	azov	PROPN
ajlm-748	205	3	a	a	PROPN
ajlm-748	205	4	,	,	PUNCT
ajlm-748	205	5	koch	koch	PROPN
ajlm-748	205	6	j	j	PROPN
ajlm-748	205	7	,	,	PUNCT
ajlm-748	205	8	hamilton	hamilton	PROPN
ajlm-748	205	9	-	-	PUNCT
ajlm-748	205	10	dutoit	dutoit	PROPN
ajlm-748	205	11	sj	sj	PROPN
ajlm-748	205	12	.	.	PROPN
ajlm-748	205	13	improved	improved	ADJ
ajlm-748	205	14	diagnosis	diagnosis	NOUN
ajlm-748	205	15	of	of	ADP
ajlm-748	205	16	mycobacterial	mycobacterial	ADJ
ajlm-748	205	17	infections	infection	NOUN
ajlm-748	205	18	in	in	ADP
ajlm-748	205	19	formalin	formalin	NOUN
ajlm-748	205	20	-	-	PUNCT
ajlm-748	205	21	fixed	fix	VERB
ajlm-748	205	22	and	and	CCONJ
ajlm-748	205	23	paraffin	paraffin	NOUN
ajlm-748	205	24	-	-	PUNCT
ajlm-748	205	25	embedded	embed	VERB
ajlm-748	205	26	sections	section	NOUN
ajlm-748	205	27	with	with	ADP
ajlm-748	205	28	nested	nested	ADJ
ajlm-748	205	29	polymerase	polymerase	NOUN
ajlm-748	205	30	chain	chain	NOUN
ajlm-748	205	31	reaction	reaction	NOUN
ajlm-748	205	32	.	.	PUNCT
ajlm-748	206	1	apmis	apmis	PROPN
ajlm-748	206	2	.	.	PUNCT
ajlm-748	207	1	2005;113(9):586–593	2005;113(9):586–593	NUM
ajlm-748	207	2	.	.	PUNCT
ajlm-748	207	3	https://doi.org/10.1111/j.1600-0463.2005.apm_234.x	https://doi.org/10.1111/j.1600-0463.2005.apm_234.x	X
ajlm-748	208	1	yagmur	yagmur	PROPN
ajlm-748	208	2	g	g	PROPN
ajlm-748	208	3	,	,	PUNCT
ajlm-748	208	4	albayrak	albayrak	PROPN
ajlm-748	208	5	n	n	CCONJ
ajlm-748	208	6	,	,	PUNCT
ajlm-748	208	7	das	das	PROPN
ajlm-748	208	8	t	t	PROPN
ajlm-748	208	9	,	,	PUNCT
ajlm-748	208	10	yildirim	yildirim	PROPN
ajlm-748	208	11	m	m	PROPN
ajlm-748	208	12	,	,	PUNCT
ajlm-748	208	13	ozgün	ozgün	VERB
ajlm-748	208	14	a	a	PRON
ajlm-748	208	15	,	,	PUNCT
ajlm-748	208	16	buyuk	buyuk	PROPN
ajlm-748	208	17	y.	y.	PROPN
ajlm-748	208	18	comparison	comparison	NOUN
ajlm-748	208	19	of	of	ADP
ajlm-748	208	20	two	two	NUM
ajlm-748	208	21	different	different	ADJ
ajlm-748	208	22	real	real	ADJ
ajlm-748	208	23	-	-	PUNCT
ajlm-748	208	24	time	time	NOUN
ajlm-748	208	25	pcr	pcr	NOUN
ajlm-748	208	26	systems	system	NOUN
ajlm-748	208	27	in	in	ADP
ajlm-748	208	28	postmortem	postmortem	NOUN
ajlm-748	208	29	diagnosis	diagnosis	NOUN
ajlm-748	208	30	of	of	ADP
ajlm-748	208	31	tuberculosis	tuberculosis	NOUN
ajlm-748	208	32	in	in	ADP
ajlm-748	208	33	paraffin	paraffin	NOUN
ajlm-748	208	34	-	-	PUNCT
ajlm-748	208	35	embedded	embed	VERB
ajlm-748	208	36	tissues	tissue	NOUN
ajlm-748	208	37	.	.	PUNCT
ajlm-748	209	1	mikrobiyol	mikrobiyol	PROPN
ajlm-748	209	2	bul	bul	PROPN
ajlm-748	209	3	.	.	PUNCT
ajlm-748	210	1	2014;48(4):577–584	2014;48(4):577–584	NUM
ajlm-748	210	2	.	.	PUNCT
ajlm-748	211	1	https://doi.org/10.5578/mb.8299	https://doi.org/10.5578/mb.8299	NOUN