id	sid	tid	token	lemma	pos
ajlm-760	1	1	abstract	abstract	ADJ
ajlm-760	1	2	introduction	introduction	NOUN
ajlm-760	1	3	nontyphoidal	nontyphoidal	PROPN
ajlm-760	1	4	salmonella	salmonella	PROPN
ajlm-760	1	5	typhoidal	typhoidal	NOUN
ajlm-760	1	6	salmonella	salmonella	PROPN
ajlm-760	1	7	vibrio	vibrio	ADJ
ajlm-760	1	8	cholerae	cholerae	PROPN
ajlm-760	1	9	shigella	shigella	PROPN
ajlm-760	1	10	species	species	PROPN
ajlm-760	1	11	escherichia	escherichia	NOUN
ajlm-760	1	12	coli	coli	NOUN
ajlm-760	1	13	acknowledgements	acknowledgement	NOUN
ajlm-760	1	14	references	reference	NOUN
ajlm-760	1	15	about	about	ADP
ajlm-760	1	16	the	the	DET
ajlm-760	1	17	author(s	author(s	NOUN
ajlm-760	1	18	)	)	PUNCT
ajlm-760	1	19	anthony	anthony	PROPN
ajlm-760	1	20	m.	m.	PROPN
ajlm-760	1	21	smith	smith	PROPN
ajlm-760	1	22	centre	centre	PROPN
ajlm-760	1	23	for	for	ADP
ajlm-760	1	24	enteric	enteric	ADJ
ajlm-760	1	25	diseases	disease	NOUN
ajlm-760	1	26	,	,	PUNCT
ajlm-760	1	27	national	national	PROPN
ajlm-760	1	28	institute	institute	NOUN
ajlm-760	1	29	for	for	ADP
ajlm-760	1	30	communicable	communicable	NOUN
ajlm-760	1	31	diseases	disease	NOUN
ajlm-760	1	32	,	,	PUNCT
ajlm-760	1	33	national	national	PROPN
ajlm-760	1	34	health	health	PROPN
ajlm-760	1	35	laboratory	laboratory	PROPN
ajlm-760	1	36	service	service	PROPN
ajlm-760	1	37	,	,	PUNCT
ajlm-760	1	38	johannesburg	johannesburg	PROPN
ajlm-760	1	39	,	,	PUNCT
ajlm-760	1	40	south	south	PROPN
ajlm-760	1	41	africa	africa	PROPN
ajlm-760	1	42	faculty	faculty	PROPN
ajlm-760	1	43	of	of	ADP
ajlm-760	1	44	health	health	NOUN
ajlm-760	1	45	sciences	sciences	PROPN
ajlm-760	1	46	,	,	PUNCT
ajlm-760	1	47	university	university	NOUN
ajlm-760	1	48	of	of	ADP
ajlm-760	1	49	the	the	DET
ajlm-760	1	50	witwatersrand	witwatersrand	NOUN
ajlm-760	1	51	,	,	PUNCT
ajlm-760	1	52	johannesburg	johannesburg	PROPN
ajlm-760	1	53	,	,	PUNCT
ajlm-760	1	54	south	south	PROPN
ajlm-760	1	55	africa	africa	PROPN
ajlm-760	1	56	citation	citation	PROPN
ajlm-760	1	57	smith	smith	PROPN
ajlm-760	1	58	am	am	PROPN
ajlm-760	1	59	.	.	PUNCT
ajlm-760	2	1	review	review	NOUN
ajlm-760	2	2	of	of	ADP
ajlm-760	2	3	molecular	molecular	ADJ
ajlm-760	2	4	subtyping	subtyping	NOUN
ajlm-760	2	5	methodologies	methodology	NOUN
ajlm-760	2	6	used	use	VERB
ajlm-760	2	7	to	to	PART
ajlm-760	2	8	investigate	investigate	VERB
ajlm-760	2	9	outbreaks	outbreak	NOUN
ajlm-760	2	10	due	due	ADJ
ajlm-760	2	11	to	to	ADP
ajlm-760	2	12	multidrug	multidrug	VERB
ajlm-760	2	13	-	-	PUNCT
ajlm-760	2	14	resistant	resistant	ADJ
ajlm-760	2	15	enteric	enteric	ADJ
ajlm-760	2	16	bacterial	bacterial	ADJ
ajlm-760	2	17	pathogens	pathogen	NOUN
ajlm-760	2	18	in	in	ADP
ajlm-760	2	19	sub	sub	ADJ
ajlm-760	2	20	-	-	ADJ
ajlm-760	2	21	saharan	saharan	ADJ
ajlm-760	2	22	africa	africa	PROPN
ajlm-760	2	23	.	.	PUNCT
ajlm-760	3	1	afr	afr	PROPN
ajlm-760	3	2	j	j	PROPN
ajlm-760	3	3	lab	lab	PROPN
ajlm-760	3	4	med	med	PROPN
ajlm-760	3	5	.	.	PUNCT
ajlm-760	3	6	2019;8(1	2019;8(1	NOUN
ajlm-760	3	7	)	)	PUNCT
ajlm-760	3	8	,	,	PUNCT
ajlm-760	3	9	a760	a760	PROPN
ajlm-760	3	10	.	.	PUNCT
ajlm-760	4	1	https://doi.org/10.4102/ajlm.v8i1.760	https://doi.org/10.4102/ajlm.v8i1.760	PROPN
ajlm-760	4	2	review	review	NOUN
ajlm-760	4	3	article	article	NOUN
ajlm-760	4	4	review	review	NOUN
ajlm-760	4	5	of	of	ADP
ajlm-760	4	6	molecular	molecular	ADJ
ajlm-760	4	7	subtyping	subtyping	NOUN
ajlm-760	4	8	methodologies	methodology	NOUN
ajlm-760	4	9	used	use	VERB
ajlm-760	4	10	to	to	PART
ajlm-760	4	11	investigate	investigate	VERB
ajlm-760	4	12	outbreaks	outbreak	NOUN
ajlm-760	4	13	due	due	ADJ
ajlm-760	4	14	to	to	ADP
ajlm-760	4	15	multidrug	multidrug	VERB
ajlm-760	4	16	-	-	PUNCT
ajlm-760	4	17	resistant	resistant	ADJ
ajlm-760	4	18	enteric	enteric	ADJ
ajlm-760	4	19	bacterial	bacterial	ADJ
ajlm-760	4	20	pathogens	pathogen	NOUN
ajlm-760	4	21	in	in	ADP
ajlm-760	4	22	sub	sub	ADJ
ajlm-760	4	23	-	-	ADJ
ajlm-760	4	24	saharan	saharan	ADJ
ajlm-760	4	25	africa	africa	PROPN
ajlm-760	4	26	anthony	anthony	PROPN
ajlm-760	4	27	m.	m.	PROPN
ajlm-760	4	28	smith	smith	PROPN
ajlm-760	4	29	received	receive	VERB
ajlm-760	4	30	:	:	PUNCT
ajlm-760	4	31	23	23	NUM
ajlm-760	4	32	jan	jan	PROPN
ajlm-760	4	33	.	.	PROPN
ajlm-760	4	34	2018	2018	NUM
ajlm-760	4	35	;	;	PUNCT
ajlm-760	4	36	accepted	accept	VERB
ajlm-760	4	37	:	:	PUNCT
ajlm-760	4	38	25	25	NUM
ajlm-760	4	39	sept	sept	PROPN
ajlm-760	4	40	.	.	PROPN
ajlm-760	4	41	2018	2018	NUM
ajlm-760	4	42	;	;	PUNCT
ajlm-760	4	43	published	publish	VERB
ajlm-760	4	44	:	:	PUNCT
ajlm-760	4	45	14	14	NUM
ajlm-760	4	46	mar	mar	PROPN
ajlm-760	4	47	.	.	PROPN
ajlm-760	5	1	2019	2019	NUM
ajlm-760	6	1	copyright	copyright	NOUN
ajlm-760	6	2	:	:	PUNCT
ajlm-760	6	3	©	©	PROPN
ajlm-760	6	4	2019	2019	NUM
ajlm-760	6	5	.	.	PUNCT
ajlm-760	7	1	the	the	DET
ajlm-760	7	2	author(s	author(s	PROPN
ajlm-760	7	3	)	)	PUNCT
ajlm-760	7	4	.	.	PUNCT
ajlm-760	8	1	licensee	licensee	NOUN
ajlm-760	8	2	:	:	PUNCT
ajlm-760	8	3	aosis	aosis	NOUN
ajlm-760	8	4	.	.	PUNCT
ajlm-760	9	1	this	this	PRON
ajlm-760	9	2	is	be	AUX
ajlm-760	9	3	an	an	DET
ajlm-760	9	4	open	open	ADJ
ajlm-760	9	5	access	access	NOUN
ajlm-760	9	6	article	article	NOUN
ajlm-760	9	7	distributed	distribute	VERB
ajlm-760	9	8	under	under	ADP
ajlm-760	9	9	the	the	DET
ajlm-760	9	10	terms	term	NOUN
ajlm-760	9	11	of	of	ADP
ajlm-760	9	12	the	the	DET
ajlm-760	9	13	creative	creative	ADJ
ajlm-760	9	14	commons	common	NOUN
ajlm-760	9	15	attribution	attribution	NOUN
ajlm-760	9	16	license	license	NOUN
ajlm-760	9	17	,	,	PUNCT
ajlm-760	9	18	which	which	PRON
ajlm-760	9	19	permits	permit	VERB
ajlm-760	9	20	unrestricted	unrestricted	ADJ
ajlm-760	9	21	use	use	NOUN
ajlm-760	9	22	,	,	PUNCT
ajlm-760	9	23	distribution	distribution	NOUN
ajlm-760	9	24	,	,	PUNCT
ajlm-760	9	25	and	and	CCONJ
ajlm-760	9	26	reproduction	reproduction	NOUN
ajlm-760	9	27	in	in	ADP
ajlm-760	9	28	any	any	DET
ajlm-760	9	29	medium	medium	NOUN
ajlm-760	9	30	,	,	PUNCT
ajlm-760	9	31	provided	provide	VERB
ajlm-760	9	32	the	the	DET
ajlm-760	9	33	original	original	ADJ
ajlm-760	9	34	work	work	NOUN
ajlm-760	9	35	is	be	AUX
ajlm-760	9	36	properly	properly	ADV
ajlm-760	9	37	cited	cite	VERB
ajlm-760	9	38	.	.	PUNCT
ajlm-760	10	1	abstract	abstract	ADJ
ajlm-760	10	2	background	background	NOUN
ajlm-760	10	3	:	:	PUNCT
ajlm-760	10	4	in	in	ADP
ajlm-760	10	5	sub	sub	ADJ
ajlm-760	10	6	-	-	ADJ
ajlm-760	10	7	saharan	saharan	ADJ
ajlm-760	10	8	africa	africa	PROPN
ajlm-760	10	9	,	,	PUNCT
ajlm-760	10	10	molecular	molecular	ADJ
ajlm-760	10	11	epidemiological	epidemiological	ADJ
ajlm-760	10	12	investigation	investigation	NOUN
ajlm-760	10	13	of	of	ADP
ajlm-760	10	14	outbreaks	outbreak	NOUN
ajlm-760	10	15	caused	cause	VERB
ajlm-760	10	16	by	by	ADP
ajlm-760	10	17	antimicrobial	antimicrobial	ADJ
ajlm-760	10	18	-	-	PUNCT
ajlm-760	10	19	resistant	resistant	ADJ
ajlm-760	10	20	enteric	enteric	ADJ
ajlm-760	10	21	bacterial	bacterial	ADJ
ajlm-760	10	22	pathogens	pathogen	NOUN
ajlm-760	10	23	have	have	AUX
ajlm-760	10	24	mostly	mostly	ADV
ajlm-760	10	25	been	be	AUX
ajlm-760	10	26	described	describe	VERB
ajlm-760	10	27	for	for	ADP
ajlm-760	10	28	salmonella	salmonella	NOUN
ajlm-760	10	29	species	specie	NOUN
ajlm-760	10	30	,	,	PUNCT
ajlm-760	10	31	vibrio	vibrio	ADJ
ajlm-760	10	32	cholerae	cholerae	PROPN
ajlm-760	10	33	,	,	PUNCT
ajlm-760	10	34	shigella	shigella	PROPN
ajlm-760	10	35	species	specie	NOUN
ajlm-760	10	36	and	and	CCONJ
ajlm-760	10	37	escherichia	escherichia	NOUN
ajlm-760	10	38	coli	coli	NOUN
ajlm-760	10	39	.	.	PUNCT
ajlm-760	11	1	for	for	ADP
ajlm-760	11	2	these	these	DET
ajlm-760	11	3	organisms	organism	NOUN
ajlm-760	11	4	,	,	PUNCT
ajlm-760	11	5	i	i	PRON
ajlm-760	11	6	reviewed	review	VERB
ajlm-760	11	7	all	all	DET
ajlm-760	11	8	publications	publication	NOUN
ajlm-760	11	9	describing	describe	VERB
ajlm-760	11	10	the	the	DET
ajlm-760	11	11	use	use	NOUN
ajlm-760	11	12	of	of	ADP
ajlm-760	11	13	molecular	molecular	ADJ
ajlm-760	11	14	subtyping	subtyping	NOUN
ajlm-760	11	15	methodologies	methodology	NOUN
ajlm-760	11	16	to	to	PART
ajlm-760	11	17	investigate	investigate	VERB
ajlm-760	11	18	outbreaks	outbreak	NOUN
ajlm-760	11	19	caused	cause	VERB
ajlm-760	11	20	by	by	ADP
ajlm-760	11	21	multidrug	multidrug	NOUN
ajlm-760	11	22	-	-	PUNCT
ajlm-760	11	23	resistant	resistant	ADJ
ajlm-760	11	24	(	(	PUNCT
ajlm-760	11	25	mdr	mdr	NOUN
ajlm-760	11	26	)	)	PUNCT
ajlm-760	11	27	enteric	enteric	ADJ
ajlm-760	11	28	bacterial	bacterial	ADJ
ajlm-760	11	29	infections	infection	NOUN
ajlm-760	11	30	.	.	PUNCT
ajlm-760	12	1	objectives	objective	NOUN
ajlm-760	12	2	:	:	PUNCT
ajlm-760	12	3	to	to	PART
ajlm-760	12	4	describe	describe	VERB
ajlm-760	12	5	the	the	DET
ajlm-760	12	6	use	use	NOUN
ajlm-760	12	7	of	of	ADP
ajlm-760	12	8	molecular	molecular	ADJ
ajlm-760	12	9	subtyping	subtyping	NOUN
ajlm-760	12	10	methodologies	methodology	NOUN
ajlm-760	12	11	to	to	PART
ajlm-760	12	12	investigate	investigate	VERB
ajlm-760	12	13	outbreaks	outbreak	NOUN
ajlm-760	12	14	caused	cause	VERB
ajlm-760	12	15	by	by	ADP
ajlm-760	12	16	mdr	mdr	PROPN
ajlm-760	12	17	enteric	enteric	ADJ
ajlm-760	12	18	bacterial	bacterial	ADJ
ajlm-760	12	19	pathogens	pathogen	NOUN
ajlm-760	12	20	in	in	ADP
ajlm-760	12	21	sub	sub	ADJ
ajlm-760	12	22	-	-	ADJ
ajlm-760	12	23	saharan	saharan	ADJ
ajlm-760	12	24	africa	africa	PROPN
ajlm-760	12	25	and	and	CCONJ
ajlm-760	12	26	to	to	PART
ajlm-760	12	27	describe	describe	VERB
ajlm-760	12	28	the	the	DET
ajlm-760	12	29	current	current	ADJ
ajlm-760	12	30	status	status	NOUN
ajlm-760	12	31	of	of	ADP
ajlm-760	12	32	molecular	molecular	ADJ
ajlm-760	12	33	subtyping	subtype	VERB
ajlm-760	12	34	capabilities	capability	NOUN
ajlm-760	12	35	in	in	ADP
ajlm-760	12	36	the	the	DET
ajlm-760	12	37	region	region	NOUN
ajlm-760	12	38	.	.	PUNCT
ajlm-760	13	1	methods	method	NOUN
ajlm-760	13	2	:	:	PUNCT
ajlm-760	13	3	a	a	DET
ajlm-760	13	4	pubmed	pubmed	PROPN
ajlm-760	13	5	database	database	PROPN
ajlm-760	13	6	literature	literature	PROPN
ajlm-760	13	7	search	search	PROPN
ajlm-760	13	8	(	(	PUNCT
ajlm-760	13	9	english	english	ADJ
ajlm-760	13	10	language	language	NOUN
ajlm-760	13	11	only	only	ADV
ajlm-760	13	12	)	)	PUNCT
ajlm-760	13	13	was	be	AUX
ajlm-760	13	14	performed	perform	VERB
ajlm-760	13	15	using	use	VERB
ajlm-760	13	16	the	the	DET
ajlm-760	13	17	search	search	NOUN
ajlm-760	13	18	strings	string	NOUN
ajlm-760	13	19	:	:	PUNCT
ajlm-760	13	20	‘	'	PUNCT
ajlm-760	13	21	africa	africa	PROPN
ajlm-760	13	22	outbreak	outbreak	PROPN
ajlm-760	13	23	mdr	mdr	PROPN
ajlm-760	13	24	’	'	PUNCT
ajlm-760	13	25	,	,	PUNCT
ajlm-760	13	26	‘	'	PUNCT
ajlm-760	13	27	africa	africa	PROPN
ajlm-760	13	28	outbreak	outbreak	PROPN
ajlm-760	13	29	multi	multi	PROPN
ajlm-760	13	30	’	'	PUNCT
ajlm-760	13	31	,	,	PUNCT
ajlm-760	13	32	‘	'	PUNCT
ajlm-760	13	33	africa	africa	PROPN
ajlm-760	13	34	outbreak	outbreak	PROPN
ajlm-760	13	35	multidrug	multidrug	NOUN
ajlm-760	13	36	’	'	PUNCT
ajlm-760	13	37	,	,	PUNCT
ajlm-760	13	38	‘	'	PUNCT
ajlm-760	13	39	africa	africa	PROPN
ajlm-760	13	40	outbreak	outbreak	PROPN
ajlm-760	13	41	multi	multi	PROPN
ajlm-760	13	42	drug	drug	PROPN
ajlm-760	13	43	’	'	PUNCT
ajlm-760	13	44	,	,	PUNCT
ajlm-760	13	45	‘	'	PUNCT
ajlm-760	13	46	africa	africa	PROPN
ajlm-760	13	47	outbreak	outbreak	PROPN
ajlm-760	13	48	resistance	resistance	PROPN
ajlm-760	13	49	’	'	PUNCT
ajlm-760	13	50	,	,	PUNCT
ajlm-760	13	51	‘	'	PUNCT
ajlm-760	13	52	africa	africa	PROPN
ajlm-760	13	53	outbreak	outbreak	NOUN
ajlm-760	13	54	resistant	resistant	ADJ
ajlm-760	13	55	’	'	PUNCT
ajlm-760	13	56	,	,	PUNCT
ajlm-760	13	57	‘	'	PUNCT
ajlm-760	13	58	africa	africa	PROPN
ajlm-760	13	59	outbreak	outbreak	PROPN
ajlm-760	13	60	drug	drug	PROPN
ajlm-760	13	61	’	'	PUNCT
ajlm-760	13	62	,	,	PUNCT
ajlm-760	13	63	‘	'	PUNCT
ajlm-760	13	64	africa	africa	PROPN
ajlm-760	13	65	outbreak	outbreak	PROPN
ajlm-760	13	66	antibiotic	antibiotic	PROPN
ajlm-760	13	67	’	'	PUNCT
ajlm-760	13	68	,	,	PUNCT
ajlm-760	13	69	‘	'	PUNCT
ajlm-760	13	70	africa	africa	PROPN
ajlm-760	13	71	outbreak	outbreak	PROPN
ajlm-760	13	72	antimicrobial	antimicrobial	NOUN
ajlm-760	13	73	’	'	PUNCT
ajlm-760	13	74	.	.	PUNCT
ajlm-760	14	1	these	these	DET
ajlm-760	14	2	search	search	NOUN
ajlm-760	14	3	strings	string	NOUN
ajlm-760	14	4	were	be	AUX
ajlm-760	14	5	used	use	VERB
ajlm-760	14	6	in	in	ADP
ajlm-760	14	7	combination	combination	NOUN
ajlm-760	14	8	with	with	ADP
ajlm-760	14	9	genus	genus	NOUN
ajlm-760	14	10	and	and	CCONJ
ajlm-760	14	11	species	specie	NOUN
ajlm-760	14	12	names	name	NOUN
ajlm-760	14	13	of	of	ADP
ajlm-760	14	14	the	the	DET
ajlm-760	14	15	organisms	organism	NOUN
ajlm-760	14	16	listed	list	VERB
ajlm-760	14	17	above	above	ADV
ajlm-760	14	18	.	.	PUNCT
ajlm-760	15	1	all	all	DET
ajlm-760	15	2	results	result	NOUN
ajlm-760	15	3	were	be	AUX
ajlm-760	15	4	included	include	VERB
ajlm-760	15	5	in	in	ADP
ajlm-760	15	6	the	the	DET
ajlm-760	15	7	review	review	NOUN
ajlm-760	15	8	.	.	PUNCT
ajlm-760	16	1	results	result	NOUN
ajlm-760	16	2	:	:	PUNCT
ajlm-760	16	3	the	the	DET
ajlm-760	16	4	year	year	NOUN
ajlm-760	16	5	1991	1991	NUM
ajlm-760	16	6	saw	see	VERB
ajlm-760	16	7	one	one	NUM
ajlm-760	16	8	of	of	ADP
ajlm-760	16	9	the	the	DET
ajlm-760	16	10	first	first	ADJ
ajlm-760	16	11	reports	report	NOUN
ajlm-760	16	12	describing	describe	VERB
ajlm-760	16	13	the	the	DET
ajlm-760	16	14	use	use	NOUN
ajlm-760	16	15	of	of	ADP
ajlm-760	16	16	molecular	molecular	ADJ
ajlm-760	16	17	subtyping	subtyping	NOUN
ajlm-760	16	18	methodologies	methodology	NOUN
ajlm-760	16	19	in	in	ADP
ajlm-760	16	20	sub	sub	ADJ
ajlm-760	16	21	-	-	ADJ
ajlm-760	16	22	saharan	saharan	ADJ
ajlm-760	16	23	africa	africa	PROPN
ajlm-760	16	24	;	;	PUNCT
ajlm-760	16	25	this	this	PRON
ajlm-760	16	26	included	include	VERB
ajlm-760	16	27	the	the	DET
ajlm-760	16	28	use	use	NOUN
ajlm-760	16	29	of	of	ADP
ajlm-760	16	30	plasmid	plasmid	ADJ
ajlm-760	16	31	profiling	profiling	NOUN
ajlm-760	16	32	to	to	AUX
ajlm-760	16	33	characterise	characterise	VERB
ajlm-760	16	34	salmonella	salmonella	NOUN
ajlm-760	16	35	enteritidis	enteritidi	NOUN
ajlm-760	16	36	.	.	PUNCT
ajlm-760	17	1	to	to	ADP
ajlm-760	17	2	date	date	NOUN
ajlm-760	17	3	,	,	PUNCT
ajlm-760	17	4	several	several	ADJ
ajlm-760	17	5	methodologies	methodology	NOUN
ajlm-760	17	6	have	have	AUX
ajlm-760	17	7	been	be	AUX
ajlm-760	17	8	used	use	VERB
ajlm-760	17	9	;	;	PUNCT
ajlm-760	17	10	pulsed	pulse	VERB
ajlm-760	17	11	-	-	PUNCT
ajlm-760	17	12	field	field	NOUN
ajlm-760	17	13	gel	gel	NOUN
ajlm-760	17	14	electrophoresis	electrophoresis	NOUN
ajlm-760	17	15	analysis	analysis	NOUN
ajlm-760	17	16	and	and	CCONJ
ajlm-760	17	17	multilocus	multilocus	NOUN
ajlm-760	17	18	sequence	sequence	NOUN
ajlm-760	17	19	typing	typing	NOUN
ajlm-760	17	20	have	have	AUX
ajlm-760	17	21	been	be	AUX
ajlm-760	17	22	the	the	DET
ajlm-760	17	23	most	most	ADV
ajlm-760	17	24	commonly	commonly	ADV
ajlm-760	17	25	used	use	VERB
ajlm-760	17	26	methodologies	methodology	NOUN
ajlm-760	17	27	.	.	PUNCT
ajlm-760	18	1	investigations	investigation	NOUN
ajlm-760	18	2	have	have	AUX
ajlm-760	18	3	particularly	particularly	ADV
ajlm-760	18	4	highlighted	highlight	VERB
ajlm-760	18	5	the	the	DET
ajlm-760	18	6	emergence	emergence	NOUN
ajlm-760	18	7	and	and	CCONJ
ajlm-760	18	8	spread	spread	VERB
ajlm-760	18	9	of	of	ADP
ajlm-760	18	10	mdr	mdr	PROPN
ajlm-760	18	11	clones	clone	NOUN
ajlm-760	18	12	;	;	PUNCT
ajlm-760	18	13	these	these	PRON
ajlm-760	18	14	include	include	VERB
ajlm-760	18	15	salmonella	salmonella	NOUN
ajlm-760	18	16	typhi	typhi	NOUN
ajlm-760	18	17	h58	h58	PROPN
ajlm-760	18	18	and	and	CCONJ
ajlm-760	18	19	salmonella	salmonella	NOUN
ajlm-760	18	20	typhimurium	typhimurium	PRON
ajlm-760	18	21	st313	st313	PROPN
ajlm-760	18	22	clones	clone	NOUN
ajlm-760	18	23	.	.	PUNCT
ajlm-760	19	1	in	in	ADP
ajlm-760	19	2	recent	recent	ADJ
ajlm-760	19	3	times	time	NOUN
ajlm-760	19	4	,	,	PUNCT
ajlm-760	19	5	whole	whole	ADJ
ajlm-760	19	6	-	-	PUNCT
ajlm-760	19	7	genome	genome	NOUN
ajlm-760	19	8	sequencing	sequencing	NOUN
ajlm-760	19	9	(	(	PUNCT
ajlm-760	19	10	wgs	wgs	NOUN
ajlm-760	19	11	)	)	PUNCT
ajlm-760	19	12	analysis	analysis	NOUN
ajlm-760	19	13	approaches	approach	NOUN
ajlm-760	19	14	have	have	AUX
ajlm-760	19	15	increasingly	increasingly	ADV
ajlm-760	19	16	been	be	AUX
ajlm-760	19	17	used	use	VERB
ajlm-760	19	18	.	.	PUNCT
ajlm-760	20	1	conclusion	conclusion	NOUN
ajlm-760	20	2	:	:	PUNCT
ajlm-760	20	3	traditional	traditional	ADJ
ajlm-760	20	4	molecular	molecular	ADJ
ajlm-760	20	5	subtyping	subtyping	NOUN
ajlm-760	20	6	methodologies	methodology	NOUN
ajlm-760	20	7	are	be	AUX
ajlm-760	20	8	still	still	ADV
ajlm-760	20	9	commonly	commonly	ADV
ajlm-760	20	10	used	use	VERB
ajlm-760	20	11	and	and	CCONJ
ajlm-760	20	12	still	still	ADV
ajlm-760	20	13	have	have	VERB
ajlm-760	20	14	their	their	PRON
ajlm-760	20	15	place	place	NOUN
ajlm-760	20	16	in	in	ADP
ajlm-760	20	17	investigations	investigation	NOUN
ajlm-760	20	18	;	;	PUNCT
ajlm-760	20	19	however	however	ADV
ajlm-760	20	20	,	,	PUNCT
ajlm-760	20	21	wgs	wgs	NOUN
ajlm-760	20	22	approaches	approach	NOUN
ajlm-760	20	23	have	have	AUX
ajlm-760	20	24	increasingly	increasingly	ADV
ajlm-760	20	25	been	be	AUX
ajlm-760	20	26	used	use	VERB
ajlm-760	20	27	and	and	CCONJ
ajlm-760	20	28	are	be	AUX
ajlm-760	20	29	slowly	slowly	ADV
ajlm-760	20	30	gaining	gain	VERB
ajlm-760	20	31	a	a	DET
ajlm-760	20	32	stronghold	stronghold	NOUN
ajlm-760	20	33	.	.	PUNCT
ajlm-760	21	1	african	african	ADJ
ajlm-760	21	2	laboratories	laboratory	NOUN
ajlm-760	21	3	need	need	VERB
ajlm-760	21	4	to	to	PART
ajlm-760	21	5	start	start	VERB
ajlm-760	21	6	adapting	adapt	VERB
ajlm-760	21	7	their	their	PRON
ajlm-760	21	8	molecular	molecular	ADJ
ajlm-760	21	9	surveillance	surveillance	NOUN
ajlm-760	21	10	methodologies	methodology	NOUN
ajlm-760	21	11	to	to	PART
ajlm-760	21	12	include	include	VERB
ajlm-760	21	13	wgs	wgs	NOUN
ajlm-760	21	14	,	,	PUNCT
ajlm-760	21	15	as	as	SCONJ
ajlm-760	21	16	it	it	PRON
ajlm-760	21	17	is	be	AUX
ajlm-760	21	18	foreseen	foresee	VERB
ajlm-760	21	19	that	that	SCONJ
ajlm-760	21	20	wgs	wgs	NOUN
ajlm-760	21	21	analysis	analysis	NOUN
ajlm-760	21	22	will	will	AUX
ajlm-760	21	23	eventually	eventually	ADV
ajlm-760	21	24	replace	replace	VERB
ajlm-760	21	25	all	all	DET
ajlm-760	21	26	traditional	traditional	ADJ
ajlm-760	21	27	methodologies	methodology	NOUN
ajlm-760	21	28	.	.	PUNCT
ajlm-760	22	1	introduction	introduction	NOUN
ajlm-760	22	2	for	for	ADP
ajlm-760	22	3	molecular	molecular	ADJ
ajlm-760	22	4	epidemiological	epidemiological	ADJ
ajlm-760	22	5	investigation	investigation	NOUN
ajlm-760	22	6	of	of	ADP
ajlm-760	22	7	outbreaks	outbreak	NOUN
ajlm-760	22	8	in	in	ADP
ajlm-760	22	9	sub	sub	ADJ
ajlm-760	22	10	-	-	ADJ
ajlm-760	22	11	saharan	saharan	ADJ
ajlm-760	22	12	africa	africa	PROPN
ajlm-760	22	13	caused	cause	VERB
ajlm-760	22	14	by	by	ADP
ajlm-760	22	15	antimicrobial	antimicrobial	ADJ
ajlm-760	22	16	-	-	PUNCT
ajlm-760	22	17	resistant	resistant	ADJ
ajlm-760	22	18	(	(	PUNCT
ajlm-760	22	19	including	include	VERB
ajlm-760	22	20	multidrug	multidrug	NOUN
ajlm-760	22	21	-	-	PUNCT
ajlm-760	22	22	resistant	resistant	ADJ
ajlm-760	22	23	[	[	X
ajlm-760	22	24	mdr	mdr	NOUN
ajlm-760	22	25	]	]	X
ajlm-760	22	26	)	)	PUNCT
ajlm-760	22	27	enteric	enteric	ADJ
ajlm-760	22	28	bacterial	bacterial	ADJ
ajlm-760	22	29	pathogens	pathogen	NOUN
ajlm-760	22	30	,	,	PUNCT
ajlm-760	22	31	most	most	ADV
ajlm-760	22	32	published	publish	VERB
ajlm-760	22	33	data	datum	NOUN
ajlm-760	22	34	describe	describe	VERB
ajlm-760	22	35	pathogens	pathogen	NOUN
ajlm-760	22	36	belonging	belong	VERB
ajlm-760	22	37	to	to	ADP
ajlm-760	22	38	the	the	DET
ajlm-760	22	39	genus	genus	NOUN
ajlm-760	22	40	or	or	CCONJ
ajlm-760	22	41	species	specie	NOUN
ajlm-760	22	42	of	of	ADP
ajlm-760	22	43	salmonella	salmonella	NOUN
ajlm-760	22	44	,	,	PUNCT
ajlm-760	22	45	vibrio	vibrio	ADJ
ajlm-760	22	46	cholerae	cholerae	PROPN
ajlm-760	22	47	,	,	PUNCT
ajlm-760	22	48	shigella	shigella	PROPN
ajlm-760	22	49	and	and	CCONJ
ajlm-760	22	50	escherichia	escherichia	NOUN
ajlm-760	22	51	coli	coli	NOUN
ajlm-760	22	52	.	.	PUNCT
ajlm-760	23	1	by	by	ADP
ajlm-760	23	2	‘	'	PUNCT
ajlm-760	23	3	molecular	molecular	ADJ
ajlm-760	23	4	epidemiological	epidemiological	ADJ
ajlm-760	23	5	investigation	investigation	NOUN
ajlm-760	23	6	’	'	PUNCT
ajlm-760	23	7	,	,	PUNCT
ajlm-760	23	8	i	i	PRON
ajlm-760	23	9	refer	refer	VERB
ajlm-760	23	10	to	to	ADP
ajlm-760	23	11	the	the	DET
ajlm-760	23	12	use	use	NOUN
ajlm-760	23	13	of	of	ADP
ajlm-760	23	14	molecular	molecular	ADJ
ajlm-760	23	15	subtyping	subtype	VERB
ajlm-760	23	16	techniques	technique	NOUN
ajlm-760	23	17	that	that	PRON
ajlm-760	23	18	analyse	analyse	VERB
ajlm-760	23	19	bacterial	bacterial	ADJ
ajlm-760	23	20	strains	strain	NOUN
ajlm-760	23	21	at	at	ADP
ajlm-760	23	22	the	the	DET
ajlm-760	23	23	level	level	NOUN
ajlm-760	23	24	of	of	ADP
ajlm-760	23	25	their	their	PRON
ajlm-760	23	26	nucleic	nucleic	ADJ
ajlm-760	23	27	acid	acid	NOUN
ajlm-760	23	28	and	and	CCONJ
ajlm-760	23	29	so	so	ADV
ajlm-760	23	30	gives	give	VERB
ajlm-760	23	31	an	an	DET
ajlm-760	23	32	indication	indication	NOUN
ajlm-760	23	33	of	of	ADP
ajlm-760	23	34	genetic	genetic	ADJ
ajlm-760	23	35	similarity	similarity	NOUN
ajlm-760	23	36	of	of	ADP
ajlm-760	23	37	strains.1	strains.1	NOUN
ajlm-760	23	38	molecular	molecular	ADJ
ajlm-760	23	39	subtyping	subtype	VERB
ajlm-760	23	40	is	be	AUX
ajlm-760	23	41	vital	vital	ADJ
ajlm-760	23	42	for	for	ADP
ajlm-760	23	43	accurate	accurate	ADJ
ajlm-760	23	44	epidemiological	epidemiological	ADJ
ajlm-760	23	45	investigations	investigation	NOUN
ajlm-760	23	46	of	of	ADP
ajlm-760	23	47	bacterial	bacterial	ADJ
ajlm-760	23	48	infections.2	infections.2	PROPN
ajlm-760	23	49	molecular	molecular	ADJ
ajlm-760	23	50	subtyping	subtyping	NOUN
ajlm-760	23	51	allows	allow	VERB
ajlm-760	23	52	one	one	NOUN
ajlm-760	23	53	to	to	PART
ajlm-760	23	54	segregate	segregate	VERB
ajlm-760	23	55	unlike	unlike	ADP
ajlm-760	23	56	strains	strain	NOUN
ajlm-760	23	57	of	of	ADP
ajlm-760	23	58	the	the	DET
ajlm-760	23	59	same	same	ADJ
ajlm-760	23	60	species	specie	NOUN
ajlm-760	23	61	or	or	CCONJ
ajlm-760	23	62	serotype	serotype	NOUN
ajlm-760	23	63	of	of	ADP
ajlm-760	23	64	bacteria	bacteria	NOUN
ajlm-760	23	65	and	and	CCONJ
ajlm-760	23	66	identify	identify	VERB
ajlm-760	23	67	clones	clone	NOUN
ajlm-760	23	68	or	or	CCONJ
ajlm-760	23	69	clusters	cluster	NOUN
ajlm-760	23	70	of	of	ADP
ajlm-760	23	71	bacteria	bacteria	NOUN
ajlm-760	23	72	(	(	PUNCT
ajlm-760	23	73	genetically	genetically	ADV
ajlm-760	23	74	related	relate	VERB
ajlm-760	23	75	strains	strain	NOUN
ajlm-760	23	76	)	)	PUNCT
ajlm-760	23	77	.	.	PUNCT
ajlm-760	24	1	molecular	molecular	ADJ
ajlm-760	24	2	subtyping	subtyping	NOUN
ajlm-760	24	3	allows	allow	VERB
ajlm-760	24	4	one	one	PRON
ajlm-760	24	5	to	to	PART
ajlm-760	24	6	track	track	VERB
ajlm-760	24	7	the	the	DET
ajlm-760	24	8	spread	spread	NOUN
ajlm-760	24	9	of	of	ADP
ajlm-760	24	10	strains	strain	NOUN
ajlm-760	24	11	or	or	CCONJ
ajlm-760	24	12	clones	clone	NOUN
ajlm-760	24	13	and	and	CCONJ
ajlm-760	24	14	determine	determine	VERB
ajlm-760	24	15	how	how	SCONJ
ajlm-760	24	16	local	local	ADJ
ajlm-760	24	17	strains	strain	NOUN
ajlm-760	24	18	compare	compare	VERB
ajlm-760	24	19	to	to	ADP
ajlm-760	24	20	those	those	PRON
ajlm-760	24	21	circulating	circulate	VERB
ajlm-760	24	22	worldwide.3	worldwide.3	ADP
ajlm-760	24	23	molecular	molecular	ADJ
ajlm-760	24	24	subtyping	subtype	VERB
ajlm-760	24	25	data	datum	NOUN
ajlm-760	24	26	is	be	AUX
ajlm-760	24	27	critical	critical	ADJ
ajlm-760	24	28	for	for	ADP
ajlm-760	24	29	successful	successful	ADJ
ajlm-760	24	30	epidemiological	epidemiological	ADJ
ajlm-760	24	31	investigation	investigation	NOUN
ajlm-760	24	32	of	of	ADP
ajlm-760	24	33	outbreaks	outbreak	NOUN
ajlm-760	24	34	of	of	ADP
ajlm-760	24	35	disease	disease	NOUN
ajlm-760	24	36	;	;	PUNCT
ajlm-760	24	37	in	in	ADP
ajlm-760	24	38	particular	particular	ADJ
ajlm-760	24	39	,	,	PUNCT
ajlm-760	24	40	outbreak	outbreak	NOUN
ajlm-760	24	41	-	-	PUNCT
ajlm-760	24	42	related	relate	VERB
ajlm-760	24	43	cases	case	NOUN
ajlm-760	24	44	of	of	ADP
ajlm-760	24	45	disease	disease	NOUN
ajlm-760	24	46	can	can	AUX
ajlm-760	24	47	be	be	AUX
ajlm-760	24	48	differentiated	differentiate	VERB
ajlm-760	24	49	from	from	ADP
ajlm-760	24	50	sporadic	sporadic	ADJ
ajlm-760	24	51	cases	case	NOUN
ajlm-760	24	52	of	of	ADP
ajlm-760	24	53	disease.4	disease.4	ADJ
ajlm-760	24	54	knowledge	knowledge	NOUN
ajlm-760	24	55	of	of	ADP
ajlm-760	24	56	the	the	DET
ajlm-760	24	57	molecular	molecular	ADJ
ajlm-760	24	58	epidemiology	epidemiology	NOUN
ajlm-760	24	59	of	of	ADP
ajlm-760	24	60	bacterial	bacterial	ADJ
ajlm-760	24	61	infections	infection	NOUN
ajlm-760	24	62	provides	provide	VERB
ajlm-760	24	63	information	information	NOUN
ajlm-760	24	64	of	of	ADP
ajlm-760	24	65	major	major	ADJ
ajlm-760	24	66	circulating	circulate	VERB
ajlm-760	24	67	(	(	PUNCT
ajlm-760	24	68	infecting	infect	VERB
ajlm-760	24	69	)	)	PUNCT
ajlm-760	24	70	clones	clone	NOUN
ajlm-760	24	71	,	,	PUNCT
ajlm-760	24	72	so	so	SCONJ
ajlm-760	24	73	that	that	SCONJ
ajlm-760	24	74	in	in	ADP
ajlm-760	24	75	times	time	NOUN
ajlm-760	24	76	of	of	ADP
ajlm-760	24	77	antimicrobial	antimicrobial	ADJ
ajlm-760	24	78	treatment	treatment	NOUN
ajlm-760	24	79	and	and	CCONJ
ajlm-760	24	80	vaccine	vaccine	NOUN
ajlm-760	24	81	interventions	intervention	NOUN
ajlm-760	24	82	,	,	PUNCT
ajlm-760	24	83	well	well	ADV
ajlm-760	24	84	-	-	PUNCT
ajlm-760	24	85	informed	inform	VERB
ajlm-760	24	86	and	and	CCONJ
ajlm-760	24	87	educated	educate	VERB
ajlm-760	24	88	decisions	decision	NOUN
ajlm-760	24	89	can	can	AUX
ajlm-760	24	90	be	be	AUX
ajlm-760	24	91	made	make	VERB
ajlm-760	24	92	to	to	PART
ajlm-760	24	93	combat	combat	VERB
ajlm-760	24	94	the	the	DET
ajlm-760	24	95	disease.5	disease.5	NOUN
ajlm-760	24	96	the	the	DET
ajlm-760	24	97	mid-1990s	mid-1990	NOUN
ajlm-760	24	98	saw	see	VERB
ajlm-760	24	99	the	the	DET
ajlm-760	24	100	start	start	NOUN
ajlm-760	24	101	of	of	ADP
ajlm-760	24	102	noteworthy	noteworthy	ADJ
ajlm-760	24	103	publications	publication	NOUN
ajlm-760	24	104	describing	describe	VERB
ajlm-760	24	105	the	the	DET
ajlm-760	24	106	use	use	NOUN
ajlm-760	24	107	of	of	ADP
ajlm-760	24	108	molecular	molecular	ADJ
ajlm-760	24	109	subtyping	subtype	VERB
ajlm-760	24	110	techniques	technique	NOUN
ajlm-760	24	111	to	to	PART
ajlm-760	24	112	investigate	investigate	VERB
ajlm-760	24	113	the	the	DET
ajlm-760	24	114	molecular	molecular	ADJ
ajlm-760	24	115	epidemiology	epidemiology	NOUN
ajlm-760	24	116	of	of	ADP
ajlm-760	24	117	antimicrobial	antimicrobial	ADJ
ajlm-760	24	118	-	-	PUNCT
ajlm-760	24	119	resistant	resistant	ADJ
ajlm-760	24	120	enteric	enteric	ADJ
ajlm-760	24	121	bacterial	bacterial	ADJ
ajlm-760	24	122	pathogens	pathogen	NOUN
ajlm-760	24	123	in	in	ADP
ajlm-760	24	124	sub	sub	ADJ
ajlm-760	24	125	-	-	ADJ
ajlm-760	24	126	saharan	saharan	ADJ
ajlm-760	24	127	africa.6	africa.6	VERB
ajlm-760	24	128	these	these	DET
ajlm-760	24	129	molecular	molecular	ADJ
ajlm-760	24	130	subtyping	subtype	VERB
ajlm-760	24	131	techniques	technique	NOUN
ajlm-760	24	132	included	include	VERB
ajlm-760	24	133	plasmid	plasmid	ADJ
ajlm-760	24	134	profiling	profiling	NOUN
ajlm-760	24	135	,	,	PUNCT
ajlm-760	24	136	ribotyping	ribotype	VERB
ajlm-760	24	137	(	(	PUNCT
ajlm-760	24	138	southern	southern	ADJ
ajlm-760	24	139	blotting	blotting	NOUN
ajlm-760	24	140	of	of	ADP
ajlm-760	24	141	restricted	restricted	ADJ
ajlm-760	24	142	genomic	genomic	ADJ
ajlm-760	24	143	dna	dna	NOUN
ajlm-760	24	144	and	and	CCONJ
ajlm-760	24	145	probing	probe	VERB
ajlm-760	24	146	with	with	ADP
ajlm-760	24	147	ribosomal	ribosomal	NOUN
ajlm-760	24	148	genes	gene	NOUN
ajlm-760	24	149	)	)	PUNCT
ajlm-760	24	150	,	,	PUNCT
ajlm-760	24	151	random	random	ADJ
ajlm-760	24	152	amplified	amplify	VERB
ajlm-760	24	153	polymorphic	polymorphic	ADJ
ajlm-760	24	154	dna	dna	NOUN
ajlm-760	24	155	analysis	analysis	NOUN
ajlm-760	24	156	(	(	PUNCT
ajlm-760	24	157	also	also	ADV
ajlm-760	24	158	called	call	VERB
ajlm-760	24	159	arbitrarily	arbitrarily	ADV
ajlm-760	24	160	primed	prime	VERB
ajlm-760	24	161	polymerase	polymerase	NOUN
ajlm-760	24	162	chain	chain	NOUN
ajlm-760	24	163	reaction	reaction	NOUN
ajlm-760	24	164	[	[	X
ajlm-760	24	165	pcr	pcr	NOUN
ajlm-760	24	166	]	]	PUNCT
ajlm-760	24	167	)	)	PUNCT
ajlm-760	24	168	,	,	PUNCT
ajlm-760	24	169	enterobacterial	enterobacterial	ADJ
ajlm-760	24	170	repetitive	repetitive	ADJ
ajlm-760	24	171	intergenic	intergenic	ADJ
ajlm-760	24	172	consensus	consensus	NOUN
ajlm-760	24	173	elements	element	NOUN
ajlm-760	24	174	pcr	pcr	ADJ
ajlm-760	24	175	,	,	PUNCT
ajlm-760	24	176	pulsed	pulse	VERB
ajlm-760	24	177	-	-	PUNCT
ajlm-760	24	178	field	field	NOUN
ajlm-760	24	179	gel	gel	NOUN
ajlm-760	24	180	electrophoresis	electrophoresis	NOUN
ajlm-760	24	181	(	(	PUNCT
ajlm-760	24	182	pfge	pfge	NOUN
ajlm-760	24	183	)	)	PUNCT
ajlm-760	24	184	analysis	analysis	NOUN
ajlm-760	24	185	,	,	PUNCT
ajlm-760	24	186	multiple	multiple	ADJ
ajlm-760	24	187	-	-	PUNCT
ajlm-760	24	188	locus	locus	ADJ
ajlm-760	24	189	variable	variable	ADJ
ajlm-760	24	190	-	-	PUNCT
ajlm-760	24	191	number	number	NOUN
ajlm-760	24	192	tandem	tandem	NOUN
ajlm-760	24	193	-	-	PUNCT
ajlm-760	24	194	repeats	repeat	VERB
ajlm-760	24	195	analysis	analysis	NOUN
ajlm-760	24	196	(	(	PUNCT
ajlm-760	24	197	mlva	mlva	NOUN
ajlm-760	24	198	)	)	PUNCT
ajlm-760	24	199	,	,	PUNCT
ajlm-760	24	200	multilocus	multilocus	NOUN
ajlm-760	24	201	sequence	sequence	NOUN
ajlm-760	24	202	typing	typing	NOUN
ajlm-760	24	203	(	(	PUNCT
ajlm-760	24	204	mlst	mlst	NOUN
ajlm-760	24	205	)	)	PUNCT
ajlm-760	24	206	,	,	PUNCT
ajlm-760	24	207	multilocus	multilocus	NOUN
ajlm-760	24	208	sequence	sequence	NOUN
ajlm-760	24	209	analysis	analysis	NOUN
ajlm-760	24	210	and	and	CCONJ
ajlm-760	24	211	whole	whole	ADJ
ajlm-760	24	212	-	-	PUNCT
ajlm-760	24	213	genome	genome	NOUN
ajlm-760	24	214	sequencing	sequencing	NOUN
ajlm-760	24	215	(	(	PUNCT
ajlm-760	24	216	wgs	wgs	NOUN
ajlm-760	24	217	)	)	PUNCT
ajlm-760	24	218	analysis	analysis	NOUN
ajlm-760	24	219	.	.	PUNCT
ajlm-760	25	1	molecular	molecular	ADJ
ajlm-760	25	2	subtyping	subtype	VERB
ajlm-760	25	3	data	datum	NOUN
ajlm-760	25	4	from	from	ADP
ajlm-760	25	5	sub	sub	ADJ
ajlm-760	25	6	-	-	ADJ
ajlm-760	25	7	saharan	saharan	ADJ
ajlm-760	25	8	africa	africa	PROPN
ajlm-760	25	9	is	be	AUX
ajlm-760	25	10	summarised	summarise	VERB
ajlm-760	25	11	in	in	ADP
ajlm-760	25	12	table	table	NOUN
ajlm-760	25	13	1	1	NUM
ajlm-760	25	14	and	and	CCONJ
ajlm-760	25	15	the	the	DET
ajlm-760	25	16	countries	country	NOUN
ajlm-760	25	17	involved	involve	VERB
ajlm-760	25	18	are	be	AUX
ajlm-760	25	19	highlighted	highlight	VERB
ajlm-760	25	20	in	in	ADP
ajlm-760	25	21	figure	figure	NOUN
ajlm-760	25	22	1	1	NUM
ajlm-760	25	23	.	.	PUNCT
ajlm-760	25	24	to	to	ADP
ajlm-760	25	25	date	date	NOUN
ajlm-760	25	26	,	,	PUNCT
ajlm-760	25	27	the	the	DET
ajlm-760	25	28	most	most	ADV
ajlm-760	25	29	popular	popular	ADJ
ajlm-760	25	30	and	and	CCONJ
ajlm-760	25	31	well	well	ADV
ajlm-760	25	32	documented	document	VERB
ajlm-760	25	33	molecular	molecular	ADJ
ajlm-760	25	34	subtyping	subtyping	NOUN
ajlm-760	25	35	techniques	technique	NOUN
ajlm-760	25	36	have	have	AUX
ajlm-760	25	37	included	include	VERB
ajlm-760	25	38	pfge	pfge	NOUN
ajlm-760	25	39	,	,	PUNCT
ajlm-760	25	40	mlva	mlva	PROPN
ajlm-760	25	41	,	,	PUNCT
ajlm-760	25	42	mlst	mlst	NOUN
ajlm-760	25	43	and	and	CCONJ
ajlm-760	25	44	wgs	wgs	NOUN
ajlm-760	25	45	analysis	analysis	NOUN
ajlm-760	25	46	.	.	PUNCT
ajlm-760	26	1	traditional	traditional	ADJ
ajlm-760	26	2	molecular	molecular	ADJ
ajlm-760	26	3	subtyping	subtyping	NOUN
ajlm-760	26	4	methodologies	methodology	NOUN
ajlm-760	26	5	,	,	PUNCT
ajlm-760	26	6	such	such	ADJ
ajlm-760	26	7	as	as	ADP
ajlm-760	26	8	pfge	pfge	NOUN
ajlm-760	26	9	,	,	PUNCT
ajlm-760	26	10	mlva	mlva	NOUN
ajlm-760	26	11	and	and	CCONJ
ajlm-760	26	12	mlst	mlst	NOUN
ajlm-760	26	13	,	,	PUNCT
ajlm-760	26	14	have	have	VERB
ajlm-760	26	15	their	their	PRON
ajlm-760	26	16	advantages	advantage	NOUN
ajlm-760	26	17	and	and	CCONJ
ajlm-760	26	18	disadvantages	disadvantage	NOUN
ajlm-760	26	19	;	;	PUNCT
ajlm-760	26	20	these	these	PRON
ajlm-760	26	21	have	have	AUX
ajlm-760	26	22	been	be	AUX
ajlm-760	26	23	well	well	ADV
ajlm-760	26	24	reviewed	review	VERB
ajlm-760	26	25	elsewhere	elsewhere	ADV
ajlm-760	26	26	on	on	ADP
ajlm-760	26	27	numerous	numerous	ADJ
ajlm-760	26	28	occasions.1,2,7,8,9,10,11	occasions.1,2,7,8,9,10,11	NOUN
ajlm-760	26	29	some	some	DET
ajlm-760	26	30	molecular	molecular	ADJ
ajlm-760	26	31	subtyping	subtype	VERB
ajlm-760	26	32	techniques	technique	NOUN
ajlm-760	26	33	(	(	PUNCT
ajlm-760	26	34	such	such	ADJ
ajlm-760	26	35	as	as	ADP
ajlm-760	26	36	ribotyping	ribotype	VERB
ajlm-760	26	37	,	,	PUNCT
ajlm-760	26	38	random	random	ADJ
ajlm-760	26	39	amplified	amplify	VERB
ajlm-760	26	40	polymorphic	polymorphic	ADJ
ajlm-760	26	41	dna	dna	NOUN
ajlm-760	26	42	analysis	analysis	NOUN
ajlm-760	26	43	and	and	CCONJ
ajlm-760	26	44	enterobacterial	enterobacterial	ADJ
ajlm-760	26	45	repetitive	repetitive	ADJ
ajlm-760	26	46	intergenic	intergenic	ADJ
ajlm-760	26	47	consensus	consensus	NOUN
ajlm-760	26	48	elements	element	NOUN
ajlm-760	26	49	pcr	pcr	PROPN
ajlm-760	26	50	)	)	PUNCT
ajlm-760	26	51	may	may	AUX
ajlm-760	26	52	only	only	ADV
ajlm-760	26	53	allow	allow	VERB
ajlm-760	26	54	a	a	DET
ajlm-760	26	55	local	local	ADJ
ajlm-760	26	56	comparison	comparison	NOUN
ajlm-760	26	57	of	of	ADP
ajlm-760	26	58	bacterial	bacterial	ADJ
ajlm-760	26	59	strains	strain	NOUN
ajlm-760	26	60	within	within	ADP
ajlm-760	26	61	a	a	DET
ajlm-760	26	62	single	single	ADJ
ajlm-760	26	63	laboratory	laboratory	NOUN
ajlm-760	26	64	,	,	PUNCT
ajlm-760	26	65	because	because	SCONJ
ajlm-760	26	66	the	the	DET
ajlm-760	26	67	workings	working	NOUN
ajlm-760	26	68	of	of	ADP
ajlm-760	26	69	the	the	DET
ajlm-760	26	70	methodology	methodology	NOUN
ajlm-760	26	71	are	be	AUX
ajlm-760	26	72	difficult	difficult	ADJ
ajlm-760	26	73	to	to	PART
ajlm-760	26	74	standardise	standardise	VERB
ajlm-760	26	75	between	between	ADP
ajlm-760	26	76	laboratories	laboratory	NOUN
ajlm-760	26	77	,	,	PUNCT
ajlm-760	26	78	and	and	CCONJ
ajlm-760	26	79	so	so	ADV
ajlm-760	26	80	the	the	DET
ajlm-760	26	81	data	datum	NOUN
ajlm-760	26	82	that	that	PRON
ajlm-760	26	83	is	be	AUX
ajlm-760	26	84	produced	produce	VERB
ajlm-760	26	85	can	can	AUX
ajlm-760	26	86	not	not	PART
ajlm-760	26	87	be	be	AUX
ajlm-760	26	88	truly	truly	ADV
ajlm-760	26	89	and	and	CCONJ
ajlm-760	26	90	accurately	accurately	ADV
ajlm-760	26	91	compared	compare	VERB
ajlm-760	26	92	between	between	ADP
ajlm-760	26	93	laboratories	laboratory	NOUN
ajlm-760	26	94	.	.	PUNCT
ajlm-760	27	1	in	in	ADP
ajlm-760	27	2	contrast	contrast	NOUN
ajlm-760	27	3	,	,	PUNCT
ajlm-760	27	4	a	a	DET
ajlm-760	27	5	technique	technique	NOUN
ajlm-760	27	6	such	such	ADJ
ajlm-760	27	7	as	as	ADP
ajlm-760	27	8	pfge	pfge	NOUN
ajlm-760	27	9	analysis	analysis	NOUN
ajlm-760	27	10	,	,	PUNCT
ajlm-760	27	11	has	have	AUX
ajlm-760	27	12	been	be	AUX
ajlm-760	27	13	standardised	standardise	VERB
ajlm-760	27	14	by	by	ADP
ajlm-760	27	15	pulsenet	pulsenet	NOUN
ajlm-760	27	16	international	international	ADJ
ajlm-760	27	17	(	(	PUNCT
ajlm-760	27	18	http://www.pulsenetinternational.org/	http://www.pulsenetinternational.org/	ADJ
ajlm-760	27	19	)	)	PUNCT
ajlm-760	27	20	and	and	CCONJ
ajlm-760	27	21	is	be	AUX
ajlm-760	27	22	successfully	successfully	ADV
ajlm-760	27	23	used	use	VERB
ajlm-760	27	24	for	for	ADP
ajlm-760	27	25	inter	inter	ADJ
ajlm-760	27	26	-	-	ADJ
ajlm-760	27	27	laboratory	laboratory	ADJ
ajlm-760	27	28	comparison	comparison	NOUN
ajlm-760	27	29	of	of	ADP
ajlm-760	27	30	subtyping	subtype	VERB
ajlm-760	27	31	data	datum	NOUN
ajlm-760	27	32	and	and	CCONJ
ajlm-760	27	33	global	global	ADJ
ajlm-760	27	34	comparison	comparison	NOUN
ajlm-760	27	35	of	of	ADP
ajlm-760	27	36	bacterial	bacterial	ADJ
ajlm-760	27	37	strains.4	strains.4	PROPN
ajlm-760	27	38	figure	figure	NOUN
ajlm-760	27	39	1	1	NUM
ajlm-760	27	40	:	:	PUNCT
ajlm-760	27	41	map	map	NOUN
ajlm-760	27	42	of	of	ADP
ajlm-760	27	43	africa	africa	PROPN
ajlm-760	27	44	highlighting	highlighting	PROPN
ajlm-760	27	45	(	(	PUNCT
ajlm-760	27	46	with	with	ADP
ajlm-760	27	47	shading	shading	NOUN
ajlm-760	27	48	)	)	PUNCT
ajlm-760	27	49	countries	country	NOUN
ajlm-760	27	50	where	where	SCONJ
ajlm-760	27	51	antimicrobial	antimicrobial	ADJ
ajlm-760	27	52	-	-	PUNCT
ajlm-760	27	53	resistant	resistant	ADJ
ajlm-760	27	54	enteric	enteric	ADJ
ajlm-760	27	55	bacterial	bacterial	ADJ
ajlm-760	27	56	pathogens	pathogen	NOUN
ajlm-760	27	57	have	have	AUX
ajlm-760	27	58	been	be	AUX
ajlm-760	27	59	isolated	isolate	VERB
ajlm-760	27	60	and	and	CCONJ
ajlm-760	27	61	further	far	ADV
ajlm-760	27	62	investigated	investigate	VERB
ajlm-760	27	63	using	use	VERB
ajlm-760	27	64	molecular	molecular	ADJ
ajlm-760	27	65	subtyping	subtype	VERB
ajlm-760	27	66	methodologies	methodology	NOUN
ajlm-760	27	67	.	.	PUNCT
ajlm-760	28	1	table	table	NOUN
ajlm-760	28	2	1	1	NUM
ajlm-760	28	3	:	:	PUNCT
ajlm-760	28	4	 	 	SPACE
ajlm-760	28	5	summary	summary	NOUN
ajlm-760	28	6	of	of	ADP
ajlm-760	28	7	data	datum	NOUN
ajlm-760	28	8	from	from	ADP
ajlm-760	28	9	publications	publication	NOUN
ajlm-760	28	10	that	that	PRON
ajlm-760	28	11	have	have	AUX
ajlm-760	28	12	described	describe	VERB
ajlm-760	28	13	the	the	DET
ajlm-760	28	14	use	use	NOUN
ajlm-760	28	15	of	of	ADP
ajlm-760	28	16	molecular	molecular	ADJ
ajlm-760	28	17	subtyping	subtyping	NOUN
ajlm-760	28	18	methodologies	methodology	NOUN
ajlm-760	28	19	to	to	PART
ajlm-760	28	20	investigate	investigate	VERB
ajlm-760	28	21	antimicrobial	antimicrobial	ADJ
ajlm-760	28	22	-	-	PUNCT
ajlm-760	28	23	resistant	resistant	ADJ
ajlm-760	28	24	enteric	enteric	ADJ
ajlm-760	28	25	bacterial	bacterial	ADJ
ajlm-760	28	26	pathogens	pathogen	NOUN
ajlm-760	28	27	isolated	isolate	VERB
ajlm-760	28	28	in	in	ADP
ajlm-760	28	29	sub	sub	ADJ
ajlm-760	28	30	-	-	ADJ
ajlm-760	28	31	saharan	saharan	ADJ
ajlm-760	28	32	africa	africa	PROPN
ajlm-760	28	33	.	.	PUNCT
ajlm-760	29	1	newer	new	ADJ
ajlm-760	29	2	approaches	approach	NOUN
ajlm-760	29	3	to	to	ADP
ajlm-760	29	4	molecular	molecular	ADJ
ajlm-760	29	5	subtyping	subtyping	NOUN
ajlm-760	29	6	involve	involve	VERB
ajlm-760	29	7	wgs	wgs	NOUN
ajlm-760	29	8	analysis.12,13,14	analysis.12,13,14	ADP
ajlm-760	29	9	analysis	analysis	NOUN
ajlm-760	29	10	of	of	ADP
ajlm-760	29	11	wgs	wgs	NOUN
ajlm-760	29	12	data	datum	NOUN
ajlm-760	29	13	for	for	ADP
ajlm-760	29	14	molecular	molecular	ADJ
ajlm-760	29	15	epidemiological	epidemiological	ADJ
ajlm-760	29	16	purposes	purpose	NOUN
ajlm-760	29	17	can	can	AUX
ajlm-760	29	18	include	include	VERB
ajlm-760	29	19	multiple	multiple	ADJ
ajlm-760	29	20	approaches	approach	NOUN
ajlm-760	29	21	;	;	PUNCT
ajlm-760	29	22	however	however	ADV
ajlm-760	29	23	,	,	PUNCT
ajlm-760	29	24	the	the	DET
ajlm-760	29	25	more	more	ADV
ajlm-760	29	26	popular	popular	ADJ
ajlm-760	29	27	methods	method	NOUN
ajlm-760	29	28	are	be	AUX
ajlm-760	29	29	whole	whole	ADJ
ajlm-760	29	30	-	-	PUNCT
ajlm-760	29	31	genome	genome	NOUN
ajlm-760	29	32	mlst	mlst	NOUN
ajlm-760	29	33	and	and	CCONJ
ajlm-760	29	34	single	single	ADJ
ajlm-760	29	35	nucleotide	nucleotide	ADJ
ajlm-760	29	36	polymorphisms	polymorphism	NOUN
ajlm-760	29	37	(	(	PUNCT
ajlm-760	29	38	snp	snp	ADJ
ajlm-760	29	39	)	)	PUNCT
ajlm-760	29	40	analysis.15	analysis.15	PROPN
ajlm-760	29	41	wgs	wgs	NOUN
ajlm-760	29	42	data	datum	NOUN
ajlm-760	29	43	is	be	AUX
ajlm-760	29	44	electronically	electronically	ADV
ajlm-760	29	45	portable	portable	ADJ
ajlm-760	29	46	and	and	CCONJ
ajlm-760	29	47	can	can	AUX
ajlm-760	29	48	easily	easily	ADV
ajlm-760	29	49	be	be	AUX
ajlm-760	29	50	shared	share	VERB
ajlm-760	29	51	between	between	ADP
ajlm-760	29	52	laboratories	laboratory	NOUN
ajlm-760	29	53	,	,	PUNCT
ajlm-760	29	54	allowing	allow	VERB
ajlm-760	29	55	for	for	ADP
ajlm-760	29	56	a	a	DET
ajlm-760	29	57	global	global	ADJ
ajlm-760	29	58	inter	inter	ADJ
ajlm-760	29	59	-	-	ADJ
ajlm-760	29	60	laboratory	laboratory	ADJ
ajlm-760	29	61	comparison	comparison	NOUN
ajlm-760	29	62	of	of	ADP
ajlm-760	29	63	bacterial	bacterial	ADJ
ajlm-760	29	64	strains	strain	NOUN
ajlm-760	29	65	.	.	PUNCT
ajlm-760	30	1	current	current	ADJ
ajlm-760	30	2	challenges	challenge	NOUN
ajlm-760	30	3	surrounding	surround	VERB
ajlm-760	30	4	wgs	wgs	NOUN
ajlm-760	30	5	include	include	VERB
ajlm-760	30	6	how	how	SCONJ
ajlm-760	30	7	to	to	PART
ajlm-760	30	8	standardise	standardise	VERB
ajlm-760	30	9	the	the	DET
ajlm-760	30	10	quality	quality	NOUN
ajlm-760	30	11	of	of	ADP
ajlm-760	30	12	wgs	wgs	NOUN
ajlm-760	30	13	data	datum	NOUN
ajlm-760	30	14	generated	generate	VERB
ajlm-760	30	15	and	and	CCONJ
ajlm-760	30	16	how	how	SCONJ
ajlm-760	30	17	to	to	PART
ajlm-760	30	18	standardise	standardise	VERB
ajlm-760	30	19	the	the	DET
ajlm-760	30	20	analysis	analysis	NOUN
ajlm-760	30	21	of	of	ADP
ajlm-760	30	22	wgs	wgs	NOUN
ajlm-760	30	23	data	datum	NOUN
ajlm-760	30	24	,	,	PUNCT
ajlm-760	30	25	in	in	ADP
ajlm-760	30	26	order	order	NOUN
ajlm-760	30	27	to	to	PART
ajlm-760	30	28	allow	allow	VERB
ajlm-760	30	29	for	for	ADP
ajlm-760	30	30	a	a	DET
ajlm-760	30	31	successful	successful	ADJ
ajlm-760	30	32	inter	inter	ADJ
ajlm-760	30	33	-	-	ADJ
ajlm-760	30	34	laboratory	laboratory	ADJ
ajlm-760	30	35	comparison	comparison	NOUN
ajlm-760	30	36	of	of	ADP
ajlm-760	30	37	analysed	analyse	VERB
ajlm-760	30	38	wgs	wgs	NOUN
ajlm-760	30	39	data	datum	NOUN
ajlm-760	30	40	.	.	PUNCT
ajlm-760	31	1	pulsenet	pulsenet	PROPN
ajlm-760	31	2	international	international	PROPN
ajlm-760	31	3	has	have	AUX
ajlm-760	31	4	taken	take	VERB
ajlm-760	31	5	on	on	ADP
ajlm-760	31	6	this	this	DET
ajlm-760	31	7	challenge	challenge	NOUN
ajlm-760	31	8	and	and	CCONJ
ajlm-760	31	9	published	publish	VERB
ajlm-760	31	10	their	their	PRON
ajlm-760	31	11	vision	vision	NOUN
ajlm-760	31	12	for	for	ADP
ajlm-760	31	13	implementation	implementation	NOUN
ajlm-760	31	14	of	of	ADP
ajlm-760	31	15	wgs	wgs	NOUN
ajlm-760	31	16	for	for	ADP
ajlm-760	31	17	global	global	ADJ
ajlm-760	31	18	foodborne	foodborne	ADJ
ajlm-760	31	19	disease	disease	NOUN
ajlm-760	31	20	surveillance	surveillance	NOUN
ajlm-760	31	21	and	and	CCONJ
ajlm-760	31	22	global	global	ADJ
ajlm-760	31	23	analysis	analysis	NOUN
ajlm-760	31	24	of	of	ADP
ajlm-760	31	25	enteric	enteric	NOUN
ajlm-760	31	26	pathogens.15	pathogens.15	NOUN
ajlm-760	31	27	the	the	DET
ajlm-760	31	28	aim	aim	NOUN
ajlm-760	31	29	of	of	ADP
ajlm-760	31	30	the	the	DET
ajlm-760	31	31	present	present	ADJ
ajlm-760	31	32	manuscript	manuscript	NOUN
ajlm-760	31	33	is	be	AUX
ajlm-760	31	34	to	to	PART
ajlm-760	31	35	review	review	VERB
ajlm-760	31	36	all	all	DET
ajlm-760	31	37	publications	publication	NOUN
ajlm-760	31	38	that	that	PRON
ajlm-760	31	39	have	have	AUX
ajlm-760	31	40	described	describe	VERB
ajlm-760	31	41	the	the	DET
ajlm-760	31	42	use	use	NOUN
ajlm-760	31	43	of	of	ADP
ajlm-760	31	44	molecular	molecular	ADJ
ajlm-760	31	45	subtyping	subtyping	NOUN
ajlm-760	31	46	methodologies	methodology	NOUN
ajlm-760	31	47	to	to	PART
ajlm-760	31	48	investigate	investigate	VERB
ajlm-760	31	49	outbreaks	outbreak	NOUN
ajlm-760	31	50	due	due	ADJ
ajlm-760	31	51	to	to	ADP
ajlm-760	31	52	multidrug	multidrug	VERB
ajlm-760	31	53	-	-	PUNCT
ajlm-760	31	54	resistant	resistant	ADJ
ajlm-760	31	55	enteric	enteric	ADJ
ajlm-760	31	56	bacterial	bacterial	ADJ
ajlm-760	31	57	pathogens	pathogen	NOUN
ajlm-760	31	58	in	in	ADP
ajlm-760	31	59	sub	sub	ADJ
ajlm-760	31	60	-	-	ADJ
ajlm-760	31	61	saharan	saharan	ADJ
ajlm-760	31	62	africa	africa	PROPN
ajlm-760	31	63	.	.	PUNCT
ajlm-760	32	1	the	the	DET
ajlm-760	32	2	review	review	NOUN
ajlm-760	32	3	focuses	focus	VERB
ajlm-760	32	4	on	on	ADP
ajlm-760	32	5	enteric	enteric	ADJ
ajlm-760	32	6	pathogens	pathogen	NOUN
ajlm-760	32	7	belonging	belong	VERB
ajlm-760	32	8	to	to	ADP
ajlm-760	32	9	the	the	DET
ajlm-760	32	10	genus	genus	NOUN
ajlm-760	32	11	and	and	CCONJ
ajlm-760	32	12	species	specie	NOUN
ajlm-760	32	13	of	of	ADP
ajlm-760	32	14	salmonella	salmonella	NOUN
ajlm-760	32	15	,	,	PUNCT
ajlm-760	32	16	vibrio	vibrio	ADJ
ajlm-760	32	17	cholerae	cholerae	PROPN
ajlm-760	32	18	,	,	PUNCT
ajlm-760	32	19	shigella	shigella	PROPN
ajlm-760	32	20	and	and	CCONJ
ajlm-760	32	21	escherichia	escherichia	NOUN
ajlm-760	32	22	coli	coli	NOUN
ajlm-760	32	23	,	,	PUNCT
ajlm-760	32	24	because	because	SCONJ
ajlm-760	32	25	most	most	ADJ
ajlm-760	32	26	molecular	molecular	ADJ
ajlm-760	32	27	epidemiological	epidemiological	ADJ
ajlm-760	32	28	investigations	investigation	NOUN
ajlm-760	32	29	have	have	AUX
ajlm-760	32	30	been	be	AUX
ajlm-760	32	31	described	describe	VERB
ajlm-760	32	32	for	for	ADP
ajlm-760	32	33	these	these	DET
ajlm-760	32	34	microorganisms	microorganism	NOUN
ajlm-760	32	35	.	.	PUNCT
ajlm-760	33	1	the	the	DET
ajlm-760	33	2	aim	aim	NOUN
ajlm-760	33	3	of	of	ADP
ajlm-760	33	4	this	this	DET
ajlm-760	33	5	review	review	NOUN
ajlm-760	33	6	is	be	AUX
ajlm-760	33	7	to	to	PART
ajlm-760	33	8	inform	inform	VERB
ajlm-760	33	9	the	the	DET
ajlm-760	33	10	readers	reader	NOUN
ajlm-760	33	11	about	about	ADP
ajlm-760	33	12	the	the	DET
ajlm-760	33	13	current	current	ADJ
ajlm-760	33	14	status	status	NOUN
ajlm-760	33	15	of	of	ADP
ajlm-760	33	16	molecular	molecular	ADJ
ajlm-760	33	17	subtyping	subtype	VERB
ajlm-760	33	18	capabilities	capability	NOUN
ajlm-760	33	19	and	and	CCONJ
ajlm-760	33	20	activities	activity	NOUN
ajlm-760	33	21	in	in	ADP
ajlm-760	33	22	sub	sub	ADJ
ajlm-760	33	23	-	-	ADJ
ajlm-760	33	24	saharan	saharan	ADJ
ajlm-760	33	25	africa	africa	PROPN
ajlm-760	33	26	and	and	CCONJ
ajlm-760	33	27	finally	finally	ADV
ajlm-760	33	28	suggest	suggest	VERB
ajlm-760	33	29	that	that	SCONJ
ajlm-760	33	30	the	the	DET
ajlm-760	33	31	way	way	NOUN
ajlm-760	33	32	forward	forward	ADV
ajlm-760	33	33	for	for	ADP
ajlm-760	33	34	molecular	molecular	ADJ
ajlm-760	33	35	subtyping	subtyping	NOUN
ajlm-760	33	36	in	in	ADP
ajlm-760	33	37	african	african	ADJ
ajlm-760	33	38	laboratories	laboratory	NOUN
ajlm-760	33	39	is	be	AUX
ajlm-760	33	40	the	the	DET
ajlm-760	33	41	implementation	implementation	NOUN
ajlm-760	33	42	of	of	ADP
ajlm-760	33	43	wgs	wgs	NOUN
ajlm-760	33	44	analysis	analysis	NOUN
ajlm-760	33	45	as	as	ADV
ajlm-760	33	46	soon	soon	ADV
ajlm-760	33	47	as	as	ADP
ajlm-760	33	48	possible	possible	ADJ
ajlm-760	33	49	.	.	PUNCT
ajlm-760	34	1	a	a	DET
ajlm-760	34	2	pubmed	pubmed	PROPN
ajlm-760	34	3	database	database	PROPN
ajlm-760	34	4	literature	literature	PROPN
ajlm-760	34	5	search	search	PROPN
ajlm-760	34	6	(	(	PUNCT
ajlm-760	34	7	english	english	ADJ
ajlm-760	34	8	language	language	NOUN
ajlm-760	34	9	only	only	ADV
ajlm-760	34	10	)	)	PUNCT
ajlm-760	34	11	was	be	AUX
ajlm-760	34	12	performed	perform	VERB
ajlm-760	34	13	using	use	VERB
ajlm-760	34	14	the	the	DET
ajlm-760	34	15	search	search	NOUN
ajlm-760	34	16	strings	string	NOUN
ajlm-760	34	17	:	:	PUNCT
ajlm-760	34	18	‘	'	PUNCT
ajlm-760	34	19	africa	africa	PROPN
ajlm-760	34	20	outbreak	outbreak	PROPN
ajlm-760	34	21	mdr	mdr	PROPN
ajlm-760	34	22	’	'	PUNCT
ajlm-760	34	23	,	,	PUNCT
ajlm-760	34	24	‘	'	PUNCT
ajlm-760	34	25	africa	africa	PROPN
ajlm-760	34	26	outbreak	outbreak	PROPN
ajlm-760	34	27	multi	multi	PROPN
ajlm-760	34	28	’	'	PUNCT
ajlm-760	34	29	,	,	PUNCT
ajlm-760	34	30	‘	'	PUNCT
ajlm-760	34	31	africa	africa	PROPN
ajlm-760	34	32	outbreak	outbreak	PROPN
ajlm-760	34	33	multidrug	multidrug	NOUN
ajlm-760	34	34	’	'	PUNCT
ajlm-760	34	35	,	,	PUNCT
ajlm-760	34	36	‘	'	PUNCT
ajlm-760	34	37	africa	africa	PROPN
ajlm-760	34	38	outbreak	outbreak	PROPN
ajlm-760	34	39	multi	multi	PROPN
ajlm-760	34	40	drug	drug	PROPN
ajlm-760	34	41	’	'	PUNCT
ajlm-760	34	42	,	,	PUNCT
ajlm-760	34	43	‘	'	PUNCT
ajlm-760	34	44	africa	africa	PROPN
ajlm-760	34	45	outbreak	outbreak	PROPN
ajlm-760	34	46	resistance	resistance	PROPN
ajlm-760	34	47	’	'	PUNCT
ajlm-760	34	48	,	,	PUNCT
ajlm-760	34	49	‘	'	PUNCT
ajlm-760	34	50	africa	africa	PROPN
ajlm-760	34	51	outbreak	outbreak	NOUN
ajlm-760	34	52	resistant	resistant	ADJ
ajlm-760	34	53	’	'	PUNCT
ajlm-760	34	54	,	,	PUNCT
ajlm-760	34	55	‘	'	PUNCT
ajlm-760	34	56	africa	africa	PROPN
ajlm-760	34	57	outbreak	outbreak	PROPN
ajlm-760	34	58	drug	drug	PROPN
ajlm-760	34	59	’	'	PUNCT
ajlm-760	34	60	,	,	PUNCT
ajlm-760	34	61	‘	'	PUNCT
ajlm-760	34	62	africa	africa	PROPN
ajlm-760	34	63	outbreak	outbreak	PROPN
ajlm-760	34	64	antibiotic	antibiotic	PROPN
ajlm-760	34	65	’	'	PUNCT
ajlm-760	34	66	,	,	PUNCT
ajlm-760	34	67	‘	'	PUNCT
ajlm-760	34	68	africa	africa	PROPN
ajlm-760	34	69	outbreak	outbreak	PROPN
ajlm-760	34	70	antimicrobial	antimicrobial	NOUN
ajlm-760	34	71	’	'	PUNCT
ajlm-760	34	72	.	.	PUNCT
ajlm-760	35	1	these	these	DET
ajlm-760	35	2	search	search	NOUN
ajlm-760	35	3	strings	string	NOUN
ajlm-760	35	4	were	be	AUX
ajlm-760	35	5	used	use	VERB
ajlm-760	35	6	in	in	ADP
ajlm-760	35	7	combination	combination	NOUN
ajlm-760	35	8	with	with	ADP
ajlm-760	35	9	genus	genus	NOUN
ajlm-760	35	10	and	and	CCONJ
ajlm-760	35	11	species	specie	NOUN
ajlm-760	35	12	names	name	NOUN
ajlm-760	35	13	of	of	ADP
ajlm-760	35	14	the	the	DET
ajlm-760	35	15	organisms	organism	NOUN
ajlm-760	35	16	listed	list	VERB
ajlm-760	35	17	above	above	ADV
ajlm-760	35	18	.	.	PUNCT
ajlm-760	36	1	all	all	DET
ajlm-760	36	2	results	result	NOUN
ajlm-760	36	3	were	be	AUX
ajlm-760	36	4	included	include	VERB
ajlm-760	36	5	in	in	ADP
ajlm-760	36	6	the	the	DET
ajlm-760	36	7	review	review	NOUN
ajlm-760	36	8	.	.	PUNCT
ajlm-760	37	1	nontyphoidal	nontyphoidal	ADJ
ajlm-760	37	2	salmonella	salmonella	NOUN
ajlm-760	37	3	for	for	ADP
ajlm-760	37	4	nontyphoidal	nontyphoidal	ADJ
ajlm-760	37	5	salmonella	salmonella	NOUN
ajlm-760	37	6	(	(	PUNCT
ajlm-760	37	7	nts	nt	NOUN
ajlm-760	37	8	)	)	PUNCT
ajlm-760	37	9	,	,	PUNCT
ajlm-760	37	10	molecular	molecular	ADJ
ajlm-760	37	11	epidemiological	epidemiological	ADJ
ajlm-760	37	12	analysis	analysis	NOUN
ajlm-760	37	13	of	of	ADP
ajlm-760	37	14	salmonella	salmonella	NOUN
ajlm-760	37	15	typhimurium	typhimurium	NOUN
ajlm-760	37	16	and	and	CCONJ
ajlm-760	37	17	salmonella	salmonella	NOUN
ajlm-760	37	18	enteritidis	enteritidi	NOUN
ajlm-760	37	19	are	be	AUX
ajlm-760	37	20	most	most	ADV
ajlm-760	37	21	commonly	commonly	ADV
ajlm-760	37	22	described	describe	VERB
ajlm-760	37	23	in	in	ADP
ajlm-760	37	24	sub	sub	ADJ
ajlm-760	37	25	-	-	ADJ
ajlm-760	37	26	saharan	saharan	ADJ
ajlm-760	37	27	africa	africa	PROPN
ajlm-760	37	28	.	.	PUNCT
ajlm-760	38	1	one	one	NUM
ajlm-760	38	2	of	of	ADP
ajlm-760	38	3	the	the	DET
ajlm-760	38	4	first	first	ADJ
ajlm-760	38	5	reports	report	NOUN
ajlm-760	38	6	using	use	VERB
ajlm-760	38	7	molecular	molecular	ADJ
ajlm-760	38	8	subtyping	subtype	VERB
ajlm-760	38	9	techniques	technique	NOUN
ajlm-760	38	10	to	to	PART
ajlm-760	38	11	investigate	investigate	VERB
ajlm-760	38	12	enteric	enteric	ADJ
ajlm-760	38	13	bacterial	bacterial	ADJ
ajlm-760	38	14	pathogens	pathogen	NOUN
ajlm-760	38	15	isolated	isolate	VERB
ajlm-760	38	16	in	in	ADP
ajlm-760	38	17	sub	sub	ADJ
ajlm-760	38	18	-	-	ADJ
ajlm-760	38	19	saharan	saharan	ADJ
ajlm-760	38	20	africa	africa	PROPN
ajlm-760	38	21	was	be	AUX
ajlm-760	38	22	a	a	DET
ajlm-760	38	23	1991	1991	NUM
ajlm-760	38	24	study	study	NOUN
ajlm-760	38	25	that	that	PRON
ajlm-760	38	26	used	use	VERB
ajlm-760	38	27	plasmid	plasmid	ADJ
ajlm-760	38	28	profiling	profiling	NOUN
ajlm-760	38	29	(	(	PUNCT
ajlm-760	38	30	following	follow	VERB
ajlm-760	38	31	restriction	restriction	NOUN
ajlm-760	38	32	endonuclease	endonuclease	NOUN
ajlm-760	38	33	digestion	digestion	NOUN
ajlm-760	38	34	)	)	PUNCT
ajlm-760	38	35	to	to	PART
ajlm-760	38	36	distinguish	distinguish	VERB
ajlm-760	38	37	african	african	ADJ
ajlm-760	38	38	isolates	isolate	NOUN
ajlm-760	38	39	of	of	ADP
ajlm-760	38	40	salmonella	salmonella	NOUN
ajlm-760	38	41	enteritidis	enteritidi	NOUN
ajlm-760	38	42	from	from	ADP
ajlm-760	38	43	united	united	PROPN
ajlm-760	38	44	states	states	PROPN
ajlm-760	38	45	(	(	PUNCT
ajlm-760	38	46	us	we	PRON
ajlm-760	38	47	)	)	PUNCT
ajlm-760	38	48	isolates.16	isolates.16	VERB
ajlm-760	38	49	molecular	molecular	ADJ
ajlm-760	38	50	subtyping	subtyping	NOUN
ajlm-760	38	51	of	of	ADP
ajlm-760	38	52	nts	nt	NOUN
ajlm-760	38	53	then	then	ADV
ajlm-760	38	54	progressed	progress	VERB
ajlm-760	38	55	to	to	PART
ajlm-760	38	56	pfge	pfge	VERB
ajlm-760	38	57	analysis	analysis	NOUN
ajlm-760	38	58	of	of	ADP
ajlm-760	38	59	mdr	mdr	PROPN
ajlm-760	38	60	salmonella	salmonella	PROPN
ajlm-760	38	61	typhimurium	typhimurium	PROPN
ajlm-760	38	62	isolated	isolate	VERB
ajlm-760	38	63	in	in	ADP
ajlm-760	38	64	kenya	kenya	PROPN
ajlm-760	38	65	,	,	PUNCT
ajlm-760	38	66	where	where	SCONJ
ajlm-760	38	67	64	64	NUM
ajlm-760	38	68	isolates	isolate	NOUN
ajlm-760	38	69	were	be	AUX
ajlm-760	38	70	grouped	group	VERB
ajlm-760	38	71	into	into	ADP
ajlm-760	38	72	eight	eight	NUM
ajlm-760	38	73	pfge	pfge	NOUN
ajlm-760	38	74	clusters	cluster	NOUN
ajlm-760	38	75	and	and	CCONJ
ajlm-760	38	76	were	be	AUX
ajlm-760	38	77	described	describe	VERB
ajlm-760	38	78	as	as	ADP
ajlm-760	38	79	multiclonal.17	multiclonal.17	PROPN
ajlm-760	38	80	salmonella	salmonella	NOUN
ajlm-760	38	81	typhimurium	typhimurium	NOUN
ajlm-760	38	82	accounts	account	VERB
ajlm-760	38	83	for	for	ADP
ajlm-760	38	84	a	a	DET
ajlm-760	38	85	significant	significant	ADJ
ajlm-760	38	86	proportion	proportion	NOUN
ajlm-760	38	87	of	of	ADP
ajlm-760	38	88	reported	report	VERB
ajlm-760	38	89	cases	case	NOUN
ajlm-760	38	90	of	of	ADP
ajlm-760	38	91	nts	nt	NOUN
ajlm-760	38	92	-	-	PUNCT
ajlm-760	38	93	associated	associate	VERB
ajlm-760	38	94	invasive	invasive	ADJ
ajlm-760	38	95	disease	disease	NOUN
ajlm-760	38	96	in	in	ADP
ajlm-760	38	97	sub	sub	ADJ
ajlm-760	38	98	-	-	ADJ
ajlm-760	38	99	saharan	saharan	ADJ
ajlm-760	38	100	africa	africa	PROPN
ajlm-760	38	101	.	.	PUNCT
ajlm-760	39	1	nts	nt	NOUN
ajlm-760	39	2	-	-	PUNCT
ajlm-760	39	3	associated	associate	VERB
ajlm-760	39	4	invasive	invasive	ADJ
ajlm-760	39	5	disease	disease	NOUN
ajlm-760	39	6	has	have	AUX
ajlm-760	39	7	developed	develop	VERB
ajlm-760	39	8	to	to	PART
ajlm-760	39	9	become	become	VERB
ajlm-760	39	10	a	a	DET
ajlm-760	39	11	leading	lead	VERB
ajlm-760	39	12	public	public	ADJ
ajlm-760	39	13	health	health	NOUN
ajlm-760	39	14	challenge	challenge	NOUN
ajlm-760	39	15	in	in	ADP
ajlm-760	39	16	sub	sub	ADJ
ajlm-760	39	17	-	-	ADJ
ajlm-760	39	18	saharan	saharan	ADJ
ajlm-760	39	19	africa.18,19	africa.18,19	NOUN
ajlm-760	39	20	a	a	DET
ajlm-760	39	21	predominant	predominant	ADJ
ajlm-760	39	22	type	type	NOUN
ajlm-760	39	23	of	of	ADP
ajlm-760	39	24	invasive	invasive	ADJ
ajlm-760	39	25	salmonella	salmonella	NOUN
ajlm-760	39	26	typhimurium	typhimurium	NOUN
ajlm-760	39	27	in	in	ADP
ajlm-760	39	28	sub	sub	ADJ
ajlm-760	39	29	-	-	ADJ
ajlm-760	39	30	saharan	saharan	ADJ
ajlm-760	39	31	africa	africa	PROPN
ajlm-760	39	32	is	be	AUX
ajlm-760	39	33	a	a	DET
ajlm-760	39	34	mdr	mdr	NOUN
ajlm-760	39	35	strain	strain	NOUN
ajlm-760	39	36	that	that	PRON
ajlm-760	39	37	has	have	AUX
ajlm-760	39	38	been	be	AUX
ajlm-760	39	39	designated	designate	VERB
ajlm-760	39	40	st313	st313	PROPN
ajlm-760	39	41	(	(	PUNCT
ajlm-760	39	42	based	base	VERB
ajlm-760	39	43	on	on	ADP
ajlm-760	39	44	its	its	PRON
ajlm-760	39	45	mlst	mlst	NOUN
ajlm-760	39	46	profile	profile	NOUN
ajlm-760	39	47	)	)	PUNCT
ajlm-760	39	48	.	.	PUNCT
ajlm-760	40	1	clonal	clonal	ADJ
ajlm-760	40	2	spread	spread	NOUN
ajlm-760	40	3	of	of	ADP
ajlm-760	40	4	this	this	DET
ajlm-760	40	5	mdr	mdr	PROPN
ajlm-760	40	6	st313	st313	PROPN
ajlm-760	40	7	strain	strain	NOUN
ajlm-760	40	8	was	be	AUX
ajlm-760	40	9	first	first	ADV
ajlm-760	40	10	reported	report	VERB
ajlm-760	40	11	from	from	ADP
ajlm-760	40	12	kenya	kenya	PROPN
ajlm-760	40	13	and	and	CCONJ
ajlm-760	40	14	malawi	malawi	PROPN
ajlm-760	40	15	in	in	ADP
ajlm-760	40	16	2009	2009	NUM
ajlm-760	40	17	,	,	PUNCT
ajlm-760	40	18	with	with	ADP
ajlm-760	40	19	the	the	DET
ajlm-760	40	20	strain	strain	NOUN
ajlm-760	40	21	showing	show	VERB
ajlm-760	40	22	resistance	resistance	NOUN
ajlm-760	40	23	to	to	ADP
ajlm-760	40	24	ampicillin	ampicillin	PROPN
ajlm-760	40	25	,	,	PUNCT
ajlm-760	40	26	chloramphenicol	chloramphenicol	NOUN
ajlm-760	40	27	,	,	PUNCT
ajlm-760	40	28	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	40	29	,	,	PUNCT
ajlm-760	40	30	trimethoprim	trimethoprim	NOUN
ajlm-760	40	31	,	,	PUNCT
ajlm-760	40	32	streptomycin	streptomycin	PROPN
ajlm-760	40	33	and	and	CCONJ
ajlm-760	40	34	kanamycin.20	kanamycin.20	PROPN
ajlm-760	40	35	in	in	ADP
ajlm-760	40	36	kenya	kenya	PROPN
ajlm-760	40	37	,	,	PUNCT
ajlm-760	40	38	a	a	DET
ajlm-760	40	39	more	more	ADV
ajlm-760	40	40	recent	recent	ADJ
ajlm-760	40	41	analysis	analysis	NOUN
ajlm-760	40	42	of	of	ADP
ajlm-760	40	43	salmonella	salmonella	NOUN
ajlm-760	40	44	typhimurium	typhimurium	PRON
ajlm-760	40	45	outbreak	outbreak	NOUN
ajlm-760	40	46	isolates	isolate	NOUN
ajlm-760	40	47	,	,	PUNCT
ajlm-760	40	48	using	use	VERB
ajlm-760	40	49	wgs	wgs	NOUN
ajlm-760	40	50	-	-	PUNCT
ajlm-760	40	51	snp	snp	NOUN
ajlm-760	40	52	analysis	analysis	NOUN
ajlm-760	40	53	,	,	PUNCT
ajlm-760	40	54	identified	identify	VERB
ajlm-760	40	55	a	a	DET
ajlm-760	40	56	single	single	ADJ
ajlm-760	40	57	clade	clade	NOUN
ajlm-760	40	58	of	of	ADP
ajlm-760	40	59	mdr	mdr	PROPN
ajlm-760	40	60	st313	st313	PROPN
ajlm-760	40	61	strains	strain	VERB
ajlm-760	40	62	showing	show	VERB
ajlm-760	40	63	resistance	resistance	NOUN
ajlm-760	40	64	to	to	ADP
ajlm-760	40	65	ampicillin	ampicillin	PROPN
ajlm-760	40	66	,	,	PUNCT
ajlm-760	40	67	ceftriaxone	ceftriaxone	PROPN
ajlm-760	40	68	,	,	PUNCT
ajlm-760	40	69	chloramphenicol	chloramphenicol	NOUN
ajlm-760	40	70	,	,	PUNCT
ajlm-760	40	71	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	40	72	and	and	CCONJ
ajlm-760	40	73	trimethoprim	trimethoprim	NOUN
ajlm-760	40	74	;	;	PUNCT
ajlm-760	40	75	extended	extend	VERB
ajlm-760	40	76	-	-	PUNCT
ajlm-760	40	77	spectrum	spectrum	NOUN
ajlm-760	40	78	beta	beta	NOUN
ajlm-760	40	79	lactamase	lactamase	NOUN
ajlm-760	40	80	(	(	PUNCT
ajlm-760	40	81	esbl	esbl	NOUN
ajlm-760	40	82	)	)	PUNCT
ajlm-760	40	83	genes	gene	NOUN
ajlm-760	40	84	blactx	blactx	NOUN
ajlm-760	40	85	-	-	PUNCT
ajlm-760	40	86	m-15	m-15	PROPN
ajlm-760	40	87	,	,	PUNCT
ajlm-760	40	88	blatem-1	blatem-1	NUM
ajlm-760	40	89	and	and	CCONJ
ajlm-760	40	90	blaoxa-1	blaoxa-1	NUM
ajlm-760	40	91	were	be	AUX
ajlm-760	40	92	also	also	ADV
ajlm-760	40	93	harboured	harbour	VERB
ajlm-760	40	94	by	by	ADP
ajlm-760	40	95	the	the	DET
ajlm-760	40	96	isolates.21	isolates.21	PROPN
ajlm-760	40	97	the	the	DET
ajlm-760	40	98	mdr	mdr	PROPN
ajlm-760	40	99	st313	st313	PROPN
ajlm-760	40	100	has	have	AUX
ajlm-760	40	101	further	far	ADV
ajlm-760	40	102	been	be	AUX
ajlm-760	40	103	reported	report	VERB
ajlm-760	40	104	from	from	ADP
ajlm-760	40	105	malawi	malawi	PROPN
ajlm-760	40	106	,	,	PUNCT
ajlm-760	40	107	nigeria	nigeria	PROPN
ajlm-760	40	108	,	,	PUNCT
ajlm-760	40	109	democratic	democratic	ADJ
ajlm-760	40	110	republic	republic	NOUN
ajlm-760	40	111	of	of	ADP
ajlm-760	40	112	the	the	DET
ajlm-760	40	113	congo	congo	NOUN
ajlm-760	40	114	and	and	CCONJ
ajlm-760	40	115	south	south	ADJ
ajlm-760	40	116	africa.22,23,24	africa.22,23,24	X
ajlm-760	40	117	leekitcharoenphon	leekitcharoenphon	PROPN
ajlm-760	40	118	and	and	CCONJ
ajlm-760	40	119	coworkers22	coworkers22	NOUN
ajlm-760	40	120	used	use	VERB
ajlm-760	40	121	mlst	mlst	NOUN
ajlm-760	40	122	,	,	PUNCT
ajlm-760	40	123	pfge	pfge	NOUN
ajlm-760	40	124	and	and	CCONJ
ajlm-760	40	125	wgs	wgs	NOUN
ajlm-760	40	126	-	-	PUNCT
ajlm-760	40	127	snp	snp	NOUN
ajlm-760	40	128	analysis	analysis	NOUN
ajlm-760	40	129	to	to	PART
ajlm-760	40	130	describe	describe	VERB
ajlm-760	40	131	a	a	DET
ajlm-760	40	132	close	close	ADJ
ajlm-760	40	133	relationship	relationship	NOUN
ajlm-760	40	134	between	between	ADP
ajlm-760	40	135	mdr	mdr	PROPN
ajlm-760	40	136	st313	st313	PROPN
ajlm-760	40	137	strains	strain	VERB
ajlm-760	40	138	from	from	ADP
ajlm-760	40	139	nigeria	nigeria	PROPN
ajlm-760	40	140	and	and	CCONJ
ajlm-760	40	141	democratic	democratic	PROPN
ajlm-760	40	142	republic	republic	NOUN
ajlm-760	40	143	of	of	ADP
ajlm-760	40	144	the	the	DET
ajlm-760	40	145	congo	congo	NOUN
ajlm-760	40	146	;	;	PUNCT
ajlm-760	40	147	strains	strain	NOUN
ajlm-760	40	148	were	be	AUX
ajlm-760	40	149	isolated	isolate	VERB
ajlm-760	40	150	from	from	ADP
ajlm-760	40	151	invasive	invasive	ADJ
ajlm-760	40	152	(	(	PUNCT
ajlm-760	40	153	blood	blood	NOUN
ajlm-760	40	154	)	)	PUNCT
ajlm-760	40	155	and	and	CCONJ
ajlm-760	40	156	non	non	ADJ
ajlm-760	40	157	-	-	ADJ
ajlm-760	40	158	invasive	invasive	ADJ
ajlm-760	40	159	(	(	PUNCT
ajlm-760	40	160	stool	stool	NOUN
ajlm-760	40	161	)	)	PUNCT
ajlm-760	40	162	specimens	specimen	NOUN
ajlm-760	40	163	;	;	PUNCT
ajlm-760	40	164	all	all	DET
ajlm-760	40	165	isolates	isolate	NOUN
ajlm-760	40	166	harboured	harbour	VERB
ajlm-760	40	167	blatem1b	blatem1b	ADJ
ajlm-760	40	168	,	,	PUNCT
ajlm-760	40	169	cata1	cata1	NOUN
ajlm-760	40	170	,	,	PUNCT
ajlm-760	40	171	stra	stra	PROPN
ajlm-760	40	172	/	/	SYM
ajlm-760	40	173	b	b	PROPN
ajlm-760	40	174	,	,	PUNCT
ajlm-760	40	175	sul1	sul1	PROPN
ajlm-760	40	176	,	,	PUNCT
ajlm-760	40	177	and	and	CCONJ
ajlm-760	40	178	dfra1	dfra1	NOUN
ajlm-760	40	179	genes	gene	NOUN
ajlm-760	40	180	coding	code	VERB
ajlm-760	40	181	for	for	ADP
ajlm-760	40	182	resistance	resistance	NOUN
ajlm-760	40	183	to	to	ADP
ajlm-760	40	184	various	various	ADJ
ajlm-760	40	185	classes	class	NOUN
ajlm-760	40	186	of	of	ADP
ajlm-760	40	187	antimicrobial	antimicrobial	ADJ
ajlm-760	40	188	agents	agent	NOUN
ajlm-760	40	189	.	.	PUNCT
ajlm-760	41	1	keddy	keddy	PROPN
ajlm-760	41	2	and	and	CCONJ
ajlm-760	41	3	coworkers23	coworkers23	NOUN
ajlm-760	41	4	used	use	VERB
ajlm-760	41	5	mlst	mlst	NOUN
ajlm-760	41	6	to	to	PART
ajlm-760	41	7	investigate	investigate	VERB
ajlm-760	41	8	salmonella	salmonella	NOUN
ajlm-760	41	9	typhimurium	typhimurium	PRON
ajlm-760	41	10	isolates	isolate	NOUN
ajlm-760	41	11	from	from	ADP
ajlm-760	41	12	south	south	PROPN
ajlm-760	41	13	africa	africa	PROPN
ajlm-760	41	14	and	and	CCONJ
ajlm-760	41	15	reported	report	VERB
ajlm-760	41	16	that	that	SCONJ
ajlm-760	41	17	nts	nt	NOUN
ajlm-760	41	18	meningitis	meningitis	PROPN
ajlm-760	41	19	in	in	ADP
ajlm-760	41	20	south	south	PROPN
ajlm-760	41	21	africa	africa	PROPN
ajlm-760	41	22	was	be	AUX
ajlm-760	41	23	highly	highly	ADV
ajlm-760	41	24	associated	associate	VERB
ajlm-760	41	25	with	with	ADP
ajlm-760	41	26	the	the	DET
ajlm-760	41	27	mdr	mdr	PROPN
ajlm-760	41	28	st313	st313	PROPN
ajlm-760	41	29	strain	strain	NOUN
ajlm-760	41	30	.	.	PUNCT
ajlm-760	42	1	besides	besides	SCONJ
ajlm-760	42	2	salmonella	salmonella	PROPN
ajlm-760	42	3	typhimurium	typhimurium	NOUN
ajlm-760	42	4	,	,	PUNCT
ajlm-760	42	5	salmonella	salmonella	NOUN
ajlm-760	42	6	enteritidis	enteritidi	NOUN
ajlm-760	42	7	is	be	AUX
ajlm-760	42	8	also	also	ADV
ajlm-760	42	9	a	a	DET
ajlm-760	42	10	major	major	ADJ
ajlm-760	42	11	player	player	NOUN
ajlm-760	42	12	with	with	ADP
ajlm-760	42	13	regard	regard	NOUN
ajlm-760	42	14	to	to	ADP
ajlm-760	42	15	nts	nt	NOUN
ajlm-760	42	16	-	-	PUNCT
ajlm-760	42	17	associated	associate	VERB
ajlm-760	42	18	invasive	invasive	ADJ
ajlm-760	42	19	disease	disease	NOUN
ajlm-760	42	20	in	in	ADP
ajlm-760	42	21	sub	sub	ADJ
ajlm-760	42	22	-	-	ADJ
ajlm-760	42	23	saharan	saharan	ADJ
ajlm-760	42	24	africa	africa	PROPN
ajlm-760	42	25	.	.	PUNCT
ajlm-760	43	1	feasey	feasey	ADJ
ajlm-760	43	2	and	and	CCONJ
ajlm-760	43	3	coworkers25	coworkers25	NOUN
ajlm-760	43	4	used	use	VERB
ajlm-760	43	5	wgs	wgs	NOUN
ajlm-760	43	6	-	-	PUNCT
ajlm-760	43	7	snp	snp	NOUN
ajlm-760	43	8	analysis	analysis	NOUN
ajlm-760	43	9	to	to	PART
ajlm-760	43	10	investigate	investigate	VERB
ajlm-760	43	11	675	675	NUM
ajlm-760	43	12	salmonella	salmonella	NOUN
ajlm-760	43	13	enteritidis	enteritidis	NOUN
ajlm-760	43	14	isolates	isolate	NOUN
ajlm-760	43	15	from	from	ADP
ajlm-760	43	16	45	45	NUM
ajlm-760	43	17	countries	country	NOUN
ajlm-760	43	18	(	(	PUNCT
ajlm-760	43	19	including	include	VERB
ajlm-760	43	20	28	28	NUM
ajlm-760	43	21	african	african	ADJ
ajlm-760	43	22	countries	country	NOUN
ajlm-760	43	23	)	)	PUNCT
ajlm-760	43	24	,	,	PUNCT
ajlm-760	43	25	to	to	PART
ajlm-760	43	26	describe	describe	VERB
ajlm-760	43	27	the	the	DET
ajlm-760	43	28	existence	existence	NOUN
ajlm-760	43	29	of	of	ADP
ajlm-760	43	30	one	one	NUM
ajlm-760	43	31	global	global	ADJ
ajlm-760	43	32	epidemic	epidemic	NOUN
ajlm-760	43	33	clade	clade	NOUN
ajlm-760	43	34	and	and	CCONJ
ajlm-760	43	35	two	two	NUM
ajlm-760	43	36	‘	'	PUNCT
ajlm-760	43	37	african	african	ADJ
ajlm-760	43	38	’	'	PUNCT
ajlm-760	43	39	clades	clade	NOUN
ajlm-760	43	40	,	,	PUNCT
ajlm-760	43	41	of	of	ADP
ajlm-760	43	42	which	which	PRON
ajlm-760	43	43	the	the	DET
ajlm-760	43	44	african	african	ADJ
ajlm-760	43	45	clades	clade	NOUN
ajlm-760	43	46	are	be	AUX
ajlm-760	43	47	geographically	geographically	ADV
ajlm-760	43	48	confined	confine	VERB
ajlm-760	43	49	to	to	ADP
ajlm-760	43	50	specific	specific	ADJ
ajlm-760	43	51	regions	region	NOUN
ajlm-760	43	52	of	of	ADP
ajlm-760	43	53	sub	sub	ADJ
ajlm-760	43	54	-	-	ADJ
ajlm-760	43	55	saharan	saharan	ADJ
ajlm-760	43	56	africa	africa	PROPN
ajlm-760	43	57	.	.	PUNCT
ajlm-760	44	1	both	both	DET
ajlm-760	44	2	african	african	ADJ
ajlm-760	44	3	clades	clade	NOUN
ajlm-760	44	4	show	show	VERB
ajlm-760	44	5	mdr	mdr	PROPN
ajlm-760	44	6	,	,	PUNCT
ajlm-760	44	7	with	with	ADP
ajlm-760	44	8	an	an	DET
ajlm-760	44	9	enlarged	enlarge	VERB
ajlm-760	44	10	mdr	mdr	PROPN
ajlm-760	44	11	virulence	virulence	NOUN
ajlm-760	44	12	plasmid	plasmid	NOUN
ajlm-760	44	13	.	.	PUNCT
ajlm-760	45	1	both	both	DET
ajlm-760	45	2	african	african	ADJ
ajlm-760	45	3	clades	clade	NOUN
ajlm-760	45	4	also	also	ADV
ajlm-760	45	5	show	show	VERB
ajlm-760	45	6	patterns	pattern	NOUN
ajlm-760	45	7	of	of	ADP
ajlm-760	45	8	genomic	genomic	ADJ
ajlm-760	45	9	degradation	degradation	NOUN
ajlm-760	45	10	with	with	ADP
ajlm-760	45	11	a	a	DET
ajlm-760	45	12	similarity	similarity	NOUN
ajlm-760	45	13	to	to	ADP
ajlm-760	45	14	those	those	PRON
ajlm-760	45	15	shown	show	VERB
ajlm-760	45	16	by	by	ADP
ajlm-760	45	17	other	other	ADJ
ajlm-760	45	18	host	host	NOUN
ajlm-760	45	19	-	-	PUNCT
ajlm-760	45	20	restricted	restrict	VERB
ajlm-760	45	21	invasive	invasive	ADJ
ajlm-760	45	22	salmonella	salmonella	NOUN
ajlm-760	45	23	serotypes	serotype	NOUN
ajlm-760	45	24	described	describe	VERB
ajlm-760	45	25	in	in	ADP
ajlm-760	45	26	africa	africa	PROPN
ajlm-760	45	27	:	:	PUNCT
ajlm-760	45	28	patterns	pattern	NOUN
ajlm-760	45	29	of	of	ADP
ajlm-760	45	30	genomic	genomic	ADJ
ajlm-760	45	31	degradation	degradation	NOUN
ajlm-760	45	32	similar	similar	ADJ
ajlm-760	45	33	to	to	ADP
ajlm-760	45	34	the	the	DET
ajlm-760	45	35	african	african	ADJ
ajlm-760	45	36	salmonella	salmonella	NOUN
ajlm-760	45	37	typhimurium	typhimurium	PRON
ajlm-760	45	38	st313	st313	PROPN
ajlm-760	45	39	clade	clade	NOUN
ajlm-760	45	40	.	.	PUNCT
ajlm-760	46	1	pulsed	pulse	VERB
ajlm-760	46	2	-	-	PUNCT
ajlm-760	46	3	field	field	NOUN
ajlm-760	46	4	gel	gel	NOUN
ajlm-760	46	5	electrophoresis	electrophoresis	NOUN
ajlm-760	46	6	analysis	analysis	NOUN
ajlm-760	46	7	is	be	AUX
ajlm-760	46	8	commonly	commonly	ADV
ajlm-760	46	9	used	use	VERB
ajlm-760	46	10	to	to	PART
ajlm-760	46	11	investigate	investigate	VERB
ajlm-760	46	12	outbreaks	outbreak	NOUN
ajlm-760	46	13	of	of	ADP
ajlm-760	46	14	salmonella	salmonella	NOUN
ajlm-760	46	15	enteritidis.26,27,28	enteritidis.26,27,28	X
ajlm-760	46	16	niehaus	niehaus	NOUN
ajlm-760	46	17	and	and	CCONJ
ajlm-760	46	18	coworkers26	coworkers26	NOUN
ajlm-760	46	19	reported	report	VERB
ajlm-760	46	20	on	on	ADP
ajlm-760	46	21	a	a	DET
ajlm-760	46	22	salmonella	salmonella	NOUN
ajlm-760	46	23	enteritidis	enteritidi	NOUN
ajlm-760	46	24	foodborne	foodborne	VERB
ajlm-760	46	25	outbreak	outbreak	NOUN
ajlm-760	46	26	in	in	ADP
ajlm-760	46	27	south	south	PROPN
ajlm-760	46	28	africa	africa	PROPN
ajlm-760	46	29	,	,	PUNCT
ajlm-760	46	30	where	where	SCONJ
ajlm-760	46	31	human	human	ADJ
ajlm-760	46	32	isolates	isolate	NOUN
ajlm-760	46	33	and	and	CCONJ
ajlm-760	46	34	a	a	DET
ajlm-760	46	35	food	food	NOUN
ajlm-760	46	36	isolate	isolate	NOUN
ajlm-760	46	37	were	be	AUX
ajlm-760	46	38	shown	show	VERB
ajlm-760	46	39	to	to	PART
ajlm-760	46	40	have	have	VERB
ajlm-760	46	41	an	an	DET
ajlm-760	46	42	indistinguishable	indistinguishable	ADJ
ajlm-760	46	43	pfge	pfge	NOUN
ajlm-760	46	44	pattern	pattern	NOUN
ajlm-760	46	45	.	.	PUNCT
ajlm-760	47	1	salmonella	salmonella	NOUN
ajlm-760	47	2	enteritidis	enteritidis	NOUN
ajlm-760	47	3	investigations	investigation	NOUN
ajlm-760	47	4	have	have	AUX
ajlm-760	47	5	also	also	ADV
ajlm-760	47	6	included	include	VERB
ajlm-760	47	7	nosocomial	nosocomial	ADJ
ajlm-760	47	8	outbreaks	outbreak	NOUN
ajlm-760	47	9	;	;	PUNCT
ajlm-760	47	10	vaagland	vaagland	NOUN
ajlm-760	47	11	and	and	CCONJ
ajlm-760	47	12	coworkers28	coworkers28	PROPN
ajlm-760	47	13	investigated	investigate	VERB
ajlm-760	47	14	a	a	DET
ajlm-760	47	15	nosocomial	nosocomial	ADJ
ajlm-760	47	16	outbreak	outbreak	NOUN
ajlm-760	47	17	of	of	ADP
ajlm-760	47	18	neonatal	neonatal	ADJ
ajlm-760	47	19	salmonella	salmonella	NOUN
ajlm-760	47	20	enteritidis	enteritidi	NOUN
ajlm-760	47	21	in	in	ADP
ajlm-760	47	22	tanzania	tanzania	PROPN
ajlm-760	47	23	,	,	PUNCT
ajlm-760	47	24	with	with	ADP
ajlm-760	47	25	pfge	pfge	NOUN
ajlm-760	47	26	analysis	analysis	NOUN
ajlm-760	47	27	of	of	ADP
ajlm-760	47	28	mdr	mdr	PROPN
ajlm-760	47	29	(	(	PUNCT
ajlm-760	47	30	ampicillin	ampicillin	PROPN
ajlm-760	47	31	,	,	PUNCT
ajlm-760	47	32	chloramphenicol	chloramphenicol	NOUN
ajlm-760	47	33	and	and	CCONJ
ajlm-760	47	34	cefuroxime	cefuroxime	ADJ
ajlm-760	47	35	)	)	PUNCT
ajlm-760	47	36	isolates	isolate	NOUN
ajlm-760	47	37	suggesting	suggest	VERB
ajlm-760	47	38	a	a	DET
ajlm-760	47	39	clonal	clonal	ADJ
ajlm-760	47	40	outbreak	outbreak	NOUN
ajlm-760	47	41	.	.	PUNCT
ajlm-760	48	1	more	more	ADV
ajlm-760	48	2	recently	recently	ADV
ajlm-760	48	3	,	,	PUNCT
ajlm-760	48	4	mlva	mlva	PROPN
ajlm-760	48	5	has	have	AUX
ajlm-760	48	6	proven	prove	VERB
ajlm-760	48	7	a	a	DET
ajlm-760	48	8	suitable	suitable	ADJ
ajlm-760	48	9	method	method	NOUN
ajlm-760	48	10	to	to	PART
ajlm-760	48	11	investigate	investigate	VERB
ajlm-760	48	12	the	the	DET
ajlm-760	48	13	molecular	molecular	ADJ
ajlm-760	48	14	epidemiology	epidemiology	NOUN
ajlm-760	48	15	of	of	ADP
ajlm-760	48	16	salmonella	salmonella	NOUN
ajlm-760	48	17	enteritidis	enteritidi	NOUN
ajlm-760	48	18	in	in	ADP
ajlm-760	48	19	south	south	PROPN
ajlm-760	48	20	africa	africa	PROPN
ajlm-760	48	21	;	;	PUNCT
ajlm-760	48	22	mlva	mlva	PROPN
ajlm-760	48	23	was	be	AUX
ajlm-760	48	24	used	use	VERB
ajlm-760	48	25	to	to	PART
ajlm-760	48	26	investigate	investigate	VERB
ajlm-760	48	27	multiple	multiple	ADJ
ajlm-760	48	28	foodborne	foodborne	ADJ
ajlm-760	48	29	outbreaks	outbreak	NOUN
ajlm-760	48	30	over	over	ADP
ajlm-760	48	31	the	the	DET
ajlm-760	48	32	period	period	NOUN
ajlm-760	48	33	2013–2015	2013–2015	NUM
ajlm-760	48	34	;	;	PUNCT
ajlm-760	48	35	mlva	mlva	NOUN
ajlm-760	48	36	was	be	AUX
ajlm-760	48	37	able	able	ADJ
ajlm-760	48	38	to	to	PART
ajlm-760	48	39	cluster	cluster	VERB
ajlm-760	48	40	outbreak	outbreak	NOUN
ajlm-760	48	41	isolates	isolate	NOUN
ajlm-760	48	42	according	accord	VERB
ajlm-760	48	43	to	to	ADP
ajlm-760	48	44	distinct	distinct	ADJ
ajlm-760	48	45	mlva	mlva	ADJ
ajlm-760	48	46	profiles.29	profiles.29	NOUN
ajlm-760	48	47	nosocomial	nosocomial	ADJ
ajlm-760	48	48	outbreaks	outbreak	NOUN
ajlm-760	48	49	have	have	AUX
ajlm-760	48	50	also	also	ADV
ajlm-760	48	51	been	be	AUX
ajlm-760	48	52	investigated	investigate	VERB
ajlm-760	48	53	in	in	ADP
ajlm-760	48	54	south	south	PROPN
ajlm-760	48	55	africa	africa	PROPN
ajlm-760	48	56	,	,	PUNCT
ajlm-760	48	57	where	where	SCONJ
ajlm-760	48	58	salmonella	salmonella	PROPN
ajlm-760	48	59	isangi	isangi	VERB
ajlm-760	48	60	and	and	CCONJ
ajlm-760	48	61	salmonella	salmonella	NOUN
ajlm-760	48	62	typhimurium	typhimurium	NOUN
ajlm-760	48	63	have	have	AUX
ajlm-760	48	64	been	be	AUX
ajlm-760	48	65	involved.30,31	involved.30,31	ADJ
ajlm-760	48	66	wadula	wadula	NOUN
ajlm-760	48	67	and	and	CCONJ
ajlm-760	48	68	coworkers30	coworkers30	NOUN
ajlm-760	48	69	used	use	VERB
ajlm-760	48	70	pfge	pfge	NOUN
ajlm-760	48	71	analysis	analysis	NOUN
ajlm-760	48	72	to	to	PART
ajlm-760	48	73	show	show	VERB
ajlm-760	48	74	clonality	clonality	NOUN
ajlm-760	48	75	among	among	ADP
ajlm-760	48	76	esbl	esbl	NOUN
ajlm-760	48	77	-	-	PUNCT
ajlm-760	48	78	producing	produce	VERB
ajlm-760	48	79	salmonella	salmonella	NOUN
ajlm-760	48	80	isangi	isangi	VERB
ajlm-760	48	81	in	in	ADP
ajlm-760	48	82	paediatric	paediatric	ADJ
ajlm-760	48	83	hospital	hospital	NOUN
ajlm-760	48	84	wards	ward	NOUN
ajlm-760	48	85	.	.	PUNCT
ajlm-760	49	1	smith	smith	PROPN
ajlm-760	49	2	and	and	CCONJ
ajlm-760	49	3	coworkers31	coworkers31	NOUN
ajlm-760	49	4	used	use	VERB
ajlm-760	49	5	pfge	pfge	NOUN
ajlm-760	49	6	analysis	analysis	NOUN
ajlm-760	49	7	,	,	PUNCT
ajlm-760	49	8	mlva	mlva	NOUN
ajlm-760	49	9	and	and	CCONJ
ajlm-760	49	10	mlst	mlst	NOUN
ajlm-760	49	11	to	to	PART
ajlm-760	49	12	investigate	investigate	VERB
ajlm-760	49	13	an	an	DET
ajlm-760	49	14	esbl	esbl	NOUN
ajlm-760	49	15	-	-	PUNCT
ajlm-760	49	16	producing	produce	VERB
ajlm-760	49	17	salmonella	salmonella	NOUN
ajlm-760	49	18	typhimurium	typhimurium	PRON
ajlm-760	49	19	outbreak	outbreak	NOUN
ajlm-760	49	20	in	in	ADP
ajlm-760	49	21	a	a	DET
ajlm-760	49	22	paediatric	paediatric	ADJ
ajlm-760	49	23	hospital	hospital	NOUN
ajlm-760	49	24	ward	ward	NOUN
ajlm-760	49	25	;	;	PUNCT
ajlm-760	49	26	outbreak	outbreak	NOUN
ajlm-760	49	27	isolates	isolate	NOUN
ajlm-760	49	28	showed	show	VERB
ajlm-760	49	29	indistinguishable	indistinguishable	ADJ
ajlm-760	49	30	molecular	molecular	ADJ
ajlm-760	49	31	subtyping	subtype	VERB
ajlm-760	49	32	profiles	profile	NOUN
ajlm-760	49	33	including	include	VERB
ajlm-760	49	34	an	an	DET
ajlm-760	49	35	mlst	mlst	NOUN
ajlm-760	49	36	subtype	subtype	NOUN
ajlm-760	49	37	of	of	ADP
ajlm-760	49	38	st34	st34	PROPN
ajlm-760	49	39	,	,	PUNCT
ajlm-760	49	40	and	and	CCONJ
ajlm-760	49	41	showed	show	VERB
ajlm-760	49	42	resistance	resistance	NOUN
ajlm-760	49	43	to	to	ADP
ajlm-760	49	44	ampicillin	ampicillin	PROPN
ajlm-760	49	45	,	,	PUNCT
ajlm-760	49	46	ceftriaxone	ceftriaxone	PROPN
ajlm-760	49	47	,	,	PUNCT
ajlm-760	49	48	trimethoprim	trimethoprim	NOUN
ajlm-760	49	49	,	,	PUNCT
ajlm-760	49	50	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	49	51	,	,	PUNCT
ajlm-760	49	52	chloramphenicol	chloramphenicol	NOUN
ajlm-760	49	53	and	and	CCONJ
ajlm-760	49	54	tetracycline	tetracycline	NOUN
ajlm-760	49	55	.	.	PUNCT
ajlm-760	50	1	typhoidal	typhoidal	NOUN
ajlm-760	50	2	salmonella	salmonella	NOUN
ajlm-760	50	3	in	in	ADP
ajlm-760	50	4	2004	2004	NUM
ajlm-760	50	5	,	,	PUNCT
ajlm-760	50	6	kariuki	kariuki	PROPN
ajlm-760	50	7	and	and	CCONJ
ajlm-760	50	8	coworkers32	coworkers32	NOUN
ajlm-760	50	9	documented	document	VERB
ajlm-760	50	10	one	one	NUM
ajlm-760	50	11	of	of	ADP
ajlm-760	50	12	the	the	DET
ajlm-760	50	13	first	first	ADJ
ajlm-760	50	14	reports	report	NOUN
ajlm-760	50	15	using	use	VERB
ajlm-760	50	16	molecular	molecular	ADJ
ajlm-760	50	17	subtyping	subtype	VERB
ajlm-760	50	18	techniques	technique	NOUN
ajlm-760	50	19	to	to	PART
ajlm-760	50	20	characterise	characterise	VERB
ajlm-760	50	21	mdr	mdr	PROPN
ajlm-760	50	22	salmonella	salmonella	PROPN
ajlm-760	50	23	typhi	typhi	VERB
ajlm-760	50	24	isolated	isolate	VERB
ajlm-760	50	25	in	in	ADP
ajlm-760	50	26	africa	africa	PROPN
ajlm-760	50	27	.	.	PUNCT
ajlm-760	51	1	they	they	PRON
ajlm-760	51	2	used	use	VERB
ajlm-760	51	3	pfge	pfge	NOUN
ajlm-760	51	4	analysis	analysis	NOUN
ajlm-760	51	5	to	to	PART
ajlm-760	51	6	investigate	investigate	VERB
ajlm-760	51	7	102	102	NUM
ajlm-760	51	8	kenyan	kenyan	ADJ
ajlm-760	51	9	outbreak	outbreak	NOUN
ajlm-760	51	10	isolates	isolate	NOUN
ajlm-760	51	11	of	of	ADP
ajlm-760	51	12	salmonella	salmonella	NOUN
ajlm-760	51	13	typhi	typhi	ADV
ajlm-760	51	14	and	and	CCONJ
ajlm-760	51	15	identified	identify	VERB
ajlm-760	51	16	two	two	NUM
ajlm-760	51	17	distinct	distinct	ADJ
ajlm-760	51	18	subtypes	subtype	NOUN
ajlm-760	51	19	among	among	ADP
ajlm-760	51	20	the	the	DET
ajlm-760	51	21	infecting	infecting	ADJ
ajlm-760	51	22	isolates	isolate	NOUN
ajlm-760	51	23	;	;	PUNCT
ajlm-760	51	24	82	82	NUM
ajlm-760	51	25	%	%	NOUN
ajlm-760	51	26	of	of	ADP
ajlm-760	51	27	the	the	DET
ajlm-760	51	28	isolates	isolate	NOUN
ajlm-760	51	29	were	be	AUX
ajlm-760	51	30	mdr	mdr	PROPN
ajlm-760	51	31	with	with	ADP
ajlm-760	51	32	resistance	resistance	NOUN
ajlm-760	51	33	to	to	ADP
ajlm-760	51	34	ampicillin	ampicillin	PROPN
ajlm-760	51	35	,	,	PUNCT
ajlm-760	51	36	chloramphenicol	chloramphenicol	NOUN
ajlm-760	51	37	,	,	PUNCT
ajlm-760	51	38	tetracycline	tetracycline	NOUN
ajlm-760	51	39	,	,	PUNCT
ajlm-760	51	40	streptomycin	streptomycin	NOUN
ajlm-760	51	41	and	and	CCONJ
ajlm-760	51	42	cotrimoxazole	cotrimoxazole	PROPN
ajlm-760	51	43	.	.	PUNCT
ajlm-760	52	1	when	when	SCONJ
ajlm-760	52	2	pfge	pfge	NOUN
ajlm-760	52	3	analysis	analysis	NOUN
ajlm-760	52	4	is	be	AUX
ajlm-760	52	5	standardised	standardise	VERB
ajlm-760	52	6	,	,	PUNCT
ajlm-760	52	7	as	as	SCONJ
ajlm-760	52	8	is	be	AUX
ajlm-760	52	9	the	the	DET
ajlm-760	52	10	case	case	NOUN
ajlm-760	52	11	with	with	ADP
ajlm-760	52	12	pulsenet	pulsenet	NOUN
ajlm-760	52	13	methodology	methodology	NOUN
ajlm-760	52	14	employed	employ	VERB
ajlm-760	52	15	by	by	ADP
ajlm-760	52	16	participating	participate	VERB
ajlm-760	52	17	pulsenet	pulsenet	NOUN
ajlm-760	52	18	international	international	ADJ
ajlm-760	52	19	laboratories	laboratory	NOUN
ajlm-760	52	20	,	,	PUNCT
ajlm-760	52	21	then	then	ADV
ajlm-760	52	22	inter	inter	ADJ
ajlm-760	52	23	-	-	ADJ
ajlm-760	52	24	laboratory	laboratory	ADJ
ajlm-760	52	25	comparison	comparison	NOUN
ajlm-760	52	26	of	of	ADP
ajlm-760	52	27	pfge	pfge	NOUN
ajlm-760	52	28	patterns	pattern	NOUN
ajlm-760	52	29	can	can	AUX
ajlm-760	52	30	occur	occur	VERB
ajlm-760	52	31	,	,	PUNCT
ajlm-760	52	32	to	to	PART
ajlm-760	52	33	allow	allow	VERB
ajlm-760	52	34	for	for	ADP
ajlm-760	52	35	a	a	DET
ajlm-760	52	36	global	global	ADJ
ajlm-760	52	37	investigation	investigation	NOUN
ajlm-760	52	38	of	of	ADP
ajlm-760	52	39	outbreak	outbreak	NOUN
ajlm-760	52	40	isolates	isolate	NOUN
ajlm-760	52	41	and	and	CCONJ
ajlm-760	52	42	tracking	tracking	NOUN
ajlm-760	52	43	of	of	ADP
ajlm-760	52	44	emerging	emerge	VERB
ajlm-760	52	45	strains	strain	NOUN
ajlm-760	52	46	.	.	PUNCT
ajlm-760	53	1	such	such	ADJ
ajlm-760	53	2	was	be	AUX
ajlm-760	53	3	the	the	DET
ajlm-760	53	4	case	case	NOUN
ajlm-760	53	5	reported	report	VERB
ajlm-760	53	6	by	by	ADP
ajlm-760	53	7	smith	smith	NOUN
ajlm-760	53	8	and	and	CCONJ
ajlm-760	53	9	coworkers,4	coworkers,4	NOUN
ajlm-760	53	10	who	who	PRON
ajlm-760	53	11	used	use	VERB
ajlm-760	53	12	pfge	pfge	NOUN
ajlm-760	53	13	analysis	analysis	NOUN
ajlm-760	53	14	to	to	PART
ajlm-760	53	15	investigate	investigate	VERB
ajlm-760	53	16	an	an	DET
ajlm-760	53	17	outbreak	outbreak	NOUN
ajlm-760	53	18	of	of	ADP
ajlm-760	53	19	salmonella	salmonella	NOUN
ajlm-760	53	20	typhi	typhi	ADV
ajlm-760	53	21	associated	associate	VERB
ajlm-760	53	22	with	with	ADP
ajlm-760	53	23	a	a	DET
ajlm-760	53	24	restaurant	restaurant	NOUN
ajlm-760	53	25	in	in	ADP
ajlm-760	53	26	south	south	PROPN
ajlm-760	53	27	africa	africa	PROPN
ajlm-760	53	28	;	;	PUNCT
ajlm-760	53	29	the	the	DET
ajlm-760	53	30	source	source	NOUN
ajlm-760	53	31	of	of	ADP
ajlm-760	53	32	the	the	DET
ajlm-760	53	33	infecting	infect	VERB
ajlm-760	53	34	strain	strain	NOUN
ajlm-760	53	35	was	be	AUX
ajlm-760	53	36	a	a	DET
ajlm-760	53	37	restaurant	restaurant	NOUN
ajlm-760	53	38	worker	worker	NOUN
ajlm-760	53	39	who	who	PRON
ajlm-760	53	40	was	be	AUX
ajlm-760	53	41	tracked	track	VERB
ajlm-760	53	42	to	to	ADP
ajlm-760	53	43	australia	australia	PROPN
ajlm-760	53	44	where	where	SCONJ
ajlm-760	53	45	a	a	DET
ajlm-760	53	46	salmonella	salmonella	NOUN
ajlm-760	53	47	typhi	typhi	NOUN
ajlm-760	53	48	isolate	isolate	NOUN
ajlm-760	53	49	was	be	AUX
ajlm-760	53	50	recovered	recover	VERB
ajlm-760	53	51	from	from	ADP
ajlm-760	53	52	the	the	DET
ajlm-760	53	53	individual	individual	NOUN
ajlm-760	53	54	;	;	PUNCT
ajlm-760	53	55	the	the	DET
ajlm-760	53	56	isolate	isolate	NOUN
ajlm-760	53	57	shared	share	VERB
ajlm-760	53	58	an	an	DET
ajlm-760	53	59	indistinguishable	indistinguishable	ADJ
ajlm-760	53	60	pfge	pfge	NOUN
ajlm-760	53	61	pattern	pattern	NOUN
ajlm-760	53	62	as	as	SCONJ
ajlm-760	53	63	compared	compare	VERB
ajlm-760	53	64	to	to	ADP
ajlm-760	53	65	the	the	DET
ajlm-760	53	66	pattern	pattern	NOUN
ajlm-760	53	67	of	of	ADP
ajlm-760	53	68	the	the	DET
ajlm-760	53	69	outbreak	outbreak	NOUN
ajlm-760	53	70	strain	strain	VERB
ajlm-760	53	71	.	.	PUNCT
ajlm-760	54	1	using	use	VERB
ajlm-760	54	2	the	the	DET
ajlm-760	54	3	same	same	ADJ
ajlm-760	54	4	scenario	scenario	NOUN
ajlm-760	54	5	as	as	SCONJ
ajlm-760	54	6	described	describe	VERB
ajlm-760	54	7	above	above	ADV
ajlm-760	54	8	(	(	PUNCT
ajlm-760	54	9	comparison	comparison	NOUN
ajlm-760	54	10	of	of	ADP
ajlm-760	54	11	pfge	pfge	NOUN
ajlm-760	54	12	patterns	pattern	NOUN
ajlm-760	54	13	within	within	ADP
ajlm-760	54	14	the	the	DET
ajlm-760	54	15	pulsenet	pulsenet	NOUN
ajlm-760	54	16	international	international	ADJ
ajlm-760	54	17	laboratory	laboratory	NOUN
ajlm-760	54	18	network	network	NOUN
ajlm-760	54	19	)	)	PUNCT
ajlm-760	54	20	,	,	PUNCT
ajlm-760	54	21	keddy	keddy	NOUN
ajlm-760	54	22	and	and	CCONJ
ajlm-760	54	23	coworkers33	coworkers33	NOUN
ajlm-760	54	24	investigated	investigate	VERB
ajlm-760	54	25	a	a	DET
ajlm-760	54	26	mdr	mdr	NOUN
ajlm-760	54	27	(	(	PUNCT
ajlm-760	54	28	including	include	VERB
ajlm-760	54	29	resistance	resistance	NOUN
ajlm-760	54	30	to	to	ADP
ajlm-760	54	31	fluoroquinolones	fluoroquinolone	NOUN
ajlm-760	54	32	)	)	PUNCT
ajlm-760	54	33	salmonella	salmonella	PROPN
ajlm-760	54	34	typhi	typhi	NOUN
ajlm-760	54	35	isolate	isolate	NOUN
ajlm-760	54	36	recovered	recover	VERB
ajlm-760	54	37	from	from	ADP
ajlm-760	54	38	a	a	DET
ajlm-760	54	39	south	south	ADJ
ajlm-760	54	40	african	african	ADJ
ajlm-760	54	41	patient	patient	NOUN
ajlm-760	54	42	who	who	PRON
ajlm-760	54	43	had	have	AUX
ajlm-760	54	44	interacted	interact	VERB
ajlm-760	54	45	with	with	ADP
ajlm-760	54	46	a	a	DET
ajlm-760	54	47	person	person	NOUN
ajlm-760	54	48	who	who	PRON
ajlm-760	54	49	had	have	AUX
ajlm-760	54	50	recently	recently	ADV
ajlm-760	54	51	travelled	travel	VERB
ajlm-760	54	52	to	to	ADP
ajlm-760	54	53	bangladesh	bangladesh	NOUN
ajlm-760	54	54	;	;	PUNCT
ajlm-760	54	55	the	the	DET
ajlm-760	54	56	pfge	pfge	NOUN
ajlm-760	54	57	pattern	pattern	NOUN
ajlm-760	54	58	of	of	ADP
ajlm-760	54	59	the	the	DET
ajlm-760	54	60	isolate	isolate	NOUN
ajlm-760	54	61	had	have	AUX
ajlm-760	54	62	never	never	ADV
ajlm-760	54	63	previously	previously	ADV
ajlm-760	54	64	been	be	AUX
ajlm-760	54	65	seen	see	VERB
ajlm-760	54	66	within	within	ADP
ajlm-760	54	67	the	the	DET
ajlm-760	54	68	south	south	ADJ
ajlm-760	54	69	african	african	ADJ
ajlm-760	54	70	pfge	pfge	NOUN
ajlm-760	54	71	database	database	NOUN
ajlm-760	54	72	,	,	PUNCT
ajlm-760	54	73	but	but	CCONJ
ajlm-760	54	74	the	the	DET
ajlm-760	54	75	pfge	pfge	NOUN
ajlm-760	54	76	pattern	pattern	NOUN
ajlm-760	54	77	was	be	AUX
ajlm-760	54	78	typical	typical	ADJ
ajlm-760	54	79	of	of	ADP
ajlm-760	54	80	that	that	PRON
ajlm-760	54	81	seen	see	VERB
ajlm-760	54	82	of	of	ADP
ajlm-760	54	83	isolates	isolate	NOUN
ajlm-760	54	84	from	from	ADP
ajlm-760	54	85	the	the	DET
ajlm-760	54	86	indian	indian	PROPN
ajlm-760	54	87	subcontinent	subcontinent	PROPN
ajlm-760	54	88	,	,	PUNCT
ajlm-760	54	89	evidence	evidence	NOUN
ajlm-760	54	90	to	to	PART
ajlm-760	54	91	support	support	VERB
ajlm-760	54	92	the	the	DET
ajlm-760	54	93	view	view	NOUN
ajlm-760	54	94	that	that	SCONJ
ajlm-760	54	95	the	the	DET
ajlm-760	54	96	isolate	isolate	NOUN
ajlm-760	54	97	originated	originate	VERB
ajlm-760	54	98	in	in	ADP
ajlm-760	54	99	bangladesh	bangladesh	NOUN
ajlm-760	54	100	.	.	PUNCT
ajlm-760	55	1	global	global	ADJ
ajlm-760	55	2	tracking	tracking	NOUN
ajlm-760	55	3	of	of	ADP
ajlm-760	55	4	salmonella	salmonella	NOUN
ajlm-760	55	5	typhi	typhi	VERB
ajlm-760	55	6	through	through	ADP
ajlm-760	55	7	inter	inter	ADJ
ajlm-760	55	8	-	-	ADJ
ajlm-760	55	9	laboratory	laboratory	ADJ
ajlm-760	55	10	comparison	comparison	NOUN
ajlm-760	55	11	of	of	ADP
ajlm-760	55	12	molecular	molecular	ADJ
ajlm-760	55	13	subtyping	subtype	VERB
ajlm-760	55	14	data	datum	NOUN
ajlm-760	55	15	is	be	AUX
ajlm-760	55	16	particularly	particularly	ADV
ajlm-760	55	17	important	important	ADJ
ajlm-760	55	18	in	in	ADP
ajlm-760	55	19	establishing	establish	VERB
ajlm-760	55	20	the	the	DET
ajlm-760	55	21	source	source	NOUN
ajlm-760	55	22	(	(	PUNCT
ajlm-760	55	23	and	and	CCONJ
ajlm-760	55	24	spread	spread	VERB
ajlm-760	55	25	)	)	PUNCT
ajlm-760	55	26	of	of	ADP
ajlm-760	55	27	mdr	mdr	PROPN
ajlm-760	55	28	(	(	PUNCT
ajlm-760	55	29	and	and	CCONJ
ajlm-760	55	30	virulent	virulent	NOUN
ajlm-760	55	31	)	)	PUNCT
ajlm-760	55	32	strains	strain	NOUN
ajlm-760	55	33	of	of	ADP
ajlm-760	55	34	salmonella	salmonella	NOUN
ajlm-760	55	35	typhi	typhi	VERB
ajlm-760	55	36	.	.	PUNCT
ajlm-760	56	1	an	an	DET
ajlm-760	56	2	example	example	NOUN
ajlm-760	56	3	of	of	ADP
ajlm-760	56	4	such	such	DET
ajlm-760	56	5	a	a	DET
ajlm-760	56	6	strain	strain	NOUN
ajlm-760	56	7	is	be	AUX
ajlm-760	56	8	salmonella	salmonella	NOUN
ajlm-760	56	9	typhi	typhi	PROPN
ajlm-760	56	10	h58	h58	PROPN
ajlm-760	56	11	,	,	PUNCT
ajlm-760	56	12	a	a	DET
ajlm-760	56	13	highly	highly	ADV
ajlm-760	56	14	clonal	clonal	ADJ
ajlm-760	56	15	mdr	mdr	PROPN
ajlm-760	56	16	haplotype	haplotype	NOUN
ajlm-760	56	17	of	of	ADP
ajlm-760	56	18	salmonella	salmonella	NOUN
ajlm-760	56	19	introduced	introduce	VERB
ajlm-760	56	20	from	from	ADP
ajlm-760	56	21	asia	asia	PROPN
ajlm-760	56	22	into	into	ADP
ajlm-760	56	23	africa	africa	PROPN
ajlm-760	56	24	and	and	CCONJ
ajlm-760	56	25	now	now	ADV
ajlm-760	56	26	currently	currently	ADV
ajlm-760	56	27	spreading	spread	VERB
ajlm-760	56	28	through	through	ADP
ajlm-760	56	29	many	many	ADJ
ajlm-760	56	30	sub	sub	ADJ
ajlm-760	56	31	-	-	ADJ
ajlm-760	56	32	saharan	saharan	ADJ
ajlm-760	56	33	african	african	ADJ
ajlm-760	56	34	countries.5	countries.5	NOUN
ajlm-760	56	35	further	further	ADJ
ajlm-760	56	36	investigation	investigation	NOUN
ajlm-760	56	37	of	of	ADP
ajlm-760	56	38	salmonella	salmonella	NOUN
ajlm-760	56	39	typhi	typhi	VERB
ajlm-760	56	40	outbreaks	outbreak	NOUN
ajlm-760	56	41	using	use	VERB
ajlm-760	56	42	pfge	pfge	NOUN
ajlm-760	56	43	analysis	analysis	NOUN
ajlm-760	56	44	have	have	AUX
ajlm-760	56	45	been	be	AUX
ajlm-760	56	46	reported	report	VERB
ajlm-760	56	47	from	from	ADP
ajlm-760	56	48	the	the	DET
ajlm-760	56	49	malawi	malawi	PROPN
ajlm-760	56	50	-	-	PUNCT
ajlm-760	56	51	mozambique	mozambique	PROPN
ajlm-760	56	52	border,34	border,34	PROPN
ajlm-760	56	53	in	in	ADP
ajlm-760	56	54	uganda35,36	uganda35,36	PROPN
ajlm-760	56	55	and	and	CCONJ
ajlm-760	56	56	in	in	ADP
ajlm-760	56	57	south	south	PROPN
ajlm-760	56	58	africa.37	africa.37	PROPN
ajlm-760	56	59	in	in	ADP
ajlm-760	56	60	uganda	uganda	PROPN
ajlm-760	56	61	,	,	PUNCT
ajlm-760	56	62	walters	walters	PROPN
ajlm-760	56	63	and	and	CCONJ
ajlm-760	56	64	coworkers36	coworkers36	NOUN
ajlm-760	56	65	investigated	investigate	VERB
ajlm-760	56	66	a	a	DET
ajlm-760	56	67	prolonged	prolonged	ADJ
ajlm-760	56	68	waterborne	waterborne	ADJ
ajlm-760	56	69	outbreak	outbreak	NOUN
ajlm-760	56	70	in	in	ADP
ajlm-760	56	71	two	two	NUM
ajlm-760	56	72	neighbouring	neighbouring	ADJ
ajlm-760	56	73	districts	district	NOUN
ajlm-760	56	74	;	;	PUNCT
ajlm-760	56	75	they	they	PRON
ajlm-760	56	76	used	use	VERB
ajlm-760	56	77	pfge	pfge	NOUN
ajlm-760	56	78	analysis	analysis	NOUN
ajlm-760	56	79	to	to	PART
ajlm-760	56	80	document	document	VERB
ajlm-760	56	81	the	the	DET
ajlm-760	56	82	clonal	clonal	ADJ
ajlm-760	56	83	spread	spread	NOUN
ajlm-760	56	84	of	of	ADP
ajlm-760	56	85	mdr	mdr	PROPN
ajlm-760	56	86	salmonella	salmonella	PROPN
ajlm-760	56	87	typhi	typhi	VERB
ajlm-760	56	88	from	from	ADP
ajlm-760	56	89	the	the	DET
ajlm-760	56	90	kasese	kasese	ADJ
ajlm-760	56	91	district	district	NOUN
ajlm-760	56	92	to	to	ADP
ajlm-760	56	93	the	the	DET
ajlm-760	56	94	bundibugyo	bundibugyo	NOUN
ajlm-760	56	95	district	district	NOUN
ajlm-760	56	96	.	.	PUNCT
ajlm-760	57	1	analysis	analysis	NOUN
ajlm-760	57	2	of	of	ADP
ajlm-760	57	3	selected	select	VERB
ajlm-760	57	4	isolates	isolate	NOUN
ajlm-760	57	5	showed	show	VERB
ajlm-760	57	6	mdr	mdr	PROPN
ajlm-760	57	7	to	to	ADP
ajlm-760	57	8	ampicillin	ampicillin	PROPN
ajlm-760	57	9	,	,	PUNCT
ajlm-760	57	10	chloramphenicol	chloramphenicol	NOUN
ajlm-760	57	11	,	,	PUNCT
ajlm-760	57	12	cotrimoxazole	cotrimoxazole	NOUN
ajlm-760	57	13	,	,	PUNCT
ajlm-760	57	14	streptomycin	streptomycin	PROPN
ajlm-760	57	15	and	and	CCONJ
ajlm-760	57	16	tetracycline	tetracycline	NOUN
ajlm-760	57	17	.	.	PUNCT
ajlm-760	58	1	in	in	ADP
ajlm-760	58	2	south	south	PROPN
ajlm-760	58	3	africa	africa	PROPN
ajlm-760	58	4	,	,	PUNCT
ajlm-760	58	5	keddy	keddy	NOUN
ajlm-760	58	6	and	and	CCONJ
ajlm-760	58	7	coworkers37	coworkers37	NOUN
ajlm-760	58	8	investigated	investigate	VERB
ajlm-760	58	9	a	a	DET
ajlm-760	58	10	waterborne	waterborne	ADJ
ajlm-760	58	11	outbreak	outbreak	NOUN
ajlm-760	58	12	in	in	ADP
ajlm-760	58	13	the	the	DET
ajlm-760	58	14	delmas	delmas	PROPN
ajlm-760	58	15	area	area	NOUN
ajlm-760	58	16	of	of	ADP
ajlm-760	58	17	south	south	PROPN
ajlm-760	58	18	africa	africa	PROPN
ajlm-760	58	19	in	in	ADP
ajlm-760	58	20	2005	2005	NUM
ajlm-760	58	21	;	;	PUNCT
ajlm-760	58	22	they	they	PRON
ajlm-760	58	23	used	use	VERB
ajlm-760	58	24	pfge	pfge	NOUN
ajlm-760	58	25	analysis	analysis	NOUN
ajlm-760	58	26	and	and	CCONJ
ajlm-760	58	27	mlva	mlva	NOUN
ajlm-760	58	28	to	to	PART
ajlm-760	58	29	show	show	VERB
ajlm-760	58	30	high	high	ADJ
ajlm-760	58	31	relatedness	relatedness	NOUN
ajlm-760	58	32	among	among	ADP
ajlm-760	58	33	outbreak	outbreak	NOUN
ajlm-760	58	34	isolates	isolate	NOUN
ajlm-760	58	35	.	.	PUNCT
ajlm-760	59	1	these	these	DET
ajlm-760	59	2	outbreak	outbreak	NOUN
ajlm-760	59	3	isolates	isolate	NOUN
ajlm-760	59	4	from	from	ADP
ajlm-760	59	5	2005	2005	NUM
ajlm-760	59	6	were	be	AUX
ajlm-760	59	7	also	also	ADV
ajlm-760	59	8	shown	show	VERB
ajlm-760	59	9	to	to	PART
ajlm-760	59	10	be	be	AUX
ajlm-760	59	11	highly	highly	ADV
ajlm-760	59	12	related	relate	VERB
ajlm-760	59	13	to	to	ADP
ajlm-760	59	14	isolates	isolate	NOUN
ajlm-760	59	15	associated	associate	VERB
ajlm-760	59	16	with	with	ADP
ajlm-760	59	17	a	a	DET
ajlm-760	59	18	similar	similar	ADJ
ajlm-760	59	19	waterborne	waterborne	ADJ
ajlm-760	59	20	outbreak	outbreak	NOUN
ajlm-760	59	21	in	in	ADP
ajlm-760	59	22	the	the	DET
ajlm-760	59	23	same	same	ADJ
ajlm-760	59	24	area	area	NOUN
ajlm-760	59	25	in	in	ADP
ajlm-760	59	26	1993	1993	NUM
ajlm-760	59	27	.	.	PUNCT
ajlm-760	60	1	besides	besides	SCONJ
ajlm-760	60	2	pfge	pfge	NOUN
ajlm-760	60	3	analysis	analysis	NOUN
ajlm-760	60	4	,	,	PUNCT
ajlm-760	60	5	mlva	mlva	NOUN
ajlm-760	60	6	is	be	AUX
ajlm-760	60	7	often	often	ADV
ajlm-760	60	8	described	describe	VERB
ajlm-760	60	9	as	as	ADP
ajlm-760	60	10	a	a	DET
ajlm-760	60	11	useful	useful	ADJ
ajlm-760	60	12	molecular	molecular	ADJ
ajlm-760	60	13	subtyping	subtyping	NOUN
ajlm-760	60	14	method	method	NOUN
ajlm-760	60	15	for	for	ADP
ajlm-760	60	16	discrimination	discrimination	NOUN
ajlm-760	60	17	of	of	ADP
ajlm-760	60	18	strains	strain	NOUN
ajlm-760	60	19	belonging	belong	VERB
ajlm-760	60	20	to	to	ADP
ajlm-760	60	21	the	the	DET
ajlm-760	60	22	salmonella	salmonella	NOUN
ajlm-760	60	23	species	specie	NOUN
ajlm-760	60	24	.	.	PUNCT
ajlm-760	61	1	tau	tau	PROPN
ajlm-760	61	2	and	and	CCONJ
ajlm-760	61	3	coworkers38	coworkers38	NOUN
ajlm-760	61	4	described	describe	VERB
ajlm-760	61	5	the	the	DET
ajlm-760	61	6	development	development	NOUN
ajlm-760	61	7	and	and	CCONJ
ajlm-760	61	8	evaluation	evaluation	NOUN
ajlm-760	61	9	of	of	ADP
ajlm-760	61	10	a	a	DET
ajlm-760	61	11	mlva	mlva	NOUN
ajlm-760	61	12	assay	assay	NOUN
ajlm-760	61	13	for	for	ADP
ajlm-760	61	14	molecular	molecular	ADJ
ajlm-760	61	15	subtyping	subtyping	NOUN
ajlm-760	61	16	of	of	ADP
ajlm-760	61	17	salmonella	salmonella	NOUN
ajlm-760	61	18	typhi	typhi	VERB
ajlm-760	61	19	in	in	ADP
ajlm-760	61	20	sub	sub	ADJ
ajlm-760	61	21	-	-	ADJ
ajlm-760	61	22	saharan	saharan	ADJ
ajlm-760	61	23	africa	africa	PROPN
ajlm-760	61	24	.	.	PUNCT
ajlm-760	62	1	they	they	PRON
ajlm-760	62	2	evaluated	evaluate	VERB
ajlm-760	62	3	the	the	DET
ajlm-760	62	4	mlva	mlva	PROPN
ajlm-760	62	5	assay	assay	VERB
ajlm-760	62	6	on	on	ADP
ajlm-760	62	7	a	a	DET
ajlm-760	62	8	panel	panel	NOUN
ajlm-760	62	9	of	of	ADP
ajlm-760	62	10	african	african	ADJ
ajlm-760	62	11	isolates	isolate	NOUN
ajlm-760	62	12	and	and	CCONJ
ajlm-760	62	13	showed	show	VERB
ajlm-760	62	14	that	that	SCONJ
ajlm-760	62	15	it	it	PRON
ajlm-760	62	16	had	have	VERB
ajlm-760	62	17	higher	high	ADJ
ajlm-760	62	18	discriminatory	discriminatory	ADJ
ajlm-760	62	19	power	power	NOUN
ajlm-760	62	20	as	as	SCONJ
ajlm-760	62	21	compared	compare	VERB
ajlm-760	62	22	to	to	ADP
ajlm-760	62	23	pfge	pfge	VERB
ajlm-760	62	24	;	;	PUNCT
ajlm-760	62	25	the	the	DET
ajlm-760	62	26	mlva	mlva	PROPN
ajlm-760	62	27	assay	assay	NOUN
ajlm-760	62	28	was	be	AUX
ajlm-760	62	29	able	able	ADJ
ajlm-760	62	30	to	to	PART
ajlm-760	62	31	differentiate	differentiate	VERB
ajlm-760	62	32	outbreak	outbreak	NOUN
ajlm-760	62	33	isolates	isolate	NOUN
ajlm-760	62	34	from	from	ADP
ajlm-760	62	35	sporadic	sporadic	ADJ
ajlm-760	62	36	isolates	isolate	NOUN
ajlm-760	62	37	.	.	PUNCT
ajlm-760	63	1	whole	whole	ADJ
ajlm-760	63	2	-	-	PUNCT
ajlm-760	63	3	genome	genome	NOUN
ajlm-760	63	4	sequencing	sequencing	NOUN
ajlm-760	63	5	–	–	PUNCT
ajlm-760	63	6	single	single	ADJ
ajlm-760	63	7	nucleotide	nucleotide	NOUN
ajlm-760	63	8	polymor	polymor	NOUN
ajlm-760	63	9	-	-	PUNCT
ajlm-760	63	10	phisms	phism	NOUN
ajlm-760	63	11	analysis	analysis	NOUN
ajlm-760	63	12	has	have	AUX
ajlm-760	63	13	been	be	AUX
ajlm-760	63	14	increasingly	increasingly	ADV
ajlm-760	63	15	used	use	VERB
ajlm-760	63	16	to	to	PART
ajlm-760	63	17	investigate	investigate	VERB
ajlm-760	63	18	the	the	DET
ajlm-760	63	19	molecular	molecular	ADJ
ajlm-760	63	20	epidemiology	epidemiology	NOUN
ajlm-760	63	21	of	of	ADP
ajlm-760	63	22	salmonella	salmonella	NOUN
ajlm-760	63	23	typhi	typhi	VERB
ajlm-760	63	24	in	in	ADP
ajlm-760	63	25	sub	sub	ADJ
ajlm-760	63	26	-	-	ADJ
ajlm-760	63	27	saharan	saharan	ADJ
ajlm-760	63	28	africa	africa	PROPN
ajlm-760	63	29	;	;	PUNCT
ajlm-760	63	30	a	a	DET
ajlm-760	63	31	common	common	ADJ
ajlm-760	63	32	theme	theme	NOUN
ajlm-760	63	33	has	have	AUX
ajlm-760	63	34	been	be	AUX
ajlm-760	63	35	the	the	DET
ajlm-760	63	36	description	description	NOUN
ajlm-760	63	37	of	of	ADP
ajlm-760	63	38	the	the	DET
ajlm-760	63	39	mdr	mdr	PROPN
ajlm-760	63	40	salmonella	salmonella	PROPN
ajlm-760	63	41	typhi	typhi	PROPN
ajlm-760	63	42	h58	h58	PROPN
ajlm-760	63	43	strain.5,39	strain.5,39	PROPN
ajlm-760	63	44	wong	wong	PROPN
ajlm-760	63	45	and	and	CCONJ
ajlm-760	63	46	coworkers5	coworkers5	PROPN
ajlm-760	63	47	used	use	VERB
ajlm-760	63	48	wgs	wgs	NOUN
ajlm-760	63	49	-	-	PUNCT
ajlm-760	63	50	snp	snp	NOUN
ajlm-760	63	51	analysis	analysis	NOUN
ajlm-760	63	52	to	to	PART
ajlm-760	63	53	investigate	investigate	VERB
ajlm-760	63	54	1832	1832	NUM
ajlm-760	63	55	salmonella	salmonella	NOUN
ajlm-760	63	56	typhi	typhi	VERB
ajlm-760	63	57	isolates	isolate	NOUN
ajlm-760	63	58	from	from	ADP
ajlm-760	63	59	63	63	NUM
ajlm-760	63	60	global	global	ADJ
ajlm-760	63	61	countries	country	NOUN
ajlm-760	63	62	,	,	PUNCT
ajlm-760	63	63	to	to	PART
ajlm-760	63	64	identify	identify	VERB
ajlm-760	63	65	one	one	NUM
ajlm-760	63	66	major	major	ADJ
ajlm-760	63	67	mdr	mdr	NOUN
ajlm-760	63	68	lineage	lineage	NOUN
ajlm-760	63	69	(	(	PUNCT
ajlm-760	63	70	named	name	VERB
ajlm-760	63	71	h58	h58	NOUN
ajlm-760	63	72	)	)	PUNCT
ajlm-760	63	73	that	that	PRON
ajlm-760	63	74	has	have	AUX
ajlm-760	63	75	arisen	arise	VERB
ajlm-760	63	76	and	and	CCONJ
ajlm-760	63	77	spread	spread	VERB
ajlm-760	63	78	across	across	ADP
ajlm-760	63	79	asia	asia	PROPN
ajlm-760	63	80	and	and	CCONJ
ajlm-760	63	81	africa	africa	PROPN
ajlm-760	63	82	over	over	ADP
ajlm-760	63	83	the	the	DET
ajlm-760	63	84	past	past	ADJ
ajlm-760	63	85	30	30	NUM
ajlm-760	63	86	years	year	NOUN
ajlm-760	63	87	.	.	PUNCT
ajlm-760	64	1	multiple	multiple	ADJ
ajlm-760	64	2	h58	h58	PROPN
ajlm-760	64	3	transfers	transfer	NOUN
ajlm-760	64	4	have	have	AUX
ajlm-760	64	5	occurred	occur	VERB
ajlm-760	64	6	,	,	PUNCT
ajlm-760	64	7	moving	move	VERB
ajlm-760	64	8	from	from	ADP
ajlm-760	64	9	asia	asia	PROPN
ajlm-760	64	10	into	into	ADP
ajlm-760	64	11	africa	africa	PROPN
ajlm-760	64	12	.	.	PUNCT
ajlm-760	65	1	an	an	DET
ajlm-760	65	2	mdr	mdr	PROPN
ajlm-760	65	3	h58	h58	PROPN
ajlm-760	65	4	epidemic	epidemic	NOUN
ajlm-760	65	5	has	have	AUX
ajlm-760	65	6	been	be	AUX
ajlm-760	65	7	described	describe	VERB
ajlm-760	65	8	in	in	ADP
ajlm-760	65	9	sub	sub	ADJ
ajlm-760	65	10	-	-	ADJ
ajlm-760	65	11	saharan	saharan	ADJ
ajlm-760	65	12	africa	africa	PROPN
ajlm-760	65	13	where	where	SCONJ
ajlm-760	65	14	h58	h58	NOUN
ajlm-760	65	15	lineages	lineage	NOUN
ajlm-760	65	16	are	be	AUX
ajlm-760	65	17	displacing	displace	VERB
ajlm-760	65	18	antimicrobial	antimicrobial	ADJ
ajlm-760	65	19	-	-	PUNCT
ajlm-760	65	20	susceptible	susceptible	ADJ
ajlm-760	65	21	strains	strain	NOUN
ajlm-760	65	22	.	.	PUNCT
ajlm-760	66	1	mdr	mdr	PROPN
ajlm-760	66	2	h58	h58	PROPN
ajlm-760	66	3	lineages	lineage	NOUN
ajlm-760	66	4	are	be	AUX
ajlm-760	66	5	associated	associate	VERB
ajlm-760	66	6	with	with	ADP
ajlm-760	66	7	resistance	resistance	NOUN
ajlm-760	66	8	to	to	ADP
ajlm-760	66	9	ampicillin	ampicillin	PROPN
ajlm-760	66	10	,	,	PUNCT
ajlm-760	66	11	trimethoprim	trimethoprim	ADJ
ajlm-760	66	12	,	,	PUNCT
ajlm-760	66	13	sulphonamides	sulphonamide	NOUN
ajlm-760	66	14	,	,	PUNCT
ajlm-760	66	15	chloramphenicol	chloramphenicol	NOUN
ajlm-760	66	16	,	,	PUNCT
ajlm-760	66	17	streptomycin	streptomycin	PROPN
ajlm-760	66	18	and	and	CCONJ
ajlm-760	66	19	tetracycline	tetracycline	NOUN
ajlm-760	66	20	,	,	PUNCT
ajlm-760	66	21	including	include	VERB
ajlm-760	66	22	reduced	reduce	VERB
ajlm-760	66	23	susceptibility	susceptibility	NOUN
ajlm-760	66	24	to	to	PART
ajlm-760	66	25	fluoroquinolones.5,39	fluoroquinolones.5,39	VERB
ajlm-760	66	26	this	this	DET
ajlm-760	66	27	mdr	mdr	PROPN
ajlm-760	66	28	h58	h58	PROPN
ajlm-760	66	29	lineage	lineage	PROPN
ajlm-760	66	30	has	have	AUX
ajlm-760	66	31	now	now	ADV
ajlm-760	66	32	been	be	AUX
ajlm-760	66	33	described	describe	VERB
ajlm-760	66	34	in	in	ADP
ajlm-760	66	35	the	the	DET
ajlm-760	66	36	eastern	eastern	ADJ
ajlm-760	66	37	and	and	CCONJ
ajlm-760	66	38	southern	southern	ADJ
ajlm-760	66	39	regions	region	NOUN
ajlm-760	66	40	of	of	ADP
ajlm-760	66	41	sub	sub	ADJ
ajlm-760	66	42	-	-	ADJ
ajlm-760	66	43	saharan	saharan	ADJ
ajlm-760	66	44	africa	africa	PROPN
ajlm-760	66	45	including	include	VERB
ajlm-760	66	46	kenya	kenya	PROPN
ajlm-760	66	47	,	,	PUNCT
ajlm-760	66	48	tanzania	tanzania	PROPN
ajlm-760	66	49	,	,	PUNCT
ajlm-760	66	50	malawi	malawi	PROPN
ajlm-760	66	51	and	and	CCONJ
ajlm-760	66	52	south	south	PROPN
ajlm-760	66	53	africa.5,38,39,40	africa.5,38,39,40	PROPN
ajlm-760	66	54	hendriksen	hendriksen	PROPN
ajlm-760	66	55	and	and	CCONJ
ajlm-760	66	56	coworkers41	coworkers41	NOUN
ajlm-760	66	57	also	also	ADV
ajlm-760	66	58	used	use	VERB
ajlm-760	66	59	wgs	wgs	NOUN
ajlm-760	66	60	-	-	PUNCT
ajlm-760	66	61	snp	snp	NOUN
ajlm-760	66	62	analysis	analysis	NOUN
ajlm-760	66	63	to	to	PART
ajlm-760	66	64	investigate	investigate	VERB
ajlm-760	66	65	an	an	DET
ajlm-760	66	66	outbreak	outbreak	NOUN
ajlm-760	66	67	of	of	ADP
ajlm-760	66	68	salmonella	salmonella	NOUN
ajlm-760	66	69	typhi	typhi	VERB
ajlm-760	66	70	in	in	ADP
ajlm-760	66	71	zambia	zambia	PROPN
ajlm-760	66	72	;	;	PUNCT
ajlm-760	66	73	most	most	ADJ
ajlm-760	66	74	isolates	isolate	NOUN
ajlm-760	66	75	showed	show	VERB
ajlm-760	66	76	resistance	resistance	NOUN
ajlm-760	66	77	to	to	ADP
ajlm-760	66	78	ampicillin	ampicillin	PROPN
ajlm-760	66	79	,	,	PUNCT
ajlm-760	66	80	chloramphenicol	chloramphenicol	NOUN
ajlm-760	66	81	,	,	PUNCT
ajlm-760	66	82	streptomycin	streptomycin	PROPN
ajlm-760	66	83	,	,	PUNCT
ajlm-760	66	84	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	66	85	and	and	CCONJ
ajlm-760	66	86	trimethoprim	trimethoprim	NOUN
ajlm-760	66	87	,	,	PUNCT
ajlm-760	66	88	while	while	SCONJ
ajlm-760	66	89	some	some	DET
ajlm-760	66	90	isolates	isolate	NOUN
ajlm-760	66	91	also	also	ADV
ajlm-760	66	92	had	have	AUX
ajlm-760	66	93	reduced	reduce	VERB
ajlm-760	66	94	susceptibility	susceptibility	NOUN
ajlm-760	66	95	to	to	ADP
ajlm-760	66	96	fluoroquinolones	fluoroquinolone	NOUN
ajlm-760	66	97	.	.	PUNCT
ajlm-760	67	1	isolates	isolate	NOUN
ajlm-760	67	2	belonged	belong	VERB
ajlm-760	67	3	to	to	ADP
ajlm-760	67	4	a	a	DET
ajlm-760	67	5	new	new	ADJ
ajlm-760	67	6	variant	variant	NOUN
ajlm-760	67	7	of	of	ADP
ajlm-760	67	8	the	the	DET
ajlm-760	67	9	h58	h58	PROPN
ajlm-760	67	10	haplotype	haplotype	NOUN
ajlm-760	67	11	,	,	PUNCT
ajlm-760	67	12	namely	namely	ADV
ajlm-760	67	13	haplotype	haplotype	NOUN
ajlm-760	67	14	h58b	h58b	NOUN
ajlm-760	67	15	.	.	PUNCT
ajlm-760	68	1	interestingly	interestingly	ADV
ajlm-760	68	2	,	,	PUNCT
ajlm-760	68	3	investigation	investigation	NOUN
ajlm-760	68	4	of	of	ADP
ajlm-760	68	5	mdr	mdr	PROPN
ajlm-760	68	6	salmonella	salmonella	PROPN
ajlm-760	68	7	typhi	typhi	VERB
ajlm-760	68	8	from	from	ADP
ajlm-760	68	9	nigeria	nigeria	PROPN
ajlm-760	68	10	-western	-western	PROPN
ajlm-760	68	11	africa	africa	PROPN
ajlm-760	68	12	,	,	PUNCT
ajlm-760	68	13	using	use	VERB
ajlm-760	68	14	wgs	wgs	NOUN
ajlm-760	68	15	-	-	PUNCT
ajlm-760	68	16	snp	snp	NOUN
ajlm-760	68	17	analysis	analysis	NOUN
ajlm-760	68	18	,	,	PUNCT
ajlm-760	68	19	has	have	AUX
ajlm-760	68	20	not	not	PART
ajlm-760	68	21	detected	detect	VERB
ajlm-760	68	22	the	the	DET
ajlm-760	68	23	h58	h58	PROPN
ajlm-760	68	24	lineage	lineage	NOUN
ajlm-760	68	25	;	;	PUNCT
ajlm-760	68	26	instead	instead	ADV
ajlm-760	68	27	the	the	DET
ajlm-760	68	28	majority	majority	NOUN
ajlm-760	68	29	of	of	ADP
ajlm-760	68	30	isolates	isolate	NOUN
ajlm-760	68	31	belonged	belong	VERB
ajlm-760	68	32	to	to	ADP
ajlm-760	68	33	a	a	DET
ajlm-760	68	34	different	different	ADJ
ajlm-760	68	35	lineage	lineage	NOUN
ajlm-760	68	36	-h56	-h56	NOUN
ajlm-760	68	37	lineage	lineage	NOUN
ajlm-760	68	38	,	,	PUNCT
ajlm-760	68	39	which	which	PRON
ajlm-760	68	40	carries	carry	VERB
ajlm-760	68	41	genes	gene	NOUN
ajlm-760	68	42	coding	code	VERB
ajlm-760	68	43	for	for	ADP
ajlm-760	68	44	resistance	resistance	NOUN
ajlm-760	68	45	to	to	ADP
ajlm-760	68	46	ampicillin	ampicillin	PROPN
ajlm-760	68	47	,	,	PUNCT
ajlm-760	68	48	tetracycline	tetracycline	NOUN
ajlm-760	68	49	,	,	PUNCT
ajlm-760	68	50	chloramphenicol	chloramphenicol	NOUN
ajlm-760	68	51	and	and	CCONJ
ajlm-760	68	52	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	68	53	(	(	PUNCT
ajlm-760	68	54	blatem1	blatem1	PROPN
ajlm-760	68	55	,	,	PUNCT
ajlm-760	68	56	cata1	cata1	PROPN
ajlm-760	68	57	,	,	PUNCT
ajlm-760	68	58	tetb	tetb	ADV
ajlm-760	68	59	,	,	PUNCT
ajlm-760	68	60	dfra1	dfra1	NOUN
ajlm-760	68	61	,	,	PUNCT
ajlm-760	68	62	sul1	sul1	PROPN
ajlm-760	68	63	)	)	PUNCT
ajlm-760	68	64	.	.	PUNCT
ajlm-760	69	1	this	this	DET
ajlm-760	69	2	h56	h56	PROPN
ajlm-760	69	3	lineage	lineage	NOUN
ajlm-760	69	4	is	be	AUX
ajlm-760	69	5	relatively	relatively	ADV
ajlm-760	69	6	common	common	ADJ
ajlm-760	69	7	across	across	ADP
ajlm-760	69	8	africa	africa	PROPN
ajlm-760	69	9	,	,	PUNCT
ajlm-760	69	10	predominantly	predominantly	ADV
ajlm-760	69	11	in	in	ADP
ajlm-760	69	12	western	western	ADJ
ajlm-760	69	13	and	and	CCONJ
ajlm-760	69	14	central	central	ADJ
ajlm-760	69	15	regions	region	NOUN
ajlm-760	69	16	of	of	ADP
ajlm-760	69	17	sub	sub	ADJ
ajlm-760	69	18	-	-	ADJ
ajlm-760	69	19	saharan	saharan	ADJ
ajlm-760	69	20	africa.42	africa.42	NOUN
ajlm-760	69	21	vibrio	vibrio	ADP
ajlm-760	69	22	cholerae	cholerae	PROPN
ajlm-760	69	23	ribotyping	ribotype	VERB
ajlm-760	69	24	and	and	CCONJ
ajlm-760	69	25	enterobacterial	enterobacterial	ADJ
ajlm-760	69	26	repetitive	repetitive	ADJ
ajlm-760	69	27	intergenic	intergenic	ADJ
ajlm-760	69	28	consensus	consensus	NOUN
ajlm-760	69	29	elements	element	NOUN
ajlm-760	69	30	pcr	pcr	NOUN
ajlm-760	69	31	were	be	AUX
ajlm-760	69	32	among	among	ADP
ajlm-760	69	33	the	the	DET
ajlm-760	69	34	first	first	ADJ
ajlm-760	69	35	molecular	molecular	ADJ
ajlm-760	69	36	subtyping	subtype	VERB
ajlm-760	69	37	techniques	technique	NOUN
ajlm-760	69	38	used	use	VERB
ajlm-760	69	39	to	to	PART
ajlm-760	69	40	characterise	characterise	VERB
ajlm-760	69	41	v.	v.	PROPN
ajlm-760	69	42	cholerae	cholerae	PROPN
ajlm-760	69	43	o1	o1	PROPN
ajlm-760	69	44	in	in	ADP
ajlm-760	69	45	africa.43,44	africa.43,44	NOUN
ajlm-760	69	46	in	in	ADP
ajlm-760	69	47	1996	1996	NUM
ajlm-760	69	48	,	,	PUNCT
ajlm-760	69	49	dalsgaard	dalsgaard	NOUN
ajlm-760	69	50	and	and	CCONJ
ajlm-760	69	51	coworkers43	coworkers43	NOUN
ajlm-760	69	52	documented	document	VERB
ajlm-760	69	53	the	the	DET
ajlm-760	69	54	first	first	ADJ
ajlm-760	69	55	molecular	molecular	ADJ
ajlm-760	69	56	epidemiological	epidemiological	ADJ
ajlm-760	69	57	investigations	investigation	NOUN
ajlm-760	69	58	of	of	ADP
ajlm-760	69	59	mdr	mdr	PROPN
ajlm-760	69	60	v.	v.	PROPN
ajlm-760	69	61	cholerae	cholerae	PROPN
ajlm-760	69	62	o1	o1	PROPN
ajlm-760	69	63	in	in	ADP
ajlm-760	69	64	africa	africa	PROPN
ajlm-760	69	65	.	.	PUNCT
ajlm-760	70	1	they	they	PRON
ajlm-760	70	2	used	use	VERB
ajlm-760	70	3	ribotyping	ribotype	VERB
ajlm-760	70	4	to	to	PART
ajlm-760	70	5	investigate	investigate	VERB
ajlm-760	70	6	outbreak	outbreak	NOUN
ajlm-760	70	7	isolates	isolate	NOUN
ajlm-760	70	8	in	in	ADP
ajlm-760	70	9	guinea	guinea	NOUN
ajlm-760	70	10	-	-	PUNCT
ajlm-760	70	11	bissau	bissau	NOUN
ajlm-760	70	12	;	;	PUNCT
ajlm-760	70	13	strains	strain	NOUN
ajlm-760	70	14	isolated	isolate	VERB
ajlm-760	70	15	in	in	ADP
ajlm-760	70	16	1994–1995	1994–1995	NUM
ajlm-760	70	17	showed	show	VERB
ajlm-760	70	18	a	a	DET
ajlm-760	70	19	ribotype	ribotype	NOUN
ajlm-760	70	20	pattern	pattern	NOUN
ajlm-760	70	21	which	which	PRON
ajlm-760	70	22	was	be	AUX
ajlm-760	70	23	different	different	ADJ
ajlm-760	70	24	fro	fro	NOUN
ajlm-760	70	25	strains	strain	NOUN
ajlm-760	70	26	isolated	isolate	VERB
ajlm-760	70	27	in	in	ADP
ajlm-760	70	28	1987	1987	NUM
ajlm-760	70	29	,	,	PUNCT
ajlm-760	70	30	suggesting	suggest	VERB
ajlm-760	70	31	that	that	SCONJ
ajlm-760	70	32	the	the	DET
ajlm-760	70	33	1994–1995	1994–1995	NUM
ajlm-760	70	34	outbreak	outbreak	NOUN
ajlm-760	70	35	was	be	AUX
ajlm-760	70	36	as	as	ADP
ajlm-760	70	37	a	a	DET
ajlm-760	70	38	result	result	NOUN
ajlm-760	70	39	of	of	ADP
ajlm-760	70	40	the	the	DET
ajlm-760	70	41	introduction	introduction	NOUN
ajlm-760	70	42	of	of	ADP
ajlm-760	70	43	a	a	DET
ajlm-760	70	44	novel	novel	ADJ
ajlm-760	70	45	strain	strain	NOUN
ajlm-760	70	46	into	into	ADP
ajlm-760	70	47	the	the	DET
ajlm-760	70	48	country	country	NOUN
ajlm-760	70	49	.	.	PUNCT
ajlm-760	71	1	later	later	ADV
ajlm-760	71	2	,	,	PUNCT
ajlm-760	71	3	ribotyping	ribotype	VERB
ajlm-760	71	4	analysis	analysis	NOUN
ajlm-760	71	5	of	of	ADP
ajlm-760	71	6	v.	v.	ADP
ajlm-760	71	7	cholerae	cholerae	PROPN
ajlm-760	71	8	o1	o1	PROPN
ajlm-760	71	9	outbreak	outbreak	NOUN
ajlm-760	71	10	isolates	isolate	NOUN
ajlm-760	71	11	from	from	ADP
ajlm-760	71	12	senegal	senegal	PROPN
ajlm-760	71	13	showed	show	VERB
ajlm-760	71	14	the	the	DET
ajlm-760	71	15	same	same	ADJ
ajlm-760	71	16	ribotype	ribotype	NOUN
ajlm-760	71	17	pattern	pattern	NOUN
ajlm-760	71	18	as	as	ADP
ajlm-760	71	19	the	the	DET
ajlm-760	71	20	1994–1995	1994–1995	NUM
ajlm-760	71	21	guinea	guinea	NOUN
ajlm-760	71	22	-	-	PUNCT
ajlm-760	71	23	bissau	bissau	PROPN
ajlm-760	71	24	outbreak	outbreak	NOUN
ajlm-760	71	25	strain	strain	NOUN
ajlm-760	71	26	,	,	PUNCT
ajlm-760	71	27	suggesting	suggest	VERB
ajlm-760	71	28	that	that	SCONJ
ajlm-760	71	29	senegal	senegal	PROPN
ajlm-760	71	30	acquired	acquire	VERB
ajlm-760	71	31	their	their	PRON
ajlm-760	71	32	outbreak	outbreak	NOUN
ajlm-760	71	33	strain	strain	NOUN
ajlm-760	71	34	from	from	ADP
ajlm-760	71	35	guinea	guinea	NOUN
ajlm-760	71	36	-	-	PUNCT
ajlm-760	71	37	bissau.45	bissau.45	NOUN
ajlm-760	71	38	in	in	ADP
ajlm-760	71	39	2001	2001	NUM
ajlm-760	71	40	,	,	PUNCT
ajlm-760	71	41	dalsgaard	dalsgaard	NOUN
ajlm-760	71	42	and	and	CCONJ
ajlm-760	71	43	coworkers46	coworkers46	PROPN
ajlm-760	71	44	reported	report	VERB
ajlm-760	71	45	on	on	ADP
ajlm-760	71	46	the	the	DET
ajlm-760	71	47	clonal	clonal	ADJ
ajlm-760	71	48	relationship	relationship	NOUN
ajlm-760	71	49	(	(	PUNCT
ajlm-760	71	50	using	use	VERB
ajlm-760	71	51	ribotyping	ribotyping	NOUN
ajlm-760	71	52	)	)	PUNCT
ajlm-760	71	53	of	of	ADP
ajlm-760	71	54	cholera	cholera	NOUN
ajlm-760	71	55	isolates	isolate	NOUN
ajlm-760	71	56	from	from	ADP
ajlm-760	71	57	mozambican	mozambican	ADJ
ajlm-760	71	58	migrant	migrant	ADJ
ajlm-760	71	59	workers	worker	NOUN
ajlm-760	71	60	associated	associate	VERB
ajlm-760	71	61	with	with	ADP
ajlm-760	71	62	a	a	DET
ajlm-760	71	63	1998	1998	NUM
ajlm-760	71	64	outbreak	outbreak	NOUN
ajlm-760	71	65	that	that	PRON
ajlm-760	71	66	occurred	occur	VERB
ajlm-760	71	67	in	in	ADP
ajlm-760	71	68	south	south	ADJ
ajlm-760	71	69	african	african	ADJ
ajlm-760	71	70	provinces	province	NOUN
ajlm-760	71	71	bordering	border	VERB
ajlm-760	71	72	mozambique	mozambique	PROPN
ajlm-760	71	73	.	.	PUNCT
ajlm-760	72	1	mdr	mdr	PROPN
ajlm-760	72	2	v.	v.	PROPN
ajlm-760	72	3	cholerae	cholerae	PROPN
ajlm-760	72	4	o1	o1	PROPN
ajlm-760	72	5	isolates	isolate	NOUN
ajlm-760	72	6	were	be	AUX
ajlm-760	72	7	associated	associate	VERB
ajlm-760	72	8	with	with	ADP
ajlm-760	72	9	the	the	DET
ajlm-760	72	10	outbreak	outbreak	NOUN
ajlm-760	72	11	among	among	ADP
ajlm-760	72	12	the	the	DET
ajlm-760	72	13	migrant	migrant	ADJ
ajlm-760	72	14	workers	worker	NOUN
ajlm-760	72	15	and	and	CCONJ
ajlm-760	72	16	the	the	DET
ajlm-760	72	17	isolates	isolate	NOUN
ajlm-760	72	18	showed	show	VERB
ajlm-760	72	19	resistance	resistance	NOUN
ajlm-760	72	20	to	to	ADP
ajlm-760	72	21	furazolidone	furazolidone	NOUN
ajlm-760	72	22	,	,	PUNCT
ajlm-760	72	23	streptomycin	streptomycin	PROPN
ajlm-760	72	24	,	,	PUNCT
ajlm-760	72	25	sulphamethoxazole	sulphamethoxazole	PROPN
ajlm-760	72	26	,	,	PUNCT
ajlm-760	72	27	trimethoprim	trimethoprim	NOUN
ajlm-760	72	28	and	and	CCONJ
ajlm-760	72	29	tetracycline	tetracycline	NOUN
ajlm-760	72	30	;	;	PUNCT
ajlm-760	72	31	isolates	isolate	NOUN
ajlm-760	72	32	also	also	ADV
ajlm-760	72	33	showed	show	VERB
ajlm-760	72	34	the	the	DET
ajlm-760	72	35	presence	presence	NOUN
ajlm-760	72	36	of	of	ADP
ajlm-760	72	37	class	class	NOUN
ajlm-760	72	38	1	1	NUM
ajlm-760	72	39	integrons	integron	NOUN
ajlm-760	72	40	and	and	CCONJ
ajlm-760	72	41	the	the	DET
ajlm-760	72	42	sxt	sxt	PROPN
ajlm-760	72	43	element	element	NOUN
ajlm-760	72	44	.	.	PUNCT
ajlm-760	73	1	another	another	DET
ajlm-760	73	2	analysis	analysis	NOUN
ajlm-760	73	3	of	of	ADP
ajlm-760	73	4	mozambican	mozambican	PROPN
ajlm-760	73	5	mdr	mdr	PROPN
ajlm-760	73	6	isolates	isolate	NOUN
ajlm-760	73	7	associated	associate	VERB
ajlm-760	73	8	with	with	ADP
ajlm-760	73	9	the	the	DET
ajlm-760	73	10	1998	1998	NUM
ajlm-760	73	11	mozambique	mozambique	PROPN
ajlm-760	73	12	/	/	SYM
ajlm-760	73	13	south	south	PROPN
ajlm-760	73	14	africa	africa	PROPN
ajlm-760	73	15	cholera	cholera	PROPN
ajlm-760	73	16	outbreak	outbreak	PROPN
ajlm-760	73	17	confirmed	confirm	VERB
ajlm-760	73	18	the	the	DET
ajlm-760	73	19	presence	presence	NOUN
ajlm-760	73	20	of	of	ADP
ajlm-760	73	21	the	the	DET
ajlm-760	73	22	sxt	sxt	PROPN
ajlm-760	73	23	element	element	NOUN
ajlm-760	73	24	among	among	ADP
ajlm-760	73	25	isolates	isolate	NOUN
ajlm-760	73	26	,	,	PUNCT
ajlm-760	73	27	with	with	SCONJ
ajlm-760	73	28	enterobacterial	enterobacterial	ADJ
ajlm-760	73	29	repetitive	repetitive	ADJ
ajlm-760	73	30	intergenic	intergenic	ADJ
ajlm-760	73	31	consensus	consensus	NOUN
ajlm-760	73	32	elements	element	NOUN
ajlm-760	73	33	pcr	pcr	NOUN
ajlm-760	73	34	dividing	divide	VERB
ajlm-760	73	35	isolates	isolate	NOUN
ajlm-760	73	36	into	into	ADP
ajlm-760	73	37	two	two	NUM
ajlm-760	73	38	different	different	ADJ
ajlm-760	73	39	molecular	molecular	ADJ
ajlm-760	73	40	subtypes.47	subtypes.47	NOUN
ajlm-760	73	41	mobile	mobile	ADJ
ajlm-760	73	42	genetic	genetic	ADJ
ajlm-760	73	43	elements	element	NOUN
ajlm-760	73	44	are	be	AUX
ajlm-760	73	45	mostly	mostly	ADV
ajlm-760	73	46	responsible	responsible	ADJ
ajlm-760	73	47	for	for	ADP
ajlm-760	73	48	the	the	DET
ajlm-760	73	49	molecular	molecular	ADJ
ajlm-760	73	50	basis	basis	NOUN
ajlm-760	73	51	of	of	ADP
ajlm-760	73	52	mdr	mdr	PROPN
ajlm-760	73	53	v.	v.	PROPN
ajlm-760	73	54	cholerae	cholerae	PROPN
ajlm-760	73	55	o1	o1	PROPN
ajlm-760	73	56	in	in	ADP
ajlm-760	73	57	sub	sub	ADJ
ajlm-760	73	58	-	-	ADJ
ajlm-760	73	59	saharan	saharan	ADJ
ajlm-760	73	60	africa	africa	PROPN
ajlm-760	73	61	.	.	PUNCT
ajlm-760	74	1	mobile	mobile	ADJ
ajlm-760	74	2	genetic	genetic	ADJ
ajlm-760	74	3	elements	element	NOUN
ajlm-760	74	4	include	include	VERB
ajlm-760	74	5	transposable	transposable	ADJ
ajlm-760	74	6	elements	element	NOUN
ajlm-760	74	7	(	(	PUNCT
ajlm-760	74	8	sxt	sxt	PROPN
ajlm-760	74	9	elements	element	NOUN
ajlm-760	74	10	)	)	PUNCT
ajlm-760	74	11	,	,	PUNCT
ajlm-760	74	12	integrons	integron	NOUN
ajlm-760	74	13	and	and	CCONJ
ajlm-760	74	14	conjugative	conjugative	ADJ
ajlm-760	74	15	plasmids	plasmid	NOUN
ajlm-760	74	16	.	.	PUNCT
ajlm-760	75	1	the	the	DET
ajlm-760	75	2	sxt	sxt	PROPN
ajlm-760	75	3	element	element	NOUN
ajlm-760	75	4	is	be	AUX
ajlm-760	75	5	a	a	DET
ajlm-760	75	6	self	self	NOUN
ajlm-760	75	7	-	-	PUNCT
ajlm-760	75	8	transmissible	transmissible	ADJ
ajlm-760	75	9	element	element	NOUN
ajlm-760	75	10	that	that	PRON
ajlm-760	75	11	integrates	integrate	VERB
ajlm-760	75	12	into	into	ADP
ajlm-760	75	13	the	the	DET
ajlm-760	75	14	chromosome	chromosome	NOUN
ajlm-760	75	15	and	and	CCONJ
ajlm-760	75	16	carries	carry	VERB
ajlm-760	75	17	genes	gene	NOUN
ajlm-760	75	18	encoding	encode	VERB
ajlm-760	75	19	resistance	resistance	NOUN
ajlm-760	75	20	to	to	ADP
ajlm-760	75	21	several	several	ADJ
ajlm-760	75	22	antimicrobial	antimicrobial	ADJ
ajlm-760	75	23	agents	agent	NOUN
ajlm-760	75	24	,	,	PUNCT
ajlm-760	75	25	including	include	VERB
ajlm-760	75	26	chloramphenicol	chloramphenicol	NOUN
ajlm-760	75	27	,	,	PUNCT
ajlm-760	75	28	sulfamethoxazole	sulfamethoxazole	NOUN
ajlm-760	75	29	,	,	PUNCT
ajlm-760	75	30	streptomycin	streptomycin	PROPN
ajlm-760	75	31	,	,	PUNCT
ajlm-760	75	32	trimethoprim	trimethoprim	NOUN
ajlm-760	75	33	and	and	CCONJ
ajlm-760	75	34	furazolidone	furazolidone	NOUN
ajlm-760	75	35	.	.	PUNCT
ajlm-760	76	1	the	the	DET
ajlm-760	76	2	sxt	sxt	PROPN
ajlm-760	76	3	element	element	NOUN
ajlm-760	76	4	has	have	AUX
ajlm-760	76	5	been	be	AUX
ajlm-760	76	6	reported	report	VERB
ajlm-760	76	7	from	from	ADP
ajlm-760	76	8	numerous	numerous	ADJ
ajlm-760	76	9	countries	country	NOUN
ajlm-760	76	10	in	in	ADP
ajlm-760	76	11	sub	sub	ADJ
ajlm-760	76	12	-	-	ADJ
ajlm-760	76	13	saharan	saharan	ADJ
ajlm-760	76	14	africa.46,48,49,50,51	africa.46,48,49,50,51	NOUN
ajlm-760	76	15	in	in	ADP
ajlm-760	76	16	2006	2006	NUM
ajlm-760	76	17	,	,	PUNCT
ajlm-760	76	18	scrascia	scrascia	NOUN
ajlm-760	76	19	and	and	CCONJ
ajlm-760	76	20	coworkers52	coworkers52	ADV
ajlm-760	76	21	investigated	investigate	VERB
ajlm-760	76	22	v.	v.	ADP
ajlm-760	76	23	cholerae	cholerae	PROPN
ajlm-760	76	24	o1	o1	PROPN
ajlm-760	76	25	isolates	isolate	NOUN
ajlm-760	76	26	from	from	ADP
ajlm-760	76	27	multiple	multiple	ADJ
ajlm-760	76	28	outbreaks	outbreak	NOUN
ajlm-760	76	29	that	that	PRON
ajlm-760	76	30	occurred	occur	VERB
ajlm-760	76	31	in	in	ADP
ajlm-760	76	32	kenya	kenya	NOUN
ajlm-760	76	33	during	during	ADP
ajlm-760	76	34	1998	1998	NUM
ajlm-760	76	35	and	and	CCONJ
ajlm-760	76	36	1999	1999	NUM
ajlm-760	76	37	.	.	PUNCT
ajlm-760	77	1	most	most	ADJ
ajlm-760	77	2	isolates	isolate	NOUN
ajlm-760	77	3	showed	show	VERB
ajlm-760	77	4	an	an	DET
ajlm-760	77	5	identical	identical	ADJ
ajlm-760	77	6	ribotype	ribotype	NOUN
ajlm-760	77	7	profile	profile	NOUN
ajlm-760	77	8	and	and	CCONJ
ajlm-760	77	9	similar	similar	ADJ
ajlm-760	77	10	random	random	ADJ
ajlm-760	77	11	amplified	amplify	VERB
ajlm-760	77	12	polymorphic	polymorphic	ADJ
ajlm-760	77	13	dna	dna	NOUN
ajlm-760	77	14	analysis	analysis	NOUN
ajlm-760	77	15	profile	profile	NOUN
ajlm-760	77	16	suggesting	suggest	VERB
ajlm-760	77	17	a	a	DET
ajlm-760	77	18	clonal	clonal	ADJ
ajlm-760	77	19	origin	origin	NOUN
ajlm-760	77	20	for	for	ADP
ajlm-760	77	21	the	the	DET
ajlm-760	77	22	outbreaks	outbreak	NOUN
ajlm-760	77	23	;	;	PUNCT
ajlm-760	77	24	isolates	isolate	NOUN
ajlm-760	77	25	were	be	AUX
ajlm-760	77	26	resistant	resistant	ADJ
ajlm-760	77	27	to	to	ADP
ajlm-760	77	28	chloramphenicol	chloramphenicol	NOUN
ajlm-760	77	29	,	,	PUNCT
ajlm-760	77	30	spectinomycin	spectinomycin	PROPN
ajlm-760	77	31	,	,	PUNCT
ajlm-760	77	32	streptomycin	streptomycin	PROPN
ajlm-760	77	33	,	,	PUNCT
ajlm-760	77	34	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	77	35	and	and	CCONJ
ajlm-760	77	36	trimethoprim	trimethoprim	NOUN
ajlm-760	77	37	.	.	PUNCT
ajlm-760	78	1	over	over	ADP
ajlm-760	78	2	the	the	DET
ajlm-760	78	3	period	period	NOUN
ajlm-760	78	4	2008–2009	2008–2009	NUM
ajlm-760	78	5	,	,	PUNCT
ajlm-760	78	6	published	publish	VERB
ajlm-760	78	7	data	datum	NOUN
ajlm-760	78	8	from	from	ADP
ajlm-760	78	9	ghana	ghana	PROPN
ajlm-760	78	10	,	,	PUNCT
ajlm-760	78	11	cameroon	cameroon	PROPN
ajlm-760	78	12	,	,	PUNCT
ajlm-760	78	13	ethiopia	ethiopia	PROPN
ajlm-760	78	14	and	and	CCONJ
ajlm-760	78	15	somalia	somalia	PROPN
ajlm-760	78	16	reported	report	VERB
ajlm-760	78	17	similar	similar	ADJ
ajlm-760	78	18	trends	trend	NOUN
ajlm-760	78	19	(	(	PUNCT
ajlm-760	78	20	as	as	SCONJ
ajlm-760	78	21	described	describe	VERB
ajlm-760	78	22	above	above	ADV
ajlm-760	78	23	)	)	PUNCT
ajlm-760	78	24	for	for	ADP
ajlm-760	78	25	mdr	mdr	PROPN
ajlm-760	78	26	v.	v.	PROPN
ajlm-760	78	27	cholerae	cholerae	PROPN
ajlm-760	78	28	o1	o1	PROPN
ajlm-760	78	29	isolates	isolate	NOUN
ajlm-760	78	30	following	follow	VERB
ajlm-760	78	31	analysis	analysis	NOUN
ajlm-760	78	32	using	use	VERB
ajlm-760	78	33	ribotyping	ribotype	VERB
ajlm-760	78	34	and	and	CCONJ
ajlm-760	78	35	random	random	ADJ
ajlm-760	78	36	amplified	amplify	VERB
ajlm-760	78	37	polymorphic	polymorphic	ADJ
ajlm-760	78	38	dna	dna	NOUN
ajlm-760	78	39	analysis	analysis	NOUN
ajlm-760	78	40	that	that	SCONJ
ajlm-760	78	41	of	of	ADP
ajlm-760	78	42	each	each	DET
ajlm-760	78	43	country	country	NOUN
ajlm-760	78	44	reporting	report	VERB
ajlm-760	78	45	a	a	DET
ajlm-760	78	46	clonal	clonal	ADJ
ajlm-760	78	47	origin	origin	NOUN
ajlm-760	78	48	for	for	ADP
ajlm-760	78	49	outbreak	outbreak	NOUN
ajlm-760	78	50	isolates	isolate	NOUN
ajlm-760	78	51	within	within	ADP
ajlm-760	78	52	their	their	PRON
ajlm-760	78	53	respective	respective	ADJ
ajlm-760	78	54	country.50,53,54,55	country.50,53,54,55	NOUN
ajlm-760	78	55	from	from	ADP
ajlm-760	78	56	2007	2007	NUM
ajlm-760	78	57	onwards	onwards	ADP
ajlm-760	78	58	,	,	PUNCT
ajlm-760	78	59	trends	trend	NOUN
ajlm-760	78	60	in	in	ADP
ajlm-760	78	61	molecular	molecular	ADJ
ajlm-760	78	62	subtyping	subtyping	NOUN
ajlm-760	78	63	of	of	ADP
ajlm-760	78	64	v.	v.	ADP
ajlm-760	78	65	cholerae	cholerae	PROPN
ajlm-760	78	66	,	,	PUNCT
ajlm-760	78	67	started	start	VERB
ajlm-760	78	68	shifting	shift	VERB
ajlm-760	78	69	to	to	ADP
ajlm-760	78	70	an	an	DET
ajlm-760	78	71	increased	increase	VERB
ajlm-760	78	72	use	use	NOUN
ajlm-760	78	73	of	of	ADP
ajlm-760	78	74	pfge	pfge	NOUN
ajlm-760	78	75	analysis	analysis	NOUN
ajlm-760	78	76	.	.	PUNCT
ajlm-760	79	1	in	in	ADP
ajlm-760	79	2	2007	2007	NUM
ajlm-760	79	3	,	,	PUNCT
ajlm-760	79	4	keddy	keddy	NOUN
ajlm-760	79	5	and	and	CCONJ
ajlm-760	79	6	coworkers56	coworkers56	VERB
ajlm-760	79	7	used	use	VERB
ajlm-760	79	8	pfge	pfge	NOUN
ajlm-760	79	9	analysis	analysis	NOUN
ajlm-760	79	10	to	to	PART
ajlm-760	79	11	compare	compare	VERB
ajlm-760	79	12	the	the	DET
ajlm-760	79	13	relatedness	relatedness	NOUN
ajlm-760	79	14	of	of	ADP
ajlm-760	79	15	south	south	ADJ
ajlm-760	79	16	african	african	PROPN
ajlm-760	79	17	v.	v.	ADP
ajlm-760	79	18	cholerae	cholerae	PROPN
ajlm-760	79	19	o1	o1	PROPN
ajlm-760	79	20	isolates	isolate	NOUN
ajlm-760	79	21	from	from	ADP
ajlm-760	79	22	a	a	DET
ajlm-760	79	23	2001–2002	2001–2002	NUM
ajlm-760	79	24	epidemic	epidemic	NOUN
ajlm-760	79	25	to	to	ADP
ajlm-760	79	26	that	that	PRON
ajlm-760	79	27	of	of	ADP
ajlm-760	79	28	a	a	DET
ajlm-760	79	29	1980–1987	1980–1987	NUM
ajlm-760	79	30	epidemic	epidemic	NOUN
ajlm-760	79	31	;	;	PUNCT
ajlm-760	79	32	pfge	pfge	NOUN
ajlm-760	79	33	analysis	analysis	NOUN
ajlm-760	79	34	showed	show	VERB
ajlm-760	79	35	that	that	SCONJ
ajlm-760	79	36	isolates	isolate	NOUN
ajlm-760	79	37	from	from	ADP
ajlm-760	79	38	the	the	DET
ajlm-760	79	39	1980–1987	1980–1987	NUM
ajlm-760	79	40	epidemic	epidemic	NOUN
ajlm-760	79	41	were	be	AUX
ajlm-760	79	42	distinctly	distinctly	ADV
ajlm-760	79	43	different	different	ADJ
ajlm-760	79	44	to	to	ADP
ajlm-760	79	45	isolates	isolate	NOUN
ajlm-760	79	46	from	from	ADP
ajlm-760	79	47	the	the	DET
ajlm-760	79	48	2001–2002	2001–2002	NUM
ajlm-760	79	49	outbreak	outbreak	NOUN
ajlm-760	79	50	.	.	PUNCT
ajlm-760	80	1	in	in	ADP
ajlm-760	80	2	2008	2008	NUM
ajlm-760	80	3	,	,	PUNCT
ajlm-760	80	4	smith	smith	PROPN
ajlm-760	80	5	and	and	CCONJ
ajlm-760	80	6	coworkers57	coworkers57	PROPN
ajlm-760	80	7	reported	report	VERB
ajlm-760	80	8	on	on	ADP
ajlm-760	80	9	the	the	DET
ajlm-760	80	10	first	first	ADJ
ajlm-760	80	11	cholera	cholera	NOUN
ajlm-760	80	12	outbreak	outbreak	NOUN
ajlm-760	80	13	in	in	ADP
ajlm-760	80	14	namibia	namibia	PROPN
ajlm-760	80	15	over	over	ADP
ajlm-760	80	16	the	the	DET
ajlm-760	80	17	period	period	NOUN
ajlm-760	80	18	2006–2007	2006–2007	NUM
ajlm-760	80	19	;	;	PUNCT
ajlm-760	80	20	mdr	mdr	PROPN
ajlm-760	80	21	v.	v.	PROPN
ajlm-760	80	22	cholerae	cholerae	PROPN
ajlm-760	80	23	o1	o1	PROPN
ajlm-760	80	24	isolates	isolate	NOUN
ajlm-760	80	25	showed	show	VERB
ajlm-760	80	26	an	an	DET
ajlm-760	80	27	indistinguishable	indistinguishable	ADJ
ajlm-760	80	28	pfge	pfge	NOUN
ajlm-760	80	29	pattern	pattern	NOUN
ajlm-760	80	30	and	and	CCONJ
ajlm-760	80	31	showed	show	VERB
ajlm-760	80	32	resistance	resistance	NOUN
ajlm-760	80	33	to	to	ADP
ajlm-760	80	34	streptomycin	streptomycin	PROPN
ajlm-760	80	35	,	,	PUNCT
ajlm-760	80	36	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	80	37	and	and	CCONJ
ajlm-760	80	38	trimethoprim	trimethoprim	NOUN
ajlm-760	80	39	.	.	PUNCT
ajlm-760	81	1	in	in	ADP
ajlm-760	81	2	2011	2011	NUM
ajlm-760	81	3	,	,	PUNCT
ajlm-760	81	4	ismail	ismail	NOUN
ajlm-760	81	5	and	and	CCONJ
ajlm-760	81	6	coworkers48	coworkers48	NOUN
ajlm-760	81	7	investigated	investigate	VERB
ajlm-760	81	8	an	an	DET
ajlm-760	81	9	outbreak	outbreak	NOUN
ajlm-760	81	10	of	of	ADP
ajlm-760	81	11	esbl	esbl	NOUN
ajlm-760	81	12	-	-	PUNCT
ajlm-760	81	13	producing	produce	VERB
ajlm-760	81	14	mdr	mdr	PROPN
ajlm-760	81	15	v.	v.	PROPN
ajlm-760	81	16	cholerae	cholerae	PROPN
ajlm-760	81	17	o1	o1	PROPN
ajlm-760	81	18	in	in	ADP
ajlm-760	81	19	south	south	PROPN
ajlm-760	81	20	africa	africa	PROPN
ajlm-760	81	21	which	which	PRON
ajlm-760	81	22	occurred	occur	VERB
ajlm-760	81	23	over	over	ADP
ajlm-760	81	24	the	the	DET
ajlm-760	81	25	period	period	NOUN
ajlm-760	81	26	may	may	AUX
ajlm-760	81	27	to	to	ADP
ajlm-760	81	28	july	july	PROPN
ajlm-760	81	29	2008	2008	NUM
ajlm-760	81	30	;	;	PUNCT
ajlm-760	81	31	pfge	pfge	NOUN
ajlm-760	81	32	analysis	analysis	NOUN
ajlm-760	81	33	showed	show	VERB
ajlm-760	81	34	a	a	DET
ajlm-760	81	35	clonal	clonal	ADJ
ajlm-760	81	36	relationship	relationship	NOUN
ajlm-760	81	37	among	among	ADP
ajlm-760	81	38	isolates	isolate	NOUN
ajlm-760	81	39	,	,	PUNCT
ajlm-760	81	40	with	with	ADP
ajlm-760	81	41	isolates	isolate	NOUN
ajlm-760	81	42	showing	show	VERB
ajlm-760	81	43	resistance	resistance	NOUN
ajlm-760	81	44	to	to	ADP
ajlm-760	81	45	ampicillin	ampicillin	PROPN
ajlm-760	81	46	,	,	PUNCT
ajlm-760	81	47	cotrimoxazole	cotrimoxazole	PROPN
ajlm-760	81	48	,	,	PUNCT
ajlm-760	81	49	chloramphenicol	chloramphenicol	NOUN
ajlm-760	81	50	,	,	PUNCT
ajlm-760	81	51	nalidixic	nalidixic	ADJ
ajlm-760	81	52	acid	acid	NOUN
ajlm-760	81	53	,	,	PUNCT
ajlm-760	81	54	tetracycline	tetracycline	NOUN
ajlm-760	81	55	,	,	PUNCT
ajlm-760	81	56	kanamycin	kanamycin	PROPN
ajlm-760	81	57	and	and	CCONJ
ajlm-760	81	58	streptomycin	streptomycin	PROPN
ajlm-760	81	59	.	.	PUNCT
ajlm-760	82	1	the	the	DET
ajlm-760	82	2	molecular	molecular	ADJ
ajlm-760	82	3	basis	basis	NOUN
ajlm-760	82	4	of	of	ADP
ajlm-760	82	5	antimicrobial	antimicrobial	ADJ
ajlm-760	82	6	resistance	resistance	NOUN
ajlm-760	82	7	was	be	AUX
ajlm-760	82	8	explained	explain	VERB
ajlm-760	82	9	by	by	ADP
ajlm-760	82	10	proving	prove	VERB
ajlm-760	82	11	the	the	DET
ajlm-760	82	12	presence	presence	NOUN
ajlm-760	82	13	of	of	ADP
ajlm-760	82	14	the	the	DET
ajlm-760	82	15	sxt	sxt	PROPN
ajlm-760	82	16	element	element	NOUN
ajlm-760	82	17	and	and	CCONJ
ajlm-760	82	18	the	the	DET
ajlm-760	82	19	blatem	blatem	NOUN
ajlm-760	82	20	gene	gene	NOUN
ajlm-760	82	21	encoding	encode	VERB
ajlm-760	82	22	tem-63	tem-63	NUM
ajlm-760	82	23	β	β	NOUN
ajlm-760	82	24	-	-	NOUN
ajlm-760	82	25	lactamase	lactamase	NOUN
ajlm-760	82	26	.	.	PUNCT
ajlm-760	83	1	later	later	ADV
ajlm-760	83	2	in	in	ADP
ajlm-760	83	3	2008	2008	NUM
ajlm-760	83	4	,	,	PUNCT
ajlm-760	83	5	a	a	DET
ajlm-760	83	6	v.	v.	PROPN
ajlm-760	83	7	cholerae	cholerae	PROPN
ajlm-760	83	8	o1	o1	PROPN
ajlm-760	83	9	outbreak	outbreak	NOUN
ajlm-760	83	10	in	in	ADP
ajlm-760	83	11	zimbabwe	zimbabwe	PROPN
ajlm-760	83	12	spilled	spill	VERB
ajlm-760	83	13	over	over	ADP
ajlm-760	83	14	into	into	ADP
ajlm-760	83	15	south	south	PROPN
ajlm-760	83	16	africa	africa	PROPN
ajlm-760	83	17	,	,	PUNCT
ajlm-760	83	18	which	which	PRON
ajlm-760	83	19	triggered	trigger	VERB
ajlm-760	83	20	a	a	DET
ajlm-760	83	21	very	very	ADV
ajlm-760	83	22	large	large	ADJ
ajlm-760	83	23	outbreak	outbreak	NOUN
ajlm-760	83	24	in	in	ADP
ajlm-760	83	25	south	south	PROPN
ajlm-760	83	26	africa	africa	PROPN
ajlm-760	83	27	over	over	ADP
ajlm-760	83	28	the	the	DET
ajlm-760	83	29	period	period	NOUN
ajlm-760	83	30	november	november	PROPN
ajlm-760	83	31	2008	2008	NUM
ajlm-760	83	32	to	to	ADP
ajlm-760	83	33	april	april	PROPN
ajlm-760	83	34	2009	2009	NUM
ajlm-760	83	35	.	.	PUNCT
ajlm-760	84	1	mdr	mdr	PROPN
ajlm-760	84	2	outbreak	outbreak	PROPN
ajlm-760	84	3	isolates	isolate	NOUN
ajlm-760	84	4	showed	show	VERB
ajlm-760	84	5	similar	similar	ADJ
ajlm-760	84	6	pfge	pfge	NOUN
ajlm-760	84	7	patterns	pattern	NOUN
ajlm-760	84	8	:	:	PUNCT
ajlm-760	84	9	isolates	isolate	NOUN
ajlm-760	84	10	showed	show	VERB
ajlm-760	84	11	the	the	DET
ajlm-760	84	12	presence	presence	NOUN
ajlm-760	84	13	of	of	ADP
ajlm-760	84	14	the	the	DET
ajlm-760	84	15	sxt	sxt	PROPN
ajlm-760	84	16	element	element	NOUN
ajlm-760	84	17	encoding	encoding	NOUN
ajlm-760	84	18	multidrug	multidrug	NOUN
ajlm-760	84	19	resistance	resistance	NOUN
ajlm-760	84	20	;	;	PUNCT
ajlm-760	84	21	some	some	DET
ajlm-760	84	22	isolates	isolate	NOUN
ajlm-760	84	23	also	also	ADV
ajlm-760	84	24	showed	show	VERB
ajlm-760	84	25	esbl	esbl	NOUN
ajlm-760	84	26	activity	activity	NOUN
ajlm-760	84	27	due	due	ADP
ajlm-760	84	28	to	to	ADP
ajlm-760	84	29	the	the	DET
ajlm-760	84	30	presence	presence	NOUN
ajlm-760	84	31	of	of	ADP
ajlm-760	84	32	the	the	DET
ajlm-760	84	33	blatem	blatem	NOUN
ajlm-760	84	34	gene	gene	NOUN
ajlm-760	84	35	encoding	encode	VERB
ajlm-760	84	36	tem-63	tem-63	NUM
ajlm-760	84	37	β	β	NOUN
ajlm-760	84	38	-	-	NOUN
ajlm-760	84	39	lactamase.58	lactamase.58	NOUN
ajlm-760	84	40	in	in	ADP
ajlm-760	84	41	october	october	PROPN
ajlm-760	84	42	2010	2010	NUM
ajlm-760	84	43	,	,	PUNCT
ajlm-760	84	44	the	the	DET
ajlm-760	84	45	haiti	haiti	PROPN
ajlm-760	84	46	cholera	cholera	PROPN
ajlm-760	84	47	outbreak	outbreak	PROPN
ajlm-760	84	48	started	start	VERB
ajlm-760	84	49	,	,	PUNCT
ajlm-760	84	50	with	with	ADP
ajlm-760	84	51	involvement	involvement	NOUN
ajlm-760	84	52	of	of	ADP
ajlm-760	84	53	mdr	mdr	PROPN
ajlm-760	84	54	v.	v.	ADP
ajlm-760	84	55	cholerae	cholerae	PROPN
ajlm-760	84	56	o1.59,60	o1.59,60	PROPN
ajlm-760	84	57	pfge	pfge	NOUN
ajlm-760	84	58	analysis	analysis	NOUN
ajlm-760	84	59	of	of	ADP
ajlm-760	84	60	haiti	haiti	PROPN
ajlm-760	84	61	outbreak	outbreak	PROPN
ajlm-760	84	62	strains	strain	NOUN
ajlm-760	84	63	isolated	isolate	VERB
ajlm-760	84	64	over	over	ADP
ajlm-760	84	65	the	the	DET
ajlm-760	84	66	period	period	NOUN
ajlm-760	84	67	october	october	PROPN
ajlm-760	84	68	2010	2010	NUM
ajlm-760	84	69	to	to	ADP
ajlm-760	84	70	february	february	PROPN
ajlm-760	84	71	2011	2011	NUM
ajlm-760	84	72	showed	show	VERB
ajlm-760	84	73	that	that	SCONJ
ajlm-760	84	74	a	a	DET
ajlm-760	84	75	single	single	ADJ
ajlm-760	84	76	pfge	pfge	NOUN
ajlm-760	84	77	profile	profile	NOUN
ajlm-760	84	78	predominated	predominate	VERB
ajlm-760	84	79	.	.	PUNCT
ajlm-760	85	1	this	this	DET
ajlm-760	85	2	predominant	predominant	ADJ
ajlm-760	85	3	profile	profile	NOUN
ajlm-760	85	4	was	be	AUX
ajlm-760	85	5	also	also	ADV
ajlm-760	85	6	shown	show	VERB
ajlm-760	85	7	in	in	ADP
ajlm-760	85	8	mdr	mdr	PROPN
ajlm-760	85	9	strains	strain	VERB
ajlm-760	85	10	from	from	ADP
ajlm-760	85	11	cameroon	cameroon	PROPN
ajlm-760	85	12	,	,	PUNCT
ajlm-760	85	13	south	south	PROPN
ajlm-760	85	14	africa	africa	PROPN
ajlm-760	85	15	,	,	PUNCT
ajlm-760	85	16	india	india	PROPN
ajlm-760	85	17	,	,	PUNCT
ajlm-760	85	18	nepal	nepal	PROPN
ajlm-760	85	19	,	,	PUNCT
ajlm-760	85	20	pakistan	pakistan	PROPN
ajlm-760	85	21	,	,	PUNCT
ajlm-760	85	22	afghanistan	afghanistan	PROPN
ajlm-760	85	23	and	and	CCONJ
ajlm-760	85	24	oman61	oman61	NOUN
ajlm-760	85	25	;	;	PUNCT
ajlm-760	85	26	this	this	DET
ajlm-760	85	27	global	global	ADJ
ajlm-760	85	28	comparison	comparison	NOUN
ajlm-760	85	29	of	of	ADP
ajlm-760	85	30	v.	v.	PROPN
ajlm-760	85	31	cholerae	cholerae	PROPN
ajlm-760	85	32	o1	o1	PROPN
ajlm-760	85	33	pfge	pfge	NOUN
ajlm-760	85	34	patterns	pattern	NOUN
ajlm-760	85	35	was	be	AUX
ajlm-760	85	36	facilitated	facilitate	VERB
ajlm-760	85	37	via	via	ADP
ajlm-760	85	38	pulsenet	pulsenet	NOUN
ajlm-760	85	39	international	international	ADJ
ajlm-760	85	40	laboratories	laboratory	NOUN
ajlm-760	85	41	.	.	PUNCT
ajlm-760	86	1	further	further	ADJ
ajlm-760	86	2	investigation	investigation	NOUN
ajlm-760	86	3	with	with	ADP
ajlm-760	86	4	wgs	wgs	NOUN
ajlm-760	86	5	-	-	PUNCT
ajlm-760	86	6	snp	snp	NOUN
ajlm-760	86	7	analysis	analysis	NOUN
ajlm-760	86	8	showed	show	VERB
ajlm-760	86	9	that	that	SCONJ
ajlm-760	86	10	the	the	DET
ajlm-760	86	11	haiti	haiti	PROPN
ajlm-760	86	12	outbreak	outbreak	PROPN
ajlm-760	86	13	strain	strain	PROPN
ajlm-760	86	14	was	be	AUX
ajlm-760	86	15	a	a	DET
ajlm-760	86	16	hybrid	hybrid	NOUN
ajlm-760	86	17	-	-	PUNCT
ajlm-760	86	18	type	type	NOUN
ajlm-760	86	19	of	of	ADP
ajlm-760	86	20	el	el	PROPN
ajlm-760	86	21	tor	tor	PROPN
ajlm-760	86	22	strain	strain	NOUN
ajlm-760	86	23	encoding	encode	VERB
ajlm-760	86	24	a	a	DET
ajlm-760	86	25	classical	classical	ADJ
ajlm-760	86	26	-	-	PUNCT
ajlm-760	86	27	type	type	NOUN
ajlm-760	86	28	of	of	ADP
ajlm-760	86	29	cholera	cholera	NOUN
ajlm-760	86	30	toxin	toxin	NOUN
ajlm-760	86	31	and	and	CCONJ
ajlm-760	86	32	that	that	SCONJ
ajlm-760	86	33	the	the	DET
ajlm-760	86	34	outbreak	outbreak	NOUN
ajlm-760	86	35	strain	strain	NOUN
ajlm-760	86	36	was	be	AUX
ajlm-760	86	37	most	most	ADV
ajlm-760	86	38	closely	closely	ADV
ajlm-760	86	39	related	relate	VERB
ajlm-760	86	40	to	to	ADP
ajlm-760	86	41	strains	strain	NOUN
ajlm-760	86	42	originating	originate	VERB
ajlm-760	86	43	from	from	ADP
ajlm-760	86	44	india	india	PROPN
ajlm-760	86	45	and	and	CCONJ
ajlm-760	86	46	cameroon.62	cameroon.62	VERB
ajlm-760	86	47	the	the	DET
ajlm-760	86	48	haiti	haiti	PROPN
ajlm-760	86	49	cholera	cholera	PROPN
ajlm-760	86	50	outbreak	outbreak	PROPN
ajlm-760	86	51	identified	identify	VERB
ajlm-760	86	52	the	the	DET
ajlm-760	86	53	need	need	NOUN
ajlm-760	86	54	for	for	ADP
ajlm-760	86	55	higher	high	ADJ
ajlm-760	86	56	resolution	resolution	NOUN
ajlm-760	86	57	molecular	molecular	ADJ
ajlm-760	86	58	subtyping	subtype	VERB
ajlm-760	86	59	methodologies	methodology	NOUN
ajlm-760	86	60	for	for	ADP
ajlm-760	86	61	comparison	comparison	NOUN
ajlm-760	86	62	of	of	ADP
ajlm-760	86	63	v.	v.	PROPN
ajlm-760	86	64	cholerae	cholerae	PROPN
ajlm-760	86	65	o1	o1	PROPN
ajlm-760	86	66	isolates	isolate	NOUN
ajlm-760	86	67	;	;	PUNCT
ajlm-760	86	68	this	this	PRON
ajlm-760	86	69	sparked	spark	VERB
ajlm-760	86	70	the	the	DET
ajlm-760	86	71	increased	increase	VERB
ajlm-760	86	72	use	use	NOUN
ajlm-760	86	73	of	of	ADP
ajlm-760	86	74	nucleotide	nucleotide	NOUN
ajlm-760	86	75	sequencing	sequence	VERB
ajlm-760	86	76	approaches	approach	NOUN
ajlm-760	86	77	including	include	VERB
ajlm-760	86	78	wgs	wgs	NOUN
ajlm-760	86	79	,	,	PUNCT
ajlm-760	86	80	to	to	PART
ajlm-760	86	81	generate	generate	VERB
ajlm-760	86	82	nucleotide	nucleotide	ADJ
ajlm-760	86	83	sequence	sequence	NOUN
ajlm-760	86	84	data	datum	NOUN
ajlm-760	86	85	for	for	ADP
ajlm-760	86	86	comparison	comparison	NOUN
ajlm-760	86	87	of	of	ADP
ajlm-760	86	88	isolates	isolate	NOUN
ajlm-760	86	89	.	.	PUNCT
ajlm-760	87	1	in	in	ADP
ajlm-760	87	2	2011	2011	NUM
ajlm-760	87	3	,	,	PUNCT
ajlm-760	87	4	thompson	thompson	NOUN
ajlm-760	87	5	and	and	CCONJ
ajlm-760	87	6	coworkers63	coworkers63	NOUN
ajlm-760	87	7	characterised	characterise	VERB
ajlm-760	87	8	v.	v.	ADP
ajlm-760	87	9	cholerae	cholerae	PROPN
ajlm-760	87	10	o1	o1	PROPN
ajlm-760	87	11	outbreak	outbreak	NOUN
ajlm-760	87	12	isolates	isolate	NOUN
ajlm-760	87	13	from	from	ADP
ajlm-760	87	14	ghana	ghana	PROPN
ajlm-760	87	15	using	use	VERB
ajlm-760	87	16	multilocus	multilocus	NOUN
ajlm-760	87	17	sequence	sequence	NOUN
ajlm-760	87	18	analysis	analysis	NOUN
ajlm-760	87	19	of	of	ADP
ajlm-760	87	20	housekeeping	housekeeping	NOUN
ajlm-760	87	21	genes	gene	NOUN
ajlm-760	87	22	and	and	CCONJ
ajlm-760	87	23	identified	identify	VERB
ajlm-760	87	24	two	two	NUM
ajlm-760	87	25	major	major	ADJ
ajlm-760	87	26	clusters	cluster	NOUN
ajlm-760	87	27	in	in	ADP
ajlm-760	87	28	ghana	ghana	PROPN
ajlm-760	87	29	.	.	PUNCT
ajlm-760	88	1	in	in	ADP
ajlm-760	88	2	2011	2011	NUM
ajlm-760	88	3	,	,	PUNCT
ajlm-760	88	4	mutreja	mutreja	ADJ
ajlm-760	88	5	and	and	CCONJ
ajlm-760	88	6	coworkers64	coworkers64	ADV
ajlm-760	88	7	provided	provide	VERB
ajlm-760	88	8	evidence	evidence	NOUN
ajlm-760	88	9	for	for	ADP
ajlm-760	88	10	multiple	multiple	ADJ
ajlm-760	88	11	waves	wave	NOUN
ajlm-760	88	12	of	of	ADP
ajlm-760	88	13	global	global	ADJ
ajlm-760	88	14	transmission	transmission	NOUN
ajlm-760	88	15	(	(	PUNCT
ajlm-760	88	16	from	from	ADP
ajlm-760	88	17	the	the	DET
ajlm-760	88	18	bay	bay	NOUN
ajlm-760	88	19	of	of	ADP
ajlm-760	88	20	bengal	bengal	PROPN
ajlm-760	88	21	)	)	PUNCT
ajlm-760	88	22	within	within	ADP
ajlm-760	88	23	the	the	DET
ajlm-760	88	24	seventh	seventh	ADJ
ajlm-760	88	25	cholera	cholera	NOUN
ajlm-760	88	26	pandemic	pandemic	NOUN
ajlm-760	88	27	,	,	PUNCT
ajlm-760	88	28	which	which	PRON
ajlm-760	88	29	included	include	VERB
ajlm-760	88	30	multiple	multiple	ADJ
ajlm-760	88	31	waves	wave	NOUN
ajlm-760	88	32	of	of	ADP
ajlm-760	88	33	transmission	transmission	NOUN
ajlm-760	88	34	into	into	ADP
ajlm-760	88	35	sub	sub	ADJ
ajlm-760	88	36	-	-	ADJ
ajlm-760	88	37	saharan	saharan	ADJ
ajlm-760	88	38	africa	africa	PROPN
ajlm-760	88	39	;	;	PUNCT
ajlm-760	88	40	these	these	DET
ajlm-760	88	41	data	datum	NOUN
ajlm-760	88	42	were	be	AUX
ajlm-760	88	43	made	make	VERB
ajlm-760	88	44	possible	possible	ADJ
ajlm-760	88	45	by	by	ADP
ajlm-760	88	46	analysis	analysis	NOUN
ajlm-760	88	47	of	of	ADP
ajlm-760	88	48	wgs	wgs	NOUN
ajlm-760	88	49	data	datum	NOUN
ajlm-760	88	50	(	(	PUNCT
ajlm-760	88	51	wgs	wgs	NOUN
ajlm-760	88	52	-	-	PUNCT
ajlm-760	88	53	snp	snp	NOUN
ajlm-760	88	54	analysis	analysis	NOUN
ajlm-760	88	55	approach	approach	NOUN
ajlm-760	88	56	)	)	PUNCT
ajlm-760	88	57	from	from	ADP
ajlm-760	88	58	a	a	DET
ajlm-760	88	59	global	global	ADJ
ajlm-760	88	60	collection	collection	NOUN
ajlm-760	88	61	of	of	ADP
ajlm-760	88	62	v.	v.	PROPN
ajlm-760	88	63	cholerae	cholerae	PROPN
ajlm-760	88	64	o1	o1	PROPN
ajlm-760	88	65	isolates	isolate	NOUN
ajlm-760	88	66	,	,	PUNCT
ajlm-760	88	67	including	include	VERB
ajlm-760	88	68	african	african	ADJ
ajlm-760	88	69	outbreak	outbreak	NOUN
ajlm-760	88	70	isolates	isolate	NOUN
ajlm-760	88	71	.	.	PUNCT
ajlm-760	89	1	in	in	ADP
ajlm-760	89	2	2013	2013	NUM
ajlm-760	89	3	,	,	PUNCT
ajlm-760	89	4	kiiru	kiiru	NOUN
ajlm-760	89	5	and	and	CCONJ
ajlm-760	89	6	coworkers,65	coworkers,65	NOUN
ajlm-760	89	7	reported	report	VERB
ajlm-760	89	8	a	a	DET
ajlm-760	89	9	wgs	wgs	NOUN
ajlm-760	89	10	-	-	PUNCT
ajlm-760	89	11	snp	snp	ADJ
ajlm-760	89	12	analysis	analysis	NOUN
ajlm-760	89	13	on	on	ADP
ajlm-760	89	14	kenyan	kenyan	PROPN
ajlm-760	89	15	v.	v.	ADP
ajlm-760	89	16	cholerae	cholerae	PROPN
ajlm-760	89	17	isolates	isolate	NOUN
ajlm-760	89	18	which	which	PRON
ajlm-760	89	19	included	include	VERB
ajlm-760	89	20	environmental	environmental	ADJ
ajlm-760	89	21	isolates	isolate	NOUN
ajlm-760	89	22	(	(	PUNCT
ajlm-760	89	23	serogroups	serogroups	PROPN
ajlm-760	89	24	o1	o1	PROPN
ajlm-760	89	25	and	and	CCONJ
ajlm-760	89	26	non	non	ADJ
ajlm-760	89	27	-	-	NOUN
ajlm-760	89	28	o1	o1	NOUN
ajlm-760	89	29	)	)	PUNCT
ajlm-760	89	30	and	and	CCONJ
ajlm-760	89	31	v.	v.	ADP
ajlm-760	89	32	cholerae	cholerae	PROPN
ajlm-760	89	33	o1	o1	PROPN
ajlm-760	89	34	clinical	clinical	ADJ
ajlm-760	89	35	isolates	isolate	NOUN
ajlm-760	89	36	associated	associate	VERB
ajlm-760	89	37	with	with	ADP
ajlm-760	89	38	outbreaks	outbreak	NOUN
ajlm-760	89	39	;	;	PUNCT
ajlm-760	89	40	they	they	PRON
ajlm-760	89	41	found	find	VERB
ajlm-760	89	42	that	that	SCONJ
ajlm-760	89	43	a	a	DET
ajlm-760	89	44	clade	clade	NOUN
ajlm-760	89	45	comprising	comprise	VERB
ajlm-760	89	46	clinical	clinical	ADJ
ajlm-760	89	47	isolates	isolate	NOUN
ajlm-760	89	48	and	and	CCONJ
ajlm-760	89	49	some	some	DET
ajlm-760	89	50	environmental	environmental	ADJ
ajlm-760	89	51	isolates	isolate	NOUN
ajlm-760	89	52	mapped	map	VERB
ajlm-760	89	53	back	back	ADV
ajlm-760	89	54	onto	onto	ADP
ajlm-760	89	55	wave	wave	NOUN
ajlm-760	89	56	three	three	NUM
ajlm-760	89	57	of	of	ADP
ajlm-760	89	58	the	the	DET
ajlm-760	89	59	monophyletic	monophyletic	ADJ
ajlm-760	89	60	seventh	seventh	ADJ
ajlm-760	89	61	cholera	cholera	NOUN
ajlm-760	89	62	pandemic	pandemic	ADJ
ajlm-760	89	63	phylogeny	phylogeny	NOUN
ajlm-760	89	64	,	,	PUNCT
ajlm-760	89	65	while	while	SCONJ
ajlm-760	89	66	some	some	DET
ajlm-760	89	67	other	other	ADJ
ajlm-760	89	68	environmental	environmental	ADJ
ajlm-760	89	69	isolates	isolate	NOUN
ajlm-760	89	70	were	be	AUX
ajlm-760	89	71	phylogenetically	phylogenetically	ADV
ajlm-760	89	72	very	very	ADV
ajlm-760	89	73	different	different	ADJ
ajlm-760	89	74	from	from	ADP
ajlm-760	89	75	the	the	DET
ajlm-760	89	76	monophyletic	monophyletic	ADJ
ajlm-760	89	77	seventh	seventh	ADJ
ajlm-760	89	78	pandemic	pandemic	ADJ
ajlm-760	89	79	lineage	lineage	NOUN
ajlm-760	89	80	of	of	ADP
ajlm-760	89	81	v.	v.	PROPN
ajlm-760	89	82	cholerae	cholerae	PROPN
ajlm-760	89	83	o1	o1	PROPN
ajlm-760	89	84	.	.	PUNCT
ajlm-760	90	1	the	the	DET
ajlm-760	90	2	continued	continue	VERB
ajlm-760	90	3	presence	presence	NOUN
ajlm-760	90	4	of	of	ADP
ajlm-760	90	5	mdr	mdr	PROPN
ajlm-760	90	6	associated	associated	PROPN
ajlm-760	90	7	stx	stx	NOUN
ajlm-760	90	8	elements	element	NOUN
ajlm-760	90	9	were	be	AUX
ajlm-760	90	10	documented	document	VERB
ajlm-760	90	11	on	on	ADP
ajlm-760	90	12	the	the	DET
ajlm-760	90	13	genomes	genome	NOUN
ajlm-760	90	14	of	of	ADP
ajlm-760	90	15	mdr	mdr	PROPN
ajlm-760	90	16	clinical	clinical	PROPN
ajlm-760	90	17	and	and	CCONJ
ajlm-760	90	18	mdr	mdr	PROPN
ajlm-760	90	19	environmental	environmental	ADJ
ajlm-760	90	20	isolates	isolate	NOUN
ajlm-760	90	21	.	.	PUNCT
ajlm-760	91	1	recent	recent	ADJ
ajlm-760	91	2	isolates	isolate	NOUN
ajlm-760	91	3	of	of	ADP
ajlm-760	91	4	v.	v.	ADP
ajlm-760	91	5	cholerae	cholerae	PROPN
ajlm-760	91	6	o1	o1	PROPN
ajlm-760	91	7	from	from	ADP
ajlm-760	91	8	tanzania	tanzania	PROPN
ajlm-760	91	9	have	have	AUX
ajlm-760	91	10	also	also	ADV
ajlm-760	91	11	been	be	AUX
ajlm-760	91	12	found	find	VERB
ajlm-760	91	13	to	to	PART
ajlm-760	91	14	map	map	VERB
ajlm-760	91	15	back	back	ADV
ajlm-760	91	16	onto	onto	ADP
ajlm-760	91	17	wave	wave	NOUN
ajlm-760	91	18	three	three	NUM
ajlm-760	91	19	of	of	ADP
ajlm-760	91	20	the	the	DET
ajlm-760	91	21	monophyletic	monophyletic	ADJ
ajlm-760	91	22	seventh	seventh	ADJ
ajlm-760	91	23	cholera	cholera	NOUN
ajlm-760	91	24	pandemic	pandemic	ADJ
ajlm-760	91	25	phylogeny	phylogeny	NOUN
ajlm-760	91	26	,	,	PUNCT
ajlm-760	91	27	as	as	SCONJ
ajlm-760	91	28	determined	determine	VERB
ajlm-760	91	29	by	by	ADP
ajlm-760	91	30	wgs	wgs	NOUN
ajlm-760	91	31	-	-	PUNCT
ajlm-760	91	32	snp	snp	ADJ
ajlm-760	91	33	analysis.66	analysis.66	NOUN
ajlm-760	91	34	interestingly	interestingly	ADV
ajlm-760	91	35	,	,	PUNCT
ajlm-760	91	36	wgs	wgs	ADJ
ajlm-760	91	37	-	-	PUNCT
ajlm-760	91	38	snp	snp	NOUN
ajlm-760	91	39	analysis	analysis	NOUN
ajlm-760	91	40	of	of	ADP
ajlm-760	91	41	mdr	mdr	PROPN
ajlm-760	91	42	v.	v.	PROPN
ajlm-760	91	43	cholerae	cholerae	PROPN
ajlm-760	91	44	o1	o1	PROPN
ajlm-760	91	45	outbreak	outbreak	NOUN
ajlm-760	91	46	isolates	isolate	NOUN
ajlm-760	91	47	recently	recently	ADV
ajlm-760	91	48	sourced	source	VERB
ajlm-760	91	49	from	from	ADP
ajlm-760	91	50	cameroon	cameroon	PROPN
ajlm-760	91	51	has	have	AUX
ajlm-760	91	52	found	find	VERB
ajlm-760	91	53	that	that	SCONJ
ajlm-760	91	54	these	these	DET
ajlm-760	91	55	cameroonian	cameroonian	ADJ
ajlm-760	91	56	isolates	isolate	NOUN
ajlm-760	91	57	do	do	AUX
ajlm-760	91	58	not	not	PART
ajlm-760	91	59	map	map	VERB
ajlm-760	91	60	onto	onto	ADP
ajlm-760	91	61	the	the	DET
ajlm-760	91	62	phylogeny	phylogeny	NOUN
ajlm-760	91	63	of	of	ADP
ajlm-760	91	64	isolates	isolate	NOUN
ajlm-760	91	65	from	from	ADP
ajlm-760	91	66	other	other	ADJ
ajlm-760	91	67	african	african	ADJ
ajlm-760	91	68	countries	country	NOUN
ajlm-760	91	69	such	such	ADJ
ajlm-760	91	70	as	as	ADP
ajlm-760	91	71	kenya	kenya	PROPN
ajlm-760	91	72	,	,	PUNCT
ajlm-760	91	73	tanzania	tanzania	PROPN
ajlm-760	91	74	,	,	PUNCT
ajlm-760	91	75	zambia	zambia	PROPN
ajlm-760	91	76	,	,	PUNCT
ajlm-760	91	77	zimbabwe	zimbabwe	NOUN
ajlm-760	91	78	and	and	CCONJ
ajlm-760	91	79	mozambique	mozambique	PROPN
ajlm-760	91	80	;	;	PUNCT
ajlm-760	91	81	instead	instead	ADV
ajlm-760	91	82	,	,	PUNCT
ajlm-760	91	83	cameroonian	cameroonian	ADJ
ajlm-760	91	84	isolates	isolate	NOUN
ajlm-760	91	85	are	be	AUX
ajlm-760	91	86	of	of	ADP
ajlm-760	91	87	their	their	PRON
ajlm-760	91	88	own	own	ADJ
ajlm-760	91	89	distinct	distinct	ADJ
ajlm-760	91	90	clonal	clonal	ADJ
ajlm-760	91	91	cluster	cluster	NOUN
ajlm-760	91	92	(	(	PUNCT
ajlm-760	91	93	clade	clade	NOUN
ajlm-760	91	94	)	)	PUNCT
ajlm-760	91	95	,	,	PUNCT
ajlm-760	91	96	forming	form	VERB
ajlm-760	91	97	part	part	NOUN
ajlm-760	91	98	of	of	ADP
ajlm-760	91	99	an	an	DET
ajlm-760	91	100	isolated	isolated	ADJ
ajlm-760	91	101	reservoir	reservoir	NOUN
ajlm-760	91	102	of	of	ADP
ajlm-760	91	103	mdr	mdr	PROPN
ajlm-760	91	104	v.	v.	PROPN
ajlm-760	91	105	cholerae	cholerae	PROPN
ajlm-760	91	106	o1	o1	PROPN
ajlm-760	91	107	in	in	ADP
ajlm-760	91	108	the	the	DET
ajlm-760	91	109	lake	lake	NOUN
ajlm-760	91	110	chad	chad	PROPN
ajlm-760	91	111	basin.67	basin.67	PROPN
ajlm-760	91	112	although	although	SCONJ
ajlm-760	91	113	wgs	wgs	NOUN
ajlm-760	91	114	approaches	approach	VERB
ajlm-760	91	115	for	for	ADP
ajlm-760	91	116	comparison	comparison	NOUN
ajlm-760	91	117	of	of	ADP
ajlm-760	91	118	v.	v.	ADP
ajlm-760	91	119	cholerae	cholerae	PROPN
ajlm-760	91	120	isolates	isolate	NOUN
ajlm-760	91	121	have	have	AUX
ajlm-760	91	122	gained	gain	VERB
ajlm-760	91	123	a	a	DET
ajlm-760	91	124	stronghold	stronghold	NOUN
ajlm-760	91	125	in	in	ADP
ajlm-760	91	126	sub	sub	ADJ
ajlm-760	91	127	-	-	ADJ
ajlm-760	91	128	saharan	saharan	ADJ
ajlm-760	91	129	africa	africa	PROPN
ajlm-760	91	130	,	,	PUNCT
ajlm-760	91	131	the	the	DET
ajlm-760	91	132	traditional	traditional	ADJ
ajlm-760	91	133	molecular	molecular	ADJ
ajlm-760	91	134	subtyping	subtyping	NOUN
ajlm-760	91	135	methodologies	methodology	NOUN
ajlm-760	91	136	of	of	ADP
ajlm-760	91	137	pfge	pfge	NOUN
ajlm-760	91	138	,	,	PUNCT
ajlm-760	91	139	mlva	mlva	NOUN
ajlm-760	91	140	and	and	CCONJ
ajlm-760	91	141	mlst	mlst	NOUN
ajlm-760	91	142	are	be	AUX
ajlm-760	91	143	still	still	ADV
ajlm-760	91	144	commonly	commonly	ADV
ajlm-760	91	145	used	use	VERB
ajlm-760	91	146	to	to	PART
ajlm-760	91	147	investigate	investigate	VERB
ajlm-760	91	148	the	the	DET
ajlm-760	91	149	molecular	molecular	ADJ
ajlm-760	91	150	epidemiology	epidemiology	NOUN
ajlm-760	91	151	of	of	ADP
ajlm-760	91	152	v.	v.	ADP
ajlm-760	91	153	cholerae	cholerae	PROPN
ajlm-760	91	154	in	in	ADP
ajlm-760	91	155	sub	sub	ADJ
ajlm-760	91	156	-	-	ADJ
ajlm-760	91	157	saharan	saharan	ADJ
ajlm-760	91	158	africa	africa	PROPN
ajlm-760	91	159	,	,	PUNCT
ajlm-760	91	160	as	as	SCONJ
ajlm-760	91	161	these	these	DET
ajlm-760	91	162	technologies	technology	NOUN
ajlm-760	91	163	still	still	ADV
ajlm-760	91	164	remain	remain	VERB
ajlm-760	91	165	more	more	ADV
ajlm-760	91	166	accessible	accessible	ADJ
ajlm-760	91	167	and	and	CCONJ
ajlm-760	91	168	more	more	ADV
ajlm-760	91	169	affordable	affordable	ADJ
ajlm-760	91	170	for	for	ADP
ajlm-760	91	171	most	most	ADJ
ajlm-760	91	172	laboratories66,68,69,70,71,72,73	laboratories66,68,69,70,71,72,73	NOUN
ajlm-760	91	173	.	.	PUNCT
ajlm-760	92	1	for	for	ADP
ajlm-760	92	2	these	these	DET
ajlm-760	92	3	recent	recent	ADJ
ajlm-760	92	4	reports	report	NOUN
ajlm-760	92	5	,	,	PUNCT
ajlm-760	92	6	the	the	DET
ajlm-760	92	7	central	central	ADJ
ajlm-760	92	8	themes	theme	NOUN
ajlm-760	92	9	remain	remain	VERB
ajlm-760	92	10	the	the	DET
ajlm-760	92	11	same	same	ADJ
ajlm-760	92	12	as	as	ADP
ajlm-760	92	13	previous	previous	ADJ
ajlm-760	92	14	studies	study	NOUN
ajlm-760	92	15	.	.	PUNCT
ajlm-760	93	1	the	the	DET
ajlm-760	93	2	major	major	ADJ
ajlm-760	93	3	conclusions	conclusion	NOUN
ajlm-760	93	4	for	for	ADP
ajlm-760	93	5	these	these	DET
ajlm-760	93	6	studies	study	NOUN
ajlm-760	93	7	are	be	AUX
ajlm-760	93	8	summarised	summarise	VERB
ajlm-760	93	9	as	as	SCONJ
ajlm-760	93	10	follows	follow	VERB
ajlm-760	93	11	.	.	PUNCT
ajlm-760	94	1	the	the	DET
ajlm-760	94	2	most	most	ADV
ajlm-760	94	3	commonly	commonly	ADV
ajlm-760	94	4	reported	report	VERB
ajlm-760	94	5	cholera	cholera	NOUN
ajlm-760	94	6	-	-	PUNCT
ajlm-760	94	7	causing	cause	VERB
ajlm-760	94	8	organism	organism	NOUN
ajlm-760	94	9	is	be	AUX
ajlm-760	94	10	characterised	characterise	VERB
ajlm-760	94	11	as	as	ADP
ajlm-760	94	12	v.	v.	ADP
ajlm-760	94	13	cholerae	cholerae	PROPN
ajlm-760	94	14	o1	o1	PROPN
ajlm-760	94	15	biotype	biotype	PROPN
ajlm-760	94	16	el	el	PROPN
ajlm-760	94	17	tor	tor	PROPN
ajlm-760	94	18	,	,	PUNCT
ajlm-760	94	19	the	the	DET
ajlm-760	94	20	so	so	ADV
ajlm-760	94	21	-	-	PUNCT
ajlm-760	94	22	called	call	VERB
ajlm-760	94	23	‘	'	PUNCT
ajlm-760	94	24	atypical	atypical	ADJ
ajlm-760	94	25	’	'	PUNCT
ajlm-760	94	26	el	el	NOUN
ajlm-760	94	27	tor	tor	PROPN
ajlm-760	94	28	variant	variant	NOUN
ajlm-760	94	29	housing	housing	NOUN
ajlm-760	94	30	genetic	genetic	ADJ
ajlm-760	94	31	determinants	determinant	NOUN
ajlm-760	94	32	coding	code	VERB
ajlm-760	94	33	for	for	ADP
ajlm-760	94	34	a	a	DET
ajlm-760	94	35	‘	'	PUNCT
ajlm-760	94	36	classical	classical	ADJ
ajlm-760	94	37	-	-	PUNCT
ajlm-760	94	38	type	type	NOUN
ajlm-760	94	39	’	'	PUNCT
ajlm-760	94	40	of	of	ADP
ajlm-760	94	41	cholera	cholera	NOUN
ajlm-760	94	42	toxin	toxin	NOUN
ajlm-760	94	43	.	.	PUNCT
ajlm-760	95	1	the	the	DET
ajlm-760	95	2	majority	majority	NOUN
ajlm-760	95	3	of	of	ADP
ajlm-760	95	4	v.	v.	PROPN
ajlm-760	95	5	cholerae	cholerae	PROPN
ajlm-760	95	6	o1	o1	PROPN
ajlm-760	95	7	isolates	isolate	NOUN
ajlm-760	95	8	show	show	VERB
ajlm-760	95	9	the	the	DET
ajlm-760	95	10	presence	presence	NOUN
ajlm-760	95	11	of	of	ADP
ajlm-760	95	12	sxt	sxt	PROPN
ajlm-760	95	13	elements	element	NOUN
ajlm-760	95	14	encoding	encode	VERB
ajlm-760	95	15	a	a	DET
ajlm-760	95	16	large	large	ADJ
ajlm-760	95	17	part	part	NOUN
ajlm-760	95	18	of	of	ADP
ajlm-760	95	19	the	the	DET
ajlm-760	95	20	mdr	mdr	PROPN
ajlm-760	95	21	phenotype	phenotype	NOUN
ajlm-760	95	22	.	.	PUNCT
ajlm-760	96	1	the	the	DET
ajlm-760	96	2	majority	majority	NOUN
ajlm-760	96	3	of	of	ADP
ajlm-760	96	4	isolates	isolate	NOUN
ajlm-760	96	5	show	show	VERB
ajlm-760	96	6	mdr	mdr	PROPN
ajlm-760	96	7	.	.	PUNCT
ajlm-760	97	1	a	a	DET
ajlm-760	97	2	common	common	ADJ
ajlm-760	97	3	profile	profile	NOUN
ajlm-760	97	4	includes	include	VERB
ajlm-760	97	5	resistance	resistance	NOUN
ajlm-760	97	6	to	to	ADP
ajlm-760	97	7	ampicillin	ampicillin	PROPN
ajlm-760	97	8	,	,	PUNCT
ajlm-760	97	9	chloramphenicol	chloramphenicol	NOUN
ajlm-760	97	10	,	,	PUNCT
ajlm-760	97	11	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	97	12	,	,	PUNCT
ajlm-760	97	13	trimethoprim	trimethoprim	NOUN
ajlm-760	97	14	,	,	PUNCT
ajlm-760	97	15	spectinomycin	spectinomycin	PROPN
ajlm-760	97	16	and	and	CCONJ
ajlm-760	97	17	streptomycin	streptomycin	PROPN
ajlm-760	97	18	,	,	PUNCT
ajlm-760	97	19	including	include	VERB
ajlm-760	97	20	reduced	reduce	VERB
ajlm-760	97	21	susceptibility	susceptibility	NOUN
ajlm-760	97	22	to	to	ADP
ajlm-760	97	23	ciprofloxacin	ciprofloxacin	PRON
ajlm-760	97	24	.	.	PUNCT
ajlm-760	98	1	molecular	molecular	ADJ
ajlm-760	98	2	subtyping	subtyping	NOUN
ajlm-760	98	3	of	of	ADP
ajlm-760	98	4	v.	v.	ADP
ajlm-760	98	5	cholerae	cholerae	PROPN
ajlm-760	98	6	o1	o1	PROPN
ajlm-760	98	7	isolates	isolate	NOUN
ajlm-760	98	8	shows	show	VERB
ajlm-760	98	9	examples	example	NOUN
ajlm-760	98	10	of	of	ADP
ajlm-760	98	11	geographical	geographical	ADJ
ajlm-760	98	12	clustering	clustering	NOUN
ajlm-760	98	13	,	,	PUNCT
ajlm-760	98	14	as	as	SCONJ
ajlm-760	98	15	already	already	ADV
ajlm-760	98	16	described	describe	VERB
ajlm-760	98	17	above	above	ADV
ajlm-760	98	18	in	in	ADP
ajlm-760	98	19	the	the	DET
ajlm-760	98	20	mention	mention	NOUN
ajlm-760	98	21	of	of	ADP
ajlm-760	98	22	cameroonian	cameroonian	ADJ
ajlm-760	98	23	isolates	isolate	NOUN
ajlm-760	98	24	characteristic	characteristic	ADJ
ajlm-760	98	25	of	of	ADP
ajlm-760	98	26	the	the	DET
ajlm-760	98	27	lake	lake	PROPN
ajlm-760	98	28	chad	chad	PROPN
ajlm-760	98	29	basin	basin	PROPN
ajlm-760	98	30	region	region	NOUN
ajlm-760	98	31	;	;	PUNCT
ajlm-760	98	32	moore	moore	PROPN
ajlm-760	98	33	and	and	CCONJ
ajlm-760	98	34	coworkers72	coworkers72	NOUN
ajlm-760	98	35	found	find	VERB
ajlm-760	98	36	that	that	SCONJ
ajlm-760	98	37	isolates	isolate	NOUN
ajlm-760	98	38	from	from	ADP
ajlm-760	98	39	western	western	PROPN
ajlm-760	98	40	africa	africa	PROPN
ajlm-760	98	41	(	(	PUNCT
ajlm-760	98	42	togo	togo	PROPN
ajlm-760	98	43	and	and	CCONJ
ajlm-760	98	44	guinea	guinea	NOUN
ajlm-760	98	45	)	)	PUNCT
ajlm-760	98	46	form	form	VERB
ajlm-760	98	47	a	a	DET
ajlm-760	98	48	closely	closely	ADV
ajlm-760	98	49	related	relate	VERB
ajlm-760	98	50	group	group	NOUN
ajlm-760	98	51	which	which	PRON
ajlm-760	98	52	is	be	AUX
ajlm-760	98	53	separated	separate	VERB
ajlm-760	98	54	from	from	ADP
ajlm-760	98	55	a	a	DET
ajlm-760	98	56	distinctive	distinctive	ADJ
ajlm-760	98	57	cluster	cluster	NOUN
ajlm-760	98	58	associated	associate	VERB
ajlm-760	98	59	with	with	ADP
ajlm-760	98	60	the	the	DET
ajlm-760	98	61	african	african	ADJ
ajlm-760	98	62	great	great	ADJ
ajlm-760	98	63	lakes	lake	NOUN
ajlm-760	98	64	region	region	NOUN
ajlm-760	98	65	(	(	PUNCT
ajlm-760	98	66	democratic	democratic	ADJ
ajlm-760	98	67	republic	republic	NOUN
ajlm-760	98	68	of	of	ADP
ajlm-760	98	69	the	the	DET
ajlm-760	98	70	congo	congo	PROPN
ajlm-760	98	71	and	and	CCONJ
ajlm-760	98	72	zambia	zambia	PROPN
ajlm-760	98	73	)	)	PUNCT
ajlm-760	98	74	.	.	PUNCT
ajlm-760	99	1	smith	smith	PROPN
ajlm-760	99	2	and	and	CCONJ
ajlm-760	99	3	coworkers71	coworkers71	PROPN
ajlm-760	99	4	found	find	VERB
ajlm-760	99	5	that	that	SCONJ
ajlm-760	99	6	a	a	DET
ajlm-760	99	7	mozambican	mozambican	ADJ
ajlm-760	99	8	cluster	cluster	NOUN
ajlm-760	99	9	of	of	ADP
ajlm-760	99	10	isolates	isolate	NOUN
ajlm-760	99	11	was	be	AUX
ajlm-760	99	12	distinctly	distinctly	ADV
ajlm-760	99	13	different	different	ADJ
ajlm-760	99	14	(	(	PUNCT
ajlm-760	99	15	including	include	VERB
ajlm-760	99	16	a	a	DET
ajlm-760	99	17	different	different	ADJ
ajlm-760	99	18	antimicrobial	antimicrobial	ADJ
ajlm-760	99	19	resistance	resistance	NOUN
ajlm-760	99	20	profile	profile	NOUN
ajlm-760	99	21	)	)	PUNCT
ajlm-760	99	22	as	as	SCONJ
ajlm-760	99	23	compared	compare	VERB
ajlm-760	99	24	to	to	ADP
ajlm-760	99	25	isolates	isolate	NOUN
ajlm-760	99	26	from	from	ADP
ajlm-760	99	27	western	western	PROPN
ajlm-760	99	28	africa	africa	PROPN
ajlm-760	99	29	(	(	PUNCT
ajlm-760	99	30	togo	togo	PROPN
ajlm-760	99	31	,	,	PUNCT
ajlm-760	99	32	guinea	guinea	NOUN
ajlm-760	99	33	and	and	CCONJ
ajlm-760	99	34	côte	côte	PROPN
ajlm-760	99	35	d’ivoire	d’ivoire	NOUN
ajlm-760	99	36	)	)	PUNCT
ajlm-760	99	37	and	and	CCONJ
ajlm-760	99	38	central	central	PROPN
ajlm-760	99	39	africa	africa	PROPN
ajlm-760	99	40	(	(	PUNCT
ajlm-760	99	41	democratic	democratic	ADJ
ajlm-760	99	42	republic	republic	NOUN
ajlm-760	99	43	of	of	ADP
ajlm-760	99	44	the	the	DET
ajlm-760	99	45	congo	congo	NOUN
ajlm-760	99	46	)	)	PUNCT
ajlm-760	99	47	.	.	PUNCT
ajlm-760	100	1	shigella	shigella	PROPN
ajlm-760	100	2	species	species	PROPN
ajlm-760	100	3	shigella	shigella	PROPN
ajlm-760	100	4	dysenteriae	dysenteriae	NOUN
ajlm-760	100	5	was	be	AUX
ajlm-760	100	6	the	the	DET
ajlm-760	100	7	first	first	ADJ
ajlm-760	100	8	shigella	shigella	PROPN
ajlm-760	100	9	species	specie	NOUN
ajlm-760	100	10	in	in	ADP
ajlm-760	100	11	sub	sub	ADJ
ajlm-760	100	12	-	-	ADJ
ajlm-760	100	13	saharan	saharan	ADJ
ajlm-760	100	14	africa	africa	PROPN
ajlm-760	100	15	that	that	PRON
ajlm-760	100	16	was	be	AUX
ajlm-760	100	17	characterised	characterise	VERB
ajlm-760	100	18	by	by	ADP
ajlm-760	100	19	molecular	molecular	ADJ
ajlm-760	100	20	subtyping	subtyping	NOUN
ajlm-760	100	21	techniques	technique	NOUN
ajlm-760	100	22	;	;	PUNCT
ajlm-760	100	23	these	these	DET
ajlm-760	100	24	details	detail	NOUN
ajlm-760	100	25	were	be	AUX
ajlm-760	100	26	first	first	ADV
ajlm-760	100	27	documented	document	VERB
ajlm-760	100	28	in	in	ADP
ajlm-760	100	29	the	the	DET
ajlm-760	100	30	years	year	NOUN
ajlm-760	100	31	1996	1996	NUM
ajlm-760	100	32	and	and	CCONJ
ajlm-760	100	33	1997.6,74	1997.6,74	NUM
ajlm-760	100	34	in	in	ADP
ajlm-760	100	35	1996	1996	NUM
ajlm-760	100	36	,	,	PUNCT
ajlm-760	100	37	kariuki	kariuki	PROPN
ajlm-760	100	38	and	and	CCONJ
ajlm-760	100	39	coworkers6	coworkers6	NOUN
ajlm-760	100	40	documented	document	VERB
ajlm-760	100	41	an	an	DET
ajlm-760	100	42	outbreak	outbreak	NOUN
ajlm-760	100	43	of	of	ADP
ajlm-760	100	44	dysentery	dysentery	NOUN
ajlm-760	100	45	due	due	ADP
ajlm-760	100	46	to	to	ADP
ajlm-760	100	47	mdr	mdr	PROPN
ajlm-760	100	48	s.	s.	PROPN
ajlm-760	100	49	dysenteriae	dysenteriae	PROPN
ajlm-760	100	50	serotype	serotype	PROPN
ajlm-760	100	51	1	1	NUM
ajlm-760	100	52	in	in	ADP
ajlm-760	100	53	kenya	kenya	NOUN
ajlm-760	100	54	:	:	PUNCT
ajlm-760	100	55	all	all	DET
ajlm-760	100	56	22	22	NUM
ajlm-760	100	57	outbreak	outbreak	NOUN
ajlm-760	100	58	isolates	isolate	NOUN
ajlm-760	100	59	were	be	AUX
ajlm-760	100	60	resistant	resistant	ADJ
ajlm-760	100	61	to	to	ADP
ajlm-760	100	62	ampicillin	ampicillin	PROPN
ajlm-760	100	63	,	,	PUNCT
ajlm-760	100	64	chloramphenicol	chloramphenicol	NOUN
ajlm-760	100	65	,	,	PUNCT
ajlm-760	100	66	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	100	67	,	,	PUNCT
ajlm-760	100	68	trimethoprim	trimethoprim	NOUN
ajlm-760	100	69	,	,	PUNCT
ajlm-760	100	70	streptomycin	streptomycin	PROPN
ajlm-760	100	71	and	and	CCONJ
ajlm-760	100	72	tetracycline	tetracycline	NOUN
ajlm-760	100	73	;	;	PUNCT
ajlm-760	100	74	pfge	pfge	NOUN
ajlm-760	100	75	and	and	CCONJ
ajlm-760	100	76	plasmid	plasmid	ADJ
ajlm-760	100	77	profiling	profiling	NOUN
ajlm-760	100	78	showed	show	VERB
ajlm-760	100	79	clonality	clonality	NOUN
ajlm-760	100	80	among	among	ADP
ajlm-760	100	81	the	the	DET
ajlm-760	100	82	isolates	isolate	NOUN
ajlm-760	100	83	.	.	PUNCT
ajlm-760	101	1	in	in	ADP
ajlm-760	101	2	1997	1997	NUM
ajlm-760	101	3	,	,	PUNCT
ajlm-760	101	4	pillay	pillay	NOUN
ajlm-760	101	5	and	and	CCONJ
ajlm-760	101	6	coworkers74	coworkers74	NOUN
ajlm-760	101	7	documented	document	VERB
ajlm-760	101	8	a	a	DET
ajlm-760	101	9	nosocomial	nosocomial	ADJ
ajlm-760	101	10	outbreak	outbreak	NOUN
ajlm-760	101	11	of	of	ADP
ajlm-760	101	12	dysentery	dysentery	NOUN
ajlm-760	101	13	caused	cause	VERB
ajlm-760	101	14	by	by	ADP
ajlm-760	101	15	mdr	mdr	PROPN
ajlm-760	101	16	s.	s.	PROPN
ajlm-760	101	17	dysenteriae	dysenteriae	PROPN
ajlm-760	101	18	serotype	serotype	PROPN
ajlm-760	101	19	1	1	NUM
ajlm-760	101	20	which	which	PRON
ajlm-760	101	21	transpired	transpire	VERB
ajlm-760	101	22	in	in	ADP
ajlm-760	101	23	a	a	DET
ajlm-760	101	24	psychiatric	psychiatric	ADJ
ajlm-760	101	25	institution	institution	NOUN
ajlm-760	101	26	in	in	ADP
ajlm-760	101	27	south	south	PROPN
ajlm-760	101	28	africa	africa	PROPN
ajlm-760	101	29	.	.	PUNCT
ajlm-760	102	1	isolates	isolate	NOUN
ajlm-760	102	2	were	be	AUX
ajlm-760	102	3	resistant	resistant	ADJ
ajlm-760	102	4	to	to	ADP
ajlm-760	102	5	ampicillin	ampicillin	PROPN
ajlm-760	102	6	,	,	PUNCT
ajlm-760	102	7	chloramphenicol	chloramphenicol	NOUN
ajlm-760	102	8	,	,	PUNCT
ajlm-760	102	9	tetracycline	tetracycline	NOUN
ajlm-760	102	10	and	and	CCONJ
ajlm-760	102	11	cotrimoxazole	cotrimoxazole	NOUN
ajlm-760	102	12	;	;	PUNCT
ajlm-760	102	13	ribotyping	ribotype	VERB
ajlm-760	102	14	showed	show	VERB
ajlm-760	102	15	clonality	clonality	NOUN
ajlm-760	102	16	among	among	ADP
ajlm-760	102	17	the	the	DET
ajlm-760	102	18	isolates	isolate	NOUN
ajlm-760	102	19	.	.	PUNCT
ajlm-760	103	1	later	later	ADV
ajlm-760	103	2	in	in	ADP
ajlm-760	103	3	1996	1996	NUM
ajlm-760	103	4	,	,	PUNCT
ajlm-760	103	5	a	a	DET
ajlm-760	103	6	report	report	NOUN
ajlm-760	103	7	documented	document	VERB
ajlm-760	103	8	how	how	SCONJ
ajlm-760	103	9	pfge	pfge	NOUN
ajlm-760	103	10	analysis	analysis	NOUN
ajlm-760	103	11	was	be	AUX
ajlm-760	103	12	used	use	VERB
ajlm-760	103	13	to	to	PART
ajlm-760	103	14	investigate	investigate	VERB
ajlm-760	103	15	mdr	mdr	PROPN
ajlm-760	103	16	s.	s.	PROPN
ajlm-760	103	17	dysenteriae	dysenteriae	PROPN
ajlm-760	103	18	serotype	serotype	PROPN
ajlm-760	103	19	1	1	NUM
ajlm-760	103	20	isolates	isolate	NOUN
ajlm-760	103	21	associated	associate	VERB
ajlm-760	103	22	with	with	ADP
ajlm-760	103	23	two	two	NUM
ajlm-760	103	24	separate	separate	ADJ
ajlm-760	103	25	dysentery	dysentery	NOUN
ajlm-760	103	26	outbreaks	outbreak	NOUN
ajlm-760	103	27	in	in	ADP
ajlm-760	103	28	the	the	DET
ajlm-760	103	29	central	central	ADJ
ajlm-760	103	30	african	african	ADJ
ajlm-760	103	31	republic	republic	NOUN
ajlm-760	103	32	;	;	PUNCT
ajlm-760	103	33	pfge	pfge	NOUN
ajlm-760	103	34	analysis	analysis	NOUN
ajlm-760	103	35	provided	provide	VERB
ajlm-760	103	36	evidence	evidence	NOUN
ajlm-760	103	37	to	to	PART
ajlm-760	103	38	show	show	VERB
ajlm-760	103	39	that	that	SCONJ
ajlm-760	103	40	each	each	DET
ajlm-760	103	41	outbreak	outbreak	NOUN
ajlm-760	103	42	was	be	AUX
ajlm-760	103	43	associated	associate	VERB
ajlm-760	103	44	with	with	ADP
ajlm-760	103	45	a	a	DET
ajlm-760	103	46	different	different	ADJ
ajlm-760	103	47	clone.75	clone.75	NOUN
ajlm-760	103	48	in	in	ADP
ajlm-760	103	49	2009	2009	NUM
ajlm-760	103	50	,	,	PUNCT
ajlm-760	103	51	smith	smith	PROPN
ajlm-760	103	52	and	and	CCONJ
ajlm-760	103	53	coworkers76	coworkers76	PROPN
ajlm-760	103	54	reported	report	VERB
ajlm-760	103	55	a	a	DET
ajlm-760	103	56	cluster	cluster	NOUN
ajlm-760	103	57	of	of	ADP
ajlm-760	103	58	29	29	NUM
ajlm-760	103	59	watery	watery	ADJ
ajlm-760	103	60	diarrhoea	diarrhoea	NOUN
ajlm-760	103	61	cases	case	NOUN
ajlm-760	103	62	associated	associate	VERB
ajlm-760	103	63	with	with	ADP
ajlm-760	103	64	mdr	mdr	PROPN
ajlm-760	103	65	shigella	shigella	PROPN
ajlm-760	103	66	boydii	boydii	PROPN
ajlm-760	103	67	serotype	serotype	ADJ
ajlm-760	103	68	2	2	NUM
ajlm-760	103	69	isolates	isolate	NOUN
ajlm-760	103	70	in	in	ADP
ajlm-760	103	71	south	south	PROPN
ajlm-760	103	72	africa	africa	PROPN
ajlm-760	103	73	.	.	PUNCT
ajlm-760	104	1	isolates	isolate	NOUN
ajlm-760	104	2	were	be	AUX
ajlm-760	104	3	resistant	resistant	ADJ
ajlm-760	104	4	to	to	ADP
ajlm-760	104	5	ampicillin	ampicillin	PROPN
ajlm-760	104	6	,	,	PUNCT
ajlm-760	104	7	trimethoprim	trimethoprim	NOUN
ajlm-760	104	8	,	,	PUNCT
ajlm-760	104	9	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	104	10	and	and	CCONJ
ajlm-760	104	11	streptomycin	streptomycin	PROPN
ajlm-760	104	12	;	;	PUNCT
ajlm-760	104	13	pfge	pfge	NOUN
ajlm-760	104	14	analysis	analysis	NOUN
ajlm-760	104	15	showed	show	VERB
ajlm-760	104	16	clonality	clonality	NOUN
ajlm-760	104	17	among	among	ADP
ajlm-760	104	18	the	the	DET
ajlm-760	104	19	isolates	isolate	NOUN
ajlm-760	104	20	.	.	PUNCT
ajlm-760	105	1	more	more	ADV
ajlm-760	105	2	recent	recent	ADJ
ajlm-760	105	3	molecular	molecular	ADJ
ajlm-760	105	4	epidemiological	epidemiological	ADJ
ajlm-760	105	5	investigations	investigation	NOUN
ajlm-760	105	6	of	of	ADP
ajlm-760	105	7	shigella	shigella	PROPN
ajlm-760	105	8	species	specie	NOUN
ajlm-760	105	9	in	in	ADP
ajlm-760	105	10	sub	sub	ADJ
ajlm-760	105	11	-	-	ADJ
ajlm-760	105	12	saharan	saharan	ADJ
ajlm-760	105	13	africa	africa	PROPN
ajlm-760	105	14	has	have	AUX
ajlm-760	105	15	involved	involve	VERB
ajlm-760	105	16	wgs	wgs	NOUN
ajlm-760	105	17	-	-	PUNCT
ajlm-760	105	18	snp	snp	NOUN
ajlm-760	105	19	analysis	analysis	NOUN
ajlm-760	105	20	of	of	ADP
ajlm-760	105	21	isolates	isolate	NOUN
ajlm-760	105	22	.	.	PUNCT
ajlm-760	106	1	connor	connor	NOUN
ajlm-760	106	2	and	and	CCONJ
ajlm-760	106	3	coworkers77	coworkers77	PROPN
ajlm-760	106	4	used	use	VERB
ajlm-760	106	5	wgs	wgs	NOUN
ajlm-760	106	6	-	-	PUNCT
ajlm-760	106	7	snp	snp	NOUN
ajlm-760	106	8	analysis	analysis	NOUN
ajlm-760	106	9	to	to	PART
ajlm-760	106	10	investigate	investigate	VERB
ajlm-760	106	11	351	351	NUM
ajlm-760	106	12	global	global	ADJ
ajlm-760	106	13	(	(	PUNCT
ajlm-760	106	14	including	include	VERB
ajlm-760	106	15	africa	africa	PROPN
ajlm-760	106	16	)	)	PUNCT
ajlm-760	106	17	isolates	isolate	NOUN
ajlm-760	106	18	of	of	ADP
ajlm-760	106	19	shigella	shigella	PROPN
ajlm-760	106	20	flexneri	flexneri	PROPN
ajlm-760	106	21	,	,	PUNCT
ajlm-760	106	22	to	to	PART
ajlm-760	106	23	show	show	VERB
ajlm-760	106	24	that	that	SCONJ
ajlm-760	106	25	s.	s.	PROPN
ajlm-760	106	26	flexneri	flexneri	PROPN
ajlm-760	106	27	is	be	AUX
ajlm-760	106	28	composed	compose	VERB
ajlm-760	106	29	of	of	ADP
ajlm-760	106	30	seven	seven	NUM
ajlm-760	106	31	distinct	distinct	ADJ
ajlm-760	106	32	phylogenetic	phylogenetic	ADJ
ajlm-760	106	33	groups	group	NOUN
ajlm-760	106	34	.	.	PUNCT
ajlm-760	107	1	each	each	DET
ajlm-760	107	2	phylogenetic	phylogenetic	ADJ
ajlm-760	107	3	group	group	NOUN
ajlm-760	107	4	contains	contain	VERB
ajlm-760	107	5	geographically	geographically	ADV
ajlm-760	107	6	restricted	restrict	VERB
ajlm-760	107	7	sub	sub	NOUN
ajlm-760	107	8	-	-	NOUN
ajlm-760	107	9	lineages	lineage	NOUN
ajlm-760	107	10	that	that	PRON
ajlm-760	107	11	seem	seem	VERB
ajlm-760	107	12	to	to	PART
ajlm-760	107	13	have	have	AUX
ajlm-760	107	14	constantly	constantly	ADV
ajlm-760	107	15	inhabited	inhabit	VERB
ajlm-760	107	16	areas	area	NOUN
ajlm-760	107	17	for	for	ADP
ajlm-760	107	18	several	several	ADJ
ajlm-760	107	19	decades	decade	NOUN
ajlm-760	107	20	;	;	PUNCT
ajlm-760	107	21	there	there	PRON
ajlm-760	107	22	is	be	VERB
ajlm-760	107	23	limited	limited	ADJ
ajlm-760	107	24	evidence	evidence	NOUN
ajlm-760	107	25	of	of	ADP
ajlm-760	107	26	intercontinental	intercontinental	ADJ
ajlm-760	107	27	transmission	transmission	NOUN
ajlm-760	107	28	.	.	PUNCT
ajlm-760	108	1	antimicrobial	antimicrobial	ADJ
ajlm-760	108	2	resistance	resistance	NOUN
ajlm-760	108	3	determinants	determinant	NOUN
ajlm-760	108	4	have	have	AUX
ajlm-760	108	5	been	be	AUX
ajlm-760	108	6	acquired	acquire	VERB
ajlm-760	108	7	and	and	CCONJ
ajlm-760	108	8	maintained	maintain	VERB
ajlm-760	108	9	locally	locally	ADV
ajlm-760	108	10	on	on	ADP
ajlm-760	108	11	several	several	ADJ
ajlm-760	108	12	episodes	episode	NOUN
ajlm-760	108	13	–	–	PUNCT
ajlm-760	108	14	to	to	PART
ajlm-760	108	15	summarise	summarise	VERB
ajlm-760	108	16	,	,	PUNCT
ajlm-760	108	17	s.	s.	PROPN
ajlm-760	108	18	flexneri	flexneri	PROPN
ajlm-760	108	19	from	from	ADP
ajlm-760	108	20	sub	sub	ADJ
ajlm-760	108	21	-	-	ADJ
ajlm-760	108	22	saharan	saharan	ADJ
ajlm-760	108	23	africa	africa	PROPN
ajlm-760	108	24	cluster	cluster	NOUN
ajlm-760	108	25	together	together	ADV
ajlm-760	108	26	and	and	CCONJ
ajlm-760	108	27	form	form	VERB
ajlm-760	108	28	a	a	DET
ajlm-760	108	29	distinct	distinct	ADJ
ajlm-760	108	30	lineage	lineage	NOUN
ajlm-760	108	31	as	as	ADP
ajlm-760	108	32	compared	compare	VERB
ajlm-760	108	33	to	to	ADP
ajlm-760	108	34	lineages	lineage	NOUN
ajlm-760	108	35	from	from	ADP
ajlm-760	108	36	other	other	ADJ
ajlm-760	108	37	parts	part	NOUN
ajlm-760	108	38	of	of	ADP
ajlm-760	108	39	the	the	DET
ajlm-760	108	40	world	world	NOUN
ajlm-760	108	41	.	.	PUNCT
ajlm-760	109	1	njamkepo	njamkepo	NOUN
ajlm-760	109	2	and	and	CCONJ
ajlm-760	109	3	coworkers78	coworkers78	ADV
ajlm-760	109	4	used	use	VERB
ajlm-760	109	5	wgs	wgs	NOUN
ajlm-760	109	6	-	-	PUNCT
ajlm-760	109	7	snp	snp	NOUN
ajlm-760	109	8	analysis	analysis	NOUN
ajlm-760	109	9	to	to	PART
ajlm-760	109	10	investigate	investigate	VERB
ajlm-760	109	11	331	331	NUM
ajlm-760	109	12	global	global	ADJ
ajlm-760	109	13	(	(	PUNCT
ajlm-760	109	14	including	include	VERB
ajlm-760	109	15	africa	africa	PROPN
ajlm-760	109	16	)	)	PUNCT
ajlm-760	109	17	isolates	isolate	NOUN
ajlm-760	109	18	of	of	ADP
ajlm-760	109	19	s.	s.	PROPN
ajlm-760	109	20	dysenteriae	dysenteriae	PROPN
ajlm-760	109	21	serotype	serotype	PROPN
ajlm-760	109	22	1	1	NUM
ajlm-760	109	23	,	,	PUNCT
ajlm-760	109	24	to	to	PART
ajlm-760	109	25	show	show	VERB
ajlm-760	109	26	that	that	SCONJ
ajlm-760	109	27	s.	s.	PROPN
ajlm-760	109	28	dysenteriae	dysenteriae	PROPN
ajlm-760	109	29	serotype	serotype	PROPN
ajlm-760	109	30	1	1	NUM
ajlm-760	109	31	is	be	AUX
ajlm-760	109	32	composed	compose	VERB
ajlm-760	109	33	of	of	ADP
ajlm-760	109	34	four	four	NUM
ajlm-760	109	35	distinct	distinct	ADJ
ajlm-760	109	36	lineages	lineage	NOUN
ajlm-760	109	37	.	.	PUNCT
ajlm-760	110	1	lineage	lineage	NOUN
ajlm-760	110	2	iv	iv	NUM
ajlm-760	110	3	contains	contain	VERB
ajlm-760	110	4	most	most	ADJ
ajlm-760	110	5	of	of	ADP
ajlm-760	110	6	the	the	DET
ajlm-760	110	7	recent	recent	ADJ
ajlm-760	110	8	(	(	PUNCT
ajlm-760	110	9	last	last	ADJ
ajlm-760	110	10	few	few	ADJ
ajlm-760	110	11	decades	decade	NOUN
ajlm-760	110	12	)	)	PUNCT
ajlm-760	110	13	isolates	isolate	NOUN
ajlm-760	110	14	from	from	ADP
ajlm-760	110	15	africa	africa	PROPN
ajlm-760	110	16	and	and	CCONJ
ajlm-760	110	17	the	the	DET
ajlm-760	110	18	indian	indian	PROPN
ajlm-760	110	19	subcontinent	subcontinent	PROPN
ajlm-760	110	20	;	;	PUNCT
ajlm-760	110	21	lineage	lineage	NOUN
ajlm-760	110	22	iv	iv	NUM
ajlm-760	110	23	has	have	AUX
ajlm-760	110	24	been	be	AUX
ajlm-760	110	25	transmitted	transmit	VERB
ajlm-760	110	26	in	in	ADP
ajlm-760	110	27	several	several	ADJ
ajlm-760	110	28	waves	wave	NOUN
ajlm-760	110	29	to	to	ADP
ajlm-760	110	30	africa	africa	PROPN
ajlm-760	110	31	;	;	PUNCT
ajlm-760	110	32	most	most	ADV
ajlm-760	110	33	recent	recent	ADJ
ajlm-760	110	34	(	(	PUNCT
ajlm-760	110	35	since	since	SCONJ
ajlm-760	110	36	1990	1990	NUM
ajlm-760	110	37	)	)	PUNCT
ajlm-760	110	38	outbreaks	outbreak	NOUN
ajlm-760	110	39	in	in	ADP
ajlm-760	110	40	africa	africa	PROPN
ajlm-760	110	41	have	have	AUX
ajlm-760	110	42	been	be	AUX
ajlm-760	110	43	caused	cause	VERB
ajlm-760	110	44	by	by	ADP
ajlm-760	110	45	this	this	DET
ajlm-760	110	46	lineage	lineage	NOUN
ajlm-760	110	47	iv	iv	ADP
ajlm-760	110	48	;	;	PUNCT
ajlm-760	110	49	compared	compare	VERB
ajlm-760	110	50	to	to	ADP
ajlm-760	110	51	other	other	ADJ
ajlm-760	110	52	lineages	lineage	NOUN
ajlm-760	110	53	,	,	PUNCT
ajlm-760	110	54	lineage	lineage	NOUN
ajlm-760	110	55	iv	iv	NUM
ajlm-760	110	56	show	show	VERB
ajlm-760	110	57	antimicrobial	antimicrobial	ADJ
ajlm-760	110	58	resistance	resistance	NOUN
ajlm-760	110	59	including	include	VERB
ajlm-760	110	60	mdr	mdr	PROPN
ajlm-760	110	61	.	.	PROPN
ajlm-760	110	62	escherichia	escherichia	NOUN
ajlm-760	110	63	coli	coli	NOUN
ajlm-760	110	64	surprisingly	surprisingly	ADV
ajlm-760	110	65	very	very	ADV
ajlm-760	110	66	little	little	ADJ
ajlm-760	110	67	published	publish	VERB
ajlm-760	110	68	data	datum	NOUN
ajlm-760	110	69	exist	exist	VERB
ajlm-760	110	70	concerning	concern	VERB
ajlm-760	110	71	molecular	molecular	ADJ
ajlm-760	110	72	epidemiological	epidemiological	ADJ
ajlm-760	110	73	investigation	investigation	NOUN
ajlm-760	110	74	of	of	ADP
ajlm-760	110	75	outbreaks	outbreak	NOUN
ajlm-760	110	76	in	in	ADP
ajlm-760	110	77	sub	sub	ADJ
ajlm-760	110	78	-	-	ADJ
ajlm-760	110	79	saharan	saharan	ADJ
ajlm-760	110	80	africa	africa	PROPN
ajlm-760	110	81	caused	cause	VERB
ajlm-760	110	82	by	by	ADP
ajlm-760	110	83	e.	e.	PROPN
ajlm-760	110	84	coli	coli	NOUN
ajlm-760	110	85	enteric	enteric	NOUN
ajlm-760	110	86	pathogens	pathogen	NOUN
ajlm-760	110	87	(	(	PUNCT
ajlm-760	110	88	diarrhoeagenic	diarrhoeagenic	ADJ
ajlm-760	110	89	e.	e.	PROPN
ajlm-760	110	90	coli	coli	PROPN
ajlm-760	110	91	)	)	PUNCT
ajlm-760	110	92	.	.	PUNCT
ajlm-760	111	1	diarrhoeagenic	diarrhoeagenic	PROPN
ajlm-760	111	2	e.	e.	PROPN
ajlm-760	111	3	coli	coli	PROPN
ajlm-760	111	4	includes	include	VERB
ajlm-760	111	5	the	the	DET
ajlm-760	111	6	following	follow	VERB
ajlm-760	111	7	six	six	NUM
ajlm-760	111	8	main	main	ADJ
ajlm-760	111	9	categories	category	NOUN
ajlm-760	111	10	:	:	PUNCT
ajlm-760	111	11	shiga	shiga	ADJ
ajlm-760	111	12	-	-	PUNCT
ajlm-760	111	13	toxin	toxin	NOUN
ajlm-760	111	14	producing	produce	VERB
ajlm-760	111	15	e.	e.	PROPN
ajlm-760	111	16	coli	coli	PROPN
ajlm-760	111	17	(	(	PUNCT
ajlm-760	111	18	which	which	PRON
ajlm-760	111	19	includes	include	VERB
ajlm-760	111	20	the	the	DET
ajlm-760	111	21	enterohaemorrhagic	enterohaemorrhagic	PROPN
ajlm-760	111	22	e.	e.	PROPN
ajlm-760	111	23	coli	coli	PROPN
ajlm-760	111	24	)	)	PUNCT
ajlm-760	111	25	,	,	PUNCT
ajlm-760	111	26	enteropathogenic	enteropathogenic	ADJ
ajlm-760	111	27	e.	e.	PROPN
ajlm-760	111	28	coli	coli	PROPN
ajlm-760	111	29	,	,	PUNCT
ajlm-760	111	30	enteroinvasive	enteroinvasive	PROPN
ajlm-760	111	31	e.	e.	PROPN
ajlm-760	111	32	coli	coli	PROPN
ajlm-760	111	33	,	,	PUNCT
ajlm-760	111	34	enterotoxigenic	enterotoxigenic	ADJ
ajlm-760	111	35	e.	e.	PROPN
ajlm-760	111	36	coli	coli	PROPN
ajlm-760	111	37	,	,	PUNCT
ajlm-760	111	38	enteroaggregative	enteroaggregative	ADJ
ajlm-760	111	39	e.	e.	PROPN
ajlm-760	111	40	coli	coli	PROPN
ajlm-760	111	41	and	and	CCONJ
ajlm-760	111	42	diffusely	diffusely	ADV
ajlm-760	111	43	adherent	adherent	ADJ
ajlm-760	111	44	e.	e.	PROPN
ajlm-760	111	45	coli	coli	PROPN
ajlm-760	111	46	.	.	PUNCT
ajlm-760	112	1	in	in	ADP
ajlm-760	112	2	2003	2003	NUM
ajlm-760	112	3	,	,	PUNCT
ajlm-760	112	4	okeke	okeke	ADJ
ajlm-760	112	5	and	and	CCONJ
ajlm-760	112	6	coworkers79	coworkers79	NOUN
ajlm-760	112	7	reported	report	VERB
ajlm-760	112	8	on	on	ADP
ajlm-760	112	9	the	the	DET
ajlm-760	112	10	etiology	etiology	NOUN
ajlm-760	112	11	of	of	ADP
ajlm-760	112	12	acute	acute	ADJ
ajlm-760	112	13	diarrhoea	diarrhoea	NOUN
ajlm-760	112	14	in	in	ADP
ajlm-760	112	15	adults	adult	NOUN
ajlm-760	112	16	in	in	ADP
ajlm-760	112	17	nigeria	nigeria	PROPN
ajlm-760	112	18	:	:	PUNCT
ajlm-760	112	19	shiga	shiga	ADJ
ajlm-760	112	20	-	-	PUNCT
ajlm-760	112	21	toxin	toxin	NOUN
ajlm-760	112	22	producing	produce	VERB
ajlm-760	112	23	e.	e.	PROPN
ajlm-760	112	24	coli	coli	NOUN
ajlm-760	112	25	and	and	CCONJ
ajlm-760	112	26	enteroaggregative	enteroaggregative	ADJ
ajlm-760	112	27	e.	e.	PROPN
ajlm-760	112	28	coli	coli	PROPN
ajlm-760	112	29	were	be	AUX
ajlm-760	112	30	significantly	significantly	ADV
ajlm-760	112	31	associated	associate	VERB
ajlm-760	112	32	with	with	ADP
ajlm-760	112	33	the	the	DET
ajlm-760	112	34	diarrhoea	diarrhoea	NOUN
ajlm-760	112	35	.	.	PUNCT
ajlm-760	113	1	pfge	pfge	NOUN
ajlm-760	113	2	analysis	analysis	NOUN
ajlm-760	113	3	of	of	ADP
ajlm-760	113	4	shiga	shiga	ADJ
ajlm-760	113	5	-	-	PUNCT
ajlm-760	113	6	toxin	toxin	NOUN
ajlm-760	113	7	producing	produce	VERB
ajlm-760	113	8	e.	e.	PROPN
ajlm-760	113	9	coli	coli	NOUN
ajlm-760	113	10	isolates	isolate	NOUN
ajlm-760	113	11	provided	provide	VERB
ajlm-760	113	12	evidence	evidence	NOUN
ajlm-760	113	13	to	to	PART
ajlm-760	113	14	suggest	suggest	VERB
ajlm-760	113	15	that	that	SCONJ
ajlm-760	113	16	an	an	DET
ajlm-760	113	17	outbreak	outbreak	NOUN
ajlm-760	113	18	had	have	AUX
ajlm-760	113	19	occurred	occur	VERB
ajlm-760	113	20	.	.	PUNCT
ajlm-760	114	1	in	in	ADP
ajlm-760	114	2	2012	2012	NUM
ajlm-760	114	3	,	,	PUNCT
ajlm-760	114	4	tau	tau	PROPN
ajlm-760	114	5	and	and	CCONJ
ajlm-760	114	6	coworkers80	coworkers80	NOUN
ajlm-760	114	7	reported	report	VERB
ajlm-760	114	8	on	on	ADP
ajlm-760	114	9	the	the	DET
ajlm-760	114	10	characterisation	characterisation	NOUN
ajlm-760	114	11	of	of	ADP
ajlm-760	114	12	e.	e.	PROPN
ajlm-760	114	13	coli	coli	PROPN
ajlm-760	114	14	o104	o104	PROPN
ajlm-760	115	1	isolates	isolate	NOUN
ajlm-760	115	2	from	from	ADP
ajlm-760	115	3	south	south	PROPN
ajlm-760	115	4	africa	africa	PROPN
ajlm-760	115	5	for	for	ADP
ajlm-760	115	6	the	the	DET
ajlm-760	115	7	years	year	NOUN
ajlm-760	115	8	2004–2011	2004–2011	NUM
ajlm-760	115	9	.	.	PUNCT
ajlm-760	116	1	this	this	DET
ajlm-760	116	2	study	study	NOUN
ajlm-760	116	3	was	be	AUX
ajlm-760	116	4	undertaken	undertake	VERB
ajlm-760	116	5	in	in	ADP
ajlm-760	116	6	response	response	NOUN
ajlm-760	116	7	to	to	ADP
ajlm-760	116	8	the	the	DET
ajlm-760	116	9	2011	2011	NUM
ajlm-760	116	10	outbreak	outbreak	NOUN
ajlm-760	116	11	of	of	ADP
ajlm-760	116	12	bloody	bloody	ADJ
ajlm-760	116	13	diarrhoea	diarrhoea	NOUN
ajlm-760	116	14	and	and	CCONJ
ajlm-760	116	15	haemolytic	haemolytic	ADJ
ajlm-760	116	16	uraemic	uraemic	ADJ
ajlm-760	116	17	syndrome	syndrome	NOUN
ajlm-760	116	18	which	which	PRON
ajlm-760	116	19	occurred	occur	VERB
ajlm-760	116	20	in	in	ADP
ajlm-760	116	21	germany	germany	PROPN
ajlm-760	116	22	,	,	PUNCT
ajlm-760	116	23	caused	cause	VERB
ajlm-760	116	24	by	by	ADP
ajlm-760	116	25	an	an	DET
ajlm-760	116	26	enteroaggregative	enteroaggregative	ADJ
ajlm-760	116	27	shiga	shiga	ADJ
ajlm-760	116	28	-	-	PUNCT
ajlm-760	116	29	toxin	toxin	NOUN
ajlm-760	116	30	producing	produce	VERB
ajlm-760	116	31	e.	e.	PROPN
ajlm-760	116	32	coli	coli	NOUN
ajlm-760	116	33	o104	o104	PROPN
ajlm-760	116	34	:	:	PUNCT
ajlm-760	116	35	h481	h481	PROPN
ajlm-760	116	36	.	.	PUNCT
ajlm-760	117	1	the	the	DET
ajlm-760	117	2	south	south	ADJ
ajlm-760	117	3	african	african	ADJ
ajlm-760	117	4	investigation	investigation	NOUN
ajlm-760	117	5	found	find	VERB
ajlm-760	117	6	two	two	NUM
ajlm-760	117	7	antimicrobial	antimicrobial	ADJ
ajlm-760	117	8	-	-	PUNCT
ajlm-760	117	9	susceptible	susceptible	ADJ
ajlm-760	117	10	enteropathogenic	enteropathogenic	ADJ
ajlm-760	117	11	e.	e.	PROPN
ajlm-760	117	12	coli	coli	NOUN
ajlm-760	117	13	o104	o104	PROPN
ajlm-760	118	1	:	:	PUNCT
ajlm-760	119	1	non	non	ADJ
ajlm-760	119	2	-	-	ADJ
ajlm-760	119	3	h4	h4	ADJ
ajlm-760	119	4	isolates	isolate	NOUN
ajlm-760	119	5	and	and	CCONJ
ajlm-760	119	6	five	five	NUM
ajlm-760	119	7	enteroaggregative	enteroaggregative	ADJ
ajlm-760	119	8	e.	e.	PROPN
ajlm-760	119	9	coli	coli	PROPN
ajlm-760	119	10	o104	o104	PROPN
ajlm-760	119	11	:	:	PUNCT
ajlm-760	119	12	h4	h4	NOUN
ajlm-760	119	13	isolates	isolate	NOUN
ajlm-760	119	14	(	(	PUNCT
ajlm-760	119	15	showing	show	VERB
ajlm-760	119	16	resistance	resistance	NOUN
ajlm-760	119	17	to	to	ADP
ajlm-760	119	18	ampicillin	ampicillin	PROPN
ajlm-760	119	19	,	,	PUNCT
ajlm-760	119	20	sulphamethoxazole	sulphamethoxazole	NOUN
ajlm-760	119	21	and	and	CCONJ
ajlm-760	119	22	trimethoprim	trimethoprim	NOUN
ajlm-760	119	23	)	)	PUNCT
ajlm-760	119	24	.	.	PUNCT
ajlm-760	120	1	pulsed	pulse	VERB
ajlm-760	120	2	-	-	PUNCT
ajlm-760	120	3	field	field	NOUN
ajlm-760	120	4	gel	gel	NOUN
ajlm-760	120	5	electrophoresis	electrophoresis	NOUN
ajlm-760	120	6	analysis	analysis	NOUN
ajlm-760	120	7	showed	show	VERB
ajlm-760	120	8	that	that	SCONJ
ajlm-760	120	9	these	these	DET
ajlm-760	120	10	south	south	ADJ
ajlm-760	120	11	african	african	ADJ
ajlm-760	120	12	isolates	isolate	NOUN
ajlm-760	120	13	were	be	AUX
ajlm-760	120	14	unrelated	unrelated	ADJ
ajlm-760	120	15	to	to	ADP
ajlm-760	120	16	the	the	DET
ajlm-760	120	17	germany	germany	PROPN
ajlm-760	120	18	outbreak	outbreak	NOUN
ajlm-760	120	19	strain	strain	VERB
ajlm-760	120	20	.	.	PUNCT
ajlm-760	121	1	conclusion	conclusion	NOUN
ajlm-760	121	2	whole	whole	ADJ
ajlm-760	121	3	-	-	PUNCT
ajlm-760	121	4	genome	genome	NOUN
ajlm-760	121	5	sequencing	sequencing	NOUN
ajlm-760	121	6	is	be	AUX
ajlm-760	121	7	undoubtedly	undoubtedly	ADV
ajlm-760	121	8	the	the	DET
ajlm-760	121	9	way	way	NOUN
ajlm-760	121	10	forward	forward	ADV
ajlm-760	121	11	for	for	ADP
ajlm-760	121	12	investigation	investigation	NOUN
ajlm-760	121	13	of	of	ADP
ajlm-760	121	14	enteric	enteric	ADJ
ajlm-760	121	15	pathogens	pathogen	NOUN
ajlm-760	121	16	in	in	ADP
ajlm-760	121	17	diagnostic	diagnostic	ADJ
ajlm-760	121	18	and	and	CCONJ
ajlm-760	121	19	public	public	ADJ
ajlm-760	121	20	health	health	NOUN
ajlm-760	121	21	laboratories	laboratory	NOUN
ajlm-760	121	22	.	.	PUNCT
ajlm-760	122	1	numerous	numerous	ADJ
ajlm-760	122	2	publications	publication	NOUN
ajlm-760	122	3	have	have	AUX
ajlm-760	122	4	analysed	analyse	VERB
ajlm-760	122	5	data	data	NOUN
ajlm-760	122	6	sets	set	NOUN
ajlm-760	122	7	to	to	PART
ajlm-760	122	8	compare	compare	VERB
ajlm-760	122	9	results	result	NOUN
ajlm-760	122	10	obtained	obtain	VERB
ajlm-760	122	11	using	use	VERB
ajlm-760	122	12	old	old	ADJ
ajlm-760	122	13	-	-	PUNCT
ajlm-760	122	14	fashioned	fashioned	ADJ
ajlm-760	122	15	molecular	molecular	ADJ
ajlm-760	122	16	subtyping	subtyping	NOUN
ajlm-760	122	17	methodologies	methodology	NOUN
ajlm-760	122	18	versus	versus	ADP
ajlm-760	122	19	results	result	NOUN
ajlm-760	122	20	obtained	obtain	VERB
ajlm-760	122	21	using	use	VERB
ajlm-760	122	22	newer	new	ADJ
ajlm-760	122	23	wgs	wgs	NOUN
ajlm-760	122	24	analysis	analysis	NOUN
ajlm-760	122	25	methodologies.14,82,83,84	methodologies.14,82,83,84	PROPN
ajlm-760	122	26	conclusions	conclusion	NOUN
ajlm-760	122	27	from	from	ADP
ajlm-760	122	28	these	these	DET
ajlm-760	122	29	studies	study	NOUN
ajlm-760	122	30	are	be	AUX
ajlm-760	122	31	unanimous	unanimous	ADJ
ajlm-760	122	32	and	and	CCONJ
ajlm-760	122	33	convincing	convincing	ADJ
ajlm-760	122	34	,	,	PUNCT
ajlm-760	122	35	in	in	SCONJ
ajlm-760	122	36	that	that	DET
ajlm-760	122	37	wgs	wgs	NOUN
ajlm-760	122	38	trumps	trump	VERB
ajlm-760	122	39	all	all	DET
ajlm-760	122	40	other	other	ADJ
ajlm-760	122	41	methodologies	methodology	NOUN
ajlm-760	122	42	.	.	PUNCT
ajlm-760	123	1	old	old	ADJ
ajlm-760	123	2	-	-	PUNCT
ajlm-760	123	3	fashioned	fashioned	ADJ
ajlm-760	123	4	methodologies	methodology	NOUN
ajlm-760	123	5	offer	offer	VERB
ajlm-760	123	6	limited	limited	ADJ
ajlm-760	123	7	genetic	genetic	ADJ
ajlm-760	123	8	resolution	resolution	NOUN
ajlm-760	123	9	and	and	CCONJ
ajlm-760	123	10	limited	limited	ADJ
ajlm-760	123	11	discriminatory	discriminatory	ADJ
ajlm-760	123	12	ability	ability	NOUN
ajlm-760	123	13	and	and	CCONJ
ajlm-760	123	14	there	there	PRON
ajlm-760	123	15	can	can	AUX
ajlm-760	123	16	sometimes	sometimes	ADV
ajlm-760	123	17	be	be	AUX
ajlm-760	123	18	a	a	DET
ajlm-760	123	19	lack	lack	NOUN
ajlm-760	123	20	of	of	ADP
ajlm-760	123	21	accuracy	accuracy	NOUN
ajlm-760	123	22	;	;	PUNCT
ajlm-760	123	23	all	all	DET
ajlm-760	123	24	these	these	DET
ajlm-760	123	25	hinder	hinder	NOUN
ajlm-760	123	26	epidemiologic	epidemiologic	ADJ
ajlm-760	123	27	investigations	investigation	NOUN
ajlm-760	123	28	.	.	PUNCT
ajlm-760	124	1	for	for	ADP
ajlm-760	124	2	example	example	NOUN
ajlm-760	124	3	,	,	PUNCT
ajlm-760	124	4	data	datum	NOUN
ajlm-760	124	5	from	from	ADP
ajlm-760	124	6	old	old	ADJ
ajlm-760	124	7	-	-	PUNCT
ajlm-760	124	8	fashioned	fashioned	ADJ
ajlm-760	124	9	methodologies	methodology	NOUN
ajlm-760	124	10	can	can	AUX
ajlm-760	124	11	incorrectly	incorrectly	ADV
ajlm-760	124	12	conclude	conclude	VERB
ajlm-760	124	13	that	that	SCONJ
ajlm-760	124	14	unrelated	unrelated	ADJ
ajlm-760	124	15	isolates	isolate	NOUN
ajlm-760	124	16	are	be	AUX
ajlm-760	124	17	indistinguishable	indistinguishable	ADJ
ajlm-760	124	18	,	,	PUNCT
ajlm-760	124	19	resulting	result	VERB
ajlm-760	124	20	in	in	ADP
ajlm-760	124	21	false	false	ADJ
ajlm-760	124	22	alerts	alert	NOUN
ajlm-760	124	23	and	and	CCONJ
ajlm-760	124	24	unnecessary	unnecessary	ADJ
ajlm-760	124	25	investigations	investigation	NOUN
ajlm-760	124	26	.	.	PUNCT
ajlm-760	125	1	whole	whole	ADJ
ajlm-760	125	2	-	-	PUNCT
ajlm-760	125	3	genome	genome	NOUN
ajlm-760	125	4	sequencing	sequencing	NOUN
ajlm-760	125	5	provides	provide	VERB
ajlm-760	125	6	a	a	DET
ajlm-760	125	7	supreme	supreme	ADJ
ajlm-760	125	8	unparalleled	unparalleled	ADJ
ajlm-760	125	9	discriminatory	discriminatory	ADJ
ajlm-760	125	10	ability	ability	NOUN
ajlm-760	125	11	,	,	PUNCT
ajlm-760	125	12	can	can	AUX
ajlm-760	125	13	reflect	reflect	VERB
ajlm-760	125	14	phylogeny	phylogeny	NOUN
ajlm-760	125	15	and	and	CCONJ
ajlm-760	125	16	can	can	AUX
ajlm-760	125	17	provide	provide	VERB
ajlm-760	125	18	an	an	DET
ajlm-760	125	19	evolutionary	evolutionary	ADJ
ajlm-760	125	20	context	context	NOUN
ajlm-760	125	21	.	.	PUNCT
ajlm-760	126	1	in	in	ADP
ajlm-760	126	2	addition	addition	NOUN
ajlm-760	126	3	,	,	PUNCT
ajlm-760	126	4	wgs	wgs	NOUN
ajlm-760	126	5	can	can	AUX
ajlm-760	126	6	provide	provide	VERB
ajlm-760	126	7	valuable	valuable	ADJ
ajlm-760	126	8	information	information	NOUN
ajlm-760	126	9	related	relate	VERB
ajlm-760	126	10	to	to	ADP
ajlm-760	126	11	genetic	genetic	ADJ
ajlm-760	126	12	determinants	determinant	NOUN
ajlm-760	126	13	conferring	confer	VERB
ajlm-760	126	14	antimicrobial	antimicrobial	ADJ
ajlm-760	126	15	resistance	resistance	NOUN
ajlm-760	126	16	.	.	PUNCT
ajlm-760	127	1	numerous	numerous	ADJ
ajlm-760	127	2	publications	publication	NOUN
ajlm-760	127	3	have	have	AUX
ajlm-760	127	4	reported	report	VERB
ajlm-760	127	5	how	how	SCONJ
ajlm-760	127	6	analysis	analysis	NOUN
ajlm-760	127	7	of	of	ADP
ajlm-760	127	8	wgs	wgs	NOUN
ajlm-760	127	9	data	datum	NOUN
ajlm-760	127	10	can	can	AUX
ajlm-760	127	11	be	be	AUX
ajlm-760	127	12	used	use	VERB
ajlm-760	127	13	to	to	PART
ajlm-760	127	14	infer	infer	VERB
ajlm-760	127	15	antimicrobial	antimicrobial	ADJ
ajlm-760	127	16	resistance	resistance	NOUN
ajlm-760	127	17	in	in	ADP
ajlm-760	127	18	bacterial	bacterial	ADJ
ajlm-760	127	19	pathogens;85,86,87,88,89	pathogens;85,86,87,88,89	NUM
ajlm-760	127	20	these	these	DET
ajlm-760	127	21	studies	study	NOUN
ajlm-760	127	22	have	have	AUX
ajlm-760	127	23	reported	report	VERB
ajlm-760	127	24	high	high	ADJ
ajlm-760	127	25	concordance	concordance	NOUN
ajlm-760	127	26	between	between	ADP
ajlm-760	127	27	wgs	wgs	NOUN
ajlm-760	127	28	resistance	resistance	NOUN
ajlm-760	127	29	predictions	prediction	NOUN
ajlm-760	127	30	and	and	CCONJ
ajlm-760	127	31	conventional	conventional	ADJ
ajlm-760	127	32	phenotypic	phenotypic	ADJ
ajlm-760	127	33	antimicrobial	antimicrobial	ADJ
ajlm-760	127	34	susceptibility	susceptibility	NOUN
ajlm-760	127	35	testing	testing	NOUN
ajlm-760	127	36	methodologies	methodology	NOUN
ajlm-760	127	37	.	.	PUNCT
ajlm-760	128	1	even	even	ADV
ajlm-760	128	2	so	so	ADV
ajlm-760	128	3	,	,	PUNCT
ajlm-760	128	4	conventional	conventional	ADJ
ajlm-760	128	5	phenotypic	phenotypic	ADJ
ajlm-760	128	6	susceptibility	susceptibility	NOUN
ajlm-760	128	7	testing	testing	NOUN
ajlm-760	128	8	methodologies	methodology	NOUN
ajlm-760	128	9	still	still	ADV
ajlm-760	128	10	have	have	VERB
ajlm-760	128	11	their	their	PRON
ajlm-760	128	12	place	place	NOUN
ajlm-760	128	13	in	in	ADP
ajlm-760	128	14	the	the	DET
ajlm-760	128	15	laboratory	laboratory	NOUN
ajlm-760	128	16	and	and	CCONJ
ajlm-760	128	17	must	must	AUX
ajlm-760	128	18	continue	continue	VERB
ajlm-760	128	19	to	to	PART
ajlm-760	128	20	be	be	AUX
ajlm-760	128	21	used	use	VERB
ajlm-760	128	22	for	for	ADP
ajlm-760	128	23	the	the	DET
ajlm-760	128	24	foreseeable	foreseeable	ADJ
ajlm-760	128	25	future	future	NOUN
ajlm-760	128	26	.	.	PUNCT
ajlm-760	129	1	for	for	ADP
ajlm-760	129	2	now	now	ADV
ajlm-760	129	3	,	,	PUNCT
ajlm-760	129	4	wgs	wgs	NOUN
ajlm-760	129	5	antimicrobial	antimicrobial	ADJ
ajlm-760	129	6	resistance	resistance	NOUN
ajlm-760	129	7	prediction	prediction	NOUN
ajlm-760	129	8	is	be	AUX
ajlm-760	129	9	best	well	ADV
ajlm-760	129	10	used	use	VERB
ajlm-760	129	11	as	as	ADP
ajlm-760	129	12	an	an	DET
ajlm-760	129	13	adjunct	adjunct	ADJ
ajlm-760	129	14	to	to	ADP
ajlm-760	129	15	conventional	conventional	ADJ
ajlm-760	129	16	phenotypic	phenotypic	ADJ
ajlm-760	129	17	susceptibility	susceptibility	NOUN
ajlm-760	129	18	testing	testing	NOUN
ajlm-760	129	19	.	.	PUNCT
ajlm-760	130	1	in	in	ADP
ajlm-760	130	2	summary	summary	NOUN
ajlm-760	130	3	,	,	PUNCT
ajlm-760	130	4	public	public	ADJ
ajlm-760	130	5	health	health	NOUN
ajlm-760	130	6	laboratories	laboratory	NOUN
ajlm-760	130	7	in	in	ADP
ajlm-760	130	8	africa	africa	PROPN
ajlm-760	130	9	need	need	VERB
ajlm-760	130	10	to	to	PART
ajlm-760	130	11	urgently	urgently	ADV
ajlm-760	130	12	reconsider	reconsider	VERB
ajlm-760	130	13	and	and	CCONJ
ajlm-760	130	14	adapt	adapt	VERB
ajlm-760	130	15	their	their	PRON
ajlm-760	130	16	molecular	molecular	ADJ
ajlm-760	130	17	surveillance	surveillance	NOUN
ajlm-760	130	18	methodologies	methodology	NOUN
ajlm-760	130	19	to	to	PART
ajlm-760	130	20	include	include	VERB
ajlm-760	130	21	wgs	wgs	NOUN
ajlm-760	130	22	.	.	PUNCT
ajlm-760	131	1	it	it	PRON
ajlm-760	131	2	is	be	AUX
ajlm-760	131	3	foreseen	foresee	VERB
ajlm-760	131	4	that	that	SCONJ
ajlm-760	131	5	wgs	wgs	NOUN
ajlm-760	131	6	analysis	analysis	NOUN
ajlm-760	131	7	will	will	AUX
ajlm-760	131	8	eventually	eventually	ADV
ajlm-760	131	9	replace	replace	VERB
ajlm-760	131	10	all	all	DET
ajlm-760	131	11	traditional	traditional	ADJ
ajlm-760	131	12	methods	method	NOUN
ajlm-760	131	13	currently	currently	ADV
ajlm-760	131	14	used	use	VERB
ajlm-760	131	15	in	in	ADP
ajlm-760	131	16	the	the	DET
ajlm-760	131	17	microbiology	microbiology	NOUN
ajlm-760	131	18	laboratory	laboratory	NOUN
ajlm-760	131	19	,	,	PUNCT
ajlm-760	131	20	both	both	PRON
ajlm-760	131	21	traditional	traditional	ADJ
ajlm-760	131	22	phenotypic	phenotypic	ADJ
ajlm-760	131	23	methods	method	NOUN
ajlm-760	131	24	and	and	CCONJ
ajlm-760	131	25	traditional	traditional	ADJ
ajlm-760	131	26	genotypic	genotypic	NOUN
ajlm-760	131	27	methods	method	NOUN
ajlm-760	131	28	including	include	VERB
ajlm-760	131	29	molecular	molecular	ADJ
ajlm-760	131	30	subtyping	subtype	VERB
ajlm-760	131	31	methods	method	NOUN
ajlm-760	131	32	such	such	ADJ
ajlm-760	131	33	as	as	ADP
ajlm-760	131	34	pfge	pfge	NOUN
ajlm-760	131	35	,	,	PUNCT
ajlm-760	131	36	mlva	mlva	PROPN
ajlm-760	131	37	and	and	CCONJ
ajlm-760	131	38	mlst.90,91,92,93	mlst.90,91,92,93	PROPN
ajlm-760	131	39	within	within	ADP
ajlm-760	131	40	the	the	DET
ajlm-760	131	41	next	next	ADJ
ajlm-760	131	42	year	year	NOUN
ajlm-760	131	43	,	,	PUNCT
ajlm-760	131	44	the	the	DET
ajlm-760	131	45	pulsenet	pulsenet	PROPN
ajlm-760	131	46	usa	usa	PROPN
ajlm-760	131	47	programme	programme	PROPN
ajlm-760	131	48	is	be	AUX
ajlm-760	131	49	planning	plan	VERB
ajlm-760	131	50	to	to	PART
ajlm-760	131	51	have	have	VERB
ajlm-760	131	52	wgs	wgs	NOUN
ajlm-760	131	53	(	(	PUNCT
ajlm-760	131	54	and	and	CCONJ
ajlm-760	131	55	analysis	analysis	NOUN
ajlm-760	131	56	of	of	ADP
ajlm-760	131	57	wgs	wgs	NOUN
ajlm-760	131	58	data	datum	NOUN
ajlm-760	131	59	)	)	PUNCT
ajlm-760	131	60	fully	fully	ADV
ajlm-760	131	61	implemented	implement	VERB
ajlm-760	131	62	as	as	ADP
ajlm-760	131	63	its	its	PRON
ajlm-760	131	64	primary	primary	ADJ
ajlm-760	131	65	method	method	NOUN
ajlm-760	131	66	for	for	ADP
ajlm-760	131	67	molecular	molecular	ADJ
ajlm-760	131	68	epidemiological	epidemiological	ADJ
ajlm-760	131	69	investigation	investigation	NOUN
ajlm-760	131	70	of	of	ADP
ajlm-760	131	71	enteric	enteric	ADJ
ajlm-760	131	72	pathogens.94	pathogens.94	NOUN
ajlm-760	131	73	the	the	DET
ajlm-760	131	74	next	next	ADJ
ajlm-760	131	75	challenge	challenge	NOUN
ajlm-760	131	76	is	be	AUX
ajlm-760	131	77	how	how	SCONJ
ajlm-760	131	78	to	to	PART
ajlm-760	131	79	effectively	effectively	ADV
ajlm-760	131	80	implement	implement	VERB
ajlm-760	131	81	wgs	wgs	NOUN
ajlm-760	131	82	analysis	analysis	NOUN
ajlm-760	131	83	globally	globally	ADV
ajlm-760	131	84	in	in	ADP
ajlm-760	131	85	public	public	ADJ
ajlm-760	131	86	health	health	NOUN
ajlm-760	131	87	laboratories	laboratory	NOUN
ajlm-760	131	88	,	,	PUNCT
ajlm-760	131	89	how	how	SCONJ
ajlm-760	131	90	to	to	PART
ajlm-760	131	91	standardise	standardise	VERB
ajlm-760	131	92	the	the	DET
ajlm-760	131	93	quality	quality	NOUN
ajlm-760	131	94	of	of	ADP
ajlm-760	131	95	wgs	wgs	NOUN
ajlm-760	131	96	data	datum	NOUN
ajlm-760	131	97	generated	generate	VERB
ajlm-760	131	98	and	and	CCONJ
ajlm-760	131	99	how	how	SCONJ
ajlm-760	131	100	to	to	PART
ajlm-760	131	101	standardise	standardise	VERB
ajlm-760	131	102	the	the	DET
ajlm-760	131	103	analysis	analysis	NOUN
ajlm-760	131	104	of	of	ADP
ajlm-760	131	105	wgs	wgs	NOUN
ajlm-760	131	106	data	datum	NOUN
ajlm-760	131	107	,	,	PUNCT
ajlm-760	131	108	all	all	PRON
ajlm-760	131	109	in	in	ADP
ajlm-760	131	110	order	order	NOUN
ajlm-760	131	111	to	to	PART
ajlm-760	131	112	allow	allow	VERB
ajlm-760	131	113	for	for	ADP
ajlm-760	131	114	a	a	DET
ajlm-760	131	115	successful	successful	ADJ
ajlm-760	131	116	inter	inter	ADJ
ajlm-760	131	117	-	-	ADJ
ajlm-760	131	118	laboratory	laboratory	ADJ
ajlm-760	131	119	comparison	comparison	NOUN
ajlm-760	131	120	of	of	ADP
ajlm-760	131	121	analysed	analyse	VERB
ajlm-760	131	122	wgs	wgs	NOUN
ajlm-760	131	123	data	datum	NOUN
ajlm-760	131	124	.	.	PUNCT
ajlm-760	132	1	pulsenet	pulsenet	PROPN
ajlm-760	132	2	international	international	PROPN
ajlm-760	132	3	has	have	AUX
ajlm-760	132	4	taken	take	VERB
ajlm-760	132	5	this	this	DET
ajlm-760	132	6	challenge	challenge	NOUN
ajlm-760	132	7	and	and	CCONJ
ajlm-760	132	8	published	publish	VERB
ajlm-760	132	9	their	their	PRON
ajlm-760	132	10	vision	vision	NOUN
ajlm-760	132	11	for	for	ADP
ajlm-760	132	12	implementation	implementation	NOUN
ajlm-760	132	13	of	of	ADP
ajlm-760	132	14	wgs	wgs	NOUN
ajlm-760	132	15	for	for	ADP
ajlm-760	132	16	global	global	ADJ
ajlm-760	132	17	foodborne	foodborne	ADJ
ajlm-760	132	18	disease	disease	NOUN
ajlm-760	132	19	surveillance	surveillance	NOUN
ajlm-760	132	20	and	and	CCONJ
ajlm-760	132	21	global	global	ADJ
ajlm-760	132	22	analysis	analysis	NOUN
ajlm-760	132	23	of	of	ADP
ajlm-760	132	24	enteric	enteric	ADJ
ajlm-760	132	25	pathogens.15	pathogens.15	PROPN
ajlm-760	132	26	pulsenet	pulsenet	PROPN
ajlm-760	132	27	africa	africa	PROPN
ajlm-760	132	28	(	(	PUNCT
ajlm-760	132	29	a	a	DET
ajlm-760	132	30	regional	regional	ADJ
ajlm-760	132	31	network	network	NOUN
ajlm-760	132	32	of	of	ADP
ajlm-760	132	33	pulsenet	pulsenet	PROPN
ajlm-760	132	34	international	international	PROPN
ajlm-760	132	35	)	)	PUNCT
ajlm-760	132	36	believes	believe	VERB
ajlm-760	132	37	and	and	CCONJ
ajlm-760	132	38	supports	support	VERB
ajlm-760	132	39	this	this	DET
ajlm-760	132	40	vision	vision	NOUN
ajlm-760	132	41	for	for	ADP
ajlm-760	132	42	implementation	implementation	NOUN
ajlm-760	132	43	of	of	ADP
ajlm-760	132	44	wgs	wgs	NOUN
ajlm-760	132	45	for	for	ADP
ajlm-760	132	46	global	global	ADJ
ajlm-760	132	47	analysis	analysis	NOUN
ajlm-760	132	48	of	of	ADP
ajlm-760	132	49	enteric	enteric	ADJ
ajlm-760	132	50	pathogens	pathogen	NOUN
ajlm-760	132	51	.	.	PUNCT
ajlm-760	133	1	acknowledgements	acknowledgement	NOUN
ajlm-760	133	2	competing	compete	VERB
ajlm-760	133	3	interests	interest	NOUN
ajlm-760	133	4	the	the	DET
ajlm-760	133	5	author	author	NOUN
ajlm-760	133	6	declares	declare	VERB
ajlm-760	133	7	that	that	SCONJ
ajlm-760	133	8	he	he	PRON
ajlm-760	133	9	has	have	VERB
ajlm-760	133	10	no	no	DET
ajlm-760	133	11	financial	financial	ADJ
ajlm-760	133	12	or	or	CCONJ
ajlm-760	133	13	personal	personal	ADJ
ajlm-760	133	14	relationships	relationship	NOUN
ajlm-760	133	15	that	that	PRON
ajlm-760	133	16	may	may	AUX
ajlm-760	133	17	have	have	AUX
ajlm-760	133	18	inappropriately	inappropriately	ADV
ajlm-760	133	19	influenced	influence	VERB
ajlm-760	133	20	him	he	PRON
ajlm-760	133	21	in	in	ADP
ajlm-760	133	22	writing	write	VERB
ajlm-760	133	23	this	this	DET
ajlm-760	133	24	article	article	NOUN
ajlm-760	133	25	.	.	PUNCT
ajlm-760	134	1	sources	source	NOUN
ajlm-760	134	2	of	of	ADP
ajlm-760	134	3	support	support	NOUN
ajlm-760	134	4	none	none	NOUN
ajlm-760	134	5	.	.	PUNCT
ajlm-760	135	1	references	reference	NOUN
ajlm-760	135	2	van	van	PROPN
ajlm-760	135	3	belkum	belkum	PROPN
ajlm-760	135	4	a	a	NOUN
ajlm-760	135	5	,	,	PUNCT
ajlm-760	135	6	tassios	tassio	NOUN
ajlm-760	135	7	pt	pt	PROPN
ajlm-760	135	8	,	,	PUNCT
ajlm-760	135	9	dijkshoorn	dijkshoorn	ADJ
ajlm-760	135	10	l	l	NOUN
ajlm-760	135	11	,	,	PUNCT
ajlm-760	135	12	et	et	PROPN
ajlm-760	135	13	al	al	PROPN
ajlm-760	135	14	.	.	PUNCT
ajlm-760	135	15	guidelines	guideline	NOUN
ajlm-760	135	16	for	for	ADP
ajlm-760	135	17	the	the	DET
ajlm-760	135	18	validation	validation	NOUN
ajlm-760	135	19	and	and	CCONJ
ajlm-760	135	20	application	application	NOUN
ajlm-760	135	21	of	of	ADP
ajlm-760	135	22	typing	type	VERB
ajlm-760	135	23	methods	method	NOUN
ajlm-760	135	24	for	for	ADP
ajlm-760	135	25	use	use	NOUN
ajlm-760	135	26	in	in	ADP
ajlm-760	135	27	bacterial	bacterial	ADJ
ajlm-760	135	28	epidemiology	epidemiology	NOUN
ajlm-760	135	29	.	.	PUNCT
ajlm-760	136	1	clin	clin	PROPN
ajlm-760	136	2	microbiol	microbiol	PROPN
ajlm-760	136	3	infect	infect	VERB
ajlm-760	136	4	.	.	PUNCT
ajlm-760	137	1	2007;13	2007;13	NUM
ajlm-760	137	2	(	(	PUNCT
ajlm-760	137	3	suppl	suppl	PROPN
ajlm-760	137	4	3):1–46	3):1–46	PROPN
ajlm-760	137	5	.	.	PUNCT
ajlm-760	138	1	https://doi.org/10.1111/j.1469-0691.2007.01786.x	https://doi.org/10.1111/j.1469-0691.2007.01786.x	PROPN
ajlm-760	138	2	sabat	sabat	PROPN
ajlm-760	138	3	aj	aj	PROPN
ajlm-760	138	4	,	,	PUNCT
ajlm-760	138	5	budimir	budimir	PROPN
ajlm-760	138	6	a	a	PRON
ajlm-760	138	7	,	,	PUNCT
ajlm-760	138	8	nashev	nashev	ADJ
ajlm-760	138	9	d	d	NOUN
ajlm-760	138	10	,	,	PUNCT
ajlm-760	138	11	et	et	PROPN
ajlm-760	138	12	al	al	PROPN
ajlm-760	138	13	.	.	PROPN
ajlm-760	138	14	overview	overview	NOUN
ajlm-760	138	15	of	of	ADP
ajlm-760	138	16	molecular	molecular	ADJ
ajlm-760	138	17	typing	typing	NOUN
ajlm-760	138	18	methods	method	NOUN
ajlm-760	138	19	for	for	ADP
ajlm-760	138	20	outbreak	outbreak	NOUN
ajlm-760	138	21	detection	detection	NOUN
ajlm-760	138	22	and	and	CCONJ
ajlm-760	138	23	epidemiological	epidemiological	ADJ
ajlm-760	138	24	surveillance	surveillance	NOUN
ajlm-760	138	25	.	.	PUNCT
ajlm-760	139	1	euro	euro	NOUN
ajlm-760	139	2	surveill	surveill	NOUN
ajlm-760	139	3	.	.	PUNCT
ajlm-760	140	1	2013;18(4):20380	2013;18(4):20380	X
ajlm-760	140	2	.	.	PUNCT
ajlm-760	141	1	https://doi.org/10.2807/ese.18.04.20380-en	https://doi.org/10.2807/ese.18.04.20380-en	PROPN
ajlm-760	141	2	swaminathan	swaminathan	PROPN
ajlm-760	141	3	b	b	PROPN
ajlm-760	141	4	,	,	PUNCT
ajlm-760	141	5	gerner	gerner	NOUN
ajlm-760	141	6	-	-	PUNCT
ajlm-760	141	7	smidt	smidt	NOUN
ajlm-760	141	8	p	p	X
ajlm-760	141	9	,	,	PUNCT
ajlm-760	141	10	ng	ng	PROPN
ajlm-760	141	11	lk	lk	PROPN
ajlm-760	141	12	,	,	PUNCT
ajlm-760	141	13	et	et	PROPN
ajlm-760	141	14	al	al	PROPN
ajlm-760	141	15	.	.	PUNCT
ajlm-760	142	1	building	build	VERB
ajlm-760	142	2	pulsenet	pulsenet	PROPN
ajlm-760	142	3	international	international	PROPN
ajlm-760	142	4	:	:	PUNCT
ajlm-760	142	5	an	an	DET
ajlm-760	142	6	interconnected	interconnected	ADJ
ajlm-760	142	7	system	system	NOUN
ajlm-760	142	8	of	of	ADP
ajlm-760	142	9	laboratory	laboratory	NOUN
ajlm-760	142	10	networks	network	NOUN
ajlm-760	142	11	to	to	PART
ajlm-760	142	12	facilitate	facilitate	VERB
ajlm-760	142	13	timely	timely	ADJ
ajlm-760	142	14	public	public	ADJ
ajlm-760	142	15	health	health	NOUN
ajlm-760	142	16	recognition	recognition	NOUN
ajlm-760	142	17	and	and	CCONJ
ajlm-760	142	18	response	response	NOUN
ajlm-760	142	19	to	to	ADP
ajlm-760	142	20	foodborne	foodborne	ADJ
ajlm-760	142	21	disease	disease	NOUN
ajlm-760	142	22	outbreaks	outbreak	NOUN
ajlm-760	142	23	and	and	CCONJ
ajlm-760	142	24	emerging	emerge	VERB
ajlm-760	142	25	foodborne	foodborne	ADJ
ajlm-760	142	26	diseases	disease	NOUN
ajlm-760	142	27	.	.	PUNCT
ajlm-760	143	1	foodborne	foodborne	PROPN
ajlm-760	143	2	pathog	pathog	PROPN
ajlm-760	143	3	dis	dis	PROPN
ajlm-760	143	4	.	.	PUNCT
ajlm-760	144	1	2006;3(1):36–50	2006;3(1):36–50	NUM
ajlm-760	144	2	.	.	PUNCT
ajlm-760	145	1	https://doi.org/10.1089/fpd.2006.3.36	https://doi.org/10.1089/fpd.2006.3.36	NOUN
ajlm-760	145	2	smith	smith	PROPN
ajlm-760	145	3	am	be	AUX
ajlm-760	145	4	,	,	PUNCT
ajlm-760	145	5	keddy	keddy	PROPN
ajlm-760	145	6	kh	kh	PROPN
ajlm-760	145	7	,	,	PUNCT
ajlm-760	145	8	ismail	ismail	PROPN
ajlm-760	145	9	h	h	PROPN
ajlm-760	145	10	,	,	PUNCT
ajlm-760	145	11	et	et	PROPN
ajlm-760	145	12	al	al	PROPN
ajlm-760	145	13	.	.	PUNCT
ajlm-760	146	1	international	international	ADJ
ajlm-760	146	2	collaboration	collaboration	NOUN
ajlm-760	146	3	tracks	track	VERB
ajlm-760	146	4	typhoid	typhoid	NOUN
ajlm-760	146	5	fever	fever	NOUN
ajlm-760	146	6	cases	case	NOUN
ajlm-760	146	7	over	over	ADP
ajlm-760	146	8	two	two	NUM
ajlm-760	146	9	continents	continent	NOUN
ajlm-760	146	10	from	from	ADP
ajlm-760	146	11	south	south	PROPN
ajlm-760	146	12	africa	africa	PROPN
ajlm-760	146	13	to	to	ADP
ajlm-760	146	14	australia	australia	PROPN
ajlm-760	146	15	.	.	PUNCT
ajlm-760	147	1	j	j	PROPN
ajlm-760	147	2	med	med	PROPN
ajlm-760	147	3	microbiol	microbiol	PROPN
ajlm-760	147	4	.	.	PUNCT
ajlm-760	148	1	2011;60:1405–1407	2011;60:1405–1407	X
ajlm-760	148	2	.	.	PUNCT
ajlm-760	149	1	https://doi.org/10.1099/jmm.0.030700-0	https://doi.org/10.1099/jmm.0.030700-0	PROPN
ajlm-760	149	2	wong	wong	PROPN
ajlm-760	149	3	vk	vk	PROPN
ajlm-760	149	4	,	,	PUNCT
ajlm-760	149	5	baker	baker	PROPN
ajlm-760	149	6	s	s	PROPN
ajlm-760	149	7	,	,	PUNCT
ajlm-760	149	8	pickard	pickard	PROPN
ajlm-760	149	9	dj	dj	PROPN
ajlm-760	149	10	,	,	PUNCT
ajlm-760	149	11	et	et	PROPN
ajlm-760	149	12	al	al	PROPN
ajlm-760	149	13	.	.	PUNCT
ajlm-760	149	14	phylogeographical	phylogeographical	ADJ
ajlm-760	149	15	analysis	analysis	NOUN
ajlm-760	149	16	of	of	ADP
ajlm-760	149	17	the	the	DET
ajlm-760	149	18	dominant	dominant	ADJ
ajlm-760	149	19	multidrug	multidrug	NOUN
ajlm-760	149	20	-	-	PUNCT
ajlm-760	149	21	resistant	resistant	ADJ
ajlm-760	149	22	h58	h58	NOUN
ajlm-760	149	23	clade	clade	NOUN
ajlm-760	149	24	of	of	ADP
ajlm-760	149	25	salmonella	salmonella	NOUN
ajlm-760	149	26	typhi	typhi	NOUN
ajlm-760	149	27	identifies	identify	VERB
ajlm-760	149	28	interand	interand	VERB
ajlm-760	149	29	intracontinental	intracontinental	ADJ
ajlm-760	149	30	transmission	transmission	NOUN
ajlm-760	149	31	events	event	NOUN
ajlm-760	149	32	.	.	PUNCT
ajlm-760	150	1	nat	nat	PROPN
ajlm-760	150	2	genet	genet	PROPN
ajlm-760	150	3	.	.	PUNCT
ajlm-760	151	1	2015;47(6):632–639	2015;47(6):632–639	NUM
ajlm-760	151	2	.	.	PUNCT
ajlm-760	152	1	https://doi.org/10.1038/ng.3281	https://doi.org/10.1038/ng.3281	ADV
ajlm-760	152	2	kariuki	kariuki	PROPN
ajlm-760	152	3	s	s	PROPN
ajlm-760	152	4	,	,	PUNCT
ajlm-760	152	5	muthotho	muthotho	PROPN
ajlm-760	152	6	n	n	CCONJ
ajlm-760	152	7	,	,	PUNCT
ajlm-760	152	8	kimari	kimari	PROPN
ajlm-760	152	9	j	j	PROPN
ajlm-760	152	10	,	,	PUNCT
ajlm-760	152	11	waiyaki	waiyaki	NOUN
ajlm-760	152	12	p	p	PROPN
ajlm-760	152	13	,	,	PUNCT
ajlm-760	152	14	hart	hart	PROPN
ajlm-760	152	15	ca	can	AUX
ajlm-760	152	16	,	,	PUNCT
ajlm-760	152	17	gilks	gilks	X
ajlm-760	152	18	cf	cf	VERB
ajlm-760	152	19	.	.	PUNCT
ajlm-760	153	1	molecular	molecular	ADJ
ajlm-760	153	2	typing	typing	NOUN
ajlm-760	153	3	of	of	ADP
ajlm-760	153	4	multi	multi	ADJ
ajlm-760	153	5	-	-	ADJ
ajlm-760	153	6	drug	drug	ADJ
ajlm-760	153	7	resistant	resistant	ADJ
ajlm-760	153	8	shigella	shigella	NOUN
ajlm-760	153	9	dysenteriae	dysenteriae	NOUN
ajlm-760	153	10	type	type	NOUN
ajlm-760	153	11	1	1	NUM
ajlm-760	153	12	by	by	ADP
ajlm-760	153	13	plasmid	plasmid	ADJ
ajlm-760	153	14	analysis	analysis	NOUN
ajlm-760	153	15	and	and	CCONJ
ajlm-760	153	16	pulsed	pulse	VERB
ajlm-760	153	17	-	-	PUNCT
ajlm-760	153	18	field	field	NOUN
ajlm-760	153	19	gel	gel	NOUN
ajlm-760	153	20	electrophoresis	electrophoresis	NOUN
ajlm-760	153	21	.	.	PUNCT
ajlm-760	154	1	trans	trans	PROPN
ajlm-760	154	2	r	r	PROPN
ajlm-760	154	3	soc	soc	PROPN
ajlm-760	154	4	trop	trop	X
ajlm-760	154	5	med	med	PROPN
ajlm-760	154	6	hyg	hyg	PROPN
ajlm-760	154	7	.	.	PUNCT
ajlm-760	154	8	1996;90(6):712–714	1996;90(6):712–714	NUM
ajlm-760	154	9	.	.	PUNCT
ajlm-760	155	1	https://doi.org/10.1016/s0035-9203(96)90447-2	https://doi.org/10.1016/s0035-9203(96)90447-2	PROPN
ajlm-760	155	2	foley	foley	PROPN
ajlm-760	155	3	sl	sl	PROPN
ajlm-760	155	4	,	,	PUNCT
ajlm-760	155	5	lynne	lynne	PROPN
ajlm-760	155	6	am	be	AUX
ajlm-760	155	7	,	,	PUNCT
ajlm-760	155	8	nayak	nayak	PROPN
ajlm-760	155	9	r.	r.	PROPN
ajlm-760	155	10	molecular	molecular	ADJ
ajlm-760	155	11	typing	typing	NOUN
ajlm-760	155	12	methodologies	methodology	NOUN
ajlm-760	155	13	for	for	ADP
ajlm-760	155	14	microbial	microbial	ADJ
ajlm-760	155	15	source	source	NOUN
ajlm-760	155	16	tracking	tracking	NOUN
ajlm-760	155	17	and	and	CCONJ
ajlm-760	155	18	epidemiological	epidemiological	ADJ
ajlm-760	155	19	investigations	investigation	NOUN
ajlm-760	155	20	of	of	ADP
ajlm-760	155	21	gram	gram	NOUN
ajlm-760	155	22	-	-	PUNCT
ajlm-760	155	23	negative	negative	ADJ
ajlm-760	155	24	bacterial	bacterial	ADJ
ajlm-760	155	25	foodborne	foodborne	ADJ
ajlm-760	155	26	pathogens	pathogen	NOUN
ajlm-760	155	27	.	.	PUNCT
ajlm-760	156	1	infect	infect	VERB
ajlm-760	156	2	genet	genet	NOUN
ajlm-760	156	3	evol	evol	NOUN
ajlm-760	156	4	.	.	PUNCT
ajlm-760	157	1	2009;9(4):430–440	2009;9(4):430–440	X
ajlm-760	157	2	.	.	X
ajlm-760	157	3	https://doi.org/10.1016/j.meegid.2009.03.004	https://doi.org/10.1016/j.meegid.2009.03.004	PROPN
ajlm-760	157	4	karama	karama	PROPN
ajlm-760	157	5	m	m	PROPN
ajlm-760	157	6	,	,	PUNCT
ajlm-760	157	7	gyles	gyles	PROPN
ajlm-760	157	8	cl	cl	NOUN
ajlm-760	157	9	.	.	PUNCT
ajlm-760	158	1	methods	method	NOUN
ajlm-760	158	2	for	for	ADP
ajlm-760	158	3	genotyping	genotype	VERB
ajlm-760	158	4	verotoxin	verotoxin	ADV
ajlm-760	158	5	-	-	PUNCT
ajlm-760	158	6	producing	produce	VERB
ajlm-760	158	7	escherichia	escherichia	NOUN
ajlm-760	158	8	coli	coli	NOUN
ajlm-760	158	9	.	.	PUNCT
ajlm-760	159	1	zoonoses	zoonosis	NOUN
ajlm-760	159	2	public	public	ADJ
ajlm-760	159	3	health	health	NOUN
ajlm-760	159	4	.	.	PUNCT
ajlm-760	160	1	2010;57(7–8):447–462	2010;57(7–8):447–462	NOUN
ajlm-760	160	2	.	.	PUNCT
ajlm-760	161	1	https://doi.org/10.1111/j.1863-2378.2009.01259.x	https://doi.org/10.1111/j.1863-2378.2009.01259.x	X
ajlm-760	162	1	de	de	X
ajlm-760	162	2	r	r	PROPN
ajlm-760	162	3	,	,	PUNCT
ajlm-760	162	4	ghosh	ghosh	PROPN
ajlm-760	162	5	jb	jb	PROPN
ajlm-760	162	6	,	,	PUNCT
ajlm-760	162	7	sen	sen	PROPN
ajlm-760	162	8	gupta	gupta	PROPN
ajlm-760	162	9	s	s	PART
ajlm-760	162	10	,	,	PUNCT
ajlm-760	162	11	takeda	takeda	PROPN
ajlm-760	162	12	y	y	PROPN
ajlm-760	162	13	,	,	PUNCT
ajlm-760	162	14	nair	nair	NOUN
ajlm-760	162	15	gb	gb	PROPN
ajlm-760	162	16	.	.	PUNCT
ajlm-760	163	1	the	the	DET
ajlm-760	163	2	role	role	NOUN
ajlm-760	163	3	of	of	ADP
ajlm-760	163	4	vibrio	vibrio	ADJ
ajlm-760	163	5	cholerae	cholerae	NOUN
ajlm-760	163	6	genotyping	genotype	VERB
ajlm-760	163	7	in	in	ADP
ajlm-760	163	8	africa	africa	PROPN
ajlm-760	163	9	.	.	PUNCT
ajlm-760	164	1	j	j	PROPN
ajlm-760	164	2	infect	infect	VERB
ajlm-760	164	3	dis	dis	PROPN
ajlm-760	164	4	.	.	PUNCT
ajlm-760	165	1	2013;208	2013;208	NUM
ajlm-760	165	2	(	(	PUNCT
ajlm-760	165	3	suppl	suppl	ADJ
ajlm-760	165	4	1):32–38	1):32–38	NUM
ajlm-760	165	5	.	.	PUNCT
ajlm-760	165	6	https://doi.org/10.1093/infdis/jit199	https://doi.org/10.1093/infdis/jit199	NOUN
ajlm-760	165	7	goering	goere	VERB
ajlm-760	165	8	rv	rv	PROPN
ajlm-760	165	9	,	,	PUNCT
ajlm-760	165	10	kock	kock	PROPN
ajlm-760	165	11	r	r	PROPN
ajlm-760	165	12	,	,	PUNCT
ajlm-760	165	13	grundmann	grundmann	NOUN
ajlm-760	165	14	h	h	PROPN
ajlm-760	165	15	,	,	PUNCT
ajlm-760	165	16	werner	werner	PROPN
ajlm-760	165	17	g	g	PROPN
ajlm-760	165	18	,	,	PUNCT
ajlm-760	165	19	friedrich	friedrich	PROPN
ajlm-760	165	20	aw	aw	INTJ
ajlm-760	165	21	.	.	PROPN
ajlm-760	165	22	from	from	ADP
ajlm-760	165	23	theory	theory	NOUN
ajlm-760	165	24	to	to	ADP
ajlm-760	165	25	practice	practice	VERB
ajlm-760	165	26	:	:	PUNCT
ajlm-760	165	27	molecular	molecular	ADJ
ajlm-760	165	28	strain	strain	NOUN
ajlm-760	165	29	typing	type	VERB
ajlm-760	165	30	for	for	ADP
ajlm-760	165	31	the	the	DET
ajlm-760	165	32	clinical	clinical	ADJ
ajlm-760	165	33	and	and	CCONJ
ajlm-760	165	34	public	public	ADJ
ajlm-760	165	35	health	health	NOUN
ajlm-760	165	36	setting	setting	NOUN
ajlm-760	165	37	.	.	PUNCT
ajlm-760	166	1	euro	euro	NOUN
ajlm-760	166	2	surveill	surveill	NOUN
ajlm-760	166	3	.	.	PUNCT
ajlm-760	167	1	2013;18(4):20383	2013;18(4):20383	X
ajlm-760	167	2	.	.	PUNCT
ajlm-760	168	1	https://doi.org/10.2807/ese.18.04.20383-en	https://doi.org/10.2807/ese.18.04.20383-en	PROPN
ajlm-760	168	2	rahaman	rahaman	NOUN
ajlm-760	168	3	mh	mh	PROPN
ajlm-760	168	4	,	,	PUNCT
ajlm-760	168	5	islam	islam	PROPN
ajlm-760	168	6	t	t	PROPN
ajlm-760	168	7	,	,	PUNCT
ajlm-760	168	8	colwell	colwell	PROPN
ajlm-760	168	9	rr	rr	PROPN
ajlm-760	168	10	,	,	PUNCT
ajlm-760	168	11	alam	alam	PROPN
ajlm-760	168	12	m.	m.	NOUN
ajlm-760	168	13	molecular	molecular	ADJ
ajlm-760	168	14	tools	tool	NOUN
ajlm-760	168	15	in	in	ADP
ajlm-760	168	16	understanding	understand	VERB
ajlm-760	168	17	the	the	DET
ajlm-760	168	18	evolution	evolution	NOUN
ajlm-760	168	19	of	of	ADP
ajlm-760	168	20	vibrio	vibrio	ADJ
ajlm-760	168	21	cholerae	cholerae	PROPN
ajlm-760	168	22	.	.	PUNCT
ajlm-760	169	1	front	front	PROPN
ajlm-760	169	2	microbiol	microbiol	PROPN
ajlm-760	169	3	.	.	PUNCT
ajlm-760	170	1	2015;6:1040	2015;6:1040	NOUN
ajlm-760	170	2	.	.	PUNCT
ajlm-760	171	1	https://doi.org/10.3389/fmicb.2015.01040	https://doi.org/10.3389/fmicb.2015.01040	PROPN
ajlm-760	171	2	gilchrist	gilchrist	NOUN
ajlm-760	171	3	ca	ca	PROPN
ajlm-760	171	4	,	,	PUNCT
ajlm-760	171	5	turner	turner	PROPN
ajlm-760	171	6	sd	sd	PROPN
ajlm-760	171	7	,	,	PUNCT
ajlm-760	171	8	riley	riley	PROPN
ajlm-760	171	9	mf	mf	PROPN
ajlm-760	171	10	,	,	PUNCT
ajlm-760	171	11	petri	petri	ADJ
ajlm-760	171	12	wa	wa	PROPN
ajlm-760	171	13	,	,	PUNCT
ajlm-760	171	14	jr	jr	PROPN
ajlm-760	171	15	.	.	PROPN
ajlm-760	171	16	,	,	PUNCT
ajlm-760	171	17	hewlett	hewlett	PROPN
ajlm-760	171	18	el	el	PROPN
ajlm-760	171	19	.	.	PUNCT
ajlm-760	172	1	whole	whole	ADJ
ajlm-760	172	2	-	-	PUNCT
ajlm-760	172	3	genome	genome	NOUN
ajlm-760	172	4	sequencing	sequencing	NOUN
ajlm-760	172	5	in	in	ADP
ajlm-760	172	6	outbreak	outbreak	NOUN
ajlm-760	172	7	analysis	analysis	NOUN
ajlm-760	172	8	.	.	PUNCT
ajlm-760	173	1	clin	clin	PROPN
ajlm-760	173	2	microbiol	microbiol	PROPN
ajlm-760	173	3	rev	rev	PROPN
ajlm-760	173	4	.	.	PROPN
ajlm-760	173	5	2015;28(3):541–563	2015;28(3):541–563	NUM
ajlm-760	173	6	.	.	PUNCT
ajlm-760	174	1	https://doi.org/10.1128/cmr.00075-13	https://doi.org/10.1128/cmr.00075-13	PROPN
ajlm-760	174	2	leekitcharoenphon	leekitcharoenphon	VERB
ajlm-760	174	3	p	p	PROPN
ajlm-760	174	4	,	,	PUNCT
ajlm-760	174	5	nielsen	nielsen	PROPN
ajlm-760	174	6	em	em	PRON
ajlm-760	174	7	,	,	PUNCT
ajlm-760	174	8	kaas	kaas	NOUN
ajlm-760	174	9	rs	rs	PROPN
ajlm-760	174	10	,	,	PUNCT
ajlm-760	174	11	lund	lund	PROPN
ajlm-760	174	12	o	o	PROPN
ajlm-760	174	13	,	,	PUNCT
ajlm-760	174	14	aarestrup	aarestrup	PROPN
ajlm-760	174	15	fm	fm	PROPN
ajlm-760	174	16	.	.	PROPN
ajlm-760	174	17	evaluation	evaluation	NOUN
ajlm-760	174	18	of	of	ADP
ajlm-760	174	19	whole	whole	ADJ
ajlm-760	174	20	genome	genome	NOUN
ajlm-760	174	21	sequencing	sequencing	NOUN
ajlm-760	174	22	for	for	ADP
ajlm-760	174	23	outbreak	outbreak	NOUN
ajlm-760	174	24	detection	detection	NOUN
ajlm-760	174	25	of	of	ADP
ajlm-760	174	26	salmonella	salmonella	PROPN
ajlm-760	174	27	enterica	enterica	PROPN
ajlm-760	174	28	.	.	PUNCT
ajlm-760	175	1	plos	plos	PROPN
ajlm-760	175	2	one	one	NUM
ajlm-760	175	3	.	.	PUNCT
ajlm-760	176	1	2014;9(2):e87991	2014;9(2):e87991	NUM
ajlm-760	176	2	.	.	PUNCT
ajlm-760	177	1	https://doi.org/10.1371/journal.pone.0087991	https://doi.org/10.1371/journal.pone.0087991	PROPN
ajlm-760	177	2	jackson	jackson	PROPN
ajlm-760	177	3	br	br	PROPN
ajlm-760	177	4	,	,	PUNCT
ajlm-760	177	5	tarr	tarr	PROPN
ajlm-760	177	6	c	c	NOUN
ajlm-760	177	7	,	,	PUNCT
ajlm-760	177	8	strain	strain	NOUN
ajlm-760	177	9	e	e	NOUN
ajlm-760	177	10	,	,	PUNCT
ajlm-760	177	11	et	et	PROPN
ajlm-760	177	12	al	al	PROPN
ajlm-760	177	13	.	.	PUNCT
ajlm-760	177	14	implementation	implementation	NOUN
ajlm-760	177	15	of	of	ADP
ajlm-760	177	16	nationwide	nationwide	ADJ
ajlm-760	177	17	real	real	ADJ
ajlm-760	177	18	-	-	PUNCT
ajlm-760	177	19	time	time	NOUN
ajlm-760	177	20	whole	whole	ADJ
ajlm-760	177	21	-	-	PUNCT
ajlm-760	177	22	genome	genome	NOUN
ajlm-760	177	23	sequencing	sequencing	NOUN
ajlm-760	177	24	to	to	PART
ajlm-760	177	25	enhance	enhance	VERB
ajlm-760	177	26	listeriosis	listeriosis	NOUN
ajlm-760	177	27	outbreak	outbreak	NOUN
ajlm-760	177	28	detection	detection	NOUN
ajlm-760	177	29	and	and	CCONJ
ajlm-760	177	30	investigation	investigation	NOUN
ajlm-760	177	31	.	.	PUNCT
ajlm-760	178	1	clin	clin	PROPN
ajlm-760	178	2	infect	infect	PROPN
ajlm-760	178	3	dis	dis	PROPN
ajlm-760	178	4	.	.	PUNCT
ajlm-760	179	1	2016;63(3):380–386	2016;63(3):380–386	NUM
ajlm-760	179	2	.	.	PUNCT
ajlm-760	179	3	https://doi.org/10.1093/cid/ciw242	https://doi.org/10.1093/cid/ciw242	VERB
ajlm-760	179	4	nadon	nadon	PROPN
ajlm-760	179	5	c	c	NOUN
ajlm-760	179	6	,	,	PUNCT
ajlm-760	179	7	van	van	PROPN
ajlm-760	179	8	walle	walle	PROPN
ajlm-760	179	9	i	i	PROPN
ajlm-760	179	10	,	,	PUNCT
ajlm-760	179	11	gerner	gerner	NOUN
ajlm-760	179	12	-	-	PUNCT
ajlm-760	179	13	smidt	smidt	NOUN
ajlm-760	179	14	p	p	NOUN
ajlm-760	179	15	,	,	PUNCT
ajlm-760	179	16	et	et	PROPN
ajlm-760	179	17	al	al	PROPN
ajlm-760	179	18	.	.	PUNCT
ajlm-760	180	1	pulsenet	pulsenet	PROPN
ajlm-760	180	2	international	international	PROPN
ajlm-760	180	3	:	:	PUNCT
ajlm-760	180	4	vision	vision	NOUN
ajlm-760	180	5	for	for	ADP
ajlm-760	180	6	the	the	DET
ajlm-760	180	7	implementation	implementation	NOUN
ajlm-760	180	8	of	of	ADP
ajlm-760	180	9	whole	whole	ADJ
ajlm-760	180	10	genome	genome	NOUN
ajlm-760	180	11	sequencing	sequence	VERB
ajlm-760	180	12	(	(	PUNCT
ajlm-760	180	13	wgs	wgs	NOUN
ajlm-760	180	14	)	)	PUNCT
ajlm-760	180	15	for	for	ADP
ajlm-760	180	16	global	global	ADJ
ajlm-760	180	17	food	food	NOUN
ajlm-760	180	18	-	-	PUNCT
ajlm-760	180	19	borne	bear	VERB
ajlm-760	180	20	disease	disease	NOUN
ajlm-760	180	21	surveillance	surveillance	NOUN
ajlm-760	180	22	.	.	PUNCT
ajlm-760	181	1	euro	euro	NOUN
ajlm-760	181	2	surveill	surveill	NOUN
ajlm-760	181	3	.	.	PUNCT
ajlm-760	182	1	2017;22	2017;22	NUM
ajlm-760	182	2	:	:	PUNCT
ajlm-760	182	3	pii	pii	NOUN
ajlm-760	182	4	:	:	PUNCT
ajlm-760	182	5	30544	30544	NUM
ajlm-760	182	6	.	.	PUNCT
ajlm-760	183	1	https://doi.org/30510.32807/31560-37917.es.32017.30522.30523.30544	https://doi.org/30510.32807/31560-37917.es.32017.30522.30523.30544	PROPN
ajlm-760	183	2	.	.	PROPN
ajlm-760	183	3	wachsmuth	wachsmuth	PROPN
ajlm-760	183	4	ik	ik	PROPN
ajlm-760	183	5	,	,	PUNCT
ajlm-760	183	6	kiehlbauch	kiehlbauch	PROPN
ajlm-760	183	7	ja	ja	PROPN
ajlm-760	183	8	,	,	PUNCT
ajlm-760	183	9	bopp	bopp	PROPN
ajlm-760	183	10	ca	can	AUX
ajlm-760	183	11	,	,	PUNCT
ajlm-760	183	12	et	et	PROPN
ajlm-760	183	13	al	al	PROPN
ajlm-760	183	14	.	.	PUNCT
ajlm-760	184	1	the	the	DET
ajlm-760	184	2	use	use	NOUN
ajlm-760	184	3	of	of	ADP
ajlm-760	184	4	plasmid	plasmid	ADJ
ajlm-760	184	5	profiles	profile	NOUN
ajlm-760	184	6	and	and	CCONJ
ajlm-760	184	7	nucleic	nucleic	ADJ
ajlm-760	184	8	acid	acid	NOUN
ajlm-760	184	9	probes	probe	NOUN
ajlm-760	184	10	in	in	ADP
ajlm-760	184	11	epidemiologic	epidemiologic	ADJ
ajlm-760	184	12	investigations	investigation	NOUN
ajlm-760	184	13	of	of	ADP
ajlm-760	184	14	foodborne	foodborne	ADJ
ajlm-760	184	15	,	,	PUNCT
ajlm-760	184	16	diarrheal	diarrheal	ADJ
ajlm-760	184	17	diseases	disease	NOUN
ajlm-760	184	18	.	.	PUNCT
ajlm-760	185	1	int	int	NOUN
ajlm-760	185	2	j	j	PROPN
ajlm-760	185	3	food	food	PROPN
ajlm-760	185	4	microbiol	microbiol	PROPN
ajlm-760	185	5	.	.	PUNCT
ajlm-760	186	1	1991;12(1):77–89	1991;12(1):77–89	X
ajlm-760	186	2	.	.	PUNCT
ajlm-760	187	1	https://doi.org/10.1016/0168-1605(91)90049-u	https://doi.org/10.1016/0168-1605(91)90049-u	PROPN
ajlm-760	187	2	kariuki	kariuki	PROPN
ajlm-760	187	3	s	s	PROPN
ajlm-760	187	4	,	,	PUNCT
ajlm-760	187	5	gilks	gilks	PROPN
ajlm-760	187	6	c	c	PROPN
ajlm-760	187	7	,	,	PUNCT
ajlm-760	187	8	kimari	kimari	PROPN
ajlm-760	187	9	j	j	PROPN
ajlm-760	187	10	,	,	PUNCT
ajlm-760	187	11	muyodi	muyodi	PROPN
ajlm-760	187	12	j	j	PROPN
ajlm-760	187	13	,	,	PUNCT
ajlm-760	187	14	waiyaki	waiyaki	PROPN
ajlm-760	187	15	p	p	PROPN
ajlm-760	187	16	,	,	PUNCT
ajlm-760	187	17	hart	hart	PROPN
ajlm-760	187	18	ca	can	AUX
ajlm-760	187	19	.	.	PUNCT
ajlm-760	188	1	analysis	analysis	NOUN
ajlm-760	188	2	of	of	ADP
ajlm-760	188	3	salmonella	salmonella	PROPN
ajlm-760	188	4	enterica	enterica	PROPN
ajlm-760	188	5	serotype	serotype	PROPN
ajlm-760	188	6	typhimurium	typhimurium	NOUN
ajlm-760	188	7	by	by	ADP
ajlm-760	188	8	phage	phage	NOUN
ajlm-760	188	9	typing	typing	NOUN
ajlm-760	188	10	,	,	PUNCT
ajlm-760	188	11	antimicrobial	antimicrobial	ADJ
ajlm-760	188	12	susceptibility	susceptibility	NOUN
ajlm-760	188	13	and	and	CCONJ
ajlm-760	188	14	pulsed	pulse	VERB
ajlm-760	188	15	-	-	PUNCT
ajlm-760	188	16	field	field	NOUN
ajlm-760	188	17	gel	gel	NOUN
ajlm-760	188	18	electrophoresis	electrophoresis	NOUN
ajlm-760	188	19	.	.	PUNCT
ajlm-760	189	1	j	j	PROPN
ajlm-760	189	2	med	med	PROPN
ajlm-760	189	3	microbiol	microbiol	PROPN
ajlm-760	189	4	.	.	PUNCT
ajlm-760	190	1	1999;48(11):1037–1042	1999;48(11):1037–1042	NUM
ajlm-760	190	2	.	.	PUNCT
ajlm-760	191	1	https://doi.org/10.1099/00222615-48-11-1037	https://doi.org/10.1099/00222615-48-11-1037	PROPN
ajlm-760	191	2	gordon	gordon	PROPN
ajlm-760	191	3	ma	ma	PROPN
ajlm-760	191	4	,	,	PUNCT
ajlm-760	191	5	graham	graham	PROPN
ajlm-760	191	6	sm	sm	PROPN
ajlm-760	191	7	,	,	PUNCT
ajlm-760	191	8	walsh	walsh	PROPN
ajlm-760	191	9	al	al	PROPN
ajlm-760	191	10	,	,	PUNCT
ajlm-760	191	11	et	et	PROPN
ajlm-760	191	12	al	al	PROPN
ajlm-760	191	13	.	.	PUNCT
ajlm-760	192	1	epidemics	epidemic	NOUN
ajlm-760	192	2	of	of	ADP
ajlm-760	192	3	invasive	invasive	ADJ
ajlm-760	192	4	salmonella	salmonella	PROPN
ajlm-760	192	5	enterica	enterica	PROPN
ajlm-760	192	6	serovar	serovar	NOUN
ajlm-760	192	7	enteritidis	enteritidis	PROPN
ajlm-760	192	8	and	and	CCONJ
ajlm-760	192	9	s.	s.	PROPN
ajlm-760	192	10	enterica	enterica	PROPN
ajlm-760	192	11	serovar	serovar	PROPN
ajlm-760	192	12	typhimurium	typhimurium	NOUN
ajlm-760	192	13	infection	infection	NOUN
ajlm-760	192	14	associated	associate	VERB
ajlm-760	192	15	with	with	ADP
ajlm-760	192	16	multidrug	multidrug	NOUN
ajlm-760	192	17	resistance	resistance	NOUN
ajlm-760	192	18	among	among	ADP
ajlm-760	192	19	adults	adult	NOUN
ajlm-760	192	20	and	and	CCONJ
ajlm-760	192	21	children	child	NOUN
ajlm-760	192	22	in	in	ADP
ajlm-760	192	23	malawi	malawi	PROPN
ajlm-760	192	24	.	.	PUNCT
ajlm-760	193	1	clin	clin	PROPN
ajlm-760	193	2	infect	infect	PROPN
ajlm-760	193	3	dis	dis	PROPN
ajlm-760	193	4	.	.	PUNCT
ajlm-760	194	1	2008;46(7):963–969	2008;46(7):963–969	NUM
ajlm-760	194	2	.	.	PUNCT
ajlm-760	195	1	https://doi.org/10.1086/529146	https://doi.org/10.1086/529146	X
ajlm-760	195	2	feasey	feasey	ADJ
ajlm-760	195	3	na	na	NOUN
ajlm-760	195	4	,	,	PUNCT
ajlm-760	195	5	archer	archer	NOUN
ajlm-760	195	6	bn	bn	NOUN
ajlm-760	195	7	,	,	PUNCT
ajlm-760	195	8	heyderman	heyderman	PROPN
ajlm-760	195	9	rs	rs	PROPN
ajlm-760	195	10	,	,	PUNCT
ajlm-760	195	11	et	et	PROPN
ajlm-760	195	12	al	al	PROPN
ajlm-760	195	13	.	.	PUNCT
ajlm-760	195	14	typhoid	typhoid	NOUN
ajlm-760	195	15	fever	fever	NOUN
ajlm-760	195	16	and	and	CCONJ
ajlm-760	195	17	invasive	invasive	ADJ
ajlm-760	195	18	nontyphoid	nontyphoid	ADJ
ajlm-760	195	19	salmonellosis	salmonellosis	NOUN
ajlm-760	195	20	,	,	PUNCT
ajlm-760	195	21	malawi	malawi	PROPN
ajlm-760	195	22	and	and	CCONJ
ajlm-760	195	23	south	south	PROPN
ajlm-760	195	24	africa	africa	PROPN
ajlm-760	195	25	.	.	PUNCT
ajlm-760	196	1	emerg	emerg	PROPN
ajlm-760	196	2	infect	infect	PROPN
ajlm-760	196	3	dis	dis	PROPN
ajlm-760	196	4	.	.	PUNCT
ajlm-760	197	1	2010;16(9):1448–1451	2010;16(9):1448–1451	NUM
ajlm-760	197	2	.	.	PUNCT
ajlm-760	198	1	https://doi.org/10.3201/eid1609.100125	https://doi.org/10.3201/eid1609.100125	NOUN
ajlm-760	199	1	kingsley	kingsley	PROPN
ajlm-760	199	2	ra	ra	PROPN
ajlm-760	199	3	,	,	PUNCT
ajlm-760	199	4	msefula	msefula	ADJ
ajlm-760	199	5	cl	cl	NOUN
ajlm-760	199	6	,	,	PUNCT
ajlm-760	199	7	thomson	thomson	PROPN
ajlm-760	199	8	nr	nr	PROPN
ajlm-760	199	9	,	,	PUNCT
ajlm-760	199	10	et	et	PROPN
ajlm-760	199	11	al	al	PROPN
ajlm-760	199	12	.	.	PUNCT
ajlm-760	199	13	epidemic	epidemic	NOUN
ajlm-760	199	14	multiple	multiple	ADJ
ajlm-760	199	15	drug	drug	NOUN
ajlm-760	199	16	resistant	resistant	ADJ
ajlm-760	199	17	salmonella	salmonella	NOUN
ajlm-760	199	18	typhimurium	typhimurium	NOUN
ajlm-760	199	19	causing	cause	VERB
ajlm-760	199	20	invasive	invasive	ADJ
ajlm-760	199	21	disease	disease	NOUN
ajlm-760	199	22	in	in	ADP
ajlm-760	199	23	sub	sub	ADJ
ajlm-760	199	24	-	-	ADJ
ajlm-760	199	25	saharan	saharan	ADJ
ajlm-760	199	26	africa	africa	PROPN
ajlm-760	199	27	have	have	VERB
ajlm-760	199	28	a	a	DET
ajlm-760	199	29	distinct	distinct	ADJ
ajlm-760	199	30	genotype	genotype	NOUN
ajlm-760	199	31	.	.	PUNCT
ajlm-760	200	1	genome	genome	NOUN
ajlm-760	200	2	res	re	NOUN
ajlm-760	200	3	.	.	PUNCT
ajlm-760	201	1	2009;19(12):2279–2287	2009;19(12):2279–2287	NUM
ajlm-760	201	2	.	.	PUNCT
ajlm-760	202	1	https://doi.org/10.1101/gr.091017.109	https://doi.org/10.1101/gr.091017.109	PROPN
ajlm-760	202	2	kariuki	kariuki	PROPN
ajlm-760	202	3	s	s	PROPN
ajlm-760	202	4	,	,	PUNCT
ajlm-760	202	5	okoro	okoro	ADP
ajlm-760	202	6	c	c	NOUN
ajlm-760	202	7	,	,	PUNCT
ajlm-760	202	8	kiiru	kiiru	PROPN
ajlm-760	202	9	j	j	PROPN
ajlm-760	202	10	,	,	PUNCT
ajlm-760	202	11	et	et	PROPN
ajlm-760	202	12	al	al	PROPN
ajlm-760	202	13	.	.	PUNCT
ajlm-760	202	14	ceftriaxone	ceftriaxone	NOUN
ajlm-760	202	15	-	-	PUNCT
ajlm-760	202	16	resistant	resistant	ADJ
ajlm-760	202	17	salmonella	salmonella	NOUN
ajlm-760	202	18	enterica	enterica	PROPN
ajlm-760	202	19	serotype	serotype	PROPN
ajlm-760	202	20	typhimurium	typhimurium	PROPN
ajlm-760	202	21	sequence	sequence	NOUN
ajlm-760	202	22	type	type	NOUN
ajlm-760	202	23	313	313	NUM
ajlm-760	202	24	from	from	ADP
ajlm-760	202	25	kenyan	kenyan	ADJ
ajlm-760	202	26	patients	patient	NOUN
ajlm-760	202	27	is	be	AUX
ajlm-760	202	28	associated	associate	VERB
ajlm-760	202	29	with	with	ADP
ajlm-760	202	30	the	the	DET
ajlm-760	202	31	blactx	blactx	NOUN
ajlm-760	202	32	-	-	PUNCT
ajlm-760	202	33	m-15	m-15	NOUN
ajlm-760	202	34	gene	gene	NOUN
ajlm-760	202	35	on	on	ADP
ajlm-760	202	36	a	a	DET
ajlm-760	202	37	novel	novel	ADJ
ajlm-760	202	38	inchi2	inchi2	NOUN
ajlm-760	202	39	plasmid	plasmid	NOUN
ajlm-760	202	40	.	.	PUNCT
ajlm-760	203	1	antimicrob	antimicrob	PROPN
ajlm-760	203	2	agents	agents	PROPN
ajlm-760	203	3	chemother	chemother	PROPN
ajlm-760	203	4	.	.	PUNCT
ajlm-760	204	1	2015;59(6):3133–3139	2015;59(6):3133–3139	NOUN
ajlm-760	204	2	.	.	PUNCT
ajlm-760	205	1	https://doi.org/10.1128/aac.00078-15	https://doi.org/10.1128/aac.00078-15	PROPN
ajlm-760	205	2	leekitcharoenphon	leekitcharoenphon	VERB
ajlm-760	205	3	p	p	NOUN
ajlm-760	205	4	,	,	PUNCT
ajlm-760	205	5	friis	friis	NOUN
ajlm-760	205	6	c	c	NOUN
ajlm-760	205	7	,	,	PUNCT
ajlm-760	205	8	zankari	zankari	PROPN
ajlm-760	205	9	e	e	NOUN
ajlm-760	205	10	,	,	PUNCT
ajlm-760	205	11	et	et	PROPN
ajlm-760	205	12	al	al	PROPN
ajlm-760	205	13	.	.	PUNCT
ajlm-760	206	1	genomics	genomic	NOUN
ajlm-760	206	2	of	of	ADP
ajlm-760	206	3	an	an	DET
ajlm-760	206	4	emerging	emerge	VERB
ajlm-760	206	5	clone	clone	NOUN
ajlm-760	206	6	of	of	ADP
ajlm-760	206	7	salmonella	salmonella	NOUN
ajlm-760	206	8	serovar	serovar	VERB
ajlm-760	206	9	typhimurium	typhimurium	DET
ajlm-760	206	10	st313	st313	PROPN
ajlm-760	206	11	from	from	ADP
ajlm-760	206	12	nigeria	nigeria	PROPN
ajlm-760	206	13	and	and	CCONJ
ajlm-760	206	14	the	the	DET
ajlm-760	206	15	democratic	democratic	PROPN
ajlm-760	206	16	republic	republic	PROPN
ajlm-760	206	17	of	of	ADP
ajlm-760	206	18	congo	congo	PROPN
ajlm-760	206	19	.	.	PUNCT
ajlm-760	207	1	j	j	PROPN
ajlm-760	207	2	infect	infect	PROPN
ajlm-760	207	3	dev	dev	PROPN
ajlm-760	207	4	ctries	ctrie	NOUN
ajlm-760	207	5	.	.	PUNCT
ajlm-760	208	1	2013;7(10):696–706	2013;7(10):696–706	NOUN
ajlm-760	208	2	.	.	PROPN
ajlm-760	208	3	https://doi.org/10.3855/jidc.3328	https://doi.org/10.3855/jidc.3328	PROPN
ajlm-760	208	4	keddy	keddy	PROPN
ajlm-760	208	5	kh	kh	PROPN
ajlm-760	208	6	,	,	PUNCT
ajlm-760	208	7	sooka	sooka	VERB
ajlm-760	208	8	a	a	PRON
ajlm-760	208	9	,	,	PUNCT
ajlm-760	208	10	musekiwa	musekiwa	PROPN
ajlm-760	208	11	a	a	X
ajlm-760	208	12	,	,	PUNCT
ajlm-760	208	13	et	et	PROPN
ajlm-760	208	14	al	al	PROPN
ajlm-760	208	15	.	.	PROPN
ajlm-760	209	1	clinical	clinical	ADJ
ajlm-760	209	2	and	and	CCONJ
ajlm-760	209	3	microbiological	microbiological	ADJ
ajlm-760	209	4	features	feature	NOUN
ajlm-760	209	5	of	of	ADP
ajlm-760	209	6	salmonella	salmonella	NOUN
ajlm-760	209	7	meningitis	meningitis	NOUN
ajlm-760	209	8	in	in	ADP
ajlm-760	209	9	a	a	DET
ajlm-760	209	10	south	south	ADJ
ajlm-760	209	11	african	african	ADJ
ajlm-760	209	12	population	population	NOUN
ajlm-760	209	13	,	,	PUNCT
ajlm-760	209	14	2003–2013	2003–2013	NUM
ajlm-760	209	15	.	.	PUNCT
ajlm-760	210	1	clin	clin	PROPN
ajlm-760	210	2	infect	infect	PROPN
ajlm-760	210	3	dis	dis	PROPN
ajlm-760	210	4	.	.	PUNCT
ajlm-760	211	1	2015;61	2015;61	NUM
ajlm-760	211	2	(	(	PUNCT
ajlm-760	211	3	suppl	suppl	PROPN
ajlm-760	211	4	4):272–282	4):272–282	PROPN
ajlm-760	211	5	.	.	PUNCT
ajlm-760	212	1	https://doi.org/10.1093/cid/civ685	https://doi.org/10.1093/cid/civ685	ADJ
ajlm-760	212	2	okoro	okoro	NOUN
ajlm-760	212	3	ck	ck	PROPN
ajlm-760	212	4	,	,	PUNCT
ajlm-760	212	5	kingsley	kingsley	PROPN
ajlm-760	212	6	ra	ra	PROPN
ajlm-760	212	7	,	,	PUNCT
ajlm-760	212	8	quail	quail	PROPN
ajlm-760	212	9	ma	ma	PROPN
ajlm-760	212	10	,	,	PUNCT
ajlm-760	212	11	et	et	PROPN
ajlm-760	212	12	al	al	PROPN
ajlm-760	212	13	.	.	PROPN
ajlm-760	212	14	high	high	ADJ
ajlm-760	212	15	-	-	PUNCT
ajlm-760	212	16	resolution	resolution	NOUN
ajlm-760	212	17	single	single	ADJ
ajlm-760	212	18	nucleotide	nucleotide	ADJ
ajlm-760	212	19	polymorphism	polymorphism	NOUN
ajlm-760	212	20	analysis	analysis	NOUN
ajlm-760	212	21	distinguishes	distinguish	VERB
ajlm-760	212	22	recrudescence	recrudescence	NOUN
ajlm-760	212	23	and	and	CCONJ
ajlm-760	212	24	reinfection	reinfection	NOUN
ajlm-760	212	25	in	in	ADP
ajlm-760	212	26	recurrent	recurrent	ADJ
ajlm-760	212	27	invasive	invasive	ADJ
ajlm-760	212	28	nontyphoidal	nontyphoidal	ADJ
ajlm-760	212	29	salmonella	salmonella	NOUN
ajlm-760	212	30	typhimurium	typhimurium	NOUN
ajlm-760	212	31	disease	disease	NOUN
ajlm-760	212	32	.	.	PUNCT
ajlm-760	213	1	clin	clin	PROPN
ajlm-760	213	2	infect	infect	PROPN
ajlm-760	213	3	dis	dis	PROPN
ajlm-760	213	4	.	.	PUNCT
ajlm-760	214	1	2012;54(7):955–963	2012;54(7):955–963	NUM
ajlm-760	214	2	.	.	PUNCT
ajlm-760	215	1	https://doi.org/10.1093/cid/cir1032	https://doi.org/10.1093/cid/cir1032	PROPN
ajlm-760	215	2	feasey	feasey	NOUN
ajlm-760	215	3	na	na	PROPN
ajlm-760	215	4	,	,	PUNCT
ajlm-760	215	5	hadfield	hadfield	PROPN
ajlm-760	215	6	j	j	PROPN
ajlm-760	215	7	,	,	PUNCT
ajlm-760	215	8	keddy	keddy	PROPN
ajlm-760	215	9	kh	kh	PROPN
ajlm-760	215	10	,	,	PUNCT
ajlm-760	215	11	et	et	PROPN
ajlm-760	215	12	al	al	PROPN
ajlm-760	215	13	.	.	PROPN
ajlm-760	215	14	distinct	distinct	ADJ
ajlm-760	215	15	salmonella	salmonella	NOUN
ajlm-760	215	16	enteritidis	enteritidis	NOUN
ajlm-760	215	17	lineages	lineage	NOUN
ajlm-760	215	18	associated	associate	VERB
ajlm-760	215	19	with	with	ADP
ajlm-760	215	20	enterocolitis	enterocolitis	NOUN
ajlm-760	215	21	in	in	ADP
ajlm-760	215	22	high	high	ADJ
ajlm-760	215	23	-	-	PUNCT
ajlm-760	215	24	income	income	NOUN
ajlm-760	215	25	settings	setting	NOUN
ajlm-760	215	26	and	and	CCONJ
ajlm-760	215	27	invasive	invasive	ADJ
ajlm-760	215	28	disease	disease	NOUN
ajlm-760	215	29	in	in	ADP
ajlm-760	215	30	low	low	ADJ
ajlm-760	215	31	-	-	PUNCT
ajlm-760	215	32	income	income	NOUN
ajlm-760	215	33	settings	setting	NOUN
ajlm-760	215	34	.	.	PUNCT
ajlm-760	216	1	nat	nat	PROPN
ajlm-760	216	2	genet	genet	PROPN
ajlm-760	216	3	.	.	PUNCT
ajlm-760	217	1	2016;48(10):1211–1217	2016;48(10):1211–1217	NUM
ajlm-760	217	2	.	.	PUNCT
ajlm-760	218	1	https://doi.org/10.1038/ng.3644	https://doi.org/10.1038/ng.3644	X
ajlm-760	218	2	niehaus	niehaus	PROPN
ajlm-760	218	3	aj	aj	PROPN
ajlm-760	218	4	,	,	PUNCT
ajlm-760	218	5	apalata	apalata	VERB
ajlm-760	218	6	t	t	PROPN
ajlm-760	218	7	,	,	PUNCT
ajlm-760	218	8	coovadia	coovadia	PROPN
ajlm-760	218	9	ym	ym	PROPN
ajlm-760	218	10	,	,	PUNCT
ajlm-760	218	11	smith	smith	PROPN
ajlm-760	218	12	am	am	PROPN
ajlm-760	218	13	,	,	PUNCT
ajlm-760	218	14	moodley	moodley	PROPN
ajlm-760	218	15	p.	p.	PROPN
ajlm-760	218	16	an	an	DET
ajlm-760	218	17	outbreak	outbreak	NOUN
ajlm-760	218	18	of	of	ADP
ajlm-760	218	19	foodborne	foodborne	ADJ
ajlm-760	218	20	salmonellosis	salmonellosis	NOUN
ajlm-760	218	21	in	in	ADP
ajlm-760	218	22	rural	rural	ADJ
ajlm-760	218	23	kwazulu	kwazulu	NOUN
ajlm-760	218	24	-	-	PUNCT
ajlm-760	218	25	natal	natal	ADJ
ajlm-760	218	26	,	,	PUNCT
ajlm-760	218	27	south	south	PROPN
ajlm-760	218	28	africa	africa	PROPN
ajlm-760	218	29	.	.	PUNCT
ajlm-760	219	1	foodborne	foodborne	PROPN
ajlm-760	219	2	pathog	pathog	PROPN
ajlm-760	219	3	dis	dis	PROPN
ajlm-760	219	4	.	.	PUNCT
ajlm-760	220	1	2011;8(6):693–697	2011;8(6):693–697	X
ajlm-760	220	2	.	.	X
ajlm-760	220	3	https://doi.org/10.1089/fpd.2010.0749	https://doi.org/10.1089/fpd.2010.0749	NOUN
ajlm-760	220	4	akinyemi	akinyemi	ADP
ajlm-760	220	5	ko	ko	PROPN
ajlm-760	220	6	,	,	PUNCT
ajlm-760	220	7	philipp	philipp	PROPN
ajlm-760	220	8	w	w	PROPN
ajlm-760	220	9	,	,	PUNCT
ajlm-760	220	10	beyer	beyer	PROPN
ajlm-760	220	11	w	w	PROPN
ajlm-760	220	12	,	,	PUNCT
ajlm-760	220	13	bohm	bohm	PROPN
ajlm-760	220	14	r.	r.	PROPN
ajlm-760	220	15	application	application	NOUN
ajlm-760	220	16	of	of	ADP
ajlm-760	220	17	phage	phage	NOUN
ajlm-760	220	18	typing	typing	NOUN
ajlm-760	220	19	and	and	CCONJ
ajlm-760	220	20	pulsed	pulse	VERB
ajlm-760	220	21	-	-	PUNCT
ajlm-760	220	22	field	field	NOUN
ajlm-760	220	23	gel	gel	NOUN
ajlm-760	220	24	electrophoresis	electrophoresis	NOUN
ajlm-760	220	25	to	to	PART
ajlm-760	220	26	analyse	analyse	VERB
ajlm-760	220	27	salmonella	salmonella	PROPN
ajlm-760	220	28	enterica	enterica	PROPN
ajlm-760	220	29	isolates	isolate	NOUN
ajlm-760	220	30	from	from	ADP
ajlm-760	220	31	a	a	DET
ajlm-760	220	32	suspected	suspect	VERB
ajlm-760	220	33	outbreak	outbreak	NOUN
ajlm-760	220	34	in	in	ADP
ajlm-760	220	35	lagos	lagos	PROPN
ajlm-760	220	36	,	,	PUNCT
ajlm-760	220	37	nigeria	nigeria	PROPN
ajlm-760	220	38	.	.	PUNCT
ajlm-760	221	1	j	j	PROPN
ajlm-760	221	2	infect	infect	PROPN
ajlm-760	221	3	dev	dev	PROPN
ajlm-760	221	4	ctries	ctrie	NOUN
ajlm-760	221	5	.	.	PUNCT
ajlm-760	222	1	2010;4(12):828–833	2010;4(12):828–833	NUM
ajlm-760	222	2	.	.	PUNCT
ajlm-760	222	3	https://doi.org/10.3855/jidc.744	https://doi.org/10.3855/jidc.744	PROPN
ajlm-760	223	1	vaagland	vaagland	PROPN
ajlm-760	223	2	h	h	PROPN
ajlm-760	223	3	,	,	PUNCT
ajlm-760	223	4	blomberg	blomberg	PROPN
ajlm-760	223	5	b	b	PROPN
ajlm-760	223	6	,	,	PUNCT
ajlm-760	223	7	kruger	kruger	PROPN
ajlm-760	223	8	c	c	PROPN
ajlm-760	223	9	,	,	PUNCT
ajlm-760	223	10	naman	naman	NOUN
ajlm-760	223	11	n	n	CCONJ
ajlm-760	223	12	,	,	PUNCT
ajlm-760	223	13	jureen	jureen	PROPN
ajlm-760	223	14	r	r	NOUN
ajlm-760	223	15	,	,	PUNCT
ajlm-760	223	16	langeland	langeland	NOUN
ajlm-760	223	17	n.	n.	NOUN
ajlm-760	223	18	nosocomial	nosocomial	ADJ
ajlm-760	223	19	outbreak	outbreak	NOUN
ajlm-760	223	20	of	of	ADP
ajlm-760	223	21	neonatal	neonatal	ADJ
ajlm-760	223	22	salmonella	salmonella	PROPN
ajlm-760	223	23	enterica	enterica	PROPN
ajlm-760	223	24	serotype	serotype	PROPN
ajlm-760	223	25	enteritidis	enteritidi	NOUN
ajlm-760	223	26	meningitis	meningiti	VERB
ajlm-760	223	27	in	in	ADP
ajlm-760	223	28	a	a	DET
ajlm-760	223	29	rural	rural	ADJ
ajlm-760	223	30	hospital	hospital	NOUN
ajlm-760	223	31	in	in	ADP
ajlm-760	223	32	northern	northern	ADJ
ajlm-760	223	33	tanzania	tanzania	PROPN
ajlm-760	223	34	.	.	PUNCT
ajlm-760	224	1	bmc	bmc	PROPN
ajlm-760	224	2	infect	infect	PROPN
ajlm-760	224	3	dis	dis	PROPN
ajlm-760	224	4	.	.	PUNCT
ajlm-760	224	5	2004;4:35	2004;4:35	PROPN
ajlm-760	224	6	.	.	PUNCT
ajlm-760	225	1	https://doi.org/10.1186/1471-2334-4-35	https://doi.org/10.1186/1471-2334-4-35	PROPN
ajlm-760	225	2	muvhali	muvhali	PROPN
ajlm-760	225	3	m	m	PROPN
ajlm-760	225	4	,	,	PUNCT
ajlm-760	225	5	smith	smith	PROPN
ajlm-760	225	6	am	am	PROPN
ajlm-760	225	7	,	,	PUNCT
ajlm-760	225	8	rakgantso	rakgantso	PROPN
ajlm-760	225	9	am	am	PROPN
ajlm-760	225	10	,	,	PUNCT
ajlm-760	225	11	keddy	keddy	PROPN
ajlm-760	225	12	kh	kh	PROPN
ajlm-760	225	13	.	.	PROPN
ajlm-760	225	14	investigation	investigation	NOUN
ajlm-760	225	15	of	of	ADP
ajlm-760	225	16	salmonella	salmonella	NOUN
ajlm-760	225	17	enteritidis	enteritidis	NOUN
ajlm-760	225	18	outbreaks	outbreak	NOUN
ajlm-760	225	19	in	in	ADP
ajlm-760	225	20	south	south	PROPN
ajlm-760	225	21	africa	africa	PROPN
ajlm-760	225	22	using	use	VERB
ajlm-760	225	23	multi	multi	ADJ
ajlm-760	225	24	-	-	ADJ
ajlm-760	225	25	locus	locus	ADJ
ajlm-760	225	26	variable	variable	ADJ
ajlm-760	225	27	-	-	PUNCT
ajlm-760	225	28	number	number	NOUN
ajlm-760	225	29	tandem	tandem	NOUN
ajlm-760	225	30	-	-	PUNCT
ajlm-760	225	31	repeats	repeat	NOUN
ajlm-760	225	32	analysis	analysis	NOUN
ajlm-760	225	33	,	,	PUNCT
ajlm-760	225	34	2013–2015	2013–2015	NUM
ajlm-760	225	35	.	.	PUNCT
ajlm-760	226	1	bmc	bmc	PROPN
ajlm-760	226	2	infect	infect	PROPN
ajlm-760	226	3	dis	dis	PROPN
ajlm-760	226	4	.	.	PUNCT
ajlm-760	227	1	2017;17(1):661	2017;17(1):661	NUM
ajlm-760	227	2	.	.	PUNCT
ajlm-760	228	1	https://doi.org/10.1186/s12879-017-2751-8	https://doi.org/10.1186/s12879-017-2751-8	NUM
ajlm-760	228	2	wadula	wadula	PROPN
ajlm-760	228	3	j	j	PROPN
ajlm-760	228	4	,	,	PUNCT
ajlm-760	228	5	von	von	PROPN
ajlm-760	228	6	gottberg	gottberg	PROPN
ajlm-760	228	7	a	a	PROPN
ajlm-760	228	8	,	,	PUNCT
ajlm-760	228	9	kilner	kilner	PROPN
ajlm-760	228	10	d	d	PROPN
ajlm-760	228	11	,	,	PUNCT
ajlm-760	228	12	et	et	PROPN
ajlm-760	228	13	al	al	PROPN
ajlm-760	228	14	.	.	PUNCT
ajlm-760	228	15	nosocomial	nosocomial	ADJ
ajlm-760	228	16	outbreak	outbreak	NOUN
ajlm-760	228	17	of	of	ADP
ajlm-760	228	18	extended	extend	VERB
ajlm-760	228	19	-	-	PUNCT
ajlm-760	228	20	spectrum	spectrum	NOUN
ajlm-760	228	21	beta	beta	NOUN
ajlm-760	228	22	-	-	PUNCT
ajlm-760	228	23	lactamase	lactamase	NOUN
ajlm-760	228	24	-	-	PUNCT
ajlm-760	228	25	producing	produce	VERB
ajlm-760	228	26	salmonella	salmonella	NOUN
ajlm-760	228	27	isangi	isangi	VERB
ajlm-760	228	28	in	in	ADP
ajlm-760	228	29	pediatric	pediatric	ADJ
ajlm-760	228	30	wards	ward	NOUN
ajlm-760	228	31	.	.	PUNCT
ajlm-760	229	1	pediatr	pediatr	ADJ
ajlm-760	229	2	infect	infect	VERB
ajlm-760	229	3	dis	dis	PROPN
ajlm-760	229	4	j.	j.	PROPN
ajlm-760	229	5	2006;25(9):843–844	2006;25(9):843–844	PROPN
ajlm-760	229	6	.	.	PUNCT
ajlm-760	230	1	https://doi.org/10.1097/01.inf.0000233543.78070.a2	https://doi.org/10.1097/01.inf.0000233543.78070.a2	PROPN
ajlm-760	230	2	smith	smith	PROPN
ajlm-760	230	3	am	be	AUX
ajlm-760	230	4	,	,	PUNCT
ajlm-760	230	5	mthanti	mthanti	PROPN
ajlm-760	230	6	ma	ma	PROPN
ajlm-760	230	7	,	,	PUNCT
ajlm-760	230	8	haumann	haumann	PROPN
ajlm-760	230	9	c	c	X
ajlm-760	230	10	,	,	PUNCT
ajlm-760	230	11	et	et	PROPN
ajlm-760	230	12	al	al	PROPN
ajlm-760	230	13	.	.	PUNCT
ajlm-760	231	1	nosocomial	nosocomial	ADJ
ajlm-760	231	2	outbreak	outbreak	NOUN
ajlm-760	231	3	of	of	ADP
ajlm-760	231	4	salmonella	salmonella	PROPN
ajlm-760	231	5	enterica	enterica	PROPN
ajlm-760	231	6	serovar	serovar	PROPN
ajlm-760	231	7	typhimurium	typhimurium	NOUN
ajlm-760	231	8	primarily	primarily	ADV
ajlm-760	231	9	affecting	affect	VERB
ajlm-760	231	10	a	a	DET
ajlm-760	231	11	pediatric	pediatric	ADJ
ajlm-760	231	12	ward	ward	NOUN
ajlm-760	231	13	in	in	ADP
ajlm-760	231	14	south	south	PROPN
ajlm-760	231	15	africa	africa	PROPN
ajlm-760	231	16	in	in	ADP
ajlm-760	231	17	2012	2012	NUM
ajlm-760	231	18	.	.	PUNCT
ajlm-760	232	1	j	j	PROPN
ajlm-760	232	2	clin	clin	PROPN
ajlm-760	232	3	microbiol	microbiol	PROPN
ajlm-760	232	4	.	.	PUNCT
ajlm-760	233	1	2014;52(2):627–631	2014;52(2):627–631	X
ajlm-760	233	2	.	.	PUNCT
ajlm-760	234	1	https://doi.org/10.1128/jcm.02422-13	https://doi.org/10.1128/jcm.02422-13	PROPN
ajlm-760	234	2	kariuki	kariuki	PROPN
ajlm-760	234	3	s	s	PROPN
ajlm-760	234	4	,	,	PUNCT
ajlm-760	234	5	revathi	revathi	PROPN
ajlm-760	234	6	g	g	PROPN
ajlm-760	234	7	,	,	PUNCT
ajlm-760	234	8	muyodi	muyodi	PROPN
ajlm-760	234	9	j	j	PROPN
ajlm-760	234	10	,	,	PUNCT
ajlm-760	234	11	et	et	PROPN
ajlm-760	234	12	al	al	PROPN
ajlm-760	234	13	.	.	PUNCT
ajlm-760	234	14	characterization	characterization	NOUN
ajlm-760	234	15	of	of	ADP
ajlm-760	234	16	multidrug	multidrug	NOUN
ajlm-760	234	17	-	-	PUNCT
ajlm-760	234	18	resistant	resistant	ADJ
ajlm-760	234	19	typhoid	typhoid	NOUN
ajlm-760	234	20	outbreaks	outbreak	NOUN
ajlm-760	234	21	in	in	ADP
ajlm-760	234	22	kenya	kenya	PROPN
ajlm-760	234	23	.	.	PUNCT
ajlm-760	235	1	j	j	PROPN
ajlm-760	235	2	clin	clin	PROPN
ajlm-760	235	3	microbiol	microbiol	PROPN
ajlm-760	235	4	.	.	PUNCT
ajlm-760	236	1	2004;42(4):1477–1482	2004;42(4):1477–1482	VERB
ajlm-760	236	2	.	.	PUNCT
ajlm-760	237	1	https://doi.org/10.1128/jcm.42.4.1477-1482.2004	https://doi.org/10.1128/jcm.42.4.1477-1482.2004	PROPN
ajlm-760	237	2	keddy	keddy	PROPN
ajlm-760	237	3	kh	kh	PROPN
ajlm-760	237	4	,	,	PUNCT
ajlm-760	237	5	smith	smith	PROPN
ajlm-760	237	6	am	am	PROPN
ajlm-760	237	7	,	,	PUNCT
ajlm-760	237	8	sooka	sooka	VERB
ajlm-760	237	9	a	a	PRON
ajlm-760	237	10	,	,	PUNCT
ajlm-760	237	11	ismail	ismail	PROPN
ajlm-760	237	12	h	h	PROPN
ajlm-760	237	13	,	,	PUNCT
ajlm-760	237	14	oliver	oliver	PROPN
ajlm-760	237	15	s.	s.	PROPN
ajlm-760	237	16	fluoroquinolone	fluoroquinolone	NOUN
ajlm-760	237	17	-	-	PUNCT
ajlm-760	237	18	resistant	resistant	ADJ
ajlm-760	237	19	typhoid	typhoid	NOUN
ajlm-760	237	20	,	,	PUNCT
ajlm-760	237	21	south	south	PROPN
ajlm-760	237	22	africa	africa	PROPN
ajlm-760	237	23	.	.	PUNCT
ajlm-760	238	1	emerg	emerg	PROPN
ajlm-760	238	2	infect	infect	PROPN
ajlm-760	238	3	dis	dis	PROPN
ajlm-760	238	4	.	.	PUNCT
ajlm-760	239	1	2010;16(5):879–880	2010;16(5):879–880	NUM
ajlm-760	239	2	.	.	PUNCT
ajlm-760	240	1	https://doi.org/10.3201/eid1605.091917	https://doi.org/10.3201/eid1605.091917	VERB
ajlm-760	240	2	lutterloh	lutterloh	PROPN
ajlm-760	240	3	e	e	NOUN
ajlm-760	240	4	,	,	PUNCT
ajlm-760	240	5	likaka	likaka	X
ajlm-760	240	6	a	a	PRON
ajlm-760	240	7	,	,	PUNCT
ajlm-760	240	8	sejvar	sejvar	PROPN
ajlm-760	240	9	j	j	PROPN
ajlm-760	240	10	,	,	PUNCT
ajlm-760	240	11	et	et	PROPN
ajlm-760	240	12	al	al	PROPN
ajlm-760	240	13	.	.	PROPN
ajlm-760	240	14	multidrug	multidrug	NOUN
ajlm-760	240	15	-	-	PUNCT
ajlm-760	240	16	resistant	resistant	ADJ
ajlm-760	240	17	typhoid	typhoid	NOUN
ajlm-760	240	18	fever	fever	NOUN
ajlm-760	240	19	with	with	ADP
ajlm-760	240	20	neurologic	neurologic	ADJ
ajlm-760	240	21	findings	finding	NOUN
ajlm-760	240	22	on	on	ADP
ajlm-760	240	23	the	the	DET
ajlm-760	240	24	malawi	malawi	PROPN
ajlm-760	240	25	-	-	PUNCT
ajlm-760	240	26	mozambique	mozambique	PROPN
ajlm-760	240	27	border	border	NOUN
ajlm-760	240	28	.	.	PUNCT
ajlm-760	241	1	clin	clin	PROPN
ajlm-760	241	2	infect	infect	PROPN
ajlm-760	241	3	dis	dis	PROPN
ajlm-760	241	4	.	.	PUNCT
ajlm-760	242	1	2012;54(8):1100–1106	2012;54(8):1100–1106	NOUN
ajlm-760	242	2	.	.	PUNCT
ajlm-760	243	1	https://doi.org/10.1093/cid/cis012	https://doi.org/10.1093/cid/cis012	PROPN
ajlm-760	243	2	neil	neil	PROPN
ajlm-760	243	3	kp	kp	PROPN
ajlm-760	243	4	,	,	PUNCT
ajlm-760	243	5	sodha	sodha	PROPN
ajlm-760	243	6	sv	sv	PROPN
ajlm-760	243	7	,	,	PUNCT
ajlm-760	243	8	lukwago	lukwago	PROPN
ajlm-760	243	9	l	l	PROPN
ajlm-760	243	10	,	,	PUNCT
ajlm-760	243	11	et	et	PROPN
ajlm-760	243	12	al	al	PROPN
ajlm-760	243	13	.	.	PUNCT
ajlm-760	244	1	a	a	DET
ajlm-760	244	2	large	large	ADJ
ajlm-760	244	3	outbreak	outbreak	NOUN
ajlm-760	244	4	of	of	ADP
ajlm-760	244	5	typhoid	typhoid	NOUN
ajlm-760	244	6	fever	fever	NOUN
ajlm-760	244	7	associated	associate	VERB
ajlm-760	244	8	with	with	ADP
ajlm-760	244	9	a	a	DET
ajlm-760	244	10	high	high	ADJ
ajlm-760	244	11	rate	rate	NOUN
ajlm-760	244	12	of	of	ADP
ajlm-760	244	13	intestinal	intestinal	ADJ
ajlm-760	244	14	perforation	perforation	NOUN
ajlm-760	244	15	in	in	ADP
ajlm-760	244	16	kasese	kasese	ADJ
ajlm-760	244	17	district	district	NOUN
ajlm-760	244	18	,	,	PUNCT
ajlm-760	244	19	uganda	uganda	PROPN
ajlm-760	244	20	,	,	PUNCT
ajlm-760	244	21	2008–2009	2008–2009	NUM
ajlm-760	244	22	.	.	PUNCT
ajlm-760	245	1	clin	clin	PROPN
ajlm-760	245	2	infect	infect	PROPN
ajlm-760	245	3	dis	dis	PROPN
ajlm-760	245	4	.	.	PUNCT
ajlm-760	245	5	2012;54(8):1091–1099	2012;54(8):1091–1099	NUM
ajlm-760	245	6	.	.	PUNCT
ajlm-760	246	1	https://doi.org/10.1093/cid/cis025	https://doi.org/10.1093/cid/cis025	PROPN
ajlm-760	246	2	walters	walters	PROPN
ajlm-760	246	3	ms	ms	PROPN
ajlm-760	246	4	,	,	PUNCT
ajlm-760	246	5	routh	routh	PROPN
ajlm-760	246	6	j	j	PROPN
ajlm-760	246	7	,	,	PUNCT
ajlm-760	246	8	mikoleit	mikoleit	PROPN
ajlm-760	246	9	m	m	PROPN
ajlm-760	246	10	,	,	PUNCT
ajlm-760	246	11	et	et	PROPN
ajlm-760	246	12	al	al	PROPN
ajlm-760	246	13	.	.	PUNCT
ajlm-760	246	14	shifts	shift	NOUN
ajlm-760	246	15	in	in	ADP
ajlm-760	246	16	geographic	geographic	ADJ
ajlm-760	246	17	distribution	distribution	NOUN
ajlm-760	246	18	and	and	CCONJ
ajlm-760	246	19	antimicrobial	antimicrobial	ADJ
ajlm-760	246	20	resistance	resistance	NOUN
ajlm-760	246	21	during	during	ADP
ajlm-760	246	22	a	a	DET
ajlm-760	246	23	prolonged	prolonged	ADJ
ajlm-760	246	24	typhoid	typhoid	NOUN
ajlm-760	246	25	fever	fever	NOUN
ajlm-760	246	26	outbreak	outbreak	NOUN
ajlm-760	246	27	–	–	PUNCT
ajlm-760	246	28	bundibugyo	bundibugyo	NOUN
ajlm-760	246	29	and	and	CCONJ
ajlm-760	246	30	kasese	kasese	ADJ
ajlm-760	246	31	districts	district	NOUN
ajlm-760	246	32	,	,	PUNCT
ajlm-760	246	33	uganda	uganda	PROPN
ajlm-760	246	34	,	,	PUNCT
ajlm-760	246	35	2009–2011	2009–2011	NUM
ajlm-760	246	36	.	.	PUNCT
ajlm-760	247	1	plos	plos	PROPN
ajlm-760	247	2	negl	negl	PROPN
ajlm-760	247	3	trop	trop	X
ajlm-760	247	4	dis	dis	PROPN
ajlm-760	247	5	.	.	PUNCT
ajlm-760	248	1	2014;8(3):e2726	2014;8(3):e2726	X
ajlm-760	248	2	.	.	PUNCT
ajlm-760	249	1	https://doi.org/10.1371/journal.pntd.0002726	https://doi.org/10.1371/journal.pntd.0002726	PROPN
ajlm-760	249	2	keddy	keddy	PROPN
ajlm-760	249	3	kh	kh	PROPN
ajlm-760	249	4	,	,	PUNCT
ajlm-760	249	5	sooka	sooka	VERB
ajlm-760	249	6	a	a	PRON
ajlm-760	249	7	,	,	PUNCT
ajlm-760	249	8	ismail	ismail	PROPN
ajlm-760	249	9	h	h	PROPN
ajlm-760	249	10	,	,	PUNCT
ajlm-760	249	11	et	et	PROPN
ajlm-760	249	12	al	al	PROPN
ajlm-760	249	13	.	.	PROPN
ajlm-760	250	1	molecular	molecular	ADJ
ajlm-760	250	2	epidemiological	epidemiological	ADJ
ajlm-760	250	3	investigation	investigation	NOUN
ajlm-760	250	4	of	of	ADP
ajlm-760	250	5	a	a	DET
ajlm-760	250	6	typhoid	typhoid	NOUN
ajlm-760	250	7	fever	fever	NOUN
ajlm-760	250	8	outbreak	outbreak	NOUN
ajlm-760	250	9	in	in	ADP
ajlm-760	250	10	south	south	PROPN
ajlm-760	250	11	africa	africa	PROPN
ajlm-760	250	12	,	,	PUNCT
ajlm-760	250	13	2005	2005	NUM
ajlm-760	250	14	:	:	PUNCT
ajlm-760	250	15	the	the	DET
ajlm-760	250	16	relationship	relationship	NOUN
ajlm-760	250	17	to	to	ADP
ajlm-760	250	18	a	a	DET
ajlm-760	250	19	previous	previous	ADJ
ajlm-760	250	20	epidemic	epidemic	NOUN
ajlm-760	250	21	in	in	ADP
ajlm-760	250	22	1993	1993	NUM
ajlm-760	250	23	.	.	PUNCT
ajlm-760	251	1	epidemiol	epidemiol	PROPN
ajlm-760	251	2	infect	infect	PROPN
ajlm-760	251	3	.	.	PUNCT
ajlm-760	252	1	2010;139:1239–1245	2010;139:1239–1245	X
ajlm-760	252	2	.	.	PUNCT
ajlm-760	253	1	https://doi.org/10.1017/s0950268810002207	https://doi.org/10.1017/s0950268810002207	X
ajlm-760	253	2	tau	tau	PROPN
ajlm-760	253	3	np	np	INTJ
ajlm-760	253	4	,	,	PUNCT
ajlm-760	253	5	smith	smith	PROPN
ajlm-760	253	6	am	am	PROPN
ajlm-760	253	7	,	,	PUNCT
ajlm-760	253	8	wain	wain	PROPN
ajlm-760	253	9	jr	jr	PROPN
ajlm-760	253	10	,	,	PUNCT
ajlm-760	253	11	et	et	PROPN
ajlm-760	253	12	al	al	PROPN
ajlm-760	253	13	.	.	PUNCT
ajlm-760	253	14	development	development	NOUN
ajlm-760	253	15	and	and	CCONJ
ajlm-760	253	16	evaluation	evaluation	NOUN
ajlm-760	253	17	of	of	ADP
ajlm-760	253	18	a	a	DET
ajlm-760	253	19	multiple	multiple	ADJ
ajlm-760	253	20	-	-	PUNCT
ajlm-760	253	21	locus	locus	ADJ
ajlm-760	253	22	variable	variable	ADJ
ajlm-760	253	23	-	-	PUNCT
ajlm-760	253	24	number	number	NOUN
ajlm-760	253	25	tandem	tandem	NOUN
ajlm-760	253	26	-	-	PUNCT
ajlm-760	253	27	repeats	repeat	VERB
ajlm-760	253	28	analysis	analysis	NOUN
ajlm-760	253	29	assay	assay	VERB
ajlm-760	253	30	for	for	ADP
ajlm-760	253	31	subtyping	subtype	VERB
ajlm-760	253	32	salmonella	salmonella	NOUN
ajlm-760	253	33	typhi	typhi	VERB
ajlm-760	253	34	strains	strain	NOUN
ajlm-760	253	35	from	from	ADP
ajlm-760	253	36	sub	sub	ADJ
ajlm-760	253	37	-	-	ADJ
ajlm-760	253	38	saharan	saharan	ADJ
ajlm-760	253	39	africa	africa	PROPN
ajlm-760	253	40	.	.	PUNCT
ajlm-760	254	1	j	j	PROPN
ajlm-760	254	2	med	med	PROPN
ajlm-760	254	3	microbiol	microbiol	PROPN
ajlm-760	254	4	.	.	PUNCT
ajlm-760	255	1	2017;66(7):937–945	2017;66(7):937–945	X
ajlm-760	255	2	.	.	X
ajlm-760	255	3	https://doi.org/10.1099/jmm.0.000526	https://doi.org/10.1099/jmm.0.000526	PROPN
ajlm-760	255	4	kariuki	kariuki	PROPN
ajlm-760	255	5	s	s	PROPN
ajlm-760	255	6	,	,	PUNCT
ajlm-760	255	7	revathi	revathi	PROPN
ajlm-760	255	8	g	g	PROPN
ajlm-760	255	9	,	,	PUNCT
ajlm-760	255	10	kiiru	kiiru	PROPN
ajlm-760	255	11	j	j	PROPN
ajlm-760	255	12	,	,	PUNCT
ajlm-760	256	1	et	et	PROPN
ajlm-760	256	2	al	al	PROPN
ajlm-760	256	3	.	.	PUNCT
ajlm-760	256	4	typhoid	typhoid	NOUN
ajlm-760	256	5	in	in	ADP
ajlm-760	256	6	kenya	kenya	PROPN
ajlm-760	256	7	is	be	AUX
ajlm-760	256	8	associated	associate	VERB
ajlm-760	256	9	with	with	ADP
ajlm-760	256	10	a	a	DET
ajlm-760	256	11	dominant	dominant	ADJ
ajlm-760	256	12	multidrug	multidrug	NOUN
ajlm-760	256	13	-	-	PUNCT
ajlm-760	256	14	resistant	resistant	ADJ
ajlm-760	256	15	salmonella	salmonella	NOUN
ajlm-760	256	16	enterica	enterica	PROPN
ajlm-760	256	17	serovar	serovar	PROPN
ajlm-760	256	18	typhi	typhi	NOUN
ajlm-760	256	19	haplotype	haplotype	NOUN
ajlm-760	256	20	that	that	PRON
ajlm-760	256	21	is	be	AUX
ajlm-760	256	22	also	also	ADV
ajlm-760	256	23	widespread	widespread	ADJ
ajlm-760	256	24	in	in	ADP
ajlm-760	256	25	southeast	southeast	PROPN
ajlm-760	256	26	asia	asia	PROPN
ajlm-760	256	27	.	.	PUNCT
ajlm-760	257	1	j	j	PROPN
ajlm-760	257	2	clin	clin	PROPN
ajlm-760	257	3	microbiol	microbiol	PROPN
ajlm-760	257	4	.	.	PUNCT
ajlm-760	258	1	2010;48(6):2171–2176	2010;48(6):2171–2176	PROPN
ajlm-760	258	2	.	.	PUNCT
ajlm-760	259	1	https://doi.org/10.1128/jcm.01983-09	https://doi.org/10.1128/jcm.01983-09	DET
ajlm-760	259	2	feasey	feasey	NOUN
ajlm-760	259	3	na	na	NOUN
ajlm-760	259	4	,	,	PUNCT
ajlm-760	259	5	gaskell	gaskell	PROPN
ajlm-760	259	6	k	k	PROPN
ajlm-760	259	7	,	,	PUNCT
ajlm-760	259	8	wong	wong	PROPN
ajlm-760	259	9	v	v	PROPN
ajlm-760	259	10	,	,	PUNCT
ajlm-760	259	11	et	et	PROPN
ajlm-760	259	12	al	al	PROPN
ajlm-760	259	13	.	.	PROPN
ajlm-760	259	14	rapid	rapid	ADJ
ajlm-760	259	15	emergence	emergence	NOUN
ajlm-760	259	16	of	of	ADP
ajlm-760	259	17	multidrug	multidrug	NOUN
ajlm-760	259	18	resistant	resistant	ADJ
ajlm-760	259	19	,	,	PUNCT
ajlm-760	259	20	h58	h58	NOUN
ajlm-760	259	21	-	-	PUNCT
ajlm-760	259	22	lineage	lineage	NOUN
ajlm-760	259	23	salmonella	salmonella	NOUN
ajlm-760	259	24	typhi	typhi	VERB
ajlm-760	259	25	in	in	ADP
ajlm-760	259	26	blantyre	blantyre	PROPN
ajlm-760	259	27	,	,	PUNCT
ajlm-760	259	28	malawi	malawi	PROPN
ajlm-760	259	29	.	.	PUNCT
ajlm-760	260	1	plos	plos	PROPN
ajlm-760	260	2	negl	negl	PROPN
ajlm-760	260	3	trop	trop	X
ajlm-760	260	4	dis	dis	PROPN
ajlm-760	260	5	.	.	PUNCT
ajlm-760	261	1	2015;9(4):e0003748	2015;9(4):e0003748	X
ajlm-760	261	2	.	.	PUNCT
ajlm-760	262	1	https://doi.org/10.1371/journal.pntd.0003748	https://doi.org/10.1371/journal.pntd.0003748	PROPN
ajlm-760	262	2	hendriksen	hendriksen	NOUN
ajlm-760	262	3	rs	rs	PROPN
ajlm-760	262	4	,	,	PUNCT
ajlm-760	262	5	leekitcharoenphon	leekitcharoenphon	VERB
ajlm-760	262	6	p	p	NOUN
ajlm-760	262	7	,	,	PUNCT
ajlm-760	262	8	lukjancenko	lukjancenko	PROPN
ajlm-760	262	9	o	o	NOUN
ajlm-760	262	10	,	,	PUNCT
ajlm-760	262	11	et	et	PROPN
ajlm-760	262	12	al	al	PROPN
ajlm-760	262	13	.	.	PUNCT
ajlm-760	263	1	genomic	genomic	ADJ
ajlm-760	263	2	signature	signature	NOUN
ajlm-760	263	3	of	of	ADP
ajlm-760	263	4	multidrug	multidrug	NOUN
ajlm-760	263	5	-	-	PUNCT
ajlm-760	263	6	resistant	resistant	ADJ
ajlm-760	263	7	salmonella	salmonella	NOUN
ajlm-760	263	8	enterica	enterica	PROPN
ajlm-760	263	9	serovar	serovar	PROPN
ajlm-760	263	10	typhi	typhi	NOUN
ajlm-760	263	11	isolates	isolate	NOUN
ajlm-760	263	12	related	relate	VERB
ajlm-760	263	13	to	to	ADP
ajlm-760	263	14	a	a	DET
ajlm-760	263	15	massive	massive	ADJ
ajlm-760	263	16	outbreak	outbreak	NOUN
ajlm-760	263	17	in	in	ADP
ajlm-760	263	18	zambia	zambia	PROPN
ajlm-760	263	19	between	between	ADP
ajlm-760	263	20	2010	2010	NUM
ajlm-760	263	21	and	and	CCONJ
ajlm-760	263	22	2012	2012	NUM
ajlm-760	263	23	.	.	PUNCT
ajlm-760	264	1	j	j	PROPN
ajlm-760	264	2	clin	clin	PROPN
ajlm-760	264	3	microbiol	microbiol	PROPN
ajlm-760	264	4	.	.	PUNCT
ajlm-760	265	1	2015;53(1):262–272	2015;53(1):262–272	X
ajlm-760	265	2	.	.	PUNCT
ajlm-760	266	1	https://doi.org/10.1128/jcm.02026-14	https://doi.org/10.1128/jcm.02026-14	PROPN
ajlm-760	266	2	wong	wong	PROPN
ajlm-760	266	3	vk	vk	PROPN
ajlm-760	266	4	,	,	PUNCT
ajlm-760	266	5	holt	holt	PROPN
ajlm-760	266	6	ke	ke	PROPN
ajlm-760	266	7	,	,	PUNCT
ajlm-760	266	8	okoro	okoro	ADP
ajlm-760	266	9	c	c	NOUN
ajlm-760	266	10	,	,	PUNCT
ajlm-760	266	11	et	et	PROPN
ajlm-760	266	12	al	al	PROPN
ajlm-760	266	13	.	.	PUNCT
ajlm-760	267	1	molecular	molecular	ADJ
ajlm-760	267	2	surveillance	surveillance	NOUN
ajlm-760	267	3	identifies	identify	VERB
ajlm-760	267	4	multiple	multiple	ADJ
ajlm-760	267	5	transmissions	transmission	NOUN
ajlm-760	267	6	of	of	ADP
ajlm-760	267	7	typhoid	typhoid	NOUN
ajlm-760	267	8	in	in	ADP
ajlm-760	267	9	west	west	PROPN
ajlm-760	267	10	africa	africa	PROPN
ajlm-760	267	11	.	.	PUNCT
ajlm-760	268	1	plos	plos	PROPN
ajlm-760	268	2	negl	negl	PROPN
ajlm-760	268	3	trop	trop	X
ajlm-760	268	4	dis	dis	PROPN
ajlm-760	268	5	.	.	PUNCT
ajlm-760	269	1	2016;10(9):e0004781	2016;10(9):e0004781	X
ajlm-760	269	2	.	.	PUNCT
ajlm-760	269	3	https://doi.org/10.1371/journal.pntd.0004781	https://doi.org/10.1371/journal.pntd.0004781	PROPN
ajlm-760	269	4	dalsgaard	dalsgaard	PROPN
ajlm-760	269	5	a	a	PROPN
ajlm-760	269	6	,	,	PUNCT
ajlm-760	269	7	mortensen	mortensen	PROPN
ajlm-760	269	8	hf	hf	PROPN
ajlm-760	269	9	,	,	PUNCT
ajlm-760	269	10	molbak	molbak	PROPN
ajlm-760	269	11	k	k	PROPN
ajlm-760	269	12	,	,	PUNCT
ajlm-760	269	13	dias	dias	PROPN
ajlm-760	269	14	f	f	PROPN
ajlm-760	269	15	,	,	PUNCT
ajlm-760	269	16	serichantalergs	serichantalergs	PROPN
ajlm-760	269	17	o	o	NOUN
ajlm-760	269	18	,	,	PUNCT
ajlm-760	269	19	echeverria	echeverria	PROPN
ajlm-760	269	20	p.	p.	NOUN
ajlm-760	269	21	molecular	molecular	ADJ
ajlm-760	269	22	characterization	characterization	NOUN
ajlm-760	269	23	of	of	ADP
ajlm-760	269	24	vibrio	vibrio	ADJ
ajlm-760	269	25	cholerae	cholerae	PROPN
ajlm-760	269	26	o1	o1	PROPN
ajlm-760	269	27	strains	strain	NOUN
ajlm-760	269	28	isolated	isolate	VERB
ajlm-760	269	29	during	during	ADP
ajlm-760	269	30	cholera	cholera	NOUN
ajlm-760	269	31	outbreaks	outbreak	NOUN
ajlm-760	269	32	in	in	ADP
ajlm-760	269	33	guinea	guinea	NOUN
ajlm-760	269	34	-	-	PUNCT
ajlm-760	269	35	bissau	bissau	NOUN
ajlm-760	269	36	.	.	PUNCT
ajlm-760	270	1	j	j	PROPN
ajlm-760	270	2	clin	clin	PROPN
ajlm-760	270	3	microbiol	microbiol	PROPN
ajlm-760	270	4	.	.	PUNCT
ajlm-760	271	1	1996;34(5):1189–1192	1996;34(5):1189–1192	X
ajlm-760	271	2	.	.	PUNCT
ajlm-760	272	1	colombo	colombo	PROPN
ajlm-760	272	2	mm	mm	PROPN
ajlm-760	272	3	,	,	PUNCT
ajlm-760	272	4	mastrandrea	mastrandrea	PROPN
ajlm-760	272	5	s	s	PROPN
ajlm-760	272	6	,	,	PUNCT
ajlm-760	272	7	leite	leite	PROPN
ajlm-760	272	8	f	f	PROPN
ajlm-760	272	9	,	,	PUNCT
ajlm-760	272	10	et	et	PROPN
ajlm-760	272	11	al	al	PROPN
ajlm-760	272	12	.	.	PUNCT
ajlm-760	273	1	tracking	tracking	NOUN
ajlm-760	273	2	of	of	ADP
ajlm-760	273	3	clinical	clinical	ADJ
ajlm-760	273	4	and	and	CCONJ
ajlm-760	273	5	environmental	environmental	ADJ
ajlm-760	273	6	vibrio	vibrio	ADJ
ajlm-760	273	7	cholerae	cholerae	PROPN
ajlm-760	273	8	o1	o1	PROPN
ajlm-760	273	9	strains	strain	NOUN
ajlm-760	273	10	by	by	ADP
ajlm-760	273	11	combined	combined	ADJ
ajlm-760	273	12	analysis	analysis	NOUN
ajlm-760	273	13	of	of	ADP
ajlm-760	273	14	the	the	DET
ajlm-760	273	15	presence	presence	NOUN
ajlm-760	273	16	of	of	ADP
ajlm-760	273	17	toxin	toxin	NOUN
ajlm-760	273	18	cassette	cassette	NOUN
ajlm-760	273	19	,	,	PUNCT
ajlm-760	273	20	plasmid	plasmid	NOUN
ajlm-760	273	21	content	content	NOUN
ajlm-760	273	22	and	and	CCONJ
ajlm-760	273	23	eric	eric	PROPN
ajlm-760	273	24	pcr	pcr	PROPN
ajlm-760	273	25	.	.	PUNCT
ajlm-760	274	1	fems	fems	PROPN
ajlm-760	274	2	immunol	immunol	PROPN
ajlm-760	274	3	med	med	PROPN
ajlm-760	274	4	microbiol	microbiol	NOUN
ajlm-760	274	5	.	.	PUNCT
ajlm-760	275	1	1997;19(1):33–45	1997;19(1):33–45	X
ajlm-760	275	2	.	.	PUNCT
ajlm-760	275	3	https://doi.org/10.1111/j.1574-695x.1997.tb01070.x	https://doi.org/10.1111/j.1574-695x.1997.tb01070.x	PROPN
ajlm-760	276	1	aidara	aidara	PROPN
ajlm-760	276	2	a	a	ADP
ajlm-760	276	3	,	,	PUNCT
ajlm-760	276	4	koblavi	koblavi	NOUN
ajlm-760	276	5	s	s	PART
ajlm-760	276	6	,	,	PUNCT
ajlm-760	276	7	boye	boye	PROPN
ajlm-760	276	8	cs	cs	PROPN
ajlm-760	276	9	,	,	PUNCT
ajlm-760	276	10	et	et	PROPN
ajlm-760	276	11	al	al	PROPN
ajlm-760	276	12	.	.	PROPN
ajlm-760	277	1	phenotypic	phenotypic	ADJ
ajlm-760	277	2	and	and	CCONJ
ajlm-760	277	3	genotypic	genotypic	ADJ
ajlm-760	277	4	characterization	characterization	NOUN
ajlm-760	277	5	of	of	ADP
ajlm-760	277	6	vibrio	vibrio	ADJ
ajlm-760	277	7	cholerae	cholerae	NOUN
ajlm-760	277	8	isolates	isolate	NOUN
ajlm-760	277	9	from	from	ADP
ajlm-760	277	10	a	a	DET
ajlm-760	277	11	recent	recent	ADJ
ajlm-760	277	12	cholera	cholera	NOUN
ajlm-760	277	13	outbreak	outbreak	NOUN
ajlm-760	277	14	in	in	ADP
ajlm-760	277	15	senegal	senegal	PROPN
ajlm-760	277	16	:	:	PUNCT
ajlm-760	277	17	comparison	comparison	NOUN
ajlm-760	277	18	with	with	ADP
ajlm-760	277	19	isolates	isolate	NOUN
ajlm-760	277	20	from	from	ADP
ajlm-760	277	21	guinea	guinea	NOUN
ajlm-760	277	22	-	-	PUNCT
ajlm-760	277	23	bissau	bissau	NOUN
ajlm-760	277	24	.	.	PUNCT
ajlm-760	278	1	am	be	AUX
ajlm-760	278	2	j	j	PROPN
ajlm-760	278	3	trop	trop	X
ajlm-760	278	4	med	med	PROPN
ajlm-760	278	5	hyg	hyg	PROPN
ajlm-760	278	6	.	.	PUNCT
ajlm-760	279	1	1998;58(2):163–167	1998;58(2):163–167	NUM
ajlm-760	279	2	.	.	PUNCT
ajlm-760	279	3	https://doi.org/10.4269/ajtmh.1998.58.163	https://doi.org/10.4269/ajtmh.1998.58.163	PROPN
ajlm-760	279	4	dalsgaard	dalsgaard	PROPN
ajlm-760	280	1	a	a	PRON
ajlm-760	280	2	,	,	PUNCT
ajlm-760	280	3	forslund	forslund	NOUN
ajlm-760	280	4	a	a	PRON
ajlm-760	280	5	,	,	PUNCT
ajlm-760	280	6	sandvang	sandvang	PROPN
ajlm-760	281	1	d	d	NOUN
ajlm-760	281	2	,	,	PUNCT
ajlm-760	281	3	arntzen	arntzen	ADJ
ajlm-760	281	4	l	l	NOUN
ajlm-760	281	5	,	,	PUNCT
ajlm-760	281	6	keddy	keddy	PROPN
ajlm-760	281	7	k.	k.	PROPN
ajlm-760	281	8	vibrio	vibrio	PROPN
ajlm-760	281	9	cholerae	cholerae	PROPN
ajlm-760	281	10	o1	o1	PROPN
ajlm-760	281	11	outbreak	outbreak	NOUN
ajlm-760	281	12	isolates	isolate	NOUN
ajlm-760	281	13	in	in	ADP
ajlm-760	281	14	mozambique	mozambique	PROPN
ajlm-760	281	15	and	and	CCONJ
ajlm-760	281	16	south	south	PROPN
ajlm-760	281	17	africa	africa	PROPN
ajlm-760	281	18	in	in	ADP
ajlm-760	281	19	1998	1998	NUM
ajlm-760	281	20	are	be	AUX
ajlm-760	281	21	multiple	multiple	ADJ
ajlm-760	281	22	-	-	PUNCT
ajlm-760	281	23	drug	drug	NOUN
ajlm-760	281	24	resistant	resistant	ADJ
ajlm-760	281	25	,	,	PUNCT
ajlm-760	281	26	contain	contain	VERB
ajlm-760	281	27	the	the	DET
ajlm-760	281	28	sxt	sxt	PROPN
ajlm-760	281	29	element	element	NOUN
ajlm-760	281	30	and	and	CCONJ
ajlm-760	281	31	the	the	DET
ajlm-760	281	32	aada2	aada2	NOUN
ajlm-760	281	33	gene	gene	NOUN
ajlm-760	281	34	located	locate	VERB
ajlm-760	281	35	on	on	ADP
ajlm-760	281	36	class	class	NOUN
ajlm-760	281	37	1	1	NUM
ajlm-760	281	38	integrons	integron	NOUN
ajlm-760	281	39	.	.	PUNCT
ajlm-760	282	1	j	j	PROPN
ajlm-760	282	2	antimicrob	antimicrob	PROPN
ajlm-760	282	3	chemother	chemother	PROPN
ajlm-760	282	4	.	.	PUNCT
ajlm-760	283	1	2001;48(6):827–838	2001;48(6):827–838	X
ajlm-760	283	2	.	.	PUNCT
ajlm-760	284	1	https://doi.org/10.1093/jac/48.6.827	https://doi.org/10.1093/jac/48.6.827	PRON
ajlm-760	284	2	folgosa	folgosa	PROPN
ajlm-760	284	3	e	e	PROPN
ajlm-760	284	4	,	,	PUNCT
ajlm-760	284	5	mastrandrea	mastrandrea	PROPN
ajlm-760	284	6	s	s	PROPN
ajlm-760	284	7	,	,	PUNCT
ajlm-760	284	8	cappuccinelli	cappuccinelli	PROPN
ajlm-760	284	9	p	p	NOUN
ajlm-760	284	10	,	,	PUNCT
ajlm-760	284	11	et	et	PROPN
ajlm-760	284	12	al	al	PROPN
ajlm-760	284	13	.	.	PROPN
ajlm-760	285	1	molecular	molecular	ADJ
ajlm-760	285	2	identification	identification	NOUN
ajlm-760	285	3	of	of	ADP
ajlm-760	285	4	pathogenicity	pathogenicity	NOUN
ajlm-760	285	5	genes	gene	NOUN
ajlm-760	285	6	and	and	CCONJ
ajlm-760	285	7	eric	eric	PROPN
ajlm-760	285	8	types	type	NOUN
ajlm-760	285	9	in	in	ADP
ajlm-760	285	10	vibrio	vibrio	ADJ
ajlm-760	285	11	cholerae	cholerae	PROPN
ajlm-760	285	12	o1	o1	PROPN
ajlm-760	285	13	epidemic	epidemic	NOUN
ajlm-760	285	14	strains	strain	VERB
ajlm-760	285	15	from	from	ADP
ajlm-760	285	16	mozambique	mozambique	PROPN
ajlm-760	285	17	.	.	PUNCT
ajlm-760	286	1	epidemiol	epidemiol	PROPN
ajlm-760	286	2	infect	infect	PROPN
ajlm-760	286	3	.	.	PUNCT
ajlm-760	287	1	2001;127(1):17–25	2001;127(1):17–25	X
ajlm-760	287	2	.	.	PUNCT
ajlm-760	288	1	https://doi.org/10.1017/s0950268801005623	https://doi.org/10.1017/s0950268801005623	NUM
ajlm-760	288	2	ismail	ismail	PROPN
ajlm-760	288	3	h	h	PROPN
ajlm-760	288	4	,	,	PUNCT
ajlm-760	288	5	smith	smith	PROPN
ajlm-760	288	6	am	am	PROPN
ajlm-760	288	7	,	,	PUNCT
ajlm-760	288	8	sooka	sooka	VERB
ajlm-760	288	9	a	a	PRON
ajlm-760	288	10	,	,	PUNCT
ajlm-760	288	11	keddy	keddy	PROPN
ajlm-760	288	12	kh	kh	PROPN
ajlm-760	288	13	.	.	PUNCT
ajlm-760	289	1	genetic	genetic	ADJ
ajlm-760	289	2	characterization	characterization	NOUN
ajlm-760	289	3	of	of	ADP
ajlm-760	289	4	multidrug	multidrug	NOUN
ajlm-760	289	5	-	-	PUNCT
ajlm-760	289	6	resistant	resistant	ADJ
ajlm-760	289	7	,	,	PUNCT
ajlm-760	289	8	extended	extend	VERB
ajlm-760	289	9	-	-	PUNCT
ajlm-760	289	10	spectrumbeta	spectrumbeta	NOUN
ajlm-760	289	11	-	-	PUNCT
ajlm-760	289	12	lactamase	lactamase	NOUN
ajlm-760	289	13	-	-	PUNCT
ajlm-760	289	14	producing	produce	VERB
ajlm-760	289	15	vibrio	vibrio	ADJ
ajlm-760	289	16	cholerae	cholerae	PROPN
ajlm-760	289	17	o1	o1	PROPN
ajlm-760	289	18	outbreak	outbreak	NOUN
ajlm-760	289	19	strains	strain	VERB
ajlm-760	289	20	,	,	PUNCT
ajlm-760	289	21	mpumalanga	mpumalanga	PROPN
ajlm-760	289	22	,	,	PUNCT
ajlm-760	289	23	south	south	PROPN
ajlm-760	289	24	africa	africa	PROPN
ajlm-760	289	25	,	,	PUNCT
ajlm-760	289	26	2008	2008	NUM
ajlm-760	289	27	.	.	PUNCT
ajlm-760	290	1	j	j	PROPN
ajlm-760	290	2	clin	clin	PROPN
ajlm-760	290	3	microbiol	microbiol	PROPN
ajlm-760	290	4	.	.	PUNCT
ajlm-760	291	1	2011;49(8):2976–2979	2011;49(8):2976–2979	NUM
ajlm-760	291	2	.	.	PUNCT
ajlm-760	292	1	https://doi.org/10.1128/jcm.00293-11	https://doi.org/10.1128/jcm.00293-11	PROPN
ajlm-760	292	2	pugliese	pugliese	NOUN
ajlm-760	292	3	n	n	CCONJ
ajlm-760	292	4	,	,	PUNCT
ajlm-760	292	5	maimone	maimone	NOUN
ajlm-760	292	6	f	f	NOUN
ajlm-760	292	7	,	,	PUNCT
ajlm-760	292	8	scrascia	scrascia	NOUN
ajlm-760	292	9	m	m	PROPN
ajlm-760	292	10	,	,	PUNCT
ajlm-760	292	11	materu	materu	PROPN
ajlm-760	292	12	sf	sf	PROPN
ajlm-760	292	13	,	,	PUNCT
ajlm-760	292	14	pazzani	pazzani	PROPN
ajlm-760	292	15	c.	c.	PROPN
ajlm-760	292	16	sxt	sxt	PROPN
ajlm-760	292	17	-	-	PUNCT
ajlm-760	292	18	related	relate	VERB
ajlm-760	292	19	integrating	integrate	VERB
ajlm-760	292	20	conjugative	conjugative	ADJ
ajlm-760	292	21	element	element	NOUN
ajlm-760	292	22	and	and	CCONJ
ajlm-760	292	23	incc	incc	NOUN
ajlm-760	292	24	plasmids	plasmid	NOUN
ajlm-760	292	25	in	in	ADP
ajlm-760	292	26	vibrio	vibrio	ADJ
ajlm-760	292	27	cholerae	cholerae	PROPN
ajlm-760	292	28	o1	o1	PROPN
ajlm-760	292	29	strains	strain	NOUN
ajlm-760	292	30	in	in	ADP
ajlm-760	292	31	eastern	eastern	PROPN
ajlm-760	292	32	africa	africa	PROPN
ajlm-760	292	33	.	.	PUNCT
ajlm-760	293	1	j	j	PROPN
ajlm-760	293	2	antimicrob	antimicrob	PROPN
ajlm-760	293	3	chemother	chemother	PROPN
ajlm-760	293	4	.	.	PUNCT
ajlm-760	294	1	2009;63(3):438–442	2009;63(3):438–442	NUM
ajlm-760	294	2	.	.	X
ajlm-760	295	1	https://doi.org/10.1093/jac/dkn542	https://doi.org/10.1093/jac/dkn542	PROPN
ajlm-760	295	2	opintan	opintan	PROPN
ajlm-760	295	3	ja	ja	PROPN
ajlm-760	295	4	,	,	PUNCT
ajlm-760	295	5	newman	newman	PROPN
ajlm-760	295	6	mj	mj	PROPN
ajlm-760	295	7	,	,	PUNCT
ajlm-760	295	8	nsiah	nsiah	PROPN
ajlm-760	295	9	-	-	PUNCT
ajlm-760	295	10	poodoh	poodoh	NOUN
ajlm-760	295	11	oa	oa	NOUN
ajlm-760	295	12	,	,	PUNCT
ajlm-760	295	13	okeke	okeke	VERB
ajlm-760	295	14	in	in	ADP
ajlm-760	295	15	.	.	PUNCT
ajlm-760	296	1	vibrio	vibrio	PROPN
ajlm-760	296	2	cholerae	cholerae	PROPN
ajlm-760	296	3	o1	o1	PROPN
ajlm-760	296	4	from	from	ADP
ajlm-760	296	5	accra	accra	NOUN
ajlm-760	296	6	,	,	PUNCT
ajlm-760	296	7	ghana	ghana	PROPN
ajlm-760	296	8	carrying	carry	VERB
ajlm-760	296	9	a	a	DET
ajlm-760	296	10	class	class	NOUN
ajlm-760	296	11	2	2	NUM
ajlm-760	296	12	integron	integron	NOUN
ajlm-760	296	13	and	and	CCONJ
ajlm-760	296	14	the	the	DET
ajlm-760	296	15	sxt	sxt	PROPN
ajlm-760	296	16	element	element	NOUN
ajlm-760	296	17	.	.	PUNCT
ajlm-760	297	1	j	j	PROPN
ajlm-760	297	2	antimicrob	antimicrob	PROPN
ajlm-760	297	3	chemother	chemother	PROPN
ajlm-760	297	4	.	.	PUNCT
ajlm-760	298	1	2008;62(5):929–933	2008;62(5):929–933	NOUN
ajlm-760	298	2	.	.	PUNCT
ajlm-760	299	1	https://doi.org/10.1093/jac/dkn334	https://doi.org/10.1093/jac/dkn334	PROPN
ajlm-760	299	2	kiiru	kiiru	PROPN
ajlm-760	299	3	jn	jn	PROPN
ajlm-760	299	4	,	,	PUNCT
ajlm-760	299	5	saidi	saidi	PROPN
ajlm-760	299	6	sm	sm	PROPN
ajlm-760	299	7	,	,	PUNCT
ajlm-760	299	8	goddeeris	goddeeris	PROPN
ajlm-760	299	9	bm	bm	PROPN
ajlm-760	299	10	,	,	PUNCT
ajlm-760	299	11	wamae	wamae	PROPN
ajlm-760	299	12	nc	nc	PROPN
ajlm-760	299	13	,	,	PUNCT
ajlm-760	299	14	butaye	butaye	VERB
ajlm-760	299	15	p	p	NOUN
ajlm-760	299	16	,	,	PUNCT
ajlm-760	299	17	kariuki	kariuki	PROPN
ajlm-760	299	18	sm	sm	PROPN
ajlm-760	299	19	.	.	PROPN
ajlm-760	300	1	molecular	molecular	ADJ
ajlm-760	300	2	characterisation	characterisation	NOUN
ajlm-760	300	3	of	of	ADP
ajlm-760	300	4	vibrio	vibrio	ADJ
ajlm-760	300	5	cholerae	cholerae	PROPN
ajlm-760	300	6	o1	o1	PROPN
ajlm-760	300	7	strains	strain	NOUN
ajlm-760	300	8	carrying	carry	VERB
ajlm-760	300	9	an	an	DET
ajlm-760	300	10	sxt	sxt	NOUN
ajlm-760	300	11	/	/	SYM
ajlm-760	300	12	r391	r391	PROPN
ajlm-760	300	13	-	-	PUNCT
ajlm-760	300	14	like	like	ADJ
ajlm-760	300	15	element	element	NOUN
ajlm-760	300	16	from	from	ADP
ajlm-760	300	17	cholera	cholera	NOUN
ajlm-760	300	18	outbreaks	outbreak	NOUN
ajlm-760	300	19	in	in	ADP
ajlm-760	300	20	kenya	kenya	PROPN
ajlm-760	300	21	:	:	PUNCT
ajlm-760	301	1	1994–2007	1994–2007	NUM
ajlm-760	301	2	.	.	PUNCT
ajlm-760	302	1	bmc	bmc	PROPN
ajlm-760	302	2	microbiol	microbiol	PROPN
ajlm-760	302	3	.	.	PUNCT
ajlm-760	303	1	2009;9:275	2009;9:275	NUM
ajlm-760	303	2	.	.	PUNCT
ajlm-760	304	1	https://doi.org/10.1186/1471-2180-9-275	https://doi.org/10.1186/1471-2180-9-275	PROPN
ajlm-760	304	2	.	.	PUNCT
ajlm-760	304	3	scrascia	scrascia	PROPN
ajlm-760	304	4	m	m	PROPN
ajlm-760	304	5	,	,	PUNCT
ajlm-760	304	6	maimone	maimone	NOUN
ajlm-760	304	7	f	f	NOUN
ajlm-760	304	8	,	,	PUNCT
ajlm-760	304	9	mohamud	mohamud	PROPN
ajlm-760	304	10	ka	ka	PROPN
ajlm-760	304	11	,	,	PUNCT
ajlm-760	304	12	et	et	PROPN
ajlm-760	304	13	al	al	PROPN
ajlm-760	304	14	.	.	PROPN
ajlm-760	304	15	clonal	clonal	PROPN
ajlm-760	304	16	relationship	relationship	NOUN
ajlm-760	304	17	among	among	ADP
ajlm-760	304	18	vibrio	vibrio	ADJ
ajlm-760	304	19	cholerae	cholerae	PROPN
ajlm-760	304	20	o1	o1	PROPN
ajlm-760	304	21	el	el	PROPN
ajlm-760	304	22	tor	tor	PROPN
ajlm-760	304	23	strains	strain	NOUN
ajlm-760	304	24	causing	cause	VERB
ajlm-760	304	25	the	the	DET
ajlm-760	304	26	largest	large	ADJ
ajlm-760	304	27	cholera	cholera	NOUN
ajlm-760	304	28	epidemic	epidemic	NOUN
ajlm-760	304	29	in	in	ADP
ajlm-760	304	30	kenya	kenya	PROPN
ajlm-760	304	31	in	in	ADP
ajlm-760	304	32	the	the	DET
ajlm-760	304	33	late	late	ADJ
ajlm-760	304	34	1990s	1990	NOUN
ajlm-760	304	35	.	.	PUNCT
ajlm-760	305	1	j	j	PROPN
ajlm-760	305	2	clin	clin	PROPN
ajlm-760	305	3	microbiol	microbiol	PROPN
ajlm-760	305	4	.	.	PUNCT
ajlm-760	306	1	2006;44(9):3401–3404	2006;44(9):3401–3404	NOUN
ajlm-760	306	2	.	.	PUNCT
ajlm-760	307	1	https://doi.org/10.1128/jcm.00611-06	https://doi.org/10.1128/jcm.00611-06	PROPN
ajlm-760	307	2	ngandjio	ngandjio	ADJ
ajlm-760	307	3	a	a	DET
ajlm-760	307	4	,	,	PUNCT
ajlm-760	307	5	tejiokem	tejiokem	PROPN
ajlm-760	307	6	m	m	PROPN
ajlm-760	307	7	,	,	PUNCT
ajlm-760	307	8	wouafo	wouafo	PROPN
ajlm-760	307	9	m	m	PROPN
ajlm-760	307	10	,	,	PUNCT
ajlm-760	307	11	et	et	PROPN
ajlm-760	307	12	al	al	PROPN
ajlm-760	307	13	.	.	PROPN
ajlm-760	307	14	antimicrobial	antimicrobial	ADJ
ajlm-760	307	15	resistance	resistance	NOUN
ajlm-760	307	16	and	and	CCONJ
ajlm-760	307	17	molecular	molecular	ADJ
ajlm-760	307	18	characterization	characterization	NOUN
ajlm-760	307	19	of	of	ADP
ajlm-760	307	20	vibrio	vibrio	ADJ
ajlm-760	307	21	cholerae	cholerae	PROPN
ajlm-760	307	22	o1	o1	PROPN
ajlm-760	307	23	during	during	ADP
ajlm-760	307	24	the	the	DET
ajlm-760	307	25	2004	2004	NUM
ajlm-760	307	26	and	and	CCONJ
ajlm-760	307	27	2005	2005	NUM
ajlm-760	307	28	outbreak	outbreak	NOUN
ajlm-760	307	29	of	of	ADP
ajlm-760	307	30	cholera	cholera	NOUN
ajlm-760	307	31	in	in	ADP
ajlm-760	307	32	cameroon	cameroon	PROPN
ajlm-760	307	33	.	.	PUNCT
ajlm-760	308	1	foodborne	foodborne	PROPN
ajlm-760	308	2	pathog	pathog	PROPN
ajlm-760	308	3	dis	dis	PROPN
ajlm-760	308	4	.	.	PUNCT
ajlm-760	309	1	2009;6(1):49–56	2009;6(1):49–56	NUM
ajlm-760	309	2	.	.	PUNCT
ajlm-760	310	1	https://doi.org/10.1089/fpd.2008.0127	https://doi.org/10.1089/fpd.2008.0127	NOUN
ajlm-760	310	2	scrascia	scrascia	PROPN
ajlm-760	310	3	m	m	PROPN
ajlm-760	310	4	,	,	PUNCT
ajlm-760	310	5	pugliese	pugliese	VERB
ajlm-760	310	6	n	n	CCONJ
ajlm-760	310	7	,	,	PUNCT
ajlm-760	310	8	maimone	maimone	NOUN
ajlm-760	310	9	f	f	NOUN
ajlm-760	310	10	,	,	PUNCT
ajlm-760	310	11	et	et	PROPN
ajlm-760	310	12	al	al	PROPN
ajlm-760	310	13	.	.	PROPN
ajlm-760	310	14	clonal	clonal	PROPN
ajlm-760	310	15	relationship	relationship	NOUN
ajlm-760	310	16	among	among	ADP
ajlm-760	310	17	vibrio	vibrio	ADJ
ajlm-760	310	18	cholerae	cholerae	PROPN
ajlm-760	310	19	o1	o1	PROPN
ajlm-760	310	20	el	el	PROPN
ajlm-760	310	21	tor	tor	PROPN
ajlm-760	310	22	strains	strain	NOUN
ajlm-760	310	23	isolated	isolate	VERB
ajlm-760	310	24	in	in	ADP
ajlm-760	310	25	somalia	somalia	PROPN
ajlm-760	310	26	.	.	PUNCT
ajlm-760	311	1	int	int	PROPN
ajlm-760	311	2	j	j	PROPN
ajlm-760	311	3	med	med	PROPN
ajlm-760	311	4	microbiol	microbiol	PROPN
ajlm-760	311	5	.	.	PUNCT
ajlm-760	312	1	2009;299(3):203–207	2009;299(3):203–207	NUM
ajlm-760	312	2	.	.	PUNCT
ajlm-760	313	1	https://doi.org/10.1016/j.ijmm.2008.07.003	https://doi.org/10.1016/j.ijmm.2008.07.003	NUM
ajlm-760	313	2	scrascia	scrascia	NOUN
ajlm-760	313	3	m	m	NOUN
ajlm-760	313	4	,	,	PUNCT
ajlm-760	313	5	pugliese	pugliese	ADJ
ajlm-760	313	6	n	n	CCONJ
ajlm-760	313	7	,	,	PUNCT
ajlm-760	313	8	maimone	maimone	NOUN
ajlm-760	313	9	f	f	NOUN
ajlm-760	313	10	,	,	PUNCT
ajlm-760	314	1	et	et	PROPN
ajlm-760	314	2	al	al	PROPN
ajlm-760	314	3	.	.	PROPN
ajlm-760	314	4	cholera	cholera	PROPN
ajlm-760	314	5	in	in	ADP
ajlm-760	314	6	ethiopia	ethiopia	PROPN
ajlm-760	314	7	in	in	ADP
ajlm-760	314	8	the	the	DET
ajlm-760	314	9	1990s	1990s	NUM
ajlm-760	314	10	:	:	PUNCT
ajlm-760	314	11	epidemiologic	epidemiologic	ADJ
ajlm-760	314	12	patterns	pattern	NOUN
ajlm-760	314	13	,	,	PUNCT
ajlm-760	314	14	clonal	clonal	ADJ
ajlm-760	314	15	analysis	analysis	NOUN
ajlm-760	314	16	,	,	PUNCT
ajlm-760	314	17	and	and	CCONJ
ajlm-760	314	18	antimicrobial	antimicrobial	ADJ
ajlm-760	314	19	resistance	resistance	NOUN
ajlm-760	314	20	.	.	PUNCT
ajlm-760	315	1	int	int	PROPN
ajlm-760	315	2	j	j	PROPN
ajlm-760	315	3	med	med	PROPN
ajlm-760	315	4	microbiol	microbiol	PROPN
ajlm-760	315	5	.	.	PUNCT
ajlm-760	316	1	2009;299(5):367–372	2009;299(5):367–372	NUM
ajlm-760	316	2	.	.	X
ajlm-760	316	3	https://doi.org/10.1016/j.ijmm.2008.10.004	https://doi.org/10.1016/j.ijmm.2008.10.004	PROPN
ajlm-760	316	4	keddy	keddy	PROPN
ajlm-760	316	5	kh	kh	PROPN
ajlm-760	316	6	,	,	PUNCT
ajlm-760	316	7	nadan	nadan	PROPN
ajlm-760	316	8	s	s	PROPN
ajlm-760	316	9	,	,	PUNCT
ajlm-760	316	10	govind	govind	PROPN
ajlm-760	316	11	c	c	PROPN
ajlm-760	316	12	,	,	PUNCT
ajlm-760	316	13	sturm	sturm	PROPN
ajlm-760	316	14	aw	aw	INTJ
ajlm-760	316	15	.	.	PROPN
ajlm-760	316	16	evidence	evidence	NOUN
ajlm-760	316	17	for	for	ADP
ajlm-760	316	18	a	a	DET
ajlm-760	316	19	clonally	clonally	ADV
ajlm-760	316	20	different	different	ADJ
ajlm-760	316	21	origin	origin	NOUN
ajlm-760	316	22	of	of	ADP
ajlm-760	316	23	the	the	DET
ajlm-760	316	24	two	two	NUM
ajlm-760	316	25	cholera	cholera	NOUN
ajlm-760	316	26	epidemics	epidemic	NOUN
ajlm-760	316	27	of	of	ADP
ajlm-760	316	28	2001	2001	NUM
ajlm-760	316	29	2002	2002	NUM
ajlm-760	316	30	and	and	CCONJ
ajlm-760	316	31	1980	1980	NUM
ajlm-760	316	32	1987	1987	NUM
ajlm-760	316	33	in	in	ADP
ajlm-760	316	34	south	south	PROPN
ajlm-760	316	35	africa	africa	PROPN
ajlm-760	316	36	.	.	PUNCT
ajlm-760	317	1	j	j	PROPN
ajlm-760	317	2	med	med	PROPN
ajlm-760	317	3	microbiol	microbiol	PROPN
ajlm-760	317	4	.	.	PUNCT
ajlm-760	318	1	2007;56(pt	2007;56(pt	PROPN
ajlm-760	318	2	12):1644–1650	12):1644–1650	PROPN
ajlm-760	318	3	.	.	PUNCT
ajlm-760	319	1	https://doi.org/10.1099/jmm.0.47230-0	https://doi.org/10.1099/jmm.0.47230-0	PROPN
ajlm-760	319	2	smith	smith	PROPN
ajlm-760	319	3	am	be	AUX
ajlm-760	319	4	,	,	PUNCT
ajlm-760	319	5	keddy	keddy	PROPN
ajlm-760	319	6	kh	kh	PROPN
ajlm-760	319	7	,	,	PUNCT
ajlm-760	319	8	de	de	PROPN
ajlm-760	319	9	wee	wee	PROPN
ajlm-760	319	10	l.	l.	PROPN
ajlm-760	319	11	characterization	characterization	NOUN
ajlm-760	319	12	of	of	ADP
ajlm-760	319	13	cholera	cholera	NOUN
ajlm-760	319	14	outbreak	outbreak	NOUN
ajlm-760	319	15	isolates	isolate	NOUN
ajlm-760	319	16	from	from	ADP
ajlm-760	319	17	namibia	namibia	PROPN
ajlm-760	319	18	,	,	PUNCT
ajlm-760	319	19	december	december	PROPN
ajlm-760	319	20	2006	2006	NUM
ajlm-760	319	21	to	to	ADP
ajlm-760	319	22	february	february	PROPN
ajlm-760	319	23	2007	2007	NUM
ajlm-760	319	24	.	.	PUNCT
ajlm-760	320	1	epidemiol	epidemiol	PROPN
ajlm-760	320	2	infect	infect	PROPN
ajlm-760	320	3	.	.	PUNCT
ajlm-760	321	1	2008;136(9):1207–1209	2008;136(9):1207–1209	NOUN
ajlm-760	321	2	.	.	PUNCT
ajlm-760	322	1	https://doi.org/10.1017/s0950268807009685	https://doi.org/10.1017/s0950268807009685	NUM
ajlm-760	322	2	ismail	ismail	PROPN
ajlm-760	322	3	h	h	NOUN
ajlm-760	322	4	,	,	PUNCT
ajlm-760	322	5	smith	smith	PROPN
ajlm-760	322	6	am	am	PROPN
ajlm-760	322	7	,	,	PUNCT
ajlm-760	322	8	tau	tau	PROPN
ajlm-760	322	9	np	np	INTJ
ajlm-760	322	10	,	,	PUNCT
ajlm-760	322	11	sooka	sooka	VERB
ajlm-760	322	12	a	a	PRON
ajlm-760	322	13	,	,	PUNCT
ajlm-760	322	14	keddy	keddy	PROPN
ajlm-760	322	15	kh	kh	PROPN
ajlm-760	322	16	.	.	PROPN
ajlm-760	323	1	cholera	cholera	PROPN
ajlm-760	323	2	outbreak	outbreak	NOUN
ajlm-760	323	3	in	in	ADP
ajlm-760	323	4	south	south	PROPN
ajlm-760	323	5	africa	africa	PROPN
ajlm-760	323	6	,	,	PUNCT
ajlm-760	323	7	2008	2008	NUM
ajlm-760	323	8	-	-	SYM
ajlm-760	323	9	2009	2009	NUM
ajlm-760	323	10	:	:	PUNCT
ajlm-760	323	11	laboratory	laboratory	NOUN
ajlm-760	323	12	analysis	analysis	NOUN
ajlm-760	323	13	of	of	ADP
ajlm-760	323	14	vibrio	vibrio	ADJ
ajlm-760	323	15	cholerae	cholerae	PROPN
ajlm-760	323	16	o1	o1	PROPN
ajlm-760	323	17	strains	strain	VERB
ajlm-760	323	18	.	.	PUNCT
ajlm-760	324	1	j	j	PROPN
ajlm-760	324	2	infect	infect	VERB
ajlm-760	324	3	dis	dis	PROPN
ajlm-760	324	4	.	.	PUNCT
ajlm-760	325	1	2013;208	2013;208	NUM
ajlm-760	325	2	(	(	PUNCT
ajlm-760	325	3	suppl	suppl	PROPN
ajlm-760	325	4	1):39–45	1):39–45	NUM
ajlm-760	325	5	.	.	PUNCT
ajlm-760	326	1	https://doi.org/10.1093/infdis/jit200	https://doi.org/10.1093/infdis/jit200	NOUN
ajlm-760	326	2	butler	butler	PROPN
ajlm-760	326	3	d.	d.	PROPN
ajlm-760	326	4	cholera	cholera	PROPN
ajlm-760	326	5	tightens	tighten	VERB
ajlm-760	326	6	grip	grip	NOUN
ajlm-760	326	7	on	on	ADP
ajlm-760	326	8	haiti	haiti	PROPN
ajlm-760	326	9	.	.	PUNCT
ajlm-760	327	1	nature	nature	NOUN
ajlm-760	327	2	.	.	PUNCT
ajlm-760	328	1	2010;468(7323):483–484	2010;468(7323):483–484	NOUN
ajlm-760	328	2	.	.	PUNCT
ajlm-760	328	3	https://doi.org/10.1038/468483a	https://doi.org/10.1038/468483a	PROPN
ajlm-760	328	4	chin	chin	PROPN
ajlm-760	328	5	cs	cs	PROPN
ajlm-760	328	6	,	,	PUNCT
ajlm-760	328	7	sorenson	sorenson	PROPN
ajlm-760	328	8	j	j	PROPN
ajlm-760	328	9	,	,	PUNCT
ajlm-760	328	10	harris	harris	PROPN
ajlm-760	328	11	jb	jb	PROPN
ajlm-760	328	12	,	,	PUNCT
ajlm-760	328	13	et	et	PROPN
ajlm-760	328	14	al	al	PROPN
ajlm-760	328	15	.	.	PUNCT
ajlm-760	329	1	the	the	DET
ajlm-760	329	2	origin	origin	NOUN
ajlm-760	329	3	of	of	ADP
ajlm-760	329	4	the	the	DET
ajlm-760	329	5	haitian	haitian	ADJ
ajlm-760	329	6	cholera	cholera	PROPN
ajlm-760	329	7	outbreak	outbreak	NOUN
ajlm-760	329	8	strain	strain	VERB
ajlm-760	329	9	.	.	PUNCT
ajlm-760	330	1	n	n	PRON
ajlm-760	330	2	engl	engl	PROPN
ajlm-760	330	3	j	j	PROPN
ajlm-760	330	4	med	med	PROPN
ajlm-760	330	5	.	.	PUNCT
ajlm-760	331	1	2011;364(1):33–42	2011;364(1):33–42	NUM
ajlm-760	331	2	.	.	PUNCT
ajlm-760	331	3	https://doi.org/10.1056/nejmoa1012928	https://doi.org/10.1056/nejmoa1012928	PROPN
ajlm-760	331	4	talkington	talkington	PROPN
ajlm-760	331	5	d	d	PROPN
ajlm-760	331	6	,	,	PUNCT
ajlm-760	331	7	bopp	bopp	PROPN
ajlm-760	331	8	c	c	AUX
ajlm-760	331	9	,	,	PUNCT
ajlm-760	331	10	tarr	tarr	PROPN
ajlm-760	331	11	c	c	NOUN
ajlm-760	331	12	,	,	PUNCT
ajlm-760	331	13	et	et	PROPN
ajlm-760	331	14	al	al	PROPN
ajlm-760	331	15	.	.	PUNCT
ajlm-760	331	16	characterization	characterization	NOUN
ajlm-760	331	17	of	of	ADP
ajlm-760	331	18	toxigenic	toxigenic	ADJ
ajlm-760	331	19	vibrio	vibrio	ADJ
ajlm-760	331	20	cholerae	cholerae	NOUN
ajlm-760	331	21	from	from	ADP
ajlm-760	331	22	haiti	haiti	PROPN
ajlm-760	331	23	,	,	PUNCT
ajlm-760	331	24	2010–2011	2010–2011	NUM
ajlm-760	331	25	.	.	PUNCT
ajlm-760	332	1	emerg	emerg	PROPN
ajlm-760	332	2	infect	infect	PROPN
ajlm-760	332	3	dis	dis	PROPN
ajlm-760	332	4	.	.	PUNCT
ajlm-760	333	1	2011;17(11):2122–2129	2011;17(11):2122–2129	NUM
ajlm-760	333	2	.	.	PUNCT
ajlm-760	334	1	https://doi.org/10.3201/eid1711.110805	https://doi.org/10.3201/eid1711.110805	PROPN
ajlm-760	335	1	reimer	reimer	PROPN
ajlm-760	335	2	ar	ar	PROPN
ajlm-760	335	3	,	,	PUNCT
ajlm-760	335	4	van	van	PROPN
ajlm-760	335	5	dg	dg	PROPN
ajlm-760	335	6	,	,	PUNCT
ajlm-760	335	7	stroika	stroika	PROPN
ajlm-760	335	8	s	s	PROPN
ajlm-760	335	9	,	,	PUNCT
ajlm-760	335	10	et	et	PROPN
ajlm-760	335	11	al	al	PROPN
ajlm-760	335	12	.	.	PROPN
ajlm-760	335	13	comparative	comparative	ADJ
ajlm-760	335	14	genomics	genomic	NOUN
ajlm-760	335	15	of	of	ADP
ajlm-760	335	16	vibrio	vibrio	ADJ
ajlm-760	335	17	cholerae	cholerae	NOUN
ajlm-760	335	18	from	from	ADP
ajlm-760	335	19	haiti	haiti	PROPN
ajlm-760	335	20	,	,	PUNCT
ajlm-760	335	21	asia	asia	PROPN
ajlm-760	335	22	,	,	PUNCT
ajlm-760	335	23	and	and	CCONJ
ajlm-760	335	24	africa	africa	PROPN
ajlm-760	335	25	.	.	PUNCT
ajlm-760	336	1	emerg	emerg	PROPN
ajlm-760	336	2	infect	infect	PROPN
ajlm-760	336	3	dis	dis	PROPN
ajlm-760	336	4	.	.	PUNCT
ajlm-760	337	1	2011;17(11):2113–2121	2011;17(11):2113–2121	NUM
ajlm-760	337	2	.	.	PUNCT
ajlm-760	338	1	https://doi.org/10.3201/eid1711.110794	https://doi.org/10.3201/eid1711.110794	PART
ajlm-760	339	1	thompson	thompson	PROPN
ajlm-760	339	2	cc	cc	PROPN
ajlm-760	339	3	,	,	PUNCT
ajlm-760	339	4	freitas	freitas	PROPN
ajlm-760	339	5	fs	fs	PROPN
ajlm-760	339	6	,	,	PUNCT
ajlm-760	339	7	marin	marin	PROPN
ajlm-760	339	8	ma	ma	PROPN
ajlm-760	339	9	,	,	PUNCT
ajlm-760	339	10	fonseca	fonseca	PROPN
ajlm-760	339	11	el	el	PROPN
ajlm-760	339	12	,	,	PUNCT
ajlm-760	339	13	okeke	okeke	VERB
ajlm-760	339	14	in	in	ADP
ajlm-760	339	15	,	,	PUNCT
ajlm-760	339	16	vicente	vicente	PROPN
ajlm-760	339	17	ac	ac	PROPN
ajlm-760	339	18	.	.	PROPN
ajlm-760	339	19	vibrio	vibrio	PROPN
ajlm-760	339	20	cholerae	cholerae	PROPN
ajlm-760	339	21	o1	o1	PROPN
ajlm-760	339	22	lineages	lineage	NOUN
ajlm-760	339	23	driving	drive	VERB
ajlm-760	339	24	cholera	cholera	NOUN
ajlm-760	339	25	outbreaks	outbreak	NOUN
ajlm-760	339	26	during	during	ADP
ajlm-760	339	27	seventh	seventh	ADJ
ajlm-760	339	28	cholera	cholera	NOUN
ajlm-760	339	29	pandemic	pandemic	ADJ
ajlm-760	339	30	in	in	ADP
ajlm-760	339	31	ghana	ghana	PROPN
ajlm-760	339	32	.	.	PUNCT
ajlm-760	340	1	infect	infect	VERB
ajlm-760	340	2	genet	genet	NOUN
ajlm-760	340	3	evol	evol	NOUN
ajlm-760	340	4	.	.	PUNCT
ajlm-760	341	1	2011;11(8):1951–1956	2011;11(8):1951–1956	NUM
ajlm-760	341	2	.	.	PUNCT
ajlm-760	342	1	https://doi.org/10.1016/j.meegid.2011.08.020	https://doi.org/10.1016/j.meegid.2011.08.020	VERB
ajlm-760	342	2	mutreja	mutreja	ADJ
ajlm-760	342	3	a	a	PRON
ajlm-760	342	4	,	,	PUNCT
ajlm-760	342	5	kim	kim	PROPN
ajlm-760	342	6	dw	dw	PROPN
ajlm-760	342	7	,	,	PUNCT
ajlm-760	342	8	thomson	thomson	PROPN
ajlm-760	342	9	nr	nr	PROPN
ajlm-760	342	10	,	,	PUNCT
ajlm-760	342	11	et	et	PROPN
ajlm-760	342	12	al	al	PROPN
ajlm-760	342	13	.	.	PROPN
ajlm-760	342	14	evidence	evidence	NOUN
ajlm-760	342	15	for	for	ADP
ajlm-760	342	16	several	several	ADJ
ajlm-760	342	17	waves	wave	NOUN
ajlm-760	342	18	of	of	ADP
ajlm-760	342	19	global	global	ADJ
ajlm-760	342	20	transmission	transmission	NOUN
ajlm-760	342	21	in	in	ADP
ajlm-760	342	22	the	the	DET
ajlm-760	342	23	seventh	seventh	ADJ
ajlm-760	342	24	cholera	cholera	NOUN
ajlm-760	342	25	pandemic	pandemic	ADJ
ajlm-760	342	26	.	.	PUNCT
ajlm-760	343	1	nature	nature	NOUN
ajlm-760	343	2	.	.	PUNCT
ajlm-760	344	1	2011;477(7365):462–465	2011;477(7365):462–465	X
ajlm-760	344	2	.	.	PUNCT
ajlm-760	344	3	https://doi.org/10.1038/nature10392	https://doi.org/10.1038/nature10392	PROPN
ajlm-760	344	4	kiiru	kiiru	PROPN
ajlm-760	344	5	j	j	PROPN
ajlm-760	344	6	,	,	PUNCT
ajlm-760	344	7	mutreja	mutreja	INTJ
ajlm-760	344	8	a	a	PRON
ajlm-760	344	9	,	,	PUNCT
ajlm-760	344	10	mohamed	mohamed	PROPN
ajlm-760	344	11	aa	aa	PROPN
ajlm-760	344	12	,	,	PUNCT
ajlm-760	344	13	et	et	PROPN
ajlm-760	344	14	al	al	PROPN
ajlm-760	344	15	.	.	PUNCT
ajlm-760	345	1	a	a	DET
ajlm-760	345	2	study	study	NOUN
ajlm-760	345	3	on	on	ADP
ajlm-760	345	4	the	the	DET
ajlm-760	345	5	geophylogeny	geophylogeny	NOUN
ajlm-760	345	6	of	of	ADP
ajlm-760	345	7	clinical	clinical	ADJ
ajlm-760	345	8	and	and	CCONJ
ajlm-760	345	9	environmental	environmental	ADJ
ajlm-760	345	10	vibrio	vibrio	ADJ
ajlm-760	345	11	cholerae	cholerae	NOUN
ajlm-760	345	12	in	in	ADP
ajlm-760	345	13	kenya	kenya	PROPN
ajlm-760	345	14	.	.	PUNCT
ajlm-760	346	1	plos	plos	PROPN
ajlm-760	346	2	one	one	NUM
ajlm-760	346	3	.	.	PUNCT
ajlm-760	347	1	2013;8(9):e74829	2013;8(9):e74829	NOUN
ajlm-760	347	2	.	.	PUNCT
ajlm-760	348	1	https://doi.org/10.1371/journal.pone.0074829	https://doi.org/10.1371/journal.pone.0074829	PROPN
ajlm-760	348	2	kachwamba	kachwamba	PROPN
ajlm-760	348	3	y	y	PROPN
ajlm-760	348	4	,	,	PUNCT
ajlm-760	348	5	mohammed	mohammed	PROPN
ajlm-760	348	6	aa	aa	PROPN
ajlm-760	348	7	,	,	PUNCT
ajlm-760	348	8	lukupulo	lukupulo	NOUN
ajlm-760	348	9	h	h	NOUN
ajlm-760	348	10	,	,	PUNCT
ajlm-760	348	11	et	et	PROPN
ajlm-760	348	12	al	al	PROPN
ajlm-760	348	13	.	.	PUNCT
ajlm-760	349	1	genetic	genetic	ADJ
ajlm-760	349	2	characterization	characterization	NOUN
ajlm-760	349	3	of	of	ADP
ajlm-760	349	4	vibrio	vibrio	ADJ
ajlm-760	349	5	cholerae	cholerae	PROPN
ajlm-760	349	6	o1	o1	PROPN
ajlm-760	349	7	isolates	isolate	NOUN
ajlm-760	349	8	from	from	ADP
ajlm-760	349	9	outbreaks	outbreak	NOUN
ajlm-760	349	10	between	between	ADP
ajlm-760	349	11	2011	2011	NUM
ajlm-760	349	12	and	and	CCONJ
ajlm-760	349	13	2015	2015	NUM
ajlm-760	349	14	in	in	ADP
ajlm-760	349	15	tanzania	tanzania	PROPN
ajlm-760	349	16	.	.	PUNCT
ajlm-760	350	1	bmc	bmc	PROPN
ajlm-760	350	2	infect	infect	PROPN
ajlm-760	350	3	dis	dis	PROPN
ajlm-760	350	4	.	.	PUNCT
ajlm-760	351	1	2017;17(1):157	2017;17(1):157	NUM
ajlm-760	351	2	.	.	PUNCT
ajlm-760	352	1	https://doi.org/10.1186/s12879-017-2252-9	https://doi.org/10.1186/s12879-017-2252-9	NUM
ajlm-760	352	2	kaas	kaas	NOUN
ajlm-760	352	3	rs	r	NOUN
ajlm-760	352	4	,	,	PUNCT
ajlm-760	352	5	ngandjio	ngandjio	PROPN
ajlm-760	352	6	a	a	PRON
ajlm-760	352	7	,	,	PUNCT
ajlm-760	352	8	nzouankeu	nzouankeu	NOUN
ajlm-760	352	9	a	a	NOUN
ajlm-760	352	10	,	,	PUNCT
ajlm-760	352	11	et	et	PROPN
ajlm-760	352	12	al	al	PROPN
ajlm-760	352	13	.	.	PUNCT
ajlm-760	353	1	the	the	DET
ajlm-760	353	2	lake	lake	PROPN
ajlm-760	353	3	chad	chad	PROPN
ajlm-760	353	4	basin	basin	PROPN
ajlm-760	353	5	,	,	PUNCT
ajlm-760	353	6	an	an	DET
ajlm-760	353	7	isolated	isolated	ADJ
ajlm-760	353	8	and	and	CCONJ
ajlm-760	353	9	persistent	persistent	ADJ
ajlm-760	353	10	reservoir	reservoir	NOUN
ajlm-760	353	11	of	of	ADP
ajlm-760	353	12	vibrio	vibrio	ADJ
ajlm-760	353	13	cholerae	cholerae	PROPN
ajlm-760	353	14	o1	o1	PROPN
ajlm-760	353	15	:	:	PUNCT
ajlm-760	353	16	a	a	DET
ajlm-760	353	17	genomic	genomic	NOUN
ajlm-760	353	18	insight	insight	NOUN
ajlm-760	353	19	into	into	ADP
ajlm-760	353	20	the	the	DET
ajlm-760	353	21	outbreak	outbreak	NOUN
ajlm-760	353	22	in	in	ADP
ajlm-760	353	23	cameroon	cameroon	PROPN
ajlm-760	353	24	,	,	PUNCT
ajlm-760	353	25	2010	2010	NUM
ajlm-760	353	26	.	.	PUNCT
ajlm-760	354	1	plos	plos	PROPN
ajlm-760	354	2	one	one	NUM
ajlm-760	354	3	.	.	PUNCT
ajlm-760	355	1	2016;11(5):e0155691	2016;11(5):e0155691	X
ajlm-760	355	2	.	.	PUNCT
ajlm-760	356	1	https://doi.org/10.1371/journal.pone.0155691	https://doi.org/10.1371/journal.pone.0155691	PROPN
ajlm-760	356	2	marin	marin	PROPN
ajlm-760	356	3	ma	ma	PROPN
ajlm-760	356	4	,	,	PUNCT
ajlm-760	356	5	thompson	thompson	PROPN
ajlm-760	356	6	cc	cc	PROPN
ajlm-760	356	7	,	,	PUNCT
ajlm-760	356	8	freitas	freitas	PROPN
ajlm-760	356	9	fs	fs	PROPN
ajlm-760	356	10	,	,	PUNCT
ajlm-760	356	11	et	et	PROPN
ajlm-760	356	12	al	al	PROPN
ajlm-760	356	13	.	.	PROPN
ajlm-760	356	14	cholera	cholera	NOUN
ajlm-760	356	15	outbreaks	outbreak	NOUN
ajlm-760	356	16	in	in	ADP
ajlm-760	356	17	nigeria	nigeria	PROPN
ajlm-760	356	18	are	be	AUX
ajlm-760	356	19	associated	associate	VERB
ajlm-760	356	20	with	with	ADP
ajlm-760	356	21	multidrug	multidrug	NOUN
ajlm-760	356	22	resistant	resistant	ADJ
ajlm-760	356	23	atypical	atypical	ADJ
ajlm-760	356	24	el	el	PROPN
ajlm-760	356	25	tor	tor	NOUN
ajlm-760	356	26	and	and	CCONJ
ajlm-760	356	27	non	non	ADJ
ajlm-760	356	28	-	-	ADJ
ajlm-760	356	29	o1	o1	ADJ
ajlm-760	356	30	/	/	SYM
ajlm-760	356	31	non	non	ADJ
ajlm-760	356	32	-	-	ADJ
ajlm-760	356	33	o139	o139	PROPN
ajlm-760	356	34	vibrio	vibrio	ADJ
ajlm-760	356	35	cholerae	cholerae	NOUN
ajlm-760	356	36	.	.	PUNCT
ajlm-760	357	1	plos	plos	PROPN
ajlm-760	357	2	negl	negl	PROPN
ajlm-760	357	3	trop	trop	X
ajlm-760	357	4	dis	dis	PROPN
ajlm-760	357	5	.	.	PUNCT
ajlm-760	358	1	2013;7(2):e2049	2013;7(2):e2049	PROPN
ajlm-760	358	2	.	.	PUNCT
ajlm-760	359	1	https://doi.org/10.1371/journal.pntd.0002049	https://doi.org/10.1371/journal.pntd.0002049	PRON
ajlm-760	359	2	mercy	mercy	NOUN
ajlm-760	359	3	n	n	CCONJ
ajlm-760	359	4	,	,	PUNCT
ajlm-760	359	5	mohamed	mohamed	PROPN
ajlm-760	359	6	aa	aa	PROPN
ajlm-760	359	7	,	,	PUNCT
ajlm-760	359	8	zipporah	zipporah	NUM
ajlm-760	359	9	n	n	CCONJ
ajlm-760	359	10	,	,	PUNCT
ajlm-760	359	11	et	et	PROPN
ajlm-760	359	12	al	al	PROPN
ajlm-760	359	13	.	.	PROPN
ajlm-760	359	14	phenotypic	phenotypic	ADJ
ajlm-760	359	15	and	and	CCONJ
ajlm-760	359	16	genetic	genetic	ADJ
ajlm-760	359	17	characterization	characterization	NOUN
ajlm-760	359	18	of	of	ADP
ajlm-760	359	19	vibrio	vibrio	ADJ
ajlm-760	359	20	cholerae	cholerae	PROPN
ajlm-760	359	21	o1	o1	PROPN
ajlm-760	359	22	isolated	isolate	VERB
ajlm-760	359	23	from	from	ADP
ajlm-760	359	24	various	various	ADJ
ajlm-760	359	25	regions	region	NOUN
ajlm-760	359	26	of	of	ADP
ajlm-760	359	27	kenya	kenya	NOUN
ajlm-760	359	28	between	between	ADP
ajlm-760	359	29	2007	2007	NUM
ajlm-760	359	30	and	and	CCONJ
ajlm-760	359	31	2010	2010	NUM
ajlm-760	359	32	.	.	PUNCT
ajlm-760	360	1	pan	pan	PROPN
ajlm-760	360	2	afr	afr	PROPN
ajlm-760	360	3	med	med	PROPN
ajlm-760	360	4	j.	j.	PROPN
ajlm-760	360	5	2014;19:8	2014;19:8	PROPN
ajlm-760	360	6	.	.	PUNCT
ajlm-760	361	1	https://doi.org/10.11604/pamj.2014.19.8.2496	https://doi.org/10.11604/pamj.2014.19.8.2496	NUM
ajlm-760	361	2	mahmud	mahmud	PROPN
ajlm-760	361	3	zh	zh	PROPN
ajlm-760	361	4	,	,	PUNCT
ajlm-760	361	5	islam	islam	PROPN
ajlm-760	361	6	s	s	PROPN
ajlm-760	361	7	,	,	PUNCT
ajlm-760	361	8	zaman	zaman	PROPN
ajlm-760	361	9	ru	ru	PROPN
ajlm-760	361	10	,	,	PUNCT
ajlm-760	361	11	et	et	PROPN
ajlm-760	361	12	al	al	PROPN
ajlm-760	361	13	.	.	PROPN
ajlm-760	362	1	phenotypic	phenotypic	ADJ
ajlm-760	362	2	and	and	CCONJ
ajlm-760	362	3	genotypic	genotypic	NOUN
ajlm-760	362	4	characteristics	characteristic	NOUN
ajlm-760	362	5	of	of	ADP
ajlm-760	362	6	vibrio	vibrio	ADJ
ajlm-760	362	7	cholerae	cholerae	PROPN
ajlm-760	362	8	o1	o1	PROPN
ajlm-760	362	9	isolated	isolate	VERB
ajlm-760	362	10	from	from	ADP
ajlm-760	362	11	the	the	DET
ajlm-760	362	12	sierra	sierra	PROPN
ajlm-760	362	13	leone	leone	PROPN
ajlm-760	362	14	cholera	cholera	NOUN
ajlm-760	362	15	outbreak	outbreak	NOUN
ajlm-760	362	16	in	in	ADP
ajlm-760	362	17	2012	2012	NUM
ajlm-760	362	18	.	.	PUNCT
ajlm-760	363	1	trans	trans	PROPN
ajlm-760	363	2	r	r	PROPN
ajlm-760	363	3	soc	soc	PROPN
ajlm-760	363	4	trop	trop	X
ajlm-760	363	5	med	med	PROPN
ajlm-760	363	6	hyg	hyg	PROPN
ajlm-760	363	7	.	.	PROPN
ajlm-760	363	8	2014;108(11):715–720	2014;108(11):715–720	X
ajlm-760	363	9	.	.	PUNCT
ajlm-760	364	1	https://doi.org/10.1093/trstmh/tru137	https://doi.org/10.1093/trstmh/tru137	VERB
ajlm-760	364	2	smith	smith	PROPN
ajlm-760	364	3	am	am	PROPN
ajlm-760	364	4	,	,	PUNCT
ajlm-760	364	5	njanpop	njanpop	NOUN
ajlm-760	364	6	-	-	PUNCT
ajlm-760	364	7	lafourcade	lafourcade	NOUN
ajlm-760	364	8	bm	bm	PROPN
ajlm-760	364	9	,	,	PUNCT
ajlm-760	364	10	mengel	mengel	PROPN
ajlm-760	364	11	ma	ma	PROPN
ajlm-760	364	12	,	,	PUNCT
ajlm-760	364	13	et	et	PROPN
ajlm-760	364	14	al	al	PROPN
ajlm-760	364	15	.	.	PROPN
ajlm-760	364	16	comparative	comparative	ADJ
ajlm-760	364	17	characterization	characterization	NOUN
ajlm-760	364	18	of	of	ADP
ajlm-760	364	19	vibrio	vibrio	ADJ
ajlm-760	364	20	cholerae	cholerae	PROPN
ajlm-760	364	21	o1	o1	PROPN
ajlm-760	364	22	from	from	ADP
ajlm-760	364	23	five	five	NUM
ajlm-760	364	24	sub	sub	ADJ
ajlm-760	364	25	-	-	ADJ
ajlm-760	364	26	saharan	saharan	ADJ
ajlm-760	364	27	african	african	ADJ
ajlm-760	364	28	countries	country	NOUN
ajlm-760	364	29	using	use	VERB
ajlm-760	364	30	various	various	ADJ
ajlm-760	364	31	phenotypic	phenotypic	ADJ
ajlm-760	364	32	and	and	CCONJ
ajlm-760	364	33	genotypic	genotypic	NOUN
ajlm-760	364	34	techniques	technique	NOUN
ajlm-760	364	35	.	.	PUNCT
ajlm-760	365	1	plos	plos	PROPN
ajlm-760	365	2	one	one	NUM
ajlm-760	365	3	.	.	PUNCT
ajlm-760	366	1	2015;10(11):e0142989	2015;10(11):e0142989	PROPN
ajlm-760	366	2	.	.	PUNCT
ajlm-760	367	1	https://doi.org/10.1371/journal.pone.0142989	https://doi.org/10.1371/journal.pone.0142989	SCONJ
ajlm-760	367	2	moore	moore	PROPN
ajlm-760	367	3	s	s	PROPN
ajlm-760	367	4	,	,	PUNCT
ajlm-760	367	5	miwanda	miwanda	PROPN
ajlm-760	367	6	b	b	NOUN
ajlm-760	367	7	,	,	PUNCT
ajlm-760	367	8	sadji	sadji	PROPN
ajlm-760	367	9	ay	ay	PROPN
ajlm-760	367	10	,	,	PUNCT
ajlm-760	367	11	et	et	PROPN
ajlm-760	367	12	al	al	PROPN
ajlm-760	367	13	.	.	PROPN
ajlm-760	367	14	relationship	relationship	NOUN
ajlm-760	367	15	between	between	ADP
ajlm-760	367	16	distinct	distinct	ADJ
ajlm-760	367	17	african	african	ADJ
ajlm-760	367	18	cholera	cholera	NOUN
ajlm-760	367	19	epidemics	epidemic	NOUN
ajlm-760	367	20	revealed	reveal	VERB
ajlm-760	367	21	via	via	ADP
ajlm-760	367	22	mlva	mlva	ADJ
ajlm-760	367	23	haplotyping	haplotyping	NOUN
ajlm-760	367	24	of	of	ADP
ajlm-760	367	25	337	337	NUM
ajlm-760	367	26	vibrio	vibrio	ADJ
ajlm-760	367	27	cholerae	cholerae	PROPN
ajlm-760	367	28	isolates	isolate	NOUN
ajlm-760	367	29	.	.	PUNCT
ajlm-760	368	1	plos	plos	PROPN
ajlm-760	368	2	negl	negl	PROPN
ajlm-760	368	3	trop	trop	X
ajlm-760	368	4	dis	dis	PROPN
ajlm-760	368	5	.	.	PUNCT
ajlm-760	369	1	2015;9(6):e0003817	2015;9(6):e0003817	X
ajlm-760	369	2	.	.	PUNCT
ajlm-760	370	1	https://doi.org/10.1371/journal.pntd.0003817	https://doi.org/10.1371/journal.pntd.0003817	NOUN
ajlm-760	370	2	eibach	eibach	NOUN
ajlm-760	370	3	d	d	NOUN
ajlm-760	370	4	,	,	PUNCT
ajlm-760	370	5	herrera	herrera	NOUN
ajlm-760	370	6	-	-	PUNCT
ajlm-760	370	7	leon	leon	PROPN
ajlm-760	370	8	s	s	PROPN
ajlm-760	370	9	,	,	PUNCT
ajlm-760	370	10	gil	gil	PROPN
ajlm-760	370	11	h	h	NOUN
ajlm-760	370	12	,	,	PUNCT
ajlm-760	370	13	et	et	PROPN
ajlm-760	370	14	al	al	PROPN
ajlm-760	370	15	.	.	PROPN
ajlm-760	371	1	molecular	molecular	ADJ
ajlm-760	371	2	epidemiology	epidemiology	NOUN
ajlm-760	371	3	and	and	CCONJ
ajlm-760	371	4	antibiotic	antibiotic	ADJ
ajlm-760	371	5	susceptibility	susceptibility	NOUN
ajlm-760	371	6	of	of	ADP
ajlm-760	371	7	vibrio	vibrio	ADJ
ajlm-760	371	8	cholerae	cholerae	NOUN
ajlm-760	371	9	associated	associate	VERB
ajlm-760	371	10	with	with	ADP
ajlm-760	371	11	a	a	DET
ajlm-760	371	12	large	large	ADJ
ajlm-760	371	13	cholera	cholera	NOUN
ajlm-760	371	14	outbreak	outbreak	NOUN
ajlm-760	371	15	in	in	ADP
ajlm-760	371	16	ghana	ghana	PROPN
ajlm-760	371	17	in	in	ADP
ajlm-760	371	18	2014	2014	NUM
ajlm-760	371	19	.	.	PUNCT
ajlm-760	372	1	plos	plos	PROPN
ajlm-760	372	2	negl	negl	PROPN
ajlm-760	372	3	trop	trop	X
ajlm-760	372	4	dis	dis	PROPN
ajlm-760	372	5	.	.	PUNCT
ajlm-760	373	1	2016;10(5):e0004751	2016;10(5):e0004751	NUM
ajlm-760	373	2	.	.	PUNCT
ajlm-760	374	1	https://doi.org/10.1371/journal.pntd.0004751	https://doi.org/10.1371/journal.pntd.0004751	PROPN
ajlm-760	374	2	pillay	pillay	PROPN
ajlm-760	374	3	dg	dg	PROPN
ajlm-760	374	4	,	,	PUNCT
ajlm-760	374	5	karas	karas	PROPN
ajlm-760	374	6	ja	ja	PROPN
ajlm-760	374	7	,	,	PUNCT
ajlm-760	374	8	pillay	pillay	PROPN
ajlm-760	374	9	a	a	PROPN
ajlm-760	374	10	,	,	PUNCT
ajlm-760	374	11	sturm	sturm	PROPN
ajlm-760	374	12	aw	aw	INTJ
ajlm-760	374	13	.	.	PUNCT
ajlm-760	374	14	nosocomial	nosocomial	ADJ
ajlm-760	374	15	transmission	transmission	NOUN
ajlm-760	374	16	of	of	ADP
ajlm-760	374	17	shigella	shigella	PROPN
ajlm-760	374	18	dysenteriae	dysenteriae	NOUN
ajlm-760	374	19	type	type	NOUN
ajlm-760	374	20	1	1	NUM
ajlm-760	374	21	.	.	PUNCT
ajlm-760	375	1	j	j	PROPN
ajlm-760	375	2	hosp	hosp	PROPN
ajlm-760	375	3	infect	infect	PROPN
ajlm-760	375	4	.	.	PUNCT
ajlm-760	376	1	1997;37(3):199–205	1997;37(3):199–205	X
ajlm-760	376	2	.	.	PUNCT
ajlm-760	376	3	https://doi.org/10.1016/s0195-6701(97)90248-6	https://doi.org/10.1016/s0195-6701(97)90248-6	PROPN
ajlm-760	376	4	bercion	bercion	PROPN
ajlm-760	376	5	r	r	NOUN
ajlm-760	376	6	,	,	PUNCT
ajlm-760	376	7	demartin	demartin	PROPN
ajlm-760	376	8	m	m	PROPN
ajlm-760	376	9	,	,	PUNCT
ajlm-760	376	10	recio	recio	PROPN
ajlm-760	376	11	c	c	PROPN
ajlm-760	376	12	,	,	PUNCT
ajlm-760	376	13	et	et	PROPN
ajlm-760	376	14	al	al	PROPN
ajlm-760	376	15	.	.	PROPN
ajlm-760	376	16	molecular	molecular	ADJ
ajlm-760	376	17	epidemiology	epidemiology	NOUN
ajlm-760	376	18	of	of	ADP
ajlm-760	376	19	multidrug	multidrug	NOUN
ajlm-760	376	20	-	-	PUNCT
ajlm-760	376	21	resistant	resistant	ADJ
ajlm-760	376	22	shigella	shigella	NOUN
ajlm-760	376	23	dysenteriae	dysenteriae	NOUN
ajlm-760	376	24	type	type	NOUN
ajlm-760	376	25	1	1	NUM
ajlm-760	376	26	causing	cause	VERB
ajlm-760	376	27	dysentery	dysentery	ADJ
ajlm-760	376	28	outbreaks	outbreak	NOUN
ajlm-760	376	29	in	in	ADP
ajlm-760	376	30	central	central	ADJ
ajlm-760	376	31	african	african	ADJ
ajlm-760	376	32	republic	republic	NOUN
ajlm-760	376	33	,	,	PUNCT
ajlm-760	376	34	2003–2004	2003–2004	NUM
ajlm-760	376	35	.	.	PUNCT
ajlm-760	377	1	trans	trans	PROPN
ajlm-760	377	2	r	r	PROPN
ajlm-760	377	3	soc	soc	PROPN
ajlm-760	377	4	trop	trop	X
ajlm-760	377	5	med	med	PROPN
ajlm-760	377	6	hyg	hyg	PROPN
ajlm-760	377	7	.	.	PROPN
ajlm-760	377	8	2006;100(12):1151–1158	2006;100(12):1151–1158	NUM
ajlm-760	377	9	.	.	PUNCT
ajlm-760	378	1	https://doi.org/10.1016/j.trstmh.2006.02.007	https://doi.org/10.1016/j.trstmh.2006.02.007	PROPN
ajlm-760	378	2	smith	smith	PROPN
ajlm-760	378	3	am	be	AUX
ajlm-760	378	4	,	,	PUNCT
ajlm-760	378	5	keddy	keddy	PROPN
ajlm-760	378	6	kh	kh	PROPN
ajlm-760	378	7	,	,	PUNCT
ajlm-760	378	8	sooka	sooka	VERB
ajlm-760	378	9	a	a	PRON
ajlm-760	378	10	,	,	PUNCT
ajlm-760	378	11	ismail	ismail	PROPN
ajlm-760	378	12	h	h	PROPN
ajlm-760	378	13	,	,	PUNCT
ajlm-760	378	14	de	de	PROPN
ajlm-760	378	15	jong	jong	PROPN
ajlm-760	378	16	gm	gm	PROPN
ajlm-760	378	17	,	,	PUNCT
ajlm-760	378	18	hoyland	hoyland	PROPN
ajlm-760	378	19	g.	g.	PROPN
ajlm-760	378	20	analysis	analysis	NOUN
ajlm-760	378	21	of	of	ADP
ajlm-760	378	22	a	a	DET
ajlm-760	378	23	temporal	temporal	ADJ
ajlm-760	378	24	cluster	cluster	NOUN
ajlm-760	378	25	of	of	ADP
ajlm-760	378	26	shigella	shigella	PROPN
ajlm-760	378	27	boydii	boydii	PROPN
ajlm-760	378	28	isolates	isolate	NOUN
ajlm-760	378	29	in	in	ADP
ajlm-760	378	30	mpumalanga	mpumalanga	PROPN
ajlm-760	378	31	,	,	PUNCT
ajlm-760	378	32	south	south	PROPN
ajlm-760	378	33	africa	africa	PROPN
ajlm-760	378	34	,	,	PUNCT
ajlm-760	378	35	november	november	PROPN
ajlm-760	378	36	to	to	ADP
ajlm-760	378	37	december	december	PROPN
ajlm-760	378	38	2007	2007	NUM
ajlm-760	378	39	.	.	PUNCT
ajlm-760	379	1	j	j	PROPN
ajlm-760	379	2	infect	infect	PROPN
ajlm-760	379	3	dev	dev	PROPN
ajlm-760	379	4	ctries	ctrie	NOUN
ajlm-760	379	5	.	.	PUNCT
ajlm-760	380	1	2009;3(1):65–70	2009;3(1):65–70	NUM
ajlm-760	380	2	.	.	PUNCT
ajlm-760	381	1	https://doi.org/10.3855/jidc.107	https://doi.org/10.3855/jidc.107	PROPN
ajlm-760	382	1	connor	connor	NOUN
ajlm-760	382	2	tr	tr	VERB
ajlm-760	382	3	,	,	PUNCT
ajlm-760	382	4	barker	barker	PROPN
ajlm-760	382	5	cr	cr	PROPN
ajlm-760	382	6	,	,	PUNCT
ajlm-760	382	7	baker	baker	PROPN
ajlm-760	382	8	ks	ks	PROPN
ajlm-760	382	9	,	,	PUNCT
ajlm-760	382	10	et	et	PROPN
ajlm-760	382	11	al	al	PROPN
ajlm-760	382	12	.	.	PUNCT
ajlm-760	383	1	species	specie	NOUN
ajlm-760	383	2	-	-	PUNCT
ajlm-760	383	3	wide	wide	ADJ
ajlm-760	383	4	whole	whole	ADJ
ajlm-760	383	5	genome	genome	NOUN
ajlm-760	383	6	sequencing	sequencing	NOUN
ajlm-760	383	7	reveals	reveal	VERB
ajlm-760	383	8	historical	historical	ADJ
ajlm-760	383	9	global	global	ADJ
ajlm-760	383	10	spread	spread	NOUN
ajlm-760	383	11	and	and	CCONJ
ajlm-760	383	12	recent	recent	ADJ
ajlm-760	383	13	local	local	ADJ
ajlm-760	383	14	persistence	persistence	NOUN
ajlm-760	383	15	in	in	ADP
ajlm-760	383	16	shigella	shigella	PROPN
ajlm-760	383	17	flexneri	flexneri	PROPN
ajlm-760	383	18	.	.	PUNCT
ajlm-760	384	1	elife	elife	NOUN
ajlm-760	384	2	.	.	PUNCT
ajlm-760	385	1	2015;4	2015;4	NUM
ajlm-760	385	2	:	:	PUNCT
ajlm-760	385	3	e07335	e07335	PROPN
ajlm-760	385	4	.	.	PUNCT
ajlm-760	386	1	https://doi.org/10.7554/elife.07335.:10	https://doi.org/10.7554/elife.07335.:10	PROPN
ajlm-760	386	2	.	.	PUNCT
ajlm-760	387	1	njamkepo	njamkepo	PROPN
ajlm-760	387	2	e	e	NOUN
ajlm-760	387	3	,	,	PUNCT
ajlm-760	387	4	fawal	fawal	NOUN
ajlm-760	387	5	n	n	PRON
ajlm-760	387	6	,	,	PUNCT
ajlm-760	387	7	tran	tran	PROPN
ajlm-760	387	8	-	-	PUNCT
ajlm-760	387	9	dien	dien	VERB
ajlm-760	387	10	a	a	DET
ajlm-760	387	11	,	,	PUNCT
ajlm-760	387	12	et	et	PROPN
ajlm-760	387	13	al	al	PROPN
ajlm-760	387	14	.	.	PUNCT
ajlm-760	387	15	global	global	ADJ
ajlm-760	387	16	phylogeography	phylogeography	NOUN
ajlm-760	387	17	and	and	CCONJ
ajlm-760	387	18	evolutionary	evolutionary	ADJ
ajlm-760	387	19	history	history	NOUN
ajlm-760	387	20	of	of	ADP
ajlm-760	387	21	shigella	shigella	PROPN
ajlm-760	387	22	dysenteriae	dysenteriae	NOUN
ajlm-760	387	23	type	type	NOUN
ajlm-760	387	24	1	1	NUM
ajlm-760	387	25	.	.	PUNCT
ajlm-760	388	1	nat	nat	PROPN
ajlm-760	388	2	microbiol	microbiol	PROPN
ajlm-760	388	3	.	.	PUNCT
ajlm-760	389	1	2016;1:16027	2016;1:16027	NUM
ajlm-760	389	2	.	.	PUNCT
ajlm-760	390	1	https://doi.org/10.1038/nmicrobiol.2016.27	https://doi.org/10.1038/nmicrobiol.2016.27	PROPN
ajlm-760	390	2	okeke	okeke	VERB
ajlm-760	390	3	in	in	ADP
ajlm-760	390	4	,	,	PUNCT
ajlm-760	390	5	ojo	ojo	PROPN
ajlm-760	390	6	o	o	NOUN
ajlm-760	390	7	,	,	PUNCT
ajlm-760	390	8	lamikanra	lamikanra	NOUN
ajlm-760	390	9	a	a	DET
ajlm-760	390	10	,	,	PUNCT
ajlm-760	390	11	kaper	kaper	ADJ
ajlm-760	390	12	jb	jb	PROPN
ajlm-760	390	13	.	.	PUNCT
ajlm-760	390	14	etiology	etiology	NOUN
ajlm-760	390	15	of	of	ADP
ajlm-760	390	16	acute	acute	ADJ
ajlm-760	390	17	diarrhea	diarrhea	NOUN
ajlm-760	390	18	in	in	ADP
ajlm-760	390	19	adults	adult	NOUN
ajlm-760	390	20	in	in	ADP
ajlm-760	390	21	southwestern	southwestern	ADJ
ajlm-760	390	22	nigeria	nigeria	PROPN
ajlm-760	390	23	.	.	PUNCT
ajlm-760	391	1	j	j	PROPN
ajlm-760	391	2	clin	clin	PROPN
ajlm-760	391	3	microbiol	microbiol	PROPN
ajlm-760	391	4	.	.	PUNCT
ajlm-760	392	1	2003;41(10):4525–4530	2003;41(10):4525–4530	NUM
ajlm-760	392	2	.	.	PUNCT
ajlm-760	393	1	https://doi.org/10.1128/jcm.41.10.4525-4530.2003	https://doi.org/10.1128/jcm.41.10.4525-4530.2003	NOUN
ajlm-760	393	2	tau	tau	PROPN
ajlm-760	393	3	np	np	INTJ
ajlm-760	393	4	,	,	PUNCT
ajlm-760	393	5	meidany	meidany	NOUN
ajlm-760	393	6	p	p	NOUN
ajlm-760	393	7	,	,	PUNCT
ajlm-760	393	8	smith	smith	PROPN
ajlm-760	393	9	am	am	PROPN
ajlm-760	393	10	,	,	PUNCT
ajlm-760	393	11	sooka	sooka	VERB
ajlm-760	393	12	a	a	PRON
ajlm-760	393	13	,	,	PUNCT
ajlm-760	393	14	keddy	keddy	PROPN
ajlm-760	393	15	kh	kh	PROPN
ajlm-760	393	16	.	.	PROPN
ajlm-760	393	17	escherichia	escherichia	NOUN
ajlm-760	393	18	coli	coli	NOUN
ajlm-760	393	19	o104	o104	PROPN
ajlm-760	393	20	associated	associate	VERB
ajlm-760	393	21	with	with	ADP
ajlm-760	393	22	human	human	ADJ
ajlm-760	393	23	diarrhea	diarrhea	PROPN
ajlm-760	393	24	,	,	PUNCT
ajlm-760	393	25	south	south	PROPN
ajlm-760	393	26	africa	africa	PROPN
ajlm-760	393	27	,	,	PUNCT
ajlm-760	393	28	2004–2011	2004–2011	NUM
ajlm-760	393	29	.	.	PUNCT
ajlm-760	394	1	emerg	emerg	PROPN
ajlm-760	394	2	infect	infect	PROPN
ajlm-760	394	3	dis	dis	PROPN
ajlm-760	394	4	.	.	PUNCT
ajlm-760	395	1	2012;18(8):1314–1317	2012;18(8):1314–1317	NOUN
ajlm-760	395	2	.	.	PUNCT
ajlm-760	396	1	https://doi.org/10.3201/eid1808.111616	https://doi.org/10.3201/eid1808.111616	PRON
ajlm-760	396	2	bielaszewska	bielaszewska	PROPN
ajlm-760	396	3	m	m	PROPN
ajlm-760	396	4	,	,	PUNCT
ajlm-760	396	5	mellmann	mellmann	VERB
ajlm-760	396	6	a	a	PRON
ajlm-760	396	7	,	,	PUNCT
ajlm-760	396	8	zhang	zhang	PROPN
ajlm-760	396	9	w	w	PROPN
ajlm-760	396	10	,	,	PUNCT
ajlm-760	396	11	et	et	PROPN
ajlm-760	396	12	al	al	PROPN
ajlm-760	396	13	.	.	PROPN
ajlm-760	396	14	characterisation	characterisation	NOUN
ajlm-760	396	15	of	of	ADP
ajlm-760	396	16	the	the	DET
ajlm-760	396	17	escherichia	escherichia	NOUN
ajlm-760	396	18	coli	coli	NOUN
ajlm-760	396	19	strain	strain	NOUN
ajlm-760	396	20	associated	associate	VERB
ajlm-760	396	21	with	with	ADP
ajlm-760	396	22	an	an	DET
ajlm-760	396	23	outbreak	outbreak	NOUN
ajlm-760	396	24	of	of	ADP
ajlm-760	396	25	haemolytic	haemolytic	ADJ
ajlm-760	396	26	uraemic	uraemic	ADJ
ajlm-760	396	27	syndrome	syndrome	NOUN
ajlm-760	396	28	in	in	ADP
ajlm-760	396	29	germany	germany	PROPN
ajlm-760	396	30	,	,	PUNCT
ajlm-760	396	31	2011	2011	NUM
ajlm-760	396	32	:	:	PUNCT
ajlm-760	396	33	a	a	DET
ajlm-760	396	34	microbiological	microbiological	ADJ
ajlm-760	396	35	study	study	NOUN
ajlm-760	396	36	.	.	PUNCT
ajlm-760	397	1	lancet	lancet	PROPN
ajlm-760	397	2	infect	infect	PROPN
ajlm-760	397	3	dis	dis	PROPN
ajlm-760	397	4	.	.	PUNCT
ajlm-760	398	1	2011;11(9):671–676	2011;11(9):671–676	NUM
ajlm-760	398	2	.	.	NOUN
ajlm-760	398	3	https://doi.org/10.1016/s1473-3099(11)70165-7	https://doi.org/10.1016/s1473-3099(11)70165-7	PROPN
ajlm-760	398	4	dallman	dallman	PROPN
ajlm-760	398	5	tj	tj	PROPN
ajlm-760	398	6	,	,	PUNCT
ajlm-760	398	7	byrne	byrne	PROPN
ajlm-760	398	8	l	l	PROPN
ajlm-760	398	9	,	,	PUNCT
ajlm-760	398	10	ashton	ashton	PROPN
ajlm-760	398	11	pm	pm	PROPN
ajlm-760	398	12	,	,	PUNCT
ajlm-760	398	13	et	et	PROPN
ajlm-760	398	14	al	al	PROPN
ajlm-760	398	15	.	.	PUNCT
ajlm-760	399	1	whole	whole	ADJ
ajlm-760	399	2	-	-	PUNCT
ajlm-760	399	3	genome	genome	NOUN
ajlm-760	399	4	sequencing	sequencing	NOUN
ajlm-760	399	5	for	for	ADP
ajlm-760	399	6	national	national	ADJ
ajlm-760	399	7	surveillance	surveillance	NOUN
ajlm-760	399	8	of	of	ADP
ajlm-760	399	9	shiga	shiga	ADJ
ajlm-760	399	10	toxin	toxin	NOUN
ajlm-760	399	11	-	-	PUNCT
ajlm-760	399	12	producing	produce	VERB
ajlm-760	399	13	escherichia	escherichia	NOUN
ajlm-760	399	14	coli	coli	NOUN
ajlm-760	399	15	o157	o157	PROPN
ajlm-760	399	16	.	.	PUNCT
ajlm-760	400	1	clin	clin	PROPN
ajlm-760	400	2	infect	infect	PROPN
ajlm-760	400	3	dis	dis	PROPN
ajlm-760	400	4	.	.	PUNCT
ajlm-760	401	1	2015;61(3):305–312	2015;61(3):305–312	NUM
ajlm-760	401	2	.	.	PUNCT
ajlm-760	402	1	https://doi.org/10.1093/cid/civ318	https://doi.org/10.1093/cid/civ318	PROPN
ajlm-760	402	2	den	den	PROPN
ajlm-760	402	3	bakker	bakker	PROPN
ajlm-760	402	4	hc	hc	PROPN
ajlm-760	402	5	,	,	PUNCT
ajlm-760	402	6	allard	allard	PROPN
ajlm-760	402	7	mw	mw	PROPN
ajlm-760	402	8	,	,	PUNCT
ajlm-760	402	9	bopp	bopp	PROPN
ajlm-760	402	10	d	d	PROPN
ajlm-760	402	11	,	,	PUNCT
ajlm-760	402	12	et	et	PROPN
ajlm-760	402	13	al	al	PROPN
ajlm-760	402	14	.	.	PROPN
ajlm-760	403	1	rapid	rapid	ADJ
ajlm-760	403	2	whole	whole	ADJ
ajlm-760	403	3	-	-	PUNCT
ajlm-760	403	4	genome	genome	NOUN
ajlm-760	403	5	sequencing	sequencing	NOUN
ajlm-760	403	6	for	for	ADP
ajlm-760	403	7	surveillance	surveillance	NOUN
ajlm-760	403	8	of	of	ADP
ajlm-760	403	9	salmonella	salmonella	PROPN
ajlm-760	403	10	enterica	enterica	PROPN
ajlm-760	403	11	serovar	serovar	NOUN
ajlm-760	403	12	enteritidis	enteritidis	NOUN
ajlm-760	403	13	.	.	PUNCT
ajlm-760	404	1	emerg	emerg	PROPN
ajlm-760	404	2	infect	infect	ADJ
ajlm-760	404	3	dis	dis	PROPN
ajlm-760	404	4	.	.	PUNCT
ajlm-760	405	1	2014;20(8):1306–1314	2014;20(8):1306–1314	NUM
ajlm-760	405	2	.	.	PUNCT
ajlm-760	406	1	https://doi.org/10.3201/eid2008.131399	https://doi.org/10.3201/eid2008.131399	PROPN
ajlm-760	407	1	moura	moura	PROPN
ajlm-760	407	2	a	a	PRON
ajlm-760	407	3	,	,	PUNCT
ajlm-760	407	4	tourdjman	tourdjman	NOUN
ajlm-760	407	5	m	m	PROPN
ajlm-760	407	6	,	,	PUNCT
ajlm-760	407	7	leclercq	leclercq	VERB
ajlm-760	407	8	a	a	PRON
ajlm-760	407	9	,	,	PUNCT
ajlm-760	407	10	et	et	PROPN
ajlm-760	407	11	al	al	PROPN
ajlm-760	407	12	.	.	PUNCT
ajlm-760	408	1	real	real	ADJ
ajlm-760	408	2	-	-	PUNCT
ajlm-760	408	3	time	time	NOUN
ajlm-760	408	4	whole	whole	ADJ
ajlm-760	408	5	-	-	PUNCT
ajlm-760	408	6	genome	genome	NOUN
ajlm-760	408	7	sequencing	sequencing	NOUN
ajlm-760	408	8	for	for	ADP
ajlm-760	408	9	surveillance	surveillance	NOUN
ajlm-760	408	10	of	of	ADP
ajlm-760	408	11	listeria	listeria	NOUN
ajlm-760	408	12	monocytogenes	monocytogene	NOUN
ajlm-760	408	13	,	,	PUNCT
ajlm-760	408	14	france	france	PROPN
ajlm-760	408	15	.	.	PUNCT
ajlm-760	409	1	emerg	emerg	PROPN
ajlm-760	409	2	infect	infect	PROPN
ajlm-760	409	3	dis	dis	PROPN
ajlm-760	409	4	.	.	PUNCT
ajlm-760	410	1	2017;23(9):1462–1470	2017;23(9):1462–1470	PROPN
ajlm-760	410	2	.	.	PUNCT
ajlm-760	411	1	https://doi.org/10.3201/eid2309.170336	https://doi.org/10.3201/eid2309.170336	PROPN
ajlm-760	411	2	zankari	zankari	PROPN
ajlm-760	411	3	e	e	NOUN
ajlm-760	411	4	,	,	PUNCT
ajlm-760	411	5	hasman	hasman	NOUN
ajlm-760	411	6	h	h	PROPN
ajlm-760	411	7	,	,	PUNCT
ajlm-760	411	8	kaas	kaas	NOUN
ajlm-760	411	9	rs	rs	NOUN
ajlm-760	411	10	,	,	PUNCT
ajlm-760	411	11	et	et	PROPN
ajlm-760	411	12	al	al	PROPN
ajlm-760	411	13	.	.	PUNCT
ajlm-760	412	1	genotyping	genotype	VERB
ajlm-760	412	2	using	use	VERB
ajlm-760	412	3	whole	whole	ADJ
ajlm-760	412	4	-	-	PUNCT
ajlm-760	412	5	genome	genome	NOUN
ajlm-760	412	6	sequencing	sequencing	NOUN
ajlm-760	412	7	is	be	AUX
ajlm-760	412	8	a	a	DET
ajlm-760	412	9	realistic	realistic	ADJ
ajlm-760	412	10	alternative	alternative	NOUN
ajlm-760	412	11	to	to	ADP
ajlm-760	412	12	surveillance	surveillance	NOUN
ajlm-760	412	13	based	base	VERB
ajlm-760	412	14	on	on	ADP
ajlm-760	412	15	phenotypic	phenotypic	ADJ
ajlm-760	412	16	antimicrobial	antimicrobial	ADJ
ajlm-760	412	17	susceptibility	susceptibility	NOUN
ajlm-760	412	18	testing	testing	NOUN
ajlm-760	412	19	.	.	PUNCT
ajlm-760	413	1	j	j	PROPN
ajlm-760	413	2	antimicrob	antimicrob	PROPN
ajlm-760	413	3	chemother	chemother	PROPN
ajlm-760	413	4	.	.	PUNCT
ajlm-760	414	1	2013;68(4):771–777	2013;68(4):771–777	NUM
ajlm-760	414	2	.	.	PUNCT
ajlm-760	415	1	https://doi.org/10.1093/jac/dks496	https://doi.org/10.1093/jac/dks496	PROPN
ajlm-760	415	2	mcdermott	mcdermott	PROPN
ajlm-760	415	3	pf	pf	PROPN
ajlm-760	415	4	,	,	PUNCT
ajlm-760	415	5	tyson	tyson	PROPN
ajlm-760	415	6	gh	gh	PROPN
ajlm-760	415	7	,	,	PUNCT
ajlm-760	415	8	kabera	kabera	PROPN
ajlm-760	415	9	c	c	X
ajlm-760	415	10	,	,	PUNCT
ajlm-760	415	11	et	et	PROPN
ajlm-760	415	12	al	al	PROPN
ajlm-760	415	13	.	.	PUNCT
ajlm-760	416	1	whole	whole	ADJ
ajlm-760	416	2	-	-	PUNCT
ajlm-760	416	3	genome	genome	NOUN
ajlm-760	416	4	sequencing	sequencing	NOUN
ajlm-760	416	5	for	for	ADP
ajlm-760	416	6	detecting	detect	VERB
ajlm-760	416	7	antimicrobial	antimicrobial	ADJ
ajlm-760	416	8	resistance	resistance	NOUN
ajlm-760	416	9	in	in	ADP
ajlm-760	416	10	nontyphoidal	nontyphoidal	ADJ
ajlm-760	416	11	salmonella	salmonella	NOUN
ajlm-760	416	12	.	.	PUNCT
ajlm-760	417	1	antimicrob	antimicrob	PROPN
ajlm-760	417	2	agents	agents	PROPN
ajlm-760	417	3	chemother	chemother	PROPN
ajlm-760	417	4	.	.	PUNCT
ajlm-760	418	1	2016;60(9):5515–5520	2016;60(9):5515–5520	NUM
ajlm-760	418	2	.	.	PUNCT
ajlm-760	419	1	https://doi.org/10.1128/aac.01030-16	https://doi.org/10.1128/aac.01030-16	PROPN
ajlm-760	419	2	zhao	zhao	PROPN
ajlm-760	419	3	s	s	PROPN
ajlm-760	419	4	,	,	PUNCT
ajlm-760	419	5	tyson	tyson	PROPN
ajlm-760	419	6	gh	gh	PROPN
ajlm-760	419	7	,	,	PUNCT
ajlm-760	419	8	chen	chen	PROPN
ajlm-760	419	9	y	y	PROPN
ajlm-760	419	10	,	,	PUNCT
ajlm-760	419	11	et	et	PROPN
ajlm-760	419	12	al	al	PROPN
ajlm-760	419	13	.	.	PUNCT
ajlm-760	420	1	whole	whole	ADJ
ajlm-760	420	2	-	-	PUNCT
ajlm-760	420	3	genome	genome	NOUN
ajlm-760	420	4	sequencing	sequencing	NOUN
ajlm-760	420	5	analysis	analysis	NOUN
ajlm-760	420	6	accurately	accurately	ADV
ajlm-760	420	7	predicts	predict	VERB
ajlm-760	420	8	antimicrobial	antimicrobial	ADJ
ajlm-760	420	9	resistance	resistance	NOUN
ajlm-760	420	10	phenotypes	phenotype	NOUN
ajlm-760	420	11	in	in	ADP
ajlm-760	420	12	campylobacter	campylobacter	NOUN
ajlm-760	420	13	spp	spp	NOUN
ajlm-760	420	14	.	.	PUNCT
ajlm-760	421	1	appl	appl	PROPN
ajlm-760	421	2	environ	environ	PROPN
ajlm-760	421	3	microbiol	microbiol	PROPN
ajlm-760	421	4	.	.	PUNCT
ajlm-760	422	1	2016;82(2):459–466	2016;82(2):459–466	X
ajlm-760	422	2	.	.	X
ajlm-760	422	3	https://doi.org/10.1128/aem.02873-15	https://doi.org/10.1128/aem.02873-15	PROPN
ajlm-760	422	4	stoesser	stoesser	NOUN
ajlm-760	422	5	n	n	NOUN
ajlm-760	422	6	,	,	PUNCT
ajlm-760	422	7	batty	batty	VERB
ajlm-760	422	8	em	em	PRON
ajlm-760	422	9	,	,	PUNCT
ajlm-760	422	10	eyre	eyre	PROPN
ajlm-760	422	11	dw	dw	PROPN
ajlm-760	422	12	,	,	PUNCT
ajlm-760	422	13	et	et	PROPN
ajlm-760	422	14	al	al	PROPN
ajlm-760	422	15	.	.	PROPN
ajlm-760	422	16	predicting	predict	VERB
ajlm-760	422	17	antimicrobial	antimicrobial	ADJ
ajlm-760	422	18	susceptibilities	susceptibility	NOUN
ajlm-760	422	19	for	for	ADP
ajlm-760	422	20	escherichia	escherichia	NOUN
ajlm-760	422	21	coli	coli	NOUN
ajlm-760	422	22	and	and	CCONJ
ajlm-760	422	23	klebsiella	klebsiella	NOUN
ajlm-760	422	24	pneumoniae	pneumoniae	ADJ
ajlm-760	422	25	isolates	isolate	NOUN
ajlm-760	422	26	using	use	VERB
ajlm-760	422	27	whole	whole	ADJ
ajlm-760	422	28	genomic	genomic	ADJ
ajlm-760	422	29	sequence	sequence	NOUN
ajlm-760	422	30	data	datum	NOUN
ajlm-760	422	31	.	.	PUNCT
ajlm-760	423	1	j	j	PROPN
ajlm-760	423	2	antimicrob	antimicrob	PROPN
ajlm-760	423	3	chemother	chemother	PROPN
ajlm-760	423	4	.	.	PUNCT
ajlm-760	424	1	2013;68(10):2234–2244	2013;68(10):2234–2244	X
ajlm-760	424	2	.	.	PUNCT
ajlm-760	425	1	https://doi.org/10.1093/jac/dkt180	https://doi.org/10.1093/jac/dkt180	PROPN
ajlm-760	425	2	mason	mason	PROPN
ajlm-760	425	3	a	a	PROPN
ajlm-760	425	4	,	,	PUNCT
ajlm-760	425	5	foster	foster	ADJ
ajlm-760	425	6	d	d	PROPN
ajlm-760	425	7	,	,	PUNCT
ajlm-760	425	8	bradley	bradley	PROPN
ajlm-760	425	9	p	p	NOUN
ajlm-760	425	10	,	,	PUNCT
ajlm-760	425	11	et	et	PROPN
ajlm-760	425	12	al	al	PROPN
ajlm-760	425	13	.	.	PROPN
ajlm-760	425	14	accuracy	accuracy	NOUN
ajlm-760	425	15	of	of	ADP
ajlm-760	425	16	different	different	ADJ
ajlm-760	425	17	bioinformatics	bioinformatics	NOUN
ajlm-760	425	18	methods	method	NOUN
ajlm-760	425	19	in	in	ADP
ajlm-760	425	20	detecting	detect	VERB
ajlm-760	425	21	antibiotic	antibiotic	ADJ
ajlm-760	425	22	resistance	resistance	NOUN
ajlm-760	425	23	and	and	CCONJ
ajlm-760	425	24	virulence	virulence	NOUN
ajlm-760	425	25	factors	factor	NOUN
ajlm-760	425	26	from	from	ADP
ajlm-760	425	27	staphylococcus	staphylococcus	NOUN
ajlm-760	425	28	aureus	aureus	NOUN
ajlm-760	425	29	whole	whole	ADJ
ajlm-760	425	30	-	-	PUNCT
ajlm-760	425	31	genome	genome	NOUN
ajlm-760	425	32	sequences	sequence	NOUN
ajlm-760	425	33	.	.	PUNCT
ajlm-760	426	1	j	j	PROPN
ajlm-760	426	2	clin	clin	PROPN
ajlm-760	426	3	microbiol	microbiol	PROPN
ajlm-760	426	4	.	.	PUNCT
ajlm-760	427	1	2018;56(9):e01815–17	2018;56(9):e01815–17	NUM
ajlm-760	427	2	.	.	PUNCT
ajlm-760	428	1	https://doi.org/10.1128/jcm.01815-17	https://doi.org/10.1128/jcm.01815-17	PROPN
ajlm-760	428	2	koser	koser	PROPN
ajlm-760	428	3	cu	cu	PROPN
ajlm-760	428	4	,	,	PUNCT
ajlm-760	428	5	ellington	ellington	PROPN
ajlm-760	428	6	mj	mj	PROPN
ajlm-760	428	7	,	,	PUNCT
ajlm-760	428	8	cartwright	cartwright	PROPN
ajlm-760	428	9	ej	ej	PROPN
ajlm-760	428	10	,	,	PUNCT
ajlm-760	428	11	et	et	PROPN
ajlm-760	428	12	al	al	PROPN
ajlm-760	428	13	.	.	PUNCT
ajlm-760	428	14	routine	routine	ADJ
ajlm-760	428	15	use	use	NOUN
ajlm-760	428	16	of	of	ADP
ajlm-760	428	17	microbial	microbial	ADJ
ajlm-760	428	18	whole	whole	ADJ
ajlm-760	428	19	genome	genome	NOUN
ajlm-760	428	20	sequencing	sequencing	NOUN
ajlm-760	428	21	in	in	ADP
ajlm-760	428	22	diagnostic	diagnostic	ADJ
ajlm-760	428	23	and	and	CCONJ
ajlm-760	428	24	public	public	ADJ
ajlm-760	428	25	health	health	NOUN
ajlm-760	428	26	microbiology	microbiology	NOUN
ajlm-760	428	27	.	.	PUNCT
ajlm-760	429	1	plos	plos	PROPN
ajlm-760	429	2	pathog	pathog	PROPN
ajlm-760	429	3	.	.	PUNCT
ajlm-760	430	1	2012;8(8):e1002824	2012;8(8):e1002824	X
ajlm-760	430	2	.	.	PUNCT
ajlm-760	431	1	https://doi.org/10.1371/journal.ppat.1002824	https://doi.org/10.1371/journal.ppat.1002824	PROPN
ajlm-760	431	2	long	long	PROPN
ajlm-760	431	3	sw	sw	PROPN
ajlm-760	431	4	,	,	PUNCT
ajlm-760	431	5	williams	williams	PROPN
ajlm-760	431	6	d	d	PROPN
ajlm-760	431	7	,	,	PUNCT
ajlm-760	431	8	valson	valson	PROPN
ajlm-760	431	9	c	c	PROPN
ajlm-760	431	10	,	,	PUNCT
ajlm-760	431	11	et	et	PROPN
ajlm-760	431	12	al	al	PROPN
ajlm-760	431	13	.	.	PUNCT
ajlm-760	432	1	a	a	DET
ajlm-760	432	2	genomic	genomic	ADJ
ajlm-760	432	3	day	day	NOUN
ajlm-760	432	4	in	in	ADP
ajlm-760	432	5	the	the	DET
ajlm-760	432	6	life	life	NOUN
ajlm-760	432	7	of	of	ADP
ajlm-760	432	8	a	a	DET
ajlm-760	432	9	clinical	clinical	ADJ
ajlm-760	432	10	microbiology	microbiology	NOUN
ajlm-760	432	11	laboratory	laboratory	NOUN
ajlm-760	432	12	.	.	PUNCT
ajlm-760	433	1	j	j	PROPN
ajlm-760	433	2	clin	clin	PROPN
ajlm-760	433	3	microbiol	microbiol	PROPN
ajlm-760	433	4	.	.	PUNCT
ajlm-760	434	1	2013;51(4):1272–1277	2013;51(4):1272–1277	NOUN
ajlm-760	434	2	.	.	PUNCT
ajlm-760	435	1	https://doi.org/10.1128/jcm.03237-12	https://doi.org/10.1128/jcm.03237-12	NOUN
ajlm-760	435	2	bertelli	bertelli	VERB
ajlm-760	435	3	c	c	NOUN
ajlm-760	435	4	,	,	PUNCT
ajlm-760	435	5	greub	greub	PROPN
ajlm-760	435	6	g.	g.	PROPN
ajlm-760	435	7	rapid	rapid	ADJ
ajlm-760	435	8	bacterial	bacterial	ADJ
ajlm-760	435	9	genome	genome	NOUN
ajlm-760	435	10	sequencing	sequencing	NOUN
ajlm-760	435	11	:	:	PUNCT
ajlm-760	435	12	methods	method	NOUN
ajlm-760	435	13	and	and	CCONJ
ajlm-760	435	14	applications	application	NOUN
ajlm-760	435	15	in	in	ADP
ajlm-760	435	16	clinical	clinical	ADJ
ajlm-760	435	17	microbiology	microbiology	NOUN
ajlm-760	435	18	.	.	PUNCT
ajlm-760	436	1	clin	clin	PROPN
ajlm-760	436	2	microbiol	microbiol	PROPN
ajlm-760	436	3	infect	infect	VERB
ajlm-760	436	4	.	.	PUNCT
ajlm-760	437	1	2013;19(9):803–813	2013;19(9):803–813	X
ajlm-760	437	2	.	.	PUNCT
ajlm-760	438	1	https://doi.org/10.1111/1469-0691.12217	https://doi.org/10.1111/1469-0691.12217	PROPN
ajlm-760	438	2	allard	allard	PROPN
ajlm-760	438	3	mw	mw	PROPN
ajlm-760	438	4	.	.	PUNCT
ajlm-760	439	1	the	the	DET
ajlm-760	439	2	future	future	NOUN
ajlm-760	439	3	of	of	ADP
ajlm-760	439	4	whole	whole	ADJ
ajlm-760	439	5	-	-	PUNCT
ajlm-760	439	6	genome	genome	NOUN
ajlm-760	439	7	sequencing	sequencing	NOUN
ajlm-760	439	8	for	for	ADP
ajlm-760	439	9	public	public	ADJ
ajlm-760	439	10	health	health	NOUN
ajlm-760	439	11	and	and	CCONJ
ajlm-760	439	12	the	the	DET
ajlm-760	439	13	clinic	clinic	NOUN
ajlm-760	439	14	.	.	PUNCT
ajlm-760	440	1	j	j	PROPN
ajlm-760	440	2	clin	clin	PROPN
ajlm-760	440	3	microbiol	microbiol	PROPN
ajlm-760	440	4	.	.	PUNCT
ajlm-760	441	1	2016;54(8):1946–1948	2016;54(8):1946–1948	PROPN
ajlm-760	441	2	.	.	PUNCT
ajlm-760	442	1	https://doi.org/10.1128/jcm.01082-16	https://doi.org/10.1128/jcm.01082-16	PROPN
ajlm-760	442	2	oakeson	oakeson	PROPN
ajlm-760	442	3	kf	kf	PROPN
ajlm-760	442	4	,	,	PUNCT
ajlm-760	442	5	wagner	wagner	PROPN
ajlm-760	442	6	jm	jm	PROPN
ajlm-760	442	7	,	,	PUNCT
ajlm-760	442	8	mendenhall	mendenhall	NOUN
ajlm-760	442	9	m	m	PROPN
ajlm-760	442	10	,	,	PUNCT
ajlm-760	442	11	rohrwasser	rohrwasser	NOUN
ajlm-760	442	12	a	a	NOUN
ajlm-760	442	13	,	,	PUNCT
ajlm-760	442	14	atkinson	atkinson	PROPN
ajlm-760	442	15	-	-	PUNCT
ajlm-760	442	16	dunn	dunn	PROPN
ajlm-760	442	17	r.	r.	PROPN
ajlm-760	442	18	bioinformatic	bioinformatic	PROPN
ajlm-760	442	19	analyses	analysis	NOUN
ajlm-760	442	20	of	of	ADP
ajlm-760	442	21	whole	whole	ADJ
ajlm-760	442	22	-	-	PUNCT
ajlm-760	442	23	genome	genome	NOUN
ajlm-760	442	24	sequence	sequence	NOUN
ajlm-760	442	25	data	datum	NOUN
ajlm-760	442	26	in	in	ADP
ajlm-760	442	27	a	a	DET
ajlm-760	442	28	public	public	ADJ
ajlm-760	442	29	health	health	NOUN
ajlm-760	442	30	laboratory	laboratory	NOUN
ajlm-760	442	31	.	.	PUNCT
ajlm-760	443	1	emerg	emerg	PROPN
ajlm-760	443	2	infect	infect	PROPN
ajlm-760	443	3	dis	dis	PROPN
ajlm-760	443	4	.	.	PUNCT
ajlm-760	444	1	2017;23(9):1441–1445	2017;23(9):1441–1445	NOUN
ajlm-760	444	2	.	.	PUNCT
ajlm-760	445	1	https://doi.org/10.3201/eid2309.170416	https://doi.org/10.3201/eid2309.170416	NUM