id	sid	tid	token	lemma	pos
afs-46512	1	1	agricultural	agricultural	ADJ
afs-46512	1	2	and	and	CCONJ
afs-46512	1	3	food	food	NOUN
afs-46512	1	4	science	science	PROPN
afs-46512	1	5	k.	k.	PROPN
afs-46512	1	6	pokharel	pokharel	PROPN
afs-46512	1	7	et	et	PROPN
afs-46512	1	8	al	al	PROPN
afs-46512	1	9	.	.	PROPN
afs-46512	2	1	(	(	PUNCT
afs-46512	2	2	2015	2015	NUM
afs-46512	2	3	)	)	PUNCT
afs-46512	2	4	24	24	NUM
afs-46512	2	5	:	:	PUNCT
afs-46512	2	6	1–9	1–9	NUM
afs-46512	2	7	1	1	NUM
afs-46512	2	8	transcriptome	transcriptome	ADJ
afs-46512	2	9	profiling	profiling	NOUN
afs-46512	2	10	of	of	ADP
afs-46512	2	11	finnsheep	finnsheep	ADJ
afs-46512	2	12	ovaries	ovary	NOUN
afs-46512	2	13	during	during	ADP
afs-46512	2	14	out	out	ADV
afs-46512	2	15	-	-	PUNCT
afs-46512	2	16	of	of	ADP
afs-46512	2	17	-	-	PUNCT
afs-46512	2	18	season	season	NOUN
afs-46512	2	19	breeding	breeding	NOUN
afs-46512	2	20	period	period	NOUN
afs-46512	2	21	kisun	kisun	PROPN
afs-46512	2	22	pokharel1,2	pokharel1,2	PROPN
afs-46512	2	23	,	,	PUNCT
afs-46512	2	24	jaana	jaana	PROPN
afs-46512	2	25	peippo1	peippo1	PROPN
afs-46512	2	26	,	,	PUNCT
afs-46512	2	27	göran	göran	PROPN
afs-46512	2	28	andersson3	andersson3	PROPN
afs-46512	2	29	,	,	PUNCT
afs-46512	2	30	meng	meng	PROPN
afs-46512	2	31	-	-	PUNCT
afs-46512	2	32	hua	hua	PROPN
afs-46512	2	33	li4	li4	VERB
afs-46512	2	34	and	and	CCONJ
afs-46512	2	35	juha	juha	PROPN
afs-46512	2	36	kantanen1,2	kantanen1,2	PROPN
afs-46512	2	37	1green	1green	NUM
afs-46512	2	38	technology	technology	NOUN
afs-46512	2	39	,	,	PUNCT
afs-46512	2	40	natural	natural	ADJ
afs-46512	2	41	resources	resource	NOUN
afs-46512	2	42	institute	institute	PROPN
afs-46512	2	43	finland	finland	PROPN
afs-46512	2	44	(	(	PUNCT
afs-46512	2	45	luke	luke	PROPN
afs-46512	2	46	)	)	PUNCT
afs-46512	2	47	,	,	PUNCT
afs-46512	2	48	myllytie	myllytie	NOUN
afs-46512	2	49	1	1	NUM
afs-46512	2	50	,	,	PUNCT
afs-46512	2	51	fi-31600	fi-31600	PROPN
afs-46512	2	52	jokioinen	jokioinen	PROPN
afs-46512	2	53	,	,	PUNCT
afs-46512	2	54	finland	finland	PROPN
afs-46512	2	55	2department	2department	NUM
afs-46512	2	56	of	of	ADP
afs-46512	2	57	biology	biology	NOUN
afs-46512	2	58	,	,	PUNCT
afs-46512	2	59	university	university	NOUN
afs-46512	2	60	of	of	ADP
afs-46512	2	61	eastern	eastern	PROPN
afs-46512	2	62	finland	finland	PROPN
afs-46512	2	63	,	,	PUNCT
afs-46512	2	64	yliopistonranta	yliopistonranta	NOUN
afs-46512	2	65	1	1	NUM
afs-46512	2	66	e	e	NOUN
afs-46512	2	67	,	,	PUNCT
afs-46512	2	68	fi-70211	fi-70211	PROPN
afs-46512	2	69	kuopio	kuopio	PROPN
afs-46512	2	70	,	,	PUNCT
afs-46512	2	71	finland	finland	PROPN
afs-46512	2	72	3department	3department	NUM
afs-46512	2	73	of	of	ADP
afs-46512	2	74	animal	animal	NOUN
afs-46512	2	75	breeding	breeding	NOUN
afs-46512	2	76	and	and	CCONJ
afs-46512	2	77	genetics	genetic	NOUN
afs-46512	2	78	,	,	PUNCT
afs-46512	2	79	swedish	swedish	ADJ
afs-46512	2	80	university	university	PROPN
afs-46512	2	81	of	of	ADP
afs-46512	2	82	agricultural	agricultural	ADJ
afs-46512	2	83	sciences	science	NOUN
afs-46512	2	84	,	,	PUNCT
afs-46512	2	85	gerda	gerda	PROPN
afs-46512	2	86	ulls	ull	VERB
afs-46512	2	87	väg	väg	PROPN
afs-46512	2	88	26	26	NUM
afs-46512	2	89	,	,	PUNCT
afs-46512	2	90	75007	75007	NUM
afs-46512	2	91	uppsala	uppsala	NOUN
afs-46512	2	92	,	,	PUNCT
afs-46512	2	93	sweden	sweden	PROPN
afs-46512	2	94	4cas	4cas	NUM
afs-46512	2	95	key	key	ADJ
afs-46512	2	96	laboratory	laboratory	NOUN
afs-46512	2	97	of	of	ADP
afs-46512	2	98	animal	animal	NOUN
afs-46512	2	99	ecology	ecology	NOUN
afs-46512	2	100	and	and	CCONJ
afs-46512	2	101	conservation	conservation	NOUN
afs-46512	2	102	biology	biology	NOUN
afs-46512	2	103	,	,	PUNCT
afs-46512	2	104	institute	institute	NOUN
afs-46512	2	105	of	of	ADP
afs-46512	2	106	zoology	zoology	NOUN
afs-46512	2	107	,	,	PUNCT
afs-46512	2	108	chinese	chinese	PROPN
afs-46512	2	109	academy	academy	PROPN
afs-46512	2	110	of	of	ADP
afs-46512	2	111	sciences	sciences	PROPN
afs-46512	2	112	(	(	PUNCT
afs-46512	2	113	cas	cas	PROPN
afs-46512	2	114	)	)	PUNCT
afs-46512	2	115	,	,	PUNCT
afs-46512	2	116	beichen	beichen	VERB
afs-46512	2	117	west	west	PROPN
afs-46512	2	118	road	road	PROPN
afs-46512	3	1	no	no	INTJ
afs-46512	3	2	.	.	PUNCT
afs-46512	4	1	1–5	1–5	NUM
afs-46512	4	2	,	,	PUNCT
afs-46512	4	3	chaoyang	chaoyang	PROPN
afs-46512	4	4	district	district	PROPN
afs-46512	4	5	,	,	PUNCT
afs-46512	4	6	100101	100101	NUM
afs-46512	4	7	beijing	beijing	PROPN
afs-46512	4	8	,	,	PUNCT
afs-46512	4	9	china	china	PROPN
afs-46512	4	10	email	email	NOUN
afs-46512	4	11	:	:	PUNCT
afs-46512	4	12	menghua.li@ioz.ac.cn	menghua.li@ioz.ac.cn	NUM
afs-46512	4	13	finnsheep	finnsheep	NOUN
afs-46512	4	14	is	be	AUX
afs-46512	4	15	one	one	NUM
afs-46512	4	16	of	of	ADP
afs-46512	4	17	the	the	DET
afs-46512	4	18	most	most	ADV
afs-46512	4	19	prolific	prolific	ADJ
afs-46512	4	20	sheep	sheep	NOUN
afs-46512	4	21	breeds	breed	NOUN
afs-46512	4	22	in	in	ADP
afs-46512	4	23	the	the	DET
afs-46512	4	24	world	world	NOUN
afs-46512	4	25	.	.	PUNCT
afs-46512	5	1	we	we	PRON
afs-46512	5	2	sequenced	sequence	VERB
afs-46512	5	3	rna	rna	NOUN
afs-46512	5	4	-	-	PUNCT
afs-46512	5	5	seq	seq	NOUN
afs-46512	5	6	libraries	library	NOUN
afs-46512	5	7	from	from	ADP
afs-46512	5	8	the	the	DET
afs-46512	5	9	ovaries	ovary	NOUN
afs-46512	5	10	of	of	ADP
afs-46512	5	11	finnsheep	finnsheep	ADJ
afs-46512	5	12	ewes	ewe	NOUN
afs-46512	5	13	collected	collect	VERB
afs-46512	5	14	during	during	ADP
afs-46512	5	15	out	out	ADP
afs-46512	5	16	of	of	ADP
afs-46512	5	17	season	season	NOUN
afs-46512	5	18	breeding	breeding	NOUN
afs-46512	5	19	period	period	NOUN
afs-46512	5	20	at	at	ADP
afs-46512	5	21	about	about	ADP
afs-46512	5	22	30x	30x	NOUN
afs-46512	5	23	sequence	sequence	NOUN
afs-46512	5	24	coverage	coverage	NOUN
afs-46512	5	25	.	.	PUNCT
afs-46512	6	1	a	a	DET
afs-46512	6	2	total	total	NOUN
afs-46512	6	3	of	of	ADP
afs-46512	6	4	86966348	86966348	NUM
afs-46512	6	5	and	and	CCONJ
afs-46512	6	6	105587994	105587994	NUM
afs-46512	6	7	reads	read	VERB
afs-46512	6	8	from	from	ADP
afs-46512	6	9	two	two	NUM
afs-46512	6	10	samples	sample	NOUN
afs-46512	6	11	were	be	AUX
afs-46512	6	12	mapped	map	VERB
afs-46512	6	13	against	against	ADP
afs-46512	6	14	latest	late	ADJ
afs-46512	6	15	available	available	ADJ
afs-46512	6	16	ovine	ovine	ADJ
afs-46512	6	17	reference	reference	NOUN
afs-46512	6	18	genome	genome	NOUN
afs-46512	6	19	(	(	PUNCT
afs-46512	6	20	oarv3.1	oarv3.1	PROPN
afs-46512	6	21	)	)	PUNCT
afs-46512	6	22	.	.	PUNCT
afs-46512	7	1	the	the	DET
afs-46512	7	2	transcriptome	transcriptome	PROPN
afs-46512	7	3	assembly	assembly	NOUN
afs-46512	7	4	revealed	reveal	VERB
afs-46512	7	5	14870	14870	NUM
afs-46512	7	6	known	know	VERB
afs-46512	7	7	ovine	ovine	ADJ
afs-46512	7	8	genes	gene	NOUN
afs-46512	7	9	,	,	PUNCT
afs-46512	7	10	including	include	VERB
afs-46512	7	11	the	the	DET
afs-46512	7	12	15	15	NUM
afs-46512	7	13	candidate	candidate	NOUN
afs-46512	7	14	genes	gene	NOUN
afs-46512	7	15	for	for	ADP
afs-46512	7	16	fertility	fertility	NOUN
afs-46512	7	17	and	and	CCONJ
afs-46512	7	18	out	out	ADP
afs-46512	7	19	-	-	PUNCT
afs-46512	7	20	of	of	ADP
afs-46512	7	21	-	-	PUNCT
afs-46512	7	22	season	season	NOUN
afs-46512	7	23	breeding	breeding	NOUN
afs-46512	7	24	.	.	PUNCT
afs-46512	8	1	in	in	ADP
afs-46512	8	2	this	this	DET
afs-46512	8	3	study	study	NOUN
afs-46512	8	4	we	we	PRON
afs-46512	8	5	successfully	successfully	ADV
afs-46512	8	6	used	use	VERB
afs-46512	8	7	our	our	PRON
afs-46512	8	8	bioinformatics	bioinformatics	NOUN
afs-46512	8	9	pipeline	pipeline	NOUN
afs-46512	8	10	to	to	PART
afs-46512	8	11	assemble	assemble	VERB
afs-46512	8	12	the	the	DET
afs-46512	8	13	first	first	ADJ
afs-46512	8	14	ovarian	ovarian	ADJ
afs-46512	8	15	transcriptome	transcriptome	NOUN
afs-46512	8	16	of	of	ADP
afs-46512	8	17	finnsheep	finnsheep	NOUN
afs-46512	8	18	.	.	PUNCT
afs-46512	9	1	key	key	ADJ
afs-46512	9	2	words	word	NOUN
afs-46512	9	3	:	:	PUNCT
afs-46512	9	4	bioinformatics	bioinformatics	NOUN
afs-46512	9	5	pipeline	pipeline	NOUN
afs-46512	9	6	,	,	PUNCT
afs-46512	9	7	mrna	mrna	PROPN
afs-46512	9	8	,	,	PUNCT
afs-46512	9	9	prolific	prolific	ADJ
afs-46512	9	10	sheep	sheep	NOUN
afs-46512	9	11	breed	breed	NOUN
afs-46512	9	12	introduction	introduction	NOUN
afs-46512	9	13	the	the	DET
afs-46512	9	14	native	native	ADJ
afs-46512	9	15	finnsheep	finnsheep	PROPN
afs-46512	9	16	breed	breed	NOUN
afs-46512	9	17	demonstrates	demonstrate	VERB
afs-46512	9	18	several	several	ADJ
afs-46512	9	19	economically	economically	ADV
afs-46512	9	20	important	important	ADJ
afs-46512	9	21	and	and	CCONJ
afs-46512	9	22	physiologically	physiologically	ADV
afs-46512	9	23	interesting	interesting	ADJ
afs-46512	9	24	traits	trait	NOUN
afs-46512	9	25	such	such	ADJ
afs-46512	9	26	as	as	ADP
afs-46512	9	27	large	large	ADJ
afs-46512	9	28	litter	litter	NOUN
afs-46512	9	29	size	size	NOUN
afs-46512	9	30	(	(	PUNCT
afs-46512	9	31	i.e.	i.e.	X
afs-46512	9	32	multiple	multiple	ADJ
afs-46512	9	33	births	birth	NOUN
afs-46512	9	34	)	)	PUNCT
afs-46512	9	35	and	and	CCONJ
afs-46512	9	36	out	out	ADV
afs-46512	9	37	-	-	PUNCT
afs-46512	9	38	of	of	ADP
afs-46512	9	39	-	-	PUNCT
afs-46512	9	40	season	season	NOUN
afs-46512	9	41	breeding	breeding	NOUN
afs-46512	9	42	and	and	CCONJ
afs-46512	9	43	,	,	PUNCT
afs-46512	9	44	thus	thus	ADV
afs-46512	9	45	,	,	PUNCT
afs-46512	9	46	has	have	AUX
afs-46512	9	47	been	be	AUX
afs-46512	9	48	exported	export	VERB
afs-46512	9	49	to	to	ADP
afs-46512	9	50	more	more	ADJ
afs-46512	9	51	than	than	ADP
afs-46512	9	52	40	40	NUM
afs-46512	9	53	countries	country	NOUN
afs-46512	9	54	(	(	PUNCT
afs-46512	9	55	maijala	maijala	NOUN
afs-46512	9	56	1988	1988	NUM
afs-46512	9	57	)	)	PUNCT
afs-46512	9	58	.	.	PUNCT
afs-46512	10	1	the	the	DET
afs-46512	10	2	large	large	ADJ
afs-46512	10	3	litter	litter	NOUN
afs-46512	10	4	size	size	NOUN
afs-46512	10	5	in	in	ADP
afs-46512	10	6	finnsheep	finnsheep	NOUN
afs-46512	10	7	(	(	PUNCT
afs-46512	10	8	on	on	ADP
afs-46512	10	9	average	average	ADJ
afs-46512	10	10	2.4–2.9	2.4–2.9	NUM
afs-46512	10	11	lambs	lamb	NOUN
afs-46512	10	12	)	)	PUNCT
afs-46512	10	13	is	be	AUX
afs-46512	10	14	most	most	ADV
afs-46512	10	15	likely	likely	ADV
afs-46512	10	16	associated	associate	VERB
afs-46512	10	17	with	with	ADP
afs-46512	10	18	increased	increase	VERB
afs-46512	10	19	ovulation	ovulation	NOUN
afs-46512	10	20	rate	rate	NOUN
afs-46512	10	21	during	during	ADP
afs-46512	10	22	the	the	DET
afs-46512	10	23	oestrus	oestrus	NOUN
afs-46512	10	24	cycle	cycle	NOUN
afs-46512	10	25	and	and	CCONJ
afs-46512	10	26	successful	successful	ADJ
afs-46512	10	27	subsequent	subsequent	ADJ
afs-46512	10	28	embryonic	embryonic	ADJ
afs-46512	10	29	and	and	CCONJ
afs-46512	10	30	foetal	foetal	ADJ
afs-46512	10	31	development	development	NOUN
afs-46512	10	32	(	(	PUNCT
afs-46512	10	33	maijala	maijala	NOUN
afs-46512	10	34	and	and	CCONJ
afs-46512	10	35	österberg	österberg	PROPN
afs-46512	10	36	1977	1977	NUM
afs-46512	10	37	,	,	PUNCT
afs-46512	10	38	fahmy	fahmy	PROPN
afs-46512	10	39	and	and	CCONJ
afs-46512	10	40	dufour	dufour	PROPN
afs-46512	10	41	1988	1988	NUM
afs-46512	10	42	,	,	PUNCT
afs-46512	10	43	li	li	PROPN
afs-46512	10	44	et	et	PROPN
afs-46512	10	45	al	al	PROPN
afs-46512	10	46	.	.	PROPN
afs-46512	10	47	2011	2011	NUM
afs-46512	10	48	,	,	PUNCT
afs-46512	10	49	vinet	vinet	PROPN
afs-46512	10	50	et	et	PROPN
afs-46512	10	51	al	al	PROPN
afs-46512	10	52	.	.	PROPN
afs-46512	10	53	2012	2012	NUM
afs-46512	10	54	)	)	PUNCT
afs-46512	10	55	.	.	PUNCT
afs-46512	11	1	mutations	mutation	NOUN
afs-46512	11	2	in	in	ADP
afs-46512	11	3	functional	functional	ADJ
afs-46512	11	4	genes	gene	NOUN
afs-46512	11	5	such	such	ADJ
afs-46512	11	6	as	as	ADP
afs-46512	11	7	bone	bone	NOUN
afs-46512	11	8	morphogenetic	morphogenetic	ADJ
afs-46512	11	9	protein	protein	NOUN
afs-46512	11	10	15	15	NUM
afs-46512	11	11	(	(	PUNCT
afs-46512	11	12	e.g.	e.g.	ADV
afs-46512	11	13	bmp15	bmp15	PROPN
afs-46512	11	14	on	on	ADP
afs-46512	11	15	oarx	oarx	NOUN
afs-46512	11	16	)	)	PUNCT
afs-46512	11	17	,	,	PUNCT
afs-46512	11	18	bone	bone	NOUN
afs-46512	11	19	morphogenetic	morphogenetic	ADJ
afs-46512	11	20	protein	protein	NOUN
afs-46512	11	21	receptor	receptor	NOUN
afs-46512	11	22	,	,	PUNCT
afs-46512	11	23	type	type	NOUN
afs-46512	11	24	1b	1b	NUM
afs-46512	11	25	(	(	PUNCT
afs-46512	11	26	bmpr1b	bmpr1b	X
afs-46512	11	27	on	on	ADP
afs-46512	11	28	oar6	oar6	NOUN
afs-46512	11	29	)	)	PUNCT
afs-46512	11	30	and	and	CCONJ
afs-46512	11	31	growth	growth	NOUN
afs-46512	11	32	differentiation	differentiation	NOUN
afs-46512	11	33	factor	factor	NOUN
afs-46512	11	34	9	9	NUM
afs-46512	11	35	(	(	PUNCT
afs-46512	11	36	gdf9	gdf9	VERB
afs-46512	11	37	on	on	ADP
afs-46512	11	38	oar5	oar5	PROPN
afs-46512	11	39	)	)	PUNCT
afs-46512	11	40	have	have	AUX
afs-46512	11	41	been	be	AUX
afs-46512	11	42	shown	show	VERB
afs-46512	11	43	to	to	PART
afs-46512	11	44	account	account	VERB
afs-46512	11	45	for	for	ADP
afs-46512	11	46	the	the	DET
afs-46512	11	47	increase	increase	NOUN
afs-46512	11	48	in	in	ADP
afs-46512	11	49	ovulation	ovulation	NOUN
afs-46512	11	50	rate	rate	NOUN
afs-46512	11	51	and	and	CCONJ
afs-46512	11	52	litter	litter	NOUN
afs-46512	11	53	size	size	NOUN
afs-46512	11	54	in	in	ADP
afs-46512	11	55	sheep	sheep	NOUN
afs-46512	11	56	(	(	PUNCT
afs-46512	11	57	mcnatty	mcnatty	NOUN
afs-46512	11	58	et	et	PROPN
afs-46512	11	59	al	al	PROPN
afs-46512	11	60	.	.	PROPN
afs-46512	11	61	2005	2005	NUM
afs-46512	11	62	,	,	PUNCT
afs-46512	11	63	vinet	vinet	PROPN
afs-46512	11	64	et	et	PROPN
afs-46512	11	65	al	al	PROPN
afs-46512	11	66	.	.	PROPN
afs-46512	11	67	2012	2012	NUM
afs-46512	11	68	,	,	PUNCT
afs-46512	11	69	mullen	mullen	PROPN
afs-46512	11	70	et	et	PROPN
afs-46512	11	71	al	al	PROPN
afs-46512	11	72	.	.	PROPN
afs-46512	11	73	2013	2013	NUM
afs-46512	11	74	,	,	PUNCT
afs-46512	11	75	våge	våge	VERB
afs-46512	11	76	et	et	PROPN
afs-46512	11	77	al	al	PROPN
afs-46512	11	78	.	.	PROPN
afs-46512	11	79	2013	2013	NUM
afs-46512	11	80	)	)	PUNCT
afs-46512	11	81	.	.	PUNCT
afs-46512	12	1	the	the	DET
afs-46512	12	2	majority	majority	NOUN
afs-46512	12	3	of	of	ADP
afs-46512	12	4	finnsheep	finnsheep	ADJ
afs-46512	12	5	ewes	ewe	NOUN
afs-46512	12	6	also	also	ADV
afs-46512	12	7	have	have	VERB
afs-46512	12	8	an	an	DET
afs-46512	12	9	exceptional	exceptional	ADJ
afs-46512	12	10	ability	ability	NOUN
afs-46512	12	11	to	to	PART
afs-46512	12	12	breed	breed	VERB
afs-46512	12	13	out	out	ADP
afs-46512	12	14	-	-	PUNCT
afs-46512	12	15	of	of	ADP
afs-46512	12	16	-	-	PUNCT
afs-46512	12	17	season	season	NOUN
afs-46512	12	18	,	,	PUNCT
afs-46512	12	19	i.e.	i.e.	X
afs-46512	12	20	they	they	PRON
afs-46512	12	21	can	can	AUX
afs-46512	12	22	conceive	conceive	VERB
afs-46512	12	23	all	all	DET
afs-46512	12	24	the	the	DET
afs-46512	12	25	year	year	NOUN
afs-46512	12	26	around	around	ADV
afs-46512	12	27	instead	instead	ADV
afs-46512	12	28	of	of	ADP
afs-46512	12	29	only	only	ADV
afs-46512	12	30	once	once	ADV
afs-46512	12	31	in	in	ADP
afs-46512	12	32	autumn	autumn	NOUN
afs-46512	12	33	,	,	PUNCT
afs-46512	12	34	typical	typical	ADJ
afs-46512	12	35	for	for	ADP
afs-46512	12	36	most	most	ADJ
afs-46512	12	37	breeds	breed	NOUN
afs-46512	12	38	,	,	PUNCT
afs-46512	12	39	allowing	allow	VERB
afs-46512	12	40	year	year	NOUN
afs-46512	12	41	-	-	PUNCT
afs-46512	12	42	round	round	NOUN
afs-46512	12	43	breeding	breeding	NOUN
afs-46512	12	44	(	(	PUNCT
afs-46512	12	45	sormunencristian	sormunencristian	ADJ
afs-46512	12	46	and	and	CCONJ
afs-46512	12	47	suvela	suvela	VERB
afs-46512	12	48	1999	1999	NUM
afs-46512	12	49	)	)	PUNCT
afs-46512	12	50	.	.	PUNCT
afs-46512	13	1	functional	functional	ADJ
afs-46512	13	2	genes	gene	NOUN
afs-46512	13	3	accounting	account	VERB
afs-46512	13	4	for	for	ADP
afs-46512	13	5	the	the	DET
afs-46512	13	6	off	off	ADJ
afs-46512	13	7	-	-	PUNCT
afs-46512	13	8	season	season	NOUN
afs-46512	13	9	oestrus	oestrus	NOUN
afs-46512	13	10	in	in	ADP
afs-46512	13	11	finnsheep	finnsheep	NOUN
afs-46512	13	12	have	have	AUX
afs-46512	13	13	not	not	PART
afs-46512	13	14	yet	yet	ADV
afs-46512	13	15	been	be	AUX
afs-46512	13	16	identified	identify	VERB
afs-46512	13	17	although	although	SCONJ
afs-46512	13	18	a	a	DET
afs-46512	13	19	few	few	ADJ
afs-46512	13	20	candidate	candidate	NOUN
afs-46512	13	21	genes	gene	NOUN
afs-46512	13	22	for	for	ADP
afs-46512	13	23	the	the	DET
afs-46512	13	24	trait	trait	NOUN
afs-46512	13	25	have	have	AUX
afs-46512	13	26	been	be	AUX
afs-46512	13	27	found	find	VERB
afs-46512	13	28	in	in	ADP
afs-46512	13	29	some	some	DET
afs-46512	13	30	other	other	ADJ
afs-46512	13	31	prolific	prolific	ADJ
afs-46512	13	32	sheep	sheep	NOUN
afs-46512	13	33	breeds	breed	NOUN
afs-46512	13	34	.	.	PUNCT
afs-46512	14	1	for	for	ADP
afs-46512	14	2	example	example	NOUN
afs-46512	14	3	,	,	PUNCT
afs-46512	14	4	chen	chen	PROPN
afs-46512	14	5	et	et	PROPN
afs-46512	14	6	al	al	PROPN
afs-46512	14	7	.	.	PROPN
afs-46512	14	8	(	(	PUNCT
afs-46512	14	9	2012	2012	NUM
afs-46512	14	10	)	)	PUNCT
afs-46512	14	11	identified	identify	VERB
afs-46512	14	12	a	a	DET
afs-46512	14	13	set	set	NOUN
afs-46512	14	14	of	of	ADP
afs-46512	14	15	candidate	candidate	NOUN
afs-46512	14	16	genes	gene	NOUN
afs-46512	14	17	for	for	ADP
afs-46512	14	18	out	out	ADV
afs-46512	14	19	-	-	PUNCT
afs-46512	14	20	of	of	ADP
afs-46512	14	21	-	-	PUNCT
afs-46512	14	22	season	season	NOUN
afs-46512	14	23	breeding	breeding	NOUN
afs-46512	14	24	in	in	ADP
afs-46512	14	25	the	the	DET
afs-46512	14	26	hu	hu	PROPN
afs-46512	14	27	sheep	sheep	PROPN
afs-46512	14	28	(	(	PUNCT
afs-46512	14	29	an	an	DET
afs-46512	14	30	indigenous	indigenous	ADJ
afs-46512	14	31	chinese	chinese	ADJ
afs-46512	14	32	breed	breed	NOUN
afs-46512	14	33	)	)	PUNCT
afs-46512	14	34	,	,	PUNCT
afs-46512	14	35	such	such	ADJ
afs-46512	14	36	as	as	ADP
afs-46512	14	37	neurotrophic	neurotrophic	ADJ
afs-46512	14	38	tyrosine	tyrosine	NOUN
afs-46512	14	39	receptor	receptor	NOUN
afs-46512	14	40	type	type	NOUN
afs-46512	14	41	2	2	NUM
afs-46512	14	42	(	(	PUNCT
afs-46512	14	43	ntrk2	ntrk2	PROPN
afs-46512	14	44	)	)	PUNCT
afs-46512	14	45	,	,	PUNCT
afs-46512	14	46	nidogen	nidogen	ADV
afs-46512	14	47	1	1	NUM
afs-46512	14	48	(	(	PUNCT
afs-46512	14	49	nid1	nid1	ADV
afs-46512	14	50	)	)	PUNCT
afs-46512	14	51	and	and	CCONJ
afs-46512	14	52	serine	serine	NOUN
afs-46512	14	53	protease	protease	NOUN
afs-46512	14	54	inhibitor	inhibitor	NOUN
afs-46512	14	55	clade	clade	NOUN
afs-46512	14	56	e	e	NOUN
afs-46512	14	57	member	member	NOUN
afs-46512	14	58	2	2	NUM
afs-46512	14	59	(	(	PUNCT
afs-46512	14	60	serpine2	serpine2	PROPN
afs-46512	14	61	)	)	PUNCT
afs-46512	14	62	.	.	PUNCT
afs-46512	15	1	moreover	moreover	ADV
afs-46512	15	2	,	,	PUNCT
afs-46512	15	3	notter	notter	PROPN
afs-46512	15	4	et	et	PROPN
afs-46512	15	5	al	al	PROPN
afs-46512	15	6	.	.	PROPN
afs-46512	15	7	(	(	PUNCT
afs-46512	15	8	2003	2003	NUM
afs-46512	15	9	)	)	PUNCT
afs-46512	15	10	and	and	CCONJ
afs-46512	15	11	mateescu	mateescu	NOUN
afs-46512	15	12	and	and	CCONJ
afs-46512	15	13	thonney	thonney	NOUN
afs-46512	15	14	(	(	PUNCT
afs-46512	15	15	2010	2010	NUM
afs-46512	15	16	)	)	PUNCT
afs-46512	15	17	found	find	VERB
afs-46512	15	18	another	another	DET
afs-46512	15	19	candidate	candidate	NOUN
afs-46512	15	20	gene	gene	NOUN
afs-46512	15	21	,	,	PUNCT
afs-46512	15	22	melatonin	melatonin	PROPN
afs-46512	15	23	1a	1a	PROPN
afs-46512	15	24	receptor	receptor	NOUN
afs-46512	15	25	(	(	PUNCT
afs-46512	15	26	mtnr1a	mtnr1a	NOUN
afs-46512	15	27	)	)	PUNCT
afs-46512	15	28	,	,	PUNCT
afs-46512	15	29	for	for	ADP
afs-46512	15	30	out	out	ADV
afs-46512	15	31	-	-	PUNCT
afs-46512	15	32	of	of	ADP
afs-46512	15	33	-	-	PUNCT
afs-46512	15	34	season	season	NOUN
afs-46512	15	35	breeding	breeding	NOUN
afs-46512	15	36	in	in	ADP
afs-46512	15	37	the	the	DET
afs-46512	15	38	dorset	dorset	NOUN
afs-46512	15	39	sheep	sheep	NOUN
afs-46512	15	40	.	.	PUNCT
afs-46512	16	1	earlier	early	ADJ
afs-46512	16	2	investigations	investigation	NOUN
afs-46512	16	3	showed	show	VERB
afs-46512	16	4	that	that	SCONJ
afs-46512	16	5	functional	functional	ADJ
afs-46512	16	6	genomics	genomic	NOUN
afs-46512	16	7	elements	element	NOUN
afs-46512	16	8	underlying	underlie	VERB
afs-46512	16	9	complex	complex	ADJ
afs-46512	16	10	traits	trait	NOUN
afs-46512	16	11	can	can	AUX
afs-46512	16	12	be	be	AUX
afs-46512	16	13	efficiently	efficiently	ADV
afs-46512	16	14	explored	explore	VERB
afs-46512	16	15	by	by	ADP
afs-46512	16	16	whole	whole	ADJ
afs-46512	16	17	-	-	PUNCT
afs-46512	16	18	transcriptome	transcriptome	NOUN
afs-46512	16	19	analysis	analysis	NOUN
afs-46512	16	20	,	,	PUNCT
afs-46512	16	21	using	use	VERB
afs-46512	16	22	next	next	ADJ
afs-46512	16	23	-	-	PUNCT
afs-46512	16	24	generation	generation	NOUN
afs-46512	16	25	sequencing	sequence	VERB
afs-46512	16	26	technologies	technology	NOUN
afs-46512	16	27	(	(	PUNCT
afs-46512	16	28	twine	twine	NOUN
afs-46512	16	29	et	et	NOUN
afs-46512	16	30	al	al	PROPN
afs-46512	16	31	.	.	PROPN
afs-46512	16	32	2011	2011	NUM
afs-46512	16	33	,	,	PUNCT
afs-46512	16	34	husseneder	husseneder	PROPN
afs-46512	16	35	et	et	PROPN
afs-46512	16	36	al	al	PROPN
afs-46512	16	37	.	.	PROPN
afs-46512	16	38	2012	2012	NUM
afs-46512	16	39	,	,	PUNCT
afs-46512	16	40	ramayo	ramayo	NOUN
afs-46512	16	41	-	-	PUNCT
afs-46512	16	42	caldas	caldas	PROPN
afs-46512	16	43	et	et	PROPN
afs-46512	16	44	al	al	PROPN
afs-46512	16	45	.	.	PROPN
afs-46512	16	46	2012	2012	NUM
afs-46512	16	47	,	,	PUNCT
afs-46512	17	1	xu	xu	PROPN
afs-46512	17	2	et	et	PROPN
afs-46512	17	3	al	al	PROPN
afs-46512	17	4	.	.	PROPN
afs-46512	17	5	2013	2013	NUM
afs-46512	17	6	)	)	PUNCT
afs-46512	17	7	.	.	PUNCT
afs-46512	18	1	we	we	PRON
afs-46512	18	2	have	have	AUX
afs-46512	18	3	commenced	commence	VERB
afs-46512	18	4	a	a	DET
afs-46512	18	5	sheep	sheep	NOUN
afs-46512	18	6	fertility	fertility	NOUN
afs-46512	18	7	study	study	NOUN
afs-46512	18	8	which	which	PRON
afs-46512	18	9	is	be	AUX
afs-46512	18	10	based	base	VERB
afs-46512	18	11	on	on	ADP
afs-46512	18	12	whole	whole	ADJ
afs-46512	18	13	-	-	PUNCT
afs-46512	18	14	genome	genome	NOUN
afs-46512	18	15	transcriptome	transcriptome	NOUN
afs-46512	18	16	and	and	CCONJ
afs-46512	18	17	single	single	ADJ
afs-46512	18	18	nucleotide	nucleotide	ADJ
afs-46512	18	19	polymorphism	polymorphism	NOUN
afs-46512	18	20	(	(	PUNCT
afs-46512	18	21	snp	snp	ADJ
afs-46512	18	22	)	)	PUNCT
afs-46512	18	23	marker	marker	NOUN
afs-46512	18	24	analyses	analysis	NOUN
afs-46512	18	25	.	.	PUNCT
afs-46512	19	1	in	in	ADP
afs-46512	19	2	the	the	DET
afs-46512	19	3	present	present	ADJ
afs-46512	19	4	study	study	NOUN
afs-46512	19	5	,	,	PUNCT
afs-46512	19	6	we	we	PRON
afs-46512	19	7	present	present	VERB
afs-46512	19	8	our	our	PRON
afs-46512	19	9	first	first	ADJ
afs-46512	19	10	results	result	NOUN
afs-46512	19	11	on	on	ADP
afs-46512	19	12	transcriptome	transcriptome	ADJ
afs-46512	19	13	profiling	profiling	NOUN
afs-46512	19	14	of	of	ADP
afs-46512	19	15	finnsheep	finnsheep	ADJ
afs-46512	19	16	ovaries	ovary	NOUN
afs-46512	19	17	and	and	CCONJ
afs-46512	19	18	test	test	VERB
afs-46512	19	19	the	the	DET
afs-46512	19	20	applicability	applicability	NOUN
afs-46512	19	21	of	of	ADP
afs-46512	19	22	experimental	experimental	ADJ
afs-46512	19	23	design	design	NOUN
afs-46512	19	24	and	and	CCONJ
afs-46512	19	25	methods	method	NOUN
afs-46512	19	26	prior	prior	ADV
afs-46512	19	27	to	to	ADP
afs-46512	19	28	analyses	analysis	NOUN
afs-46512	19	29	of	of	ADP
afs-46512	19	30	a	a	DET
afs-46512	19	31	larger	large	ADJ
afs-46512	19	32	,	,	PUNCT
afs-46512	19	33	main	main	ADJ
afs-46512	19	34	data	datum	NOUN
afs-46512	19	35	set	set	NOUN
afs-46512	19	36	.	.	PUNCT
afs-46512	20	1	the	the	DET
afs-46512	20	2	ovaries	ovary	NOUN
afs-46512	20	3	were	be	AUX
afs-46512	20	4	collected	collect	VERB
afs-46512	20	5	during	during	ADP
afs-46512	20	6	the	the	DET
afs-46512	20	7	out	out	ADJ
afs-46512	20	8	-	-	PUNCT
afs-46512	20	9	of	of	ADP
afs-46512	20	10	-	-	PUNCT
afs-46512	20	11	season	season	NOUN
afs-46512	20	12	breeding	breeding	NOUN
afs-46512	20	13	period	period	NOUN
afs-46512	20	14	(	(	PUNCT
afs-46512	20	15	june	june	PROPN
afs-46512	20	16	)	)	PUNCT
afs-46512	20	17	from	from	ADP
afs-46512	20	18	two	two	NUM
afs-46512	20	19	finnsheep	finnsheep	ADJ
afs-46512	20	20	ewes	ewe	NOUN
afs-46512	20	21	.	.	PUNCT
afs-46512	21	1	to	to	ADP
afs-46512	21	2	the	the	DET
afs-46512	21	3	best	good	ADJ
afs-46512	21	4	of	of	ADP
afs-46512	21	5	our	our	PRON
afs-46512	21	6	knowledge	knowledge	NOUN
afs-46512	21	7	,	,	PUNCT
afs-46512	21	8	this	this	PRON
afs-46512	21	9	is	be	AUX
afs-46512	21	10	the	the	DET
afs-46512	21	11	first	first	ADJ
afs-46512	21	12	transcriptome	transcriptome	ADJ
afs-46512	21	13	profiling	profile	VERB
afs-46512	21	14	study	study	NOUN
afs-46512	21	15	on	on	ADP
afs-46512	21	16	the	the	DET
afs-46512	21	17	exceptionally	exceptionally	ADV
afs-46512	21	18	prolific	prolific	ADJ
afs-46512	21	19	finnsheep	finnsheep	NOUN
afs-46512	21	20	breed	breed	NOUN
afs-46512	21	21	,	,	PUNCT
afs-46512	21	22	which	which	PRON
afs-46512	21	23	represents	represent	VERB
afs-46512	21	24	a	a	DET
afs-46512	21	25	valuable	valuable	ADJ
afs-46512	21	26	animal	animal	NOUN
afs-46512	21	27	genetic	genetic	ADJ
afs-46512	21	28	resource	resource	NOUN
afs-46512	21	29	for	for	ADP
afs-46512	21	30	the	the	DET
afs-46512	21	31	global	global	ADJ
afs-46512	21	32	sheep	sheep	NOUN
afs-46512	21	33	industry	industry	NOUN
afs-46512	21	34	.	.	PUNCT
afs-46512	22	1	manuscript	manuscript	NOUN
afs-46512	22	2	received	receive	VERB
afs-46512	22	3	august	august	PROPN
afs-46512	22	4	2014	2014	NUM
afs-46512	22	5	agricultural	agricultural	ADJ
afs-46512	22	6	and	and	CCONJ
afs-46512	22	7	food	food	NOUN
afs-46512	22	8	science	science	PROPN
afs-46512	22	9	k.	k.	PROPN
afs-46512	22	10	pokharel	pokharel	PROPN
afs-46512	22	11	et	et	PROPN
afs-46512	22	12	al	al	PROPN
afs-46512	22	13	.	.	PROPN
afs-46512	23	1	(	(	PUNCT
afs-46512	23	2	2015	2015	NUM
afs-46512	23	3	)	)	PUNCT
afs-46512	23	4	24	24	NUM
afs-46512	23	5	:	:	PUNCT
afs-46512	23	6	1–9	1–9	NUM
afs-46512	23	7	2	2	NUM
afs-46512	23	8	materials	material	NOUN
afs-46512	23	9	and	and	CCONJ
afs-46512	23	10	methods	method	NOUN
afs-46512	23	11	sample	sample	NOUN
afs-46512	23	12	collection	collection	NOUN
afs-46512	23	13	animal	animal	NOUN
afs-46512	23	14	handling	handling	NOUN
afs-46512	23	15	procedures	procedure	NOUN
afs-46512	23	16	and	and	CCONJ
afs-46512	23	17	sample	sample	NOUN
afs-46512	23	18	collection	collection	NOUN
afs-46512	23	19	were	be	AUX
afs-46512	23	20	conducted	conduct	VERB
afs-46512	23	21	following	follow	VERB
afs-46512	23	22	both	both	CCONJ
afs-46512	23	23	the	the	DET
afs-46512	23	24	finnish	finnish	ADJ
afs-46512	23	25	laws	law	NOUN
afs-46512	23	26	and	and	CCONJ
afs-46512	23	27	eu	eu	PROPN
afs-46512	23	28	directives	directive	NOUN
afs-46512	23	29	regarding	regard	VERB
afs-46512	23	30	animal	animal	NOUN
afs-46512	23	31	experimentation	experimentation	NOUN
afs-46512	23	32	and	and	CCONJ
afs-46512	23	33	occupational	occupational	ADJ
afs-46512	23	34	health	health	NOUN
afs-46512	23	35	.	.	PUNCT
afs-46512	24	1	ovarian	ovarian	ADJ
afs-46512	24	2	mrna	mrna	PROPN
afs-46512	24	3	expression	expression	NOUN
afs-46512	24	4	profiles	profile	NOUN
afs-46512	24	5	were	be	AUX
afs-46512	24	6	investigated	investigate	VERB
afs-46512	24	7	in	in	ADP
afs-46512	24	8	two	two	NUM
afs-46512	24	9	finnsheep	finnsheep	ADJ
afs-46512	24	10	ewes	ewe	NOUN
afs-46512	24	11	.	.	PUNCT
afs-46512	25	1	the	the	DET
afs-46512	25	2	two	two	NUM
afs-46512	25	3	ewes	ewe	NOUN
afs-46512	25	4	were	be	AUX
afs-46512	25	5	born	bear	VERB
afs-46512	25	6	in	in	ADP
afs-46512	25	7	january	january	PROPN
afs-46512	25	8	2011	2011	NUM
afs-46512	25	9	on	on	ADP
afs-46512	25	10	the	the	DET
afs-46512	25	11	same	same	ADJ
afs-46512	25	12	farm	farm	NOUN
afs-46512	25	13	located	locate	VERB
afs-46512	25	14	in	in	ADP
afs-46512	25	15	western	western	ADJ
afs-46512	25	16	finland	finland	PROPN
afs-46512	25	17	and	and	CCONJ
afs-46512	25	18	were	be	AUX
afs-46512	25	19	closely	closely	ADV
afs-46512	25	20	related	relate	VERB
afs-46512	25	21	(	(	PUNCT
afs-46512	25	22	coefficient	coefficient	NOUN
afs-46512	25	23	of	of	ADP
afs-46512	25	24	relation	relation	NOUN
afs-46512	25	25	between	between	ADP
afs-46512	25	26	the	the	DET
afs-46512	25	27	ewes	ewe	NOUN
afs-46512	25	28	was	be	AUX
afs-46512	25	29	0.375	0.375	NUM
afs-46512	25	30	as	as	SCONJ
afs-46512	25	31	estimated	estimate	VERB
afs-46512	25	32	from	from	ADP
afs-46512	25	33	the	the	DET
afs-46512	25	34	pedigree	pedigree	ADJ
afs-46512	25	35	records	record	NOUN
afs-46512	25	36	)	)	PUNCT
afs-46512	25	37	.	.	PUNCT
afs-46512	26	1	one	one	NUM
afs-46512	26	2	ovary	ovary	NOUN
afs-46512	26	3	from	from	ADP
afs-46512	26	4	each	each	PRON
afs-46512	26	5	of	of	ADP
afs-46512	26	6	the	the	DET
afs-46512	26	7	ewes	ewe	NOUN
afs-46512	26	8	was	be	AUX
afs-46512	26	9	collected	collect	VERB
afs-46512	26	10	after	after	ADP
afs-46512	26	11	slaughter	slaughter	NOUN
afs-46512	26	12	during	during	ADP
afs-46512	26	13	june	june	PROPN
afs-46512	26	14	2012	2012	NUM
afs-46512	26	15	.	.	PUNCT
afs-46512	27	1	the	the	DET
afs-46512	27	2	samples	sample	NOUN
afs-46512	27	3	were	be	AUX
afs-46512	27	4	decoded	decode	VERB
afs-46512	27	5	and	and	CCONJ
afs-46512	27	6	hereafter	hereafter	ADV
afs-46512	27	7	are	be	AUX
afs-46512	27	8	referred	refer	VERB
afs-46512	27	9	as	as	ADP
afs-46512	27	10	s48	s48	NOUN
afs-46512	27	11	and	and	CCONJ
afs-46512	27	12	s50	s50	NOUN
afs-46512	27	13	.	.	PUNCT
afs-46512	28	1	rna	rna	NOUN
afs-46512	28	2	isolation	isolation	NOUN
afs-46512	28	3	and	and	CCONJ
afs-46512	28	4	sequencing	sequence	VERB
afs-46512	28	5	ovaries	ovary	NOUN
afs-46512	28	6	were	be	AUX
afs-46512	28	7	dissected	dissect	VERB
afs-46512	28	8	into	into	ADP
afs-46512	28	9	4	4	NUM
afs-46512	28	10	sections	section	NOUN
afs-46512	28	11	and	and	CCONJ
afs-46512	28	12	stored	store	VERB
afs-46512	28	13	in	in	ADP
afs-46512	28	14	rnalater	rnalater	ADJ
afs-46512	28	15	reagent	reagent	NOUN
afs-46512	28	16	(	(	PUNCT
afs-46512	28	17	qiagen	qiagen	PROPN
afs-46512	28	18	,	,	PUNCT
afs-46512	28	19	valencia	valencia	PROPN
afs-46512	28	20	,	,	PUNCT
afs-46512	28	21	ca	ca	PROPN
afs-46512	28	22	,	,	PUNCT
afs-46512	28	23	usa	usa	PROPN
afs-46512	28	24	)	)	PUNCT
afs-46512	28	25	at	at	ADP
afs-46512	28	26	–	–	PUNCT
afs-46512	28	27	20	20	NUM
afs-46512	29	1	°	°	NUM
afs-46512	29	2	c	c	NOUN
afs-46512	29	3	until	until	ADP
afs-46512	29	4	use	use	NOUN
afs-46512	29	5	.	.	PUNCT
afs-46512	30	1	total	total	ADJ
afs-46512	30	2	rna	rna	PROPN
afs-46512	30	3	was	be	AUX
afs-46512	30	4	extracted	extract	VERB
afs-46512	30	5	using	use	VERB
afs-46512	30	6	the	the	DET
afs-46512	30	7	rneasy	rneasy	NOUN
afs-46512	30	8	plus	plus	CCONJ
afs-46512	30	9	mini	mini	ADJ
afs-46512	30	10	kit	kit	NOUN
afs-46512	30	11	(	(	PUNCT
afs-46512	30	12	qiagen	qiagen	PROPN
afs-46512	30	13	,	,	PUNCT
afs-46512	30	14	valencia	valencia	PROPN
afs-46512	30	15	,	,	PUNCT
afs-46512	30	16	ca	ca	PROPN
afs-46512	30	17	,	,	PUNCT
afs-46512	30	18	usa	usa	PROPN
afs-46512	30	19	)	)	PUNCT
afs-46512	30	20	.	.	PUNCT
afs-46512	31	1	rna	rna	NOUN
afs-46512	31	2	concentration	concentration	NOUN
afs-46512	31	3	and	and	CCONJ
afs-46512	31	4	rin	rin	NOUN
afs-46512	31	5	(	(	PUNCT
afs-46512	31	6	rna	rna	NOUN
afs-46512	31	7	integrity	integrity	NOUN
afs-46512	31	8	number	number	NOUN
afs-46512	31	9	)	)	PUNCT
afs-46512	31	10	values	value	NOUN
afs-46512	31	11	were	be	AUX
afs-46512	31	12	checked	check	VERB
afs-46512	31	13	using	use	VERB
afs-46512	31	14	a	a	DET
afs-46512	31	15	bioanalyzer	bioanalyzer	NOUN
afs-46512	31	16	2100	2100	NUM
afs-46512	31	17	(	(	PUNCT
afs-46512	31	18	agilent	agilent	PROPN
afs-46512	31	19	technologies	technology	NOUN
afs-46512	31	20	)	)	PUNCT
afs-46512	31	21	.	.	PUNCT
afs-46512	32	1	cdna	cdna	PROPN
afs-46512	32	2	libraries	library	NOUN
afs-46512	32	3	were	be	AUX
afs-46512	32	4	prepared	prepare	VERB
afs-46512	32	5	and	and	CCONJ
afs-46512	32	6	sequenced	sequence	VERB
afs-46512	32	7	using	use	VERB
afs-46512	32	8	illumina	illumina	PROPN
afs-46512	32	9	hiseq	hiseq	PROPN
afs-46512	32	10	2000	2000	NUM
afs-46512	32	11	(	(	PUNCT
afs-46512	32	12	illumina	illumina	PROPN
afs-46512	32	13	,	,	PUNCT
afs-46512	32	14	san	san	PROPN
afs-46512	32	15	diego	diego	PROPN
afs-46512	32	16	,	,	PUNCT
afs-46512	32	17	ca	ca	NOUN
afs-46512	32	18	)	)	PUNCT
afs-46512	32	19	at	at	ADP
afs-46512	32	20	the	the	DET
afs-46512	32	21	institute	institute	NOUN
afs-46512	32	22	of	of	ADP
afs-46512	32	23	molecular	molecular	ADJ
afs-46512	32	24	medicine	medicine	NOUN
afs-46512	32	25	finland	finland	PROPN
afs-46512	32	26	as	as	SCONJ
afs-46512	32	27	detailed	detail	VERB
afs-46512	32	28	in	in	ADP
afs-46512	32	29	koskela	koskela	PROPN
afs-46512	32	30	et	et	PROPN
afs-46512	32	31	al	al	PROPN
afs-46512	32	32	.	.	PROPN
afs-46512	33	1	(	(	PUNCT
afs-46512	33	2	2012	2012	NUM
afs-46512	33	3	)	)	PUNCT
afs-46512	33	4	,	,	PUNCT
afs-46512	33	5	generating	generate	VERB
afs-46512	33	6	100	100	NUM
afs-46512	33	7	-	-	PUNCT
afs-46512	33	8	bp	bp	NOUN
afs-46512	33	9	paired	pair	VERB
afs-46512	33	10	-	-	PUNCT
afs-46512	33	11	end	end	NOUN
afs-46512	33	12	reads	read	NOUN
afs-46512	33	13	.	.	PUNCT
afs-46512	34	1	the	the	DET
afs-46512	34	2	rna	rna	NOUN
afs-46512	34	3	-	-	PUNCT
afs-46512	34	4	seq	seq	NOUN
afs-46512	34	5	sequencing	sequence	VERB
afs-46512	34	6	data	datum	NOUN
afs-46512	34	7	have	have	AUX
afs-46512	34	8	been	be	AUX
afs-46512	34	9	deposited	deposit	VERB
afs-46512	34	10	in	in	ADP
afs-46512	34	11	the	the	DET
afs-46512	34	12	sequence	sequence	NOUN
afs-46512	34	13	read	read	VERB
afs-46512	34	14	archive	archive	NOUN
afs-46512	34	15	(	(	PUNCT
afs-46512	34	16	sra	sra	PROPN
afs-46512	34	17	,	,	PUNCT
afs-46512	34	18	http://www.ncbi.nlm.nih.gov/sra/	http://www.ncbi.nlm.nih.gov/sra/	PROPN
afs-46512	34	19	)	)	PUNCT
afs-46512	34	20	with	with	ADP
afs-46512	34	21	the	the	DET
afs-46512	34	22	accession	accession	NOUN
afs-46512	34	23	number	number	NOUN
afs-46512	34	24	srx791949	srx791949	NOUN
afs-46512	34	25	.	.	PUNCT
afs-46512	35	1	transcriptome	transcriptome	ADJ
afs-46512	35	2	assembly	assembly	NOUN
afs-46512	35	3	and	and	CCONJ
afs-46512	35	4	annotation	annotation	NOUN
afs-46512	35	5	the	the	DET
afs-46512	35	6	used	use	VERB
afs-46512	35	7	bioinformatics	bioinformatics	NOUN
afs-46512	35	8	pipeline	pipeline	NOUN
afs-46512	35	9	is	be	AUX
afs-46512	35	10	illustrated	illustrate	VERB
afs-46512	35	11	in	in	ADP
afs-46512	35	12	figure	figure	NOUN
afs-46512	35	13	1	1	NUM
afs-46512	35	14	.	.	PUNCT
afs-46512	36	1	the	the	DET
afs-46512	36	2	quality	quality	NOUN
afs-46512	36	3	of	of	ADP
afs-46512	36	4	reads	read	NOUN
afs-46512	36	5	was	be	AUX
afs-46512	36	6	assessed	assess	VERB
afs-46512	36	7	using	use	VERB
afs-46512	36	8	fastqc	fastqc	ADJ
afs-46512	36	9	version	version	NOUN
afs-46512	36	10	0.10.1	0.10.1	NUM
afs-46512	36	11	(	(	PUNCT
afs-46512	36	12	simon	simon	PROPN
afs-46512	36	13	andrews	andrews	PROPN
afs-46512	36	14	)	)	PUNCT
afs-46512	36	15	.	.	PUNCT
afs-46512	37	1	the	the	DET
afs-46512	37	2	sheep	sheep	NOUN
afs-46512	37	3	reference	reference	NOUN
afs-46512	37	4	genome	genome	NOUN
afs-46512	37	5	(	(	PUNCT
afs-46512	37	6	oarv	oarv	NOUN
afs-46512	37	7	3.1	3.1	NUM
afs-46512	37	8	)	)	PUNCT
afs-46512	37	9	and	and	CCONJ
afs-46512	37	10	reference	reference	NOUN
afs-46512	37	11	genes	gene	NOUN
afs-46512	37	12	were	be	AUX
afs-46512	37	13	downloaded	download	VERB
afs-46512	37	14	from	from	ADP
afs-46512	37	15	ensembl	ensembl	PROPN
afs-46512	37	16	database	database	NOUN
afs-46512	37	17	(	(	PUNCT
afs-46512	37	18	ensembl	ensembl	PROPN
afs-46512	37	19	release	release	NOUN
afs-46512	37	20	74	74	NUM
afs-46512	37	21	)	)	PUNCT
afs-46512	37	22	.	.	PUNCT
afs-46512	38	1	we	we	PRON
afs-46512	38	2	mapped	map	VERB
afs-46512	38	3	the	the	DET
afs-46512	38	4	obtained	obtain	VERB
afs-46512	38	5	reads	read	NOUN
afs-46512	38	6	to	to	ADP
afs-46512	38	7	the	the	DET
afs-46512	38	8	ovine	ovine	ADJ
afs-46512	38	9	reference	reference	NOUN
afs-46512	38	10	genome	genome	NOUN
afs-46512	38	11	and	and	CCONJ
afs-46512	38	12	gene	gene	NOUN
afs-46512	38	13	sequences	sequence	NOUN
afs-46512	38	14	using	use	VERB
afs-46512	38	15	tophat	tophat	NOUN
afs-46512	38	16	v2.0.9	v2.0.9	ADV
afs-46512	38	17	(	(	PUNCT
afs-46512	38	18	kim	kim	PROPN
afs-46512	38	19	et	et	PROPN
afs-46512	38	20	al	al	PROPN
afs-46512	38	21	.	.	PROPN
afs-46512	38	22	2013	2013	NUM
afs-46512	38	23	)	)	PUNCT
afs-46512	38	24	.	.	PUNCT
afs-46512	39	1	cufflinks	cufflinks	PROPN
afs-46512	39	2	v2.1.1	v2.1.1	PROPN
afs-46512	39	3	(	(	PUNCT
afs-46512	39	4	trapnell	trapnell	NOUN
afs-46512	39	5	et	et	NOUN
afs-46512	39	6	al	al	PROPN
afs-46512	39	7	.	.	PROPN
afs-46512	39	8	2010	2010	NUM
afs-46512	39	9	)	)	PUNCT
afs-46512	39	10	was	be	AUX
afs-46512	39	11	used	use	VERB
afs-46512	39	12	to	to	PART
afs-46512	39	13	assemble	assemble	VERB
afs-46512	39	14	transcripts	transcript	NOUN
afs-46512	39	15	from	from	ADP
afs-46512	39	16	the	the	DET
afs-46512	39	17	rna	rna	NOUN
afs-46512	39	18	-	-	PUNCT
afs-46512	39	19	seq	seq	NOUN
afs-46512	39	20	alignments	alignment	NOUN
afs-46512	39	21	.	.	PUNCT
afs-46512	40	1	in	in	ADP
afs-46512	40	2	addition	addition	NOUN
afs-46512	40	3	,	,	PUNCT
afs-46512	40	4	two	two	NUM
afs-46512	40	5	different	different	ADJ
afs-46512	40	6	assemblies	assembly	NOUN
afs-46512	40	7	for	for	ADP
afs-46512	40	8	each	each	DET
afs-46512	40	9	sample	sample	NOUN
afs-46512	40	10	were	be	AUX
afs-46512	40	11	compared	compare	VERB
afs-46512	40	12	and	and	CCONJ
afs-46512	40	13	combined	combine	VERB
afs-46512	40	14	with	with	ADP
afs-46512	40	15	reference	reference	NOUN
afs-46512	40	16	transcriptome	transcriptome	NOUN
afs-46512	40	17	to	to	PART
afs-46512	40	18	identify	identify	VERB
afs-46512	40	19	unknown	unknown	ADJ
afs-46512	40	20	transcripts	transcript	NOUN
afs-46512	40	21	in	in	ADP
afs-46512	40	22	the	the	DET
afs-46512	40	23	data	datum	NOUN
afs-46512	40	24	using	use	VERB
afs-46512	40	25	the	the	DET
afs-46512	40	26	cuffcompare	cuffcompare	PROPN
afs-46512	40	27	program	program	NOUN
afs-46512	40	28	of	of	ADP
afs-46512	40	29	cufflinks	cufflink	NOUN
afs-46512	40	30	.	.	PUNCT
afs-46512	41	1	all	all	PRON
afs-46512	41	2	reads	read	VERB
afs-46512	41	3	that	that	SCONJ
afs-46512	41	4	exclusively	exclusively	ADV
afs-46512	41	5	mapped	map	VERB
afs-46512	41	6	to	to	ADP
afs-46512	41	7	ovine	ovine	ADJ
afs-46512	41	8	genes	gene	NOUN
afs-46512	41	9	were	be	AUX
afs-46512	41	10	quantified	quantify	VERB
afs-46512	41	11	using	use	VERB
afs-46512	41	12	htseq	htseq	NOUN
afs-46512	41	13	-	-	PUNCT
afs-46512	41	14	count	count	NOUN
afs-46512	41	15	software	software	NOUN
afs-46512	41	16	package	package	NOUN
afs-46512	41	17	(	(	PUNCT
afs-46512	41	18	anders	anders	X
afs-46512	41	19	et	et	PROPN
afs-46512	41	20	al	al	PROPN
afs-46512	41	21	.	.	PROPN
afs-46512	41	22	2015	2015	NUM
afs-46512	41	23	)	)	PUNCT
afs-46512	41	24	.	.	PUNCT
afs-46512	42	1	gene	gene	NOUN
afs-46512	42	2	expression	expression	NOUN
afs-46512	42	3	levels	level	NOUN
afs-46512	42	4	of	of	ADP
afs-46512	42	5	read	read	NOUN
afs-46512	42	6	counts	count	NOUN
afs-46512	42	7	obtained	obtain	VERB
afs-46512	42	8	from	from	ADP
afs-46512	42	9	htseq	htseq	NOUN
afs-46512	42	10	-	-	PUNCT
afs-46512	42	11	count	count	NOUN
afs-46512	42	12	were	be	AUX
afs-46512	42	13	measured	measure	VERB
afs-46512	42	14	in	in	ADP
afs-46512	42	15	the	the	DET
afs-46512	42	16	r	r	NOUN
afs-46512	42	17	statistical	statistical	ADJ
afs-46512	42	18	environment	environment	NOUN
afs-46512	42	19	using	use	VERB
afs-46512	42	20	the	the	DET
afs-46512	42	21	deseq	deseq	NOUN
afs-46512	42	22	bioconductor	bioconductor	NOUN
afs-46512	42	23	package	package	NOUN
afs-46512	42	24	(	(	PUNCT
afs-46512	42	25	anders	ander	NOUN
afs-46512	42	26	and	and	CCONJ
afs-46512	42	27	huber	huber	PROPN
afs-46512	42	28	2010	2010	NUM
afs-46512	42	29	)	)	PUNCT
afs-46512	42	30	.	.	PUNCT
afs-46512	43	1	fig	fig	NOUN
afs-46512	43	2	.	.	PUNCT
afs-46512	44	1	1	1	X
afs-46512	44	2	.	.	X
afs-46512	44	3	rna	rna	NOUN
afs-46512	44	4	-	-	PUNCT
afs-46512	44	5	seq	seq	NOUN
afs-46512	44	6	pipeline	pipeline	NOUN
afs-46512	44	7	.	.	PUNCT
afs-46512	45	1	flowchart	flowchart	PROPN
afs-46512	45	2	illustrates	illustrate	VERB
afs-46512	45	3	the	the	DET
afs-46512	45	4	bioinformatics	bioinformatics	NOUN
afs-46512	45	5	pipeline	pipeline	NOUN
afs-46512	45	6	used	use	VERB
afs-46512	45	7	to	to	PART
afs-46512	45	8	analyse	analyse	VERB
afs-46512	45	9	the	the	DET
afs-46512	45	10	rna	rna	NOUN
afs-46512	45	11	-	-	PUNCT
afs-46512	45	12	seq	seq	NOUN
afs-46512	45	13	data	datum	NOUN
afs-46512	45	14	.	.	PUNCT
afs-46512	46	1	arrows	arrow	NOUN
afs-46512	46	2	indicate	indicate	VERB
afs-46512	46	3	data	datum	NOUN
afs-46512	46	4	flow	flow	NOUN
afs-46512	46	5	;	;	PUNCT
afs-46512	46	6	analysis	analysis	NOUN
afs-46512	46	7	steps	step	NOUN
afs-46512	46	8	are	be	AUX
afs-46512	46	9	marked	mark	VERB
afs-46512	46	10	by	by	ADP
afs-46512	46	11	hexagons	hexagon	NOUN
afs-46512	46	12	;	;	PUNCT
afs-46512	46	13	rectangles	rectangle	NOUN
afs-46512	46	14	indicate	indicate	VERB
afs-46512	46	15	output	output	NOUN
afs-46512	46	16	data	datum	NOUN
afs-46512	46	17	and	and	CCONJ
afs-46512	46	18	rounded	rounded	ADJ
afs-46512	46	19	rectangles	rectangle	NOUN
afs-46512	46	20	indicate	indicate	VERB
afs-46512	46	21	tools	tool	NOUN
afs-46512	46	22	and	and	CCONJ
afs-46512	46	23	programs	program	NOUN
afs-46512	46	24	.	.	PUNCT
afs-46512	47	1	agricultural	agricultural	ADJ
afs-46512	47	2	and	and	CCONJ
afs-46512	47	3	food	food	NOUN
afs-46512	47	4	science	science	PROPN
afs-46512	47	5	k.	k.	PROPN
afs-46512	47	6	pokharel	pokharel	PROPN
afs-46512	47	7	et	et	PROPN
afs-46512	47	8	al	al	PROPN
afs-46512	47	9	.	.	PROPN
afs-46512	48	1	(	(	PUNCT
afs-46512	48	2	2015	2015	NUM
afs-46512	48	3	)	)	PUNCT
afs-46512	48	4	24	24	NUM
afs-46512	48	5	:	:	PUNCT
afs-46512	48	6	1–9	1–9	NUM
afs-46512	48	7	3	3	NUM
afs-46512	48	8	we	we	PRON
afs-46512	48	9	used	use	VERB
afs-46512	48	10	blast2go	blast2go	PROPN
afs-46512	48	11	(	(	PUNCT
afs-46512	48	12	conesa	conesa	PROPN
afs-46512	48	13	et	et	PROPN
afs-46512	48	14	al	al	PROPN
afs-46512	48	15	.	.	PROPN
afs-46512	48	16	2005	2005	NUM
afs-46512	48	17	)	)	PUNCT
afs-46512	48	18	for	for	ADP
afs-46512	48	19	retrieving	retrieve	VERB
afs-46512	48	20	kyoto	kyoto	NOUN
afs-46512	48	21	encyclopedia	encyclopedia	NOUN
afs-46512	48	22	of	of	ADP
afs-46512	48	23	genes	gene	NOUN
afs-46512	48	24	and	and	CCONJ
afs-46512	48	25	genomes	genome	NOUN
afs-46512	48	26	(	(	PUNCT
afs-46512	48	27	kegg	kegg	NOUN
afs-46512	48	28	)	)	PUNCT
afs-46512	48	29	pathways	pathway	NOUN
afs-46512	48	30	and	and	CCONJ
afs-46512	48	31	analyzing	analyze	VERB
afs-46512	48	32	annotation	annotation	NOUN
afs-46512	48	33	data	datum	NOUN
afs-46512	48	34	.	.	PUNCT
afs-46512	49	1	ensembl	ensembl	PROPN
afs-46512	49	2	biomart	biomart	PROPN
afs-46512	49	3	(	(	PUNCT
afs-46512	49	4	kinsella	kinsella	PROPN
afs-46512	49	5	et	et	PROPN
afs-46512	49	6	al	al	PROPN
afs-46512	49	7	.	.	PROPN
afs-46512	49	8	2011	2011	NUM
afs-46512	49	9	)	)	PUNCT
afs-46512	49	10	was	be	AUX
afs-46512	49	11	used	use	VERB
afs-46512	49	12	to	to	PART
afs-46512	49	13	retrieve	retrieve	VERB
afs-46512	49	14	gene	gene	NOUN
afs-46512	49	15	ontology	ontology	NOUN
afs-46512	49	16	(	(	PUNCT
afs-46512	49	17	go	go	VERB
afs-46512	49	18	)	)	PUNCT
afs-46512	49	19	terms	term	NOUN
afs-46512	49	20	associated	associate	VERB
afs-46512	49	21	with	with	ADP
afs-46512	49	22	all	all	DET
afs-46512	49	23	expressed	express	VERB
afs-46512	49	24	genes	gene	NOUN
afs-46512	49	25	and	and	CCONJ
afs-46512	49	26	updated	update	VERB
afs-46512	49	27	annotation	annotation	NOUN
afs-46512	49	28	for	for	ADP
afs-46512	49	29	ensembl	ensembl	PROPN
afs-46512	49	30	ids	id	NOUN
afs-46512	49	31	with	with	ADP
afs-46512	49	32	missing	miss	VERB
afs-46512	49	33	information	information	NOUN
afs-46512	49	34	.	.	PUNCT
afs-46512	50	1	we	we	PRON
afs-46512	50	2	annotated	annotate	VERB
afs-46512	50	3	unknown	unknown	ADJ
afs-46512	50	4	transcripts	transcript	NOUN
afs-46512	50	5	,	,	PUNCT
afs-46512	50	6	i.e.	i.e.	X
afs-46512	50	7	all	all	DET
afs-46512	50	8	transcripts	transcript	NOUN
afs-46512	50	9	that	that	PRON
afs-46512	50	10	did	do	AUX
afs-46512	50	11	not	not	PART
afs-46512	50	12	match	match	VERB
afs-46512	50	13	to	to	ADP
afs-46512	50	14	sheep	sheep	NOUN
afs-46512	50	15	genes	gene	NOUN
afs-46512	50	16	,	,	PUNCT
afs-46512	50	17	by	by	ADP
afs-46512	50	18	implementing	implement	VERB
afs-46512	50	19	blast	blast	NOUN
afs-46512	50	20	search	search	NOUN
afs-46512	50	21	and	and	CCONJ
afs-46512	50	22	interpro	interpro	ADJ
afs-46512	50	23	query	query	NOUN
afs-46512	50	24	in	in	ADP
afs-46512	50	25	blast2go	blast2go	PROPN
afs-46512	50	26	.	.	PUNCT
afs-46512	51	1	genes	gene	NOUN
afs-46512	51	2	associated	associate	VERB
afs-46512	51	3	with	with	ADP
afs-46512	51	4	fertility	fertility	NOUN
afs-46512	51	5	and	and	CCONJ
afs-46512	51	6	out	out	ADP
afs-46512	51	7	-	-	PUNCT
afs-46512	51	8	of	of	ADP
afs-46512	51	9	-	-	PUNCT
afs-46512	51	10	season	season	NOUN
afs-46512	51	11	breeding	breeding	NOUN
afs-46512	51	12	were	be	AUX
afs-46512	51	13	analyzed	analyze	VERB
afs-46512	51	14	in	in	ADP
afs-46512	51	15	detail	detail	NOUN
afs-46512	51	16	.	.	PUNCT
afs-46512	52	1	both	both	CCONJ
afs-46512	52	2	the	the	DET
afs-46512	52	3	nucleotide	nucleotide	NOUN
afs-46512	52	4	and	and	CCONJ
afs-46512	52	5	amino	amino	NOUN
afs-46512	52	6	acid	acid	NOUN
afs-46512	52	7	variants	variant	NOUN
afs-46512	52	8	in	in	ADP
afs-46512	52	9	three	three	NUM
afs-46512	52	10	major	major	ADJ
afs-46512	52	11	candidate	candidate	NOUN
afs-46512	52	12	genes	gene	NOUN
afs-46512	52	13	(	(	PUNCT
afs-46512	52	14	gdf9	gdf9	PROPN
afs-46512	52	15	,	,	PUNCT
afs-46512	52	16	bmp15	bmp15	PROPN
afs-46512	52	17	and	and	CCONJ
afs-46512	52	18	bmpr1b	bmpr1b	NOUN
afs-46512	52	19	)	)	PUNCT
afs-46512	52	20	were	be	AUX
afs-46512	52	21	identified	identify	VERB
afs-46512	52	22	and	and	CCONJ
afs-46512	52	23	assessed	assess	VERB
afs-46512	52	24	visually	visually	ADV
afs-46512	52	25	using	use	VERB
afs-46512	52	26	the	the	DET
afs-46512	52	27	program	program	NOUN
afs-46512	52	28	integrative	integrative	ADJ
afs-46512	52	29	genomics	genomic	NOUN
afs-46512	52	30	viewer	viewer	NOUN
afs-46512	52	31	(	(	PUNCT
afs-46512	52	32	igv	igv	NOUN
afs-46512	52	33	)	)	PUNCT
afs-46512	52	34	version	version	NOUN
afs-46512	52	35	2.3.26	2.3.26	NUM
afs-46512	52	36	(	(	PUNCT
afs-46512	52	37	thorvaldsdóttir	thorvaldsdóttir	NOUN
afs-46512	52	38	et	et	PROPN
afs-46512	52	39	al	al	PROPN
afs-46512	52	40	.	.	PROPN
afs-46512	52	41	2013	2013	NUM
afs-46512	52	42	)	)	PUNCT
afs-46512	52	43	.	.	PUNCT
afs-46512	53	1	results	result	VERB
afs-46512	53	2	transcriptome	transcriptome	ADJ
afs-46512	53	3	sequencing	sequencing	NOUN
afs-46512	53	4	and	and	CCONJ
afs-46512	53	5	assembly	assembly	NOUN
afs-46512	53	6	a	a	DET
afs-46512	53	7	total	total	NOUN
afs-46512	53	8	of	of	ADP
afs-46512	53	9	192554342	192554342	NUM
afs-46512	53	10	rna	rna	NOUN
afs-46512	53	11	-	-	PUNCT
afs-46512	53	12	seq	seq	NOUN
afs-46512	53	13	reads	read	NOUN
afs-46512	53	14	representing	represent	VERB
afs-46512	53	15	the	the	DET
afs-46512	53	16	two	two	NUM
afs-46512	53	17	studied	study	VERB
afs-46512	53	18	samples	sample	NOUN
afs-46512	53	19	,	,	PUNCT
afs-46512	53	20	s48	s48	PROPN
afs-46512	53	21	(	(	PUNCT
afs-46512	53	22	86966348	86966348	NUM
afs-46512	53	23	reads	read	NOUN
afs-46512	53	24	)	)	PUNCT
afs-46512	53	25	and	and	CCONJ
afs-46512	53	26	s50	s50	NOUN
afs-46512	53	27	(	(	PUNCT
afs-46512	53	28	105587994	105587994	NUM
afs-46512	53	29	reads	read	NOUN
afs-46512	53	30	)	)	PUNCT
afs-46512	53	31	,	,	PUNCT
afs-46512	53	32	were	be	AUX
afs-46512	53	33	generated	generate	VERB
afs-46512	53	34	by	by	ADP
afs-46512	53	35	illumina	illumina	NOUN
afs-46512	53	36	sequencing	sequencing	NOUN
afs-46512	53	37	.	.	PUNCT
afs-46512	54	1	the	the	DET
afs-46512	54	2	overall	overall	ADJ
afs-46512	54	3	quality	quality	NOUN
afs-46512	54	4	of	of	ADP
afs-46512	54	5	the	the	DET
afs-46512	54	6	reads	read	NOUN
afs-46512	54	7	was	be	AUX
afs-46512	54	8	very	very	ADV
afs-46512	54	9	good	good	ADJ
afs-46512	54	10	with	with	ADP
afs-46512	54	11	an	an	DET
afs-46512	54	12	average	average	ADJ
afs-46512	54	13	quality	quality	NOUN
afs-46512	54	14	score	score	NOUN
afs-46512	54	15	across	across	ADP
afs-46512	54	16	all	all	DET
afs-46512	54	17	bases	basis	NOUN
afs-46512	54	18	greater	great	ADJ
afs-46512	54	19	than	than	ADP
afs-46512	54	20	28	28	NUM
afs-46512	54	21	.	.	PUNCT
afs-46512	55	1	thus	thus	ADV
afs-46512	55	2	,	,	PUNCT
afs-46512	55	3	we	we	PRON
afs-46512	55	4	did	do	AUX
afs-46512	55	5	not	not	PART
afs-46512	55	6	perform	perform	VERB
afs-46512	55	7	any	any	DET
afs-46512	55	8	filtration	filtration	NOUN
afs-46512	55	9	and	and	CCONJ
afs-46512	55	10	trimming	trimming	NOUN
afs-46512	55	11	of	of	ADP
afs-46512	55	12	the	the	DET
afs-46512	55	13	data	datum	NOUN
afs-46512	55	14	.	.	PUNCT
afs-46512	56	1	gc	gc	PROPN
afs-46512	56	2	contents	content	NOUN
afs-46512	56	3	for	for	ADP
afs-46512	56	4	s48	s48	NOUN
afs-46512	56	5	and	and	CCONJ
afs-46512	56	6	s50	s50	NOUN
afs-46512	56	7	were	be	AUX
afs-46512	56	8	54	54	NUM
afs-46512	56	9	%	%	NOUN
afs-46512	56	10	and	and	CCONJ
afs-46512	56	11	55	55	NUM
afs-46512	56	12	%	%	NOUN
afs-46512	56	13	,	,	PUNCT
afs-46512	56	14	respectively	respectively	ADV
afs-46512	56	15	.	.	PUNCT
afs-46512	57	1	high	high	ADJ
afs-46512	57	2	quality	quality	NOUN
afs-46512	57	3	reads	read	NOUN
afs-46512	57	4	were	be	AUX
afs-46512	57	5	aligned	align	VERB
afs-46512	57	6	to	to	ADP
afs-46512	57	7	the	the	DET
afs-46512	57	8	ovine	ovine	ADJ
afs-46512	57	9	genome	genome	NOUN
afs-46512	57	10	using	use	VERB
afs-46512	57	11	tophat	tophat	NOUN
afs-46512	57	12	v2.0.9	v2.0.9	ADV
afs-46512	57	13	.	.	PUNCT
afs-46512	58	1	without	without	ADP
afs-46512	58	2	any	any	DET
afs-46512	58	3	filtering	filtering	NOUN
afs-46512	58	4	for	for	ADP
afs-46512	58	5	base	base	ADJ
afs-46512	58	6	quality	quality	NOUN
afs-46512	58	7	scores	score	NOUN
afs-46512	58	8	,	,	PUNCT
afs-46512	58	9	68.6	68.6	NUM
afs-46512	58	10	%	%	NOUN
afs-46512	58	11	and	and	CCONJ
afs-46512	58	12	68.2	68.2	NUM
afs-46512	58	13	%	%	NOUN
afs-46512	58	14	of	of	ADP
afs-46512	58	15	the	the	DET
afs-46512	58	16	rna	rna	NOUN
afs-46512	58	17	-	-	PUNCT
afs-46512	58	18	seq	seq	NOUN
afs-46512	58	19	reads	read	NOUN
afs-46512	58	20	from	from	ADP
afs-46512	58	21	the	the	DET
afs-46512	58	22	s50	s50	NOUN
afs-46512	58	23	and	and	CCONJ
afs-46512	58	24	s48	s48	PROPN
afs-46512	58	25	,	,	PUNCT
afs-46512	58	26	respectively	respectively	ADV
afs-46512	58	27	,	,	PUNCT
afs-46512	58	28	were	be	AUX
afs-46512	58	29	mapped	map	VERB
afs-46512	58	30	to	to	ADP
afs-46512	58	31	the	the	DET
afs-46512	58	32	ovine	ovine	ADJ
afs-46512	58	33	reference	reference	NOUN
afs-46512	58	34	genome	genome	NOUN
afs-46512	58	35	.	.	PUNCT
afs-46512	59	1	gene	gene	NOUN
afs-46512	59	2	expression	expression	NOUN
afs-46512	59	3	profiling	profile	VERB
afs-46512	59	4	the	the	DET
afs-46512	59	5	recent	recent	ADJ
afs-46512	59	6	ovine	ovine	ADJ
afs-46512	59	7	reference	reference	NOUN
afs-46512	59	8	genome	genome	NOUN
afs-46512	59	9	(	(	PUNCT
afs-46512	59	10	oarv3.1	oarv3.1	PROPN
afs-46512	59	11	,	,	PUNCT
afs-46512	59	12	december	december	PROPN
afs-46512	59	13	2013	2013	NUM
afs-46512	59	14	)	)	PUNCT
afs-46512	59	15	of	of	ADP
afs-46512	59	16	ensembl	ensembl	PROPN
afs-46512	59	17	was	be	AUX
afs-46512	59	18	used	use	VERB
afs-46512	59	19	for	for	ADP
afs-46512	59	20	annotating	annotate	VERB
afs-46512	59	21	and	and	CCONJ
afs-46512	59	22	counting	counting	NOUN
afs-46512	59	23	reads	read	NOUN
afs-46512	59	24	that	that	PRON
afs-46512	59	25	mapped	map	VERB
afs-46512	59	26	to	to	ADP
afs-46512	59	27	genomic	genomic	ADJ
afs-46512	59	28	features	feature	NOUN
afs-46512	59	29	.	.	PUNCT
afs-46512	60	1	altogether	altogether	ADV
afs-46512	60	2	14875	14875	NUM
afs-46512	60	3	genes	gene	NOUN
afs-46512	60	4	were	be	AUX
afs-46512	60	5	expressed	express	VERB
afs-46512	60	6	in	in	ADP
afs-46512	60	7	both	both	DET
afs-46512	60	8	samples	sample	NOUN
afs-46512	60	9	with	with	ADP
afs-46512	60	10	the	the	DET
afs-46512	60	11	base	base	NOUN
afs-46512	60	12	mean	mean	NOUN
afs-46512	60	13	expression	expression	NOUN
afs-46512	60	14	values	value	NOUN
afs-46512	60	15	of	of	ADP
afs-46512	60	16	>	>	X
afs-46512	60	17	10	10	NUM
afs-46512	60	18	.	.	PUNCT
afs-46512	61	1	the	the	DET
afs-46512	61	2	ten	ten	NUM
afs-46512	61	3	most	most	ADV
afs-46512	61	4	highly	highly	ADV
afs-46512	61	5	expressed	express	VERB
afs-46512	61	6	genes	gene	NOUN
afs-46512	61	7	(	(	PUNCT
afs-46512	61	8	col1a1	col1a1	NOUN
afs-46512	61	9	,	,	PUNCT
afs-46512	61	10	col1a2	col1a2	NOUN
afs-46512	61	11	,	,	PUNCT
afs-46512	61	12	cox1	cox1	NOUN
afs-46512	61	13	,	,	PUNCT
afs-46512	61	14	ensoarg00000000004	ensoarg00000000004	PROPN
afs-46512	61	15	,	,	PUNCT
afs-46512	61	16	ensoarg00000006149	ensoarg00000006149	PROPN
afs-46512	61	17	,	,	PUNCT
afs-46512	61	18	col3a1	col3a1	PROPN
afs-46512	61	19	,	,	PUNCT
afs-46512	61	20	eef2	eef2	PROPN
afs-46512	61	21	,	,	PUNCT
afs-46512	61	22	actb	actb	ADV
afs-46512	61	23	,	,	PUNCT
afs-46512	61	24	inha	inha	NOUN
afs-46512	61	25	and	and	CCONJ
afs-46512	61	26	serpine2	serpine2	PROPN
afs-46512	61	27	)	)	PUNCT
afs-46512	61	28	contributed	contribute	VERB
afs-46512	61	29	to	to	ADP
afs-46512	61	30	9.1	9.1	NUM
afs-46512	61	31	%	%	NOUN
afs-46512	61	32	(	(	PUNCT
afs-46512	61	33	2272788	2272788	NUM
afs-46512	61	34	)	)	PUNCT
afs-46512	61	35	of	of	ADP
afs-46512	61	36	the	the	DET
afs-46512	61	37	reads	read	NOUN
afs-46512	61	38	in	in	ADP
afs-46512	61	39	the	the	DET
afs-46512	61	40	s48	s48	NOUN
afs-46512	61	41	and	and	CCONJ
afs-46512	61	42	11.5	11.5	NUM
afs-46512	61	43	%	%	NOUN
afs-46512	61	44	(	(	PUNCT
afs-46512	61	45	3691546	3691546	NUM
afs-46512	61	46	)	)	PUNCT
afs-46512	61	47	of	of	ADP
afs-46512	61	48	the	the	DET
afs-46512	61	49	reads	read	NOUN
afs-46512	61	50	in	in	ADP
afs-46512	61	51	the	the	DET
afs-46512	61	52	s50	s50	NOUN
afs-46512	61	53	,	,	PUNCT
afs-46512	61	54	respectively	respectively	ADV
afs-46512	61	55	.	.	PUNCT
afs-46512	62	1	inha	inha	NOUN
afs-46512	62	2	,	,	PUNCT
afs-46512	62	3	a	a	DET
afs-46512	62	4	candidate	candidate	NOUN
afs-46512	62	5	gene	gene	NOUN
afs-46512	62	6	for	for	ADP
afs-46512	62	7	fertility	fertility	NOUN
afs-46512	62	8	and	and	CCONJ
afs-46512	62	9	serpine2	serpine2	PROPN
afs-46512	62	10	,	,	PUNCT
afs-46512	62	11	a	a	DET
afs-46512	62	12	proposed	propose	VERB
afs-46512	62	13	candidate	candidate	NOUN
afs-46512	62	14	gene	gene	NOUN
afs-46512	62	15	for	for	ADP
afs-46512	62	16	out	out	ADV
afs-46512	62	17	-	-	PUNCT
afs-46512	62	18	of	of	ADP
afs-46512	62	19	-	-	PUNCT
afs-46512	62	20	season	season	NOUN
afs-46512	62	21	breeding	breeding	NOUN
afs-46512	62	22	,	,	PUNCT
afs-46512	62	23	were	be	AUX
afs-46512	62	24	the	the	DET
afs-46512	62	25	two	two	NUM
afs-46512	62	26	exceptional	exceptional	ADV
afs-46512	62	27	highly	highly	ADV
afs-46512	62	28	expressed	express	VERB
afs-46512	62	29	genes	gene	NOUN
afs-46512	62	30	in	in	ADP
afs-46512	62	31	s50	s50	NOUN
afs-46512	62	32	.	.	PUNCT
afs-46512	63	1	out	out	ADP
afs-46512	63	2	of	of	ADP
afs-46512	63	3	14875	14875	NUM
afs-46512	63	4	ensembl	ensembl	NOUN
afs-46512	63	5	genes	gene	NOUN
afs-46512	63	6	expressed	express	VERB
afs-46512	63	7	in	in	ADP
afs-46512	63	8	this	this	DET
afs-46512	63	9	study	study	NOUN
afs-46512	63	10	2261	2261	NUM
afs-46512	63	11	did	do	AUX
afs-46512	63	12	not	not	PART
afs-46512	63	13	have	have	VERB
afs-46512	63	14	genes	gene	NOUN
afs-46512	63	15	names	name	NOUN
afs-46512	63	16	.	.	PUNCT
afs-46512	64	1	we	we	PRON
afs-46512	64	2	converted	convert	VERB
afs-46512	64	3	ids	id	NOUN
afs-46512	64	4	with	with	ADP
afs-46512	64	5	missing	miss	VERB
afs-46512	64	6	gene	gene	NOUN
afs-46512	64	7	names	name	NOUN
afs-46512	64	8	into	into	ADP
afs-46512	64	9	refseq	refseq	NOUN
afs-46512	64	10	protein	protein	NOUN
afs-46512	64	11	i	i	NOUN
afs-46512	64	12	d	d	NOUN
afs-46512	64	13	using	use	VERB
afs-46512	64	14	biomart	biomart	NOUN
afs-46512	64	15	and	and	CCONJ
afs-46512	64	16	extracted	extract	VERB
afs-46512	64	17	the	the	DET
afs-46512	64	18	corresponding	correspond	VERB
afs-46512	64	19	gene	gene	NOUN
afs-46512	64	20	names	name	NOUN
afs-46512	64	21	from	from	ADP
afs-46512	64	22	the	the	DET
afs-46512	64	23	refseq	refseq	NOUN
afs-46512	64	24	database	database	NOUN
afs-46512	64	25	.	.	PUNCT
afs-46512	65	1	we	we	PRON
afs-46512	65	2	were	be	AUX
afs-46512	65	3	able	able	ADJ
afs-46512	65	4	to	to	PART
afs-46512	65	5	find	find	VERB
afs-46512	65	6	gene	gene	NOUN
afs-46512	65	7	names	name	NOUN
afs-46512	65	8	for	for	ADP
afs-46512	65	9	1465	1465	NUM
afs-46512	65	10	ensembl	ensembl	PROPN
afs-46512	65	11	ids	id	NOUN
afs-46512	65	12	including	include	VERB
afs-46512	65	13	562	562	NUM
afs-46512	65	14	genes	gene	NOUN
afs-46512	65	15	with	with	ADP
afs-46512	65	16	uncertain	uncertain	ADJ
afs-46512	65	17	functions	function	NOUN
afs-46512	65	18	(	(	PUNCT
afs-46512	65	19	those	those	PRON
afs-46512	65	20	starting	start	VERB
afs-46512	65	21	with	with	ADP
afs-46512	65	22	loc	loc	NOUN
afs-46512	65	23	and	and	CCONJ
afs-46512	65	24	202	202	NUM
afs-46512	65	25	duplicated	duplicate	VERB
afs-46512	65	26	ids	id	NOUN
afs-46512	65	27	)	)	PUNCT
afs-46512	65	28	.	.	PUNCT
afs-46512	66	1	gene	gene	NOUN
afs-46512	66	2	annotation	annotation	NOUN
afs-46512	66	3	genes	gene	NOUN
afs-46512	66	4	expressed	express	VERB
afs-46512	66	5	in	in	ADP
afs-46512	66	6	the	the	DET
afs-46512	66	7	data	datum	NOUN
afs-46512	66	8	were	be	AUX
afs-46512	66	9	associated	associate	VERB
afs-46512	66	10	with	with	ADP
afs-46512	66	11	80261	80261	NUM
afs-46512	66	12	go	go	NOUN
afs-46512	66	13	terms	term	NOUN
afs-46512	66	14	which	which	PRON
afs-46512	66	15	can	can	AUX
afs-46512	66	16	be	be	AUX
afs-46512	66	17	classified	classify	VERB
afs-46512	66	18	into	into	ADP
afs-46512	66	19	three	three	NUM
afs-46512	66	20	categories	category	NOUN
afs-46512	66	21	biological	biological	ADJ
afs-46512	66	22	processes	process	NOUN
afs-46512	66	23	,	,	PUNCT
afs-46512	66	24	cellular	cellular	ADJ
afs-46512	66	25	component	component	NOUN
afs-46512	66	26	and	and	CCONJ
afs-46512	66	27	molecular	molecular	ADJ
afs-46512	66	28	functions	function	NOUN
afs-46512	66	29	(	(	PUNCT
afs-46512	66	30	fig	fig	NOUN
afs-46512	66	31	.	.	PUNCT
afs-46512	67	1	2	2	NUM
afs-46512	67	2	)	)	PUNCT
afs-46512	67	3	.	.	PUNCT
afs-46512	68	1	52	52	NUM
afs-46512	68	2	%	%	NOUN
afs-46512	68	3	25	25	NUM
afs-46512	68	4	%	%	NOUN
afs-46512	68	5	23	23	NUM
afs-46512	68	6	%	%	NOUN
afs-46512	68	7	biological	biological	ADJ
afs-46512	68	8	processes	process	NOUN
afs-46512	68	9	cellular	cellular	ADJ
afs-46512	68	10	components	component	NOUN
afs-46512	68	11	molecular	molecular	ADJ
afs-46512	68	12	function	function	NOUN
afs-46512	68	13	fig	fig	NOUN
afs-46512	68	14	.	.	PUNCT
afs-46512	69	1	2	2	X
afs-46512	69	2	.	.	X
afs-46512	69	3	gene	gene	NOUN
afs-46512	69	4	ontology	ontology	NOUN
afs-46512	69	5	categories	category	NOUN
afs-46512	69	6	.	.	PUNCT
afs-46512	70	1	the	the	DET
afs-46512	70	2	figure	figure	NOUN
afs-46512	70	3	represents	represent	VERB
afs-46512	70	4	the	the	DET
afs-46512	70	5	pie	pie	NOUN
afs-46512	70	6	chart	chart	NOUN
afs-46512	70	7	distribution	distribution	NOUN
afs-46512	70	8	of	of	ADP
afs-46512	70	9	three	three	NUM
afs-46512	70	10	go	go	NOUN
afs-46512	70	11	categories	category	NOUN
afs-46512	70	12	,	,	PUNCT
afs-46512	70	13	namely	namely	ADV
afs-46512	70	14	,	,	PUNCT
afs-46512	70	15	biological	biological	ADJ
afs-46512	70	16	processes	process	NOUN
afs-46512	70	17	,	,	PUNCT
afs-46512	70	18	cellular	cellular	ADJ
afs-46512	70	19	components	component	NOUN
afs-46512	70	20	and	and	CCONJ
afs-46512	70	21	molecular	molecular	ADJ
afs-46512	70	22	function	function	NOUN
afs-46512	70	23	.	.	PUNCT
afs-46512	71	1	all	all	DET
afs-46512	71	2	14875	14875	NUM
afs-46512	71	3	genes	gene	NOUN
afs-46512	71	4	expressed	express	VERB
afs-46512	71	5	in	in	ADP
afs-46512	71	6	the	the	DET
afs-46512	71	7	data	datum	NOUN
afs-46512	71	8	were	be	AUX
afs-46512	71	9	used	use	VERB
afs-46512	71	10	for	for	ADP
afs-46512	71	11	the	the	DET
afs-46512	71	12	ontology	ontology	NOUN
afs-46512	71	13	analysis	analysis	NOUN
afs-46512	71	14	.	.	PUNCT
afs-46512	72	1	agricultural	agricultural	ADJ
afs-46512	72	2	and	and	CCONJ
afs-46512	72	3	food	food	NOUN
afs-46512	72	4	science	science	PROPN
afs-46512	72	5	k.	k.	PROPN
afs-46512	72	6	pokharel	pokharel	PROPN
afs-46512	72	7	et	et	PROPN
afs-46512	72	8	al	al	PROPN
afs-46512	72	9	.	.	PROPN
afs-46512	73	1	(	(	PUNCT
afs-46512	73	2	2015	2015	NUM
afs-46512	73	3	)	)	PUNCT
afs-46512	73	4	24	24	NUM
afs-46512	73	5	:	:	PUNCT
afs-46512	73	6	1–9	1–9	NUM
afs-46512	73	7	4	4	NUM
afs-46512	73	8	the	the	DET
afs-46512	73	9	majority	majority	NOUN
afs-46512	73	10	of	of	ADP
afs-46512	73	11	these	these	DET
afs-46512	73	12	terms	term	NOUN
afs-46512	73	13	(	(	PUNCT
afs-46512	73	14	41663	41663	NUM
afs-46512	73	15	)	)	PUNCT
afs-46512	73	16	were	be	AUX
afs-46512	73	17	associated	associate	VERB
afs-46512	73	18	with	with	ADP
afs-46512	73	19	biological	biological	ADJ
afs-46512	73	20	processes	process	NOUN
afs-46512	73	21	whereas	whereas	SCONJ
afs-46512	73	22	19895	19895	NUM
afs-46512	73	23	terms	term	NOUN
afs-46512	73	24	were	be	AUX
afs-46512	73	25	related	relate	VERB
afs-46512	73	26	to	to	ADP
afs-46512	73	27	cellular	cellular	ADJ
afs-46512	73	28	components	component	NOUN
afs-46512	73	29	and	and	CCONJ
afs-46512	73	30	18703	18703	NUM
afs-46512	73	31	to	to	ADP
afs-46512	73	32	molecular	molecular	ADJ
afs-46512	73	33	function	function	NOUN
afs-46512	73	34	.	.	PUNCT
afs-46512	74	1	we	we	PRON
afs-46512	74	2	further	far	ADV
afs-46512	74	3	expanded	expand	VERB
afs-46512	74	4	three	three	NUM
afs-46512	74	5	main	main	ADJ
afs-46512	74	6	categories	category	NOUN
afs-46512	74	7	into	into	ADP
afs-46512	74	8	lower	low	ADJ
afs-46512	74	9	level	level	NOUN
afs-46512	74	10	classification	classification	NOUN
afs-46512	74	11	to	to	PART
afs-46512	74	12	understand	understand	VERB
afs-46512	74	13	what	what	PRON
afs-46512	74	14	kind	kind	NOUN
afs-46512	74	15	of	of	ADP
afs-46512	74	16	processes	process	NOUN
afs-46512	74	17	and	and	CCONJ
afs-46512	74	18	functions	function	NOUN
afs-46512	74	19	were	be	AUX
afs-46512	74	20	linked	link	VERB
afs-46512	74	21	with	with	ADP
afs-46512	74	22	the	the	DET
afs-46512	74	23	genes	gene	NOUN
afs-46512	74	24	expressed	express	VERB
afs-46512	74	25	in	in	ADP
afs-46512	74	26	the	the	DET
afs-46512	74	27	data	datum	NOUN
afs-46512	74	28	.	.	PUNCT
afs-46512	75	1	from	from	ADP
afs-46512	75	2	the	the	DET
afs-46512	75	3	list	list	NOUN
afs-46512	75	4	of	of	ADP
afs-46512	75	5	top	top	ADJ
afs-46512	75	6	ten	ten	NUM
afs-46512	75	7	terms	term	NOUN
afs-46512	75	8	in	in	ADP
afs-46512	75	9	each	each	DET
afs-46512	75	10	category	category	NOUN
afs-46512	75	11	,	,	PUNCT
afs-46512	75	12	it	it	PRON
afs-46512	75	13	was	be	AUX
afs-46512	75	14	found	find	VERB
afs-46512	75	15	that	that	SCONJ
afs-46512	75	16	protein	protein	NOUN
afs-46512	75	17	binding	bind	VERB
afs-46512	75	18	is	be	AUX
afs-46512	75	19	the	the	DET
afs-46512	75	20	most	most	ADV
afs-46512	75	21	common	common	ADJ
afs-46512	75	22	ontology	ontology	NOUN
afs-46512	75	23	term	term	NOUN
afs-46512	75	24	which	which	PRON
afs-46512	75	25	is	be	AUX
afs-46512	75	26	represented	represent	VERB
afs-46512	75	27	by	by	ADP
afs-46512	75	28	5572	5572	NUM
afs-46512	75	29	genes	gene	NOUN
afs-46512	75	30	(	(	PUNCT
afs-46512	75	31	table	table	NOUN
afs-46512	75	32	1	1	NUM
afs-46512	75	33	)	)	PUNCT
afs-46512	75	34	.	.	PUNCT
afs-46512	76	1	the	the	DET
afs-46512	76	2	analysis	analysis	NOUN
afs-46512	76	3	revealed	reveal	VERB
afs-46512	76	4	that	that	SCONJ
afs-46512	76	5	expressed	express	VERB
afs-46512	76	6	genes	gene	NOUN
afs-46512	76	7	were	be	AUX
afs-46512	76	8	mainly	mainly	ADV
afs-46512	76	9	involved	involve	VERB
afs-46512	76	10	in	in	ADP
afs-46512	76	11	differentially	differentially	ADV
afs-46512	76	12	regulating	regulate	VERB
afs-46512	76	13	transcription	transcription	NOUN
afs-46512	76	14	processes	process	NOUN
afs-46512	76	15	followed	follow	VERB
afs-46512	76	16	by	by	ADP
afs-46512	76	17	developmental	developmental	ADJ
afs-46512	76	18	processes	process	NOUN
afs-46512	76	19	such	such	ADJ
afs-46512	76	20	as	as	ADP
afs-46512	76	21	cell	cell	NOUN
afs-46512	76	22	proliferation	proliferation	NOUN
afs-46512	76	23	and	and	CCONJ
afs-46512	76	24	embryonic	embryonic	ADJ
afs-46512	76	25	development	development	NOUN
afs-46512	76	26	.	.	PUNCT
afs-46512	77	1	similarly	similarly	ADV
afs-46512	77	2	,	,	PUNCT
afs-46512	77	3	nucleus	nucleus	PROPN
afs-46512	77	4	is	be	AUX
afs-46512	77	5	the	the	DET
afs-46512	77	6	most	most	ADV
afs-46512	77	7	frequent	frequent	ADJ
afs-46512	77	8	cellular	cellular	ADJ
afs-46512	77	9	component	component	NOUN
afs-46512	77	10	term	term	NOUN
afs-46512	77	11	annotated	annotate	VERB
afs-46512	77	12	to	to	PART
afs-46512	77	13	expressed	express	VERB
afs-46512	77	14	genes	gene	NOUN
afs-46512	77	15	.	.	PUNCT
afs-46512	78	1	table	table	NOUN
afs-46512	78	2	1	1	NUM
afs-46512	78	3	.	.	PUNCT
afs-46512	78	4	gene	gene	NOUN
afs-46512	78	5	ontology	ontology	NOUN
afs-46512	78	6	analysis	analysis	NOUN
afs-46512	78	7	.	.	PUNCT
afs-46512	79	1	the	the	DET
afs-46512	79	2	table	table	NOUN
afs-46512	79	3	represents	represent	VERB
afs-46512	79	4	top	top	ADJ
afs-46512	79	5	ten	ten	NUM
afs-46512	79	6	go	go	NOUN
afs-46512	79	7	terms	term	NOUN
afs-46512	79	8	for	for	ADP
afs-46512	79	9	biological	biological	ADJ
afs-46512	79	10	processes	process	NOUN
afs-46512	79	11	,	,	PUNCT
afs-46512	79	12	cellular	cellular	ADJ
afs-46512	79	13	component	component	NOUN
afs-46512	79	14	and	and	CCONJ
afs-46512	79	15	molecular	molecular	ADJ
afs-46512	79	16	function	function	NOUN
afs-46512	79	17	.	.	PUNCT
afs-46512	80	1	no	no	DET
afs-46512	80	2	go	go	VERB
afs-46512	80	3	terms	term	NOUN
afs-46512	80	4	go	go	VERB
afs-46512	80	5	i	i	PROPN
afs-46512	81	1	d	d	PROPN
afs-46512	81	2	no	no	PROPN
afs-46512	81	3	.	.	PUNCT
afs-46512	82	1	of	of	ADP
afs-46512	82	2	genes	gene	NOUN
afs-46512	82	3	biological	biological	ADJ
afs-46512	82	4	process	process	NOUN
afs-46512	82	5	1	1	NUM
afs-46512	82	6	positive	positive	ADJ
afs-46512	82	7	regulation	regulation	NOUN
afs-46512	82	8	of	of	ADP
afs-46512	82	9	transcription	transcription	NOUN
afs-46512	82	10	from	from	ADP
afs-46512	82	11	rna	rna	NOUN
afs-46512	82	12	polymerase	polymerase	NOUN
afs-46512	82	13	ii	ii	NOUN
afs-46512	82	14	promoter	promoter	NOUN
afs-46512	82	15	go:0045944	go:0045944	PROPN
afs-46512	82	16	485	485	NUM
afs-46512	82	17	2	2	NUM
afs-46512	82	18	negative	negative	ADJ
afs-46512	82	19	regulation	regulation	NOUN
afs-46512	82	20	of	of	ADP
afs-46512	82	21	transcription	transcription	NOUN
afs-46512	82	22	from	from	ADP
afs-46512	82	23	rna	rna	NOUN
afs-46512	82	24	polymerase	polymerase	NOUN
afs-46512	82	25	ii	ii	PROPN
afs-46512	82	26	promoter	promoter	NOUN
afs-46512	82	27	go:0000122	go:0000122	PROPN
afs-46512	82	28	357	357	NUM
afs-46512	82	29	3	3	NUM
afs-46512	82	30	positive	positive	ADJ
afs-46512	82	31	regulation	regulation	NOUN
afs-46512	82	32	of	of	ADP
afs-46512	82	33	transcription	transcription	NOUN
afs-46512	82	34	,	,	PUNCT
afs-46512	82	35	dna	dna	NOUN
afs-46512	82	36	-	-	PUNCT
afs-46512	82	37	dependent	dependent	ADJ
afs-46512	82	38	go:0045893	go:0045893	NUM
afs-46512	82	39	349	349	NUM
afs-46512	82	40	4	4	NUM
afs-46512	82	41	negative	negative	ADJ
afs-46512	82	42	regulation	regulation	NOUN
afs-46512	82	43	of	of	ADP
afs-46512	82	44	transcription	transcription	NOUN
afs-46512	82	45	,	,	PUNCT
afs-46512	82	46	dna	dna	NOUN
afs-46512	82	47	-	-	PUNCT
afs-46512	82	48	dependent	dependent	ADJ
afs-46512	82	49	go:0045892	go:0045892	ADJ
afs-46512	82	50	297	297	NUM
afs-46512	82	51	5	5	NUM
afs-46512	82	52	protein	protein	NOUN
afs-46512	82	53	phosphorylation	phosphorylation	NOUN
afs-46512	82	54	go:006468	go:006468	VERB
afs-46512	82	55	240	240	NUM
afs-46512	82	56	6	6	NUM
afs-46512	82	57	regulation	regulation	NOUN
afs-46512	82	58	of	of	ADP
afs-46512	82	59	transcription	transcription	NOUN
afs-46512	82	60	,	,	PUNCT
afs-46512	82	61	dna	dna	NOUN
afs-46512	82	62	-	-	PUNCT
afs-46512	82	63	dependent	dependent	ADJ
afs-46512	82	64	go:0006355	go:0006355	ADP
afs-46512	82	65	222	222	NUM
afs-46512	82	66	7	7	NUM
afs-46512	82	67	negative	negative	ADJ
afs-46512	82	68	regulation	regulation	NOUN
afs-46512	82	69	of	of	ADP
afs-46512	82	70	cell	cell	NOUN
afs-46512	82	71	proliferation	proliferation	NOUN
afs-46512	82	72	go:0008285	go:0008285	PROPN
afs-46512	83	1	216	216	NUM
afs-46512	83	2	8	8	NUM
afs-46512	83	3	negative	negative	ADJ
afs-46512	83	4	regulation	regulation	NOUN
afs-46512	83	5	of	of	ADP
afs-46512	83	6	apoptotic	apoptotic	ADJ
afs-46512	83	7	process	process	NOUN
afs-46512	83	8	go:0043066	go:0043066	PROPN
afs-46512	83	9	206	206	NUM
afs-46512	83	10	9	9	NUM
afs-46512	83	11	in	in	ADP
afs-46512	83	12	utero	utero	ADJ
afs-46512	83	13	embryonic	embryonic	ADJ
afs-46512	83	14	development	development	NOUN
afs-46512	83	15	go:0001701	go:0001701	VERB
afs-46512	83	16	205	205	NUM
afs-46512	83	17	10	10	NUM
afs-46512	83	18	positive	positive	ADJ
afs-46512	83	19	regulation	regulation	NOUN
afs-46512	83	20	of	of	ADP
afs-46512	83	21	cell	cell	NOUN
afs-46512	83	22	proliferation	proliferation	NOUN
afs-46512	83	23	go:0008284	go:0008284	PROPN
afs-46512	83	24	200	200	NUM
afs-46512	83	25	cellular	cellular	ADJ
afs-46512	83	26	component	component	NOUN
afs-46512	83	27	1	1	NUM
afs-46512	83	28	nucleus	nucleus	NOUN
afs-46512	83	29	go:0005634	go:0005634	NOUN
afs-46512	83	30	2442	2442	NUM
afs-46512	83	31	2	2	NUM
afs-46512	83	32	cytoplasm	cytoplasm	NOUN
afs-46512	83	33	go:0005737	go:0005737	PROPN
afs-46512	83	34	2375	2375	NUM
afs-46512	83	35	3	3	NUM
afs-46512	83	36	mitochondrion	mitochondrion	NOUN
afs-46512	83	37	go:0005739	go:0005739	PROPN
afs-46512	83	38	1048	1048	NUM
afs-46512	83	39	4	4	NUM
afs-46512	83	40	plasma	plasma	NOUN
afs-46512	83	41	membrane	membrane	NOUN
afs-46512	83	42	go:0005886	go:0005886	NOUN
afs-46512	83	43	938	938	NUM
afs-46512	83	44	5	5	NUM
afs-46512	83	45	cytosol	cytosol	NOUN
afs-46512	83	46	go:0005829	go:0005829	NUM
afs-46512	83	47	455	455	NUM
afs-46512	83	48	6	6	NUM
afs-46512	83	49	membrane	membrane	NOUN
afs-46512	83	50	go:0016020	go:0016020	ADP
afs-46512	83	51	437	437	NUM
afs-46512	83	52	7	7	NUM
afs-46512	83	53	golgi	golgi	NOUN
afs-46512	83	54	apparatus	apparatus	NOUN
afs-46512	83	55	go:0005794	go:0005794	PROPN
afs-46512	83	56	394	394	NUM
afs-46512	83	57	8	8	NUM
afs-46512	83	58	nucleolus	nucleolus	NOUN
afs-46512	83	59	go:0005730	go:0005730	PROPN
afs-46512	83	60	369	369	NUM
afs-46512	83	61	9	9	NUM
afs-46512	83	62	endoplasmic	endoplasmic	ADJ
afs-46512	83	63	reticulum	reticulum	NOUN
afs-46512	83	64	go:0005783	go:0005783	PUNCT
afs-46512	83	65	346	346	NUM
afs-46512	83	66	10	10	NUM
afs-46512	83	67	centrosome	centrosome	NOUN
afs-46512	83	68	go:0005813	go:0005813	NOUN
afs-46512	83	69	289	289	NUM
afs-46512	83	70	molecular	molecular	ADJ
afs-46512	83	71	function	function	NOUN
afs-46512	83	72	1	1	NUM
afs-46512	83	73	protein	protein	NOUN
afs-46512	83	74	binding	bind	VERB
afs-46512	83	75	go:0005515	go:0005515	NOUN
afs-46512	83	76	5572	5572	NUM
afs-46512	83	77	2	2	NUM
afs-46512	83	78	dna	dna	NOUN
afs-46512	83	79	binding	bind	VERB
afs-46512	83	80	go:0003677	go:0003677	PROPN
afs-46512	83	81	376	376	NUM
afs-46512	83	82	3	3	NUM
afs-46512	83	83	protein	protein	NOUN
afs-46512	83	84	homodimerization	homodimerization	NOUN
afs-46512	83	85	activity	activity	NOUN
afs-46512	83	86	go:0042803	go:0042803	VERB
afs-46512	83	87	351	351	NUM
afs-46512	83	88	4	4	NUM
afs-46512	83	89	identical	identical	ADJ
afs-46512	83	90	protein	protein	NOUN
afs-46512	83	91	binding	bind	VERB
afs-46512	83	92	go:0042802	go:0042802	DET
afs-46512	83	93	344	344	NUM
afs-46512	83	94	5	5	NUM
afs-46512	83	95	sequence	sequence	NOUN
afs-46512	83	96	-	-	PUNCT
afs-46512	83	97	specific	specific	ADJ
afs-46512	83	98	dna	dna	NOUN
afs-46512	83	99	binding	bind	VERB
afs-46512	83	100	transcription	transcription	NOUN
afs-46512	83	101	factor	factor	NOUN
afs-46512	83	102	activity	activity	NOUN
afs-46512	83	103	go:0003700	go:0003700	VERB
afs-46512	83	104	242	242	NUM
afs-46512	83	105	6	6	NUM
afs-46512	83	106	chromatin	chromatin	NOUN
afs-46512	83	107	binding	bind	VERB
afs-46512	83	108	go:0003682	go:0003682	ADP
afs-46512	83	109	221	221	NUM
afs-46512	83	110	7	7	NUM
afs-46512	83	111	protein	protein	NOUN
afs-46512	83	112	kinase	kinase	NOUN
afs-46512	83	113	binding	bind	VERB
afs-46512	83	114	go:0019901	go:0019901	PROPN
afs-46512	83	115	191	191	NUM
afs-46512	83	116	8	8	NUM
afs-46512	83	117	transcription	transcription	NOUN
afs-46512	83	118	factor	factor	NOUN
afs-46512	83	119	binding	bind	VERB
afs-46512	83	120	go:0008134	go:0008134	PROPN
afs-46512	83	121	163	163	NUM
afs-46512	83	122	9	9	NUM
afs-46512	83	123	protein	protein	NOUN
afs-46512	83	124	heterodimerization	heterodimerization	NOUN
afs-46512	83	125	activity	activity	NOUN
afs-46512	83	126	go:0046982	go:0046982	PROPN
afs-46512	83	127	162	162	NUM
afs-46512	83	128	10	10	NUM
afs-46512	83	129	sequence	sequence	NOUN
afs-46512	83	130	-	-	PUNCT
afs-46512	83	131	specific	specific	ADJ
afs-46512	83	132	dna	dna	NOUN
afs-46512	83	133	binding	bind	VERB
afs-46512	83	134	go:0043565	go:0043565	NUM
afs-46512	83	135	160	160	NUM
afs-46512	83	136	agricultural	agricultural	ADJ
afs-46512	83	137	and	and	CCONJ
afs-46512	83	138	food	food	NOUN
afs-46512	83	139	science	science	PROPN
afs-46512	83	140	k.	k.	PROPN
afs-46512	83	141	pokharel	pokharel	PROPN
afs-46512	83	142	et	et	PROPN
afs-46512	83	143	al	al	PROPN
afs-46512	83	144	.	.	PROPN
afs-46512	84	1	(	(	PUNCT
afs-46512	84	2	2015	2015	NUM
afs-46512	84	3	)	)	PUNCT
afs-46512	84	4	24	24	NUM
afs-46512	84	5	:	:	PUNCT
afs-46512	84	6	1–9	1–9	NUM
afs-46512	84	7	5	5	NUM
afs-46512	84	8	the	the	DET
afs-46512	84	9	obtained	obtain	VERB
afs-46512	84	10	transcripts	transcript	NOUN
afs-46512	84	11	and	and	CCONJ
afs-46512	84	12	genes	gene	NOUN
afs-46512	84	13	were	be	AUX
afs-46512	84	14	related	relate	VERB
afs-46512	84	15	to	to	ADP
afs-46512	84	16	129	129	NUM
afs-46512	84	17	kegg	kegg	NOUN
afs-46512	84	18	pathways	pathway	NOUN
afs-46512	84	19	.	.	PUNCT
afs-46512	85	1	table	table	NOUN
afs-46512	85	2	2	2	NUM
afs-46512	85	3	shows	show	VERB
afs-46512	85	4	the	the	DET
afs-46512	85	5	ten	ten	NUM
afs-46512	85	6	most	most	ADV
afs-46512	85	7	abundant	abundant	ADJ
afs-46512	85	8	pathways	pathway	NOUN
afs-46512	85	9	with	with	ADP
afs-46512	85	10	corresponding	corresponding	ADJ
afs-46512	85	11	number	number	NOUN
afs-46512	85	12	of	of	ADP
afs-46512	85	13	sequences	sequence	NOUN
afs-46512	85	14	and	and	CCONJ
afs-46512	85	15	enzymes	enzyme	NOUN
afs-46512	85	16	.	.	PUNCT
afs-46512	86	1	the	the	DET
afs-46512	86	2	results	result	NOUN
afs-46512	86	3	indicated	indicate	VERB
afs-46512	86	4	that	that	SCONJ
afs-46512	86	5	the	the	DET
afs-46512	86	6	purine	purine	NOUN
afs-46512	86	7	metabolism	metabolism	NOUN
afs-46512	86	8	pathway	pathway	NOUN
afs-46512	86	9	comprised	comprise	VERB
afs-46512	86	10	the	the	DET
afs-46512	86	11	highest	high	ADJ
afs-46512	86	12	number	number	NOUN
afs-46512	86	13	of	of	ADP
afs-46512	86	14	sequences	sequence	NOUN
afs-46512	86	15	(	(	PUNCT
afs-46512	86	16	566	566	NUM
afs-46512	86	17	in	in	ADP
afs-46512	86	18	the	the	DET
afs-46512	86	19	s48	s48	NOUN
afs-46512	86	20	;	;	PUNCT
afs-46512	86	21	531	531	NUM
afs-46512	86	22	in	in	ADP
afs-46512	86	23	the	the	DET
afs-46512	86	24	s50	s50	NOUN
afs-46512	86	25	)	)	PUNCT
afs-46512	86	26	and	and	CCONJ
afs-46512	86	27	enzymes	enzyme	NOUN
afs-46512	86	28	(	(	PUNCT
afs-46512	86	29	58	58	NUM
afs-46512	86	30	in	in	ADP
afs-46512	86	31	the	the	DET
afs-46512	86	32	s48	s48	NOUN
afs-46512	86	33	;	;	PUNCT
afs-46512	86	34	54	54	NUM
afs-46512	86	35	in	in	ADP
afs-46512	86	36	the	the	DET
afs-46512	86	37	s50	s50	NOUN
afs-46512	86	38	)	)	PUNCT
afs-46512	86	39	in	in	ADP
afs-46512	86	40	both	both	DET
afs-46512	86	41	samples	sample	NOUN
afs-46512	86	42	.	.	PUNCT
afs-46512	87	1	the	the	DET
afs-46512	87	2	number	number	NOUN
afs-46512	87	3	of	of	ADP
afs-46512	87	4	enzymes	enzyme	NOUN
afs-46512	87	5	in	in	ADP
afs-46512	87	6	most	most	ADJ
afs-46512	87	7	of	of	ADP
afs-46512	87	8	the	the	DET
afs-46512	87	9	pathways	pathway	NOUN
afs-46512	87	10	was	be	AUX
afs-46512	87	11	same	same	ADJ
afs-46512	87	12	although	although	SCONJ
afs-46512	87	13	the	the	DET
afs-46512	87	14	number	number	NOUN
afs-46512	87	15	of	of	ADP
afs-46512	87	16	sequences	sequence	NOUN
afs-46512	87	17	was	be	AUX
afs-46512	87	18	different	different	ADJ
afs-46512	87	19	.	.	PUNCT
afs-46512	88	1	altogether	altogether	ADV
afs-46512	88	2	5606	5606	NUM
afs-46512	88	3	unknown	unknown	ADJ
afs-46512	88	4	transcripts	transcript	NOUN
afs-46512	88	5	were	be	AUX
afs-46512	88	6	present	present	ADJ
afs-46512	88	7	in	in	ADP
afs-46512	88	8	the	the	DET
afs-46512	88	9	data	datum	NOUN
afs-46512	88	10	with	with	ADP
afs-46512	88	11	3060	3060	NUM
afs-46512	88	12	sequences	sequence	NOUN
afs-46512	88	13	known	know	VERB
afs-46512	88	14	in	in	ADP
afs-46512	88	15	other	other	ADJ
afs-46512	88	16	species	specie	NOUN
afs-46512	88	17	and	and	CCONJ
afs-46512	88	18	the	the	DET
afs-46512	88	19	rest	rest	NOUN
afs-46512	88	20	2546	2546	NUM
afs-46512	88	21	did	do	AUX
afs-46512	88	22	not	not	PART
afs-46512	88	23	match	match	VERB
afs-46512	88	24	any	any	DET
afs-46512	88	25	sequences	sequence	NOUN
afs-46512	88	26	in	in	ADP
afs-46512	88	27	the	the	DET
afs-46512	88	28	non	non	ADJ
afs-46512	88	29	-	-	ADJ
afs-46512	88	30	redundant	redundant	ADJ
afs-46512	88	31	(	(	PUNCT
afs-46512	88	32	nr	nr	NOUN
afs-46512	88	33	)	)	PUNCT
afs-46512	88	34	sequence	sequence	NOUN
afs-46512	88	35	database	database	NOUN
afs-46512	88	36	.	.	PUNCT
afs-46512	89	1	out	out	ADP
afs-46512	89	2	of	of	ADP
afs-46512	89	3	3060	3060	NUM
afs-46512	89	4	transcripts	transcript	NOUN
afs-46512	89	5	that	that	PRON
afs-46512	89	6	shared	share	VERB
afs-46512	89	7	sequence	sequence	NOUN
afs-46512	89	8	similarity	similarity	NOUN
afs-46512	89	9	with	with	ADP
afs-46512	89	10	genes	gene	NOUN
afs-46512	89	11	found	find	VERB
afs-46512	89	12	in	in	ADP
afs-46512	89	13	other	other	ADJ
afs-46512	89	14	species	specie	NOUN
afs-46512	89	15	,	,	PUNCT
afs-46512	89	16	gene	gene	NOUN
afs-46512	89	17	ontology	ontology	NOUN
afs-46512	89	18	terms	term	NOUN
afs-46512	89	19	were	be	AUX
afs-46512	89	20	available	available	ADJ
afs-46512	89	21	for	for	ADP
afs-46512	89	22	374	374	NUM
afs-46512	89	23	transcripts	transcript	NOUN
afs-46512	89	24	.	.	PUNCT
afs-46512	90	1	interestingly	interestingly	ADV
afs-46512	90	2	,	,	PUNCT
afs-46512	90	3	blast	blast	NOUN
afs-46512	90	4	searching	searching	NOUN
afs-46512	90	5	showed	show	VERB
afs-46512	90	6	that	that	SCONJ
afs-46512	90	7	as	as	ADV
afs-46512	90	8	many	many	ADJ
afs-46512	90	9	as	as	ADP
afs-46512	90	10	225	225	NUM
afs-46512	90	11	transcripts	transcript	NOUN
afs-46512	90	12	were	be	AUX
afs-46512	90	13	part	part	NOUN
afs-46512	90	14	of	of	ADP
afs-46512	90	15	the	the	DET
afs-46512	90	16	orf	orf	PROPN
afs-46512	90	17	virus	virus	PROPN
afs-46512	90	18	(	(	PUNCT
afs-46512	90	19	orfv	orfv	PROPN
afs-46512	90	20	)	)	PUNCT
afs-46512	90	21	genome	genome	NOUN
afs-46512	90	22	(	(	PUNCT
afs-46512	90	23	fig	fig	NOUN
afs-46512	90	24	.	.	PUNCT
afs-46512	91	1	2	2	NUM
afs-46512	91	2	)	)	PUNCT
afs-46512	91	3	.	.	PUNCT
afs-46512	92	1	in	in	ADP
afs-46512	92	2	the	the	DET
afs-46512	92	3	list	list	NOUN
afs-46512	92	4	of	of	ADP
afs-46512	92	5	transcripts	transcript	NOUN
afs-46512	92	6	,	,	PUNCT
afs-46512	92	7	the	the	DET
afs-46512	92	8	orfv	orfv	NOUN
afs-46512	92	9	was	be	AUX
afs-46512	92	10	the	the	DET
afs-46512	92	11	third	third	ADJ
afs-46512	92	12	most	most	ADV
afs-46512	92	13	common	common	ADJ
afs-46512	92	14	genome	genome	NOUN
afs-46512	92	15	after	after	ADP
afs-46512	92	16	bovine	bovine	NOUN
afs-46512	92	17	and	and	CCONJ
afs-46512	92	18	yak	yak	NOUN
afs-46512	92	19	.	.	PUNCT
afs-46512	93	1	presence	presence	NOUN
afs-46512	93	2	of	of	ADP
afs-46512	93	3	the	the	DET
afs-46512	93	4	viral	viral	ADJ
afs-46512	93	5	genes	gene	NOUN
afs-46512	93	6	was	be	AUX
afs-46512	93	7	verified	verify	VERB
afs-46512	93	8	using	use	VERB
afs-46512	93	9	blast	blast	NOUN
afs-46512	93	10	search	search	NOUN
afs-46512	93	11	for	for	ADP
afs-46512	93	12	each	each	DET
afs-46512	93	13	assembled	assemble	VERB
afs-46512	93	14	transcriptome	transcriptome	NOUN
afs-46512	93	15	(	(	PUNCT
afs-46512	93	16	s48	s48	NOUN
afs-46512	93	17	and	and	CCONJ
afs-46512	93	18	s50	s50	NOUN
afs-46512	93	19	)	)	PUNCT
afs-46512	93	20	separately	separately	ADV
afs-46512	93	21	.	.	PUNCT
afs-46512	94	1	fig	fig	NOUN
afs-46512	94	2	.	.	PUNCT
afs-46512	95	1	3	3	X
afs-46512	95	2	.	.	X
afs-46512	95	3	distribution	distribution	NOUN
afs-46512	95	4	of	of	ADP
afs-46512	95	5	unknown	unknown	ADJ
afs-46512	95	6	transcripts	transcript	NOUN
afs-46512	95	7	that	that	PRON
afs-46512	95	8	did	do	AUX
afs-46512	95	9	not	not	PART
afs-46512	95	10	align	align	VERB
afs-46512	95	11	to	to	ADP
afs-46512	95	12	the	the	DET
afs-46512	95	13	ovine	ovine	ADJ
afs-46512	95	14	genes	gene	NOUN
afs-46512	95	15	in	in	ADP
afs-46512	95	16	ensembl	ensembl	PROPN
afs-46512	95	17	database	database	NOUN
afs-46512	95	18	.	.	PUNCT
afs-46512	95	19	table	table	NOUN
afs-46512	96	1	2	2	NUM
afs-46512	96	2	.	.	PUNCT
afs-46512	96	3	kegg	kegg	NOUN
afs-46512	96	4	pathway	pathway	NOUN
afs-46512	96	5	analysis	analysis	NOUN
afs-46512	96	6	.	.	PUNCT
afs-46512	97	1	the	the	DET
afs-46512	97	2	table	table	NOUN
afs-46512	97	3	shows	show	VERB
afs-46512	97	4	top	top	ADJ
afs-46512	97	5	ten	ten	NUM
afs-46512	97	6	kegg	kegg	NOUN
afs-46512	97	7	pathways	pathway	NOUN
afs-46512	97	8	and	and	CCONJ
afs-46512	97	9	corresponding	corresponding	ADJ
afs-46512	97	10	number	number	NOUN
afs-46512	97	11	of	of	ADP
afs-46512	97	12	gene	gene	NOUN
afs-46512	97	13	sequences	sequence	NOUN
afs-46512	97	14	(	(	PUNCT
afs-46512	97	15	#	#	SYM
afs-46512	97	16	seqs	seq	NOUN
afs-46512	97	17	)	)	PUNCT
afs-46512	97	18	and	and	CCONJ
afs-46512	97	19	enzymes	enzyme	NOUN
afs-46512	97	20	(	(	PUNCT
afs-46512	97	21	#	#	SYM
afs-46512	97	22	enzs	enzs	NOUN
afs-46512	97	23	)	)	PUNCT
afs-46512	97	24	in	in	ADP
afs-46512	97	25	the	the	DET
afs-46512	97	26	data	datum	NOUN
afs-46512	97	27	.	.	PUNCT
afs-46512	98	1	pathways	pathway	NOUN
afs-46512	98	2	s48	s48	VERB
afs-46512	98	3	s50	s50	NOUN
afs-46512	98	4	#	#	NOUN
afs-46512	98	5	seqs	seq	NOUN
afs-46512	98	6	#	#	NOUN
afs-46512	98	7	enzs	enzs	NOUN
afs-46512	98	8	#	#	NOUN
afs-46512	98	9	seqs	seq	NOUN
afs-46512	98	10	#	#	NOUN
afs-46512	98	11	enzs	enzs	NOUN
afs-46512	98	12	purine	purine	NOUN
afs-46512	98	13	metabolism	metabolism	NOUN
afs-46512	98	14	566	566	NUM
afs-46512	98	15	58	58	NUM
afs-46512	98	16	531	531	NUM
afs-46512	98	17	54	54	NUM
afs-46512	98	18	arginine	arginine	NOUN
afs-46512	98	19	and	and	CCONJ
afs-46512	98	20	proline	proline	NOUN
afs-46512	98	21	metabolism	metabolism	NOUN
afs-46512	98	22	420	420	NUM
afs-46512	98	23	31	31	NUM
afs-46512	98	24	376	376	NUM
afs-46512	98	25	31	31	NUM
afs-46512	98	26	beta	beta	NOUN
afs-46512	98	27	-	-	PUNCT
afs-46512	98	28	alanine	alanine	NOUN
afs-46512	98	29	metabolism	metabolism	NOUN
afs-46512	98	30	385	385	NUM
afs-46512	98	31	17	17	NUM
afs-46512	98	32	331	331	NUM
afs-46512	98	33	17	17	NUM
afs-46512	98	34	pyrimidine	pyrimidine	NOUN
afs-46512	98	35	metabolism	metabolism	NOUN
afs-46512	98	36	234	234	NUM
afs-46512	98	37	37	37	NUM
afs-46512	98	38	227	227	NUM
afs-46512	98	39	38	38	NUM
afs-46512	98	40	phosphatidylinositol	phosphatidylinositol	NOUN
afs-46512	98	41	signalling	signal	VERB
afs-46512	98	42	system	system	NOUN
afs-46512	98	43	216	216	NUM
afs-46512	98	44	22	22	NUM
afs-46512	98	45	207	207	NUM
afs-46512	98	46	22	22	NUM
afs-46512	98	47	glycerophospholipid	glycerophospholipid	NOUN
afs-46512	98	48	metabolism	metabolism	NOUN
afs-46512	98	49	170	170	NUM
afs-46512	98	50	30	30	NUM
afs-46512	98	51	172	172	NUM
afs-46512	98	52	30	30	NUM
afs-46512	98	53	inositol	inositol	NOUN
afs-46512	98	54	phosphate	phosphate	NOUN
afs-46512	98	55	metabolism	metabolism	NOUN
afs-46512	98	56	165	165	NUM
afs-46512	98	57	25	25	NUM
afs-46512	98	58	152	152	NUM
afs-46512	98	59	25	25	NUM
afs-46512	98	60	glycerolipid	glycerolipid	ADJ
afs-46512	98	61	metabolism	metabolism	NOUN
afs-46512	98	62	114	114	NUM
afs-46512	98	63	16	16	NUM
afs-46512	98	64	119	119	NUM
afs-46512	98	65	16	16	NUM
afs-46512	98	66	lysine	lysine	NOUN
afs-46512	98	67	degradation	degradation	NOUN
afs-46512	98	68	110	110	NUM
afs-46512	98	69	17	17	NUM
afs-46512	98	70	104	104	NUM
afs-46512	98	71	18	18	NUM
afs-46512	98	72	sphingolipid	sphingolipid	NOUN
afs-46512	98	73	metabolism	metabolism	NOUN
afs-46512	98	74	109	109	NUM
afs-46512	98	75	21	21	NUM
afs-46512	98	76	99	99	NUM
afs-46512	98	77	21	21	NUM
afs-46512	98	78	agricultural	agricultural	ADJ
afs-46512	98	79	and	and	CCONJ
afs-46512	98	80	food	food	NOUN
afs-46512	98	81	science	science	PROPN
afs-46512	98	82	k.	k.	PROPN
afs-46512	98	83	pokharel	pokharel	PROPN
afs-46512	98	84	et	et	PROPN
afs-46512	98	85	al	al	PROPN
afs-46512	98	86	.	.	PROPN
afs-46512	99	1	(	(	PUNCT
afs-46512	99	2	2015	2015	NUM
afs-46512	99	3	)	)	PUNCT
afs-46512	99	4	24	24	NUM
afs-46512	99	5	:	:	PUNCT
afs-46512	99	6	1–9	1–9	NUM
afs-46512	99	7	6	6	NUM
afs-46512	99	8	analysis	analysis	NOUN
afs-46512	99	9	of	of	ADP
afs-46512	99	10	candidate	candidate	NOUN
afs-46512	99	11	genes	gene	NOUN
afs-46512	99	12	we	we	PRON
afs-46512	99	13	further	far	ADV
afs-46512	99	14	examined	examine	VERB
afs-46512	99	15	the	the	DET
afs-46512	99	16	expression	expression	NOUN
afs-46512	99	17	level	level	NOUN
afs-46512	99	18	of	of	ADP
afs-46512	99	19	the	the	DET
afs-46512	99	20	17	17	NUM
afs-46512	99	21	putative	putative	ADJ
afs-46512	99	22	candidate	candidate	NOUN
afs-46512	99	23	genes	gene	NOUN
afs-46512	99	24	,	,	PUNCT
afs-46512	99	25	ten	ten	NUM
afs-46512	99	26	for	for	ADP
afs-46512	99	27	fertility	fertility	NOUN
afs-46512	99	28	and	and	CCONJ
afs-46512	99	29	seven	seven	NUM
afs-46512	99	30	for	for	ADP
afs-46512	99	31	out	out	ADV
afs-46512	99	32	-	-	PUNCT
afs-46512	99	33	of	of	ADP
afs-46512	99	34	-	-	PUNCT
afs-46512	99	35	season	season	NOUN
afs-46512	99	36	breeding	breeding	NOUN
afs-46512	99	37	(	(	PUNCT
afs-46512	99	38	table	table	NOUN
afs-46512	99	39	3	3	NUM
afs-46512	99	40	)	)	PUNCT
afs-46512	99	41	.	.	PUNCT
afs-46512	100	1	genes	gene	NOUN
afs-46512	100	2	such	such	ADJ
afs-46512	100	3	as	as	ADP
afs-46512	100	4	inha	inha	NOUN
afs-46512	100	5	,	,	PUNCT
afs-46512	100	6	inhba	inhba	ADJ
afs-46512	100	7	and	and	CCONJ
afs-46512	100	8	serpine2	serpine2	NOUN
afs-46512	100	9	have	have	VERB
afs-46512	100	10	differential	differential	ADJ
afs-46512	100	11	mean	mean	NOUN
afs-46512	100	12	values	value	NOUN
afs-46512	100	13	and	and	CCONJ
afs-46512	100	14	seem	seem	VERB
afs-46512	100	15	to	to	PART
afs-46512	100	16	be	be	AUX
afs-46512	100	17	up	up	ADV
afs-46512	100	18	-	-	PUNCT
afs-46512	100	19	regulated	regulate	VERB
afs-46512	100	20	in	in	ADP
afs-46512	100	21	s50	s50	NOUN
afs-46512	100	22	.	.	PUNCT
afs-46512	101	1	however	however	ADV
afs-46512	101	2	,	,	PUNCT
afs-46512	101	3	we	we	PRON
afs-46512	101	4	were	be	AUX
afs-46512	101	5	unable	unable	ADJ
afs-46512	101	6	to	to	PART
afs-46512	101	7	generate	generate	VERB
afs-46512	101	8	any	any	DET
afs-46512	101	9	conclusions	conclusion	NOUN
afs-46512	101	10	regarding	regard	VERB
afs-46512	101	11	these	these	DET
afs-46512	101	12	genes	gene	NOUN
afs-46512	101	13	due	due	ADP
afs-46512	101	14	to	to	ADP
afs-46512	101	15	the	the	DET
afs-46512	101	16	limited	limited	ADJ
afs-46512	101	17	number	number	NOUN
afs-46512	101	18	of	of	ADP
afs-46512	101	19	samples	sample	NOUN
afs-46512	101	20	.	.	PUNCT
afs-46512	102	1	b4galnt2	b4galnt2	VERB
afs-46512	102	2	one	one	NUM
afs-46512	102	3	of	of	ADP
afs-46512	102	4	the	the	DET
afs-46512	102	5	candidate	candidate	NOUN
afs-46512	102	6	genes	gene	NOUN
afs-46512	102	7	for	for	ADP
afs-46512	102	8	high	high	ADJ
afs-46512	102	9	litter	litter	NOUN
afs-46512	102	10	size	size	NOUN
afs-46512	102	11	,	,	PUNCT
afs-46512	102	12	and	and	CCONJ
afs-46512	102	13	serpine2	serpine2	PROPN
afs-46512	102	14	,	,	PUNCT
afs-46512	102	15	another	another	DET
afs-46512	102	16	candidate	candidate	NOUN
afs-46512	102	17	gene	gene	NOUN
afs-46512	102	18	for	for	ADP
afs-46512	102	19	out	out	ADV
afs-46512	102	20	-	-	PUNCT
afs-46512	102	21	of	of	ADP
afs-46512	102	22	-	-	PUNCT
afs-46512	102	23	season	season	NOUN
afs-46512	102	24	breeding	breeding	NOUN
afs-46512	102	25	were	be	AUX
afs-46512	102	26	not	not	PART
afs-46512	102	27	expressed	express	VERB
afs-46512	102	28	in	in	ADP
afs-46512	102	29	the	the	DET
afs-46512	102	30	data	datum	NOUN
afs-46512	102	31	.	.	PUNCT
afs-46512	103	1	mutations	mutation	NOUN
afs-46512	103	2	in	in	ADP
afs-46512	103	3	gdf9	gdf9	PROPN
afs-46512	103	4	,	,	PUNCT
afs-46512	103	5	b4galnt2	b4galnt2	NOUN
afs-46512	103	6	,	,	PUNCT
afs-46512	103	7	bmpr1b	bmpr1b	PROPN
afs-46512	103	8	and	and	CCONJ
afs-46512	103	9	bmp15	bmp15	PROPN
afs-46512	103	10	,	,	PUNCT
afs-46512	103	11	have	have	AUX
afs-46512	103	12	been	be	AUX
afs-46512	103	13	shown	show	VERB
afs-46512	103	14	to	to	PART
afs-46512	103	15	affect	affect	VERB
afs-46512	103	16	litter	litter	NOUN
afs-46512	103	17	size	size	NOUN
afs-46512	103	18	and	and	CCONJ
afs-46512	103	19	species	species	NOUN
afs-46512	103	20	-	-	PUNCT
afs-46512	103	21	specific	specific	ADJ
afs-46512	103	22	rates	rate	NOUN
afs-46512	103	23	of	of	ADP
afs-46512	103	24	ovulation	ovulation	NOUN
afs-46512	103	25	(	(	PUNCT
afs-46512	103	26	davis	davis	PROPN
afs-46512	103	27	2005	2005	NUM
afs-46512	103	28	,	,	PUNCT
afs-46512	103	29	fogarty	fogarty	PROPN
afs-46512	103	30	2009	2009	NUM
afs-46512	103	31	,	,	PUNCT
afs-46512	103	32	demars	demar	NOUN
afs-46512	103	33	et	et	PROPN
afs-46512	103	34	al	al	PROPN
afs-46512	103	35	.	.	PROPN
afs-46512	103	36	2013	2013	NUM
afs-46512	103	37	,	,	PUNCT
afs-46512	103	38	våge	våge	VERB
afs-46512	103	39	et	et	PROPN
afs-46512	103	40	al	al	PROPN
afs-46512	103	41	.	.	PROPN
afs-46512	103	42	2013	2013	NUM
afs-46512	103	43	)	)	PUNCT
afs-46512	103	44	.	.	PUNCT
afs-46512	104	1	compared	compare	VERB
afs-46512	104	2	to	to	ADP
afs-46512	104	3	the	the	DET
afs-46512	104	4	ovine	ovine	ADJ
afs-46512	104	5	reference	reference	NOUN
afs-46512	104	6	genome	genome	NOUN
afs-46512	104	7	,	,	PUNCT
afs-46512	104	8	five	five	NUM
afs-46512	104	9	snp	snp	ADJ
afs-46512	104	10	mutations	mutation	NOUN
afs-46512	104	11	were	be	AUX
afs-46512	104	12	present	present	ADJ
afs-46512	104	13	in	in	ADP
afs-46512	104	14	gdf9	gdf9	PROPN
afs-46512	104	15	.	.	PUNCT
afs-46512	105	1	at	at	ADP
afs-46512	105	2	the	the	DET
afs-46512	105	3	amino	amino	NOUN
afs-46512	105	4	acid	acid	NOUN
afs-46512	105	5	level	level	NOUN
afs-46512	105	6	,	,	PUNCT
afs-46512	105	7	instead	instead	ADV
afs-46512	105	8	of	of	ADP
afs-46512	105	9	the	the	DET
afs-46512	105	10	v371	v371	PROPN
afs-46512	105	11	m	m	NOUN
afs-46512	105	12	mutation	mutation	NOUN
afs-46512	105	13	recently	recently	ADV
afs-46512	105	14	reported	report	VERB
afs-46512	105	15	by	by	ADP
afs-46512	105	16	våge	våge	NOUN
afs-46512	105	17	et	et	PROPN
afs-46512	105	18	al	al	PROPN
afs-46512	105	19	.	.	PROPN
afs-46512	106	1	(	(	PUNCT
afs-46512	106	2	2013	2013	NUM
afs-46512	106	3	)	)	PUNCT
afs-46512	106	4	,	,	PUNCT
afs-46512	106	5	we	we	PRON
afs-46512	106	6	found	find	VERB
afs-46512	106	7	the	the	DET
afs-46512	106	8	k241e	k241e	PROPN
afs-46512	106	9	substitution	substitution	NOUN
afs-46512	106	10	.	.	PUNCT
afs-46512	107	1	similarly	similarly	ADV
afs-46512	107	2	,	,	PUNCT
afs-46512	107	3	five	five	NUM
afs-46512	107	4	snps	snps	NOUN
afs-46512	107	5	were	be	AUX
afs-46512	107	6	detected	detect	VERB
afs-46512	107	7	in	in	ADP
afs-46512	107	8	the	the	DET
afs-46512	107	9	bmpr1b	bmpr1b	NOUN
afs-46512	107	10	gene	gene	NOUN
afs-46512	107	11	with	with	ADP
afs-46512	107	12	three	three	NUM
afs-46512	107	13	non	non	ADJ
afs-46512	107	14	-	-	ADJ
afs-46512	107	15	synonymous	synonymous	ADJ
afs-46512	107	16	mutations	mutation	NOUN
afs-46512	107	17	(	(	PUNCT
afs-46512	107	18	q249r	q249r	PROPN
afs-46512	107	19	,	,	PUNCT
afs-46512	107	20	k299e	k299e	PROPN
afs-46512	107	21	and	and	CCONJ
afs-46512	107	22	e461	e461	NUM
afs-46512	107	23	g	g	NOUN
afs-46512	107	24	)	)	PUNCT
afs-46512	107	25	.	.	PUNCT
afs-46512	108	1	however	however	ADV
afs-46512	108	2	,	,	PUNCT
afs-46512	108	3	the	the	DET
afs-46512	108	4	bmp15	bmp15	PROPN
afs-46512	108	5	gene	gene	NOUN
afs-46512	108	6	was	be	AUX
afs-46512	108	7	found	find	VERB
afs-46512	108	8	to	to	PART
afs-46512	108	9	be	be	AUX
afs-46512	108	10	monomorphic	monomorphic	ADJ
afs-46512	108	11	and	and	CCONJ
afs-46512	108	12	no	no	DET
afs-46512	108	13	causative	causative	ADJ
afs-46512	108	14	mutations	mutation	NOUN
afs-46512	108	15	were	be	AUX
afs-46512	108	16	detected	detect	VERB
afs-46512	108	17	in	in	ADP
afs-46512	108	18	the	the	DET
afs-46512	108	19	data	datum	NOUN
afs-46512	108	20	.	.	PUNCT
afs-46512	109	1	discussion	discussion	NOUN
afs-46512	109	2	the	the	DET
afs-46512	109	3	ovary	ovary	NOUN
afs-46512	109	4	is	be	AUX
afs-46512	109	5	one	one	NUM
afs-46512	109	6	of	of	ADP
afs-46512	109	7	the	the	DET
afs-46512	109	8	key	key	ADJ
afs-46512	109	9	tissues	tissue	NOUN
afs-46512	109	10	in	in	ADP
afs-46512	109	11	a	a	DET
afs-46512	109	12	complex	complex	ADJ
afs-46512	109	13	regulatory	regulatory	ADJ
afs-46512	109	14	network	network	NOUN
afs-46512	109	15	affecting	affect	VERB
afs-46512	109	16	fertility	fertility	NOUN
afs-46512	109	17	and	and	CCONJ
afs-46512	109	18	breeding	breeding	NOUN
afs-46512	109	19	in	in	ADP
afs-46512	109	20	mammalian	mammalian	ADJ
afs-46512	109	21	species	specie	NOUN
afs-46512	109	22	.	.	PUNCT
afs-46512	110	1	we	we	PRON
afs-46512	110	2	profiled	profile	VERB
afs-46512	110	3	ovarian	ovarian	ADJ
afs-46512	110	4	transcriptomes	transcriptome	NOUN
afs-46512	110	5	using	use	VERB
afs-46512	110	6	biopsies	biopsy	NOUN
afs-46512	110	7	of	of	ADP
afs-46512	110	8	two	two	NUM
afs-46512	110	9	ewes	ewe	NOUN
afs-46512	110	10	of	of	ADP
afs-46512	110	11	the	the	DET
afs-46512	110	12	native	native	ADJ
afs-46512	110	13	finnsheep	finnsheep	NOUN
afs-46512	110	14	,	,	PUNCT
afs-46512	110	15	one	one	NUM
afs-46512	110	16	of	of	ADP
afs-46512	110	17	the	the	DET
afs-46512	110	18	most	most	ADV
afs-46512	110	19	fertile	fertile	ADJ
afs-46512	110	20	sheep	sheep	NOUN
afs-46512	110	21	breeds	breed	NOUN
afs-46512	110	22	in	in	ADP
afs-46512	110	23	the	the	DET
afs-46512	110	24	world	world	NOUN
afs-46512	110	25	.	.	PUNCT
afs-46512	111	1	using	use	VERB
afs-46512	111	2	the	the	DET
afs-46512	111	3	recent	recent	ADJ
afs-46512	111	4	ensembl	ensembl	NOUN
afs-46512	111	5	annotation	annotation	NOUN
afs-46512	111	6	,	,	PUNCT
afs-46512	111	7	we	we	PRON
afs-46512	111	8	identified	identify	VERB
afs-46512	111	9	a	a	DET
afs-46512	111	10	total	total	NOUN
afs-46512	111	11	of	of	ADP
afs-46512	111	12	14875	14875	NUM
afs-46512	111	13	genes	gene	NOUN
afs-46512	111	14	expressed	express	VERB
afs-46512	111	15	in	in	ADP
afs-46512	111	16	the	the	DET
afs-46512	111	17	data	datum	NOUN
afs-46512	111	18	.	.	PUNCT
afs-46512	112	1	the	the	DET
afs-46512	112	2	genes	gene	NOUN
afs-46512	112	3	expressed	express	VERB
afs-46512	112	4	in	in	ADP
afs-46512	112	5	the	the	DET
afs-46512	112	6	data	datum	NOUN
afs-46512	112	7	represented	represent	VERB
afs-46512	112	8	the	the	DET
afs-46512	112	9	majority	majority	NOUN
afs-46512	112	10	of	of	ADP
afs-46512	112	11	the	the	DET
afs-46512	112	12	genes	gene	NOUN
afs-46512	112	13	found	find	VERB
afs-46512	112	14	in	in	ADP
afs-46512	112	15	ovaries	ovary	NOUN
afs-46512	112	16	of	of	ADP
afs-46512	112	17	other	other	ADJ
afs-46512	112	18	mammals	mammal	NOUN
afs-46512	112	19	such	such	ADJ
afs-46512	112	20	as	as	ADP
afs-46512	112	21	human	human	ADJ
afs-46512	112	22	and	and	CCONJ
afs-46512	112	23	mouse	mouse	NOUN
afs-46512	112	24	.	.	PUNCT
afs-46512	113	1	this	this	DET
afs-46512	113	2	result	result	NOUN
afs-46512	113	3	is	be	AUX
afs-46512	113	4	in	in	ADP
afs-46512	113	5	good	good	ADJ
afs-46512	113	6	agreement	agreement	NOUN
afs-46512	113	7	with	with	ADP
afs-46512	113	8	the	the	DET
afs-46512	113	9	recent	recent	ADJ
afs-46512	113	10	study	study	NOUN
afs-46512	113	11	by	by	ADP
afs-46512	113	12	bonnet	bonnet	NOUN
afs-46512	113	13	et	et	PROPN
afs-46512	113	14	al	al	PROPN
afs-46512	113	15	.	.	PROPN
afs-46512	114	1	(	(	PUNCT
afs-46512	114	2	2013	2013	NUM
afs-46512	114	3	)	)	PUNCT
afs-46512	114	4	,	,	PUNCT
afs-46512	114	5	where	where	SCONJ
afs-46512	114	6	15349	15349	NUM
afs-46512	114	7	genes	gene	NOUN
afs-46512	114	8	were	be	AUX
afs-46512	114	9	identified	identify	VERB
afs-46512	114	10	in	in	ADP
afs-46512	114	11	the	the	DET
afs-46512	114	12	sheep	sheep	NOUN
afs-46512	114	13	juvenile	juvenile	ADJ
afs-46512	114	14	ovary	ovary	NOUN
afs-46512	114	15	by	by	ADP
afs-46512	114	16	applying	apply	VERB
afs-46512	114	17	a	a	DET
afs-46512	114	18	laser	laser	NOUN
afs-46512	114	19	capture	capture	NOUN
afs-46512	114	20	dissection	dissection	NOUN
afs-46512	114	21	approach	approach	NOUN
afs-46512	114	22	.	.	PUNCT
afs-46512	115	1	due	due	ADP
afs-46512	115	2	to	to	ADP
afs-46512	115	3	smaller	small	ADJ
afs-46512	115	4	sample	sample	NOUN
afs-46512	115	5	size	size	NOUN
afs-46512	115	6	,	,	PUNCT
afs-46512	115	7	although	although	SCONJ
afs-46512	115	8	we	we	PRON
afs-46512	115	9	found	find	VERB
afs-46512	115	10	genes	gene	NOUN
afs-46512	115	11	which	which	PRON
afs-46512	115	12	were	be	AUX
afs-46512	115	13	differentially	differentially	ADV
afs-46512	115	14	expressed	express	VERB
afs-46512	115	15	between	between	ADP
afs-46512	115	16	two	two	NUM
afs-46512	115	17	samples	sample	NOUN
afs-46512	115	18	,	,	PUNCT
afs-46512	115	19	no	no	DET
afs-46512	115	20	further	further	ADJ
afs-46512	115	21	analysis	analysis	NOUN
afs-46512	115	22	were	be	AUX
afs-46512	115	23	done	do	VERB
afs-46512	115	24	.	.	PUNCT
afs-46512	116	1	however	however	ADV
afs-46512	116	2	,	,	PUNCT
afs-46512	116	3	these	these	DET
afs-46512	116	4	findings	finding	NOUN
afs-46512	116	5	will	will	AUX
afs-46512	116	6	be	be	AUX
afs-46512	116	7	considered	consider	VERB
afs-46512	116	8	in	in	ADP
afs-46512	116	9	future	future	ADJ
afs-46512	116	10	experiments	experiment	NOUN
afs-46512	116	11	.	.	PUNCT
afs-46512	117	1	the	the	DET
afs-46512	117	2	samples	sample	NOUN
afs-46512	117	3	were	be	AUX
afs-46512	117	4	collected	collect	VERB
afs-46512	117	5	during	during	ADP
afs-46512	117	6	the	the	DET
afs-46512	117	7	out	out	ADJ
afs-46512	117	8	-	-	PUNCT
afs-46512	117	9	of	of	ADP
afs-46512	117	10	-	-	PUNCT
afs-46512	117	11	season	season	NOUN
afs-46512	117	12	breeding	breeding	NOUN
afs-46512	117	13	period	period	NOUN
afs-46512	117	14	.	.	PUNCT
afs-46512	118	1	all	all	DET
afs-46512	118	2	six	six	NUM
afs-46512	118	3	candidate	candidate	NOUN
afs-46512	118	4	genes	gene	NOUN
afs-46512	118	5	ntrk2	ntrk2	NOUN
afs-46512	118	6	,	,	PUNCT
afs-46512	118	7	nid1	nid1	ADV
afs-46512	118	8	,	,	PUNCT
afs-46512	118	9	foxo1	foxo1	PROPN
afs-46512	118	10	,	,	PUNCT
afs-46512	118	11	htra1	htra1	PROPN
afs-46512	118	12	,	,	PUNCT
afs-46512	118	13	serpine2	serpine2	PROPN
afs-46512	118	14	,	,	PUNCT
afs-46512	118	15	ppap2b	ppap2b	PROPN
afs-46512	118	16	which	which	PRON
afs-46512	118	17	were	be	AUX
afs-46512	118	18	putatively	putatively	ADV
afs-46512	118	19	associated	associate	VERB
afs-46512	118	20	with	with	ADP
afs-46512	118	21	out	out	ADV
afs-46512	118	22	-	-	PUNCT
afs-46512	118	23	of	of	ADP
afs-46512	118	24	-	-	PUNCT
afs-46512	118	25	season	season	NOUN
afs-46512	118	26	breeding	breeding	NOUN
afs-46512	118	27	capability	capability	NOUN
afs-46512	118	28	(	(	PUNCT
afs-46512	118	29	chen	chen	PROPN
afs-46512	118	30	et	et	PROPN
afs-46512	118	31	al	al	PROPN
afs-46512	118	32	.	.	PROPN
afs-46512	118	33	2012	2012	NUM
afs-46512	118	34	)	)	PUNCT
afs-46512	118	35	were	be	AUX
afs-46512	118	36	expressed	express	VERB
afs-46512	118	37	in	in	ADP
afs-46512	118	38	the	the	DET
afs-46512	118	39	samples	sample	NOUN
afs-46512	118	40	.	.	PUNCT
afs-46512	119	1	these	these	DET
afs-46512	119	2	putative	putative	ADJ
afs-46512	119	3	genes	gene	NOUN
afs-46512	119	4	associated	associate	VERB
afs-46512	119	5	with	with	ADP
afs-46512	119	6	out	out	ADV
afs-46512	119	7	-	-	PUNCT
afs-46512	119	8	of	of	ADP
afs-46512	119	9	-	-	PUNCT
afs-46512	119	10	season	season	NOUN
afs-46512	119	11	breeding	breeding	NOUN
afs-46512	119	12	have	have	AUX
afs-46512	119	13	not	not	PART
afs-46512	119	14	yet	yet	ADV
afs-46512	119	15	been	be	AUX
afs-46512	119	16	well	well	ADV
afs-46512	119	17	supported	support	VERB
afs-46512	119	18	by	by	ADP
afs-46512	119	19	experimental	experimental	ADJ
afs-46512	119	20	validations	validation	NOUN
afs-46512	119	21	and	and	CCONJ
afs-46512	119	22	thus	thus	ADV
afs-46512	119	23	the	the	DET
afs-46512	119	24	results	result	NOUN
afs-46512	119	25	need	need	VERB
afs-46512	119	26	to	to	PART
afs-46512	119	27	be	be	AUX
afs-46512	119	28	supplemented	supplement	VERB
afs-46512	119	29	with	with	ADP
afs-46512	119	30	more	more	ADJ
afs-46512	119	31	samples	sample	NOUN
afs-46512	119	32	and	and	CCONJ
afs-46512	119	33	experimental	experimental	ADJ
afs-46512	119	34	studies	study	NOUN
afs-46512	119	35	.	.	PUNCT
afs-46512	120	1	in	in	ADP
afs-46512	120	2	addition	addition	NOUN
afs-46512	120	3	to	to	ADP
afs-46512	120	4	the	the	DET
afs-46512	120	5	genes	gene	NOUN
afs-46512	120	6	associated	associate	VERB
afs-46512	120	7	with	with	ADP
afs-46512	120	8	out	out	ADV
afs-46512	120	9	-	-	PUNCT
afs-46512	120	10	of	of	ADP
afs-46512	120	11	-	-	PUNCT
afs-46512	120	12	season	season	NOUN
afs-46512	120	13	breeding	breeding	NOUN
afs-46512	120	14	,	,	PUNCT
afs-46512	120	15	we	we	PRON
afs-46512	120	16	were	be	AUX
afs-46512	120	17	interested	interested	ADJ
afs-46512	120	18	in	in	ADP
afs-46512	120	19	the	the	DET
afs-46512	120	20	expression	expression	NOUN
afs-46512	120	21	patterns	pattern	NOUN
afs-46512	120	22	of	of	ADP
afs-46512	120	23	fertility	fertility	NOUN
afs-46512	120	24	genes	gene	NOUN
afs-46512	120	25	and	and	CCONJ
afs-46512	120	26	their	their	PRON
afs-46512	120	27	polymorphisms	polymorphism	NOUN
afs-46512	120	28	in	in	ADP
afs-46512	120	29	the	the	DET
afs-46512	120	30	finnsheep	finnsheep	NOUN
afs-46512	120	31	.	.	PUNCT
afs-46512	121	1	nine	nine	NUM
afs-46512	121	2	of	of	ADP
afs-46512	121	3	the	the	DET
afs-46512	121	4	ten	ten	NUM
afs-46512	121	5	putative	putative	ADJ
afs-46512	121	6	genes	gene	NOUN
afs-46512	121	7	(	(	PUNCT
afs-46512	121	8	gdf9	gdf9	PROPN
afs-46512	121	9	,	,	PUNCT
afs-46512	121	10	bmp15	bmp15	PROPN
afs-46512	121	11	,	,	PUNCT
afs-46512	121	12	bmpr1b	bmpr1b	NOUN
afs-46512	121	13	,	,	PUNCT
afs-46512	121	14	inha	inha	NOUN
afs-46512	121	15	,	,	PUNCT
afs-46512	121	16	inhba	inhba	NOUN
afs-46512	121	17	,	,	PUNCT
afs-46512	121	18	prlr	prlr	NOUN
afs-46512	121	19	,	,	PUNCT
afs-46512	121	20	fshr	fshr	NOUN
afs-46512	121	21	,	,	PUNCT
afs-46512	121	22	esr1	esr1	PROPN
afs-46512	121	23	,	,	PUNCT
afs-46512	121	24	esr2	esr2	PROPN
afs-46512	121	25	)	)	PUNCT
afs-46512	121	26	associated	associate	VERB
afs-46512	121	27	with	with	ADP
afs-46512	121	28	fertility	fertility	NOUN
afs-46512	121	29	were	be	AUX
afs-46512	121	30	expressed	express	VERB
afs-46512	121	31	in	in	ADP
afs-46512	121	32	both	both	DET
afs-46512	121	33	ewes	ewe	NOUN
afs-46512	121	34	,	,	PUNCT
afs-46512	121	35	but	but	CCONJ
afs-46512	121	36	the	the	DET
afs-46512	121	37	recently	recently	ADV
afs-46512	121	38	suggested	suggest	VERB
afs-46512	121	39	candidate	candidate	NOUN
afs-46512	121	40	gene	gene	NOUN
afs-46512	121	41	b4galnt2	b4galnt2	NOUN
afs-46512	121	42	was	be	AUX
afs-46512	121	43	not	not	PART
afs-46512	121	44	expressed	express	VERB
afs-46512	121	45	.	.	PUNCT
afs-46512	122	1	in	in	ADP
afs-46512	122	2	the	the	DET
afs-46512	122	3	two	two	NUM
afs-46512	122	4	samples	sample	NOUN
afs-46512	122	5	,	,	PUNCT
afs-46512	122	6	the	the	DET
afs-46512	122	7	causative	causative	ADJ
afs-46512	122	8	mutations	mutation	NOUN
afs-46512	122	9	at	at	ADP
afs-46512	122	10	the	the	DET
afs-46512	122	11	fertility	fertility	NOUN
afs-46512	122	12	genes	gene	NOUN
afs-46512	122	13	gdf9	gdf9	PROPN
afs-46512	122	14	,	,	PUNCT
afs-46512	122	15	bmp15	bmp15	PROPN
afs-46512	122	16	and	and	CCONJ
afs-46512	122	17	bmpr1b	bmpr1b	NOUN
afs-46512	122	18	affecting	affect	VERB
afs-46512	122	19	ovulation	ovulation	NOUN
afs-46512	122	20	rate	rate	NOUN
afs-46512	122	21	table	table	NOUN
afs-46512	122	22	3	3	NUM
afs-46512	122	23	.	.	PUNCT
afs-46512	122	24	expression	expression	NOUN
afs-46512	122	25	levels	level	NOUN
afs-46512	122	26	of	of	ADP
afs-46512	122	27	the	the	DET
afs-46512	122	28	candidate	candidate	NOUN
afs-46512	122	29	genes	gene	NOUN
afs-46512	122	30	.	.	PUNCT
afs-46512	123	1	the	the	DET
afs-46512	123	2	first	first	ADJ
afs-46512	123	3	nine	nine	NUM
afs-46512	123	4	genes	gene	NOUN
afs-46512	123	5	are	be	AUX
afs-46512	123	6	associated	associate	VERB
afs-46512	123	7	with	with	ADP
afs-46512	123	8	fertility	fertility	NOUN
afs-46512	123	9	and	and	CCONJ
afs-46512	123	10	the	the	DET
afs-46512	123	11	rest	rest	NOUN
afs-46512	123	12	with	with	ADP
afs-46512	123	13	outof	outof	PROPN
afs-46512	123	14	-	-	PUNCT
afs-46512	123	15	season	season	NOUN
afs-46512	123	16	breeding	breeding	NOUN
afs-46512	123	17	.	.	PUNCT
afs-46512	124	1	base	base	NOUN
afs-46512	124	2	mean	mean	PROPN
afs-46512	124	3	values	value	NOUN
afs-46512	124	4	are	be	AUX
afs-46512	124	5	the	the	DET
afs-46512	124	6	weighted	weight	VERB
afs-46512	124	7	mean	mean	ADJ
afs-46512	124	8	values	value	NOUN
afs-46512	124	9	computed	compute	VERB
afs-46512	124	10	by	by	ADP
afs-46512	124	11	deseq	deseq	NOUN
afs-46512	124	12	and	and	CCONJ
afs-46512	124	13	padj	padj	NOUN
afs-46512	124	14	is	be	AUX
afs-46512	124	15	the	the	DET
afs-46512	124	16	adjusted	adjust	VERB
afs-46512	124	17	p	p	NOUN
afs-46512	124	18	value	value	NOUN
afs-46512	124	19	.	.	PUNCT
afs-46512	125	1	genes	gene	NOUN
afs-46512	125	2	base	base	NOUN
afs-46512	125	3	mean	mean	VERB
afs-46512	125	4	values	value	NOUN
afs-46512	125	5	(	(	PUNCT
afs-46512	125	6	s48	s48	NOUN
afs-46512	125	7	)	)	PUNCT
afs-46512	125	8	base	base	NOUN
afs-46512	126	1	mean	mean	NOUN
afs-46512	126	2	values	value	NOUN
afs-46512	126	3	(	(	PUNCT
afs-46512	126	4	s50	s50	NOUN
afs-46512	126	5	)	)	PUNCT
afs-46512	126	6	padj	padj	NOUN
afs-46512	126	7	gdf9	gdf9	VERB
afs-46512	126	8	295.272	295.272	NUM
afs-46512	126	9	256.862	256.862	NUM
afs-46512	126	10	0.870	0.870	NUM
afs-46512	126	11	bmp15	bmp15	PROPN
afs-46512	126	12	25.041	25.041	NUM
afs-46512	126	13	41.213	41.213	NUM
afs-46512	126	14	1.646	1.646	NUM
afs-46512	126	15	bmpr1b	bmpr1b	NOUN
afs-46512	126	16	4695.13	4695.13	NUM
afs-46512	127	1	6711.946	6711.946	NOUN
afs-46512	127	2	1.429	1.429	NUM
afs-46512	127	3	inha	inha	NOUN
afs-46512	127	4	52004.372	52004.372	PROPN
afs-46512	127	5	544759.278	544759.278	NUM
afs-46512	127	6	10.475	10.475	NUM
afs-46512	127	7	inhba	inhba	NOUN
afs-46512	127	8	5912.7	5912.7	NUM
afs-46512	127	9	103335.0	103335.0	NUM
afs-46512	127	10	17.476	17.476	NUM
afs-46512	127	11	fshr	fshr	NOUN
afs-46512	127	12	1117.4	1117.4	NUM
afs-46512	127	13	3537.6	3537.6	NUM
afs-46512	127	14	3.166	3.166	NUM
afs-46512	127	15	esr1	esr1	PROPN
afs-46512	127	16	1487.8	1487.8	NUM
afs-46512	127	17	1417.5	1417.5	NUM
afs-46512	127	18	0.953	0.953	NUM
afs-46512	127	19	esr2	esr2	NOUN
afs-46512	127	20	430.9	430.9	NUM
afs-46512	127	21	588.5	588.5	NUM
afs-46512	127	22	1.365	1.365	NUM
afs-46512	127	23	prlr	prlr	NOUN
afs-46512	127	24	73.035	73.035	NUM
afs-46512	127	25	88.176	88.176	NUM
afs-46512	127	26	1.207	1.207	NUM
afs-46512	127	27	ntrk2	ntrk2	NOUN
afs-46512	127	28	2600.062	2600.062	NUM
afs-46512	127	29	1183.672	1183.672	NUM
afs-46512	127	30	0.455	0.455	NUM
afs-46512	127	31	nid1	nid1	ADV
afs-46512	127	32	21228.276	21228.276	NUM
afs-46512	127	33	15125.120	15125.120	NUM
afs-46512	127	34	0.712	0.712	NUM
afs-46512	127	35	foxo1	foxo1	NOUN
afs-46512	128	1	7541.432	7541.432	NUM
afs-46512	128	2	27351.922	27351.922	NUM
afs-46512	128	3	3.627	3.627	NUM
afs-46512	128	4	htra1	htra1	NOUN
afs-46512	129	1	3034.101	3034.101	NUM
afs-46512	129	2	3641.108	3641.108	NUM
afs-46512	129	3	1.200	1.200	NUM
afs-46512	129	4	serpine2	serpine2	NOUN
afs-46512	129	5	26099.740	26099.740	NUM
afs-46512	129	6	169539.172	169539.172	NUM
afs-46512	129	7	6.496	6.496	NUM
afs-46512	129	8	ppap2b	ppap2b	PROPN
afs-46512	129	9	11195.291	11195.291	PROPN
afs-46512	129	10	11909.559	11909.559	NUM
afs-46512	129	11	1.064	1.064	NUM
afs-46512	129	12	agricultural	agricultural	ADJ
afs-46512	129	13	and	and	CCONJ
afs-46512	129	14	food	food	NOUN
afs-46512	129	15	science	science	PROPN
afs-46512	129	16	k.	k.	PROPN
afs-46512	129	17	pokharel	pokharel	PROPN
afs-46512	129	18	et	et	PROPN
afs-46512	129	19	al	al	PROPN
afs-46512	129	20	.	.	PROPN
afs-46512	130	1	(	(	PUNCT
afs-46512	130	2	2015	2015	NUM
afs-46512	130	3	)	)	PUNCT
afs-46512	130	4	24	24	NUM
afs-46512	130	5	:	:	PUNCT
afs-46512	130	6	1–9	1–9	NUM
afs-46512	130	7	7	7	NUM
afs-46512	130	8	and	and	CCONJ
afs-46512	130	9	litter	litter	NOUN
afs-46512	130	10	size	size	NOUN
afs-46512	130	11	(	(	PUNCT
afs-46512	130	12	vinet	vinet	PROPN
afs-46512	130	13	et	et	PROPN
afs-46512	130	14	al	al	PROPN
afs-46512	130	15	.	.	PROPN
afs-46512	130	16	2012	2012	NUM
afs-46512	130	17	,	,	PUNCT
afs-46512	130	18	våge	våge	VERB
afs-46512	130	19	et	et	PROPN
afs-46512	130	20	al	al	PROPN
afs-46512	130	21	.	.	PROPN
afs-46512	130	22	2013	2013	NUM
afs-46512	130	23	)	)	PUNCT
afs-46512	130	24	were	be	AUX
afs-46512	130	25	not	not	PART
afs-46512	130	26	found	find	VERB
afs-46512	130	27	.	.	PUNCT
afs-46512	131	1	this	this	DET
afs-46512	131	2	observation	observation	NOUN
afs-46512	131	3	needs	need	VERB
afs-46512	131	4	to	to	PART
afs-46512	131	5	be	be	AUX
afs-46512	131	6	verified	verify	VERB
afs-46512	131	7	with	with	ADP
afs-46512	131	8	a	a	DET
afs-46512	131	9	larger	large	ADJ
afs-46512	131	10	dataset	dataset	NOUN
afs-46512	131	11	,	,	PUNCT
afs-46512	131	12	but	but	CCONJ
afs-46512	131	13	the	the	DET
afs-46512	131	14	results	result	NOUN
afs-46512	131	15	support	support	VERB
afs-46512	131	16	the	the	DET
afs-46512	131	17	hypothesis	hypothesis	NOUN
afs-46512	131	18	that	that	PRON
afs-46512	131	19	the	the	DET
afs-46512	131	20	mutations	mutation	NOUN
afs-46512	131	21	at	at	ADP
afs-46512	131	22	major	major	ADJ
afs-46512	131	23	genes	gene	NOUN
afs-46512	131	24	may	may	AUX
afs-46512	131	25	not	not	PART
afs-46512	131	26	explain	explain	VERB
afs-46512	131	27	the	the	DET
afs-46512	131	28	exceptional	exceptional	ADJ
afs-46512	131	29	prolificacy	prolificacy	NOUN
afs-46512	131	30	of	of	ADP
afs-46512	131	31	the	the	DET
afs-46512	131	32	finnsheep	finnsheep	NOUN
afs-46512	131	33	.	.	PUNCT
afs-46512	132	1	in	in	ADP
afs-46512	132	2	addition	addition	NOUN
afs-46512	132	3	to	to	ADP
afs-46512	132	4	the	the	DET
afs-46512	132	5	candidate	candidate	NOUN
afs-46512	132	6	genes	gene	NOUN
afs-46512	132	7	,	,	PUNCT
afs-46512	132	8	the	the	DET
afs-46512	132	9	data	datum	NOUN
afs-46512	132	10	provide	provide	VERB
afs-46512	132	11	insights	insight	NOUN
afs-46512	132	12	into	into	ADP
afs-46512	132	13	biological	biological	ADJ
afs-46512	132	14	pathways	pathway	NOUN
afs-46512	132	15	in	in	ADP
afs-46512	132	16	the	the	DET
afs-46512	132	17	sheep	sheep	NOUN
afs-46512	132	18	ovary	ovary	NOUN
afs-46512	132	19	during	during	ADP
afs-46512	132	20	the	the	DET
afs-46512	132	21	out	out	ADJ
afs-46512	132	22	-	-	PUNCT
afs-46512	132	23	of	of	ADP
afs-46512	132	24	-	-	PUNCT
afs-46512	132	25	season	season	NOUN
afs-46512	132	26	breeding	breeding	NOUN
afs-46512	132	27	period	period	NOUN
afs-46512	132	28	.	.	PUNCT
afs-46512	133	1	follicles	follicle	NOUN
afs-46512	133	2	,	,	PUNCT
afs-46512	133	3	the	the	DET
afs-46512	133	4	functional	functional	ADJ
afs-46512	133	5	units	unit	NOUN
afs-46512	133	6	of	of	ADP
afs-46512	133	7	the	the	DET
afs-46512	133	8	ovary	ovary	NOUN
afs-46512	133	9	,	,	PUNCT
afs-46512	133	10	are	be	AUX
afs-46512	133	11	made	make	VERB
afs-46512	133	12	up	up	ADP
afs-46512	133	13	of	of	ADP
afs-46512	133	14	an	an	DET
afs-46512	133	15	oocyte	oocyte	NOUN
afs-46512	133	16	surrounded	surround	VERB
afs-46512	133	17	by	by	ADP
afs-46512	133	18	one	one	NUM
afs-46512	133	19	or	or	CCONJ
afs-46512	133	20	more	more	ADJ
afs-46512	133	21	layers	layer	NOUN
afs-46512	133	22	of	of	ADP
afs-46512	133	23	somatic	somatic	ADJ
afs-46512	133	24	cells	cell	NOUN
afs-46512	133	25	,	,	PUNCT
afs-46512	133	26	namely	namely	ADV
afs-46512	133	27	theca	theca	NOUN
afs-46512	133	28	cells	cell	NOUN
afs-46512	133	29	and	and	CCONJ
afs-46512	133	30	granulosa	granulosa	NOUN
afs-46512	133	31	cells	cell	NOUN
afs-46512	133	32	.	.	PUNCT
afs-46512	134	1	early	early	ADJ
afs-46512	134	2	stage	stage	NOUN
afs-46512	134	3	development	development	NOUN
afs-46512	134	4	of	of	ADP
afs-46512	134	5	follicles	follicle	NOUN
afs-46512	134	6	is	be	AUX
afs-46512	134	7	mediated	mediate	VERB
afs-46512	134	8	by	by	ADP
afs-46512	134	9	two	two	NUM
afs-46512	134	10	members	member	NOUN
afs-46512	134	11	of	of	ADP
afs-46512	134	12	the	the	DET
afs-46512	134	13	transforming	transform	VERB
afs-46512	134	14	growth	growth	NOUN
afs-46512	134	15	factor	factor	NOUN
afs-46512	134	16	β	β	X
afs-46512	134	17	(	(	PUNCT
afs-46512	134	18	tgf	tgf	PROPN
afs-46512	134	19	-	-	PUNCT
afs-46512	134	20	β	β	NOUN
afs-46512	134	21	)	)	PUNCT
afs-46512	134	22	family	family	NOUN
afs-46512	134	23	,	,	PUNCT
afs-46512	134	24	gdf9	gdf9	PROPN
afs-46512	134	25	and	and	CCONJ
afs-46512	134	26	bmp15	bmp15	PROPN
afs-46512	134	27	(	(	PUNCT
afs-46512	134	28	dong	dong	NOUN
afs-46512	134	29	et	et	PROPN
afs-46512	134	30	al	al	PROPN
afs-46512	134	31	.	.	PROPN
afs-46512	134	32	1996	1996	NUM
afs-46512	134	33	,	,	PUNCT
afs-46512	134	34	carabatsos	carabatso	NOUN
afs-46512	134	35	et	et	PROPN
afs-46512	134	36	al	al	PROPN
afs-46512	134	37	.	.	PROPN
afs-46512	134	38	1998	1998	NUM
afs-46512	134	39	,	,	PUNCT
afs-46512	134	40	galloway	galloway	PROPN
afs-46512	134	41	et	et	PROPN
afs-46512	134	42	al	al	PROPN
afs-46512	134	43	.	.	PROPN
afs-46512	134	44	2000	2000	NUM
afs-46512	134	45	)	)	PUNCT
afs-46512	134	46	.	.	PUNCT
afs-46512	135	1	follicle	follicle	PROPN
afs-46512	135	2	development	development	NOUN
afs-46512	135	3	progresses	progress	VERB
afs-46512	135	4	through	through	ADP
afs-46512	135	5	successive	successive	ADJ
afs-46512	135	6	stages	stage	NOUN
afs-46512	135	7	via	via	ADP
afs-46512	135	8	bi	bi	ADJ
afs-46512	135	9	-	-	ADJ
afs-46512	135	10	directional	directional	ADJ
afs-46512	135	11	interaction	interaction	NOUN
afs-46512	135	12	between	between	ADP
afs-46512	135	13	oocyte	oocyte	ADJ
afs-46512	135	14	-	-	PUNCT
afs-46512	135	15	granulosa	granulosa	NOUN
afs-46512	135	16	cells	cell	NOUN
afs-46512	135	17	and	and	CCONJ
afs-46512	135	18	granulosa	granulosa	NOUN
afs-46512	135	19	cells	cell	NOUN
afs-46512	135	20	–	–	PUNCT
afs-46512	135	21	theca	theca	NOUN
afs-46512	135	22	cells	cell	NOUN
afs-46512	135	23	(	(	PUNCT
afs-46512	135	24	eppig	eppig	PROPN
afs-46512	135	25	2001	2001	NUM
afs-46512	135	26	)	)	PUNCT
afs-46512	135	27	,	,	PUNCT
afs-46512	135	28	featuring	feature	VERB
afs-46512	135	29	again	again	ADV
afs-46512	135	30	the	the	DET
afs-46512	135	31	members	member	NOUN
afs-46512	135	32	of	of	ADP
afs-46512	135	33	tgf	tgf	PROPN
afs-46512	135	34	-	-	PUNCT
afs-46512	135	35	β	β	PROPN
afs-46512	135	36	family	family	NOUN
afs-46512	135	37	.	.	PUNCT
afs-46512	136	1	several	several	ADJ
afs-46512	136	2	members	member	NOUN
afs-46512	136	3	of	of	ADP
afs-46512	136	4	the	the	DET
afs-46512	136	5	tgf	tgf	PROPN
afs-46512	136	6	-	-	PUNCT
afs-46512	136	7	β	β	PROPN
afs-46512	136	8	were	be	AUX
afs-46512	136	9	expressed	express	VERB
afs-46512	136	10	in	in	ADP
afs-46512	136	11	the	the	DET
afs-46512	136	12	data	datum	NOUN
afs-46512	136	13	.	.	PUNCT
afs-46512	137	1	these	these	PRON
afs-46512	137	2	include	include	VERB
afs-46512	137	3	the	the	DET
afs-46512	137	4	prototypic	prototypic	PROPN
afs-46512	137	5	tgf	tgf	PROPN
afs-46512	137	6	-	-	PUNCT
afs-46512	137	7	β	β	X
afs-46512	137	8	subfamily	subfamily	ADV
afs-46512	137	9	(	(	PUNCT
afs-46512	137	10	tgf	tgf	NOUN
afs-46512	137	11	-	-	PUNCT
afs-46512	137	12	β3	β3	ADJ
afs-46512	137	13	,	,	PUNCT
afs-46512	137	14	tgf	tgf	PROPN
afs-46512	137	15	-	-	PUNCT
afs-46512	137	16	β1	β1	PROPN
afs-46512	137	17	,	,	PUNCT
afs-46512	137	18	tgf	tgf	PROPN
afs-46512	137	19	-	-	PUNCT
afs-46512	137	20	β1i1	β1i1	PROPN
afs-46512	137	21	,	,	PUNCT
afs-46512	137	22	tgf	tgf	PROPN
afs-46512	137	23	-	-	PUNCT
afs-46512	137	24	β1r1	β1r1	PROPN
afs-46512	137	25	,	,	PUNCT
afs-46512	137	26	tgf	tgf	PROPN
afs-46512	137	27	-	-	PUNCT
afs-46512	137	28	β2	β2	PROPN
afs-46512	137	29	,	,	PUNCT
afs-46512	137	30	tgf	tgf	PROPN
afs-46512	137	31	-	-	PUNCT
afs-46512	137	32	βr2	βr2	PROPN
afs-46512	137	33	,	,	PUNCT
afs-46512	137	34	tgf	tgf	PROPN
afs-46512	137	35	-	-	PUNCT
afs-46512	137	36	βi	βi	PROPN
afs-46512	137	37	,	,	PUNCT
afs-46512	137	38	tgf	tgf	PROPN
afs-46512	137	39	-	-	PUNCT
afs-46512	137	40	βr3	βr3	PROPN
afs-46512	137	41	)	)	PUNCT
afs-46512	137	42	,	,	PUNCT
afs-46512	137	43	an	an	DET
afs-46512	137	44	extensive	extensive	ADJ
afs-46512	137	45	bmp	bmp	NOUN
afs-46512	137	46	subfamily	subfamily	ADV
afs-46512	137	47	(	(	PUNCT
afs-46512	137	48	bmp15	bmp15	PROPN
afs-46512	137	49	,	,	PUNCT
afs-46512	137	50	bmp1	bmp1	NOUN
afs-46512	137	51	,	,	PUNCT
afs-46512	137	52	bmpr1b	bmpr1b	NOUN
afs-46512	137	53	,	,	PUNCT
afs-46512	137	54	bmp6	bmp6	NOUN
afs-46512	137	55	,	,	PUNCT
afs-46512	137	56	bmpr2	bmpr2	NOUN
afs-46512	137	57	,	,	PUNCT
afs-46512	137	58	bmp7	bmp7	NOUN
afs-46512	137	59	,	,	PUNCT
afs-46512	137	60	bmp2	bmp2	PROPN
afs-46512	137	61	,	,	PUNCT
afs-46512	137	62	bmp3	bmp3	PROPN
afs-46512	137	63	,	,	PUNCT
afs-46512	137	64	bmp4	bmp4	NOUN
afs-46512	137	65	)	)	PUNCT
afs-46512	137	66	,	,	PUNCT
afs-46512	137	67	the	the	DET
afs-46512	137	68	gdf	gdf	NOUN
afs-46512	137	69	subfamily	subfamily	ADV
afs-46512	137	70	(	(	PUNCT
afs-46512	137	71	gdf11	gdf11	PROPN
afs-46512	137	72	,	,	PUNCT
afs-46512	137	73	gdf6	gdf6	NOUN
afs-46512	137	74	,	,	PUNCT
afs-46512	137	75	gdf9	gdf9	PROPN
afs-46512	137	76	,	,	PUNCT
afs-46512	137	77	gdf10	gdf10	NOUN
afs-46512	137	78	,	,	PUNCT
afs-46512	137	79	gdf3	gdf3	NOUN
afs-46512	137	80	,	,	PUNCT
afs-46512	137	81	gdf1	gdf1	PROPN
afs-46512	137	82	)	)	PUNCT
afs-46512	137	83	,	,	PUNCT
afs-46512	137	84	the	the	DET
afs-46512	137	85	inhibin	inhibin	ADJ
afs-46512	137	86	subfamily	subfamily	ADV
afs-46512	137	87	(	(	PUNCT
afs-46512	137	88	inha	inha	NOUN
afs-46512	137	89	,	,	PUNCT
afs-46512	137	90	inhba	inhba	PROPN
afs-46512	137	91	)	)	PUNCT
afs-46512	137	92	as	as	ADV
afs-46512	137	93	well	well	ADV
afs-46512	137	94	as	as	ADP
afs-46512	137	95	the	the	DET
afs-46512	137	96	glial	glial	ADJ
afs-46512	137	97	cell	cell	NOUN
afs-46512	137	98	-	-	PUNCT
afs-46512	137	99	derived	derive	VERB
afs-46512	137	100	neurotrophic	neurotrophic	ADJ
afs-46512	137	101	factor	factor	NOUN
afs-46512	137	102	(	(	PUNCT
afs-46512	137	103	gdnf	gdnf	PROPN
afs-46512	137	104	)	)	PUNCT
afs-46512	137	105	and	and	CCONJ
afs-46512	137	106	anti	anti	ADJ
afs-46512	137	107	-	-	ADJ
afs-46512	137	108	mullerian	mullerian	ADJ
afs-46512	137	109	hormone	hormone	NOUN
afs-46512	137	110	(	(	PUNCT
afs-46512	137	111	amh	amh	PROPN
afs-46512	137	112	)	)	PUNCT
afs-46512	137	113	.	.	PUNCT
afs-46512	138	1	in	in	ADP
afs-46512	138	2	the	the	DET
afs-46512	138	3	data	datum	NOUN
afs-46512	138	4	,	,	PUNCT
afs-46512	138	5	5606	5606	NUM
afs-46512	138	6	unknown	unknown	ADJ
afs-46512	138	7	transcripts	transcript	NOUN
afs-46512	138	8	were	be	AUX
afs-46512	138	9	also	also	ADV
afs-46512	138	10	expressed	express	VERB
afs-46512	138	11	(	(	PUNCT
afs-46512	138	12	fig	fig	NOUN
afs-46512	138	13	.	.	PUNCT
afs-46512	139	1	2	2	NUM
afs-46512	139	2	)	)	PUNCT
afs-46512	139	3	.	.	PUNCT
afs-46512	140	1	these	these	PRON
afs-46512	140	2	matched	match	VERB
afs-46512	140	3	to	to	PART
afs-46512	140	4	genomic	genomic	ADJ
afs-46512	140	5	sequences	sequence	NOUN
afs-46512	140	6	of	of	ADP
afs-46512	140	7	related	relate	VERB
afs-46512	140	8	ruminant	ruminant	NOUN
afs-46512	140	9	species	specie	NOUN
afs-46512	140	10	(	(	PUNCT
afs-46512	140	11	taurine	taurine	ADJ
afs-46512	140	12	cattle	cattle	NOUN
afs-46512	140	13	,	,	PUNCT
afs-46512	140	14	yak	yak	NOUN
afs-46512	140	15	and	and	CCONJ
afs-46512	140	16	goat	goat	PROPN
afs-46512	140	17	)	)	PUNCT
afs-46512	140	18	,	,	PUNCT
afs-46512	140	19	but	but	CCONJ
afs-46512	140	20	also	also	ADV
afs-46512	140	21	to	to	ADP
afs-46512	140	22	domestic	domestic	ADJ
afs-46512	140	23	pig	pig	NOUN
afs-46512	140	24	and	and	CCONJ
afs-46512	140	25	orfv	orfv	PROPN
afs-46512	140	26	.	.	PUNCT
afs-46512	141	1	orfv	orfv	PROPN
afs-46512	141	2	is	be	AUX
afs-46512	141	3	one	one	NUM
afs-46512	141	4	of	of	ADP
afs-46512	141	5	the	the	DET
afs-46512	141	6	four	four	NUM
afs-46512	141	7	viruses	virus	NOUN
afs-46512	141	8	in	in	ADP
afs-46512	141	9	the	the	DET
afs-46512	141	10	genus	genus	ADJ
afs-46512	141	11	parapoxvirus	parapoxvirus	NOUN
afs-46512	141	12	(	(	PUNCT
afs-46512	141	13	ppv	ppv	NOUN
afs-46512	141	14	)	)	PUNCT
afs-46512	141	15	of	of	ADP
afs-46512	141	16	poxviridae	poxviridae	PROPN
afs-46512	141	17	family	family	NOUN
afs-46512	141	18	,	,	PUNCT
afs-46512	141	19	causing	cause	VERB
afs-46512	141	20	contagious	contagious	ADJ
afs-46512	141	21	ecthyma	ecthyma	NOUN
afs-46512	141	22	(	(	PUNCT
afs-46512	141	23	orf	orf	PROPN
afs-46512	141	24	)	)	PUNCT
afs-46512	141	25	,	,	PUNCT
afs-46512	141	26	primarily	primarily	ADV
afs-46512	141	27	in	in	ADP
afs-46512	141	28	sheep	sheep	NOUN
afs-46512	141	29	and	and	CCONJ
afs-46512	141	30	goat	goat	PROPN
afs-46512	141	31	(	(	PUNCT
afs-46512	141	32	crumbie	crumbie	PROPN
afs-46512	141	33	1998	1998	NUM
afs-46512	141	34	)	)	PUNCT
afs-46512	141	35	.	.	PUNCT
afs-46512	142	1	recent	recent	ADJ
afs-46512	142	2	studies	study	NOUN
afs-46512	142	3	have	have	AUX
afs-46512	142	4	shown	show	VERB
afs-46512	142	5	the	the	DET
afs-46512	142	6	importance	importance	NOUN
afs-46512	142	7	of	of	ADP
afs-46512	142	8	retrovirus	retrovirus	NOUN
afs-46512	142	9	in	in	ADP
afs-46512	142	10	sheep	sheep	NOUN
afs-46512	142	11	reproduction	reproduction	NOUN
afs-46512	142	12	and	and	CCONJ
afs-46512	142	13	development	development	NOUN
afs-46512	142	14	(	(	PUNCT
afs-46512	142	15	dunlap	dunlap	PROPN
afs-46512	142	16	et	et	PROPN
afs-46512	142	17	al	al	PROPN
afs-46512	142	18	.	.	PROPN
afs-46512	142	19	2006	2006	NUM
afs-46512	142	20	)	)	PUNCT
afs-46512	142	21	.	.	PUNCT
afs-46512	143	1	in	in	ADP
afs-46512	143	2	addition	addition	NOUN
afs-46512	143	3	,	,	PUNCT
afs-46512	143	4	endogenous	endogenous	ADJ
afs-46512	143	5	retroviruses	retrovirus	NOUN
afs-46512	143	6	have	have	AUX
afs-46512	143	7	been	be	AUX
afs-46512	143	8	used	use	VERB
afs-46512	143	9	as	as	ADP
afs-46512	143	10	genetic	genetic	ADJ
afs-46512	143	11	markers	marker	NOUN
afs-46512	143	12	to	to	PART
afs-46512	143	13	explore	explore	VERB
afs-46512	143	14	sheep	sheep	NOUN
afs-46512	143	15	domestication	domestication	NOUN
afs-46512	143	16	history	history	NOUN
afs-46512	143	17	(	(	PUNCT
afs-46512	143	18	chessa	chessa	NOUN
afs-46512	143	19	et	et	PROPN
afs-46512	143	20	al	al	PROPN
afs-46512	143	21	.	.	PROPN
afs-46512	143	22	2009	2009	NUM
afs-46512	143	23	)	)	PUNCT
afs-46512	143	24	.	.	PUNCT
afs-46512	144	1	thus	thus	ADV
afs-46512	144	2	,	,	PUNCT
afs-46512	144	3	further	further	ADJ
afs-46512	144	4	characterization	characterization	NOUN
afs-46512	144	5	of	of	ADP
afs-46512	144	6	those	those	DET
afs-46512	144	7	transcripts	transcript	NOUN
afs-46512	144	8	might	might	AUX
afs-46512	144	9	provide	provide	VERB
afs-46512	144	10	valuable	valuable	ADJ
afs-46512	144	11	insights	insight	NOUN
afs-46512	144	12	on	on	ADP
afs-46512	144	13	adaptation	adaptation	NOUN
afs-46512	144	14	of	of	ADP
afs-46512	144	15	finnsheep	finnsheep	NOUN
afs-46512	144	16	in	in	ADP
afs-46512	144	17	extreme	extreme	ADJ
afs-46512	144	18	climate	climate	NOUN
afs-46512	144	19	or	or	CCONJ
afs-46512	144	20	its	its	PRON
afs-46512	144	21	exceptional	exceptional	ADJ
afs-46512	144	22	reproductive	reproductive	ADJ
afs-46512	144	23	performance	performance	NOUN
afs-46512	144	24	compared	compare	VERB
afs-46512	144	25	to	to	ADP
afs-46512	144	26	other	other	ADJ
afs-46512	144	27	breeds	breed	NOUN
afs-46512	144	28	.	.	PUNCT
afs-46512	145	1	conclusions	conclusion	NOUN
afs-46512	145	2	here	here	ADV
afs-46512	145	3	we	we	PRON
afs-46512	145	4	present	present	VERB
afs-46512	145	5	the	the	DET
afs-46512	145	6	first	first	ADJ
afs-46512	145	7	transcriptome	transcriptome	ADJ
afs-46512	145	8	profiling	profiling	NOUN
afs-46512	145	9	of	of	ADP
afs-46512	145	10	the	the	DET
afs-46512	145	11	finnsheep	finnsheep	NOUN
afs-46512	145	12	,	,	PUNCT
afs-46512	145	13	which	which	PRON
afs-46512	145	14	is	be	AUX
afs-46512	145	15	a	a	DET
afs-46512	145	16	valuable	valuable	ADJ
afs-46512	145	17	sheep	sheep	NOUN
afs-46512	145	18	breed	breed	VERB
afs-46512	145	19	for	for	ADP
afs-46512	145	20	global	global	ADJ
afs-46512	145	21	sheep	sheep	NOUN
afs-46512	145	22	farming	farm	VERB
afs-46512	145	23	.	.	PUNCT
afs-46512	146	1	in	in	ADP
afs-46512	146	2	the	the	DET
afs-46512	146	3	two	two	NUM
afs-46512	146	4	studied	study	VERB
afs-46512	146	5	ovaries	ovary	NOUN
afs-46512	146	6	from	from	ADP
afs-46512	146	7	finnsheep	finnsheep	ADJ
afs-46512	146	8	ewes	ewe	NOUN
afs-46512	146	9	we	we	PRON
afs-46512	146	10	identified	identify	VERB
afs-46512	146	11	transcripts	transcript	NOUN
afs-46512	146	12	of	of	ADP
afs-46512	146	13	14875	14875	NUM
afs-46512	146	14	genes	gene	NOUN
afs-46512	146	15	.	.	PUNCT
afs-46512	147	1	also	also	ADV
afs-46512	147	2	,	,	PUNCT
afs-46512	147	3	majority	majority	NOUN
afs-46512	147	4	of	of	ADP
afs-46512	147	5	the	the	DET
afs-46512	147	6	putative	putative	ADJ
afs-46512	147	7	candidate	candidate	NOUN
afs-46512	147	8	genes	gene	NOUN
afs-46512	147	9	related	relate	VERB
afs-46512	147	10	to	to	ADP
afs-46512	147	11	fertility	fertility	NOUN
afs-46512	147	12	and	and	CCONJ
afs-46512	147	13	out	out	ADP
afs-46512	147	14	-	-	PUNCT
afs-46512	147	15	of	of	ADP
afs-46512	147	16	-	-	PUNCT
afs-46512	147	17	season	season	NOUN
afs-46512	147	18	reproduction	reproduction	NOUN
afs-46512	147	19	were	be	AUX
afs-46512	147	20	present	present	ADJ
afs-46512	147	21	in	in	ADP
afs-46512	147	22	both	both	DET
afs-46512	147	23	samples	sample	NOUN
afs-46512	147	24	.	.	PUNCT
afs-46512	148	1	presence	presence	NOUN
afs-46512	148	2	of	of	ADP
afs-46512	148	3	the	the	DET
afs-46512	148	4	majority	majority	NOUN
afs-46512	148	5	of	of	ADP
afs-46512	148	6	putative	putative	ADJ
afs-46512	148	7	candidate	candidate	NOUN
afs-46512	148	8	genes	gene	NOUN
afs-46512	148	9	associated	associate	VERB
afs-46512	148	10	with	with	ADP
afs-46512	148	11	out	out	ADV
afs-46512	148	12	-	-	PUNCT
afs-46512	148	13	of	of	ADP
afs-46512	148	14	-	-	PUNCT
afs-46512	148	15	season	season	NOUN
afs-46512	148	16	breeding	breeding	NOUN
afs-46512	148	17	in	in	ADP
afs-46512	148	18	our	our	PRON
afs-46512	148	19	data	datum	NOUN
afs-46512	148	20	not	not	PART
afs-46512	148	21	only	only	ADV
afs-46512	148	22	strengthens	strengthen	VERB
afs-46512	148	23	previous	previous	ADJ
afs-46512	148	24	findings	finding	NOUN
afs-46512	148	25	,	,	PUNCT
afs-46512	148	26	but	but	CCONJ
afs-46512	148	27	also	also	ADV
afs-46512	148	28	enables	enable	VERB
afs-46512	148	29	further	further	ADJ
afs-46512	148	30	research	research	NOUN
afs-46512	148	31	in	in	ADP
afs-46512	148	32	this	this	DET
afs-46512	148	33	area	area	NOUN
afs-46512	148	34	.	.	PUNCT
afs-46512	149	1	presence	presence	NOUN
afs-46512	149	2	of	of	ADP
afs-46512	149	3	orfv	orfv	ADJ
afs-46512	149	4	genes	gene	NOUN
afs-46512	149	5	in	in	ADP
afs-46512	149	6	the	the	DET
afs-46512	149	7	data	data	NOUN
afs-46512	149	8	suggests	suggest	VERB
afs-46512	149	9	its	its	PRON
afs-46512	149	10	retro	retro	VERB
afs-46512	149	11	-	-	PUNCT
afs-46512	149	12	viral	viral	ADJ
afs-46512	149	13	existence	existence	NOUN
afs-46512	149	14	in	in	ADP
afs-46512	149	15	the	the	DET
afs-46512	149	16	genome	genome	NOUN
afs-46512	149	17	of	of	ADP
afs-46512	149	18	sheep	sheep	NOUN
afs-46512	149	19	.	.	PUNCT
afs-46512	150	1	our	our	PRON
afs-46512	150	2	results	result	NOUN
afs-46512	150	3	showed	show	VERB
afs-46512	150	4	that	that	SCONJ
afs-46512	150	5	ovaries	ovary	NOUN
afs-46512	150	6	can	can	AUX
afs-46512	150	7	be	be	AUX
afs-46512	150	8	a	a	DET
afs-46512	150	9	very	very	ADV
afs-46512	150	10	good	good	ADJ
afs-46512	150	11	candidate	candidate	NOUN
afs-46512	150	12	tissue	tissue	NOUN
afs-46512	150	13	for	for	ADP
afs-46512	150	14	reproductive	reproductive	ADJ
afs-46512	150	15	genomics	genomic	NOUN
afs-46512	150	16	studies	study	NOUN
afs-46512	150	17	utilizing	utilize	VERB
afs-46512	150	18	high	high	ADJ
afs-46512	150	19	throughput	throughput	NOUN
afs-46512	150	20	sequencing	sequence	VERB
afs-46512	150	21	techniques	technique	NOUN
afs-46512	150	22	and	and	CCONJ
afs-46512	150	23	bioinformatics	bioinformatics	NOUN
afs-46512	150	24	methods	method	NOUN
afs-46512	150	25	.	.	PUNCT
afs-46512	151	1	authors	author	NOUN
afs-46512	151	2	’	’	PART
afs-46512	151	3	contributions	contribution	NOUN
afs-46512	151	4	jk	jk	PROPN
afs-46512	151	5	,	,	PUNCT
afs-46512	151	6	m	m	PROPN
afs-46512	151	7	-	-	PUNCT
afs-46512	151	8	hl	hl	NOUN
afs-46512	151	9	and	and	CCONJ
afs-46512	151	10	jp	jp	NOUN
afs-46512	151	11	collected	collect	VERB
afs-46512	151	12	the	the	DET
afs-46512	151	13	samples	sample	NOUN
afs-46512	151	14	and	and	CCONJ
afs-46512	151	15	designed	design	VERB
afs-46512	151	16	the	the	DET
afs-46512	151	17	experiment	experiment	NOUN
afs-46512	151	18	.	.	PUNCT
afs-46512	152	1	kp	kp	PROPN
afs-46512	152	2	analyzed	analyze	VERB
afs-46512	152	3	the	the	DET
afs-46512	152	4	data	datum	NOUN
afs-46512	152	5	and	and	CCONJ
afs-46512	152	6	wrote	write	VERB
afs-46512	152	7	the	the	DET
afs-46512	152	8	manuscript	manuscript	NOUN
afs-46512	152	9	.	.	PUNCT
afs-46512	153	1	jk	jk	PROPN
afs-46512	153	2	,	,	PUNCT
afs-46512	153	3	m	m	PROPN
afs-46512	153	4	-	-	PUNCT
afs-46512	153	5	hl	hl	NOUN
afs-46512	153	6	and	and	CCONJ
afs-46512	153	7	jp	jp	NOUN
afs-46512	153	8	participated	participate	VERB
afs-46512	153	9	in	in	ADP
afs-46512	153	10	the	the	DET
afs-46512	153	11	manuscript	manuscript	NOUN
afs-46512	153	12	writing	write	VERB
afs-46512	153	13	.	.	PUNCT
afs-46512	154	1	all	all	DET
afs-46512	154	2	the	the	DET
afs-46512	154	3	authors	author	NOUN
afs-46512	154	4	read	read	VERB
afs-46512	154	5	and	and	CCONJ
afs-46512	154	6	approved	approve	VERB
afs-46512	154	7	the	the	DET
afs-46512	154	8	final	final	ADJ
afs-46512	154	9	manuscript	manuscript	NOUN
afs-46512	154	10	.	.	PUNCT
afs-46512	155	1	acknowledgements	acknowledgement	NOUN
afs-46512	155	2	the	the	DET
afs-46512	155	3	study	study	NOUN
afs-46512	155	4	was	be	AUX
afs-46512	155	5	financed	finance	VERB
afs-46512	155	6	by	by	ADP
afs-46512	155	7	the	the	DET
afs-46512	155	8	grants	grant	NOUN
afs-46512	155	9	(	(	PUNCT
afs-46512	155	10	no	no	INTJ
afs-46512	155	11	.	.	NOUN
afs-46512	155	12	250633	250633	NUM
afs-46512	155	13	and	and	CCONJ
afs-46512	155	14	256077	256077	NUM
afs-46512	155	15	;	;	PUNCT
afs-46512	155	16	m	m	PROPN
afs-46512	155	17	-	-	PUNCT
afs-46512	155	18	hl	hl	NOUN
afs-46512	155	19	)	)	PUNCT
afs-46512	155	20	from	from	ADP
afs-46512	155	21	the	the	DET
afs-46512	155	22	academy	academy	PROPN
afs-46512	155	23	of	of	ADP
afs-46512	155	24	finland	finland	PROPN
afs-46512	155	25	and	and	CCONJ
afs-46512	155	26	the	the	DET
afs-46512	155	27	national	national	ADJ
afs-46512	155	28	natural	natural	PROPN
afs-46512	155	29	science	science	PROPN
afs-46512	155	30	foundation	foundation	PROPN
afs-46512	155	31	of	of	ADP
afs-46512	155	32	china	china	PROPN
afs-46512	155	33	(	(	PUNCT
afs-46512	155	34	no	no	INTJ
afs-46512	155	35	.	.	NOUN
afs-46512	155	36	31272413	31272413	NUM
afs-46512	155	37	;	;	PUNCT
afs-46512	155	38	m	m	PROPN
afs-46512	155	39	-	-	NOUN
afs-46512	155	40	hl	hl	NOUN
afs-46512	155	41	)	)	PUNCT
afs-46512	155	42	.	.	PUNCT
afs-46512	156	1	kp	kp	PROPN
afs-46512	156	2	’s	’s	PART
afs-46512	156	3	exchange	exchange	NOUN
afs-46512	156	4	visit	visit	NOUN
afs-46512	156	5	to	to	ADP
afs-46512	156	6	prof	prof	PROPN
afs-46512	156	7	.	.	PUNCT
afs-46512	157	1	göran	göran	PROPN
afs-46512	157	2	andersson	andersson	PROPN
afs-46512	157	3	’s	’s	PART
afs-46512	157	4	lab	lab	NOUN
afs-46512	157	5	at	at	ADP
afs-46512	157	6	slu	slu	NOUN
afs-46512	157	7	,	,	PUNCT
afs-46512	157	8	sweden	sweden	PROPN
afs-46512	157	9	was	be	AUX
afs-46512	157	10	supported	support	VERB
afs-46512	157	11	by	by	ADP
afs-46512	157	12	the	the	DET
afs-46512	157	13	genomic	genomic	ADJ
afs-46512	157	14	resources	resource	NOUN
afs-46512	157	15	research	research	NOUN
afs-46512	157	16	networking	network	VERB
afs-46512	157	17	programme	programme	NOUN
afs-46512	157	18	of	of	ADP
afs-46512	157	19	the	the	DET
afs-46512	157	20	european	european	PROPN
afs-46512	157	21	science	science	PROPN
afs-46512	157	22	foundation	foundation	PROPN
afs-46512	157	23	.	.	PUNCT
afs-46512	158	1	eija	eija	PROPN
afs-46512	158	2	korpelainen	korpelainen	PROPN
afs-46512	158	3	and	and	CCONJ
afs-46512	158	4	matti	matti	PROPN
afs-46512	158	5	kankainen	kankainen	PROPN
afs-46512	158	6	are	be	AUX
afs-46512	158	7	acknowledged	acknowledge	VERB
afs-46512	158	8	for	for	ADP
afs-46512	158	9	their	their	PRON
afs-46512	158	10	helpful	helpful	ADJ
afs-46512	158	11	discussions	discussion	NOUN
afs-46512	158	12	.	.	PUNCT
afs-46512	159	1	computational	computational	ADJ
afs-46512	159	2	resources	resource	NOUN
afs-46512	159	3	were	be	AUX
afs-46512	159	4	provided	provide	VERB
afs-46512	159	5	by	by	ADP
afs-46512	159	6	csc	csc	PROPN
afs-46512	159	7	-	-	PUNCT
afs-46512	159	8	it	it	PRON
afs-46512	159	9	center	center	NOUN
afs-46512	159	10	for	for	ADP
afs-46512	159	11	science	science	PROPN
afs-46512	159	12	ltd	ltd	PROPN
afs-46512	159	13	.	.	PROPN
afs-46512	159	14	references	reference	NOUN
afs-46512	159	15	anders	anders	PROPN
afs-46512	159	16	,	,	PUNCT
afs-46512	159	17	s.	s.	PROPN
afs-46512	159	18	&	&	CCONJ
afs-46512	159	19	huber	huber	PROPN
afs-46512	159	20	,	,	PUNCT
afs-46512	159	21	w.	w.	PROPN
afs-46512	159	22	2010	2010	NUM
afs-46512	159	23	.	.	PUNCT
afs-46512	160	1	differential	differential	ADJ
afs-46512	160	2	expression	expression	NOUN
afs-46512	160	3	analysis	analysis	NOUN
afs-46512	160	4	for	for	ADP
afs-46512	160	5	sequence	sequence	NOUN
afs-46512	160	6	count	count	NOUN
afs-46512	160	7	data	datum	NOUN
afs-46512	160	8	.	.	PUNCT
afs-46512	161	1	genome	genome	NOUN
afs-46512	161	2	biology	biology	NOUN
afs-46512	161	3	11	11	NUM
afs-46512	161	4	:	:	PUNCT
afs-46512	161	5	r106	r106	NUM
afs-46512	161	6	.	.	PUNCT
afs-46512	162	1	doi:10.1186/	doi:10.1186/	VERB
afs-46512	162	2	gb-2010	gb-2010	NOUN
afs-46512	162	3	-	-	PUNCT
afs-46512	162	4	11	11	NUM
afs-46512	162	5	-	-	PUNCT
afs-46512	162	6	10	10	NUM
afs-46512	162	7	-	-	PUNCT
afs-46512	162	8	r106	r106	PROPN
afs-46512	162	9	anders	ander	NOUN
afs-46512	162	10	,	,	PUNCT
afs-46512	162	11	s.	s.	PROPN
afs-46512	162	12	,	,	PUNCT
afs-46512	162	13	pyl	pyl	PROPN
afs-46512	162	14	,	,	PUNCT
afs-46512	162	15	p.t	p.t	PROPN
afs-46512	162	16	.	.	PROPN
afs-46512	162	17	&	&	CCONJ
afs-46512	162	18	huber	huber	PROPN
afs-46512	162	19	,	,	PUNCT
afs-46512	162	20	w.	w.	PROPN
afs-46512	162	21	2015	2015	NUM
afs-46512	162	22	.	.	PUNCT
afs-46512	163	1	htseq	htseq	PROPN
afs-46512	163	2	a	a	DET
afs-46512	163	3	python	python	NOUN
afs-46512	163	4	framework	framework	NOUN
afs-46512	163	5	to	to	PART
afs-46512	163	6	work	work	VERB
afs-46512	163	7	with	with	ADP
afs-46512	163	8	high	high	ADJ
afs-46512	163	9	-	-	PUNCT
afs-46512	163	10	throughput	throughput	NOUN
afs-46512	163	11	sequencing	sequence	VERB
afs-46512	163	12	data	datum	NOUN
afs-46512	163	13	.	.	PUNCT
afs-46512	164	1	bioinformatics	bioinformatic	NOUN
afs-46512	164	2	31	31	NUM
afs-46512	164	3	:	:	PUNCT
afs-46512	164	4	166–169	166–169	NUM
afs-46512	164	5	.	.	PUNCT
afs-46512	164	6	doi:10.1093	doi:10.1093	NOUN
afs-46512	164	7	/	/	SYM
afs-46512	164	8	bioinformatics	bioinformatics	NOUN
afs-46512	164	9	/	/	SYM
afs-46512	164	10	btu638	btu638	NOUN
afs-46512	164	11	agricultural	agricultural	ADJ
afs-46512	164	12	and	and	CCONJ
afs-46512	164	13	food	food	NOUN
afs-46512	164	14	science	science	PROPN
afs-46512	164	15	k.	k.	PROPN
afs-46512	164	16	pokharel	pokharel	PROPN
afs-46512	164	17	et	et	PROPN
afs-46512	164	18	al	al	PROPN
afs-46512	164	19	.	.	PROPN
afs-46512	165	1	(	(	PUNCT
afs-46512	165	2	2015	2015	NUM
afs-46512	165	3	)	)	PUNCT
afs-46512	165	4	24	24	NUM
afs-46512	165	5	:	:	PUNCT
afs-46512	165	6	1–9	1–9	NUM
afs-46512	165	7	8	8	NUM
afs-46512	165	8	andrews	andrews	PROPN
afs-46512	165	9	,	,	PUNCT
afs-46512	165	10	s.	s.	PROPN
afs-46512	165	11	fastqc	fastqc	VERB
afs-46512	165	12	a	a	DET
afs-46512	165	13	quality	quality	NOUN
afs-46512	165	14	control	control	NOUN
afs-46512	165	15	tool	tool	NOUN
afs-46512	165	16	for	for	ADP
afs-46512	165	17	high	high	ADJ
afs-46512	165	18	throughput	throughput	NOUN
afs-46512	165	19	sequence	sequence	NOUN
afs-46512	165	20	data	datum	NOUN
afs-46512	165	21	.	.	PUNCT
afs-46512	166	1	retrieved	retrieve	VERB
afs-46512	166	2	january	january	PROPN
afs-46512	166	3	18	18	NUM
afs-46512	166	4	,	,	PUNCT
afs-46512	166	5	2013	2013	NUM
afs-46512	166	6	,	,	PUNCT
afs-46512	166	7	from	from	ADP
afs-46512	166	8	http://www	http://www	PROPN
afs-46512	166	9	.	.	PUNCT
afs-46512	167	1	bioinformatics.babraham.ac.uk/projects/fastqc/	bioinformatics.babraham.ac.uk/projects/fastqc/	PROPN
afs-46512	167	2	bonnet	bonnet	PROPN
afs-46512	167	3	,	,	PUNCT
afs-46512	167	4	a.	a.	NOUN
afs-46512	167	5	,	,	PUNCT
afs-46512	167	6	cabau	cabau	PROPN
afs-46512	167	7	,	,	PUNCT
afs-46512	167	8	c.	c.	PROPN
afs-46512	167	9	,	,	PUNCT
afs-46512	167	10	bouchez	bouchez	NOUN
afs-46512	167	11	,	,	PUNCT
afs-46512	167	12	o.	o.	PROPN
afs-46512	167	13	,	,	PUNCT
afs-46512	167	14	sarry	sarry	PROPN
afs-46512	167	15	,	,	PUNCT
afs-46512	167	16	j.	j.	PROPN
afs-46512	167	17	,	,	PUNCT
afs-46512	167	18	marsaud	marsaud	PROPN
afs-46512	167	19	,	,	PUNCT
afs-46512	167	20	n.	n.	NOUN
afs-46512	167	21	,	,	PUNCT
afs-46512	167	22	foissac	foissac	NOUN
afs-46512	167	23	,	,	PUNCT
afs-46512	167	24	s.	s.	PROPN
afs-46512	167	25	,	,	PUNCT
afs-46512	167	26	woloszyn	woloszyn	NOUN
afs-46512	167	27	,	,	PUNCT
afs-46512	167	28	f.	f.	PROPN
afs-46512	167	29	,	,	PUNCT
afs-46512	167	30	mulsant	mulsant	PROPN
afs-46512	167	31	,	,	PUNCT
afs-46512	167	32	p.	p.	PROPN
afs-46512	167	33	&	&	CCONJ
afs-46512	167	34	mandon	mandon	PROPN
afs-46512	167	35	-	-	PUNCT
afs-46512	167	36	pepin	pepin	PROPN
afs-46512	167	37	,	,	PUNCT
afs-46512	167	38	b.	b.	PROPN
afs-46512	167	39	2013	2013	NUM
afs-46512	167	40	.	.	PUNCT
afs-46512	168	1	an	an	DET
afs-46512	168	2	overview	overview	NOUN
afs-46512	168	3	of	of	ADP
afs-46512	168	4	gene	gene	NOUN
afs-46512	168	5	expression	expression	NOUN
afs-46512	168	6	dynamics	dynamic	NOUN
afs-46512	168	7	during	during	ADP
afs-46512	168	8	early	early	ADJ
afs-46512	168	9	ovarian	ovarian	ADJ
afs-46512	168	10	folliculogenesis	folliculogenesis	NOUN
afs-46512	168	11	:	:	PUNCT
afs-46512	168	12	specificity	specificity	NOUN
afs-46512	168	13	of	of	ADP
afs-46512	168	14	follicular	follicular	ADJ
afs-46512	168	15	compartments	compartment	NOUN
afs-46512	168	16	and	and	CCONJ
afs-46512	168	17	bi	bi	ADJ
afs-46512	168	18	-	-	ADJ
afs-46512	168	19	directional	directional	ADJ
afs-46512	168	20	dialog	dialog	NOUN
afs-46512	168	21	.	.	PUNCT
afs-46512	169	1	bmc	bmc	ADJ
afs-46512	169	2	genomics	genomic	NOUN
afs-46512	169	3	14	14	NUM
afs-46512	169	4	:	:	SYM
afs-46512	169	5	904	904	NUM
afs-46512	169	6	.	.	PUNCT
afs-46512	170	1	doi:10.1186/1471	doi:10.1186/1471	NOUN
afs-46512	170	2	-	-	PUNCT
afs-46512	170	3	2164	2164	NUM
afs-46512	170	4	-	-	SYM
afs-46512	170	5	14	14	NUM
afs-46512	170	6	-	-	PUNCT
afs-46512	170	7	904	904	NUM
afs-46512	170	8	chen	chen	PROPN
afs-46512	170	9	,	,	PUNCT
afs-46512	170	10	l.	l.	PROPN
afs-46512	170	11	,	,	PUNCT
afs-46512	170	12	liu	liu	PROPN
afs-46512	170	13	,	,	PUNCT
afs-46512	170	14	k.	k.	PROPN
afs-46512	170	15	,	,	PUNCT
afs-46512	170	16	zhao	zhao	PROPN
afs-46512	170	17	,	,	PUNCT
afs-46512	170	18	z.	z.	PROPN
afs-46512	170	19	,	,	PUNCT
afs-46512	170	20	blair	blair	PROPN
afs-46512	170	21	,	,	PUNCT
afs-46512	170	22	h.t	h.t	PROPN
afs-46512	170	23	.	.	PROPN
afs-46512	170	24	,	,	PUNCT
afs-46512	170	25	zhang	zhang	PROPN
afs-46512	170	26	,	,	PUNCT
afs-46512	170	27	p.	p.	PROPN
afs-46512	170	28	,	,	PUNCT
afs-46512	170	29	li	li	PROPN
afs-46512	170	30	,	,	PUNCT
afs-46512	170	31	d.	d.	PROPN
afs-46512	170	32	&	&	CCONJ
afs-46512	170	33	ma	ma	PROPN
afs-46512	170	34	,	,	PUNCT
afs-46512	170	35	r.z	r.z	PROPN
afs-46512	170	36	.	.	PROPN
afs-46512	170	37	2012	2012	NUM
afs-46512	170	38	.	.	PUNCT
afs-46512	171	1	identification	identification	NOUN
afs-46512	171	2	of	of	ADP
afs-46512	171	3	sheep	sheep	NOUN
afs-46512	171	4	ovary	ovary	ADJ
afs-46512	171	5	genes	gene	NOUN
afs-46512	171	6	potentially	potentially	ADV
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afs-46512	171	8	with	with	ADP
afs-46512	171	9	off	off	ADP
afs-46512	171	10	-	-	PUNCT
afs-46512	171	11	season	season	NOUN
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afs-46512	171	13	.	.	PUNCT
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afs-46512	172	2	of	of	ADP
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afs-46512	172	4	and	and	CCONJ
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afs-46512	172	6	39	39	NUM
afs-46512	172	7	:	:	PUNCT
afs-46512	172	8	181–90	181–90	NUM
afs-46512	172	9	.	.	PUNCT
afs-46512	173	1	doi:10.1016	doi:10.1016	PROPN
afs-46512	173	2	/	/	SYM
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afs-46512	173	5	,	,	PUNCT
afs-46512	173	6	b.	b.	PROPN
afs-46512	173	7	,	,	PUNCT
afs-46512	173	8	pereira	pereira	PROPN
afs-46512	173	9	,	,	PUNCT
afs-46512	173	10	f.	f.	PROPN
afs-46512	173	11	,	,	PUNCT
afs-46512	173	12	arnaud	arnaud	PROPN
afs-46512	173	13	,	,	PUNCT
afs-46512	173	14	f.	f.	PROPN
afs-46512	173	15	,	,	PUNCT
afs-46512	173	16	amorim	amorim	PROPN
afs-46512	173	17	,	,	PUNCT
afs-46512	173	18	a.	a.	PROPN
afs-46512	173	19	,	,	PUNCT
afs-46512	173	20	goyache	goyache	PROPN
afs-46512	173	21	,	,	PUNCT
afs-46512	173	22	f.	f.	PROPN
afs-46512	173	23	,	,	PUNCT
afs-46512	173	24	mainland	mainland	PROPN
afs-46512	173	25	,	,	PUNCT
afs-46512	173	26	i.	i.	PROPN
afs-46512	173	27	,	,	PUNCT
afs-46512	173	28	kao	kao	PROPN
afs-46512	173	29	,	,	PUNCT
afs-46512	173	30	rowland	rowland	PROPN
afs-46512	173	31	r.	r.	PROPN
afs-46512	173	32	,	,	PUNCT
afs-46512	173	33	pemberton	pemberton	PROPN
afs-46512	173	34	,	,	PUNCT
afs-46512	173	35	j.m	j.m	PROPN
afs-46512	173	36	.	.	PROPN
afs-46512	173	37	,	,	PUNCT
afs-46512	173	38	beraldi	beraldi	PROPN
afs-46512	173	39	,	,	PUNCT
afs-46512	173	40	d.	d.	PROPN
afs-46512	173	41	,stear	,stear	PROPN
afs-46512	173	42	,	,	PUNCT
afs-46512	173	43	m.j	m.j	PROPN
afs-46512	173	44	.	.	PROPN
afs-46512	173	45	,	,	PUNCT
afs-46512	173	46	alberti	alberti	PROPN
afs-46512	173	47	,	,	PUNCT
afs-46512	173	48	a.	a.	NOUN
afs-46512	173	49	,pittau	,pittau	PROPN
afs-46512	173	50	,	,	PUNCT
afs-46512	173	51	m.	m.	NOUN
afs-46512	173	52	,	,	PUNCT
afs-46512	173	53	iannuzzi	iannuzzi	NOUN
afs-46512	173	54	,	,	PUNCT
afs-46512	173	55	l.	l.	PROPN
afs-46512	173	56	,	,	PUNCT
afs-46512	173	57	banabazi	banabazi	PROPN
afs-46512	173	58	,	,	PUNCT
afs-46512	173	59	m.h	m.h	PROPN
afs-46512	173	60	.	.	PROPN
afs-46512	173	61	,	,	PUNCT
afs-46512	173	62	kazwala	kazwala	PROPN
afs-46512	173	63	,	,	PUNCT
afs-46512	173	64	r.r	r.r	PROPN
afs-46512	173	65	.	.	PROPN
afs-46512	173	66	,	,	PUNCT
afs-46512	173	67	zhang	zhang	PROPN
afs-46512	173	68	,	,	PUNCT
afs-46512	173	69	y	y	PROPN
afs-46512	173	70	-	-	PROPN
afs-46512	173	71	p.	p.	PROPN
afs-46512	173	72	,	,	PUNCT
afs-46512	173	73	arranz	arranz	PROPN
afs-46512	173	74	,	,	PUNCT
afs-46512	173	75	j.j	j.j	PROPN
afs-46512	173	76	.	.	PROPN
afs-46512	173	77	,	,	PUNCT
afs-46512	173	78	ali	ali	PROPN
afs-46512	173	79	,	,	PUNCT
afs-46512	173	80	b.a	b.a	PROPN
afs-46512	173	81	.	.	PROPN
afs-46512	173	82	,	,	PUNCT
afs-46512	173	83	wang	wang	PROPN
afs-46512	173	84	,	,	PUNCT
afs-46512	173	85	z.	z.	PROPN
afs-46512	173	86	,	,	PUNCT
afs-46512	173	87	uzun	uzun	PROPN
afs-46512	173	88	,	,	PUNCT
afs-46512	173	89	m.	m.	NOUN
afs-46512	173	90	,	,	PUNCT
afs-46512	173	91	dione	dione	PROPN
afs-46512	173	92	,	,	PUNCT
afs-46512	173	93	m.m	m.m	PROPN
afs-46512	173	94	.	.	PROPN
afs-46512	173	95	,	,	PUNCT
afs-46512	173	96	olsaker	olsaker	PROPN
afs-46512	173	97	,	,	PUNCT
afs-46512	173	98	i.	i.	PROPN
afs-46512	173	99	,	,	PUNCT
afs-46512	173	100	holm	holm	PROPN
afs-46512	173	101	,	,	PUNCT
afs-46512	173	102	l	l	PROPN
afs-46512	173	103	-	-	NOUN
afs-46512	173	104	e.	e.	PROPN
afs-46512	173	105	,	,	PUNCT
afs-46512	173	106	saarma	saarma	PROPN
afs-46512	173	107	,	,	PUNCT
afs-46512	173	108	u.	u.	PROPN
afs-46512	173	109	,	,	PUNCT
afs-46512	173	110	ahmad	ahmad	PROPN
afs-46512	173	111	,	,	PUNCT
afs-46512	173	112	s.	s.	PROPN
afs-46512	173	113	,	,	PUNCT
afs-46512	173	114	marzanov	marzanov	PROPN
afs-46512	173	115	,	,	PUNCT
afs-46512	173	116	n.	n.	NOUN
afs-46512	173	117	,	,	PUNCT
afs-46512	173	118	eythorsdottir	eythorsdottir	PROPN
afs-46512	173	119	,	,	PUNCT
afs-46512	173	120	e.	e.	PROPN
afs-46512	173	121	,	,	PUNCT
afs-46512	173	122	holland	holland	PROPN
afs-46512	173	123	,	,	PUNCT
afs-46512	173	124	m.j	m.j	PROPN
afs-46512	173	125	.	.	PROPN
afs-46512	173	126	,	,	PUNCT
afs-46512	173	127	ajmone	ajmone	NOUN
afs-46512	173	128	-	-	PUNCT
afs-46512	173	129	marsan	marsan	NOUN
afs-46512	173	130	,	,	PUNCT
afs-46512	173	131	p.	p.	NOUN
afs-46512	173	132	,	,	PUNCT
afs-46512	173	133	bruford	bruford	PROPN
afs-46512	173	134	,	,	PUNCT
afs-46512	173	135	m.w	m.w	PROPN
afs-46512	173	136	.	.	PROPN
afs-46512	173	137	,	,	PUNCT
afs-46512	173	138	kantanen	kantanen	PROPN
afs-46512	173	139	,	,	PUNCT
afs-46512	173	140	j.	j.	PROPN
afs-46512	173	141	,	,	PUNCT
afs-46512	173	142	spencer	spencer	PROPN
afs-46512	173	143	,	,	PUNCT
afs-46512	173	144	t.e	t.e	PROPN
afs-46512	173	145	.	.	PROPN
afs-46512	173	146	&	&	CCONJ
afs-46512	173	147	palmarini	palmarini	PROPN
afs-46512	173	148	,	,	PUNCT
afs-46512	173	149	m.	m.	NOUN
afs-46512	173	150	2009	2009	NUM
afs-46512	173	151	.	.	PUNCT
afs-46512	174	1	revealing	reveal	VERB
afs-46512	174	2	the	the	DET
afs-46512	174	3	history	history	NOUN
afs-46512	174	4	of	of	ADP
afs-46512	174	5	sheep	sheep	NOUN
afs-46512	174	6	domestication	domestication	NOUN
afs-46512	174	7	using	use	VERB
afs-46512	174	8	retrovirus	retrovirus	NOUN
afs-46512	174	9	integrations	integration	NOUN
afs-46512	174	10	.	.	PUNCT
afs-46512	175	1	science	science	NOUN
afs-46512	175	2	324	324	NUM
afs-46512	175	3	:	:	PUNCT
afs-46512	175	4	532–536	532–536	NUM
afs-46512	175	5	.	.	PUNCT
afs-46512	175	6	doi:10.1126	doi:10.1126	NOUN
afs-46512	175	7	/	/	SYM
afs-46512	176	1	science.1170587	science.1170587	PROPN
afs-46512	176	2	conesa	conesa	NOUN
afs-46512	176	3	,	,	PUNCT
afs-46512	176	4	a.	a.	NOUN
afs-46512	176	5	,	,	PUNCT
afs-46512	176	6	götz	götz	PROPN
afs-46512	176	7	,	,	PUNCT
afs-46512	176	8	s.	s.	PROPN
afs-46512	176	9	,	,	PUNCT
afs-46512	176	10	garcía	garcía	ADJ
afs-46512	176	11	-	-	PUNCT
afs-46512	176	12	gómez	gómez	NOUN
afs-46512	176	13	,	,	PUNCT
afs-46512	176	14	j.m	j.m	PROPN
afs-46512	176	15	.	.	PROPN
afs-46512	176	16	,	,	PUNCT
afs-46512	176	17	terol	terol	NOUN
afs-46512	176	18	,	,	PUNCT
afs-46512	176	19	j.	j.	PROPN
afs-46512	176	20	,	,	PUNCT
afs-46512	176	21	talón	talón	PROPN
afs-46512	176	22	,	,	PUNCT
afs-46512	176	23	m.	m.	NOUN
afs-46512	176	24	&	&	CCONJ
afs-46512	176	25	robles	robles	PROPN
afs-46512	176	26	,	,	PUNCT
afs-46512	176	27	m.	m.	NOUN
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afs-46512	176	29	.	.	PUNCT
afs-46512	177	1	blast2go	blast2go	NOUN
afs-46512	177	2	:	:	PUNCT
afs-46512	177	3	a	a	DET
afs-46512	177	4	universal	universal	ADJ
afs-46512	177	5	tool	tool	NOUN
afs-46512	177	6	for	for	ADP
afs-46512	177	7	annotation	annotation	NOUN
afs-46512	177	8	,	,	PUNCT
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afs-46512	177	11	analysis	analysis	NOUN
afs-46512	177	12	in	in	ADP
afs-46512	177	13	functional	functional	ADJ
afs-46512	177	14	genomics	genomic	NOUN
afs-46512	177	15	research	research	NOUN
afs-46512	177	16	.	.	PUNCT
afs-46512	178	1	bioinformatics	bioinformatics	NOUN
afs-46512	178	2	21	21	NUM
afs-46512	178	3	:	:	SYM
afs-46512	178	4	3674–3676	3674–3676	NUM
afs-46512	178	5	.	.	PUNCT
afs-46512	178	6	doi:10.1093	doi:10.1093	NOUN
afs-46512	178	7	/	/	SYM
afs-46512	178	8	bioinformatics	bioinformatics	NOUN
afs-46512	178	9	/	/	SYM
afs-46512	178	10	bti610	bti610	PROPN
afs-46512	178	11	crumbie	crumbie	PROPN
afs-46512	178	12	,	,	PUNCT
afs-46512	178	13	a.	a.	NOUN
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afs-46512	178	15	.	.	PUNCT
afs-46512	179	1	the	the	DET
afs-46512	179	2	orf	orf	PROPN
afs-46512	179	3	virus	virus	PROPN
afs-46512	179	4	:	:	PUNCT
afs-46512	179	5	a	a	DET
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afs-46512	179	7	of	of	ADP
afs-46512	179	8	the	the	DET
afs-46512	179	9	farming	farming	NOUN
afs-46512	179	10	community	community	NOUN
afs-46512	179	11	.	.	PUNCT
afs-46512	180	1	community	community	NOUN
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afs-46512	180	4	:	:	PUNCT
afs-46512	180	5	44–45	44–45	NUM
afs-46512	180	6	.	.	PUNCT
afs-46512	181	1	retrieved	retrieve	VERB
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afs-46512	181	3	http://www	http://www	PROPN
afs-46512	181	4	.	.	PUNCT
afs-46512	182	1	ncbi.nlm.nih.gov/pubmed/9763971	ncbi.nlm.nih.gov/pubmed/9763971	PROPN
afs-46512	182	2	davis	davis	PROPN
afs-46512	182	3	,	,	PUNCT
afs-46512	182	4	g.h	g.h	PROPN
afs-46512	182	5	.	.	PROPN
afs-46512	182	6	2005	2005	NUM
afs-46512	182	7	.	.	PUNCT
afs-46512	183	1	major	major	ADJ
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afs-46512	183	4	ovulation	ovulation	NOUN
afs-46512	183	5	rate	rate	NOUN
afs-46512	183	6	in	in	ADP
afs-46512	183	7	sheep	sheep	NOUN
afs-46512	183	8	.	.	PUNCT
afs-46512	184	1	genetics	genetic	NOUN
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afs-46512	184	5	:	:	PUNCT
afs-46512	184	6	11–24	11–24	NUM
afs-46512	184	7	.	.	PUNCT
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afs-46512	185	2	/	/	SYM
afs-46512	185	3	gse	gse	ADJ
afs-46512	185	4	demars	demar	NOUN
afs-46512	185	5	,	,	PUNCT
afs-46512	185	6	j.	j.	PROPN
afs-46512	185	7	,	,	PUNCT
afs-46512	185	8	fabre	fabre	PROPN
afs-46512	185	9	,	,	PUNCT
afs-46512	185	10	s.	s.	PROPN
afs-46512	185	11	,	,	PUNCT
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afs-46512	185	14	j.	j.	PROPN
afs-46512	185	15	,	,	PUNCT
afs-46512	185	16	rossetti	rossetti	PROPN
afs-46512	185	17	,	,	PUNCT
afs-46512	185	18	r.	r.	PROPN
afs-46512	185	19	,	,	PUNCT
afs-46512	185	20	gilbert	gilbert	PROPN
afs-46512	185	21	,	,	PUNCT
afs-46512	185	22	h.	h.	PROPN
afs-46512	185	23	,	,	PUNCT
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afs-46512	185	25	,	,	PUNCT
afs-46512	185	26	l.	l.	PROPN
afs-46512	185	27	,	,	PUNCT
afs-46512	185	28	tosser	tosser	NOUN
afs-46512	185	29	-	-	PUNCT
afs-46512	185	30	klopp	klopp	PROPN
afs-46512	185	31	,	,	PUNCT
afs-46512	185	32	g.	g.	PROPN
afs-46512	185	33	,	,	PUNCT
afs-46512	185	34	mulsant	mulsant	PROPN
afs-46512	185	35	,	,	PUNCT
afs-46512	185	36	p.	p.	PROPN
afs-46512	185	37	,	,	PUNCT
afs-46512	185	38	nowak	nowak	PROPN
afs-46512	185	39	,	,	PUNCT
afs-46512	185	40	z.	z.	PROPN
afs-46512	185	41	,	,	PUNCT
afs-46512	185	42	drobik	drobik	PROPN
afs-46512	185	43	,	,	PUNCT
afs-46512	185	44	w.	w.	PROPN
afs-46512	185	45	,	,	PUNCT
afs-46512	185	46	martyniuk	martyniuk	PROPN
afs-46512	185	47	,	,	PUNCT
afs-46512	185	48	e.	e.	PROPN
afs-46512	185	49	&	&	CCONJ
afs-46512	185	50	bodin	bodin	PROPN
afs-46512	185	51	,	,	PUNCT
afs-46512	185	52	l.	l.	PROPN
afs-46512	185	53	2013	2013	NUM
afs-46512	185	54	.	.	PUNCT
afs-46512	186	1	genome	genome	NOUN
afs-46512	186	2	-	-	PUNCT
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afs-46512	186	4	association	association	NOUN
afs-46512	186	5	studies	study	NOUN
afs-46512	186	6	identify	identify	VERB
afs-46512	186	7	two	two	NUM
afs-46512	186	8	novel	novel	ADJ
afs-46512	186	9	bmp15	bmp15	PROPN
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afs-46512	186	11	responsible	responsible	ADJ
afs-46512	186	12	for	for	ADP
afs-46512	186	13	an	an	DET
afs-46512	186	14	atypical	atypical	ADJ
afs-46512	186	15	hyperprolificacy	hyperprolificacy	NOUN
afs-46512	186	16	phenotype	phenotype	NOUN
afs-46512	186	17	in	in	ADP
afs-46512	186	18	sheep	sheep	NOUN
afs-46512	186	19	.	.	PUNCT
afs-46512	187	1	plos	plos	PROPN
afs-46512	187	2	genetics	genetics	PROPN
afs-46512	187	3	9	9	NUM
afs-46512	187	4	:	:	PUNCT
afs-46512	187	5	e1003482	e1003482	NUM
afs-46512	187	6	.	.	PUNCT
afs-46512	187	7	doi:10.1371	doi:10.1371	PROPN
afs-46512	187	8	/	/	SYM
afs-46512	187	9	journal.pgen.1003482	journal.pgen.1003482	PROPN
afs-46512	187	10	dong	dong	PROPN
afs-46512	187	11	,	,	PUNCT
afs-46512	187	12	j.	j.	PROPN
afs-46512	187	13	,	,	PUNCT
afs-46512	187	14	albertini	albertini	PROPN
afs-46512	187	15	,	,	PUNCT
afs-46512	187	16	d.f	d.f	PROPN
afs-46512	187	17	.	.	PROPN
afs-46512	187	18	,	,	PUNCT
afs-46512	187	19	nishimori	nishimori	PROPN
afs-46512	187	20	,	,	PUNCT
afs-46512	187	21	k.	k.	PROPN
afs-46512	187	22	,	,	PUNCT
afs-46512	187	23	kumar	kumar	PROPN
afs-46512	187	24	,	,	PUNCT
afs-46512	187	25	t.r	t.r	PROPN
afs-46512	187	26	.	.	PROPN
afs-46512	187	27	,	,	PUNCT
afs-46512	187	28	lu	lu	PROPN
afs-46512	187	29	,	,	PUNCT
afs-46512	187	30	n.	n.	PROPN
afs-46512	187	31	&	&	CCONJ
afs-46512	187	32	matzuk	matzuk	PROPN
afs-46512	187	33	,	,	PUNCT
afs-46512	187	34	m.m	m.m	PROPN
afs-46512	187	35	.	.	PROPN
afs-46512	187	36	1996	1996	NUM
afs-46512	187	37	.	.	PUNCT
afs-46512	188	1	growth	growth	NOUN
afs-46512	188	2	differentiation	differentiation	NOUN
afs-46512	188	3	factor-9	factor-9	NUM
afs-46512	188	4	is	be	AUX
afs-46512	188	5	required	require	VERB
afs-46512	188	6	during	during	ADP
afs-46512	188	7	early	early	ADJ
afs-46512	188	8	ovarian	ovarian	ADJ
afs-46512	188	9	folliculogenesis	folliculogenesis	NOUN
afs-46512	188	10	.	.	PUNCT
afs-46512	189	1	nature	nature	NOUN
afs-46512	189	2	383	383	NUM
afs-46512	189	3	:	:	PUNCT
afs-46512	189	4	531–535	531–535	NUM
afs-46512	189	5	.	.	PUNCT
afs-46512	190	1	doi:10.1038/383531a0	doi:10.1038/383531a0	PROPN
afs-46512	190	2	dunlap	dunlap	PROPN
afs-46512	190	3	,	,	PUNCT
afs-46512	190	4	k.a	k.a	PROPN
afs-46512	190	5	.	.	PROPN
afs-46512	190	6	,	,	PUNCT
afs-46512	190	7	palmarini	palmarini	PROPN
afs-46512	190	8	,	,	PUNCT
afs-46512	190	9	m.	m.	NOUN
afs-46512	190	10	,	,	PUNCT
afs-46512	190	11	varela	varela	PROPN
afs-46512	190	12	,	,	PUNCT
afs-46512	190	13	m.	m.	NOUN
afs-46512	190	14	,	,	PUNCT
afs-46512	190	15	burghardt	burghardt	PROPN
afs-46512	190	16	,	,	PUNCT
afs-46512	191	1	r.c	r.c	PROPN
afs-46512	191	2	.	.	PROPN
afs-46512	191	3	,	,	PUNCT
afs-46512	191	4	hayashi	hayashi	PROPN
afs-46512	191	5	,	,	PUNCT
afs-46512	191	6	k.	k.	PROPN
afs-46512	191	7	,	,	PUNCT
afs-46512	191	8	farmer	farmer	PROPN
afs-46512	191	9	,	,	PUNCT
afs-46512	191	10	j.l	j.l	PROPN
afs-46512	191	11	.	.	PROPN
afs-46512	191	12	&	&	CCONJ
afs-46512	191	13	spencer	spencer	PROPN
afs-46512	191	14	,	,	PUNCT
afs-46512	191	15	t.e	t.e	PROPN
afs-46512	191	16	.	.	PROPN
afs-46512	191	17	2006	2006	NUM
afs-46512	191	18	.	.	PUNCT
afs-46512	192	1	endogenous	endogenous	ADJ
afs-46512	192	2	retroviruses	retrovirus	NOUN
afs-46512	192	3	regulate	regulate	VERB
afs-46512	192	4	periimplantation	periimplantation	NOUN
afs-46512	192	5	placental	placental	NOUN
afs-46512	192	6	growth	growth	NOUN
afs-46512	192	7	and	and	CCONJ
afs-46512	192	8	differentiation	differentiation	NOUN
afs-46512	192	9	.	.	PUNCT
afs-46512	193	1	proceedings	proceeding	NOUN
afs-46512	193	2	of	of	ADP
afs-46512	193	3	the	the	DET
afs-46512	193	4	national	national	PROPN
afs-46512	193	5	academy	academy	PROPN
afs-46512	193	6	of	of	ADP
afs-46512	193	7	sciences	sciences	PROPN
afs-46512	193	8	of	of	ADP
afs-46512	193	9	the	the	DET
afs-46512	193	10	united	united	PROPN
afs-46512	193	11	states	states	PROPN
afs-46512	193	12	of	of	ADP
afs-46512	193	13	america	america	PROPN
afs-46512	193	14	103	103	NUM
afs-46512	193	15	:	:	PUNCT
afs-46512	193	16	14390–14395	14390–14395	NUM
afs-46512	193	17	.	.	PUNCT
afs-46512	194	1	doi:10.1073	doi:10.1073	NOUN
afs-46512	194	2	/	/	SYM
afs-46512	194	3	pnas.0603836103	pnas.0603836103	PROPN
afs-46512	194	4	eppig	eppig	NOUN
afs-46512	194	5	,	,	PUNCT
afs-46512	194	6	j.	j.	PROPN
afs-46512	194	7	2001	2001	PROPN
afs-46512	194	8	.	.	PUNCT
afs-46512	195	1	oocyte	oocyte	ADJ
afs-46512	195	2	control	control	NOUN
afs-46512	195	3	of	of	ADP
afs-46512	195	4	ovarian	ovarian	ADJ
afs-46512	195	5	follicular	follicular	ADJ
afs-46512	195	6	development	development	NOUN
afs-46512	195	7	and	and	CCONJ
afs-46512	195	8	function	function	NOUN
afs-46512	195	9	in	in	ADP
afs-46512	195	10	mammals	mammal	NOUN
afs-46512	195	11	.	.	PUNCT
afs-46512	196	1	reproduction	reproduction	NOUN
afs-46512	196	2	122	122	NUM
afs-46512	196	3	:	:	PUNCT
afs-46512	196	4	829–838	829–838	NUM
afs-46512	196	5	.	.	PUNCT
afs-46512	197	1	doi:10.1530/	doi:10.1530/	PROPN
afs-46512	197	2	rep.0.1220829	rep.0.1220829	PROPN
afs-46512	197	3	fahmy	fahmy	PROPN
afs-46512	197	4	,	,	PUNCT
afs-46512	197	5	m.h	m.h	PROPN
afs-46512	197	6	.	.	PROPN
afs-46512	197	7	&	&	CCONJ
afs-46512	197	8	dufour	dufour	PROPN
afs-46512	197	9	,	,	PUNCT
afs-46512	197	10	j.j	j.j	PROPN
afs-46512	197	11	.	.	PROPN
afs-46512	197	12	1988	1988	NUM
afs-46512	197	13	.	.	PUNCT
afs-46512	198	1	the	the	DET
afs-46512	198	2	accumulative	accumulative	ADJ
afs-46512	198	3	effect	effect	NOUN
afs-46512	198	4	of	of	ADP
afs-46512	198	5	finnsheep	finnsheep	ADJ
afs-46512	198	6	breeding	breeding	NOUN
afs-46512	198	7	in	in	ADP
afs-46512	198	8	crossbreeding	crossbreed	VERB
afs-46512	198	9	schemes	scheme	NOUN
afs-46512	198	10	:	:	PUNCT
afs-46512	198	11	reproductive	reproductive	ADJ
afs-46512	198	12	performance	performance	NOUN
afs-46512	198	13	.	.	PUNCT
afs-46512	199	1	canadian	canadian	ADJ
afs-46512	199	2	journal	journal	NOUN
afs-46512	199	3	of	of	ADP
afs-46512	199	4	animal	animal	NOUN
afs-46512	199	5	science	science	NOUN
afs-46512	199	6	68	68	NUM
afs-46512	199	7	:	:	PUNCT
afs-46512	199	8	69–81	69–81	NUM
afs-46512	199	9	.	.	PUNCT
afs-46512	200	1	doi:10.4141	doi:10.4141	NOUN
afs-46512	200	2	/	/	SYM
afs-46512	200	3	cjas88	cjas88	NOUN
afs-46512	200	4	-	-	PUNCT
afs-46512	200	5	007	007	NUM
afs-46512	200	6	fogarty	fogarty	PROPN
afs-46512	200	7	,	,	PUNCT
afs-46512	200	8	n.m	n.m	PROPN
afs-46512	200	9	.	.	PROPN
afs-46512	200	10	2009	2009	NUM
afs-46512	200	11	.	.	PUNCT
afs-46512	201	1	a	a	DET
afs-46512	201	2	review	review	NOUN
afs-46512	201	3	of	of	ADP
afs-46512	201	4	the	the	DET
afs-46512	201	5	effects	effect	NOUN
afs-46512	201	6	of	of	ADP
afs-46512	201	7	the	the	DET
afs-46512	201	8	booroola	booroola	PROPN
afs-46512	201	9	gene	gene	NOUN
afs-46512	201	10	(	(	PUNCT
afs-46512	201	11	fecb	fecb	NOUN
afs-46512	201	12	)	)	PUNCT
afs-46512	201	13	on	on	ADP
afs-46512	201	14	sheep	sheep	NOUN
afs-46512	201	15	production	production	NOUN
afs-46512	201	16	.	.	PUNCT
afs-46512	202	1	small	small	ADJ
afs-46512	202	2	ruminant	ruminant	PROPN
afs-46512	202	3	research	research	NOUN
afs-46512	202	4	85	85	NUM
afs-46512	202	5	:	:	PUNCT
afs-46512	202	6	75	75	NUM
afs-46512	202	7	–	–	PUNCT
afs-46512	202	8	84	84	NUM
afs-46512	202	9	.	.	PUNCT
afs-46512	203	1	doi:10.1016	doi:10.1016	PROPN
afs-46512	203	2	/	/	SYM
afs-46512	203	3	j.smallrumres.2009.08.003	j.smallrumres.2009.08.003	PROPN
afs-46512	203	4	galloway	galloway	PROPN
afs-46512	203	5	,	,	PUNCT
afs-46512	203	6	s.m	s.m	PROPN
afs-46512	203	7	.	.	PROPN
afs-46512	203	8	,	,	PUNCT
afs-46512	203	9	mcnatty	mcnatty	PROPN
afs-46512	203	10	,	,	PUNCT
afs-46512	203	11	k.p	k.p	PROPN
afs-46512	203	12	.	.	PROPN
afs-46512	203	13	,	,	PUNCT
afs-46512	203	14	cambridge	cambridge	PROPN
afs-46512	203	15	,	,	PUNCT
afs-46512	203	16	l.m	l.m	PROPN
afs-46512	203	17	.	.	PROPN
afs-46512	203	18	,	,	PUNCT
afs-46512	203	19	laitinen	laitinen	PROPN
afs-46512	203	20	,	,	PUNCT
afs-46512	203	21	m.p	m.p	PROPN
afs-46512	203	22	.	.	PROPN
afs-46512	203	23	,	,	PUNCT
afs-46512	203	24	juengel	juengel	PROPN
afs-46512	203	25	,	,	PUNCT
afs-46512	203	26	j.l	j.l	PROPN
afs-46512	203	27	.	.	PROPN
afs-46512	203	28	,	,	PUNCT
afs-46512	203	29	jokiranta	jokiranta	PROPN
afs-46512	203	30	,	,	PUNCT
afs-46512	203	31	t.s	t.s	PROPN
afs-46512	203	32	.	.	PROPN
afs-46512	203	33	,	,	PUNCT
afs-46512	203	34	mclaren	mclaren	PROPN
afs-46512	203	35	,	,	PUNCT
afs-46512	203	36	r.j	r.j	PROPN
afs-46512	203	37	.	.	PROPN
afs-46512	203	38	,	,	PUNCT
afs-46512	203	39	luiro	luiro	PROPN
afs-46512	203	40	,	,	PUNCT
afs-46512	203	41	k.	k.	PROPN
afs-46512	203	42	,	,	PUNCT
afs-46512	203	43	dodds	dodds	PROPN
afs-46512	203	44	,	,	PUNCT
afs-46512	203	45	k.g	k.g	PROPN
afs-46512	203	46	.	.	PROPN
afs-46512	203	47	,	,	PUNCT
afs-46512	203	48	montogomery	montogomery	PROPN
afs-46512	203	49	,	,	PUNCT
afs-46512	203	50	g.w	g.w	PROPN
afs-46512	203	51	.	.	PROPN
afs-46512	203	52	,	,	PUNCT
afs-46512	203	53	beattie	beattie	PROPN
afs-46512	203	54	,	,	PUNCT
afs-46512	203	55	a.e	a.e	PROPN
afs-46512	203	56	.	.	PROPN
afs-46512	203	57	,	,	PUNCT
afs-46512	203	58	davis	davis	PROPN
afs-46512	203	59	,	,	PUNCT
afs-46512	203	60	g.h	g.h	PROPN
afs-46512	203	61	.	.	PROPN
afs-46512	203	62	&	&	CCONJ
afs-46512	203	63	ritvos	ritvos	PROPN
afs-46512	203	64	,	,	PUNCT
afs-46512	203	65	o.	o.	NOUN
afs-46512	203	66	2000	2000	NUM
afs-46512	203	67	.	.	PUNCT
afs-46512	204	1	mutations	mutation	NOUN
afs-46512	204	2	in	in	ADP
afs-46512	204	3	an	an	DET
afs-46512	204	4	oocyte	oocyte	ADJ
afs-46512	204	5	-	-	PUNCT
afs-46512	204	6	derived	derive	VERB
afs-46512	204	7	growth	growth	NOUN
afs-46512	204	8	factor	factor	NOUN
afs-46512	204	9	gene	gene	NOUN
afs-46512	204	10	(	(	PUNCT
afs-46512	204	11	bmp15	bmp15	PROPN
afs-46512	204	12	)	)	PUNCT
afs-46512	204	13	cause	cause	VERB
afs-46512	204	14	increased	increase	VERB
afs-46512	204	15	ovulation	ovulation	NOUN
afs-46512	204	16	rate	rate	NOUN
afs-46512	204	17	and	and	CCONJ
afs-46512	204	18	infertility	infertility	NOUN
afs-46512	204	19	in	in	ADP
afs-46512	204	20	a	a	DET
afs-46512	204	21	dosage	dosage	NOUN
afs-46512	204	22	-	-	PUNCT
afs-46512	204	23	sensitive	sensitive	ADJ
afs-46512	204	24	manner	manner	NOUN
afs-46512	204	25	.	.	PUNCT
afs-46512	205	1	nature	nature	NOUN
afs-46512	205	2	genetics	genetics	PROPN
afs-46512	205	3	25	25	NUM
afs-46512	205	4	:	:	PUNCT
afs-46512	205	5	279–83	279–83	NUM
afs-46512	205	6	.	.	PUNCT
afs-46512	206	1	doi:10.1038/77033	doi:10.1038/77033	NOUN
afs-46512	206	2	husseneder	husseneder	PROPN
afs-46512	206	3	,	,	PUNCT
afs-46512	206	4	c.	c.	PROPN
afs-46512	206	5	,	,	PUNCT
afs-46512	206	6	mcgregor	mcgregor	PROPN
afs-46512	206	7	,	,	PUNCT
afs-46512	206	8	c.	c.	PROPN
afs-46512	206	9	,	,	PUNCT
afs-46512	206	10	lang	lang	PROPN
afs-46512	206	11	,	,	PUNCT
afs-46512	206	12	r.p	r.p	PROPN
afs-46512	206	13	.	.	PROPN
afs-46512	206	14	,	,	PUNCT
afs-46512	206	15	collier	collier	PROPN
afs-46512	206	16	,	,	PUNCT
afs-46512	206	17	r.	r.	PROPN
afs-46512	206	18	&	&	CCONJ
afs-46512	206	19	delatte	delatte	PROPN
afs-46512	206	20	,	,	PUNCT
afs-46512	206	21	j.	j.	PROPN
afs-46512	206	22	2012	2012	NUM
afs-46512	206	23	.	.	PUNCT
afs-46512	207	1	transcriptome	transcriptome	ADJ
afs-46512	207	2	profiling	profiling	NOUN
afs-46512	207	3	of	of	ADP
afs-46512	207	4	female	female	ADJ
afs-46512	207	5	alates	alate	NOUN
afs-46512	207	6	and	and	CCONJ
afs-46512	207	7	egg	egg	NOUN
afs-46512	207	8	-	-	PUNCT
afs-46512	207	9	laying	lay	VERB
afs-46512	207	10	queens	queen	NOUN
afs-46512	207	11	of	of	ADP
afs-46512	207	12	the	the	DET
afs-46512	207	13	formosan	formosan	ADJ
afs-46512	207	14	subterranean	subterranean	ADJ
afs-46512	207	15	termite	termite	NOUN
afs-46512	207	16	.	.	PUNCT
afs-46512	208	1	comparative	comparative	ADJ
afs-46512	208	2	biochemistry	biochemistry	NOUN
afs-46512	208	3	and	and	CCONJ
afs-46512	208	4	physiology	physiology	NOUN
afs-46512	208	5	.	.	PUNCT
afs-46512	209	1	part	part	NOUN
afs-46512	209	2	d	d	PROPN
afs-46512	209	3	,	,	PUNCT
afs-46512	209	4	genomics	genomics	NOUN
afs-46512	209	5	&	&	CCONJ
afs-46512	209	6	proteomics	proteomic	NOUN
afs-46512	209	7	7	7	NUM
afs-46512	209	8	:	:	SYM
afs-46512	209	9	14	14	NUM
afs-46512	209	10	–	–	SYM
afs-46512	209	11	27	27	NUM
afs-46512	209	12	.	.	PUNCT
afs-46512	209	13	doi:10.1016	doi:10.1016	PROPN
afs-46512	209	14	/	/	SYM
afs-46512	209	15	j.cbd.2011.10.002	j.cbd.2011.10.002	PROPN
afs-46512	209	16	kim	kim	PROPN
afs-46512	209	17	,	,	PUNCT
afs-46512	209	18	d.	d.	PROPN
afs-46512	209	19	,	,	PUNCT
afs-46512	209	20	pertea	pertea	NOUN
afs-46512	209	21	,	,	PUNCT
afs-46512	209	22	g.	g.	PROPN
afs-46512	209	23	,	,	PUNCT
afs-46512	209	24	trapnell	trapnell	INTJ
afs-46512	209	25	,	,	PUNCT
afs-46512	209	26	c.	c.	PROPN
afs-46512	209	27	,	,	PUNCT
afs-46512	209	28	pimentel	pimentel	PROPN
afs-46512	209	29	,	,	PUNCT
afs-46512	209	30	h.	h.	PROPN
afs-46512	209	31	,	,	PUNCT
afs-46512	209	32	kelley	kelley	PROPN
afs-46512	209	33	,	,	PUNCT
afs-46512	209	34	r.	r.	PROPN
afs-46512	209	35	&	&	CCONJ
afs-46512	209	36	salzberg	salzberg	PROPN
afs-46512	209	37	,	,	PUNCT
afs-46512	209	38	s.	s.	PROPN
afs-46512	209	39	l.	l.	PROPN
afs-46512	209	40	2013	2013	NUM
afs-46512	209	41	.	.	PUNCT
afs-46512	210	1	tophat2	tophat2	NOUN
afs-46512	210	2	:	:	PUNCT
afs-46512	210	3	accurate	accurate	ADJ
afs-46512	210	4	alignment	alignment	NOUN
afs-46512	210	5	of	of	ADP
afs-46512	210	6	transcriptomes	transcriptome	NOUN
afs-46512	210	7	in	in	ADP
afs-46512	210	8	the	the	DET
afs-46512	210	9	presence	presence	NOUN
afs-46512	210	10	of	of	ADP
afs-46512	210	11	insertions	insertion	NOUN
afs-46512	210	12	,	,	PUNCT
afs-46512	210	13	deletions	deletion	NOUN
afs-46512	210	14	and	and	CCONJ
afs-46512	210	15	gene	gene	NOUN
afs-46512	210	16	fusions	fusion	NOUN
afs-46512	210	17	.	.	PUNCT
afs-46512	211	1	genome	genome	NOUN
afs-46512	211	2	biology	biology	NOUN
afs-46512	211	3	14	14	NUM
afs-46512	211	4	:	:	PUNCT
afs-46512	211	5	r36	r36	PROPN
afs-46512	211	6	.	.	PUNCT
afs-46512	212	1	doi:10.1186	doi:10.1186	PROPN
afs-46512	212	2	/	/	SYM
afs-46512	212	3	gb-2013	gb-2013	NOUN
afs-46512	212	4	-	-	PUNCT
afs-46512	212	5	14	14	NUM
afs-46512	212	6	-	-	PUNCT
afs-46512	212	7	4	4	NUM
afs-46512	212	8	-	-	PUNCT
afs-46512	212	9	r36	r36	NOUN
afs-46512	212	10	kinsella	kinsella	PROPN
afs-46512	212	11	,	,	PUNCT
afs-46512	212	12	r.j	r.j	PROPN
afs-46512	212	13	.	.	PROPN
afs-46512	212	14	,	,	PUNCT
afs-46512	212	15	kähäri	kähäri	PROPN
afs-46512	212	16	,	,	PUNCT
afs-46512	212	17	a.	a.	NOUN
afs-46512	212	18	,	,	PUNCT
afs-46512	212	19	haider	haider	PROPN
afs-46512	212	20	,	,	PUNCT
afs-46512	212	21	s.	s.	PROPN
afs-46512	212	22	,	,	PUNCT
afs-46512	212	23	zamora	zamora	PROPN
afs-46512	212	24	,	,	PUNCT
afs-46512	212	25	j.	j.	PROPN
afs-46512	212	26	,	,	PUNCT
afs-46512	212	27	proctor	proctor	PROPN
afs-46512	212	28	,	,	PUNCT
afs-46512	212	29	g.	g.	PROPN
afs-46512	212	30	,	,	PUNCT
afs-46512	212	31	spudich	spudich	NOUN
afs-46512	212	32	,	,	PUNCT
afs-46512	212	33	g.	g.	PROPN
afs-46512	212	34	,	,	PUNCT
afs-46512	212	35	almeida	almeida	PROPN
afs-46512	212	36	-	-	PUNCT
afs-46512	212	37	king	king	PROPN
afs-46512	212	38	,	,	PUNCT
afs-46512	212	39	j.	j.	PROPN
afs-46512	212	40	,	,	PUNCT
afs-46512	212	41	staines	staine	NOUN
afs-46512	212	42	,	,	PUNCT
afs-46512	212	43	d.	d.	PROPN
afs-46512	212	44	,	,	PUNCT
afs-46512	212	45	derwent	derwent	PROPN
afs-46512	212	46	,	,	PUNCT
afs-46512	212	47	p.	p.	PROPN
afs-46512	212	48	,	,	PUNCT
afs-46512	212	49	kerhornou	kerhornou	PROPN
afs-46512	212	50	,	,	PUNCT
afs-46512	212	51	a.	a.	PROPN
afs-46512	212	52	,	,	PUNCT
afs-46512	212	53	kersey	kersey	PROPN
afs-46512	212	54	,	,	PUNCT
afs-46512	212	55	p.	p.	PROPN
afs-46512	212	56	&	&	CCONJ
afs-46512	212	57	flicek	flicek	PROPN
afs-46512	212	58	,	,	PUNCT
afs-46512	212	59	p.	p.	NOUN
afs-46512	212	60	2011	2011	NUM
afs-46512	212	61	.	.	PUNCT
afs-46512	213	1	ensembl	ensembl	PROPN
afs-46512	213	2	biomarts	biomarts	PROPN
afs-46512	213	3	:	:	PUNCT
afs-46512	213	4	a	a	DET
afs-46512	213	5	hub	hub	NOUN
afs-46512	213	6	for	for	ADP
afs-46512	213	7	data	datum	NOUN
afs-46512	213	8	retrieval	retrieval	NOUN
afs-46512	213	9	across	across	ADP
afs-46512	213	10	taxonomic	taxonomic	ADJ
afs-46512	213	11	space	space	NOUN
afs-46512	213	12	.	.	PUNCT
afs-46512	214	1	database	database	NOUN
afs-46512	214	2	 	 	SPACE
afs-46512	214	3	:	:	PUNCT
afs-46512	214	4	the	the	DET
afs-46512	214	5	journal	journal	NOUN
afs-46512	214	6	of	of	ADP
afs-46512	214	7	biological	biological	ADJ
afs-46512	214	8	databases	database	NOUN
afs-46512	214	9	and	and	CCONJ
afs-46512	214	10	curation	curation	NOUN
afs-46512	214	11	2011	2011	NUM
afs-46512	214	12	:	:	PUNCT
afs-46512	214	13	bar030	bar030	PROPN
afs-46512	214	14	.	.	PUNCT
afs-46512	215	1	doi:10.1093	doi:10.1093	NOUN
afs-46512	215	2	/	/	SYM
afs-46512	215	3	database	database	PROPN
afs-46512	215	4	/	/	SYM
afs-46512	215	5	bar030	bar030	PROPN
afs-46512	215	6	koskela	koskela	PROPN
afs-46512	215	7	,	,	PUNCT
afs-46512	215	8	h.l.m	h.l.m	NOUN
afs-46512	215	9	.	.	PROPN
afs-46512	215	10	,	,	PUNCT
afs-46512	215	11	eldfors	eldfor	NOUN
afs-46512	215	12	,	,	PUNCT
afs-46512	215	13	s.	s.	PROPN
afs-46512	215	14	,	,	PUNCT
afs-46512	215	15	ellonen	ellonen	PROPN
afs-46512	215	16	,	,	PUNCT
afs-46512	216	1	p.	p.	PROPN
afs-46512	216	2	,	,	PUNCT
afs-46512	216	3	van	van	PROPN
afs-46512	216	4	adrichem	adrichem	PROPN
afs-46512	216	5	,	,	PUNCT
afs-46512	216	6	a.j	a.j	PROPN
afs-46512	216	7	.	.	PROPN
afs-46512	216	8	,	,	PUNCT
afs-46512	216	9	kuusanmäki	kuusanmäki	PROPN
afs-46512	216	10	,	,	PUNCT
afs-46512	216	11	h.	h.	PROPN
afs-46512	216	12	,	,	PUNCT
afs-46512	216	13	andersson	andersson	PROPN
afs-46512	216	14	,	,	PUNCT
afs-46512	216	15	e.i	e.i	PROPN
afs-46512	216	16	.	.	PROPN
afs-46512	216	17	,	,	PUNCT
afs-46512	216	18	lagström	lagström	PROPN
afs-46512	216	19	,	,	PUNCT
afs-46512	216	20	s.	s.	PROPN
afs-46512	216	21	,	,	PUNCT
afs-46512	216	22	clemente	clemente	PROPN
afs-46512	216	23	,	,	PUNCT
afs-46512	216	24	m.j	m.j	PROPN
afs-46512	216	25	.	.	PROPN
afs-46512	216	26	,	,	PUNCT
afs-46512	216	27	olson	olson	PROPN
afs-46512	216	28	,	,	PUNCT
afs-46512	216	29	t.	t.	PROPN
afs-46512	216	30	,	,	PUNCT
afs-46512	216	31	jalkanen	jalkanen	PROPN
afs-46512	216	32	,	,	PUNCT
afs-46512	216	33	s.e	s.e	PROPN
afs-46512	216	34	.	.	PROPN
afs-46512	216	35	,	,	PUNCT
afs-46512	216	36	majumder	majumder	PROPN
afs-46512	216	37	,	,	PUNCT
afs-46512	216	38	m.m	m.m	PROPN
afs-46512	216	39	.	.	PROPN
afs-46512	216	40	,	,	PUNCT
afs-46512	216	41	almusa	almusa	PROPN
afs-46512	216	42	,	,	PUNCT
afs-46512	216	43	h.	h.	PROPN
afs-46512	216	44	,	,	PUNCT
afs-46512	216	45	edgren	edgren	PROPN
afs-46512	216	46	,	,	PUNCT
afs-46512	216	47	h.	h.	PROPN
afs-46512	216	48	,	,	PUNCT
afs-46512	216	49	lepistö	lepistö	PROPN
afs-46512	216	50	,	,	PUNCT
afs-46512	216	51	m.	m.	NOUN
afs-46512	216	52	,	,	PUNCT
afs-46512	216	53	mattila	mattila	NOUN
afs-46512	216	54	,	,	PUNCT
afs-46512	216	55	p.	p.	NOUN
afs-46512	216	56	,	,	PUNCT
afs-46512	216	57	guinta	guinta	PROPN
afs-46512	216	58	,	,	PUNCT
afs-46512	216	59	k.	k.	PROPN
afs-46512	216	60	,	,	PUNCT
afs-46512	216	61	koistinen	koistinen	PROPN
afs-46512	216	62	,	,	PUNCT
afs-46512	216	63	p.	p.	PROPN
afs-46512	216	64	,	,	PUNCT
afs-46512	216	65	kuittinen	kuittinen	PROPN
afs-46512	216	66	,	,	PUNCT
afs-46512	216	67	t.	t.	PROPN
afs-46512	216	68	,	,	PUNCT
afs-46512	216	69	penttinen	penttinen	PROPN
afs-46512	216	70	,	,	PUNCT
afs-46512	216	71	k.	k.	PROPN
afs-46512	216	72	,	,	PUNCT
afs-46512	216	73	parsons	parson	NOUN
afs-46512	216	74	,	,	PUNCT
afs-46512	216	75	a.	a.	NOUN
afs-46512	216	76	,	,	PUNCT
afs-46512	216	77	knowles	knowles	PROPN
afs-46512	216	78	,	,	PUNCT
afs-46512	216	79	j.	j.	PROPN
afs-46512	216	80	,	,	PUNCT
afs-46512	216	81	saarela	saarela	PROPN
afs-46512	216	82	,	,	PUNCT
afs-46512	216	83	j.	j.	PROPN
afs-46512	216	84	,	,	PUNCT
afs-46512	216	85	wennerberg	wennerberg	PROPN
afs-46512	216	86	,	,	PUNCT
afs-46512	216	87	k.	k.	PROPN
afs-46512	216	88	,	,	PUNCT
afs-46512	216	89	kallioniemi	kallioniemi	PROPN
afs-46512	216	90	,	,	PUNCT
afs-46512	216	91	o.	o.	INTJ
afs-46512	216	92	,	,	PUNCT
afs-46512	216	93	porkka	porkka	PROPN
afs-46512	216	94	,	,	PUNCT
afs-46512	216	95	k.	k.	PROPN
afs-46512	216	96	,	,	PUNCT
afs-46512	216	97	loughran	loughran	NOUN
afs-46512	216	98	,	,	PUNCT
afs-46512	216	99	t.p	t.p	PROPN
afs-46512	216	100	.	.	PROPN
afs-46512	216	101	,	,	PUNCT
afs-46512	216	102	heckman	heckman	PROPN
afs-46512	216	103	,	,	PUNCT
afs-46512	216	104	c.a	c.a	PROPN
afs-46512	216	105	.	.	PROPN
afs-46512	216	106	,	,	PUNCT
afs-46512	216	107	maciejewski	maciejewski	PROPN
afs-46512	216	108	,	,	PUNCT
afs-46512	216	109	j.p	j.p	PROPN
afs-46512	216	110	.	.	PROPN
afs-46512	216	111	&	&	CCONJ
afs-46512	216	112	mustjoki	mustjoki	PROPN
afs-46512	216	113	,	,	PUNCT
afs-46512	216	114	s.	s.	PROPN
afs-46512	216	115	2012	2012	NUM
afs-46512	216	116	.	.	PUNCT
afs-46512	217	1	somatic	somatic	ADJ
afs-46512	217	2	stat3	stat3	NOUN
afs-46512	217	3	mutations	mutation	NOUN
afs-46512	217	4	in	in	ADP
afs-46512	217	5	large	large	ADJ
afs-46512	217	6	granular	granular	ADJ
afs-46512	217	7	lymphocytic	lymphocytic	ADJ
afs-46512	217	8	leukemia	leukemia	NOUN
afs-46512	217	9	.	.	PUNCT
afs-46512	218	1	the	the	DET
afs-46512	218	2	new	new	PROPN
afs-46512	218	3	england	england	PROPN
afs-46512	218	4	journal	journal	PROPN
afs-46512	218	5	of	of	ADP
afs-46512	218	6	medicine	medicine	NOUN
afs-46512	218	7	366	366	NUM
afs-46512	218	8	:	:	PUNCT
afs-46512	218	9	1905–1913	1905–1913	NUM
afs-46512	218	10	.	.	PUNCT
afs-46512	218	11	doi:10.1056	doi:10.1056	PROPN
afs-46512	218	12	/	/	SYM
afs-46512	218	13	nejmoa1114885	nejmoa1114885	PROPN
afs-46512	218	14	li	li	PROPN
afs-46512	218	15	,	,	PUNCT
afs-46512	218	16	m.-h	m.-h	PROPN
afs-46512	218	17	.	.	PROPN
afs-46512	218	18	,	,	PUNCT
afs-46512	218	19	strandén	strandén	PROPN
afs-46512	218	20	,	,	PUNCT
afs-46512	218	21	i.	i.	NOUN
afs-46512	218	22	,	,	PUNCT
afs-46512	218	23	tiirikka	tiirikka	NOUN
afs-46512	218	24	,	,	PUNCT
afs-46512	218	25	t.	t.	NOUN
afs-46512	218	26	,	,	PUNCT
afs-46512	218	27	sevón	sevón	NOUN
afs-46512	218	28	-	-	PUNCT
afs-46512	218	29	aimonen	aimonen	NOUN
afs-46512	218	30	,	,	PUNCT
afs-46512	218	31	m.-l	m.-l	PROPN
afs-46512	218	32	.	.	PUNCT
afs-46512	219	1	&	&	CCONJ
afs-46512	219	2	kantanen	kantanen	PROPN
afs-46512	219	3	,	,	PUNCT
afs-46512	219	4	j.	j.	PROPN
afs-46512	219	5	2011	2011	NUM
afs-46512	219	6	.	.	PUNCT
afs-46512	220	1	a	a	DET
afs-46512	220	2	comparison	comparison	NOUN
afs-46512	220	3	of	of	ADP
afs-46512	220	4	approaches	approach	NOUN
afs-46512	220	5	to	to	PART
afs-46512	220	6	estimate	estimate	VERB
afs-46512	220	7	the	the	DET
afs-46512	220	8	inbreeding	inbreede	VERB
afs-46512	220	9	coefficient	coefficient	NOUN
afs-46512	220	10	and	and	CCONJ
afs-46512	220	11	pairwise	pairwise	NOUN
afs-46512	220	12	relatedness	relatedness	NOUN
afs-46512	220	13	using	use	VERB
afs-46512	220	14	genomic	genomic	NOUN
afs-46512	220	15	and	and	CCONJ
afs-46512	220	16	pedigree	pedigree	ADJ
afs-46512	220	17	data	datum	NOUN
afs-46512	220	18	in	in	ADP
afs-46512	220	19	a	a	DET
afs-46512	220	20	sheep	sheep	NOUN
afs-46512	220	21	population	population	NOUN
afs-46512	220	22	.	.	PUNCT
afs-46512	221	1	plos	plos	PROPN
afs-46512	221	2	one	one	NUM
afs-46512	221	3	6	6	NUM
afs-46512	221	4	:	:	PUNCT
afs-46512	221	5	e26256	e26256	PROPN
afs-46512	221	6	.	.	PUNCT
afs-46512	221	7	doi:10.1371	doi:10.1371	PROPN
afs-46512	221	8	/	/	SYM
afs-46512	222	1	journal.pone.0026256	journal.pone.0026256	PROPN
afs-46512	222	2	maijala	maijala	PROPN
afs-46512	222	3	,	,	PUNCT
afs-46512	222	4	k.	k.	PROPN
afs-46512	222	5	1988	1988	NUM
afs-46512	222	6	.	.	PUNCT
afs-46512	223	1	history	history	NOUN
afs-46512	223	2	,	,	PUNCT
afs-46512	223	3	recent	recent	ADJ
afs-46512	223	4	development	development	NOUN
afs-46512	223	5	and	and	CCONJ
afs-46512	223	6	uses	use	NOUN
afs-46512	223	7	of	of	ADP
afs-46512	223	8	finnsheep	finnsheep	ADJ
afs-46512	223	9	.	.	PUNCT
afs-46512	224	1	journal	journal	NOUN
afs-46512	224	2	of	of	ADP
afs-46512	224	3	agricultural	agricultural	ADJ
afs-46512	224	4	science	science	NOUN
afs-46512	224	5	finland	finland	PROPN
afs-46512	224	6	60	60	NUM
afs-46512	224	7	:	:	PUNCT
afs-46512	225	1	449–454	449–454	NUM
afs-46512	225	2	.	.	PUNCT
afs-46512	226	1	maijala	maijala	PROPN
afs-46512	226	2	,	,	PUNCT
afs-46512	226	3	k.	k.	PROPN
afs-46512	226	4	&	&	CCONJ
afs-46512	226	5	österberg	österberg	PROPN
afs-46512	226	6	,	,	PUNCT
afs-46512	226	7	s.	s.	PROPN
afs-46512	226	8	1977	1977	NUM
afs-46512	226	9	.	.	PUNCT
afs-46512	227	1	productivity	productivity	NOUN
afs-46512	227	2	of	of	ADP
afs-46512	227	3	pure	pure	ADJ
afs-46512	227	4	finnsheep	finnsheep	NOUN
afs-46512	227	5	in	in	ADP
afs-46512	227	6	finland	finland	PROPN
afs-46512	227	7	and	and	CCONJ
afs-46512	227	8	abroad	abroad	ADV
afs-46512	227	9	.	.	PUNCT
afs-46512	228	1	livestock	livestock	NOUN
afs-46512	228	2	production	production	NOUN
afs-46512	228	3	science	science	NOUN
afs-46512	228	4	4	4	NUM
afs-46512	228	5	:	:	PUNCT
afs-46512	228	6	355–377	355–377	NUM
afs-46512	228	7	.	.	PUNCT
afs-46512	229	1	doi:10.1016/0301	doi:10.1016/0301	NOUN
afs-46512	229	2	-	-	PUNCT
afs-46512	229	3	6226(77)90006	6226(77)90006	NUM
afs-46512	229	4	-	-	SYM
afs-46512	229	5	9	9	NUM
afs-46512	229	6	mateescu	mateescu	NOUN
afs-46512	229	7	,	,	PUNCT
afs-46512	229	8	r.g	r.g	PROPN
afs-46512	229	9	.	.	PROPN
afs-46512	229	10	&	&	CCONJ
afs-46512	229	11	thonney	thonney	PROPN
afs-46512	229	12	,	,	PUNCT
afs-46512	229	13	m.l	m.l	PROPN
afs-46512	229	14	.	.	PROPN
afs-46512	229	15	2010	2010	NUM
afs-46512	229	16	.	.	PUNCT
afs-46512	230	1	genetic	genetic	ADJ
afs-46512	230	2	mapping	mapping	NOUN
afs-46512	230	3	of	of	ADP
afs-46512	230	4	quantitative	quantitative	ADJ
afs-46512	230	5	trait	trait	NOUN
afs-46512	230	6	loci	locus	NOUN
afs-46512	230	7	for	for	ADP
afs-46512	230	8	aseasonal	aseasonal	ADJ
afs-46512	230	9	reproduction	reproduction	NOUN
afs-46512	230	10	in	in	ADP
afs-46512	230	11	sheep	sheep	NOUN
afs-46512	230	12	.	.	PUNCT
afs-46512	231	1	animal	animal	NOUN
afs-46512	231	2	genetics	genetic	NOUN
afs-46512	231	3	41	41	NUM
afs-46512	231	4	:	:	PUNCT
afs-46512	231	5	454–9	454–9	NUM
afs-46512	231	6	.	.	PUNCT
afs-46512	232	1	doi:10.1111	doi:10.1111	ADJ
afs-46512	232	2	/	/	SYM
afs-46512	232	3	j.1365	j.1365	NOUN
afs-46512	232	4	-	-	PUNCT
afs-46512	232	5	2052.2010.02023.x	2052.2010.02023.x	NUM
afs-46512	232	6	mcnatty	mcnatty	NOUN
afs-46512	232	7	,	,	PUNCT
afs-46512	232	8	k.p	k.p	PROPN
afs-46512	232	9	.	.	PROPN
afs-46512	232	10	,	,	PUNCT
afs-46512	232	11	smith	smith	PROPN
afs-46512	232	12	,	,	PUNCT
afs-46512	232	13	p.	p.	PROPN
afs-46512	232	14	,	,	PUNCT
afs-46512	232	15	moore	moore	PROPN
afs-46512	232	16	,	,	PUNCT
afs-46512	232	17	l.g	l.g	PROPN
afs-46512	232	18	.	.	PROPN
afs-46512	232	19	,	,	PUNCT
afs-46512	232	20	reader	reader	PROPN
afs-46512	232	21	,	,	PUNCT
afs-46512	232	22	k.	k.	PROPN
afs-46512	232	23	,	,	PUNCT
afs-46512	232	24	lun	lun	PROPN
afs-46512	232	25	,	,	PUNCT
afs-46512	232	26	s.	s.	PROPN
afs-46512	232	27	,	,	PUNCT
afs-46512	232	28	hanrahan	hanrahan	PROPN
afs-46512	232	29	,	,	PUNCT
afs-46512	232	30	j.p	j.p	PROPN
afs-46512	232	31	.	.	PROPN
afs-46512	232	32	,	,	PUNCT
afs-46512	232	33	groome	groome	PROPN
afs-46512	232	34	,	,	PUNCT
afs-46512	232	35	n.p	n.p	PROPN
afs-46512	232	36	.	.	PROPN
afs-46512	232	37	,	,	PUNCT
afs-46512	232	38	laitinen	laitinen	PROPN
afs-46512	232	39	,	,	PUNCT
afs-46512	232	40	m.	m.	NOUN
afs-46512	232	41	,	,	PUNCT
afs-46512	232	42	ritvos	ritvos	ADV
afs-46512	232	43	,	,	PUNCT
afs-46512	232	44	o.	o.	PROPN
afs-46512	232	45	&	&	CCONJ
afs-46512	232	46	juengel	juengel	PROPN
afs-46512	232	47	,	,	PUNCT
afs-46512	232	48	j.l	j.l	PROPN
afs-46512	232	49	.	.	PROPN
afs-46512	232	50	2005	2005	NUM
afs-46512	232	51	.	.	PUNCT
afs-46512	233	1	oocyte	oocyte	NOUN
afs-46512	233	2	-	-	PUNCT
afs-46512	233	3	expressed	express	VERB
afs-46512	233	4	genes	gene	NOUN
afs-46512	233	5	affecting	affect	VERB
afs-46512	233	6	ovulation	ovulation	NOUN
afs-46512	233	7	rate	rate	NOUN
afs-46512	233	8	.	.	PUNCT
afs-46512	234	1	molecular	molecular	ADJ
afs-46512	234	2	and	and	CCONJ
afs-46512	234	3	cellular	cellular	ADJ
afs-46512	234	4	endocrinology	endocrinology	NOUN
afs-46512	234	5	234	234	NUM
afs-46512	234	6	:	:	PUNCT
afs-46512	234	7	57–66	57–66	NUM
afs-46512	234	8	.	.	PUNCT
afs-46512	235	1	doi:10.1016	doi:10.1016	PROPN
afs-46512	235	2	/	/	SYM
afs-46512	235	3	j.mce.2004.08.013	j.mce.2004.08.013	PROPN
afs-46512	235	4	mullen	mullen	PROPN
afs-46512	235	5	,	,	PUNCT
afs-46512	235	6	m.p	m.p	PROPN
afs-46512	235	7	.	.	PROPN
afs-46512	235	8	,	,	PUNCT
afs-46512	235	9	hanrahan	hanrahan	PROPN
afs-46512	235	10	,	,	PUNCT
afs-46512	235	11	j.p	j.p	PROPN
afs-46512	235	12	.	.	PROPN
afs-46512	235	13	,	,	PUNCT
afs-46512	235	14	howard	howard	PROPN
afs-46512	235	15	,	,	PUNCT
afs-46512	235	16	d.j	d.j	PROPN
afs-46512	235	17	.	.	PROPN
afs-46512	235	18	&	&	CCONJ
afs-46512	235	19	powell	powell	PROPN
afs-46512	235	20	,	,	PUNCT
afs-46512	235	21	r.	r.	PROPN
afs-46512	235	22	2013	2013	NUM
afs-46512	235	23	.	.	PUNCT
afs-46512	236	1	investigation	investigation	NOUN
afs-46512	236	2	of	of	ADP
afs-46512	236	3	prolific	prolific	ADJ
afs-46512	236	4	sheep	sheep	NOUN
afs-46512	236	5	from	from	ADP
afs-46512	236	6	uk	uk	PROPN
afs-46512	236	7	and	and	CCONJ
afs-46512	236	8	ireland	ireland	PROPN
afs-46512	236	9	for	for	ADP
afs-46512	236	10	evidence	evidence	NOUN
afs-46512	236	11	on	on	ADP
afs-46512	236	12	origin	origin	NOUN
afs-46512	236	13	of	of	ADP
afs-46512	236	14	the	the	DET
afs-46512	236	15	mutations	mutation	NOUN
afs-46512	236	16	in	in	ADP
afs-46512	236	17	bmp15	bmp15	PROPN
afs-46512	236	18	(	(	PUNCT
afs-46512	236	19	fecx(g	fecx(g	PROPN
afs-46512	236	20	)	)	PUNCT
afs-46512	236	21	,	,	PUNCT
afs-46512	236	22	fecx(b	fecx(b	PROPN
afs-46512	236	23	)	)	PUNCT
afs-46512	236	24	)	)	PUNCT
afs-46512	236	25	and	and	CCONJ
afs-46512	236	26	gdf9	gdf9	PROPN
afs-46512	236	27	(	(	PUNCT
afs-46512	236	28	fecg(h	fecg(h	NOUN
afs-46512	236	29	)	)	PUNCT
afs-46512	236	30	)	)	PUNCT
afs-46512	236	31	in	in	ADP
afs-46512	236	32	belclare	belclare	NOUN
afs-46512	236	33	and	and	CCONJ
afs-46512	236	34	cambridge	cambridge	NOUN
afs-46512	236	35	sheep	sheep	NOUN
afs-46512	236	36	.	.	PUNCT
afs-46512	237	1	plos	plos	PROPN
afs-46512	237	2	one	one	NUM
afs-46512	237	3	8	8	NUM
afs-46512	237	4	:	:	PUNCT
afs-46512	237	5	e53172	e53172	NOUN
afs-46512	237	6	.	.	PUNCT
afs-46512	237	7	doi:10.1371	doi:10.1371	PROPN
afs-46512	237	8	/	/	SYM
afs-46512	238	1	journal.pone.0053172	journal.pone.0053172	PROPN
afs-46512	238	2	notter	notter	NOUN
afs-46512	238	3	,	,	PUNCT
afs-46512	238	4	d.r	d.r	PROPN
afs-46512	238	5	.	.	PROPN
afs-46512	238	6	,	,	PUNCT
afs-46512	238	7	cockett	cockett	PROPN
afs-46512	238	8	,	,	PUNCT
afs-46512	238	9	n.e	n.e	PROPN
afs-46512	238	10	.	.	PROPN
afs-46512	238	11	&	&	CCONJ
afs-46512	238	12	hadfield	hadfield	PROPN
afs-46512	238	13	,	,	PUNCT
afs-46512	238	14	t.s	t.s	PROPN
afs-46512	238	15	.	.	PROPN
afs-46512	238	16	2003	2003	NUM
afs-46512	238	17	.	.	PUNCT
afs-46512	239	1	evaluation	evaluation	NOUN
afs-46512	239	2	of	of	ADP
afs-46512	239	3	melatonin	melatonin	NOUN
afs-46512	239	4	receptor	receptor	NOUN
afs-46512	239	5	1a	1a	NOUN
afs-46512	239	6	as	as	ADP
afs-46512	239	7	a	a	DET
afs-46512	239	8	candidate	candidate	NOUN
afs-46512	239	9	gene	gene	NOUN
afs-46512	239	10	influencing	influence	VERB
afs-46512	239	11	reproduction	reproduction	NOUN
afs-46512	239	12	in	in	ADP
afs-46512	239	13	an	an	DET
afs-46512	239	14	autumn	autumn	NOUN
afs-46512	239	15	-	-	PUNCT
afs-46512	239	16	lambing	lamb	VERB
afs-46512	239	17	sheep	sheep	NOUN
afs-46512	239	18	flock	flock	NOUN
afs-46512	239	19	.	.	PUNCT
afs-46512	240	1	journal	journal	NOUN
afs-46512	240	2	of	of	ADP
afs-46512	240	3	animal	animal	NOUN
afs-46512	240	4	science	science	NOUN
afs-46512	240	5	81	81	NUM
afs-46512	240	6	:	:	PUNCT
afs-46512	240	7	912–7	912–7	NOUN
afs-46512	240	8	.	.	PUNCT
afs-46512	241	1	retrieved	retrieve	VERB
afs-46512	241	2	from	from	ADP
afs-46512	241	3	http://www.ncbi.nlm.nih.gov/pubmed/12723079	http://www.ncbi.nlm.nih.gov/pubmed/12723079	NOUN
afs-46512	241	4	agricultural	agricultural	ADJ
afs-46512	241	5	and	and	CCONJ
afs-46512	241	6	food	food	NOUN
afs-46512	241	7	science	science	PROPN
afs-46512	241	8	k.	k.	PROPN
afs-46512	241	9	pokharel	pokharel	PROPN
afs-46512	241	10	et	et	PROPN
afs-46512	241	11	al	al	PROPN
afs-46512	241	12	.	.	PROPN
afs-46512	242	1	(	(	PUNCT
afs-46512	242	2	2015	2015	NUM
afs-46512	242	3	)	)	PUNCT
afs-46512	242	4	24	24	NUM
afs-46512	242	5	:	:	PUNCT
afs-46512	242	6	1–9	1–9	NUM
afs-46512	242	7	9	9	NUM
afs-46512	242	8	ramayo	ramayo	NOUN
afs-46512	242	9	-	-	PUNCT
afs-46512	242	10	caldas	caldas	PROPN
afs-46512	242	11	,	,	PUNCT
afs-46512	242	12	y.	y.	PROPN
afs-46512	242	13	,	,	PUNCT
afs-46512	242	14	mach	mach	NOUN
afs-46512	242	15	,	,	PUNCT
afs-46512	242	16	n.	n.	NOUN
afs-46512	242	17	,	,	PUNCT
afs-46512	242	18	esteve	esteve	PROPN
afs-46512	242	19	-	-	PUNCT
afs-46512	242	20	codina	codina	PROPN
afs-46512	242	21	,	,	PUNCT
afs-46512	242	22	a.	a.	PROPN
afs-46512	242	23	,	,	PUNCT
afs-46512	242	24	corominas	coromina	NOUN
afs-46512	242	25	,	,	PUNCT
afs-46512	242	26	j.	j.	PROPN
afs-46512	242	27	,	,	PUNCT
afs-46512	242	28	castelló	castelló	PROPN
afs-46512	242	29	,	,	PUNCT
afs-46512	242	30	a.	a.	NOUN
afs-46512	242	31	,	,	PUNCT
afs-46512	242	32	ballester	ballester	NOUN
afs-46512	242	33	,	,	PUNCT
afs-46512	242	34	m.	m.	NOUN
afs-46512	242	35	,	,	PUNCT
afs-46512	242	36	estelle	estelle	PROPN
afs-46512	242	37	,	,	PUNCT
afs-46512	242	38	j.	j.	PROPN
afs-46512	242	39	,	,	PUNCT
afs-46512	242	40	ibanez	ibanez	NOUN
afs-46512	242	41	-	-	PUNCT
afs-46512	242	42	escriche	escriche	NOUN
afs-46512	242	43	,	,	PUNCT
afs-46512	242	44	n.	n.	NOUN
afs-46512	242	45	,	,	PUNCT
afs-46512	242	46	fernandez	fernandez	PROPN
afs-46512	242	47	,	,	PUNCT
afs-46512	242	48	a.i	a.i	PROPN
afs-46512	242	49	.	.	PROPN
afs-46512	242	50	,	,	PUNCT
afs-46512	242	51	perez	perez	PROPN
afs-46512	242	52	-	-	PUNCT
afs-46512	242	53	enciso	enciso	PROPN
afs-46512	242	54	,	,	PUNCT
afs-46512	242	55	m.	m.	NOUN
afs-46512	242	56	&	&	CCONJ
afs-46512	242	57	folch	folch	PROPN
afs-46512	242	58	,	,	PUNCT
afs-46512	242	59	j.m	j.m	PROPN
afs-46512	242	60	.	.	PROPN
afs-46512	242	61	2012	2012	NUM
afs-46512	242	62	.	.	PUNCT
afs-46512	243	1	liver	liver	NOUN
afs-46512	243	2	transcriptome	transcriptome	ADJ
afs-46512	243	3	profile	profile	NOUN
afs-46512	243	4	in	in	ADP
afs-46512	243	5	pigs	pig	NOUN
afs-46512	243	6	with	with	ADP
afs-46512	243	7	extreme	extreme	ADJ
afs-46512	243	8	phenotypes	phenotype	NOUN
afs-46512	243	9	of	of	ADP
afs-46512	243	10	intramuscular	intramuscular	ADJ
afs-46512	243	11	fatty	fatty	NOUN
afs-46512	243	12	acid	acid	NOUN
afs-46512	243	13	composition	composition	NOUN
afs-46512	243	14	.	.	PUNCT
afs-46512	244	1	bmc	bmc	ADJ
afs-46512	244	2	genomics	genomic	NOUN
afs-46512	244	3	13	13	NUM
afs-46512	244	4	:	:	SYM
afs-46512	244	5	547	547	NUM
afs-46512	244	6	.	.	PUNCT
afs-46512	245	1	doi:10.1186/1471	doi:10.1186/1471	NOUN
afs-46512	245	2	-	-	PUNCT
afs-46512	245	3	2164	2164	NUM
afs-46512	245	4	-	-	SYM
afs-46512	245	5	13	13	NUM
afs-46512	245	6	-	-	PUNCT
afs-46512	245	7	547	547	NUM
afs-46512	245	8	sormunen	sormunen	NOUN
afs-46512	245	9	-	-	PUNCT
afs-46512	245	10	cristian	cristian	PROPN
afs-46512	245	11	,	,	PUNCT
afs-46512	245	12	r.	r.	PROPN
afs-46512	245	13	&	&	CCONJ
afs-46512	245	14	suvela	suvela	PROPN
afs-46512	245	15	,	,	PUNCT
afs-46512	245	16	m.	m.	NOUN
afs-46512	245	17	1999	1999	NUM
afs-46512	245	18	.	.	PUNCT
afs-46512	246	1	out	out	ADP
afs-46512	246	2	-	-	PUNCT
afs-46512	246	3	of	of	ADP
afs-46512	246	4	-	-	PUNCT
afs-46512	246	5	season	season	NOUN
afs-46512	246	6	lambing	lambing	NOUN
afs-46512	246	7	of	of	ADP
afs-46512	246	8	finnish	finnish	ADJ
afs-46512	246	9	landrace	landrace	ADJ
afs-46512	246	10	ewes	ewe	NOUN
afs-46512	246	11	.	.	PUNCT
afs-46512	247	1	small	small	ADJ
afs-46512	247	2	ruminant	ruminant	NOUN
afs-46512	247	3	research	research	NOUN
afs-46512	247	4	31	31	NUM
afs-46512	247	5	:	:	PUNCT
afs-46512	247	6	265	265	NUM
afs-46512	247	7	–	–	PUNCT
afs-46512	247	8	272	272	NUM
afs-46512	247	9	.	.	PUNCT
afs-46512	247	10	retrieved	retrieve	VERB
afs-46512	247	11	from	from	ADP
afs-46512	247	12	http://www.sciencedirect.com/science/article/pii/s0921448898001400	http://www.sciencedirect.com/science/article/pii/s0921448898001400	PROPN
afs-46512	247	13	thorvaldsdóttir	thorvaldsdóttir	PROPN
afs-46512	247	14	,	,	PUNCT
afs-46512	247	15	h.	h.	PROPN
afs-46512	247	16	,	,	PUNCT
afs-46512	247	17	robinson	robinson	PROPN
afs-46512	247	18	,	,	PUNCT
afs-46512	247	19	j.t	j.t	PROPN
afs-46512	247	20	.	.	PROPN
afs-46512	247	21	&	&	CCONJ
afs-46512	247	22	mesirov	mesirov	PROPN
afs-46512	247	23	,	,	PUNCT
afs-46512	247	24	j.p	j.p	PROPN
afs-46512	247	25	.	.	PROPN
afs-46512	247	26	2013	2013	NUM
afs-46512	247	27	.	.	PUNCT
afs-46512	248	1	integrative	integrative	ADJ
afs-46512	248	2	genomics	genomic	NOUN
afs-46512	248	3	viewer	viewer	NOUN
afs-46512	248	4	(	(	PUNCT
afs-46512	248	5	igv	igv	NOUN
afs-46512	248	6	):	):	PUNCT
afs-46512	248	7	high	high	ADJ
afs-46512	248	8	-	-	PUNCT
afs-46512	248	9	performance	performance	NOUN
afs-46512	248	10	genomics	genomic	NOUN
afs-46512	248	11	data	data	NOUN
afs-46512	248	12	visualization	visualization	NOUN
afs-46512	248	13	and	and	CCONJ
afs-46512	248	14	exploration	exploration	NOUN
afs-46512	248	15	.	.	PUNCT
afs-46512	249	1	briefings	briefing	NOUN
afs-46512	249	2	in	in	ADP
afs-46512	249	3	bioinformatics	bioinformatics	NOUN
afs-46512	249	4	14	14	NUM
afs-46512	249	5	:	:	PUNCT
afs-46512	249	6	178–192	178–192	NUM
afs-46512	249	7	.	.	PUNCT
afs-46512	249	8	doi:10.1093	doi:10.1093	NOUN
afs-46512	249	9	/	/	SYM
afs-46512	249	10	bib	bib	NOUN
afs-46512	249	11	/	/	SYM
afs-46512	249	12	bbs017	bbs017	NOUN
afs-46512	249	13	trapnell	trapnell	NOUN
afs-46512	249	14	,	,	PUNCT
afs-46512	249	15	c.	c.	PROPN
afs-46512	249	16	,	,	PUNCT
afs-46512	249	17	williams	williams	PROPN
afs-46512	249	18	,	,	PUNCT
afs-46512	249	19	b.a	b.a	PROPN
afs-46512	249	20	.	.	PROPN
afs-46512	249	21	,	,	PUNCT
afs-46512	249	22	pertea	pertea	NOUN
afs-46512	249	23	,	,	PUNCT
afs-46512	249	24	g.	g.	PROPN
afs-46512	249	25	,	,	PUNCT
afs-46512	249	26	mortazavi	mortazavi	NOUN
afs-46512	249	27	,	,	PUNCT
afs-46512	249	28	a.	a.	NOUN
afs-46512	249	29	,	,	PUNCT
afs-46512	249	30	kwan	kwan	PROPN
afs-46512	249	31	,	,	PUNCT
afs-46512	249	32	g.	g.	PROPN
afs-46512	249	33	,	,	PUNCT
afs-46512	249	34	van	van	PROPN
afs-46512	249	35	baren	baren	PROPN
afs-46512	249	36	,	,	PUNCT
afs-46512	249	37	m.j	m.j	PROPN
afs-46512	249	38	.	.	PROPN
afs-46512	249	39	,	,	PUNCT
afs-46512	249	40	salzberg	salzberg	PROPN
afs-46512	249	41	,	,	PUNCT
afs-46512	249	42	s.l	s.l	PROPN
afs-46512	249	43	.	.	PROPN
afs-46512	249	44	,	,	PUNCT
afs-46512	249	45	wold	wold	PROPN
afs-46512	249	46	,	,	PUNCT
afs-46512	249	47	b.j	b.j	PROPN
afs-46512	249	48	.	.	PROPN
afs-46512	249	49	&	&	CCONJ
afs-46512	249	50	pachter	pachter	PROPN
afs-46512	249	51	,	,	PUNCT
afs-46512	249	52	l.	l.	PROPN
afs-46512	249	53	2010	2010	NUM
afs-46512	249	54	.	.	PUNCT
afs-46512	250	1	transcript	transcript	NOUN
afs-46512	250	2	assembly	assembly	NOUN
afs-46512	250	3	and	and	CCONJ
afs-46512	250	4	quantification	quantification	NOUN
afs-46512	250	5	by	by	ADP
afs-46512	250	6	rna	rna	NOUN
afs-46512	250	7	-	-	PUNCT
afs-46512	250	8	seq	seq	NOUN
afs-46512	250	9	reveals	reveal	NOUN
afs-46512	250	10	unannotated	unannotate	VERB
afs-46512	250	11	transcripts	transcript	NOUN
afs-46512	250	12	and	and	CCONJ
afs-46512	250	13	isoform	isoform	NOUN
afs-46512	250	14	switching	switch	VERB
afs-46512	250	15	during	during	ADP
afs-46512	250	16	cell	cell	NOUN
afs-46512	250	17	differentiation	differentiation	NOUN
afs-46512	250	18	.	.	PUNCT
afs-46512	251	1	nature	nature	NOUN
afs-46512	251	2	biotechnology	biotechnology	NOUN
afs-46512	251	3	28	28	NUM
afs-46512	251	4	:	:	PUNCT
afs-46512	251	5	511–515	511–515	NUM
afs-46512	251	6	.	.	PUNCT
afs-46512	251	7	doi:10.1038	doi:10.1038	NOUN
afs-46512	251	8	/	/	SYM
afs-46512	251	9	nbt.1621	nbt.1621	PROPN
afs-46512	251	10	twine	twine	NOUN
afs-46512	251	11	,	,	PUNCT
afs-46512	251	12	n.a	n.a	PROPN
afs-46512	251	13	.	.	PROPN
afs-46512	251	14	,	,	PUNCT
afs-46512	251	15	janitz	janitz	PROPN
afs-46512	251	16	,	,	PUNCT
afs-46512	251	17	k.	k.	PROPN
afs-46512	251	18	,	,	PUNCT
afs-46512	251	19	wilkins	wilkins	PROPN
afs-46512	251	20	,	,	PUNCT
afs-46512	251	21	m.r	m.r	PROPN
afs-46512	251	22	.	.	PROPN
afs-46512	251	23	&	&	CCONJ
afs-46512	251	24	janitz	janitz	PROPN
afs-46512	251	25	,	,	PUNCT
afs-46512	251	26	m.	m.	NOUN
afs-46512	251	27	2011	2011	NUM
afs-46512	251	28	.	.	PUNCT
afs-46512	252	1	whole	whole	ADJ
afs-46512	252	2	transcriptome	transcriptome	ADJ
afs-46512	252	3	sequencing	sequencing	NOUN
afs-46512	252	4	reveals	reveal	VERB
afs-46512	252	5	gene	gene	NOUN
afs-46512	252	6	expression	expression	NOUN
afs-46512	252	7	and	and	CCONJ
afs-46512	252	8	splicing	splicing	NOUN
afs-46512	252	9	differences	difference	NOUN
afs-46512	252	10	in	in	ADP
afs-46512	252	11	brain	brain	NOUN
afs-46512	252	12	regions	region	NOUN
afs-46512	252	13	affected	affect	VERB
afs-46512	252	14	by	by	ADP
afs-46512	252	15	alzheimer	alzheimer	PROPN
afs-46512	252	16	’s	’s	PART
afs-46512	252	17	disease	disease	NOUN
afs-46512	252	18	.	.	PUNCT
afs-46512	253	1	plos	plos	PROPN
afs-46512	253	2	one	one	NUM
afs-46512	253	3	6	6	NUM
afs-46512	253	4	:	:	SYM
afs-46512	253	5	e16266	e16266	NOUN
afs-46512	253	6	.	.	PUNCT
afs-46512	253	7	doi:10.1371	doi:10.1371	PROPN
afs-46512	253	8	/	/	SYM
afs-46512	254	1	journal.pone.0016266	journal.pone.0016266	PROPN
afs-46512	254	2	vinet	vinet	PROPN
afs-46512	254	3	,	,	PUNCT
afs-46512	254	4	a.	a.	NOUN
afs-46512	254	5	,	,	PUNCT
afs-46512	254	6	drouilhet	drouilhet	NOUN
afs-46512	254	7	,	,	PUNCT
afs-46512	254	8	l.	l.	PROPN
afs-46512	254	9	,	,	PUNCT
afs-46512	254	10	bodin	bodin	PROPN
afs-46512	254	11	,	,	PUNCT
afs-46512	254	12	l.	l.	PROPN
afs-46512	254	13	,	,	PUNCT
afs-46512	254	14	mulsant	mulsant	PROPN
afs-46512	254	15	,	,	PUNCT
afs-46512	254	16	p.	p.	PROPN
afs-46512	254	17	,	,	PUNCT
afs-46512	254	18	fabre	fabre	PROPN
afs-46512	254	19	,	,	PUNCT
afs-46512	254	20	s.	s.	PROPN
afs-46512	254	21	&	&	CCONJ
afs-46512	254	22	phocas	phocas	PROPN
afs-46512	254	23	,	,	PUNCT
afs-46512	254	24	f.	f.	PROPN
afs-46512	254	25	2012	2012	NUM
afs-46512	254	26	.	.	PUNCT
afs-46512	255	1	genetic	genetic	ADJ
afs-46512	255	2	control	control	NOUN
afs-46512	255	3	of	of	ADP
afs-46512	255	4	multiple	multiple	ADJ
afs-46512	255	5	births	birth	NOUN
afs-46512	255	6	in	in	ADP
afs-46512	255	7	low	low	ADJ
afs-46512	255	8	ovulating	ovulate	VERB
afs-46512	255	9	mammalian	mammalian	ADJ
afs-46512	255	10	species	specie	NOUN
afs-46512	255	11	.	.	PUNCT
afs-46512	256	1	mammalian	mammalian	ADJ
afs-46512	256	2	genome	genome	NOUN
afs-46512	256	3	 	 	SPACE
afs-46512	256	4	:	:	PUNCT
afs-46512	256	5	official	official	ADJ
afs-46512	256	6	journal	journal	NOUN
afs-46512	256	7	of	of	ADP
afs-46512	256	8	the	the	DET
afs-46512	256	9	international	international	ADJ
afs-46512	256	10	mammalian	mammalian	ADJ
afs-46512	256	11	genome	genome	NOUN
afs-46512	256	12	society	society	NOUN
afs-46512	256	13	23	23	NUM
afs-46512	256	14	:	:	PUNCT
afs-46512	256	15	727–40	727–40	NUM
afs-46512	256	16	.	.	PUNCT
afs-46512	257	1	doi:10.1007/	doi:10.1007/	PROPN
afs-46512	257	2	s00335	s00335	PROPN
afs-46512	257	3	-	-	PUNCT
afs-46512	257	4	012	012	NUM
afs-46512	257	5	-	-	PUNCT
afs-46512	257	6	9412	9412	NUM
afs-46512	257	7	-	-	SYM
afs-46512	257	8	4	4	NUM
afs-46512	257	9	våge	våge	NOUN
afs-46512	257	10	,	,	PUNCT
afs-46512	257	11	d.i	d.i	PROPN
afs-46512	257	12	.	.	PROPN
afs-46512	257	13	,	,	PUNCT
afs-46512	257	14	husdal	husdal	NOUN
afs-46512	257	15	,	,	PUNCT
afs-46512	257	16	m.	m.	NOUN
afs-46512	257	17	,	,	PUNCT
afs-46512	257	18	kent	kent	PROPN
afs-46512	257	19	,	,	PUNCT
afs-46512	257	20	m.p	m.p	PROPN
afs-46512	257	21	.	.	PROPN
afs-46512	257	22	,	,	PUNCT
afs-46512	257	23	klemetsdal	klemetsdal	PROPN
afs-46512	257	24	,	,	PUNCT
afs-46512	257	25	g.	g.	PROPN
afs-46512	257	26	&	&	CCONJ
afs-46512	257	27	boman	boman	PROPN
afs-46512	257	28	,	,	PUNCT
afs-46512	257	29	i.a	i.a	PROPN
afs-46512	257	30	.	.	PROPN
afs-46512	257	31	2013	2013	NUM
afs-46512	257	32	.	.	PUNCT
afs-46512	258	1	a	a	DET
afs-46512	258	2	missense	missense	NOUN
afs-46512	258	3	mutation	mutation	NOUN
afs-46512	258	4	in	in	ADP
afs-46512	258	5	growth	growth	NOUN
afs-46512	258	6	differentiation	differentiation	NOUN
afs-46512	258	7	factor	factor	NOUN
afs-46512	258	8	9	9	NUM
afs-46512	258	9	(	(	PUNCT
afs-46512	258	10	gdf9	gdf9	PROPN
afs-46512	258	11	)	)	PUNCT
afs-46512	258	12	is	be	AUX
afs-46512	258	13	strongly	strongly	ADV
afs-46512	258	14	associated	associate	VERB
afs-46512	258	15	with	with	ADP
afs-46512	258	16	litter	litter	NOUN
afs-46512	258	17	size	size	NOUN
afs-46512	258	18	in	in	ADP
afs-46512	258	19	sheep	sheep	NOUN
afs-46512	258	20	.	.	PUNCT
afs-46512	259	1	bmc	bmc	ADJ
afs-46512	259	2	genetics	genetic	NOUN
afs-46512	259	3	14	14	NUM
afs-46512	259	4	:	:	SYM
afs-46512	259	5	1	1	NUM
afs-46512	259	6	.	.	X
afs-46512	259	7	doi:10.1186/1471	doi:10.1186/1471	NOUN
afs-46512	259	8	-	-	PUNCT
afs-46512	259	9	2156	2156	NUM
afs-46512	259	10	-	-	SYM
afs-46512	259	11	14	14	NUM
afs-46512	259	12	-	-	SYM
afs-46512	259	13	1	1	NUM
afs-46512	259	14	xu	xu	PROPN
afs-46512	259	15	,	,	PUNCT
afs-46512	259	16	q.	q.	PROPN
afs-46512	259	17	,	,	PUNCT
afs-46512	259	18	zhao	zhao	PROPN
afs-46512	259	19	,	,	PUNCT
afs-46512	259	20	w.	w.	PROPN
afs-46512	259	21	,	,	PUNCT
afs-46512	259	22	chen	chen	PROPN
afs-46512	259	23	,	,	PUNCT
afs-46512	259	24	y.	y.	PROPN
afs-46512	259	25	,	,	PUNCT
afs-46512	259	26	tong	tong	PROPN
afs-46512	259	27	,	,	PUNCT
afs-46512	259	28	y.	y.	PROPN
afs-46512	259	29	,	,	PUNCT
afs-46512	259	30	rong	rong	PROPN
afs-46512	259	31	,	,	PUNCT
afs-46512	259	32	g.	g.	PROPN
afs-46512	259	33	,	,	PUNCT
afs-46512	259	34	huang	huang	PROPN
afs-46512	259	35	,	,	PUNCT
afs-46512	259	36	z.	z.	PROPN
afs-46512	259	37	,	,	PUNCT
afs-46512	259	38	zhang	zhang	PROPN
afs-46512	259	39	,	,	PUNCT
afs-46512	259	40	y.	y.	PROPN
afs-46512	259	41	,	,	PUNCT
afs-46512	259	42	chang	chang	PROPN
afs-46512	259	43	,	,	PUNCT
afs-46512	259	44	g.	g.	PROPN
afs-46512	259	45	,	,	PUNCT
afs-46512	259	46	wu	wu	PROPN
afs-46512	259	47	,	,	PUNCT
afs-46512	259	48	x.	x.	PROPN
afs-46512	259	49	&	&	CCONJ
afs-46512	259	50	chen	chen	PROPN
afs-46512	259	51	,	,	PUNCT
afs-46512	259	52	g.	g.	PROPN
afs-46512	259	53	2013	2013	NUM
afs-46512	259	54	.	.	PUNCT
afs-46512	260	1	transcriptome	transcriptome	ADJ
afs-46512	260	2	profiling	profiling	NOUN
afs-46512	260	3	of	of	ADP
afs-46512	260	4	the	the	DET
afs-46512	260	5	goose	goose	NOUN
afs-46512	260	6	(	(	PUNCT
afs-46512	260	7	anser	anser	NOUN
afs-46512	260	8	cygnoides	cygnoide	NOUN
afs-46512	260	9	)	)	PUNCT
afs-46512	260	10	ovaries	ovary	NOUN
afs-46512	260	11	identify	identify	VERB
afs-46512	260	12	laying	lay	VERB
afs-46512	260	13	and	and	CCONJ
afs-46512	260	14	broodiness	broodiness	NOUN
afs-46512	260	15	phenotypes	phenotype	NOUN
afs-46512	260	16	.	.	PUNCT
afs-46512	261	1	plos	plos	PROPN
afs-46512	261	2	one	one	NUM
afs-46512	261	3	8	8	NUM
afs-46512	261	4	:	:	PUNCT
afs-46512	261	5	e55496	e55496	NOUN
afs-46512	261	6	.	.	NOUN
afs-46512	261	7	doi:10.1371	doi:10.1371	PROPN
afs-46512	261	8	/	/	SYM
afs-46512	261	9	journal.pone.0055496	journal.pone.0055496	PROPN