id	sid	tid	token	lemma	pos
bracis-28399	1	1	physicochemical	physicochemical	ADJ
bracis-28399	1	2	properties	property	NOUN
bracis-28399	1	3	for	for	ADP
bracis-28399	1	4	 	 	SPACE
bracis-28399	1	5	promoter	promoter	NOUN
bracis-28399	1	6	classification	classification	NOUN
bracis-28399	1	7	|	|	NOUN
bracis-28399	1	8	springer	springer	NOUN
bracis-28399	1	9	nature	nature	PROPN
bracis-28399	1	10	link	link	PROPN
bracis-28399	1	11	(	(	PUNCT
bracis-28399	1	12	formerly	formerly	ADV
bracis-28399	1	13	springerlink	springerlink	NOUN
bracis-28399	1	14	)	)	PUNCT
bracis-28399	1	15	skip	skip	VERB
bracis-28399	1	16	to	to	ADP
bracis-28399	1	17	main	main	ADJ
bracis-28399	1	18	content	content	NOUN
bracis-28399	1	19	advertisement	advertisement	NOUN
bracis-28399	1	20	log	log	NOUN
bracis-28399	1	21	in	in	ADP
bracis-28399	1	22	menu	menu	NOUN
bracis-28399	1	23	find	find	VERB
bracis-28399	1	24	a	a	DET
bracis-28399	1	25	journal	journal	NOUN
bracis-28399	1	26	publish	publish	VERB
bracis-28399	1	27	with	with	ADP
bracis-28399	1	28	us	we	PRON
bracis-28399	1	29	track	track	VERB
bracis-28399	1	30	your	your	PRON
bracis-28399	1	31	research	research	NOUN
bracis-28399	1	32	search	search	NOUN
bracis-28399	1	33	cart	cart	NOUN
bracis-28399	1	34	home	home	NOUN
bracis-28399	1	35	intelligent	intelligent	ADJ
bracis-28399	1	36	systems	system	NOUN
bracis-28399	1	37	conference	conference	NOUN
bracis-28399	1	38	paper	paper	NOUN
bracis-28399	1	39	physicochemical	physicochemical	ADJ
bracis-28399	1	40	properties	property	NOUN
bracis-28399	1	41	for	for	ADP
bracis-28399	1	42	 	 	SPACE
bracis-28399	1	43	promoter	promoter	NOUN
bracis-28399	1	44	classification	classification	NOUN
bracis-28399	1	45	conference	conference	NOUN
bracis-28399	1	46	paper	paper	NOUN
bracis-28399	1	47	first	first	ADV
bracis-28399	1	48	online	online	ADV
bracis-28399	1	49	:	:	PUNCT
bracis-28399	1	50	12	12	NUM
bracis-28399	1	51	october	october	NOUN
bracis-28399	1	52	2023	2023	NUM
bracis-28399	1	53	pp	pp	NOUN
bracis-28399	1	54	368–382	368–382	NUM
bracis-28399	1	55	cite	cite	VERB
bracis-28399	1	56	this	this	DET
bracis-28399	1	57	conference	conference	NOUN
bracis-28399	1	58	paper	paper	NOUN
bracis-28399	1	59	access	access	NOUN
bracis-28399	1	60	provided	provide	VERB
bracis-28399	1	61	by	by	ADP
bracis-28399	1	62	university	university	PROPN
bracis-28399	1	63	of	of	ADP
bracis-28399	1	64	notre	notre	PROPN
bracis-28399	1	65	dame	dame	PROPN
bracis-28399	1	66	hesburgh	hesburgh	PROPN
bracis-28399	1	67	library	library	PROPN
bracis-28399	1	68	download	download	PROPN
bracis-28399	1	69	book	book	NOUN
bracis-28399	1	70	pdf	pdf	PROPN
bracis-28399	1	71	download	download	NOUN
bracis-28399	1	72	book	book	NOUN
bracis-28399	1	73	epub	epub	PROPN
bracis-28399	1	74	intelligent	intelligent	ADJ
bracis-28399	1	75	systems	system	NOUN
bracis-28399	1	76	(	(	PUNCT
bracis-28399	1	77	bracis	bracis	NOUN
bracis-28399	1	78	2023	2023	NUM
bracis-28399	1	79	)	)	PUNCT
bracis-28399	1	80	physicochemical	physicochemical	ADJ
bracis-28399	1	81	properties	property	NOUN
bracis-28399	1	82	for	for	ADP
bracis-28399	1	83	 	 	SPACE
bracis-28399	1	84	promoter	promoter	NOUN
bracis-28399	1	85	classification	classification	NOUN
bracis-28399	1	86	download	download	NOUN
bracis-28399	1	87	book	book	NOUN
bracis-28399	1	88	pdf	pdf	PROPN
bracis-28399	1	89	download	download	NOUN
bracis-28399	1	90	book	book	PROPN
bracis-28399	1	91	epub	epub	PROPN
bracis-28399	1	92	lauro	lauro	PROPN
bracis-28399	1	93	moraes	moraes	PROPN
bracis-28399	1	94	  	  	SPACE
bracis-28399	1	95	orcid	orcid	NOUN
bracis-28399	1	96	:	:	PUNCT
bracis-28399	1	97	orcid.org/0000-0002-3688-31629	orcid.org/0000-0002-3688-31629	NOUN
bracis-28399	1	98	,	,	PUNCT
bracis-28399	1	99	eduardo	eduardo	PROPN
bracis-28399	1	100	luz	luz	PROPN
bracis-28399	1	101	  	  	SPACE
bracis-28399	1	102	orcid	orcid	NOUN
bracis-28399	1	103	:	:	PUNCT
bracis-28399	1	104	orcid.org/0000-0001-5249-15599	orcid.org/0000-0001-5249-15599	PROPN
bracis-28399	1	105	&	&	CCONJ
bracis-28399	1	106	gladston	gladston	PROPN
bracis-28399	1	107	moreira	moreira	PROPN
bracis-28399	1	108	  	  	SPACE
bracis-28399	1	109	orcid	orcid	NOUN
bracis-28399	1	110	:	:	PUNCT
bracis-28399	1	111	orcid.org/0000-0001-7747-59269	orcid.org/0000-0001-7747-59269	NOUN
bracis-28399	1	112	  	  	SPACE
bracis-28399	1	113	part	part	NOUN
bracis-28399	1	114	of	of	ADP
bracis-28399	1	115	the	the	DET
bracis-28399	1	116	book	book	NOUN
bracis-28399	1	117	series	series	NOUN
bracis-28399	1	118	:	:	PUNCT
bracis-28399	1	119	lecture	lecture	NOUN
bracis-28399	1	120	notes	note	NOUN
bracis-28399	1	121	in	in	ADP
bracis-28399	1	122	computer	computer	NOUN
bracis-28399	1	123	science	science	NOUN
bracis-28399	1	124	(	(	PUNCT
bracis-28399	1	125	(	(	PUNCT
bracis-28399	1	126	lnai	lnai	ADJ
bracis-28399	1	127	,	,	PUNCT
bracis-28399	1	128	volume	volume	NOUN
bracis-28399	1	129	14196	14196	NUM
bracis-28399	1	130	)	)	PUNCT
bracis-28399	1	131	)	)	PUNCT
bracis-28399	1	132	included	include	VERB
bracis-28399	1	133	in	in	ADP
bracis-28399	1	134	the	the	DET
bracis-28399	1	135	following	follow	VERB
bracis-28399	1	136	conference	conference	NOUN
bracis-28399	1	137	series	series	NOUN
bracis-28399	1	138	:	:	PUNCT
bracis-28399	1	139	brazilian	brazilian	ADJ
bracis-28399	1	140	conference	conference	NOUN
bracis-28399	1	141	on	on	ADP
bracis-28399	1	142	intelligent	intelligent	ADJ
bracis-28399	1	143	systems	system	NOUN
bracis-28399	1	144	523	523	NUM
bracis-28399	1	145	accesses	access	NOUN
bracis-28399	1	146	abstract	abstract	ADV
bracis-28399	1	147	the	the	DET
bracis-28399	1	148	accurate	accurate	ADJ
bracis-28399	1	149	identification	identification	NOUN
bracis-28399	1	150	of	of	ADP
bracis-28399	1	151	promoter	promoter	NOUN
bracis-28399	1	152	regions	region	NOUN
bracis-28399	1	153	in	in	ADP
bracis-28399	1	154	dna	dna	PROPN
bracis-28399	1	155	sequences	sequence	NOUN
bracis-28399	1	156	holds	hold	VERB
bracis-28399	1	157	significant	significant	ADJ
bracis-28399	1	158	importance	importance	NOUN
bracis-28399	1	159	in	in	ADP
bracis-28399	1	160	the	the	DET
bracis-28399	1	161	field	field	NOUN
bracis-28399	1	162	of	of	ADP
bracis-28399	1	163	bioinformatics	bioinformatics	NOUN
bracis-28399	1	164	.	.	PUNCT
bracis-28399	2	1	while	while	SCONJ
bracis-28399	2	2	this	this	DET
bracis-28399	2	3	problem	problem	NOUN
bracis-28399	2	4	has	have	AUX
bracis-28399	2	5	garnered	garner	VERB
bracis-28399	2	6	substantial	substantial	ADJ
bracis-28399	2	7	attention	attention	NOUN
bracis-28399	2	8	in	in	ADP
bracis-28399	2	9	the	the	DET
bracis-28399	2	10	literature	literature	NOUN
bracis-28399	2	11	,	,	PUNCT
bracis-28399	2	12	it	it	PRON
bracis-28399	2	13	remains	remain	VERB
bracis-28399	2	14	unresolved	unresolved	ADJ
bracis-28399	2	15	.	.	PUNCT
bracis-28399	3	1	several	several	ADJ
bracis-28399	3	2	researchers	researcher	NOUN
bracis-28399	3	3	have	have	AUX
bracis-28399	3	4	achieved	achieve	VERB
bracis-28399	3	5	notable	notable	ADJ
bracis-28399	3	6	outcomes	outcome	NOUN
bracis-28399	3	7	by	by	ADP
bracis-28399	3	8	employing	employ	VERB
bracis-28399	3	9	diverse	diverse	ADJ
bracis-28399	3	10	machine	machine	NOUN
bracis-28399	3	11	-	-	PUNCT
bracis-28399	3	12	learning	learn	VERB
bracis-28399	3	13	techniques	technique	NOUN
bracis-28399	3	14	to	to	PART
bracis-28399	3	15	predict	predict	VERB
bracis-28399	3	16	promoter	promoter	NOUN
bracis-28399	3	17	regions	region	NOUN
bracis-28399	3	18	.	.	PUNCT
bracis-28399	4	1	however	however	ADV
bracis-28399	4	2	,	,	PUNCT
bracis-28399	4	3	only	only	ADV
bracis-28399	4	4	a	a	DET
bracis-28399	4	5	few	few	ADJ
bracis-28399	4	6	have	have	AUX
bracis-28399	4	7	thoroughly	thoroughly	ADV
bracis-28399	4	8	explored	explore	VERB
bracis-28399	4	9	the	the	DET
bracis-28399	4	10	utilization	utilization	NOUN
bracis-28399	4	11	of	of	ADP
bracis-28399	4	12	features	feature	NOUN
bracis-28399	4	13	derived	derive	VERB
bracis-28399	4	14	from	from	ADP
bracis-28399	4	15	the	the	DET
bracis-28399	4	16	physicochemical	physicochemical	ADJ
bracis-28399	4	17	properties	property	NOUN
bracis-28399	4	18	of	of	ADP
bracis-28399	4	19	dna	dna	PROPN
bracis-28399	4	20	across	across	ADP
bracis-28399	4	21	various	various	ADJ
bracis-28399	4	22	organism	organism	NOUN
bracis-28399	4	23	types	type	NOUN
bracis-28399	4	24	.	.	PUNCT
bracis-28399	5	1	this	this	DET
bracis-28399	5	2	study	study	NOUN
bracis-28399	5	3	investigates	investigate	VERB
bracis-28399	5	4	the	the	DET
bracis-28399	5	5	advantages	advantage	NOUN
bracis-28399	5	6	of	of	ADP
bracis-28399	5	7	incorporating	incorporate	VERB
bracis-28399	5	8	these	these	DET
bracis-28399	5	9	features	feature	NOUN
bracis-28399	5	10	in	in	ADP
bracis-28399	5	11	the	the	DET
bracis-28399	5	12	training	training	NOUN
bracis-28399	5	13	of	of	ADP
bracis-28399	5	14	machine	machine	NOUN
bracis-28399	5	15	-	-	PUNCT
bracis-28399	5	16	learning	learn	VERB
bracis-28399	5	17	models	model	NOUN
bracis-28399	5	18	.	.	PUNCT
bracis-28399	6	1	the	the	DET
bracis-28399	6	2	research	research	NOUN
bracis-28399	6	3	evaluates	evaluate	NOUN
bracis-28399	6	4	and	and	CCONJ
bracis-28399	6	5	compares	compare	VERB
bracis-28399	6	6	the	the	DET
bracis-28399	6	7	performance	performance	NOUN
bracis-28399	6	8	of	of	ADP
bracis-28399	6	9	multiple	multiple	ADJ
bracis-28399	6	10	metrics	metric	NOUN
bracis-28399	6	11	on	on	ADP
bracis-28399	6	12	diverse	diverse	ADJ
bracis-28399	6	13	datasets	dataset	NOUN
bracis-28399	6	14	encompassing	encompass	VERB
bracis-28399	6	15	both	both	CCONJ
bracis-28399	6	16	prokaryotic	prokaryotic	ADJ
bracis-28399	6	17	and	and	CCONJ
bracis-28399	6	18	eukaryotic	eukaryotic	ADJ
bracis-28399	6	19	organisms	organism	NOUN
bracis-28399	6	20	.	.	PUNCT
bracis-28399	7	1	the	the	DET
bracis-28399	7	2	state	state	NOUN
bracis-28399	7	3	-	-	PUNCT
bracis-28399	7	4	of	of	ADP
bracis-28399	7	5	-	-	PUNCT
bracis-28399	7	6	the	the	DET
bracis-28399	7	7	-	-	PUNCT
bracis-28399	7	8	art	art	NOUN
bracis-28399	7	9	cnnprom	cnnprom	NOUN
bracis-28399	7	10	method	method	NOUN
bracis-28399	7	11	is	be	AUX
bracis-28399	7	12	employed	employ	VERB
bracis-28399	7	13	as	as	ADP
bracis-28399	7	14	the	the	DET
bracis-28399	7	15	baseline	baseline	NOUN
bracis-28399	7	16	for	for	ADP
bracis-28399	7	17	our	our	PRON
bracis-28399	7	18	experiments	experiment	NOUN
bracis-28399	7	19	.	.	PUNCT
bracis-28399	8	1	the	the	DET
bracis-28399	8	2	models	model	NOUN
bracis-28399	8	3	and	and	CCONJ
bracis-28399	8	4	source	source	NOUN
bracis-28399	8	5	code	code	NOUN
bracis-28399	8	6	associated	associate	VERB
bracis-28399	8	7	with	with	ADP
bracis-28399	8	8	this	this	DET
bracis-28399	8	9	study	study	NOUN
bracis-28399	8	10	can	can	AUX
bracis-28399	8	11	be	be	AUX
bracis-28399	8	12	accessed	access	VERB
bracis-28399	8	13	at	at	ADP
bracis-28399	8	14	the	the	DET
bracis-28399	8	15	following	follow	VERB
bracis-28399	8	16	url	url	NOUN
bracis-28399	8	17	of	of	ADP
bracis-28399	8	18	the	the	DET
bracis-28399	8	19	project	project	NOUN
bracis-28399	8	20	’s	’s	PART
bracis-28399	8	21	repository	repository	NOUN
bracis-28399	8	22	:	:	PUNCT
bracis-28399	8	23	https://anonymous.4open.science/r/bracis-paper-1458/.	https://anonymous.4open.science/r/bracis-paper-1458/.	VERB
bracis-28399	8	24	access	access	NOUN
bracis-28399	8	25	provided	provide	VERB
bracis-28399	8	26	by	by	ADP
bracis-28399	8	27	university	university	PROPN
bracis-28399	8	28	of	of	ADP
bracis-28399	8	29	notre	notre	PROPN
bracis-28399	8	30	dame	dame	PROPN
bracis-28399	8	31	hesburgh	hesburgh	PROPN
bracis-28399	8	32	library	library	PROPN
bracis-28399	8	33	.	.	PUNCT
bracis-28399	9	1	download	download	PROPN
bracis-28399	9	2	conference	conference	NOUN
bracis-28399	9	3	paper	paper	NOUN
bracis-28399	9	4	pdf	pdf	NOUN
bracis-28399	9	5	similar	similar	ADJ
bracis-28399	9	6	content	content	NOUN
bracis-28399	9	7	being	be	AUX
bracis-28399	9	8	viewed	view	VERB
bracis-28399	9	9	by	by	ADP
bracis-28399	9	10	others	other	NOUN
bracis-28399	9	11	explainable	explainable	ADJ
bracis-28399	9	12	artificial	artificial	ADJ
bracis-28399	9	13	intelligence	intelligence	NOUN
bracis-28399	9	14	as	as	ADP
bracis-28399	9	15	a	a	DET
bracis-28399	9	16	reliable	reliable	ADJ
bracis-28399	9	17	annotator	annotator	NOUN
bracis-28399	9	18	of	of	ADP
bracis-28399	9	19	archaeal	archaeal	ADJ
bracis-28399	9	20	promoter	promoter	NOUN
bracis-28399	9	21	regions	region	NOUN
bracis-28399	9	22	article	article	NOUN
bracis-28399	9	23	open	open	ADJ
bracis-28399	9	24	access	access	NOUN
bracis-28399	9	25	31	31	NUM
bracis-28399	9	26	january	january	PROPN
bracis-28399	9	27	2023	2023	NUM
bracis-28399	9	28	machine	machine	NOUN
bracis-28399	9	29	learning	learning	NOUN
bracis-28399	9	30	in	in	ADP
bracis-28399	9	31	bioinformatics	bioinformatics	NOUN
bracis-28399	9	32	:	:	PUNCT
bracis-28399	9	33	new	new	ADJ
bracis-28399	9	34	technique	technique	NOUN
bracis-28399	9	35	for	for	ADP
bracis-28399	9	36	dna	dna	NOUN
bracis-28399	9	37	sequencing	sequence	VERB
bracis-28399	9	38	classification	classification	NOUN
bracis-28399	9	39	chapter	chapter	NOUN
bracis-28399	9	40	©	©	PROPN
bracis-28399	9	41	2022	2022	NUM
bracis-28399	9	42	epdrna	epdrna	NOUN
bracis-28399	9	43	:	:	PUNCT
bracis-28399	9	44	a	a	DET
bracis-28399	9	45	model	model	NOUN
bracis-28399	9	46	for	for	ADP
bracis-28399	9	47	identifying	identify	VERB
bracis-28399	9	48	dna	dna	PROPN
bracis-28399	9	49	–	–	PUNCT
bracis-28399	9	50	rna	rna	NOUN
bracis-28399	9	51	binding	bind	VERB
bracis-28399	9	52	sites	site	NOUN
bracis-28399	9	53	in	in	ADP
bracis-28399	9	54	disease	disease	NOUN
bracis-28399	9	55	-	-	PUNCT
bracis-28399	9	56	related	relate	VERB
bracis-28399	9	57	proteins	protein	NOUN
bracis-28399	9	58	article	article	NOUN
bracis-28399	9	59	16	16	NUM
bracis-28399	9	60	march	march	PROPN
bracis-28399	9	61	2024	2024	NUM
bracis-28399	9	62	explore	explore	VERB
bracis-28399	9	63	related	relate	VERB
bracis-28399	9	64	subjects	subject	NOUN
bracis-28399	9	65	discover	discover	VERB
bracis-28399	9	66	the	the	DET
bracis-28399	9	67	latest	late	ADJ
bracis-28399	9	68	articles	article	NOUN
bracis-28399	9	69	,	,	PUNCT
bracis-28399	9	70	books	book	NOUN
bracis-28399	9	71	and	and	CCONJ
bracis-28399	9	72	news	news	NOUN
bracis-28399	9	73	in	in	ADP
bracis-28399	9	74	related	related	ADJ
bracis-28399	9	75	subjects	subject	NOUN
bracis-28399	9	76	,	,	PUNCT
bracis-28399	9	77	suggested	suggest	VERB
bracis-28399	9	78	using	use	VERB
bracis-28399	9	79	machine	machine	NOUN
bracis-28399	9	80	learning	learning	NOUN
bracis-28399	9	81	.	.	PUNCT
bracis-28399	10	1	biophysical	biophysical	ADJ
bracis-28399	10	2	chemistry	chemistry	NOUN
bracis-28399	10	3	categorization	categorization	NOUN
bracis-28399	10	4	machine	machine	NOUN
bracis-28399	10	5	learning	learn	VERB
bracis-28399	10	6	nucleic	nucleic	ADJ
bracis-28399	10	7	acid	acid	NOUN
bracis-28399	10	8	structure	structure	NOUN
bracis-28399	10	9	prediction	prediction	NOUN
bracis-28399	10	10	bioinformatics	bioinformatics	NOUN
bracis-28399	10	11	1	1	NUM
bracis-28399	10	12	introduction	introduction	NOUN
bracis-28399	10	13	the	the	DET
bracis-28399	10	14	identification	identification	NOUN
bracis-28399	10	15	of	of	ADP
bracis-28399	10	16	gene	gene	NOUN
bracis-28399	10	17	products	product	NOUN
bracis-28399	10	18	and	and	CCONJ
bracis-28399	10	19	their	their	PRON
bracis-28399	10	20	location	location	NOUN
bracis-28399	10	21	within	within	ADP
bracis-28399	10	22	dna	dna	PROPN
bracis-28399	10	23	sequences	sequence	NOUN
bracis-28399	10	24	that	that	PRON
bracis-28399	10	25	have	have	AUX
bracis-28399	10	26	not	not	PART
bracis-28399	10	27	been	be	AUX
bracis-28399	10	28	experimentally	experimentally	ADV
bracis-28399	10	29	characterized	characterize	VERB
bracis-28399	10	30	,	,	PUNCT
bracis-28399	10	31	commonly	commonly	ADV
bracis-28399	10	32	known	know	VERB
bracis-28399	10	33	as	as	ADP
bracis-28399	10	34	gene	gene	NOUN
bracis-28399	10	35	finding	finding	NOUN
bracis-28399	10	36	,	,	PUNCT
bracis-28399	10	37	is	be	AUX
bracis-28399	10	38	a	a	DET
bracis-28399	10	39	central	central	ADJ
bracis-28399	10	40	topic	topic	NOUN
bracis-28399	10	41	of	of	ADP
bracis-28399	10	42	interest	interest	NOUN
bracis-28399	10	43	in	in	ADP
bracis-28399	10	44	computational	computational	ADJ
bracis-28399	10	45	biology	biology	NOUN
bracis-28399	10	46	.	.	PUNCT
bracis-28399	11	1	prediction	prediction	NOUN
bracis-28399	11	2	of	of	ADP
bracis-28399	11	3	promoter	promoter	NOUN
bracis-28399	11	4	sequences	sequence	NOUN
bracis-28399	11	5	and	and	CCONJ
bracis-28399	11	6	transcriptional	transcriptional	ADJ
bracis-28399	11	7	start	start	NOUN
bracis-28399	11	8	points	point	NOUN
bracis-28399	11	9	can	can	AUX
bracis-28399	11	10	help	help	AUX
bracis-28399	11	11	signal	signal	VERB
bracis-28399	11	12	a	a	DET
bracis-28399	11	13	transcript	transcript	NOUN
bracis-28399	11	14	’s	’s	PART
bracis-28399	11	15	approximate	approximate	ADJ
bracis-28399	11	16	start	start	NOUN
bracis-28399	11	17	,	,	PUNCT
bracis-28399	11	18	thereby	thereby	ADV
bracis-28399	11	19	identifying	identify	VERB
bracis-28399	11	20	one	one	NUM
bracis-28399	11	21	end	end	NOUN
bracis-28399	11	22	of	of	ADP
bracis-28399	11	23	a	a	DET
bracis-28399	11	24	gene	gene	NOUN
bracis-28399	11	25	.	.	PUNCT
bracis-28399	12	1	this	this	DET
bracis-28399	12	2	information	information	NOUN
bracis-28399	12	3	is	be	AUX
bracis-28399	12	4	particularly	particularly	ADV
bracis-28399	12	5	useful	useful	ADJ
bracis-28399	12	6	in	in	ADP
bracis-28399	12	7	dna	dna	PROPN
bracis-28399	12	8	sequences	sequence	NOUN
bracis-28399	12	9	derived	derive	VERB
bracis-28399	12	10	from	from	ADP
bracis-28399	12	11	higher	high	ADJ
bracis-28399	12	12	eukaryotes	eukaryote	NOUN
bracis-28399	12	13	,	,	PUNCT
bracis-28399	12	14	where	where	SCONJ
bracis-28399	12	15	coding	code	VERB
bracis-28399	12	16	regions	region	NOUN
bracis-28399	12	17	are	be	AUX
bracis-28399	12	18	isolated	isolate	VERB
bracis-28399	12	19	segments	segment	NOUN
bracis-28399	12	20	embedded	embed	VERB
bracis-28399	12	21	within	within	ADP
bracis-28399	12	22	a	a	DET
bracis-28399	12	23	non	non	ADJ
bracis-28399	12	24	-	-	ADJ
bracis-28399	12	25	coding	coding	ADJ
bracis-28399	12	26	dna	dna	PROPN
bracis-28399	12	27	background	background	NOUN
bracis-28399	12	28	 	 	SPACE
bracis-28399	13	1	[	[	X
bracis-28399	13	2	28	28	NUM
bracis-28399	13	3	]	]	PUNCT
bracis-28399	13	4	.	.	PUNCT
bracis-28399	14	1	a	a	DET
bracis-28399	14	2	promoter	promoter	NOUN
bracis-28399	14	3	region	region	NOUN
bracis-28399	14	4	in	in	ADP
bracis-28399	14	5	dna	dna	PROPN
bracis-28399	14	6	is	be	AUX
bracis-28399	14	7	a	a	DET
bracis-28399	14	8	noncoding	noncoding	ADJ
bracis-28399	14	9	sequence	sequence	NOUN
bracis-28399	14	10	of	of	ADP
bracis-28399	14	11	dna	dna	PROPN
bracis-28399	14	12	located	locate	VERB
bracis-28399	14	13	upstream	upstream	NOUN
bracis-28399	14	14	of	of	ADP
bracis-28399	14	15	a	a	DET
bracis-28399	14	16	gene	gene	NOUN
bracis-28399	14	17	that	that	PRON
bracis-28399	14	18	is	be	AUX
bracis-28399	14	19	responsible	responsible	ADJ
bracis-28399	14	20	for	for	ADP
bracis-28399	14	21	regulating	regulate	VERB
bracis-28399	14	22	the	the	DET
bracis-28399	14	23	expression	expression	NOUN
bracis-28399	14	24	of	of	ADP
bracis-28399	14	25	that	that	DET
bracis-28399	14	26	gene	gene	NOUN
bracis-28399	14	27	 	 	SPACE
bracis-28399	15	1	[	[	X
bracis-28399	15	2	17	17	NUM
bracis-28399	15	3	]	]	PUNCT
bracis-28399	15	4	.	.	PUNCT
bracis-28399	16	1	the	the	DET
bracis-28399	16	2	promoter	promoter	NOUN
bracis-28399	16	3	region	region	NOUN
bracis-28399	16	4	contains	contain	VERB
bracis-28399	16	5	binding	bind	VERB
bracis-28399	16	6	sites	site	NOUN
bracis-28399	16	7	for	for	ADP
bracis-28399	16	8	transcription	transcription	NOUN
bracis-28399	16	9	factors	factor	NOUN
bracis-28399	16	10	,	,	PUNCT
bracis-28399	16	11	which	which	PRON
bracis-28399	16	12	are	be	AUX
bracis-28399	16	13	proteins	protein	NOUN
bracis-28399	16	14	that	that	PRON
bracis-28399	16	15	bind	bind	VERB
bracis-28399	16	16	to	to	ADP
bracis-28399	16	17	the	the	DET
bracis-28399	16	18	promoter	promoter	NOUN
bracis-28399	16	19	and	and	CCONJ
bracis-28399	16	20	recruit	recruit	NOUN
bracis-28399	16	21	rna	rna	NOUN
bracis-28399	16	22	polymerase	polymerase	NOUN
bracis-28399	16	23	to	to	PART
bracis-28399	16	24	initiate	initiate	VERB
bracis-28399	16	25	transcription	transcription	NOUN
bracis-28399	16	26	.	.	PUNCT
bracis-28399	17	1	the	the	DET
bracis-28399	17	2	specific	specific	ADJ
bracis-28399	17	3	pattern	pattern	NOUN
bracis-28399	17	4	of	of	ADP
bracis-28399	17	5	binding	bind	VERB
bracis-28399	17	6	sites	site	NOUN
bracis-28399	17	7	in	in	ADP
bracis-28399	17	8	the	the	DET
bracis-28399	17	9	promoter	promoter	NOUN
bracis-28399	17	10	determines	determine	VERB
bracis-28399	17	11	the	the	DET
bracis-28399	17	12	level	level	NOUN
bracis-28399	17	13	of	of	ADP
bracis-28399	17	14	gene	gene	NOUN
bracis-28399	17	15	expression	expression	NOUN
bracis-28399	17	16	and	and	CCONJ
bracis-28399	17	17	the	the	DET
bracis-28399	17	18	conditions	condition	NOUN
bracis-28399	17	19	under	under	ADP
bracis-28399	17	20	which	which	PRON
bracis-28399	17	21	the	the	DET
bracis-28399	17	22	gene	gene	NOUN
bracis-28399	17	23	is	be	AUX
bracis-28399	17	24	active	active	ADJ
bracis-28399	17	25	 	 	SPACE
bracis-28399	18	1	[	[	X
bracis-28399	18	2	5	5	NUM
bracis-28399	18	3	]	]	PUNCT
bracis-28399	18	4	.	.	PUNCT
bracis-28399	19	1	high	high	ADJ
bracis-28399	19	2	-	-	PUNCT
bracis-28399	19	3	resolution	resolution	NOUN
bracis-28399	19	4	promoter	promoter	NOUN
bracis-28399	19	5	recognition	recognition	NOUN
bracis-28399	19	6	in	in	ADP
bracis-28399	19	7	dna	dna	PROPN
bracis-28399	19	8	is	be	AUX
bracis-28399	19	9	an	an	DET
bracis-28399	19	10	important	important	ADJ
bracis-28399	19	11	area	area	NOUN
bracis-28399	19	12	of	of	ADP
bracis-28399	19	13	research	research	NOUN
bracis-28399	19	14	in	in	ADP
bracis-28399	19	15	bioinformatics	bioinformatics	NOUN
bracis-28399	19	16	.	.	PUNCT
bracis-28399	20	1	it	it	PRON
bracis-28399	20	2	involves	involve	VERB
bracis-28399	20	3	the	the	DET
bracis-28399	20	4	use	use	NOUN
bracis-28399	20	5	of	of	ADP
bracis-28399	20	6	algorithms	algorithm	NOUN
bracis-28399	20	7	to	to	PART
bracis-28399	20	8	find	find	VERB
bracis-28399	20	9	the	the	DET
bracis-28399	20	10	transcription	transcription	NOUN
bracis-28399	20	11	start	start	VERB
bracis-28399	20	12	site	site	NOUN
bracis-28399	20	13	(	(	PUNCT
bracis-28399	20	14	tss	tss	PROPN
bracis-28399	20	15	)	)	PUNCT
bracis-28399	20	16	of	of	ADP
bracis-28399	20	17	a	a	DET
bracis-28399	20	18	gene	gene	NOUN
bracis-28399	20	19	without	without	ADP
bracis-28399	20	20	the	the	DET
bracis-28399	20	21	need	need	NOUN
bracis-28399	20	22	for	for	ADP
bracis-28399	20	23	laborious	laborious	ADJ
bracis-28399	20	24	and	and	CCONJ
bracis-28399	20	25	costly	costly	ADJ
bracis-28399	20	26	experimental	experimental	ADJ
bracis-28399	20	27	techniques	technique	NOUN
bracis-28399	20	28	such	such	ADJ
bracis-28399	20	29	as	as	ADP
bracis-28399	20	30	aligning	align	VERB
bracis-28399	20	31	expressed	express	VERB
bracis-28399	20	32	sequence	sequence	NOUN
bracis-28399	20	33	tags	tag	NOUN
bracis-28399	20	34	(	(	PUNCT
bracis-28399	20	35	ests	est	NOUN
bracis-28399	20	36	)	)	PUNCT
bracis-28399	20	37	,	,	PUNCT
bracis-28399	20	38	complementary	complementary	ADJ
bracis-28399	20	39	dnas	dna	NOUN
bracis-28399	20	40	(	(	PUNCT
bracis-28399	20	41	cdnas	cdnas	PROPN
bracis-28399	20	42	)	)	PUNCT
bracis-28399	20	43	or	or	CCONJ
bracis-28399	20	44	messenger	messenger	NOUN
bracis-28399	20	45	rnas	rna	NOUN
bracis-28399	20	46	(	(	PUNCT
bracis-28399	20	47	mrnas	mrnas	PROPN
bracis-28399	20	48	)	)	PUNCT
bracis-28399	20	49	to	to	ADP
bracis-28399	20	50	the	the	DET
bracis-28399	20	51	entire	entire	ADJ
bracis-28399	20	52	genome	genome	NOUN
bracis-28399	20	53	 	 	SPACE
bracis-28399	21	1	[	[	X
bracis-28399	21	2	33	33	NUM
bracis-28399	21	3	]	]	PUNCT
bracis-28399	21	4	.	.	PUNCT
bracis-28399	22	1	the	the	DET
bracis-28399	22	2	tss	tss	NOUN
bracis-28399	22	3	is	be	AUX
bracis-28399	22	4	a	a	DET
bracis-28399	22	5	specific	specific	ADJ
bracis-28399	22	6	genomic	genomic	NOUN
bracis-28399	22	7	location	location	NOUN
bracis-28399	22	8	within	within	ADP
bracis-28399	22	9	the	the	DET
bracis-28399	22	10	promoter	promoter	NOUN
bracis-28399	22	11	region	region	NOUN
bracis-28399	22	12	where	where	SCONJ
bracis-28399	22	13	rna	rna	NOUN
bracis-28399	22	14	polymerase	polymerase	NOUN
bracis-28399	22	15	binds	bind	VERB
bracis-28399	22	16	and	and	CCONJ
bracis-28399	22	17	initiates	initiate	VERB
bracis-28399	22	18	transcription	transcription	NOUN
bracis-28399	22	19	.	.	PUNCT
bracis-28399	23	1	it	it	PRON
bracis-28399	23	2	marks	mark	VERB
bracis-28399	23	3	the	the	DET
bracis-28399	23	4	starting	starting	NOUN
bracis-28399	23	5	point	point	NOUN
bracis-28399	23	6	of	of	ADP
bracis-28399	23	7	the	the	DET
bracis-28399	23	8	transcription	transcription	NOUN
bracis-28399	23	9	process	process	NOUN
bracis-28399	23	10	,	,	PUNCT
bracis-28399	23	11	where	where	SCONJ
bracis-28399	23	12	the	the	DET
bracis-28399	23	13	dna	dna	PROPN
bracis-28399	23	14	sequence	sequence	NOUN
bracis-28399	23	15	is	be	AUX
bracis-28399	23	16	transcribed	transcribe	VERB
bracis-28399	23	17	into	into	ADP
bracis-28399	23	18	rna	rna	NOUN
bracis-28399	23	19	.	.	PUNCT
bracis-28399	24	1	defining	define	VERB
bracis-28399	24	2	the	the	DET
bracis-28399	24	3	tss	tss	NOUN
bracis-28399	24	4	position	position	NOUN
bracis-28399	24	5	as	as	ADP
bracis-28399	24	6	a	a	DET
bracis-28399	24	7	reference	reference	NOUN
bracis-28399	24	8	,	,	PUNCT
bracis-28399	24	9	the	the	DET
bracis-28399	24	10	upstream	upstream	ADJ
bracis-28399	24	11	region	region	NOUN
bracis-28399	24	12	is	be	AUX
bracis-28399	24	13	the	the	DET
bracis-28399	24	14	dna	dna	PROPN
bracis-28399	24	15	sequence	sequence	NOUN
bracis-28399	24	16	located	locate	VERB
bracis-28399	24	17	before	before	SCONJ
bracis-28399	24	18	the	the	DET
bracis-28399	24	19	transcription	transcription	NOUN
bracis-28399	24	20	start	start	VERB
bracis-28399	24	21	site	site	NOUN
bracis-28399	24	22	,	,	PUNCT
bracis-28399	24	23	and	and	CCONJ
bracis-28399	24	24	the	the	DET
bracis-28399	24	25	downstream	downstream	ADJ
bracis-28399	24	26	region	region	NOUN
bracis-28399	24	27	is	be	AUX
bracis-28399	24	28	situated	situate	VERB
bracis-28399	24	29	after	after	ADP
bracis-28399	24	30	the	the	DET
bracis-28399	24	31	tss	tss	NOUN
bracis-28399	24	32	.	.	PUNCT
bracis-28399	25	1	identifying	identify	VERB
bracis-28399	25	2	the	the	DET
bracis-28399	25	3	promoter	promoter	NOUN
bracis-28399	25	4	region	region	NOUN
bracis-28399	25	5	allows	allow	VERB
bracis-28399	25	6	us	we	PRON
bracis-28399	25	7	to	to	PART
bracis-28399	25	8	study	study	VERB
bracis-28399	25	9	the	the	DET
bracis-28399	25	10	regulation	regulation	NOUN
bracis-28399	25	11	of	of	ADP
bracis-28399	25	12	gene	gene	NOUN
bracis-28399	25	13	expression	expression	NOUN
bracis-28399	25	14	and	and	CCONJ
bracis-28399	25	15	understand	understand	VERB
bracis-28399	25	16	how	how	SCONJ
bracis-28399	25	17	different	different	ADJ
bracis-28399	25	18	genes	gene	NOUN
bracis-28399	25	19	are	be	AUX
bracis-28399	25	20	controlled	control	VERB
bracis-28399	25	21	in	in	ADP
bracis-28399	25	22	various	various	ADJ
bracis-28399	25	23	tissues	tissue	NOUN
bracis-28399	25	24	,	,	PUNCT
bracis-28399	25	25	conditions	condition	NOUN
bracis-28399	25	26	,	,	PUNCT
bracis-28399	25	27	and	and	CCONJ
bracis-28399	25	28	stages	stage	NOUN
bracis-28399	25	29	of	of	ADP
bracis-28399	25	30	development	development	NOUN
bracis-28399	25	31	 	 	SPACE
bracis-28399	26	1	[	[	X
bracis-28399	26	2	31	31	NUM
bracis-28399	26	3	]	]	PUNCT
bracis-28399	26	4	.	.	PUNCT
bracis-28399	27	1	in	in	ADP
bracis-28399	27	2	addition	addition	NOUN
bracis-28399	27	3	,	,	PUNCT
bracis-28399	27	4	by	by	ADP
bracis-28399	27	5	identifying	identify	VERB
bracis-28399	27	6	the	the	DET
bracis-28399	27	7	promoter	promoter	NOUN
bracis-28399	27	8	regions	region	NOUN
bracis-28399	27	9	for	for	ADP
bracis-28399	27	10	a	a	DET
bracis-28399	27	11	set	set	NOUN
bracis-28399	27	12	of	of	ADP
bracis-28399	27	13	genes	gene	NOUN
bracis-28399	27	14	,	,	PUNCT
bracis-28399	27	15	one	one	PRON
bracis-28399	27	16	can	can	AUX
bracis-28399	27	17	infer	infer	VERB
bracis-28399	27	18	information	information	NOUN
bracis-28399	27	19	about	about	ADP
bracis-28399	27	20	the	the	DET
bracis-28399	27	21	molecular	molecular	ADJ
bracis-28399	27	22	mechanisms	mechanism	NOUN
bracis-28399	27	23	that	that	PRON
bracis-28399	27	24	control	control	VERB
bracis-28399	27	25	gene	gene	NOUN
bracis-28399	27	26	expression	expression	NOUN
bracis-28399	27	27	and	and	CCONJ
bracis-28399	27	28	how	how	SCONJ
bracis-28399	27	29	these	these	DET
bracis-28399	27	30	mechanisms	mechanism	NOUN
bracis-28399	27	31	may	may	AUX
bracis-28399	27	32	change	change	VERB
bracis-28399	27	33	in	in	ADP
bracis-28399	27	34	response	response	NOUN
bracis-28399	27	35	to	to	ADP
bracis-28399	27	36	different	different	ADJ
bracis-28399	27	37	stimuli	stimulus	NOUN
bracis-28399	27	38	.	.	PUNCT
bracis-28399	28	1	so	so	ADV
bracis-28399	28	2	,	,	PUNCT
bracis-28399	28	3	these	these	DET
bracis-28399	28	4	algorithms	algorithm	NOUN
bracis-28399	28	5	can	can	AUX
bracis-28399	28	6	efficiently	efficiently	ADV
bracis-28399	28	7	delimit	delimit	VERB
bracis-28399	28	8	regions	region	NOUN
bracis-28399	28	9	involved	involve	VERB
bracis-28399	28	10	in	in	ADP
bracis-28399	28	11	transcriptional	transcriptional	ADJ
bracis-28399	28	12	regulation	regulation	NOUN
bracis-28399	28	13	,	,	PUNCT
bracis-28399	28	14	guiding	guide	VERB
bracis-28399	28	15	further	further	ADJ
bracis-28399	28	16	experimental	experimental	ADJ
bracis-28399	28	17	work	work	NOUN
bracis-28399	28	18	,	,	PUNCT
bracis-28399	28	19	given	give	VERB
bracis-28399	28	20	the	the	DET
bracis-28399	28	21	lower	low	ADJ
bracis-28399	28	22	cost	cost	NOUN
bracis-28399	28	23	associated	associate	VERB
bracis-28399	28	24	with	with	ADP
bracis-28399	28	25	computational	computational	ADJ
bracis-28399	28	26	approaches	approach	NOUN
bracis-28399	28	27	 	 	SPACE
bracis-28399	29	1	[	[	X
bracis-28399	29	2	33	33	NUM
bracis-28399	29	3	]	]	PUNCT
bracis-28399	29	4	.	.	PUNCT
bracis-28399	30	1	the	the	DET
bracis-28399	30	2	identification	identification	NOUN
bracis-28399	30	3	of	of	ADP
bracis-28399	30	4	promoter	promoter	NOUN
bracis-28399	30	5	regions	region	NOUN
bracis-28399	30	6	is	be	AUX
bracis-28399	30	7	often	often	ADV
bracis-28399	30	8	performed	perform	VERB
bracis-28399	30	9	by	by	ADP
bracis-28399	30	10	computational	computational	ADJ
bracis-28399	30	11	methods	method	NOUN
bracis-28399	30	12	,	,	PUNCT
bracis-28399	30	13	such	such	ADJ
bracis-28399	30	14	as	as	ADP
bracis-28399	30	15	promoter	promoter	NOUN
bracis-28399	30	16	prediction	prediction	NOUN
bracis-28399	30	17	algorithms	algorithm	NOUN
bracis-28399	30	18	,	,	PUNCT
bracis-28399	30	19	that	that	PRON
bracis-28399	30	20	analyze	analyze	VERB
bracis-28399	30	21	the	the	DET
bracis-28399	30	22	dna	dna	PROPN
bracis-28399	30	23	sequence	sequence	NOUN
bracis-28399	30	24	and	and	CCONJ
bracis-28399	30	25	look	look	VERB
bracis-28399	30	26	for	for	ADP
bracis-28399	30	27	characteristic	characteristic	ADJ
bracis-28399	30	28	features	feature	NOUN
bracis-28399	30	29	such	such	ADJ
bracis-28399	30	30	as	as	ADP
bracis-28399	30	31	tata	tata	NOUN
bracis-28399	30	32	boxes	box	NOUN
bracis-28399	30	33	 	 	SPACE
bracis-28399	31	1	[	[	X
bracis-28399	31	2	20	20	NUM
bracis-28399	31	3	]	]	PUNCT
bracis-28399	31	4	and	and	CCONJ
bracis-28399	31	5	cpg	cpg	PROPN
bracis-28399	31	6	islands	island	NOUN
bracis-28399	31	7	 	 	SPACE
bracis-28399	32	1	[	[	X
bracis-28399	32	2	10	10	NUM
bracis-28399	32	3	]	]	PUNCT
bracis-28399	32	4	and	and	CCONJ
bracis-28399	32	5	other	other	ADJ
bracis-28399	32	6	short	short	ADJ
bracis-28399	32	7	conserved	conserve	VERB
bracis-28399	32	8	sequences	sequence	NOUN
bracis-28399	32	9	.	.	PUNCT
bracis-28399	33	1	however	however	ADV
bracis-28399	33	2	,	,	PUNCT
bracis-28399	33	3	multiple	multiple	ADJ
bracis-28399	33	4	groups	group	NOUN
bracis-28399	33	5	of	of	ADP
bracis-28399	33	6	genes	gene	NOUN
bracis-28399	33	7	do	do	AUX
bracis-28399	33	8	n’t	not	PART
bracis-28399	33	9	contain	contain	VERB
bracis-28399	33	10	these	these	DET
bracis-28399	33	11	features	feature	NOUN
bracis-28399	33	12	.	.	PUNCT
bracis-28399	34	1	methods	method	NOUN
bracis-28399	34	2	for	for	ADP
bracis-28399	34	3	identifying	identify	VERB
bracis-28399	34	4	promoters	promoter	NOUN
bracis-28399	34	5	have	have	AUX
bracis-28399	34	6	been	be	AUX
bracis-28399	34	7	widely	widely	ADV
bracis-28399	34	8	adopted	adopt	VERB
bracis-28399	34	9	in	in	ADP
bracis-28399	34	10	bioinformatics	bioinformatics	NOUN
bracis-28399	34	11	,	,	PUNCT
bracis-28399	34	12	as	as	SCONJ
bracis-28399	34	13	it	it	PRON
bracis-28399	34	14	allows	allow	VERB
bracis-28399	34	15	for	for	ADP
bracis-28399	34	16	the	the	DET
bracis-28399	34	17	generation	generation	NOUN
bracis-28399	34	18	of	of	ADP
bracis-28399	34	19	comprehensive	comprehensive	ADJ
bracis-28399	34	20	maps	map	NOUN
bracis-28399	34	21	of	of	ADP
bracis-28399	34	22	promoter	promoter	NOUN
bracis-28399	34	23	regions	region	NOUN
bracis-28399	34	24	in	in	ADP
bracis-28399	34	25	a	a	DET
bracis-28399	34	26	genome	genome	NOUN
bracis-28399	34	27	which	which	PRON
bracis-28399	34	28	can	can	AUX
bracis-28399	34	29	be	be	AUX
bracis-28399	34	30	used	use	VERB
bracis-28399	34	31	for	for	ADP
bracis-28399	34	32	further	further	ADJ
bracis-28399	34	33	analysis	analysis	NOUN
bracis-28399	34	34	,	,	PUNCT
bracis-28399	34	35	such	such	ADJ
bracis-28399	34	36	as	as	ADP
bracis-28399	34	37	studying	study	VERB
bracis-28399	34	38	gene	gene	NOUN
bracis-28399	34	39	regulation	regulation	NOUN
bracis-28399	34	40	in	in	ADP
bracis-28399	34	41	response	response	NOUN
bracis-28399	34	42	to	to	ADP
bracis-28399	34	43	environmental	environmental	ADJ
bracis-28399	34	44	cues	cue	NOUN
bracis-28399	34	45	or	or	CCONJ
bracis-28399	34	46	identifying	identify	VERB
bracis-28399	34	47	novel	novel	ADJ
bracis-28399	34	48	regulatory	regulatory	ADJ
bracis-28399	34	49	elements	element	NOUN
bracis-28399	34	50	.	.	PUNCT
bracis-28399	35	1	despite	despite	SCONJ
bracis-28399	35	2	recent	recent	ADJ
bracis-28399	35	3	advances	advance	NOUN
bracis-28399	35	4	in	in	ADP
bracis-28399	35	5	promoter	promoter	NOUN
bracis-28399	35	6	recognition	recognition	NOUN
bracis-28399	35	7	algorithms	algorithm	NOUN
bracis-28399	35	8	,	,	PUNCT
bracis-28399	35	9	accurately	accurately	ADV
bracis-28399	35	10	identifying	identify	VERB
bracis-28399	35	11	promoters	promoter	NOUN
bracis-28399	35	12	remains	remains	AUX
bracis-28399	35	13	challenging	challenge	VERB
bracis-28399	35	14	due	due	ADP
bracis-28399	35	15	to	to	ADP
bracis-28399	35	16	the	the	DET
bracis-28399	35	17	diversity	diversity	NOUN
bracis-28399	35	18	and	and	CCONJ
bracis-28399	35	19	complexity	complexity	NOUN
bracis-28399	35	20	of	of	ADP
bracis-28399	35	21	these	these	DET
bracis-28399	35	22	sequences	sequence	NOUN
bracis-28399	35	23	in	in	ADP
bracis-28399	35	24	genome	genome	NOUN
bracis-28399	35	25	 	 	SPACE
bracis-28399	36	1	[	[	X
bracis-28399	36	2	34	34	NUM
bracis-28399	36	3	]	]	PUNCT
bracis-28399	36	4	.	.	PUNCT
bracis-28399	37	1	methods	method	NOUN
bracis-28399	37	2	for	for	ADP
bracis-28399	37	3	promoter	promoter	NOUN
bracis-28399	37	4	prediction	prediction	NOUN
bracis-28399	37	5	have	have	AUX
bracis-28399	37	6	been	be	AUX
bracis-28399	37	7	established	establish	VERB
bracis-28399	37	8	to	to	PART
bracis-28399	37	9	recognize	recognize	VERB
bracis-28399	37	10	promoter	promoter	NOUN
bracis-28399	37	11	regions	region	NOUN
bracis-28399	37	12	within	within	ADP
bracis-28399	37	13	the	the	DET
bracis-28399	37	14	dna	dna	PROPN
bracis-28399	37	15	sequences	sequence	NOUN
bracis-28399	37	16	of	of	ADP
bracis-28399	37	17	both	both	CCONJ
bracis-28399	37	18	prokaryotic	prokaryotic	ADJ
bracis-28399	37	19	and	and	CCONJ
bracis-28399	37	20	eukaryotic	eukaryotic	ADJ
bracis-28399	37	21	organisms	organism	NOUN
bracis-28399	37	22	.	.	PUNCT
bracis-28399	38	1	these	these	DET
bracis-28399	38	2	methods	method	NOUN
bracis-28399	38	3	harness	harness	VERB
bracis-28399	38	4	various	various	ADJ
bracis-28399	38	5	machine	machine	NOUN
bracis-28399	38	6	learning	learn	VERB
bracis-28399	38	7	algorithms	algorithm	NOUN
bracis-28399	38	8	for	for	ADP
bracis-28399	38	9	their	their	PRON
bracis-28399	38	10	functioning	functioning	NOUN
bracis-28399	38	11	.	.	PUNCT
bracis-28399	39	1	the	the	DET
bracis-28399	39	2	support	support	NOUN
bracis-28399	39	3	vector	vector	NOUN
bracis-28399	39	4	machines	machine	NOUN
bracis-28399	39	5	(	(	PUNCT
bracis-28399	39	6	svm	svm	PROPN
bracis-28399	39	7	)	)	PUNCT
bracis-28399	39	8	 	 	SPACE
bracis-28399	39	9	[	[	X
bracis-28399	39	10	9	9	NUM
bracis-28399	39	11	]	]	PUNCT
bracis-28399	39	12	were	be	AUX
bracis-28399	39	13	used	use	VERB
bracis-28399	39	14	in	in	ADP
bracis-28399	39	15	[	[	X
bracis-28399	39	16	26	26	NUM
bracis-28399	39	17	]	]	PUNCT
bracis-28399	39	18	to	to	PART
bracis-28399	39	19	evaluate	evaluate	VERB
bracis-28399	39	20	the	the	DET
bracis-28399	39	21	strength	strength	NOUN
bracis-28399	39	22	in	in	ADP
bracis-28399	39	23	a	a	DET
bracis-28399	39	24	dataset	dataset	NOUN
bracis-28399	39	25	of	of	ADP
bracis-28399	39	26	escherichia	escherichia	NOUN
bracis-28399	39	27	coli	coli	NOUN
bracis-28399	39	28	trc	trc	NOUN
bracis-28399	39	29	promoter	promoter	NOUN
bracis-28399	39	30	.	.	PUNCT
bracis-28399	40	1	[	[	X
bracis-28399	40	2	1	1	X
bracis-28399	40	3	]	]	PUNCT
bracis-28399	40	4	applied	apply	VERB
bracis-28399	40	5	a	a	DET
bracis-28399	40	6	genetic	genetic	ADJ
bracis-28399	40	7	algorithm	algorithm	NOUN
bracis-28399	40	8	to	to	PART
bracis-28399	40	9	calibrate	calibrate	VERB
bracis-28399	40	10	the	the	DET
bracis-28399	40	11	svm	svm	ADJ
bracis-28399	40	12	hyperparameters	hyperparameter	NOUN
bracis-28399	40	13	using	use	VERB
bracis-28399	40	14	a	a	DET
bracis-28399	40	15	human	human	ADJ
bracis-28399	40	16	promoter	promoter	NOUN
bracis-28399	40	17	dataset	dataset	NOUN
bracis-28399	40	18	.	.	PUNCT
bracis-28399	41	1	[	[	X
bracis-28399	41	2	3	3	X
bracis-28399	41	3	]	]	PUNCT
bracis-28399	41	4	used	use	VERB
bracis-28399	41	5	datasets	dataset	NOUN
bracis-28399	41	6	of	of	ADP
bracis-28399	41	7	three	three	NUM
bracis-28399	41	8	higher	high	ADJ
bracis-28399	41	9	eukaryotes	eukaryote	NOUN
bracis-28399	41	10	,	,	PUNCT
bracis-28399	41	11	saccharomyces	saccharomyce	NOUN
bracis-28399	41	12	cerevisiae	cerevisiae	NOUN
bracis-28399	41	13	,	,	PUNCT
bracis-28399	41	14	a.	a.	NOUN
bracis-28399	41	15	thaliana	thaliana	PROPN
bracis-28399	41	16	,	,	PUNCT
bracis-28399	41	17	and	and	CCONJ
bracis-28399	41	18	human	human	NOUN
bracis-28399	41	19	,	,	PUNCT
bracis-28399	41	20	to	to	PART
bracis-28399	41	21	train	train	VERB
bracis-28399	41	22	convolutional	convolutional	ADJ
bracis-28399	41	23	neural	neural	ADJ
bracis-28399	41	24	network	network	NOUN
bracis-28399	41	25	(	(	PUNCT
bracis-28399	41	26	cnn	cnn	PROPN
bracis-28399	41	27	)	)	PUNCT
bracis-28399	41	28	 	 	SPACE
bracis-28399	42	1	[	[	X
bracis-28399	42	2	24	24	NUM
bracis-28399	42	3	]	]	PUNCT
bracis-28399	42	4	with	with	ADP
bracis-28399	42	5	long	long	ADJ
bracis-28399	42	6	short	short	ADJ
bracis-28399	42	7	term	term	NOUN
bracis-28399	42	8	memory	memory	NOUN
bracis-28399	42	9	(	(	PUNCT
bracis-28399	42	10	lstm	lstm	NOUN
bracis-28399	42	11	)	)	PUNCT
bracis-28399	42	12	 	 	SPACE
bracis-28399	43	1	[	[	X
bracis-28399	43	2	18	18	NUM
bracis-28399	43	3	]	]	PUNCT
bracis-28399	43	4	and	and	CCONJ
bracis-28399	43	5	random	random	ADJ
bracis-28399	43	6	forest	forest	NOUN
bracis-28399	43	7	(	(	PUNCT
bracis-28399	43	8	rf	rf	NOUN
bracis-28399	43	9	)	)	PUNCT
bracis-28399	43	10	 	 	SPACE
bracis-28399	44	1	[	[	X
bracis-28399	44	2	4	4	NUM
bracis-28399	44	3	]	]	ADJ
bracis-28399	44	4	models	model	NOUN
bracis-28399	44	5	.	.	PUNCT
bracis-28399	45	1	a	a	DET
bracis-28399	45	2	study	study	NOUN
bracis-28399	45	3	of	of	ADP
bracis-28399	45	4	promoter	promoter	NOUN
bracis-28399	45	5	prediction	prediction	NOUN
bracis-28399	45	6	on	on	ADP
bracis-28399	45	7	bacterial	bacterial	ADJ
bracis-28399	45	8	datasets	dataset	NOUN
bracis-28399	45	9	was	be	AUX
bracis-28399	45	10	performed	perform	VERB
bracis-28399	45	11	by	by	ADP
bracis-28399	45	12	 	 	SPACE
bracis-28399	45	13	[	[	X
bracis-28399	45	14	8	8	NUM
bracis-28399	45	15	]	]	PUNCT
bracis-28399	45	16	using	use	VERB
bracis-28399	45	17	rf	rf	ADJ
bracis-28399	45	18	models	model	NOUN
bracis-28399	45	19	.	.	PUNCT
bracis-28399	46	1	in	in	ADP
bracis-28399	46	2	 	 	SPACE
bracis-28399	46	3	[	[	X
bracis-28399	46	4	25	25	NUM
bracis-28399	46	5	]	]	PUNCT
bracis-28399	46	6	a	a	DET
bracis-28399	46	7	stacked	stack	VERB
bracis-28399	46	8	ensemble	ensemble	NOUN
bracis-28399	46	9	of	of	ADP
bracis-28399	46	10	lightgbm	lightgbm	ADJ
bracis-28399	46	11	 	 	SPACE
bracis-28399	46	12	[	[	X
bracis-28399	46	13	21	21	NUM
bracis-28399	46	14	]	]	X
bracis-28399	46	15	,	,	PUNCT
bracis-28399	46	16	xgboost	xgboost	PRON
bracis-28399	46	17	 	 	SPACE
bracis-28399	47	1	[	[	PUNCT
bracis-28399	47	2	6	6	NUM
bracis-28399	47	3	]	]	PUNCT
bracis-28399	47	4	,	,	PUNCT
bracis-28399	47	5	adaboost	adaboost	ADV
bracis-28399	47	6	 	 	SPACE
bracis-28399	47	7	[	[	X
bracis-28399	47	8	14	14	NUM
bracis-28399	47	9	]	]	PUNCT
bracis-28399	47	10	,	,	PUNCT
bracis-28399	47	11	gbdt	gbdt	NOUN
bracis-28399	47	12	 	 	SPACE
bracis-28399	47	13	[	[	X
bracis-28399	47	14	15	15	NUM
bracis-28399	47	15	]	]	PUNCT
bracis-28399	47	16	,	,	PUNCT
bracis-28399	47	17	and	and	CCONJ
bracis-28399	47	18	rf	rf	NOUN
bracis-28399	47	19	models	model	NOUN
bracis-28399	47	20	were	be	AUX
bracis-28399	47	21	used	use	VERB
bracis-28399	47	22	on	on	ADP
bracis-28399	47	23	a	a	DET
bracis-28399	47	24	escherichia	escherichia	NOUN
bracis-28399	47	25	coli	coli	NOUN
bracis-28399	47	26	dataset	dataset	NOUN
bracis-28399	47	27	.	.	PUNCT
bracis-28399	48	1	the	the	DET
bracis-28399	48	2	work	work	NOUN
bracis-28399	48	3	of	of	ADP
bracis-28399	48	4	[	[	X
bracis-28399	48	5	30	30	NUM
bracis-28399	48	6	]	]	PUNCT
bracis-28399	48	7	proposed	propose	VERB
bracis-28399	48	8	some	some	DET
bracis-28399	48	9	cnn	cnn	PROPN
bracis-28399	48	10	models	model	NOUN
bracis-28399	48	11	to	to	PART
bracis-28399	48	12	identify	identify	VERB
bracis-28399	48	13	promoters	promoter	NOUN
bracis-28399	48	14	on	on	ADP
bracis-28399	48	15	different	different	ADJ
bracis-28399	48	16	organisms	organism	NOUN
bracis-28399	48	17	datasets	dataset	NOUN
bracis-28399	48	18	.	.	PUNCT
bracis-28399	49	1	in	in	ADP
bracis-28399	49	2	[	[	X
bracis-28399	49	3	27	27	NUM
bracis-28399	49	4	]	]	PUNCT
bracis-28399	49	5	the	the	DET
bracis-28399	49	6	same	same	ADJ
bracis-28399	49	7	datasets	dataset	NOUN
bracis-28399	49	8	were	be	AUX
bracis-28399	49	9	used	use	VERB
bracis-28399	49	10	to	to	PART
bracis-28399	49	11	train	train	VERB
bracis-28399	49	12	a	a	DET
bracis-28399	49	13	capsule	capsule	ADJ
bracis-28399	49	14	neural	neural	ADJ
bracis-28399	49	15	network	network	NOUN
bracis-28399	49	16	(	(	PUNCT
bracis-28399	49	17	capsnet	capsnet	NOUN
bracis-28399	49	18	)	)	PUNCT
bracis-28399	49	19	 	 	SPACE
bracis-28399	50	1	[	[	X
bracis-28399	50	2	29	29	NUM
bracis-28399	50	3	]	]	PUNCT
bracis-28399	50	4	.	.	PUNCT
bracis-28399	51	1	the	the	DET
bracis-28399	51	2	existing	exist	VERB
bracis-28399	51	3	literature	literature	NOUN
bracis-28399	51	4	of	of	ADP
bracis-28399	51	5	promoter	promoter	NOUN
bracis-28399	51	6	prediction	prediction	NOUN
bracis-28399	51	7	lacks	lack	VERB
bracis-28399	51	8	comprehensive	comprehensive	ADJ
bracis-28399	51	9	investigations	investigation	NOUN
bracis-28399	51	10	regarding	regard	VERB
bracis-28399	51	11	the	the	DET
bracis-28399	51	12	influence	influence	NOUN
bracis-28399	51	13	of	of	ADP
bracis-28399	51	14	dna	dna	PROPN
bracis-28399	51	15	physicochemical	physicochemical	ADJ
bracis-28399	51	16	properties	property	NOUN
bracis-28399	51	17	on	on	ADP
bracis-28399	51	18	the	the	DET
bracis-28399	51	19	accuracy	accuracy	NOUN
bracis-28399	51	20	of	of	ADP
bracis-28399	51	21	promoter	promoter	NOUN
bracis-28399	51	22	prediction	prediction	NOUN
bracis-28399	51	23	across	across	ADP
bracis-28399	51	24	diverse	diverse	ADJ
bracis-28399	51	25	organisms	organism	NOUN
bracis-28399	51	26	.	.	PUNCT
bracis-28399	52	1	consequently	consequently	ADV
bracis-28399	52	2	,	,	PUNCT
bracis-28399	52	3	the	the	DET
bracis-28399	52	4	primary	primary	ADJ
bracis-28399	52	5	objective	objective	NOUN
bracis-28399	52	6	of	of	ADP
bracis-28399	52	7	this	this	DET
bracis-28399	52	8	study	study	NOUN
bracis-28399	52	9	is	be	AUX
bracis-28399	52	10	to	to	PART
bracis-28399	52	11	examine	examine	VERB
bracis-28399	52	12	the	the	DET
bracis-28399	52	13	efficacy	efficacy	NOUN
bracis-28399	52	14	of	of	ADP
bracis-28399	52	15	features	feature	NOUN
bracis-28399	52	16	derived	derive	VERB
bracis-28399	52	17	from	from	ADP
bracis-28399	52	18	dna	dna	PROPN
bracis-28399	52	19	physicochemical	physicochemical	ADJ
bracis-28399	52	20	properties	property	NOUN
bracis-28399	52	21	in	in	ADP
bracis-28399	52	22	training	training	NOUN
bracis-28399	52	23	machine	machine	NOUN
bracis-28399	52	24	learning	learning	NOUN
bracis-28399	52	25	models	model	NOUN
bracis-28399	52	26	for	for	ADP
bracis-28399	52	27	predicting	predict	VERB
bracis-28399	52	28	promoter	promoter	NOUN
bracis-28399	52	29	regions	region	NOUN
bracis-28399	52	30	in	in	ADP
bracis-28399	52	31	both	both	CCONJ
bracis-28399	52	32	prokaryotic	prokaryotic	ADJ
bracis-28399	52	33	and	and	CCONJ
bracis-28399	52	34	eukaryotic	eukaryotic	ADJ
bracis-28399	52	35	organisms	organism	NOUN
bracis-28399	52	36	.	.	PUNCT
bracis-28399	53	1	to	to	PART
bracis-28399	53	2	assess	assess	VERB
bracis-28399	53	3	the	the	DET
bracis-28399	53	4	performance	performance	NOUN
bracis-28399	53	5	of	of	ADP
bracis-28399	53	6	our	our	PRON
bracis-28399	53	7	models	model	NOUN
bracis-28399	53	8	,	,	PUNCT
bracis-28399	53	9	we	we	PRON
bracis-28399	53	10	utilize	utilize	VERB
bracis-28399	53	11	the	the	DET
bracis-28399	53	12	datasets	dataset	NOUN
bracis-28399	53	13	introduced	introduce	VERB
bracis-28399	53	14	by	by	ADP
bracis-28399	53	15	umarov	umarov	PROPN
bracis-28399	53	16	et	et	PROPN
bracis-28399	53	17	al	al	PROPN
bracis-28399	53	18	.	.	PROPN
bracis-28399	54	1	(	(	PUNCT
bracis-28399	54	2	2017	2017	NUM
bracis-28399	54	3	)	)	PUNCT
bracis-28399	54	4	 	 	SPACE
bracis-28399	55	1	[	[	X
bracis-28399	55	2	30	30	NUM
bracis-28399	55	3	]	]	PUNCT
bracis-28399	55	4	,	,	PUNCT
bracis-28399	55	5	which	which	PRON
bracis-28399	55	6	encompass	encompass	VERB
bracis-28399	55	7	a	a	DET
bracis-28399	55	8	wide	wide	ADJ
bracis-28399	55	9	range	range	NOUN
bracis-28399	55	10	of	of	ADP
bracis-28399	55	11	organisms	organism	NOUN
bracis-28399	55	12	.	.	PUNCT
bracis-28399	56	1	for	for	ADP
bracis-28399	56	2	each	each	DET
bracis-28399	56	3	property	property	NOUN
bracis-28399	56	4	,	,	PUNCT
bracis-28399	56	5	we	we	PRON
bracis-28399	56	6	train	train	VERB
bracis-28399	56	7	and	and	CCONJ
bracis-28399	56	8	compare	compare	VERB
bracis-28399	56	9	multiple	multiple	ADJ
bracis-28399	56	10	machine	machine	NOUN
bracis-28399	56	11	learning	learning	NOUN
bracis-28399	56	12	models	model	NOUN
bracis-28399	56	13	,	,	PUNCT
bracis-28399	56	14	as	as	ADV
bracis-28399	56	15	well	well	ADV
bracis-28399	56	16	as	as	ADP
bracis-28399	56	17	ensembles	ensemble	NOUN
bracis-28399	56	18	of	of	ADP
bracis-28399	56	19	these	these	DET
bracis-28399	56	20	models	model	NOUN
bracis-28399	56	21	,	,	PUNCT
bracis-28399	56	22	to	to	PART
bracis-28399	56	23	identify	identify	VERB
bracis-28399	56	24	the	the	DET
bracis-28399	56	25	most	most	ADV
bracis-28399	56	26	effective	effective	ADJ
bracis-28399	56	27	properties	property	NOUN
bracis-28399	56	28	.	.	PUNCT
bracis-28399	57	1	to	to	PART
bracis-28399	57	2	evaluate	evaluate	VERB
bracis-28399	57	3	the	the	DET
bracis-28399	57	4	overall	overall	ADJ
bracis-28399	57	5	predictive	predictive	ADJ
bracis-28399	57	6	capacity	capacity	NOUN
bracis-28399	57	7	of	of	ADP
bracis-28399	57	8	these	these	DET
bracis-28399	57	9	models	model	NOUN
bracis-28399	57	10	,	,	PUNCT
bracis-28399	57	11	we	we	PRON
bracis-28399	57	12	compare	compare	VERB
bracis-28399	57	13	their	their	PRON
bracis-28399	57	14	performance	performance	NOUN
bracis-28399	57	15	against	against	ADP
bracis-28399	57	16	the	the	DET
bracis-28399	57	17	state	state	NOUN
bracis-28399	57	18	-	-	PUNCT
bracis-28399	57	19	of	of	ADP
bracis-28399	57	20	-	-	PUNCT
bracis-28399	57	21	the	the	DET
bracis-28399	57	22	-	-	PUNCT
bracis-28399	57	23	art	art	NOUN
bracis-28399	57	24	method	method	NOUN
bracis-28399	57	25	for	for	ADP
bracis-28399	57	26	these	these	DET
bracis-28399	57	27	datasets	dataset	NOUN
bracis-28399	57	28	,	,	PUNCT
bracis-28399	57	29	namely	namely	ADV
bracis-28399	57	30	cnnprom	cnnprom	VERB
bracis-28399	57	31	 	 	SPACE
bracis-28399	57	32	[	[	X
bracis-28399	57	33	29	29	NUM
bracis-28399	57	34	]	]	PUNCT
bracis-28399	57	35	.	.	PUNCT
bracis-28399	58	1	the	the	DET
bracis-28399	58	2	results	result	NOUN
bracis-28399	58	3	indicate	indicate	VERB
bracis-28399	58	4	that	that	SCONJ
bracis-28399	58	5	the	the	DET
bracis-28399	58	6	models	model	NOUN
bracis-28399	58	7	based	base	VERB
bracis-28399	58	8	solely	solely	ADV
bracis-28399	58	9	on	on	ADP
bracis-28399	58	10	properties	property	NOUN
bracis-28399	58	11	do	do	AUX
bracis-28399	58	12	not	not	PART
bracis-28399	58	13	yield	yield	VERB
bracis-28399	58	14	optimal	optimal	ADJ
bracis-28399	58	15	performance	performance	NOUN
bracis-28399	58	16	.	.	PUNCT
bracis-28399	59	1	still	still	ADV
bracis-28399	59	2	,	,	PUNCT
bracis-28399	59	3	they	they	PRON
bracis-28399	59	4	may	may	AUX
bracis-28399	59	5	serve	serve	VERB
bracis-28399	59	6	as	as	ADP
bracis-28399	59	7	a	a	DET
bracis-28399	59	8	foundational	foundational	ADJ
bracis-28399	59	9	step	step	NOUN
bracis-28399	59	10	for	for	ADP
bracis-28399	59	11	future	future	ADJ
bracis-28399	59	12	research	research	NOUN
bracis-28399	59	13	by	by	ADP
bracis-28399	59	14	combining	combine	VERB
bracis-28399	59	15	them	they	PRON
bracis-28399	59	16	with	with	ADP
bracis-28399	59	17	other	other	ADJ
bracis-28399	59	18	techniques	technique	NOUN
bracis-28399	59	19	and	and	CCONJ
bracis-28399	59	20	models	model	NOUN
bracis-28399	59	21	to	to	PART
bracis-28399	59	22	enhance	enhance	VERB
bracis-28399	59	23	predictive	predictive	ADJ
bracis-28399	59	24	accuracy	accuracy	NOUN
bracis-28399	59	25	.	.	PUNCT
bracis-28399	60	1	2	2	NUM
bracis-28399	60	2	materials	material	NOUN
bracis-28399	60	3	and	and	CCONJ
bracis-28399	60	4	 	 	SPACE
bracis-28399	60	5	methods	method	NOUN
bracis-28399	60	6	2.1	2.1	NUM
bracis-28399	60	7	benchmark	benchmark	NOUN
bracis-28399	60	8	datasets	dataset	NOUN
bracis-28399	60	9	the	the	DET
bracis-28399	60	10	seven	seven	NUM
bracis-28399	60	11	datasets	dataset	NOUN
bracis-28399	60	12	utilized	utilize	VERB
bracis-28399	60	13	in	in	ADP
bracis-28399	60	14	this	this	DET
bracis-28399	60	15	study	study	NOUN
bracis-28399	60	16	were	be	AUX
bracis-28399	60	17	sourced	source	VERB
bracis-28399	60	18	from	from	ADP
bracis-28399	60	19	the	the	DET
bracis-28399	60	20	supplementary	supplementary	ADJ
bracis-28399	60	21	materials	material	NOUN
bracis-28399	60	22	made	make	VERB
bracis-28399	60	23	available	available	ADJ
bracis-28399	60	24	by	by	ADP
bracis-28399	60	25	[	[	X
bracis-28399	60	26	30	30	NUM
bracis-28399	60	27	]	]	PUNCT
bracis-28399	60	28	and	and	CCONJ
bracis-28399	60	29	can	can	AUX
bracis-28399	60	30	be	be	AUX
bracis-28399	60	31	accessed	access	VERB
bracis-28399	60	32	on	on	ADP
bracis-28399	60	33	the	the	DET
bracis-28399	60	34	corresponding	corresponding	ADJ
bracis-28399	60	35	github	github	PROPN
bracis-28399	60	36	repositoryfootnote	repositoryfootnote	VERB
bracis-28399	60	37	1	1	NUM
bracis-28399	60	38	.	.	PUNCT
bracis-28399	61	1	regrettably	regrettably	ADV
bracis-28399	61	2	,	,	PUNCT
bracis-28399	61	3	the	the	DET
bracis-28399	61	4	dataset	dataset	NOUN
bracis-28399	61	5	pertaining	pertain	VERB
bracis-28399	61	6	to	to	ADP
bracis-28399	61	7	“	"	PUNCT
bracis-28399	61	8	human	human	PROPN
bracis-28399	61	9	tata	tata	NOUN
bracis-28399	61	10	”	"	PUNCT
bracis-28399	61	11	could	could	AUX
bracis-28399	61	12	not	not	PART
bracis-28399	61	13	be	be	AUX
bracis-28399	61	14	accessed	access	VERB
bracis-28399	61	15	through	through	ADP
bracis-28399	61	16	the	the	DET
bracis-28399	61	17	repository	repository	NOUN
bracis-28399	61	18	and	and	CCONJ
bracis-28399	61	19	therefore	therefore	ADV
bracis-28399	61	20	was	be	AUX
bracis-28399	61	21	excluded	exclude	VERB
bracis-28399	61	22	from	from	ADP
bracis-28399	61	23	the	the	DET
bracis-28399	61	24	analysis	analysis	NOUN
bracis-28399	61	25	in	in	ADP
bracis-28399	61	26	this	this	DET
bracis-28399	61	27	work	work	NOUN
bracis-28399	61	28	.	.	PUNCT
bracis-28399	62	1	the	the	DET
bracis-28399	62	2	eukaryotic	eukaryotic	ADJ
bracis-28399	62	3	organism	organism	NOUN
bracis-28399	62	4	sequences	sequence	NOUN
bracis-28399	62	5	,	,	PUNCT
bracis-28399	62	6	spanning	span	VERB
bracis-28399	62	7	251bp	251bp	NOUN
bracis-28399	62	8	(	(	PUNCT
bracis-28399	62	9	base	base	NOUN
bracis-28399	62	10	pairs	pair	NOUN
bracis-28399	62	11	)	)	PUNCT
bracis-28399	62	12	with	with	ADP
bracis-28399	62	13	a	a	DET
bracis-28399	62	14	transcription	transcription	NOUN
bracis-28399	62	15	start	start	NOUN
bracis-28399	62	16	site	site	NOUN
bracis-28399	62	17	(	(	PUNCT
bracis-28399	62	18	tss	tss	NOUN
bracis-28399	62	19	)	)	PUNCT
bracis-28399	62	20	located	locate	VERB
bracis-28399	62	21	at	at	ADP
bracis-28399	62	22	the	the	DET
bracis-28399	62	23	200th	200th	ADJ
bracis-28399	62	24	position	position	NOUN
bracis-28399	62	25	,	,	PUNCT
bracis-28399	62	26	were	be	AUX
bracis-28399	62	27	sourced	source	VERB
bracis-28399	62	28	exclusively	exclusively	ADV
bracis-28399	62	29	from	from	ADP
bracis-28399	62	30	the	the	DET
bracis-28399	62	31	epd	epd	PROPN
bracis-28399	62	32	database	database	NOUN
bracis-28399	63	1	[	[	X
bracis-28399	63	2	12	12	NUM
bracis-28399	63	3	]	]	PUNCT
bracis-28399	63	4	.	.	PUNCT
bracis-28399	64	1	the	the	DET
bracis-28399	64	2	dataset	dataset	NOUN
bracis-28399	64	3	includes	include	VERB
bracis-28399	64	4	arabidopsis	arabidopsis	NOUN
bracis-28399	64	5	tata	tata	NOUN
bracis-28399	64	6	and	and	CCONJ
bracis-28399	64	7	arabidopsis	arabidopsis	NOUN
bracis-28399	64	8	non	non	ADJ
bracis-28399	64	9	-	-	ADJ
bracis-28399	64	10	tata	tata	ADJ
bracis-28399	64	11	sequences	sequence	NOUN
bracis-28399	64	12	from	from	ADP
bracis-28399	64	13	a	a	DET
bracis-28399	64	14	plant	plant	NOUN
bracis-28399	64	15	species	specie	NOUN
bracis-28399	64	16	,	,	PUNCT
bracis-28399	64	17	as	as	ADV
bracis-28399	64	18	well	well	ADV
bracis-28399	64	19	as	as	ADP
bracis-28399	64	20	mouse	mouse	NOUN
bracis-28399	64	21	tata	tata	PROPN
bracis-28399	64	22	,	,	PUNCT
bracis-28399	64	23	mouse	mouse	PROPN
bracis-28399	64	24	non	non	PROPN
bracis-28399	64	25	-	-	NOUN
bracis-28399	64	26	tata	tata	ADJ
bracis-28399	64	27	,	,	PUNCT
bracis-28399	64	28	and	and	CCONJ
bracis-28399	64	29	human	human	ADJ
bracis-28399	64	30	non	non	ADJ
bracis-28399	64	31	-	-	ADJ
bracis-28399	64	32	tata	tata	ADJ
bracis-28399	64	33	sequences	sequence	NOUN
bracis-28399	64	34	from	from	ADP
bracis-28399	64	35	mammalian	mammalian	ADJ
bracis-28399	64	36	species	specie	NOUN
bracis-28399	64	37	.	.	PUNCT
bracis-28399	65	1	non	non	ADJ
bracis-28399	65	2	-	-	ADJ
bracis-28399	65	3	promoter	promoter	ADJ
bracis-28399	65	4	sequences	sequence	NOUN
bracis-28399	65	5	in	in	ADP
bracis-28399	65	6	these	these	DET
bracis-28399	65	7	datasets	dataset	NOUN
bracis-28399	65	8	are	be	AUX
bracis-28399	65	9	comprised	comprise	VERB
bracis-28399	65	10	of	of	ADP
bracis-28399	65	11	random	random	ADJ
bracis-28399	65	12	gene	gene	NOUN
bracis-28399	65	13	fragments	fragment	NOUN
bracis-28399	65	14	located	locate	VERB
bracis-28399	65	15	after	after	ADP
bracis-28399	65	16	the	the	DET
bracis-28399	65	17	first	first	ADJ
bracis-28399	65	18	exons	exon	NOUN
bracis-28399	65	19	.	.	PUNCT
bracis-28399	66	1	the	the	DET
bracis-28399	66	2	bacterial	bacterial	ADJ
bracis-28399	66	3	promoter	promoter	NOUN
bracis-28399	66	4	sequences	sequence	NOUN
bracis-28399	66	5	of	of	ADP
bracis-28399	66	6	bacillus	bacillus	NOUN
bracis-28399	66	7	subtilis	subtili	NOUN
bracis-28399	66	8	were	be	AUX
bracis-28399	66	9	obtained	obtain	VERB
bracis-28399	66	10	from	from	ADP
bracis-28399	66	11	dbtbs	dbtbs	PROPN
bracis-28399	66	12	[	[	X
bracis-28399	66	13	19	19	NUM
bracis-28399	66	14	]	]	PUNCT
bracis-28399	66	15	,	,	PUNCT
bracis-28399	66	16	while	while	SCONJ
bracis-28399	66	17	the	the	DET
bracis-28399	66	18	escherichia	escherichia	NOUN
bracis-28399	66	19	coli	coli	NOUN
bracis-28399	66	20	s70	s70	NOUN
bracis-28399	66	21	sequences	sequence	NOUN
bracis-28399	66	22	were	be	AUX
bracis-28399	66	23	acquired	acquire	VERB
bracis-28399	66	24	from	from	ADP
bracis-28399	66	25	regulondb	regulondb	NOUN
bracis-28399	67	1	[	[	X
bracis-28399	67	2	16	16	NUM
bracis-28399	67	3	]	]	PUNCT
bracis-28399	67	4	.	.	PUNCT
bracis-28399	68	1	these	these	DET
bracis-28399	68	2	sequences	sequence	NOUN
bracis-28399	68	3	,	,	PUNCT
bracis-28399	68	4	which	which	PRON
bracis-28399	68	5	comprise	comprise	VERB
bracis-28399	68	6	81bp	81bp	ADV
bracis-28399	68	7	,	,	PUNCT
bracis-28399	68	8	contain	contain	VERB
bracis-28399	68	9	the	the	DET
bracis-28399	68	10	transcriptional	transcriptional	NOUN
bracis-28399	68	11	start	start	NOUN
bracis-28399	68	12	site	site	NOUN
bracis-28399	68	13	(	(	PUNCT
bracis-28399	68	14	tss	tss	PROPN
bracis-28399	68	15	)	)	PUNCT
bracis-28399	68	16	at	at	ADP
bracis-28399	68	17	the	the	DET
bracis-28399	68	18	60th	60th	ADJ
bracis-28399	68	19	position	position	NOUN
bracis-28399	68	20	.	.	PUNCT
bracis-28399	69	1	conversely	conversely	ADV
bracis-28399	69	2	,	,	PUNCT
bracis-28399	69	3	the	the	DET
bracis-28399	69	4	non	non	ADJ
bracis-28399	69	5	-	-	ADJ
bracis-28399	69	6	promoter	promoter	ADJ
bracis-28399	69	7	sequences	sequence	NOUN
bracis-28399	69	8	for	for	ADP
bracis-28399	69	9	these	these	DET
bracis-28399	69	10	prokaryotic	prokaryotic	ADJ
bracis-28399	69	11	organisms	organism	NOUN
bracis-28399	69	12	include	include	VERB
bracis-28399	69	13	the	the	DET
bracis-28399	69	14	reverse	reverse	ADJ
bracis-28399	69	15	sequences	sequence	NOUN
bracis-28399	69	16	of	of	ADP
bracis-28399	69	17	random	random	ADJ
bracis-28399	69	18	fragments	fragment	NOUN
bracis-28399	69	19	extracted	extract	VERB
bracis-28399	69	20	from	from	ADP
bracis-28399	69	21	protein	protein	NOUN
bracis-28399	69	22	-	-	PUNCT
bracis-28399	69	23	coding	code	VERB
bracis-28399	69	24	genes	gene	NOUN
bracis-28399	69	25	.	.	PUNCT
bracis-28399	70	1	figure	figure	NOUN
bracis-28399	70	2	 	 	SPACE
bracis-28399	70	3	1	1	NUM
bracis-28399	70	4	shows	show	VERB
bracis-28399	70	5	the	the	DET
bracis-28399	70	6	number	number	NOUN
bracis-28399	70	7	of	of	ADP
bracis-28399	70	8	promoters	promoter	NOUN
bracis-28399	70	9	and	and	CCONJ
bracis-28399	70	10	non	non	NOUN
bracis-28399	70	11	-	-	NOUN
bracis-28399	70	12	promoters	promoter	NOUN
bracis-28399	70	13	in	in	ADP
bracis-28399	70	14	each	each	DET
bracis-28399	70	15	dataset	dataset	NOUN
bracis-28399	70	16	.	.	PUNCT
bracis-28399	71	1	notably	notably	ADV
bracis-28399	71	2	,	,	PUNCT
bracis-28399	71	3	all	all	DET
bracis-28399	71	4	datasets	dataset	NOUN
bracis-28399	71	5	have	have	VERB
bracis-28399	71	6	more	more	ADJ
bracis-28399	71	7	non	non	ADJ
bracis-28399	71	8	-	-	ADJ
bracis-28399	71	9	promoter	promoter	ADJ
bracis-28399	71	10	samples	sample	NOUN
bracis-28399	71	11	than	than	ADP
bracis-28399	71	12	promoter	promoter	NOUN
bracis-28399	71	13	samples	sample	NOUN
bracis-28399	71	14	.	.	PUNCT
bracis-28399	72	1	this	this	DET
bracis-28399	72	2	characteristic	characteristic	NOUN
bracis-28399	72	3	can	can	AUX
bracis-28399	72	4	potentially	potentially	ADV
bracis-28399	72	5	affect	affect	VERB
bracis-28399	72	6	the	the	DET
bracis-28399	72	7	model	model	NOUN
bracis-28399	72	8	learning	learning	NOUN
bracis-28399	72	9	process	process	NOUN
bracis-28399	72	10	as	as	SCONJ
bracis-28399	72	11	they	they	PRON
bracis-28399	72	12	tend	tend	VERB
bracis-28399	72	13	to	to	PART
bracis-28399	72	14	classify	classify	VERB
bracis-28399	72	15	the	the	DET
bracis-28399	72	16	data	datum	NOUN
bracis-28399	72	17	into	into	ADP
bracis-28399	72	18	the	the	DET
bracis-28399	72	19	majority	majority	NOUN
bracis-28399	72	20	class	class	NOUN
bracis-28399	72	21	 	 	SPACE
bracis-28399	73	1	[	[	X
bracis-28399	73	2	22	22	NUM
bracis-28399	73	3	]	]	PUNCT
bracis-28399	73	4	.	.	PUNCT
bracis-28399	74	1	besides	besides	SCONJ
bracis-28399	74	2	,	,	PUNCT
bracis-28399	74	3	the	the	DET
bracis-28399	74	4	prokaryotic	prokaryotic	ADJ
bracis-28399	74	5	datasets	dataset	NOUN
bracis-28399	74	6	have	have	VERB
bracis-28399	74	7	fewer	few	ADJ
bracis-28399	74	8	samples	sample	NOUN
bracis-28399	74	9	compared	compare	VERB
bracis-28399	74	10	to	to	ADP
bracis-28399	74	11	eukaryotic	eukaryotic	ADJ
bracis-28399	74	12	datasets	dataset	NOUN
bracis-28399	74	13	.	.	PUNCT
bracis-28399	75	1	fig	fig	NOUN
bracis-28399	75	2	.	.	PUNCT
bracis-28399	76	1	1	1	X
bracis-28399	76	2	.	.	PUNCT
bracis-28399	76	3	the	the	DET
bracis-28399	76	4	number	number	NOUN
bracis-28399	76	5	of	of	ADP
bracis-28399	76	6	promoters	promoter	NOUN
bracis-28399	76	7	samples	sample	NOUN
bracis-28399	76	8	and	and	CCONJ
bracis-28399	76	9	non	non	ADJ
bracis-28399	76	10	-	-	ADJ
bracis-28399	76	11	promoters	promoters	ADJ
bracis-28399	76	12	samples	sample	NOUN
bracis-28399	76	13	present	present	ADJ
bracis-28399	76	14	in	in	ADP
bracis-28399	76	15	each	each	DET
bracis-28399	76	16	benchmark	benchmark	NOUN
bracis-28399	76	17	dataset	dataset	NOUN
bracis-28399	76	18	.	.	PUNCT
bracis-28399	77	1	full	full	ADJ
bracis-28399	77	2	size	size	NOUN
bracis-28399	77	3	image	image	NOUN
bracis-28399	77	4	2.2	2.2	NUM
bracis-28399	77	5	feature	feature	NOUN
bracis-28399	77	6	representation	representation	NOUN
bracis-28399	77	7	adenine	adenine	NOUN
bracis-28399	77	8	(	(	PUNCT
bracis-28399	77	9	a	a	X
bracis-28399	77	10	)	)	PUNCT
bracis-28399	77	11	,	,	PUNCT
bracis-28399	77	12	cytosine	cytosine	NOUN
bracis-28399	77	13	(	(	PUNCT
bracis-28399	77	14	c	c	NOUN
bracis-28399	77	15	)	)	PUNCT
bracis-28399	77	16	,	,	PUNCT
bracis-28399	77	17	guanine	guanine	NOUN
bracis-28399	77	18	(	(	PUNCT
bracis-28399	77	19	g	g	NOUN
bracis-28399	77	20	)	)	PUNCT
bracis-28399	77	21	,	,	PUNCT
bracis-28399	77	22	and	and	CCONJ
bracis-28399	77	23	thymine	thymine	PROPN
bracis-28399	77	24	(	(	PUNCT
bracis-28399	77	25	t	t	PROPN
bracis-28399	77	26	)	)	PUNCT
bracis-28399	77	27	are	be	AUX
bracis-28399	77	28	the	the	DET
bracis-28399	77	29	four	four	NUM
bracis-28399	77	30	nucleotides	nucleotide	NOUN
bracis-28399	77	31	that	that	PRON
bracis-28399	77	32	comprise	comprise	VERB
bracis-28399	77	33	the	the	DET
bracis-28399	77	34	alphabet	alphabet	NOUN
bracis-28399	77	35	\(v=\{a	\(v=\{a	PROPN
bracis-28399	77	36	,	,	PUNCT
bracis-28399	77	37	c	c	X
bracis-28399	77	38	,	,	PUNCT
bracis-28399	77	39	g	g	NOUN
bracis-28399	77	40	,	,	PUNCT
bracis-28399	77	41	t\}\	t\}\	NOUN
bracis-28399	77	42	)	)	PUNCT
bracis-28399	77	43	forming	form	VERB
bracis-28399	77	44	the	the	DET
bracis-28399	77	45	basis	basis	NOUN
bracis-28399	77	46	of	of	ADP
bracis-28399	77	47	dna	dna	PROPN
bracis-28399	77	48	.	.	PUNCT
bracis-28399	78	1	a	a	DET
bracis-28399	78	2	dna	dna	PROPN
bracis-28399	78	3	sample	sample	NOUN
bracis-28399	78	4	of	of	ADP
bracis-28399	78	5	length	length	NOUN
bracis-28399	78	6	\(l_{s	\(l_{s	NOUN
bracis-28399	78	7	}	}	PUNCT
bracis-28399	78	8	\in	\in	ADJ
bracis-28399	78	9	\mathbb	\mathbb	PROPN
bracis-28399	78	10	{	{	PUNCT
bracis-28399	78	11	n}^{*}\	n}^{*}\	NOUN
bracis-28399	78	12	)	)	PUNCT
bracis-28399	78	13	base	base	NOUN
bracis-28399	78	14	pairs	pair	NOUN
bracis-28399	78	15	is	be	AUX
bracis-28399	78	16	represented	represent	VERB
bracis-28399	78	17	by	by	ADP
bracis-28399	78	18	\({s	\({s	PROPN
bracis-28399	78	19	}	}	PUNCT
bracis-28399	78	20	\in	\in	ADJ
bracis-28399	78	21	v^{l_{s}}\	v^{l_{s}}\	NOUN
bracis-28399	78	22	)	)	PUNCT
bracis-28399	78	23	,	,	PUNCT
bracis-28399	78	24	which	which	PRON
bracis-28399	78	25	can	can	AUX
bracis-28399	78	26	be	be	AUX
bracis-28399	78	27	written	write	VERB
bracis-28399	78	28	as	as	ADP
bracis-28399	78	29	a	a	DET
bracis-28399	78	30	sequence	sequence	NOUN
bracis-28399	78	31	\({s	\({s	PROPN
bracis-28399	78	32	}	}	PUNCT
bracis-28399	78	33	=	=	SYM
bracis-28399	78	34	s_{1	s_{1	PROPN
bracis-28399	78	35	}	}	PUNCT
bracis-28399	78	36	...	...	PUNCT
bracis-28399	79	1	s_{i	s_{i	NOUN
bracis-28399	79	2	}	}	PUNCT
bracis-28399	79	3	...	...	PUNCT
bracis-28399	80	1	s_{l_{{s}}}\	s_{l_{{s}}}\	PROPN
bracis-28399	80	2	)	)	PUNCT
bracis-28399	80	3	,	,	PUNCT
bracis-28399	80	4	where	where	SCONJ
bracis-28399	80	5	\(s_{i}\	\(s_{i}\	PUNCT
bracis-28399	80	6	)	)	PUNCT
bracis-28399	80	7	is	be	AUX
bracis-28399	80	8	the	the	DET
bracis-28399	80	9	i	i	PROPN
bracis-28399	80	10	-	-	PUNCT
bracis-28399	80	11	th	th	X
bracis-28399	80	12	nucleotide	nucleotide	NOUN
bracis-28399	80	13	of	of	ADP
bracis-28399	80	14	the	the	DET
bracis-28399	80	15	sequence	sequence	NOUN
bracis-28399	80	16	s.	s.	PROPN
bracis-28399	80	17	to	to	PART
bracis-28399	80	18	convert	convert	VERB
bracis-28399	80	19	the	the	DET
bracis-28399	80	20	dna	dna	PROPN
bracis-28399	80	21	sequence	sequence	NOUN
bracis-28399	80	22	into	into	ADP
bracis-28399	80	23	a	a	DET
bracis-28399	80	24	numeric	numeric	ADJ
bracis-28399	80	25	format	format	NOUN
bracis-28399	80	26	,	,	PUNCT
bracis-28399	80	27	we	we	PRON
bracis-28399	80	28	can	can	AUX
bracis-28399	80	29	use	use	VERB
bracis-28399	80	30	the	the	DET
bracis-28399	80	31	physicochemical	physicochemical	ADJ
bracis-28399	80	32	properties	property	NOUN
bracis-28399	80	33	of	of	ADP
bracis-28399	80	34	dinucleotides	dinucleotide	NOUN
bracis-28399	80	35	or	or	CCONJ
bracis-28399	80	36	trinucleotides	trinucleotide	NOUN
bracis-28399	80	37	.	.	PUNCT
bracis-28399	81	1	a	a	DET
bracis-28399	81	2	dinucleotide	dinucleotide	NOUN
bracis-28399	81	3	represents	represent	VERB
bracis-28399	81	4	a	a	DET
bracis-28399	81	5	pair	pair	NOUN
bracis-28399	81	6	of	of	ADP
bracis-28399	81	7	adjacent	adjacent	ADJ
bracis-28399	81	8	nucleotides	nucleotide	NOUN
bracis-28399	81	9	in	in	ADP
bracis-28399	81	10	a	a	DET
bracis-28399	81	11	dna	dna	NOUN
bracis-28399	81	12	sequence	sequence	NOUN
bracis-28399	81	13	,	,	PUNCT
bracis-28399	81	14	while	while	SCONJ
bracis-28399	81	15	a	a	DET
bracis-28399	81	16	trinucleotide	trinucleotide	NOUN
bracis-28399	81	17	represents	represent	VERB
bracis-28399	81	18	three	three	NUM
bracis-28399	81	19	adjacent	adjacent	ADJ
bracis-28399	81	20	nucleotides	nucleotide	NOUN
bracis-28399	81	21	.	.	PUNCT
bracis-28399	82	1	these	these	DET
bracis-28399	82	2	properties	property	NOUN
bracis-28399	82	3	capture	capture	VERB
bracis-28399	82	4	the	the	DET
bracis-28399	82	5	physicochemical	physicochemical	ADJ
bracis-28399	82	6	characteristics	characteristic	NOUN
bracis-28399	82	7	of	of	ADP
bracis-28399	82	8	nucleotides	nucleotide	NOUN
bracis-28399	82	9	and	and	CCONJ
bracis-28399	82	10	the	the	DET
bracis-28399	82	11	structural	structural	ADJ
bracis-28399	82	12	features	feature	NOUN
bracis-28399	82	13	of	of	ADP
bracis-28399	82	14	dna	dna	PROPN
bracis-28399	82	15	 	 	SPACE
bracis-28399	83	1	[	[	X
bracis-28399	83	2	7	7	NUM
bracis-28399	83	3	]	]	PUNCT
bracis-28399	83	4	.	.	PUNCT
bracis-28399	84	1	for	for	ADP
bracis-28399	84	2	example	example	NOUN
bracis-28399	84	3	,	,	PUNCT
bracis-28399	84	4	the	the	DET
bracis-28399	84	5	properties	property	NOUN
bracis-28399	84	6	may	may	AUX
bracis-28399	84	7	include	include	VERB
bracis-28399	84	8	measures	measure	NOUN
bracis-28399	84	9	of	of	ADP
bracis-28399	84	10	hydrogen	hydrogen	NOUN
bracis-28399	84	11	bond	bond	NOUN
bracis-28399	84	12	formation	formation	NOUN
bracis-28399	84	13	,	,	PUNCT
bracis-28399	84	14	base	base	NOUN
bracis-28399	84	15	stacking	stacking	NOUN
bracis-28399	84	16	,	,	PUNCT
bracis-28399	84	17	base	base	NOUN
bracis-28399	84	18	pairing	pairing	NOUN
bracis-28399	84	19	,	,	PUNCT
bracis-28399	84	20	or	or	CCONJ
bracis-28399	84	21	flexibility	flexibility	NOUN
bracis-28399	84	22	of	of	ADP
bracis-28399	84	23	the	the	DET
bracis-28399	84	24	dna	dna	NOUN
bracis-28399	84	25	helix	helix	NOUN
bracis-28399	84	26	.	.	PUNCT
bracis-28399	85	1	k	k	X
bracis-28399	85	2	-	-	PUNCT
bracis-28399	85	3	mers	mer	NOUN
bracis-28399	85	4	are	be	AUX
bracis-28399	85	5	substrings	substring	NOUN
bracis-28399	85	6	of	of	ADP
bracis-28399	85	7	length	length	NOUN
bracis-28399	85	8	k	k	PROPN
bracis-28399	85	9	that	that	PRON
bracis-28399	85	10	are	be	AUX
bracis-28399	85	11	extracted	extract	VERB
bracis-28399	85	12	from	from	ADP
bracis-28399	85	13	a	a	DET
bracis-28399	85	14	longer	long	ADJ
bracis-28399	85	15	dna	dna	NOUN
bracis-28399	85	16	or	or	CCONJ
bracis-28399	85	17	protein	protein	NOUN
bracis-28399	85	18	sequence	sequence	NOUN
bracis-28399	85	19	.	.	PUNCT
bracis-28399	86	1	this	this	DET
bracis-28399	86	2	bioinformatics	bioinformatics	NOUN
bracis-28399	86	3	concept	concept	NOUN
bracis-28399	86	4	can	can	AUX
bracis-28399	86	5	be	be	AUX
bracis-28399	86	6	used	use	VERB
bracis-28399	86	7	in	in	ADP
bracis-28399	86	8	sequence	sequence	NOUN
bracis-28399	86	9	analysis	analysis	NOUN
bracis-28399	86	10	to	to	PART
bracis-28399	86	11	identify	identify	VERB
bracis-28399	86	12	motifs	motif	NOUN
bracis-28399	86	13	,	,	PUNCT
bracis-28399	86	14	patterns	pattern	NOUN
bracis-28399	86	15	,	,	PUNCT
bracis-28399	86	16	or	or	CCONJ
bracis-28399	86	17	features	feature	VERB
bracis-28399	86	18	characteristic	characteristic	ADJ
bracis-28399	86	19	of	of	ADP
bracis-28399	86	20	a	a	DET
bracis-28399	86	21	specific	specific	ADJ
bracis-28399	86	22	biological	biological	ADJ
bracis-28399	86	23	function	function	NOUN
bracis-28399	86	24	.	.	PUNCT
bracis-28399	87	1	considering	consider	VERB
bracis-28399	87	2	the	the	DET
bracis-28399	87	3	nucleotide	nucleotide	NOUN
bracis-28399	87	4	alphabet	alphabet	PROPN
bracis-28399	87	5	v	v	ADP
bracis-28399	87	6	,	,	PUNCT
bracis-28399	87	7	there	there	PRON
bracis-28399	87	8	is	be	VERB
bracis-28399	87	9	\(|v|^{k}\	\(|v|^{k}\	ADJ
bracis-28399	87	10	)	)	PUNCT
bracis-28399	87	11	possible	possible	ADJ
bracis-28399	87	12	mers	mer	NOUN
bracis-28399	87	13	with	with	ADP
bracis-28399	87	14	length	length	NOUN
bracis-28399	87	15	k.	k.	PROPN
bracis-28399	87	16	as	as	SCONJ
bracis-28399	87	17	the	the	DET
bracis-28399	87	18	name	name	NOUN
bracis-28399	87	19	suggests	suggest	VERB
bracis-28399	87	20	,	,	PUNCT
bracis-28399	87	21	dinucleotides	dinucleotide	NOUN
bracis-28399	87	22	are	be	AUX
bracis-28399	87	23	two	two	NUM
bracis-28399	87	24	adjacent	adjacent	ADJ
bracis-28399	87	25	nucleotides	nucleotide	NOUN
bracis-28399	87	26	that	that	PRON
bracis-28399	87	27	occur	occur	VERB
bracis-28399	87	28	in	in	ADP
bracis-28399	87	29	a	a	DET
bracis-28399	87	30	dna	dna	NOUN
bracis-28399	87	31	sequence	sequence	NOUN
bracis-28399	87	32	.	.	PUNCT
bracis-28399	88	1	it	it	PRON
bracis-28399	88	2	can	can	AUX
bracis-28399	88	3	be	be	AUX
bracis-28399	88	4	seen	see	VERB
bracis-28399	88	5	as	as	ADP
bracis-28399	88	6	a	a	DET
bracis-28399	88	7	special	special	ADJ
bracis-28399	88	8	case	case	NOUN
bracis-28399	88	9	of	of	ADP
bracis-28399	88	10	k	k	NOUN
bracis-28399	88	11	-	-	PUNCT
bracis-28399	88	12	mers	mer	NOUN
bracis-28399	88	13	with	with	ADP
bracis-28399	88	14	\(k=2\	\(k=2\	NOUN
bracis-28399	88	15	)	)	PUNCT
bracis-28399	88	16	.	.	PUNCT
bracis-28399	89	1	there	there	PRON
bracis-28399	89	2	are	be	VERB
bracis-28399	89	3	\(4^{2	\(4^{2	NOUN
bracis-28399	89	4	}	}	PUNCT
bracis-28399	89	5	=	=	SYM
bracis-28399	89	6	16\	16\	NUM
bracis-28399	89	7	)	)	PUNCT
bracis-28399	89	8	possible	possible	ADJ
bracis-28399	89	9	dinucleotides	dinucleotide	NOUN
bracis-28399	89	10	,	,	PUNCT
bracis-28399	89	11	such	such	ADJ
bracis-28399	89	12	as	as	ADP
bracis-28399	89	13	“	"	PUNCT
bracis-28399	89	14	at	at	ADP
bracis-28399	89	15	”	"	PUNCT
bracis-28399	89	16	,	,	PUNCT
bracis-28399	89	17	“	"	PUNCT
bracis-28399	89	18	cg	cg	NOUN
bracis-28399	89	19	”	"	PUNCT
bracis-28399	89	20	,	,	PUNCT
bracis-28399	89	21	“	"	PUNCT
bracis-28399	89	22	ta	ta	X
bracis-28399	89	23	”	"	PUNCT
bracis-28399	89	24	,	,	PUNCT
bracis-28399	89	25	etc	etc	X
bracis-28399	89	26	.	.	X
bracis-28399	89	27	while	while	SCONJ
bracis-28399	89	28	trinucleotides	trinucleotide	NOUN
bracis-28399	89	29	are	be	AUX
bracis-28399	89	30	three	three	NUM
bracis-28399	89	31	adjacent	adjacent	ADJ
bracis-28399	89	32	nucleotides	nucleotide	NOUN
bracis-28399	89	33	that	that	PRON
bracis-28399	89	34	occur	occur	VERB
bracis-28399	89	35	in	in	ADP
bracis-28399	89	36	a	a	DET
bracis-28399	89	37	dna	dna	NOUN
bracis-28399	89	38	sequence	sequence	NOUN
bracis-28399	89	39	.	.	PUNCT
bracis-28399	90	1	it	it	PRON
bracis-28399	90	2	is	be	AUX
bracis-28399	90	3	a	a	DET
bracis-28399	90	4	special	special	ADJ
bracis-28399	90	5	case	case	NOUN
bracis-28399	90	6	of	of	ADP
bracis-28399	90	7	k	k	NOUN
bracis-28399	90	8	-	-	PUNCT
bracis-28399	90	9	mers	mer	NOUN
bracis-28399	90	10	with	with	ADP
bracis-28399	90	11	\(k=3\	\(k=3\	NOUN
bracis-28399	90	12	)	)	PUNCT
bracis-28399	90	13	.	.	PUNCT
bracis-28399	91	1	there	there	PRON
bracis-28399	91	2	are	be	VERB
bracis-28399	91	3	\(4^{3	\(4^{3	NOUN
bracis-28399	91	4	}	}	PUNCT
bracis-28399	91	5	=	=	SYM
bracis-28399	91	6	64\	64\	ADJ
bracis-28399	91	7	)	)	PUNCT
bracis-28399	91	8	possible	possible	ADJ
bracis-28399	91	9	trinucleotides	trinucleotide	NOUN
bracis-28399	91	10	,	,	PUNCT
bracis-28399	91	11	such	such	ADJ
bracis-28399	91	12	as	as	ADP
bracis-28399	91	13	“	"	PUNCT
bracis-28399	91	14	atg	atg	PROPN
bracis-28399	91	15	”	"	PUNCT
bracis-28399	91	16	,	,	PUNCT
bracis-28399	91	17	“	"	PUNCT
bracis-28399	91	18	cgt	cgt	PROPN
bracis-28399	91	19	”	"	PUNCT
bracis-28399	91	20	,	,	PUNCT
bracis-28399	91	21	“	"	PUNCT
bracis-28399	91	22	taa	taa	X
bracis-28399	91	23	”	"	PUNCT
bracis-28399	91	24	,	,	PUNCT
bracis-28399	91	25	etc	etc	X
bracis-28399	91	26	.	.	X
bracis-28399	92	1	there	there	PRON
bracis-28399	92	2	are	be	VERB
bracis-28399	92	3	several	several	ADJ
bracis-28399	92	4	physicochemical	physicochemical	ADJ
bracis-28399	92	5	properties	property	NOUN
bracis-28399	92	6	in	in	ADP
bracis-28399	92	7	the	the	DET
bracis-28399	92	8	literature	literature	NOUN
bracis-28399	92	9	.	.	PUNCT
bracis-28399	93	1	the	the	DET
bracis-28399	93	2	work	work	NOUN
bracis-28399	93	3	of	of	ADP
bracis-28399	93	4	[	[	X
bracis-28399	93	5	7	7	NUM
bracis-28399	93	6	]	]	PUNCT
bracis-28399	93	7	used	use	VERB
bracis-28399	93	8	38	38	NUM
bracis-28399	93	9	properties	property	NOUN
bracis-28399	93	10	for	for	ADP
bracis-28399	93	11	dinucleotides	dinucleotide	NOUN
bracis-28399	93	12	and	and	CCONJ
bracis-28399	93	13	12	12	NUM
bracis-28399	93	14	for	for	ADP
bracis-28399	93	15	trinucleotides	trinucleotide	NOUN
bracis-28399	93	16	,	,	PUNCT
bracis-28399	93	17	making	make	VERB
bracis-28399	93	18	the	the	DET
bracis-28399	93	19	mapping	mapping	NOUN
bracis-28399	93	20	values	value	NOUN
bracis-28399	93	21	available	available	ADJ
bracis-28399	93	22	for	for	ADP
bracis-28399	93	23	each	each	PRON
bracis-28399	93	24	in	in	ADP
bracis-28399	93	25	the	the	DET
bracis-28399	93	26	supplementary	supplementary	ADJ
bracis-28399	93	27	data	data	NOUN
bracis-28399	93	28	section	section	NOUN
bracis-28399	93	29	.	.	PUNCT
bracis-28399	94	1	we	we	PRON
bracis-28399	94	2	used	use	VERB
bracis-28399	94	3	these	these	DET
bracis-28399	94	4	data	datum	NOUN
bracis-28399	94	5	to	to	PART
bracis-28399	94	6	convert	convert	VERB
bracis-28399	94	7	the	the	DET
bracis-28399	94	8	dataset	dataset	NOUN
bracis-28399	94	9	sequences	sequence	NOUN
bracis-28399	94	10	and	and	CCONJ
bracis-28399	94	11	create	create	VERB
bracis-28399	94	12	the	the	DET
bracis-28399	94	13	input	input	NOUN
bracis-28399	94	14	features	feature	NOUN
bracis-28399	94	15	for	for	ADP
bracis-28399	94	16	our	our	PRON
bracis-28399	94	17	tested	test	VERB
bracis-28399	94	18	models	model	NOUN
bracis-28399	94	19	.	.	PUNCT
bracis-28399	95	1	in	in	ADP
bracis-28399	95	2	table	table	NOUN
bracis-28399	95	3	 	 	SPACE
bracis-28399	95	4	1	1	NUM
bracis-28399	95	5	,	,	PUNCT
bracis-28399	95	6	we	we	PRON
bracis-28399	95	7	show	show	VERB
bracis-28399	95	8	the	the	DET
bracis-28399	95	9	names	name	NOUN
bracis-28399	95	10	of	of	ADP
bracis-28399	95	11	all	all	PRON
bracis-28399	95	12	of	of	ADP
bracis-28399	95	13	these	these	DET
bracis-28399	95	14	50	50	NUM
bracis-28399	95	15	properties	property	NOUN
bracis-28399	95	16	that	that	PRON
bracis-28399	95	17	we	we	PRON
bracis-28399	95	18	used	use	VERB
bracis-28399	95	19	.	.	PUNCT
bracis-28399	96	1	there	there	PRON
bracis-28399	96	2	is	be	VERB
bracis-28399	96	3	one	one	NUM
bracis-28399	96	4	column	column	NOUN
bracis-28399	96	5	for	for	ADP
bracis-28399	96	6	the	the	DET
bracis-28399	96	7	dinucleotide	dinucleotide	NOUN
bracis-28399	96	8	names	name	NOUN
bracis-28399	96	9	and	and	CCONJ
bracis-28399	96	10	one	one	NUM
bracis-28399	96	11	for	for	ADP
bracis-28399	96	12	the	the	DET
bracis-28399	96	13	trinucleotide	trinucleotide	ADJ
bracis-28399	96	14	names	name	NOUN
bracis-28399	96	15	.	.	PUNCT
bracis-28399	97	1	table	table	NOUN
bracis-28399	97	2	1	1	NUM
bracis-28399	97	3	.	.	X
bracis-28399	97	4	list	list	NOUN
bracis-28399	97	5	of	of	ADP
bracis-28399	97	6	all	all	DET
bracis-28399	97	7	physicochemical	physicochemical	ADJ
bracis-28399	97	8	properties	property	NOUN
bracis-28399	97	9	names	name	NOUN
bracis-28399	97	10	.	.	PUNCT
bracis-28399	98	1	there	there	PRON
bracis-28399	98	2	are	be	VERB
bracis-28399	98	3	38	38	NUM
bracis-28399	98	4	dinucleotides	dinucleotide	NOUN
bracis-28399	98	5	and	and	CCONJ
bracis-28399	98	6	12	12	NUM
bracis-28399	98	7	trinucleotides.full	trinucleotides.full	NUM
bracis-28399	98	8	size	size	NOUN
bracis-28399	98	9	table	table	NOUN
bracis-28399	98	10	to	to	PART
bracis-28399	98	11	convert	convert	VERB
bracis-28399	98	12	the	the	DET
bracis-28399	98	13	dna	dna	PROPN
bracis-28399	98	14	sequence	sequence	NOUN
bracis-28399	98	15	into	into	ADP
bracis-28399	98	16	dinucleotide	dinucleotide	NOUN
bracis-28399	98	17	or	or	CCONJ
bracis-28399	98	18	trinucleotide	trinucleotide	VERB
bracis-28399	98	19	physicochemical	physicochemical	ADJ
bracis-28399	98	20	properties	property	NOUN
bracis-28399	98	21	,	,	PUNCT
bracis-28399	98	22	we	we	PRON
bracis-28399	98	23	can	can	AUX
bracis-28399	98	24	use	use	VERB
bracis-28399	98	25	a	a	DET
bracis-28399	98	26	function	function	NOUN
bracis-28399	98	27	that	that	PRON
bracis-28399	98	28	maps	map	VERB
bracis-28399	98	29	each	each	DET
bracis-28399	98	30	dinucleotide	dinucleotide	NOUN
bracis-28399	98	31	or	or	CCONJ
bracis-28399	98	32	trinucleotide	trinucleotide	VERB
bracis-28399	98	33	to	to	ADP
bracis-28399	98	34	a	a	DET
bracis-28399	98	35	corresponding	corresponding	ADJ
bracis-28399	98	36	numerical	numerical	ADJ
bracis-28399	98	37	value	value	NOUN
bracis-28399	98	38	based	base	VERB
bracis-28399	98	39	on	on	ADP
bracis-28399	98	40	the	the	DET
bracis-28399	98	41	selected	select	VERB
bracis-28399	98	42	physicochemical	physicochemical	ADJ
bracis-28399	98	43	property	property	NOUN
bracis-28399	98	44	.	.	PUNCT
bracis-28399	99	1	this	this	DET
bracis-28399	99	2	mapping	mapping	NOUN
bracis-28399	99	3	function	function	NOUN
bracis-28399	99	4	can	can	AUX
bracis-28399	99	5	be	be	AUX
bracis-28399	99	6	represented	represent	VERB
bracis-28399	99	7	as	as	ADP
bracis-28399	99	8	\(f	\(f	NOUN
bracis-28399	99	9	:	:	PUNCT
bracis-28399	99	10	v^{k	v^{k	NOUN
bracis-28399	99	11	}	}	PUNCT
bracis-28399	100	1	\rightarrow	\rightarrow	PROPN
bracis-28399	100	2	\mathbb	\mathbb	PROPN
bracis-28399	100	3	{	{	PUNCT
bracis-28399	100	4	r}\	r}\	NUM
bracis-28399	100	5	)	)	PUNCT
bracis-28399	100	6	.	.	PUNCT
bracis-28399	101	1	a	a	DET
bracis-28399	101	2	sequence	sequence	NOUN
bracis-28399	101	3	s	s	VERB
bracis-28399	101	4	with	with	ADP
bracis-28399	101	5	\(l_{s}\	\(l_{s}\	NOUN
bracis-28399	101	6	)	)	PUNCT
bracis-28399	101	7	nucleotides	nucleotide	NOUN
bracis-28399	101	8	is	be	AUX
bracis-28399	101	9	converted	convert	VERB
bracis-28399	101	10	to	to	ADP
bracis-28399	101	11	a	a	DET
bracis-28399	101	12	sequence	sequence	NOUN
bracis-28399	101	13	of	of	ADP
bracis-28399	101	14	\(l_{s}-k+1\	\(l_{s}-k+1\	PROPN
bracis-28399	101	15	)	)	PUNCT
bracis-28399	101	16	property	property	NOUN
bracis-28399	101	17	values	value	NOUN
bracis-28399	101	18	.	.	PUNCT
bracis-28399	102	1	so	so	ADV
bracis-28399	102	2	,	,	PUNCT
bracis-28399	102	3	\(f_{{d}_{m}}(s	\(f_{{d}_{m}}(s	NOUN
bracis-28399	102	4	)	)	PUNCT
bracis-28399	102	5	\rightarrow	\rightarrow	PROPN
bracis-28399	102	6	\mathbb	\mathbb	ADV
bracis-28399	102	7	{	{	PUNCT
bracis-28399	102	8	r}^{l_{s}-1}\	r}^{l_{s}-1}\	VERB
bracis-28399	102	9	)	)	PUNCT
bracis-28399	102	10	is	be	AUX
bracis-28399	102	11	the	the	DET
bracis-28399	102	12	function	function	NOUN
bracis-28399	102	13	that	that	PRON
bracis-28399	102	14	maps	map	VERB
bracis-28399	102	15	each	each	DET
bracis-28399	102	16	dinucleotide	dinucleotide	NOUN
bracis-28399	102	17	to	to	ADP
bracis-28399	102	18	its	its	PRON
bracis-28399	102	19	related	relate	VERB
bracis-28399	102	20	physicochemical	physicochemical	ADJ
bracis-28399	102	21	property	property	NOUN
bracis-28399	102	22	m	m	PROPN
bracis-28399	102	23	,	,	PUNCT
bracis-28399	102	24	where	where	SCONJ
bracis-28399	102	25	\(1	\(1	PROPN
bracis-28399	102	26	\le	\le	PROPN
bracis-28399	102	27	m	m	VERB
bracis-28399	102	28	\le	\le	PROPN
bracis-28399	102	29	38\	38\	NOUN
bracis-28399	102	30	)	)	PUNCT
bracis-28399	102	31	.	.	PUNCT
bracis-28399	103	1	while	while	SCONJ
bracis-28399	103	2	\(f_{{t}_{n}}(s	\(f_{{t}_{n}}(s	NOUN
bracis-28399	103	3	)	)	PUNCT
bracis-28399	104	1	\rightarrow	\rightarrow	PROPN
bracis-28399	104	2	\mathbb	\mathbb	ADV
bracis-28399	104	3	{	{	PUNCT
bracis-28399	104	4	r}^{l_{s}-2}\	r}^{l_{s}-2}\	X
bracis-28399	104	5	)	)	PUNCT
bracis-28399	104	6	define	define	VERB
bracis-28399	104	7	a	a	DET
bracis-28399	104	8	similar	similar	ADJ
bracis-28399	104	9	mapping	mapping	NOUN
bracis-28399	104	10	function	function	NOUN
bracis-28399	104	11	to	to	PART
bracis-28399	104	12	convert	convert	VERB
bracis-28399	104	13	trinucleotides	trinucleotide	NOUN
bracis-28399	104	14	into	into	ADP
bracis-28399	104	15	the	the	DET
bracis-28399	104	16	m	m	PROPN
bracis-28399	104	17	-	-	PUNCT
bracis-28399	104	18	th	th	VERB
bracis-28399	104	19	physicochemical	physicochemical	ADJ
bracis-28399	104	20	property	property	NOUN
bracis-28399	104	21	,	,	PUNCT
bracis-28399	104	22	where	where	SCONJ
bracis-28399	104	23	\(1	\(1	PROPN
bracis-28399	104	24	\le	\le	PROPN
bracis-28399	104	25	n	n	PROPN
bracis-28399	104	26	\le	\le	PROPN
bracis-28399	104	27	12\	12\	NUM
bracis-28399	104	28	)	)	PUNCT
bracis-28399	104	29	.	.	PUNCT
bracis-28399	105	1	using	use	VERB
bracis-28399	105	2	a	a	DET
bracis-28399	105	3	sliding	slide	VERB
bracis-28399	105	4	window	window	NOUN
bracis-28399	105	5	strategy	strategy	NOUN
bracis-28399	105	6	,	,	PUNCT
bracis-28399	105	7	with	with	ADP
bracis-28399	105	8	length	length	NOUN
bracis-28399	105	9	2	2	NUM
bracis-28399	105	10	bp	bp	NOUN
bracis-28399	105	11	for	for	ADP
bracis-28399	105	12	dinucleotides	dinucleotide	NOUN
bracis-28399	105	13	and	and	CCONJ
bracis-28399	105	14	3	3	NUM
bracis-28399	105	15	bp	bp	NOUN
bracis-28399	105	16	for	for	ADP
bracis-28399	105	17	trinucleotides	trinucleotide	NOUN
bracis-28399	105	18	,	,	PUNCT
bracis-28399	105	19	and	and	CCONJ
bracis-28399	105	20	a	a	DET
bracis-28399	105	21	step	step	NOUN
bracis-28399	105	22	size	size	NOUN
bracis-28399	105	23	of	of	ADP
bracis-28399	105	24	1	1	NUM
bracis-28399	105	25	bp	bp	NOUN
bracis-28399	105	26	,	,	PUNCT
bracis-28399	105	27	we	we	PRON
bracis-28399	105	28	apply	apply	VERB
bracis-28399	105	29	the	the	DET
bracis-28399	105	30	corresponding	correspond	VERB
bracis-28399	105	31	mapping	mapping	NOUN
bracis-28399	105	32	function	function	NOUN
bracis-28399	105	33	to	to	PART
bracis-28399	105	34	get	get	VERB
bracis-28399	105	35	all	all	DET
bracis-28399	105	36	physicochemical	physicochemical	ADJ
bracis-28399	105	37	property	property	NOUN
bracis-28399	105	38	numeric	numeric	ADJ
bracis-28399	105	39	values	value	NOUN
bracis-28399	105	40	and	and	CCONJ
bracis-28399	105	41	create	create	VERB
bracis-28399	105	42	the	the	DET
bracis-28399	105	43	feature	feature	NOUN
bracis-28399	105	44	vectors	vector	NOUN
bracis-28399	105	45	that	that	PRON
bracis-28399	105	46	we	we	PRON
bracis-28399	105	47	use	use	VERB
bracis-28399	105	48	in	in	ADP
bracis-28399	105	49	this	this	DET
bracis-28399	105	50	work	work	NOUN
bracis-28399	105	51	to	to	PART
bracis-28399	105	52	train	train	VERB
bracis-28399	105	53	machine	machine	NOUN
bracis-28399	105	54	learning	learning	NOUN
bracis-28399	105	55	models	model	NOUN
bracis-28399	105	56	.	.	PUNCT
bracis-28399	106	1	figure	figure	NOUN
bracis-28399	106	2	 	 	SPACE
bracis-28399	106	3	2	2	NUM
bracis-28399	106	4	shows	show	VERB
bracis-28399	106	5	an	an	DET
bracis-28399	106	6	example	example	NOUN
bracis-28399	106	7	of	of	ADP
bracis-28399	106	8	converting	convert	VERB
bracis-28399	106	9	a	a	DET
bracis-28399	106	10	nucleotide	nucleotide	ADJ
bracis-28399	106	11	sequence	sequence	NOUN
bracis-28399	106	12	of	of	ADP
bracis-28399	106	13	length	length	NOUN
bracis-28399	106	14	8	8	NUM
bracis-28399	106	15	bp	bp	NOUN
bracis-28399	106	16	into	into	ADP
bracis-28399	106	17	two	two	NUM
bracis-28399	106	18	numeric	numeric	ADJ
bracis-28399	106	19	vectors	vector	NOUN
bracis-28399	106	20	to	to	PART
bracis-28399	106	21	be	be	AUX
bracis-28399	106	22	used	use	VERB
bracis-28399	106	23	as	as	ADP
bracis-28399	106	24	features	feature	NOUN
bracis-28399	106	25	.	.	PUNCT
bracis-28399	107	1	on	on	ADP
bracis-28399	107	2	the	the	DET
bracis-28399	107	3	left	left	NOUN
bracis-28399	107	4	,	,	PUNCT
bracis-28399	107	5	we	we	PRON
bracis-28399	107	6	use	use	VERB
bracis-28399	107	7	a	a	DET
bracis-28399	107	8	sliding	slide	VERB
bracis-28399	107	9	window	window	NOUN
bracis-28399	107	10	of	of	ADP
bracis-28399	107	11	2	2	NUM
bracis-28399	107	12	bp	bp	NOUN
bracis-28399	107	13	to	to	PART
bracis-28399	107	14	extract	extract	VERB
bracis-28399	107	15	all	all	DET
bracis-28399	107	16	7	7	NUM
bracis-28399	107	17	dinucleotides	dinucleotide	NOUN
bracis-28399	107	18	and	and	CCONJ
bracis-28399	107	19	then	then	ADV
bracis-28399	107	20	apply	apply	VERB
bracis-28399	107	21	the	the	DET
bracis-28399	107	22	mapping	mapping	NOUN
bracis-28399	107	23	function	function	NOUN
bracis-28399	107	24	to	to	PART
bracis-28399	107	25	convert	convert	VERB
bracis-28399	107	26	them	they	PRON
bracis-28399	107	27	to	to	ADP
bracis-28399	107	28	numeric	numeric	ADJ
bracis-28399	107	29	values	value	NOUN
bracis-28399	107	30	using	use	VERB
bracis-28399	107	31	the	the	DET
bracis-28399	107	32	physicochemical	physicochemical	ADJ
bracis-28399	107	33	property	property	NOUN
bracis-28399	107	34	“	"	PUNCT
bracis-28399	107	35	shift	shift	NOUN
bracis-28399	107	36	”	"	PUNCT
bracis-28399	107	37	.	.	PUNCT
bracis-28399	108	1	on	on	ADP
bracis-28399	108	2	the	the	DET
bracis-28399	108	3	right	right	NOUN
bracis-28399	108	4	,	,	PUNCT
bracis-28399	108	5	we	we	PRON
bracis-28399	108	6	apply	apply	VERB
bracis-28399	108	7	a	a	DET
bracis-28399	108	8	similar	similar	ADJ
bracis-28399	108	9	strategy	strategy	NOUN
bracis-28399	108	10	with	with	ADP
bracis-28399	108	11	a	a	DET
bracis-28399	108	12	sliding	slide	VERB
bracis-28399	108	13	window	window	NOUN
bracis-28399	108	14	of	of	ADP
bracis-28399	108	15	3	3	NUM
bracis-28399	108	16	bp	bp	PROPN
bracis-28399	108	17	to	to	PART
bracis-28399	108	18	create	create	VERB
bracis-28399	108	19	a	a	DET
bracis-28399	108	20	mapped	map	VERB
bracis-28399	108	21	vector	vector	NOUN
bracis-28399	108	22	of	of	ADP
bracis-28399	108	23	length	length	NOUN
bracis-28399	108	24	6	6	NUM
bracis-28399	108	25	using	use	VERB
bracis-28399	108	26	the	the	DET
bracis-28399	108	27	trinucleotide	trinucleotide	ADJ
bracis-28399	108	28	physicochemical	physicochemical	ADJ
bracis-28399	108	29	property	property	NOUN
bracis-28399	108	30	“	"	PUNCT
bracis-28399	108	31	nucleosome	nucleosome	PROPN
bracis-28399	108	32	”	"	PUNCT
bracis-28399	108	33	.	.	PUNCT
bracis-28399	109	1	fig	fig	NOUN
bracis-28399	109	2	.	.	PUNCT
bracis-28399	110	1	2	2	X
bracis-28399	110	2	.	.	X
bracis-28399	110	3	illustration	illustration	NOUN
bracis-28399	110	4	of	of	ADP
bracis-28399	110	5	the	the	DET
bracis-28399	110	6	conversion	conversion	NOUN
bracis-28399	110	7	process	process	NOUN
bracis-28399	110	8	of	of	ADP
bracis-28399	110	9	a	a	DET
bracis-28399	110	10	sequence	sequence	NOUN
bracis-28399	110	11	.	.	PUNCT
bracis-28399	111	1	on	on	ADP
bracis-28399	111	2	the	the	DET
bracis-28399	111	3	left	left	NOUN
bracis-28399	111	4	,	,	PUNCT
bracis-28399	111	5	the	the	DET
bracis-28399	111	6	dinucleotides	dinucleotide	NOUN
bracis-28399	111	7	are	be	AUX
bracis-28399	111	8	mapped	map	VERB
bracis-28399	111	9	to	to	ADP
bracis-28399	111	10	the	the	DET
bracis-28399	111	11	physicochemical	physicochemical	ADJ
bracis-28399	111	12	property	property	NOUN
bracis-28399	111	13	“	"	PUNCT
bracis-28399	111	14	shift	shift	NOUN
bracis-28399	111	15	”	"	PUNCT
bracis-28399	111	16	.	.	PUNCT
bracis-28399	112	1	on	on	ADP
bracis-28399	112	2	the	the	DET
bracis-28399	112	3	right	right	NOUN
bracis-28399	112	4	,	,	PUNCT
bracis-28399	112	5	the	the	DET
bracis-28399	112	6	trinucleotides	trinucleotide	NOUN
bracis-28399	112	7	are	be	AUX
bracis-28399	112	8	mapped	map	VERB
bracis-28399	112	9	to	to	ADP
bracis-28399	112	10	the	the	DET
bracis-28399	112	11	physicochemical	physicochemical	ADJ
bracis-28399	112	12	property	property	NOUN
bracis-28399	112	13	“	"	PUNCT
bracis-28399	112	14	nucleosome	nucleosome	PROPN
bracis-28399	112	15	”	"	PUNCT
bracis-28399	112	16	.	.	PUNCT
bracis-28399	113	1	full	full	ADJ
bracis-28399	113	2	size	size	NOUN
bracis-28399	113	3	image	image	NOUN
bracis-28399	113	4	with	with	ADP
bracis-28399	113	5	this	this	DET
bracis-28399	113	6	approach	approach	NOUN
bracis-28399	113	7	,	,	PUNCT
bracis-28399	113	8	we	we	PRON
bracis-28399	113	9	can	can	AUX
bracis-28399	113	10	describe	describe	VERB
bracis-28399	113	11	the	the	DET
bracis-28399	113	12	profiles	profile	NOUN
bracis-28399	113	13	of	of	ADP
bracis-28399	113	14	properties	property	NOUN
bracis-28399	113	15	in	in	ADP
bracis-28399	113	16	each	each	DET
bracis-28399	113	17	dataset	dataset	NOUN
bracis-28399	113	18	.	.	PUNCT
bracis-28399	114	1	for	for	ADP
bracis-28399	114	2	example	example	NOUN
bracis-28399	114	3	,	,	PUNCT
bracis-28399	114	4	fig	fig	NOUN
bracis-28399	114	5	.	.	PUNCT
bracis-28399	114	6	 	 	SPACE
bracis-28399	114	7	3	3	NUM
bracis-28399	114	8	illustrates	illustrate	VERB
bracis-28399	114	9	all	all	DET
bracis-28399	114	10	12	12	NUM
bracis-28399	114	11	trinucleotide	trinucleotide	NOUN
bracis-28399	114	12	average	average	ADJ
bracis-28399	114	13	profiles	profile	NOUN
bracis-28399	114	14	in	in	ADP
bracis-28399	114	15	the	the	DET
bracis-28399	114	16	human_non_tata	human_non_tata	NUM
bracis-28399	114	17	dataset	dataset	NOUN
bracis-28399	114	18	.	.	PUNCT
bracis-28399	115	1	there	there	PRON
bracis-28399	115	2	is	be	VERB
bracis-28399	115	3	one	one	NUM
bracis-28399	115	4	graph	graph	NOUN
bracis-28399	115	5	for	for	ADP
bracis-28399	115	6	each	each	DET
bracis-28399	115	7	trinucleotide	trinucleotide	ADJ
bracis-28399	115	8	property	property	NOUN
bracis-28399	115	9	.	.	PUNCT
bracis-28399	116	1	each	each	DET
bracis-28399	116	2	point	point	NOUN
bracis-28399	116	3	presents	present	VERB
bracis-28399	116	4	the	the	DET
bracis-28399	116	5	average	average	ADJ
bracis-28399	116	6	property	property	NOUN
bracis-28399	116	7	value	value	NOUN
bracis-28399	116	8	in	in	ADP
bracis-28399	116	9	a	a	DET
bracis-28399	116	10	specific	specific	ADJ
bracis-28399	116	11	position	position	NOUN
bracis-28399	116	12	of	of	ADP
bracis-28399	116	13	the	the	DET
bracis-28399	116	14	analyzed	analyze	VERB
bracis-28399	116	15	sequences	sequence	NOUN
bracis-28399	116	16	.	.	PUNCT
bracis-28399	117	1	the	the	DET
bracis-28399	117	2	positions	position	NOUN
bracis-28399	117	3	in	in	ADP
bracis-28399	117	4	the	the	DET
bracis-28399	117	5	x	x	NOUN
bracis-28399	117	6	-	-	NOUN
bracis-28399	117	7	axis	axis	NOUN
bracis-28399	117	8	give	give	VERB
bracis-28399	117	9	negative	negative	ADJ
bracis-28399	117	10	values	value	NOUN
bracis-28399	117	11	for	for	ADP
bracis-28399	117	12	the	the	DET
bracis-28399	117	13	upstream	upstream	ADJ
bracis-28399	117	14	part	part	NOUN
bracis-28399	117	15	of	of	ADP
bracis-28399	117	16	sequences	sequence	NOUN
bracis-28399	117	17	and	and	CCONJ
bracis-28399	117	18	positive	positive	ADJ
bracis-28399	117	19	ones	one	NOUN
bracis-28399	117	20	for	for	ADP
bracis-28399	117	21	the	the	DET
bracis-28399	117	22	downstream	downstream	ADJ
bracis-28399	117	23	portion	portion	NOUN
bracis-28399	117	24	.	.	PUNCT
bracis-28399	118	1	position	position	NOUN
bracis-28399	118	2	zero	zero	NUM
bracis-28399	118	3	is	be	AUX
bracis-28399	118	4	the	the	DET
bracis-28399	118	5	tss	tss	NOUN
bracis-28399	118	6	.	.	PUNCT
bracis-28399	119	1	we	we	PRON
bracis-28399	119	2	can	can	AUX
bracis-28399	119	3	see	see	VERB
bracis-28399	119	4	the	the	DET
bracis-28399	119	5	different	different	ADJ
bracis-28399	119	6	patterns	pattern	NOUN
bracis-28399	119	7	in	in	ADP
bracis-28399	119	8	the	the	DET
bracis-28399	119	9	promoter	promoter	NOUN
bracis-28399	119	10	and	and	CCONJ
bracis-28399	119	11	non	non	ADJ
bracis-28399	119	12	-	-	ADJ
bracis-28399	119	13	promoter	promoter	ADJ
bracis-28399	119	14	samples	sample	NOUN
bracis-28399	119	15	.	.	PUNCT
bracis-28399	120	1	the	the	DET
bracis-28399	120	2	non	non	ADJ
bracis-28399	120	3	-	-	ADJ
bracis-28399	120	4	promoter	promoter	NOUN
bracis-28399	120	5	’s	’s	PART
bracis-28399	120	6	averages	average	NOUN
bracis-28399	120	7	tend	tend	VERB
bracis-28399	120	8	not	not	PART
bracis-28399	120	9	to	to	PART
bracis-28399	120	10	show	show	VERB
bracis-28399	120	11	significant	significant	ADJ
bracis-28399	120	12	variations	variation	NOUN
bracis-28399	120	13	,	,	PUNCT
bracis-28399	120	14	while	while	SCONJ
bracis-28399	120	15	the	the	DET
bracis-28399	120	16	promoter	promoter	NOUN
bracis-28399	120	17	’s	’s	PART
bracis-28399	120	18	averages	average	NOUN
bracis-28399	120	19	tend	tend	VERB
bracis-28399	120	20	to	to	PART
bracis-28399	120	21	vary	vary	VERB
bracis-28399	120	22	around	around	ADP
bracis-28399	120	23	the	the	DET
bracis-28399	120	24	tss	tss	NOUN
bracis-28399	120	25	position	position	NOUN
bracis-28399	120	26	.	.	PUNCT
bracis-28399	121	1	fig	fig	NOUN
bracis-28399	121	2	.	.	PUNCT
bracis-28399	122	1	3	3	X
bracis-28399	122	2	.	.	X
bracis-28399	122	3	average	average	ADJ
bracis-28399	122	4	profiles	profile	NOUN
bracis-28399	122	5	of	of	ADP
bracis-28399	122	6	twelve	twelve	NUM
bracis-28399	122	7	features	feature	NOUN
bracis-28399	122	8	along	along	ADP
bracis-28399	122	9	promoter	promoter	NOUN
bracis-28399	122	10	and	and	CCONJ
bracis-28399	122	11	non	non	ADJ
bracis-28399	122	12	-	-	ADJ
bracis-28399	122	13	promoter	promoter	ADJ
bracis-28399	122	14	sequences	sequence	NOUN
bracis-28399	122	15	of	of	ADP
bracis-28399	122	16	the	the	DET
bracis-28399	122	17	251bp	251bp	NOUN
bracis-28399	122	18	dataset	dataset	VERB
bracis-28399	122	19	human_non_tata	human_non_tata	PROPN
bracis-28399	122	20	.	.	PUNCT
bracis-28399	123	1	each	each	DET
bracis-28399	123	2	graph	graph	NOUN
bracis-28399	123	3	is	be	AUX
bracis-28399	123	4	related	relate	VERB
bracis-28399	123	5	to	to	ADP
bracis-28399	123	6	a	a	DET
bracis-28399	123	7	different	different	ADJ
bracis-28399	123	8	trinucleotide	trinucleotide	NOUN
bracis-28399	123	9	’s	’s	PART
bracis-28399	123	10	physicochemical	physicochemical	ADJ
bracis-28399	123	11	properties	property	NOUN
bracis-28399	123	12	.	.	PUNCT
bracis-28399	124	1	full	full	ADJ
bracis-28399	124	2	size	size	NOUN
bracis-28399	124	3	image	image	NOUN
bracis-28399	124	4	2.3	2.3	NUM
bracis-28399	124	5	k	k	NOUN
bracis-28399	124	6	-	-	ADJ
bracis-28399	124	7	fold	fold	ADJ
bracis-28399	124	8	cross	cross	ADJ
bracis-28399	124	9	-	-	ADJ
bracis-28399	124	10	validation	validation	ADJ
bracis-28399	124	11	evaluation	evaluation	NOUN
bracis-28399	124	12	k	k	NOUN
bracis-28399	124	13	-	-	ADJ
bracis-28399	124	14	fold	fold	ADJ
bracis-28399	124	15	cross	cross	NOUN
bracis-28399	124	16	-	-	NOUN
bracis-28399	124	17	validation	validation	ADJ
bracis-28399	124	18	 	 	SPACE
bracis-28399	125	1	[	[	X
bracis-28399	125	2	13	13	NUM
bracis-28399	125	3	]	]	PUNCT
bracis-28399	125	4	is	be	AUX
bracis-28399	125	5	a	a	DET
bracis-28399	125	6	popular	popular	ADJ
bracis-28399	125	7	technique	technique	NOUN
bracis-28399	125	8	used	use	VERB
bracis-28399	125	9	in	in	ADP
bracis-28399	125	10	machine	machine	NOUN
bracis-28399	125	11	learning	learning	NOUN
bracis-28399	125	12	and	and	CCONJ
bracis-28399	125	13	statistical	statistical	ADJ
bracis-28399	125	14	modeling	modeling	NOUN
bracis-28399	125	15	for	for	ADP
bracis-28399	125	16	assessing	assess	VERB
bracis-28399	125	17	model	model	NOUN
bracis-28399	125	18	performance	performance	NOUN
bracis-28399	125	19	.	.	PUNCT
bracis-28399	126	1	it	it	PRON
bracis-28399	126	2	involves	involve	VERB
bracis-28399	126	3	dividing	divide	VERB
bracis-28399	126	4	the	the	DET
bracis-28399	126	5	dataset	dataset	NOUN
bracis-28399	126	6	into	into	ADP
bracis-28399	126	7	k	k	PROPN
bracis-28399	126	8	subsets	subset	NOUN
bracis-28399	126	9	or	or	CCONJ
bracis-28399	126	10	folds	fold	NOUN
bracis-28399	126	11	,	,	PUNCT
bracis-28399	126	12	using	use	VERB
bracis-28399	126	13	one	one	NUM
bracis-28399	126	14	fold	fold	NOUN
bracis-28399	126	15	as	as	SCONJ
bracis-28399	126	16	the	the	DET
bracis-28399	126	17	validation	validation	NOUN
bracis-28399	126	18	set	set	NOUN
bracis-28399	126	19	and	and	CCONJ
bracis-28399	126	20	the	the	DET
bracis-28399	126	21	remaining	remain	VERB
bracis-28399	126	22	k-1	k-1	PROPN
bracis-28399	126	23	folds	fold	NOUN
bracis-28399	126	24	as	as	ADP
bracis-28399	126	25	the	the	DET
bracis-28399	126	26	training	training	NOUN
bracis-28399	126	27	set	set	NOUN
bracis-28399	126	28	.	.	PUNCT
bracis-28399	127	1	this	this	DET
bracis-28399	127	2	process	process	NOUN
bracis-28399	127	3	is	be	AUX
bracis-28399	127	4	repeated	repeat	VERB
bracis-28399	127	5	k	k	PROPN
bracis-28399	127	6	times	time	NOUN
bracis-28399	127	7	,	,	PUNCT
bracis-28399	127	8	with	with	ADP
bracis-28399	127	9	each	each	DET
bracis-28399	127	10	fold	fold	NOUN
bracis-28399	127	11	serving	serve	VERB
bracis-28399	127	12	as	as	ADP
bracis-28399	127	13	the	the	DET
bracis-28399	127	14	validation	validation	NOUN
bracis-28399	127	15	set	set	VERB
bracis-28399	127	16	once	once	ADV
bracis-28399	127	17	.	.	PUNCT
bracis-28399	128	1	by	by	ADP
bracis-28399	128	2	repeatedly	repeatedly	ADV
bracis-28399	128	3	training	training	NOUN
bracis-28399	128	4	and	and	CCONJ
bracis-28399	128	5	evaluating	evaluate	VERB
bracis-28399	128	6	the	the	DET
bracis-28399	128	7	model	model	NOUN
bracis-28399	128	8	on	on	ADP
bracis-28399	128	9	different	different	ADJ
bracis-28399	128	10	subsets	subset	NOUN
bracis-28399	128	11	of	of	ADP
bracis-28399	128	12	the	the	DET
bracis-28399	128	13	data	datum	NOUN
bracis-28399	128	14	,	,	PUNCT
bracis-28399	128	15	k	k	ADJ
bracis-28399	128	16	-	-	ADJ
bracis-28399	128	17	fold	fold	ADJ
bracis-28399	128	18	cross	cross	NOUN
bracis-28399	128	19	-	-	ADJ
bracis-28399	128	20	validation	validation	NOUN
bracis-28399	128	21	provides	provide	VERB
bracis-28399	128	22	a	a	DET
bracis-28399	128	23	robust	robust	ADJ
bracis-28399	128	24	estimate	estimate	NOUN
bracis-28399	128	25	of	of	ADP
bracis-28399	128	26	the	the	DET
bracis-28399	128	27	model	model	NOUN
bracis-28399	128	28	’s	’s	PART
bracis-28399	128	29	performance	performance	NOUN
bracis-28399	128	30	on	on	ADP
bracis-28399	128	31	new	new	ADJ
bracis-28399	128	32	,	,	PUNCT
bracis-28399	128	33	unseen	unseen	ADJ
bracis-28399	128	34	data	datum	NOUN
bracis-28399	128	35	,	,	PUNCT
bracis-28399	128	36	helping	help	VERB
bracis-28399	128	37	to	to	PART
bracis-28399	128	38	mitigate	mitigate	VERB
bracis-28399	128	39	the	the	DET
bracis-28399	128	40	risk	risk	NOUN
bracis-28399	128	41	of	of	ADP
bracis-28399	128	42	overfitting	overfitte	VERB
bracis-28399	128	43	.	.	PUNCT
bracis-28399	129	1	to	to	PART
bracis-28399	129	2	address	address	VERB
bracis-28399	129	3	the	the	DET
bracis-28399	129	4	issue	issue	NOUN
bracis-28399	129	5	of	of	ADP
bracis-28399	129	6	imbalanced	imbalanced	ADJ
bracis-28399	129	7	target	target	NOUN
bracis-28399	129	8	variables	variable	NOUN
bracis-28399	129	9	,	,	PUNCT
bracis-28399	129	10	a	a	DET
bracis-28399	129	11	modification	modification	NOUN
bracis-28399	129	12	of	of	ADP
bracis-28399	129	13	k	k	ADJ
bracis-28399	129	14	-	-	ADJ
bracis-28399	129	15	fold	fold	ADJ
bracis-28399	129	16	cross	cross	ADJ
bracis-28399	129	17	-	-	ADJ
bracis-28399	129	18	validation	validation	NOUN
bracis-28399	129	19	called	call	VERB
bracis-28399	129	20	stratified	stratified	ADJ
bracis-28399	129	21	k	k	ADJ
bracis-28399	129	22	-	-	ADJ
bracis-28399	129	23	fold	fold	ADJ
bracis-28399	129	24	cross	cross	NOUN
bracis-28399	129	25	-	-	NOUN
bracis-28399	129	26	validation	validation	ADJ
bracis-28399	129	27	 	 	SPACE
bracis-28399	130	1	[	[	X
bracis-28399	130	2	11	11	NUM
bracis-28399	130	3	]	]	PUNCT
bracis-28399	130	4	is	be	AUX
bracis-28399	130	5	often	often	ADV
bracis-28399	130	6	employed	employ	VERB
bracis-28399	130	7	.	.	PUNCT
bracis-28399	131	1	stratified	stratify	VERB
bracis-28399	131	2	k	k	ADJ
bracis-28399	131	3	-	-	ADJ
bracis-28399	131	4	fold	fold	ADJ
bracis-28399	131	5	cross	cross	ADJ
bracis-28399	131	6	-	-	ADJ
bracis-28399	131	7	validation	validation	ADJ
bracis-28399	131	8	ensures	ensure	VERB
bracis-28399	131	9	that	that	SCONJ
bracis-28399	131	10	each	each	DET
bracis-28399	131	11	fold	fold	NOUN
bracis-28399	131	12	maintains	maintain	VERB
bracis-28399	131	13	a	a	DET
bracis-28399	131	14	similar	similar	ADJ
bracis-28399	131	15	distribution	distribution	NOUN
bracis-28399	131	16	of	of	ADP
bracis-28399	131	17	classes	class	NOUN
bracis-28399	131	18	as	as	ADP
bracis-28399	131	19	the	the	DET
bracis-28399	131	20	overall	overall	ADJ
bracis-28399	131	21	dataset	dataset	NOUN
bracis-28399	131	22	.	.	PUNCT
bracis-28399	132	1	it	it	PRON
bracis-28399	132	2	involves	involve	VERB
bracis-28399	132	3	dividing	divide	VERB
bracis-28399	132	4	the	the	DET
bracis-28399	132	5	dataset	dataset	NOUN
bracis-28399	132	6	into	into	ADP
bracis-28399	132	7	k	k	PROPN
bracis-28399	132	8	folds	fold	NOUN
bracis-28399	132	9	and	and	CCONJ
bracis-28399	132	10	adjusting	adjust	VERB
bracis-28399	132	11	the	the	DET
bracis-28399	132	12	fold	fold	NOUN
bracis-28399	132	13	split	split	NOUN
bracis-28399	132	14	to	to	PART
bracis-28399	132	15	preserve	preserve	VERB
bracis-28399	132	16	the	the	DET
bracis-28399	132	17	class	class	NOUN
bracis-28399	132	18	distribution	distribution	NOUN
bracis-28399	132	19	in	in	ADP
bracis-28399	132	20	both	both	CCONJ
bracis-28399	132	21	the	the	DET
bracis-28399	132	22	training	training	NOUN
bracis-28399	132	23	and	and	CCONJ
bracis-28399	132	24	validation	validation	NOUN
bracis-28399	132	25	sets	set	NOUN
bracis-28399	132	26	.	.	PUNCT
bracis-28399	133	1	this	this	DET
bracis-28399	133	2	technique	technique	NOUN
bracis-28399	133	3	is	be	AUX
bracis-28399	133	4	particularly	particularly	ADV
bracis-28399	133	5	useful	useful	ADJ
bracis-28399	133	6	when	when	SCONJ
bracis-28399	133	7	dealing	deal	VERB
bracis-28399	133	8	with	with	ADP
bracis-28399	133	9	imbalanced	imbalanced	ADJ
bracis-28399	133	10	datasets	dataset	NOUN
bracis-28399	133	11	,	,	PUNCT
bracis-28399	133	12	as	as	SCONJ
bracis-28399	133	13	it	it	PRON
bracis-28399	133	14	ensures	ensure	VERB
bracis-28399	133	15	that	that	SCONJ
bracis-28399	133	16	the	the	DET
bracis-28399	133	17	model	model	NOUN
bracis-28399	133	18	is	be	AUX
bracis-28399	133	19	evaluated	evaluate	VERB
bracis-28399	133	20	on	on	ADP
bracis-28399	133	21	all	all	DET
bracis-28399	133	22	classes	class	NOUN
bracis-28399	133	23	rather	rather	ADV
bracis-28399	133	24	than	than	ADP
bracis-28399	133	25	being	be	AUX
bracis-28399	133	26	biased	bias	VERB
bracis-28399	133	27	towards	towards	ADP
bracis-28399	133	28	the	the	DET
bracis-28399	133	29	most	most	ADV
bracis-28399	133	30	frequent	frequent	ADJ
bracis-28399	133	31	class	class	NOUN
bracis-28399	133	32	.	.	PUNCT
bracis-28399	134	1	the	the	DET
bracis-28399	134	2	performance	performance	NOUN
bracis-28399	134	3	metrics	metric	NOUN
bracis-28399	134	4	obtained	obtain	VERB
bracis-28399	134	5	from	from	ADP
bracis-28399	134	6	each	each	DET
bracis-28399	134	7	fold	fold	NOUN
bracis-28399	134	8	in	in	ADP
bracis-28399	134	9	k	k	ADJ
bracis-28399	134	10	-	-	ADJ
bracis-28399	134	11	fold	fold	ADJ
bracis-28399	134	12	cross	cross	NOUN
bracis-28399	134	13	-	-	ADJ
bracis-28399	134	14	validation	validation	NOUN
bracis-28399	134	15	are	be	AUX
bracis-28399	134	16	typically	typically	ADV
bracis-28399	134	17	averaged	average	VERB
bracis-28399	134	18	to	to	PART
bracis-28399	134	19	obtain	obtain	VERB
bracis-28399	134	20	an	an	DET
bracis-28399	134	21	overall	overall	ADJ
bracis-28399	134	22	estimate	estimate	NOUN
bracis-28399	134	23	of	of	ADP
bracis-28399	134	24	the	the	DET
bracis-28399	134	25	model	model	NOUN
bracis-28399	134	26	’s	’s	PART
bracis-28399	134	27	performance	performance	NOUN
bracis-28399	134	28	.	.	PUNCT
bracis-28399	135	1	this	this	DET
bracis-28399	135	2	technique	technique	NOUN
bracis-28399	135	3	applies	apply	VERB
bracis-28399	135	4	to	to	ADP
bracis-28399	135	5	various	various	ADJ
bracis-28399	135	6	evaluation	evaluation	NOUN
bracis-28399	135	7	metrics	metric	NOUN
bracis-28399	135	8	and	and	CCONJ
bracis-28399	135	9	provides	provide	VERB
bracis-28399	135	10	a	a	DET
bracis-28399	135	11	more	more	ADV
bracis-28399	135	12	reliable	reliable	ADJ
bracis-28399	135	13	assessment	assessment	NOUN
bracis-28399	135	14	of	of	ADP
bracis-28399	135	15	the	the	DET
bracis-28399	135	16	model	model	NOUN
bracis-28399	135	17	’s	’s	PART
bracis-28399	135	18	generalization	generalization	NOUN
bracis-28399	135	19	ability	ability	NOUN
bracis-28399	135	20	.	.	PUNCT
bracis-28399	136	1	by	by	ADP
bracis-28399	136	2	employing	employ	VERB
bracis-28399	136	3	k	k	ADJ
bracis-28399	136	4	-	-	ADJ
bracis-28399	136	5	fold	fold	ADJ
bracis-28399	136	6	cross	cross	NOUN
bracis-28399	136	7	-	-	NOUN
bracis-28399	136	8	validation	validation	ADJ
bracis-28399	136	9	,	,	PUNCT
bracis-28399	136	10	researchers	researcher	NOUN
bracis-28399	136	11	can	can	AUX
bracis-28399	136	12	confidently	confidently	ADV
bracis-28399	136	13	evaluate	evaluate	VERB
bracis-28399	136	14	their	their	PRON
bracis-28399	136	15	models	model	NOUN
bracis-28399	136	16	and	and	CCONJ
bracis-28399	136	17	make	make	VERB
bracis-28399	136	18	informed	informed	ADJ
bracis-28399	136	19	decisions	decision	NOUN
bracis-28399	136	20	regarding	regard	VERB
bracis-28399	136	21	model	model	NOUN
bracis-28399	136	22	selection	selection	NOUN
bracis-28399	136	23	and	and	CCONJ
bracis-28399	136	24	performance	performance	NOUN
bracis-28399	136	25	comparison	comparison	NOUN
bracis-28399	136	26	in	in	ADP
bracis-28399	136	27	the	the	DET
bracis-28399	136	28	field	field	NOUN
bracis-28399	136	29	of	of	ADP
bracis-28399	136	30	machine	machine	NOUN
bracis-28399	136	31	learning	learning	NOUN
bracis-28399	136	32	and	and	CCONJ
bracis-28399	136	33	statistical	statistical	ADJ
bracis-28399	136	34	modeling	modeling	NOUN
bracis-28399	136	35	.	.	PUNCT
bracis-28399	137	1	2.4	2.4	NUM
bracis-28399	137	2	evaluation	evaluation	NOUN
bracis-28399	137	3	measures	measure	VERB
bracis-28399	137	4	the	the	DET
bracis-28399	137	5	problem	problem	NOUN
bracis-28399	137	6	of	of	ADP
bracis-28399	137	7	promoter	promoter	NOUN
bracis-28399	137	8	classification	classification	NOUN
bracis-28399	137	9	can	can	AUX
bracis-28399	137	10	be	be	AUX
bracis-28399	137	11	defined	define	VERB
bracis-28399	137	12	as	as	ADP
bracis-28399	137	13	a	a	DET
bracis-28399	137	14	binary	binary	ADJ
bracis-28399	137	15	classification	classification	NOUN
bracis-28399	137	16	task	task	NOUN
bracis-28399	137	17	,	,	PUNCT
bracis-28399	137	18	where	where	SCONJ
bracis-28399	137	19	the	the	DET
bracis-28399	137	20	predicted	predict	VERB
bracis-28399	137	21	class	class	NOUN
bracis-28399	137	22	variable	variable	NOUN
bracis-28399	137	23	can	can	AUX
bracis-28399	137	24	take	take	VERB
bracis-28399	137	25	on	on	ADP
bracis-28399	137	26	two	two	NUM
bracis-28399	137	27	values	value	NOUN
bracis-28399	137	28	:	:	PUNCT
bracis-28399	137	29	1	1	NUM
bracis-28399	137	30	(	(	PUNCT
bracis-28399	137	31	one	one	NUM
bracis-28399	137	32	)	)	PUNCT
bracis-28399	137	33	if	if	SCONJ
bracis-28399	137	34	the	the	DET
bracis-28399	137	35	dna	dna	PROPN
bracis-28399	137	36	sequence	sequence	NOUN
bracis-28399	137	37	is	be	AUX
bracis-28399	137	38	predicted	predict	VERB
bracis-28399	137	39	to	to	PART
bracis-28399	137	40	be	be	AUX
bracis-28399	137	41	a	a	DET
bracis-28399	137	42	promoter	promoter	NOUN
bracis-28399	137	43	and	and	CCONJ
bracis-28399	137	44	0	0	NUM
bracis-28399	137	45	(	(	PUNCT
bracis-28399	137	46	zero	zero	NUM
bracis-28399	137	47	)	)	PUNCT
bracis-28399	137	48	otherwise	otherwise	ADV
bracis-28399	137	49	.	.	PUNCT
bracis-28399	138	1	this	this	DET
bracis-28399	138	2	classification	classification	NOUN
bracis-28399	138	3	task	task	NOUN
bracis-28399	138	4	leads	lead	VERB
bracis-28399	138	5	to	to	ADP
bracis-28399	138	6	four	four	NUM
bracis-28399	138	7	possible	possible	ADJ
bracis-28399	138	8	outcomes	outcome	NOUN
bracis-28399	138	9	:	:	PUNCT
bracis-28399	138	10	a	a	DET
bracis-28399	138	11	true	true	ADJ
bracis-28399	138	12	positive	positive	ADJ
bracis-28399	138	13	(	(	PUNCT
bracis-28399	138	14	tp	tp	NOUN
bracis-28399	138	15	)	)	PUNCT
bracis-28399	138	16	,	,	PUNCT
bracis-28399	138	17	which	which	PRON
bracis-28399	138	18	occurs	occur	VERB
bracis-28399	138	19	when	when	SCONJ
bracis-28399	138	20	the	the	DET
bracis-28399	138	21	model	model	NOUN
bracis-28399	138	22	correctly	correctly	ADV
bracis-28399	138	23	identifies	identify	VERB
bracis-28399	138	24	a	a	DET
bracis-28399	138	25	promoter	promoter	NOUN
bracis-28399	138	26	sequence	sequence	NOUN
bracis-28399	138	27	;	;	PUNCT
bracis-28399	138	28	a	a	DET
bracis-28399	138	29	true	true	ADJ
bracis-28399	138	30	negative	negative	ADJ
bracis-28399	138	31	(	(	PUNCT
bracis-28399	138	32	tn	tn	NOUN
bracis-28399	138	33	)	)	PUNCT
bracis-28399	138	34	,	,	PUNCT
bracis-28399	138	35	which	which	PRON
bracis-28399	138	36	occurs	occur	VERB
bracis-28399	138	37	when	when	SCONJ
bracis-28399	138	38	the	the	DET
bracis-28399	138	39	model	model	NOUN
bracis-28399	138	40	correctly	correctly	ADV
bracis-28399	138	41	identifies	identify	VERB
bracis-28399	138	42	a	a	DET
bracis-28399	138	43	non	non	ADJ
bracis-28399	138	44	-	-	ADJ
bracis-28399	138	45	promoter	promoter	ADJ
bracis-28399	138	46	sequence	sequence	NOUN
bracis-28399	138	47	;	;	PUNCT
bracis-28399	138	48	a	a	DET
bracis-28399	138	49	false	false	ADJ
bracis-28399	138	50	positive	positive	ADJ
bracis-28399	138	51	(	(	PUNCT
bracis-28399	138	52	fp	fp	NOUN
bracis-28399	138	53	)	)	PUNCT
bracis-28399	138	54	,	,	PUNCT
bracis-28399	138	55	which	which	PRON
bracis-28399	138	56	occurs	occur	VERB
bracis-28399	138	57	when	when	SCONJ
bracis-28399	138	58	the	the	DET
bracis-28399	138	59	model	model	NOUN
bracis-28399	138	60	incorrectly	incorrectly	ADV
bracis-28399	138	61	identifies	identify	VERB
bracis-28399	138	62	a	a	DET
bracis-28399	138	63	non	non	ADJ
bracis-28399	138	64	-	-	ADJ
bracis-28399	138	65	promoter	promoter	ADJ
bracis-28399	138	66	sequence	sequence	NOUN
bracis-28399	138	67	as	as	ADP
bracis-28399	138	68	a	a	DET
bracis-28399	138	69	promoter	promoter	NOUN
bracis-28399	138	70	;	;	PUNCT
bracis-28399	138	71	and	and	CCONJ
bracis-28399	138	72	a	a	DET
bracis-28399	138	73	false	false	ADJ
bracis-28399	138	74	negative	negative	ADJ
bracis-28399	138	75	(	(	PUNCT
bracis-28399	138	76	fn	fn	NOUN
bracis-28399	138	77	)	)	PUNCT
bracis-28399	138	78	,	,	PUNCT
bracis-28399	138	79	which	which	PRON
bracis-28399	138	80	occurs	occur	VERB
bracis-28399	138	81	when	when	SCONJ
bracis-28399	138	82	the	the	DET
bracis-28399	138	83	model	model	NOUN
bracis-28399	138	84	incorrectly	incorrectly	ADV
bracis-28399	138	85	identifies	identify	VERB
bracis-28399	138	86	a	a	DET
bracis-28399	138	87	promoter	promoter	NOUN
bracis-28399	138	88	sequence	sequence	NOUN
bracis-28399	138	89	as	as	ADP
bracis-28399	138	90	a	a	DET
bracis-28399	138	91	non	non	ADJ
bracis-28399	138	92	-	-	NOUN
bracis-28399	138	93	promoter	promoter	NOUN
bracis-28399	138	94	.	.	PUNCT
bracis-28399	138	95	precision	precision	NOUN
bracis-28399	138	96	(	(	PUNCT
bracis-28399	138	97	prec	prec	NOUN
bracis-28399	138	98	)	)	PUNCT
bracis-28399	138	99	measures	measure	VERB
bracis-28399	138	100	the	the	DET
bracis-28399	138	101	relevance	relevance	NOUN
bracis-28399	138	102	of	of	ADP
bracis-28399	138	103	the	the	DET
bracis-28399	138	104	predicted	predict	VERB
bracis-28399	138	105	true	true	ADJ
bracis-28399	138	106	positives	positive	NOUN
bracis-28399	138	107	(	(	PUNCT
bracis-28399	138	108	eq	eq	NOUN
bracis-28399	138	109	.	.	PUNCT
bracis-28399	138	110	 	 	SPACE
bracis-28399	138	111	1	1	NUM
bracis-28399	138	112	)	)	PUNCT
bracis-28399	138	113	.	.	PUNCT
bracis-28399	139	1	sensitivity	sensitivity	NOUN
bracis-28399	139	2	,	,	PUNCT
bracis-28399	139	3	also	also	ADV
bracis-28399	139	4	known	know	VERB
bracis-28399	139	5	as	as	ADP
bracis-28399	139	6	recall	recall	NOUN
bracis-28399	139	7	(	(	PUNCT
bracis-28399	139	8	sn	sn	PROPN
bracis-28399	139	9	)	)	PUNCT
bracis-28399	139	10	,	,	PUNCT
bracis-28399	139	11	measures	measure	VERB
bracis-28399	139	12	the	the	DET
bracis-28399	139	13	proportion	proportion	NOUN
bracis-28399	139	14	of	of	ADP
bracis-28399	139	15	true	true	ADJ
bracis-28399	139	16	positives	positive	NOUN
bracis-28399	139	17	(	(	PUNCT
bracis-28399	139	18	eq	eq	NOUN
bracis-28399	139	19	.	.	PUNCT
bracis-28399	139	20	 	 	SPACE
bracis-28399	139	21	2	2	NUM
bracis-28399	139	22	)	)	PUNCT
bracis-28399	139	23	.	.	PUNCT
bracis-28399	140	1	specificity	specificity	NOUN
bracis-28399	140	2	(	(	PUNCT
bracis-28399	140	3	sp	sp	NOUN
bracis-28399	140	4	)	)	PUNCT
bracis-28399	140	5	measures	measure	VERB
bracis-28399	140	6	the	the	DET
bracis-28399	140	7	proportion	proportion	NOUN
bracis-28399	140	8	of	of	ADP
bracis-28399	140	9	true	true	ADJ
bracis-28399	140	10	negatives	negative	NOUN
bracis-28399	140	11	(	(	PUNCT
bracis-28399	140	12	eq	eq	NOUN
bracis-28399	140	13	.	.	PUNCT
bracis-28399	140	14	 	 	SPACE
bracis-28399	140	15	3	3	NUM
bracis-28399	140	16	)	)	PUNCT
bracis-28399	140	17	.	.	PUNCT
bracis-28399	141	1	accuracy	accuracy	NOUN
bracis-28399	141	2	(	(	PUNCT
bracis-28399	141	3	acc	acc	PROPN
bracis-28399	141	4	)	)	PUNCT
bracis-28399	141	5	reflects	reflect	VERB
bracis-28399	141	6	the	the	DET
bracis-28399	141	7	proportion	proportion	NOUN
bracis-28399	141	8	of	of	ADP
bracis-28399	141	9	correct	correct	ADJ
bracis-28399	141	10	predictions	prediction	NOUN
bracis-28399	141	11	(	(	PUNCT
bracis-28399	141	12	eq	eq	NOUN
bracis-28399	141	13	.	.	PUNCT
bracis-28399	141	14	 	 	SPACE
bracis-28399	141	15	4	4	NUM
bracis-28399	141	16	)	)	PUNCT
bracis-28399	141	17	.	.	PUNCT
bracis-28399	142	1	the	the	DET
bracis-28399	142	2	f1	f1	NOUN
bracis-28399	142	3	-	-	PUNCT
bracis-28399	142	4	score	score	NOUN
bracis-28399	142	5	(	(	PUNCT
bracis-28399	142	6	f1	f1	NOUN
bracis-28399	142	7	)	)	PUNCT
bracis-28399	142	8	metric	metric	NOUN
bracis-28399	142	9	,	,	PUNCT
bracis-28399	142	10	a	a	DET
bracis-28399	142	11	harmonic	harmonic	ADJ
bracis-28399	142	12	mean	mean	NOUN
bracis-28399	142	13	of	of	ADP
bracis-28399	142	14	precision	precision	NOUN
bracis-28399	142	15	and	and	CCONJ
bracis-28399	142	16	recall	recall	NOUN
bracis-28399	142	17	,	,	PUNCT
bracis-28399	142	18	combines	combine	VERB
bracis-28399	142	19	both	both	DET
bracis-28399	142	20	measures	measure	NOUN
bracis-28399	142	21	and	and	CCONJ
bracis-28399	142	22	assesses	assess	VERB
bracis-28399	142	23	the	the	DET
bracis-28399	142	24	classifier	classifier	NOUN
bracis-28399	142	25	’s	’s	PART
bracis-28399	142	26	performance	performance	NOUN
bracis-28399	142	27	(	(	PUNCT
bracis-28399	142	28	eq	eq	NOUN
bracis-28399	142	29	.	.	PUNCT
bracis-28399	142	30	 	 	SPACE
bracis-28399	142	31	5	5	NUM
bracis-28399	142	32	)	)	PUNCT
bracis-28399	142	33	.	.	PUNCT
bracis-28399	143	1	$	$	SYM
bracis-28399	143	2	$	$	SYM
bracis-28399	143	3	\begin{aligned	\begin{aligne	VERB
bracis-28399	143	4	}	}	PUNCT
bracis-28399	143	5	prec	prec	NOUN
bracis-28399	143	6	=	=	SYM
bracis-28399	143	7	\frac{tp}{tp+fp	\frac{tp}{tp+fp	ADJ
bracis-28399	143	8	}	}	PUNCT
bracis-28399	143	9	\end{aligned}$$	\end{aligned}$$	X
bracis-28399	143	10	(	(	PUNCT
bracis-28399	143	11	1	1	NUM
bracis-28399	143	12	)	)	PUNCT
bracis-28399	143	13	$	$	SYM
bracis-28399	143	14	$	$	SYM
bracis-28399	143	15	\begin{aligned	\begin{aligne	VERB
bracis-28399	143	16	}	}	PUNCT
bracis-28399	143	17	sn	sn	NOUN
bracis-28399	143	18	=	=	PUNCT
bracis-28399	143	19	\frac{tp}{tp+fn	\frac{tp}{tp+fn	NOUN
bracis-28399	143	20	}	}	PUNCT
bracis-28399	143	21	\end{aligned}$$	\end{aligned}$$	X
bracis-28399	143	22	(	(	PUNCT
bracis-28399	143	23	2	2	NUM
bracis-28399	143	24	)	)	PUNCT
bracis-28399	143	25	$	$	SYM
bracis-28399	143	26	$	$	SYM
bracis-28399	143	27	\begin{aligned	\begin{aligne	VERB
bracis-28399	143	28	}	}	PUNCT
bracis-28399	143	29	sp	sp	ADP
bracis-28399	143	30	=	=	NOUN
bracis-28399	143	31	\frac{tn}{tn+fp	\frac{tn}{tn+fp	ADJ
bracis-28399	143	32	}	}	PUNCT
bracis-28399	143	33	\end{aligned}$$	\end{aligned}$$	X
bracis-28399	143	34	(	(	PUNCT
bracis-28399	143	35	3	3	NUM
bracis-28399	143	36	)	)	PUNCT
bracis-28399	143	37	$	$	SYM
bracis-28399	143	38	$	$	SYM
bracis-28399	143	39	\begin{aligned	\begin{aligne	VERB
bracis-28399	143	40	}	}	PUNCT
bracis-28399	143	41	acc=	acc=	PROPN
bracis-28399	143	42	\frac{tp+tn}{tp+tn+fp+fn	\frac{tp+tn}{tp+tn+fp+fn	NOUN
bracis-28399	143	43	}	}	PUNCT
bracis-28399	143	44	\end{aligned}$$	\end{aligned}$$	X
bracis-28399	143	45	(	(	PUNCT
bracis-28399	143	46	4	4	NUM
bracis-28399	143	47	)	)	PUNCT
bracis-28399	143	48	$	$	SYM
bracis-28399	143	49	$	$	SYM
bracis-28399	143	50	\begin{aligned	\begin{aligne	VERB
bracis-28399	143	51	}	}	PUNCT
bracis-28399	143	52	f1	f1	NOUN
bracis-28399	143	53	=	=	SYM
bracis-28399	143	54	2	2	NUM
bracis-28399	143	55	\times	\time	NOUN
bracis-28399	143	56	\frac{prec	\frac{prec	PUNCT
bracis-28399	143	57	\times	\times	ADP
bracis-28399	143	58	sn}{prec	sn}{prec	PROPN
bracis-28399	143	59	+	+	CCONJ
bracis-28399	143	60	sn	sn	PROPN
bracis-28399	143	61	}	}	PUNCT
bracis-28399	143	62	\end{aligned}$$	\end{aligned}$$	X
bracis-28399	143	63	(	(	PUNCT
bracis-28399	143	64	5	5	NUM
bracis-28399	143	65	)	)	PUNCT
bracis-28399	143	66	matthews	matthews	NOUN
bracis-28399	143	67	correlation	correlation	NOUN
bracis-28399	143	68	coefficient	coefficient	NOUN
bracis-28399	143	69	(	(	PUNCT
bracis-28399	143	70	mcc	mcc	NOUN
bracis-28399	143	71	)	)	PUNCT
bracis-28399	143	72	is	be	AUX
bracis-28399	143	73	a	a	DET
bracis-28399	143	74	balanced	balanced	ADJ
bracis-28399	143	75	metric	metric	NOUN
bracis-28399	143	76	that	that	PRON
bracis-28399	143	77	considers	consider	VERB
bracis-28399	143	78	all	all	DET
bracis-28399	143	79	four	four	NUM
bracis-28399	143	80	components	component	NOUN
bracis-28399	143	81	of	of	ADP
bracis-28399	143	82	the	the	DET
bracis-28399	143	83	confusion	confusion	NOUN
bracis-28399	143	84	matrix	matrix	NOUN
bracis-28399	143	85	and	and	CCONJ
bracis-28399	143	86	provides	provide	VERB
bracis-28399	143	87	a	a	DET
bracis-28399	143	88	balanced	balanced	ADJ
bracis-28399	143	89	measure	measure	NOUN
bracis-28399	143	90	ranging	range	VERB
bracis-28399	143	91	from	from	ADP
bracis-28399	143	92	-1	-1	ADV
bracis-28399	143	93	to	to	ADP
bracis-28399	143	94	+1	+1	PROPN
bracis-28399	143	95	,	,	PUNCT
bracis-28399	143	96	with	with	ADP
bracis-28399	143	97	+1	+1	PROPN
bracis-28399	143	98	indicating	indicate	VERB
bracis-28399	143	99	perfect	perfect	ADJ
bracis-28399	143	100	classification	classification	NOUN
bracis-28399	143	101	,	,	PUNCT
bracis-28399	143	102	0	0	NUM
bracis-28399	143	103	indicating	indicate	VERB
bracis-28399	143	104	random	random	ADJ
bracis-28399	143	105	classification	classification	NOUN
bracis-28399	143	106	,	,	PUNCT
bracis-28399	143	107	and	and	CCONJ
bracis-28399	143	108	-1	-1	ADP
bracis-28399	143	109	indicating	indicate	VERB
bracis-28399	143	110	completely	completely	ADV
bracis-28399	143	111	opposite	opposite	ADJ
bracis-28399	143	112	classification	classification	NOUN
bracis-28399	143	113	(	(	PUNCT
bracis-28399	143	114	eq	eq	NOUN
bracis-28399	143	115	.	.	PUNCT
bracis-28399	143	116	 	 	SPACE
bracis-28399	143	117	6	6	NUM
bracis-28399	143	118	)	)	PUNCT
bracis-28399	143	119	.	.	PUNCT
bracis-28399	144	1	it	it	PRON
bracis-28399	144	2	is	be	AUX
bracis-28399	144	3	more	more	ADV
bracis-28399	144	4	robust	robust	ADJ
bracis-28399	144	5	than	than	ADP
bracis-28399	144	6	other	other	ADJ
bracis-28399	144	7	metrics	metric	NOUN
bracis-28399	144	8	in	in	ADP
bracis-28399	144	9	handling	handle	VERB
bracis-28399	144	10	class	class	NOUN
bracis-28399	144	11	imbalance	imbalance	NOUN
bracis-28399	144	12	and	and	CCONJ
bracis-28399	144	13	biased	biased	ADJ
bracis-28399	144	14	datasets	dataset	NOUN
bracis-28399	144	15	 	 	SPACE
bracis-28399	145	1	[	[	X
bracis-28399	145	2	35	35	NUM
bracis-28399	145	3	]	]	SYM
bracis-28399	145	4	$	$	SYM
bracis-28399	145	5	$	$	SYM
bracis-28399	145	6	\begin{aligned	\begin{aligne	VERB
bracis-28399	145	7	}	}	PUNCT
bracis-28399	145	8	mcc	mcc	NOUN
bracis-28399	145	9	=	=	PROPN
bracis-28399	145	10	\frac{tp	\frac{tp	NOUN
bracis-28399	145	11	\times	\times	ADP
bracis-28399	145	12	tn	tn	NOUN
bracis-28399	145	13	fp	fp	NOUN
bracis-28399	145	14	\times	\times	ADP
bracis-28399	145	15	fn}{\sqrt{(tp+fp)(tp+fn)(tn+fp)(tn+fn	fn}{\sqrt{(tp+fp)(tp+fn)(tn+fp)(tn+fn	NOUN
bracis-28399	145	16	)	)	PUNCT
bracis-28399	145	17	}	}	PUNCT
bracis-28399	145	18	}	}	PUNCT
bracis-28399	145	19	\end{aligned}$$	\end{aligned}$$	X
bracis-28399	145	20	(	(	PUNCT
bracis-28399	145	21	6	6	NUM
bracis-28399	145	22	)	)	PUNCT
bracis-28399	145	23	the	the	DET
bracis-28399	145	24	area	area	NOUN
bracis-28399	145	25	under	under	ADP
bracis-28399	145	26	the	the	DET
bracis-28399	145	27	curve	curve	NOUN
bracis-28399	145	28	(	(	PUNCT
bracis-28399	145	29	auc	auc	NOUN
bracis-28399	145	30	)	)	PUNCT
bracis-28399	145	31	is	be	AUX
bracis-28399	145	32	a	a	DET
bracis-28399	145	33	metric	metric	ADJ
bracis-28399	145	34	used	use	VERB
bracis-28399	145	35	to	to	PART
bracis-28399	145	36	evaluate	evaluate	VERB
bracis-28399	145	37	the	the	DET
bracis-28399	145	38	performance	performance	NOUN
bracis-28399	145	39	of	of	ADP
bracis-28399	145	40	a	a	DET
bracis-28399	145	41	binary	binary	ADJ
bracis-28399	145	42	classification	classification	NOUN
bracis-28399	145	43	model	model	NOUN
bracis-28399	145	44	.	.	PUNCT
bracis-28399	146	1	it	it	PRON
bracis-28399	146	2	represents	represent	VERB
bracis-28399	146	3	the	the	DET
bracis-28399	146	4	area	area	NOUN
bracis-28399	146	5	under	under	ADP
bracis-28399	146	6	the	the	DET
bracis-28399	146	7	receiver	receiver	NOUN
bracis-28399	146	8	operating	operate	VERB
bracis-28399	146	9	characteristic	characteristic	NOUN
bracis-28399	146	10	(	(	PUNCT
bracis-28399	146	11	roc	roc	PROPN
bracis-28399	146	12	)	)	PUNCT
bracis-28399	146	13	curve	curve	NOUN
bracis-28399	146	14	,	,	PUNCT
bracis-28399	146	15	which	which	PRON
bracis-28399	146	16	plots	plot	VERB
bracis-28399	146	17	the	the	DET
bracis-28399	146	18	true	true	ADJ
bracis-28399	146	19	positive	positive	ADJ
bracis-28399	146	20	rate	rate	NOUN
bracis-28399	146	21	against	against	ADP
bracis-28399	146	22	the	the	DET
bracis-28399	146	23	false	false	ADJ
bracis-28399	146	24	positive	positive	ADJ
bracis-28399	146	25	rate	rate	NOUN
bracis-28399	146	26	for	for	ADP
bracis-28399	146	27	different	different	ADJ
bracis-28399	146	28	classification	classification	NOUN
bracis-28399	146	29	thresholds	threshold	NOUN
bracis-28399	146	30	.	.	PUNCT
bracis-28399	147	1	auc	auc	VERB
bracis-28399	147	2	ranges	range	NOUN
bracis-28399	147	3	from	from	ADP
bracis-28399	147	4	0	0	NUM
bracis-28399	147	5	to	to	ADP
bracis-28399	147	6	1	1	NUM
bracis-28399	147	7	,	,	PUNCT
bracis-28399	147	8	with	with	ADP
bracis-28399	147	9	higher	high	ADJ
bracis-28399	147	10	values	value	NOUN
bracis-28399	147	11	indicating	indicate	VERB
bracis-28399	147	12	better	well	ADJ
bracis-28399	147	13	classification	classification	NOUN
bracis-28399	147	14	performance	performance	NOUN
bracis-28399	147	15	.	.	PUNCT
bracis-28399	148	1	2.5	2.5	NUM
bracis-28399	148	2	hyperparameter	hyperparameter	NOUN
bracis-28399	148	3	optimization	optimization	NOUN
bracis-28399	148	4	the	the	DET
bracis-28399	148	5	tree	tree	NOUN
bracis-28399	148	6	-	-	PUNCT
bracis-28399	148	7	structured	structure	VERB
bracis-28399	148	8	parzen	parzen	NOUN
bracis-28399	148	9	estimator	estimator	NOUN
bracis-28399	148	10	(	(	PUNCT
bracis-28399	148	11	tpe	tpe	NOUN
bracis-28399	148	12	)	)	PUNCT
bracis-28399	148	13	 	 	SPACE
bracis-28399	149	1	[	[	X
bracis-28399	149	2	2	2	X
bracis-28399	149	3	]	]	PUNCT
bracis-28399	149	4	is	be	AUX
bracis-28399	149	5	a	a	DET
bracis-28399	149	6	bayesian	bayesian	ADJ
bracis-28399	149	7	optimization	optimization	NOUN
bracis-28399	149	8	algorithm	algorithm	NOUN
bracis-28399	149	9	that	that	PRON
bracis-28399	149	10	efficiently	efficiently	ADV
bracis-28399	149	11	explores	explore	VERB
bracis-28399	149	12	the	the	DET
bracis-28399	149	13	search	search	NOUN
bracis-28399	149	14	space	space	NOUN
bracis-28399	149	15	to	to	PART
bracis-28399	149	16	find	find	VERB
bracis-28399	149	17	optimal	optimal	ADJ
bracis-28399	149	18	hyperparameters	hyperparameter	NOUN
bracis-28399	149	19	for	for	ADP
bracis-28399	149	20	machine	machine	NOUN
bracis-28399	149	21	learning	learning	NOUN
bracis-28399	149	22	models	model	NOUN
bracis-28399	149	23	.	.	PUNCT
bracis-28399	150	1	tpe	tpe	NOUN
bracis-28399	150	2	models	model	VERB
bracis-28399	150	3	the	the	DET
bracis-28399	150	4	relationship	relationship	NOUN
bracis-28399	150	5	between	between	ADP
bracis-28399	150	6	hyperparameters	hyperparameter	NOUN
bracis-28399	150	7	and	and	CCONJ
bracis-28399	150	8	performance	performance	NOUN
bracis-28399	150	9	metrics	metric	NOUN
bracis-28399	150	10	by	by	ADP
bracis-28399	150	11	maintaining	maintain	VERB
bracis-28399	150	12	two	two	NUM
bracis-28399	150	13	probability	probability	NOUN
bracis-28399	150	14	density	density	NOUN
bracis-28399	150	15	functions	function	NOUN
bracis-28399	150	16	(	(	PUNCT
bracis-28399	150	17	pdfs	pdfs	PROPN
bracis-28399	150	18	)	)	PUNCT
bracis-28399	150	19	representing	represent	VERB
bracis-28399	150	20	successful	successful	ADJ
bracis-28399	150	21	and	and	CCONJ
bracis-28399	150	22	unsuccessful	unsuccessful	ADJ
bracis-28399	150	23	configurations	configuration	NOUN
bracis-28399	150	24	.	.	PUNCT
bracis-28399	151	1	it	it	PRON
bracis-28399	151	2	utilizes	utilize	VERB
bracis-28399	151	3	these	these	DET
bracis-28399	151	4	pdfs	pdfs	NOUN
bracis-28399	151	5	to	to	PART
bracis-28399	151	6	guide	guide	VERB
bracis-28399	151	7	the	the	DET
bracis-28399	151	8	search	search	NOUN
bracis-28399	151	9	towards	towards	ADP
bracis-28399	151	10	regions	region	NOUN
bracis-28399	151	11	of	of	ADP
bracis-28399	151	12	the	the	DET
bracis-28399	151	13	search	search	NOUN
bracis-28399	151	14	space	space	NOUN
bracis-28399	151	15	more	more	ADV
bracis-28399	151	16	likely	likely	ADJ
bracis-28399	151	17	to	to	PART
bracis-28399	151	18	yield	yield	VERB
bracis-28399	151	19	improved	improved	ADJ
bracis-28399	151	20	performance	performance	NOUN
bracis-28399	151	21	.	.	PUNCT
bracis-28399	152	1	during	during	ADP
bracis-28399	152	2	the	the	DET
bracis-28399	152	3	tuning	tuning	NOUN
bracis-28399	152	4	process	process	NOUN
bracis-28399	152	5	,	,	PUNCT
bracis-28399	152	6	tpe	tpe	NOUN
bracis-28399	152	7	samples	sample	NOUN
bracis-28399	152	8	hyperparameter	hyperparameter	NOUN
bracis-28399	152	9	configurations	configuration	NOUN
bracis-28399	152	10	based	base	VERB
bracis-28399	152	11	on	on	ADP
bracis-28399	152	12	its	its	PRON
bracis-28399	152	13	probability	probability	NOUN
bracis-28399	152	14	distributions	distribution	NOUN
bracis-28399	152	15	,	,	PUNCT
bracis-28399	152	16	evaluate	evaluate	VERB
bracis-28399	152	17	model	model	NOUN
bracis-28399	152	18	performance	performance	NOUN
bracis-28399	152	19	using	use	VERB
bracis-28399	152	20	cross	cross	NOUN
bracis-28399	152	21	-	-	NOUN
bracis-28399	152	22	validation	validation	NOUN
bracis-28399	152	23	and	and	CCONJ
bracis-28399	152	24	updates	update	VERB
bracis-28399	152	25	the	the	DET
bracis-28399	152	26	pdfs	pdfs	PROPN
bracis-28399	152	27	accordingly	accordingly	ADV
bracis-28399	152	28	.	.	PUNCT
bracis-28399	153	1	this	this	DET
bracis-28399	153	2	iterative	iterative	NOUN
bracis-28399	153	3	approach	approach	NOUN
bracis-28399	153	4	enables	enable	VERB
bracis-28399	153	5	the	the	DET
bracis-28399	153	6	algorithm	algorithm	NOUN
bracis-28399	153	7	to	to	PART
bracis-28399	153	8	explore	explore	VERB
bracis-28399	153	9	and	and	CCONJ
bracis-28399	153	10	refine	refine	VERB
bracis-28399	153	11	the	the	DET
bracis-28399	153	12	search	search	NOUN
bracis-28399	153	13	space	space	NOUN
bracis-28399	153	14	,	,	PUNCT
bracis-28399	153	15	ultimately	ultimately	ADV
bracis-28399	153	16	leading	lead	VERB
bracis-28399	153	17	to	to	ADP
bracis-28399	153	18	the	the	DET
bracis-28399	153	19	identification	identification	NOUN
bracis-28399	153	20	of	of	ADP
bracis-28399	153	21	hyperparameter	hyperparameter	NOUN
bracis-28399	153	22	configurations	configuration	NOUN
bracis-28399	153	23	that	that	PRON
bracis-28399	153	24	optimize	optimize	VERB
bracis-28399	153	25	model	model	NOUN
bracis-28399	153	26	performance	performance	NOUN
bracis-28399	153	27	.	.	PUNCT
bracis-28399	154	1	tpe	tpe	NOUN
bracis-28399	154	2	’s	’s	PART
bracis-28399	154	3	combination	combination	NOUN
bracis-28399	154	4	of	of	ADP
bracis-28399	154	5	exploration	exploration	NOUN
bracis-28399	154	6	and	and	CCONJ
bracis-28399	154	7	exploitation	exploitation	NOUN
bracis-28399	154	8	strategies	strategy	NOUN
bracis-28399	154	9	makes	make	VERB
bracis-28399	154	10	it	it	PRON
bracis-28399	154	11	a	a	DET
bracis-28399	154	12	powerful	powerful	ADJ
bracis-28399	154	13	tool	tool	NOUN
bracis-28399	154	14	for	for	ADP
bracis-28399	154	15	effectively	effectively	ADV
bracis-28399	154	16	and	and	CCONJ
bracis-28399	154	17	efficiently	efficiently	ADV
bracis-28399	154	18	optimizing	optimize	VERB
bracis-28399	154	19	machine	machine	NOUN
bracis-28399	154	20	learning	learning	NOUN
bracis-28399	154	21	models	model	NOUN
bracis-28399	154	22	.	.	PUNCT
bracis-28399	155	1	2.6	2.6	NUM
bracis-28399	155	2	ensemble	ensemble	ADJ
bracis-28399	155	3	methods	method	NOUN
bracis-28399	155	4	the	the	DET
bracis-28399	155	5	voting	voting	NOUN
bracis-28399	155	6	ensemble	ensemble	ADJ
bracis-28399	155	7	method	method	NOUN
bracis-28399	155	8	 	 	SPACE
bracis-28399	155	9	[	[	X
bracis-28399	155	10	23	23	NUM
bracis-28399	155	11	]	]	PUNCT
bracis-28399	155	12	combines	combine	VERB
bracis-28399	155	13	predictions	prediction	NOUN
bracis-28399	155	14	from	from	ADP
bracis-28399	155	15	multiple	multiple	ADJ
bracis-28399	155	16	individual	individual	ADJ
bracis-28399	155	17	models	model	NOUN
bracis-28399	155	18	to	to	PART
bracis-28399	155	19	make	make	VERB
bracis-28399	155	20	a	a	DET
bracis-28399	155	21	final	final	ADJ
bracis-28399	155	22	prediction	prediction	NOUN
bracis-28399	155	23	.	.	PUNCT
bracis-28399	156	1	it	it	PRON
bracis-28399	156	2	involves	involve	VERB
bracis-28399	156	3	aggregating	aggregate	VERB
bracis-28399	156	4	the	the	DET
bracis-28399	156	5	outputs	output	NOUN
bracis-28399	156	6	of	of	ADP
bracis-28399	156	7	different	different	ADJ
bracis-28399	156	8	models	model	NOUN
bracis-28399	156	9	,	,	PUNCT
bracis-28399	156	10	either	either	CCONJ
bracis-28399	156	11	by	by	ADP
bracis-28399	156	12	majority	majority	NOUN
bracis-28399	156	13	voting	voting	NOUN
bracis-28399	156	14	(	(	PUNCT
bracis-28399	156	15	for	for	ADP
bracis-28399	156	16	classification	classification	NOUN
bracis-28399	156	17	problems	problem	NOUN
bracis-28399	156	18	)	)	PUNCT
bracis-28399	156	19	or	or	CCONJ
bracis-28399	156	20	by	by	ADP
bracis-28399	156	21	averaging	average	VERB
bracis-28399	156	22	(	(	PUNCT
bracis-28399	156	23	for	for	ADP
bracis-28399	156	24	regression	regression	NOUN
bracis-28399	156	25	problems	problem	NOUN
bracis-28399	156	26	)	)	PUNCT
bracis-28399	156	27	.	.	PUNCT
bracis-28399	157	1	by	by	ADP
bracis-28399	157	2	combining	combine	VERB
bracis-28399	157	3	the	the	DET
bracis-28399	157	4	predictions	prediction	NOUN
bracis-28399	157	5	of	of	ADP
bracis-28399	157	6	multiple	multiple	ADJ
bracis-28399	157	7	models	model	NOUN
bracis-28399	157	8	,	,	PUNCT
bracis-28399	157	9	the	the	DET
bracis-28399	157	10	voting	voting	NOUN
bracis-28399	157	11	ensemble	ensemble	ADJ
bracis-28399	157	12	could	could	AUX
bracis-28399	157	13	enhance	enhance	VERB
bracis-28399	157	14	the	the	DET
bracis-28399	157	15	overall	overall	ADJ
bracis-28399	157	16	prediction	prediction	NOUN
bracis-28399	157	17	accuracy	accuracy	NOUN
bracis-28399	157	18	and	and	CCONJ
bracis-28399	157	19	robustness	robustness	NOUN
bracis-28399	157	20	.	.	PUNCT
bracis-28399	158	1	the	the	DET
bracis-28399	158	2	stacking	stack	VERB
bracis-28399	158	3	ensemble	ensemble	ADJ
bracis-28399	158	4	method	method	NOUN
bracis-28399	158	5	 	 	SPACE
bracis-28399	158	6	[	[	X
bracis-28399	158	7	32	32	NUM
bracis-28399	158	8	]	]	PUNCT
bracis-28399	158	9	leverages	leverage	VERB
bracis-28399	158	10	the	the	DET
bracis-28399	158	11	predictions	prediction	NOUN
bracis-28399	158	12	of	of	ADP
bracis-28399	158	13	multiple	multiple	ADJ
bracis-28399	158	14	base	base	NOUN
bracis-28399	158	15	models	model	NOUN
bracis-28399	158	16	to	to	PART
bracis-28399	158	17	train	train	VERB
bracis-28399	158	18	a	a	DET
bracis-28399	158	19	meta	meta	ADJ
bracis-28399	158	20	-	-	PUNCT
bracis-28399	158	21	model	model	NOUN
bracis-28399	158	22	,	,	PUNCT
bracis-28399	158	23	which	which	PRON
bracis-28399	158	24	learns	learn	VERB
bracis-28399	158	25	to	to	PART
bracis-28399	158	26	make	make	VERB
bracis-28399	158	27	predictions	prediction	NOUN
bracis-28399	158	28	based	base	VERB
bracis-28399	158	29	on	on	ADP
bracis-28399	158	30	the	the	DET
bracis-28399	158	31	outputs	output	NOUN
bracis-28399	158	32	of	of	ADP
bracis-28399	158	33	the	the	DET
bracis-28399	158	34	base	base	NOUN
bracis-28399	158	35	models	model	NOUN
bracis-28399	158	36	.	.	PUNCT
bracis-28399	159	1	the	the	DET
bracis-28399	159	2	predictions	prediction	NOUN
bracis-28399	159	3	,	,	PUNCT
bracis-28399	159	4	along	along	ADP
bracis-28399	159	5	with	with	ADP
bracis-28399	159	6	the	the	DET
bracis-28399	159	7	original	original	ADJ
bracis-28399	159	8	target	target	NOUN
bracis-28399	159	9	variable	variable	NOUN
bracis-28399	159	10	,	,	PUNCT
bracis-28399	159	11	are	be	AUX
bracis-28399	159	12	then	then	ADV
bracis-28399	159	13	used	use	VERB
bracis-28399	159	14	to	to	PART
bracis-28399	159	15	train	train	VERB
bracis-28399	159	16	a	a	DET
bracis-28399	159	17	meta	meta	ADJ
bracis-28399	159	18	-	-	PUNCT
bracis-28399	159	19	model	model	NOUN
bracis-28399	159	20	that	that	PRON
bracis-28399	159	21	learns	learn	VERB
bracis-28399	159	22	to	to	PART
bracis-28399	159	23	combine	combine	VERB
bracis-28399	159	24	the	the	DET
bracis-28399	159	25	base	base	NOUN
bracis-28399	159	26	models	model	NOUN
bracis-28399	159	27	’	'	PUNCT
bracis-28399	159	28	outputs	output	NOUN
bracis-28399	159	29	.	.	PUNCT
bracis-28399	160	1	the	the	DET
bracis-28399	160	2	stacking	stack	VERB
bracis-28399	160	3	ensemble	ensemble	ADJ
bracis-28399	160	4	can	can	AUX
bracis-28399	160	5	capture	capture	VERB
bracis-28399	160	6	complex	complex	ADJ
bracis-28399	160	7	interactions	interaction	NOUN
bracis-28399	160	8	among	among	ADP
bracis-28399	160	9	the	the	DET
bracis-28399	160	10	models	model	NOUN
bracis-28399	160	11	and	and	CCONJ
bracis-28399	160	12	exploit	exploit	VERB
bracis-28399	160	13	their	their	PRON
bracis-28399	160	14	complementary	complementary	ADJ
bracis-28399	160	15	strengths	strength	NOUN
bracis-28399	160	16	,	,	PUNCT
bracis-28399	160	17	leading	lead	VERB
bracis-28399	160	18	to	to	ADP
bracis-28399	160	19	improved	improve	VERB
bracis-28399	160	20	prediction	prediction	NOUN
bracis-28399	160	21	performance	performance	NOUN
bracis-28399	160	22	.	.	PUNCT
bracis-28399	161	1	3	3	NUM
bracis-28399	161	2	experiments	experiment	NOUN
bracis-28399	161	3	and	and	CCONJ
bracis-28399	161	4	 	 	SPACE
bracis-28399	161	5	results	result	NOUN
bracis-28399	161	6	in	in	ADP
bracis-28399	161	7	order	order	NOUN
bracis-28399	161	8	to	to	PART
bracis-28399	161	9	assess	assess	VERB
bracis-28399	161	10	the	the	DET
bracis-28399	161	11	performance	performance	NOUN
bracis-28399	161	12	of	of	ADP
bracis-28399	161	13	physicochemical	physicochemical	ADJ
bracis-28399	161	14	properties	property	NOUN
bracis-28399	161	15	in	in	ADP
bracis-28399	161	16	the	the	DET
bracis-28399	161	17	context	context	NOUN
bracis-28399	161	18	of	of	ADP
bracis-28399	161	19	promoter	promoter	NOUN
bracis-28399	161	20	prediction	prediction	NOUN
bracis-28399	161	21	,	,	PUNCT
bracis-28399	161	22	a	a	DET
bracis-28399	161	23	series	series	NOUN
bracis-28399	161	24	of	of	ADP
bracis-28399	161	25	experiments	experiment	NOUN
bracis-28399	161	26	were	be	AUX
bracis-28399	161	27	conducted	conduct	VERB
bracis-28399	161	28	.	.	PUNCT
bracis-28399	162	1	the	the	DET
bracis-28399	162	2	evaluation	evaluation	NOUN
bracis-28399	162	3	encompassed	encompass	VERB
bracis-28399	162	4	the	the	DET
bracis-28399	162	5	utilization	utilization	NOUN
bracis-28399	162	6	of	of	ADP
bracis-28399	162	7	individual	individual	ADJ
bracis-28399	162	8	properties	property	NOUN
bracis-28399	162	9	as	as	ADV
bracis-28399	162	10	well	well	ADV
bracis-28399	162	11	as	as	ADP
bracis-28399	162	12	combinations	combination	NOUN
bracis-28399	162	13	of	of	ADP
bracis-28399	162	14	the	the	DET
bracis-28399	162	15	most	most	ADV
bracis-28399	162	16	promising	promising	ADJ
bracis-28399	162	17	ones	one	NOUN
bracis-28399	162	18	across	across	ADP
bracis-28399	162	19	seven	seven	NUM
bracis-28399	162	20	diverse	diverse	ADJ
bracis-28399	162	21	datasets	dataset	NOUN
bracis-28399	162	22	representing	represent	VERB
bracis-28399	162	23	various	various	ADJ
bracis-28399	162	24	organism	organism	NOUN
bracis-28399	162	25	types	type	NOUN
bracis-28399	162	26	.	.	PUNCT
bracis-28399	163	1	to	to	PART
bracis-28399	163	2	ascertain	ascertain	VERB
bracis-28399	163	3	the	the	DET
bracis-28399	163	4	effectiveness	effectiveness	NOUN
bracis-28399	163	5	of	of	ADP
bracis-28399	163	6	the	the	DET
bracis-28399	163	7	proposed	propose	VERB
bracis-28399	163	8	methods	method	NOUN
bracis-28399	163	9	within	within	ADP
bracis-28399	163	10	the	the	DET
bracis-28399	163	11	domain	domain	NOUN
bracis-28399	163	12	of	of	ADP
bracis-28399	163	13	the	the	DET
bracis-28399	163	14	problem	problem	NOUN
bracis-28399	163	15	,	,	PUNCT
bracis-28399	163	16	the	the	DET
bracis-28399	163	17	obtained	obtain	VERB
bracis-28399	163	18	results	result	NOUN
bracis-28399	163	19	were	be	AUX
bracis-28399	163	20	compared	compare	VERB
bracis-28399	163	21	against	against	ADP
bracis-28399	163	22	a	a	DET
bracis-28399	163	23	baseline	baseline	NOUN
bracis-28399	163	24	that	that	PRON
bracis-28399	163	25	is	be	AUX
bracis-28399	163	26	regarded	regard	VERB
bracis-28399	163	27	as	as	ADP
bracis-28399	163	28	state	state	NOUN
bracis-28399	163	29	-	-	PUNCT
bracis-28399	163	30	of	of	ADP
bracis-28399	163	31	-	-	PUNCT
bracis-28399	163	32	the	the	DET
bracis-28399	163	33	-	-	PUNCT
bracis-28399	163	34	art	art	NOUN
bracis-28399	163	35	on	on	ADP
bracis-28399	163	36	these	these	DET
bracis-28399	163	37	specific	specific	ADJ
bracis-28399	163	38	datasets	dataset	NOUN
bracis-28399	163	39	.	.	PUNCT
bracis-28399	164	1	3.1	3.1	NUM
bracis-28399	164	2	experiment	experiment	NOUN
bracis-28399	164	3	workflow	workflow	NOUN
bracis-28399	164	4	the	the	DET
bracis-28399	164	5	implemented	implemented	ADJ
bracis-28399	164	6	processing	processing	NOUN
bracis-28399	164	7	workflow	workflow	NOUN
bracis-28399	164	8	encompasses	encompass	VERB
bracis-28399	164	9	the	the	DET
bracis-28399	164	10	transformation	transformation	NOUN
bracis-28399	164	11	of	of	ADP
bracis-28399	164	12	raw	raw	ADJ
bracis-28399	164	13	dna	dna	NOUN
bracis-28399	164	14	sequences	sequence	NOUN
bracis-28399	164	15	within	within	ADP
bracis-28399	164	16	a	a	DET
bracis-28399	164	17	given	give	VERB
bracis-28399	164	18	dataset	dataset	NOUN
bracis-28399	164	19	into	into	ADP
bracis-28399	164	20	physicochemical	physicochemical	ADJ
bracis-28399	164	21	property	property	NOUN
bracis-28399	164	22	values	value	NOUN
bracis-28399	164	23	.	.	PUNCT
bracis-28399	165	1	subsequently	subsequently	ADV
bracis-28399	165	2	,	,	PUNCT
bracis-28399	165	3	one	one	NUM
bracis-28399	165	4	or	or	CCONJ
bracis-28399	165	5	more	more	ADJ
bracis-28399	165	6	properties	property	NOUN
bracis-28399	165	7	are	be	AUX
bracis-28399	165	8	selected	select	VERB
bracis-28399	165	9	,	,	PUNCT
bracis-28399	165	10	and	and	CCONJ
bracis-28399	165	11	their	their	PRON
bracis-28399	165	12	corresponding	correspond	VERB
bracis-28399	165	13	values	value	NOUN
bracis-28399	165	14	are	be	AUX
bracis-28399	165	15	concatenated	concatenate	VERB
bracis-28399	165	16	to	to	PART
bracis-28399	165	17	form	form	VERB
bracis-28399	165	18	the	the	DET
bracis-28399	165	19	feature	feature	NOUN
bracis-28399	165	20	set	set	VERB
bracis-28399	165	21	.	.	PUNCT
bracis-28399	166	1	the	the	DET
bracis-28399	166	2	evaluation	evaluation	NOUN
bracis-28399	166	3	process	process	NOUN
bracis-28399	166	4	involves	involve	VERB
bracis-28399	166	5	a	a	DET
bracis-28399	166	6	5	5	NUM
bracis-28399	166	7	-	-	ADJ
bracis-28399	166	8	fold	fold	ADJ
bracis-28399	166	9	cross	cross	NOUN
bracis-28399	166	10	-	-	NOUN
bracis-28399	166	11	validation	validation	NOUN
bracis-28399	166	12	,	,	PUNCT
bracis-28399	166	13	which	which	PRON
bracis-28399	166	14	partitions	partition	VERB
bracis-28399	166	15	the	the	DET
bracis-28399	166	16	dataset	dataset	NOUN
bracis-28399	166	17	into	into	ADP
bracis-28399	166	18	training	training	NOUN
bracis-28399	166	19	and	and	CCONJ
bracis-28399	166	20	test	test	NOUN
bracis-28399	166	21	subsets	subset	NOUN
bracis-28399	166	22	.	.	PUNCT
bracis-28399	167	1	within	within	ADP
bracis-28399	167	2	the	the	DET
bracis-28399	167	3	training	training	NOUN
bracis-28399	167	4	subset	subset	NOUN
bracis-28399	167	5	,	,	PUNCT
bracis-28399	167	6	a	a	DET
bracis-28399	167	7	further	further	ADJ
bracis-28399	167	8	5	5	NUM
bracis-28399	167	9	-	-	ADJ
bracis-28399	167	10	fold	fold	ADJ
bracis-28399	167	11	cross	cross	NOUN
bracis-28399	167	12	-	-	ADJ
bracis-28399	167	13	validation	validation	NOUN
bracis-28399	167	14	is	be	AUX
bracis-28399	167	15	conducted	conduct	VERB
bracis-28399	167	16	to	to	PART
bracis-28399	167	17	compare	compare	VERB
bracis-28399	167	18	various	various	ADJ
bracis-28399	167	19	machine	machine	NOUN
bracis-28399	167	20	learning	learn	VERB
bracis-28399	167	21	methods	method	NOUN
bracis-28399	167	22	and	and	CCONJ
bracis-28399	167	23	identify	identify	VERB
bracis-28399	167	24	the	the	DET
bracis-28399	167	25	optimal	optimal	ADJ
bracis-28399	167	26	one	one	NOUN
bracis-28399	167	27	for	for	ADP
bracis-28399	167	28	hyperparameter	hyperparameter	NOUN
bracis-28399	167	29	tuning	tuning	NOUN
bracis-28399	167	30	.	.	PUNCT
bracis-28399	168	1	finally	finally	ADV
bracis-28399	168	2	,	,	PUNCT
bracis-28399	168	3	the	the	DET
bracis-28399	168	4	tuned	tune	VERB
bracis-28399	168	5	model	model	NOUN
bracis-28399	168	6	is	be	AUX
bracis-28399	168	7	evaluated	evaluate	VERB
bracis-28399	168	8	using	use	VERB
bracis-28399	168	9	the	the	DET
bracis-28399	168	10	test	test	NOUN
bracis-28399	168	11	dataset	dataset	VERB
bracis-28399	168	12	.	.	PUNCT
bracis-28399	169	1	to	to	PART
bracis-28399	169	2	conduct	conduct	VERB
bracis-28399	169	3	our	our	PRON
bracis-28399	169	4	experiments	experiment	NOUN
bracis-28399	169	5	,	,	PUNCT
bracis-28399	169	6	we	we	PRON
bracis-28399	169	7	utilized	utilize	VERB
bracis-28399	169	8	pycaret	pycaret	VERB
bracis-28399	169	9	3footnote	3footnote	NUM
bracis-28399	169	10	2	2	NUM
bracis-28399	169	11	,	,	PUNCT
bracis-28399	169	12	an	an	DET
bracis-28399	169	13	advanced	advanced	ADJ
bracis-28399	169	14	machine	machine	NOUN
bracis-28399	169	15	learning	learn	VERB
bracis-28399	169	16	library	library	NOUN
bracis-28399	169	17	.	.	PUNCT
bracis-28399	170	1	pycaret	pycaret	PROPN
bracis-28399	170	2	offers	offer	VERB
bracis-28399	170	3	a	a	DET
bracis-28399	170	4	comprehensive	comprehensive	ADJ
bracis-28399	170	5	range	range	NOUN
bracis-28399	170	6	of	of	ADP
bracis-28399	170	7	eighteen	eighteen	NUM
bracis-28399	170	8	classification	classification	NOUN
bracis-28399	170	9	methods	method	NOUN
bracis-28399	170	10	,	,	PUNCT
bracis-28399	170	11	which	which	PRON
bracis-28399	170	12	were	be	AUX
bracis-28399	170	13	employed	employ	VERB
bracis-28399	170	14	in	in	ADP
bracis-28399	170	15	our	our	PRON
bracis-28399	170	16	study	study	NOUN
bracis-28399	170	17	(	(	PUNCT
bracis-28399	170	18	table	table	NOUN
bracis-28399	170	19	 	 	SPACE
bracis-28399	170	20	2	2	NUM
bracis-28399	170	21	)	)	PUNCT
bracis-28399	170	22	.	.	PUNCT
bracis-28399	171	1	3.2	3.2	NUM
bracis-28399	171	2	individual	individual	ADJ
bracis-28399	171	3	properties	property	NOUN
bracis-28399	171	4	’	'	PUNCT
bracis-28399	171	5	performances	performance	NOUN
bracis-28399	171	6	table	table	NOUN
bracis-28399	171	7	2	2	NUM
bracis-28399	171	8	.	.	PUNCT
bracis-28399	172	1	metrics	metric	NOUN
bracis-28399	172	2	results	result	NOUN
bracis-28399	172	3	of	of	ADP
bracis-28399	172	4	the	the	DET
bracis-28399	172	5	best	good	ADJ
bracis-28399	172	6	models	model	NOUN
bracis-28399	172	7	with	with	ADP
bracis-28399	172	8	only	only	ADV
bracis-28399	172	9	one	one	NUM
bracis-28399	172	10	property	property	NOUN
bracis-28399	172	11	.	.	PUNCT
bracis-28399	173	1	we	we	PRON
bracis-28399	173	2	show	show	VERB
bracis-28399	173	3	the	the	DET
bracis-28399	173	4	property	property	NOUN
bracis-28399	173	5	and	and	CCONJ
bracis-28399	173	6	the	the	DET
bracis-28399	173	7	results	result	NOUN
bracis-28399	173	8	of	of	ADP
bracis-28399	173	9	the	the	DET
bracis-28399	173	10	evaluated	evaluated	ADJ
bracis-28399	173	11	model	model	NOUN
bracis-28399	173	12	in	in	ADP
bracis-28399	173	13	each	each	DET
bracis-28399	173	14	dataset.full	dataset.full	PROPN
bracis-28399	173	15	size	size	NOUN
bracis-28399	173	16	table	table	NOUN
bracis-28399	173	17	using	use	VERB
bracis-28399	173	18	the	the	DET
bracis-28399	173	19	5	5	NUM
bracis-28399	173	20	-	-	ADJ
bracis-28399	173	21	fold	fold	ADJ
bracis-28399	173	22	cross	cross	ADJ
bracis-28399	173	23	-	-	ADJ
bracis-28399	173	24	validation	validation	ADJ
bracis-28399	173	25	method	method	NOUN
bracis-28399	173	26	,	,	PUNCT
bracis-28399	173	27	we	we	PRON
bracis-28399	173	28	compared	compare	VERB
bracis-28399	173	29	several	several	ADJ
bracis-28399	173	30	machine	machine	NOUN
bracis-28399	173	31	learning	learning	NOUN
bracis-28399	173	32	models	model	NOUN
bracis-28399	173	33	to	to	PART
bracis-28399	173	34	observe	observe	VERB
bracis-28399	173	35	the	the	DET
bracis-28399	173	36	prediction	prediction	NOUN
bracis-28399	173	37	power	power	NOUN
bracis-28399	173	38	of	of	ADP
bracis-28399	173	39	each	each	DET
bracis-28399	173	40	physicochemical	physicochemical	ADJ
bracis-28399	173	41	property	property	NOUN
bracis-28399	173	42	.	.	PUNCT
bracis-28399	174	1	then	then	ADV
bracis-28399	174	2	,	,	PUNCT
bracis-28399	174	3	we	we	PRON
bracis-28399	174	4	chose	choose	VERB
bracis-28399	174	5	the	the	DET
bracis-28399	174	6	best	good	ADJ
bracis-28399	174	7	one	one	NUM
bracis-28399	174	8	that	that	PRON
bracis-28399	174	9	uses	use	VERB
bracis-28399	174	10	that	that	DET
bracis-28399	174	11	property	property	NOUN
bracis-28399	174	12	.	.	PUNCT
bracis-28399	175	1	after	after	ADP
bracis-28399	175	2	,	,	PUNCT
bracis-28399	175	3	we	we	PRON
bracis-28399	175	4	tuned	tune	VERB
bracis-28399	175	5	the	the	DET
bracis-28399	175	6	hyperparameters	hyperparameter	NOUN
bracis-28399	175	7	of	of	ADP
bracis-28399	175	8	the	the	DET
bracis-28399	175	9	selected	select	VERB
bracis-28399	175	10	models	model	NOUN
bracis-28399	175	11	using	use	VERB
bracis-28399	175	12	the	the	DET
bracis-28399	175	13	same	same	ADJ
bracis-28399	175	14	training	training	NOUN
bracis-28399	175	15	data	datum	NOUN
bracis-28399	175	16	and	and	CCONJ
bracis-28399	175	17	the	the	DET
bracis-28399	175	18	5	5	NUM
bracis-28399	175	19	-	-	ADJ
bracis-28399	175	20	fold	fold	ADJ
bracis-28399	175	21	cross	cross	NOUN
bracis-28399	175	22	-	-	NOUN
bracis-28399	175	23	validation	validation	ADJ
bracis-28399	175	24	.	.	PUNCT
bracis-28399	176	1	figure	figure	NOUN
bracis-28399	176	2	 	 	SPACE
bracis-28399	176	3	4	4	NUM
bracis-28399	176	4	presents	present	VERB
bracis-28399	176	5	the	the	DET
bracis-28399	176	6	results	result	NOUN
bracis-28399	176	7	from	from	ADP
bracis-28399	176	8	the	the	DET
bracis-28399	176	9	tuned	tune	VERB
bracis-28399	176	10	models	model	NOUN
bracis-28399	176	11	.	.	PUNCT
bracis-28399	177	1	the	the	DET
bracis-28399	177	2	bars	bar	NOUN
bracis-28399	177	3	show	show	VERB
bracis-28399	177	4	the	the	DET
bracis-28399	177	5	mcc	mcc	PROPN
bracis-28399	177	6	scores	score	NOUN
bracis-28399	177	7	’	'	PUNCT
bracis-28399	177	8	maximum	maximum	ADJ
bracis-28399	177	9	,	,	PUNCT
bracis-28399	177	10	minimum	minimum	ADJ
bracis-28399	177	11	,	,	PUNCT
bracis-28399	177	12	and	and	CCONJ
bracis-28399	177	13	average	average	ADJ
bracis-28399	177	14	from	from	ADP
bracis-28399	177	15	evaluating	evaluate	VERB
bracis-28399	177	16	these	these	DET
bracis-28399	177	17	models	model	NOUN
bracis-28399	177	18	.	.	PUNCT
bracis-28399	178	1	each	each	DET
bracis-28399	178	2	dataset	dataset	NOUN
bracis-28399	178	3	has	have	VERB
bracis-28399	178	4	fifty	fifty	NUM
bracis-28399	178	5	models	model	NOUN
bracis-28399	178	6	,	,	PUNCT
bracis-28399	178	7	one	one	NUM
bracis-28399	178	8	for	for	ADP
bracis-28399	178	9	each	each	DET
bracis-28399	178	10	property	property	NOUN
bracis-28399	178	11	,	,	PUNCT
bracis-28399	178	12	among	among	ADP
bracis-28399	178	13	dinucleotides	dinucleotide	NOUN
bracis-28399	178	14	and	and	CCONJ
bracis-28399	178	15	trinucleotides	trinucleotide	NOUN
bracis-28399	178	16	.	.	PUNCT
bracis-28399	179	1	the	the	DET
bracis-28399	179	2	graph	graph	NOUN
bracis-28399	179	3	suggests	suggest	VERB
bracis-28399	179	4	that	that	SCONJ
bracis-28399	179	5	the	the	DET
bracis-28399	179	6	models	model	NOUN
bracis-28399	179	7	trained	train	VERB
bracis-28399	179	8	on	on	ADP
bracis-28399	179	9	prokaryotic	prokaryotic	ADJ
bracis-28399	179	10	datasets	dataset	NOUN
bracis-28399	179	11	get	get	VERB
bracis-28399	179	12	worse	bad	ADJ
bracis-28399	179	13	results	result	NOUN
bracis-28399	179	14	than	than	ADP
bracis-28399	179	15	those	those	PRON
bracis-28399	179	16	from	from	ADP
bracis-28399	179	17	the	the	DET
bracis-28399	179	18	eukaryotic	eukaryotic	ADJ
bracis-28399	179	19	datasets	dataset	NOUN
bracis-28399	179	20	.	.	PUNCT
bracis-28399	180	1	the	the	DET
bracis-28399	180	2	labels	label	NOUN
bracis-28399	180	3	on	on	ADP
bracis-28399	180	4	the	the	DET
bracis-28399	180	5	x	x	NOUN
bracis-28399	180	6	-	-	NOUN
bracis-28399	180	7	axis	axis	NOUN
bracis-28399	180	8	of	of	ADP
bracis-28399	180	9	the	the	DET
bracis-28399	180	10	graph	graph	NOUN
bracis-28399	180	11	refer	refer	VERB
bracis-28399	180	12	to	to	ADP
bracis-28399	180	13	table	table	NOUN
bracis-28399	180	14	 	 	SPACE
bracis-28399	180	15	1	1	NUM
bracis-28399	180	16	.	.	PUNCT
bracis-28399	181	1	although	although	SCONJ
bracis-28399	181	2	we	we	PRON
bracis-28399	181	3	tested	test	VERB
bracis-28399	181	4	eighteen	eighteen	NUM
bracis-28399	181	5	different	different	ADJ
bracis-28399	181	6	models	model	NOUN
bracis-28399	181	7	,	,	PUNCT
bracis-28399	181	8	all	all	DET
bracis-28399	181	9	the	the	DET
bracis-28399	181	10	best	good	ADJ
bracis-28399	181	11	models	model	NOUN
bracis-28399	181	12	were	be	AUX
bracis-28399	181	13	the	the	DET
bracis-28399	181	14	light	light	ADJ
bracis-28399	181	15	gradient	gradient	NOUN
bracis-28399	181	16	boosting	boost	VERB
bracis-28399	181	17	machine	machine	NOUN
bracis-28399	181	18	.	.	PUNCT
bracis-28399	182	1	fig	fig	NOUN
bracis-28399	182	2	.	.	PUNCT
bracis-28399	183	1	4	4	X
bracis-28399	183	2	.	.	X
bracis-28399	183	3	mcc	mcc	NOUN
bracis-28399	183	4	scores	score	NOUN
bracis-28399	183	5	(	(	PUNCT
bracis-28399	183	6	y	y	NOUN
bracis-28399	183	7	-	-	PUNCT
bracis-28399	183	8	axis	axis	NOUN
bracis-28399	183	9	)	)	PUNCT
bracis-28399	183	10	from	from	ADP
bracis-28399	183	11	5	5	NUM
bracis-28399	183	12	-	-	ADJ
bracis-28399	183	13	fold	fold	ADJ
bracis-28399	183	14	cross	cross	NOUN
bracis-28399	183	15	-	-	NOUN
bracis-28399	183	16	validation	validation	NOUN
bracis-28399	183	17	of	of	ADP
bracis-28399	183	18	each	each	DET
bracis-28399	183	19	physicochemical	physicochemical	ADJ
bracis-28399	183	20	property	property	NOUN
bracis-28399	183	21	(	(	PUNCT
bracis-28399	183	22	x	x	NOUN
bracis-28399	183	23	-	-	ADJ
bracis-28399	183	24	axis	axis	ADJ
bracis-28399	183	25	)	)	PUNCT
bracis-28399	183	26	model	model	NOUN
bracis-28399	183	27	evaluated	evaluate	VERB
bracis-28399	183	28	on	on	ADP
bracis-28399	183	29	the	the	DET
bracis-28399	183	30	training	training	NOUN
bracis-28399	183	31	subset	subset	NOUN
bracis-28399	183	32	for	for	ADP
bracis-28399	183	33	each	each	DET
bracis-28399	183	34	dataset	dataset	NOUN
bracis-28399	183	35	.	.	PUNCT
bracis-28399	184	1	the	the	DET
bracis-28399	184	2	graph	graph	NOUN
bracis-28399	184	3	shows	show	VERB
bracis-28399	184	4	the	the	DET
bracis-28399	184	5	maximum	maximum	ADJ
bracis-28399	184	6	,	,	PUNCT
bracis-28399	184	7	minimum	minimum	ADJ
bracis-28399	184	8	,	,	PUNCT
bracis-28399	184	9	and	and	CCONJ
bracis-28399	184	10	average	average	ADJ
bracis-28399	184	11	computed	compute	VERB
bracis-28399	184	12	scores	score	NOUN
bracis-28399	184	13	.	.	PUNCT
bracis-28399	185	1	full	full	ADJ
bracis-28399	185	2	size	size	NOUN
bracis-28399	185	3	image	image	NOUN
bracis-28399	185	4	3.3	3.3	NUM
bracis-28399	185	5	performance	performance	NOUN
bracis-28399	185	6	comparisons	comparison	NOUN
bracis-28399	185	7	we	we	PRON
bracis-28399	185	8	utilized	utilize	VERB
bracis-28399	185	9	cnnprom	cnnprom	NOUN
bracis-28399	185	10	 	 	SPACE
bracis-28399	186	1	[	[	X
bracis-28399	186	2	30	30	NUM
bracis-28399	186	3	]	]	PUNCT
bracis-28399	186	4	and	and	CCONJ
bracis-28399	186	5	mcc	mcc	PROPN
bracis-28399	186	6	scores	score	NOUN
bracis-28399	186	7	baseline	baseline	VERB
bracis-28399	186	8	for	for	ADP
bracis-28399	186	9	comparing	compare	VERB
bracis-28399	186	10	the	the	DET
bracis-28399	186	11	performance	performance	NOUN
bracis-28399	186	12	of	of	ADP
bracis-28399	186	13	the	the	DET
bracis-28399	186	14	models	model	NOUN
bracis-28399	186	15	under	under	ADP
bracis-28399	186	16	evaluation	evaluation	NOUN
bracis-28399	186	17	,	,	PUNCT
bracis-28399	186	18	given	give	VERB
bracis-28399	186	19	our	our	PRON
bracis-28399	186	20	belief	belief	NOUN
bracis-28399	186	21	that	that	SCONJ
bracis-28399	186	22	it	it	PRON
bracis-28399	186	23	represents	represent	VERB
bracis-28399	186	24	the	the	DET
bracis-28399	186	25	state	state	NOUN
bracis-28399	186	26	-	-	PUNCT
bracis-28399	186	27	of	of	ADP
bracis-28399	186	28	-	-	PUNCT
bracis-28399	186	29	the	the	DET
bracis-28399	186	30	-	-	PUNCT
bracis-28399	186	31	art	art	NOUN
bracis-28399	186	32	solution	solution	NOUN
bracis-28399	186	33	for	for	ADP
bracis-28399	186	34	this	this	DET
bracis-28399	186	35	problem	problem	NOUN
bracis-28399	186	36	.	.	PUNCT
bracis-28399	187	1	the	the	DET
bracis-28399	187	2	corresponding	corresponding	ADJ
bracis-28399	187	3	results	result	NOUN
bracis-28399	187	4	can	can	AUX
bracis-28399	187	5	be	be	AUX
bracis-28399	187	6	found	find	VERB
bracis-28399	187	7	in	in	ADP
bracis-28399	187	8	table	table	NOUN
bracis-28399	187	9	 	 	SPACE
bracis-28399	187	10	3	3	NUM
bracis-28399	187	11	.	.	PUNCT
bracis-28399	188	1	the	the	DET
bracis-28399	188	2	scores	score	NOUN
bracis-28399	188	3	attributed	attribute	VERB
bracis-28399	188	4	to	to	ADP
bracis-28399	188	5	cnnprom	cnnprom	NOUN
bracis-28399	188	6	are	be	AUX
bracis-28399	188	7	as	as	SCONJ
bracis-28399	188	8	reported	report	VERB
bracis-28399	188	9	by	by	ADP
bracis-28399	188	10	its	its	PRON
bracis-28399	188	11	authors	author	NOUN
bracis-28399	188	12	.	.	PUNCT
bracis-28399	189	1	columns	column	NOUN
bracis-28399	189	2	labeled	label	VERB
bracis-28399	189	3	as	as	ADP
bracis-28399	189	4	“	"	PUNCT
bracis-28399	189	5	single	single	ADJ
bracis-28399	189	6	”	"	PUNCT
bracis-28399	189	7	denote	denote	VERB
bracis-28399	189	8	the	the	DET
bracis-28399	189	9	best	well	ADV
bracis-28399	189	10	-	-	PUNCT
bracis-28399	189	11	performing	perform	VERB
bracis-28399	189	12	individual	individual	ADJ
bracis-28399	189	13	property	property	NOUN
bracis-28399	189	14	model	model	NOUN
bracis-28399	189	15	.	.	PUNCT
bracis-28399	190	1	the	the	DET
bracis-28399	190	2	columns	column	NOUN
bracis-28399	190	3	“	"	PUNCT
bracis-28399	190	4	vote5	vote5	PROPN
bracis-28399	190	5	”	"	PUNCT
bracis-28399	190	6	,	,	PUNCT
bracis-28399	190	7	“	"	PUNCT
bracis-28399	190	8	vote10	vote10	NOUN
bracis-28399	190	9	”	"	PUNCT
bracis-28399	190	10	,	,	PUNCT
bracis-28399	190	11	“	"	PUNCT
bracis-28399	190	12	stack5	stack5	PROPN
bracis-28399	190	13	”	"	PUNCT
bracis-28399	190	14	,	,	PUNCT
bracis-28399	190	15	and	and	CCONJ
bracis-28399	190	16	“	"	PUNCT
bracis-28399	190	17	stack10	stack10	NOUN
bracis-28399	190	18	”	"	PUNCT
bracis-28399	190	19	represent	represent	VERB
bracis-28399	190	20	results	result	NOUN
bracis-28399	190	21	from	from	ADP
bracis-28399	190	22	ensemble	ensemble	ADJ
bracis-28399	190	23	models	model	NOUN
bracis-28399	190	24	that	that	PRON
bracis-28399	190	25	employed	employ	VERB
bracis-28399	190	26	either	either	CCONJ
bracis-28399	190	27	the	the	DET
bracis-28399	190	28	voting	voting	NOUN
bracis-28399	190	29	or	or	CCONJ
bracis-28399	190	30	stacking	stacking	NOUN
bracis-28399	190	31	method	method	NOUN
bracis-28399	190	32	,	,	PUNCT
bracis-28399	190	33	incorporating	incorporate	VERB
bracis-28399	190	34	the	the	DET
bracis-28399	190	35	top	top	ADJ
bracis-28399	190	36	5	5	NUM
bracis-28399	190	37	or	or	CCONJ
bracis-28399	190	38	10	10	NUM
bracis-28399	190	39	properties	property	NOUN
bracis-28399	190	40	,	,	PUNCT
bracis-28399	190	41	respectively	respectively	ADV
bracis-28399	190	42	.	.	PUNCT
bracis-28399	191	1	the	the	DET
bracis-28399	191	2	performance	performance	NOUN
bracis-28399	191	3	of	of	ADP
bracis-28399	191	4	the	the	DET
bracis-28399	191	5	“	"	PUNCT
bracis-28399	191	6	single	single	ADJ
bracis-28399	191	7	”	"	PUNCT
bracis-28399	191	8	model	model	NOUN
bracis-28399	191	9	demonstrated	demonstrate	VERB
bracis-28399	191	10	relatively	relatively	ADV
bracis-28399	191	11	lower	low	ADJ
bracis-28399	191	12	average	average	ADJ
bracis-28399	191	13	results	result	NOUN
bracis-28399	191	14	when	when	SCONJ
bracis-28399	191	15	compared	compare	VERB
bracis-28399	191	16	with	with	ADP
bracis-28399	191	17	other	other	ADJ
bracis-28399	191	18	models	model	NOUN
bracis-28399	191	19	.	.	PUNCT
bracis-28399	192	1	interestingly	interestingly	ADV
bracis-28399	192	2	,	,	PUNCT
bracis-28399	192	3	the	the	DET
bracis-28399	192	4	outcomes	outcome	NOUN
bracis-28399	192	5	derived	derive	VERB
bracis-28399	192	6	from	from	ADP
bracis-28399	192	7	the	the	DET
bracis-28399	192	8	ensemble	ensemble	ADJ
bracis-28399	192	9	models	model	NOUN
bracis-28399	192	10	did	do	AUX
bracis-28399	192	11	not	not	PART
bracis-28399	192	12	exhibit	exhibit	VERB
bracis-28399	192	13	a	a	DET
bracis-28399	192	14	significant	significant	ADJ
bracis-28399	192	15	discrepancy	discrepancy	NOUN
bracis-28399	192	16	whether	whether	SCONJ
bracis-28399	192	17	they	they	PRON
bracis-28399	192	18	incorporated	incorporate	VERB
bracis-28399	192	19	the	the	DET
bracis-28399	192	20	top	top	ADJ
bracis-28399	192	21	5	5	NUM
bracis-28399	192	22	or	or	CCONJ
bracis-28399	192	23	10	10	NUM
bracis-28399	192	24	properties	property	NOUN
bracis-28399	192	25	,	,	PUNCT
bracis-28399	192	26	insinuating	insinuate	VERB
bracis-28399	192	27	that	that	SCONJ
bracis-28399	192	28	an	an	DET
bracis-28399	192	29	increased	increase	VERB
bracis-28399	192	30	number	number	NOUN
bracis-28399	192	31	of	of	ADP
bracis-28399	192	32	properties	property	NOUN
bracis-28399	192	33	does	do	AUX
bracis-28399	192	34	not	not	PART
bracis-28399	192	35	substantially	substantially	ADV
bracis-28399	192	36	enhance	enhance	VERB
bracis-28399	192	37	the	the	DET
bracis-28399	192	38	final	final	ADJ
bracis-28399	192	39	model	model	NOUN
bracis-28399	192	40	’s	’s	PART
bracis-28399	192	41	efficacy	efficacy	NOUN
bracis-28399	192	42	.	.	PUNCT
bracis-28399	193	1	likewise	likewise	ADV
bracis-28399	193	2	,	,	PUNCT
bracis-28399	193	3	no	no	DET
bracis-28399	193	4	notable	notable	ADJ
bracis-28399	193	5	divergence	divergence	NOUN
bracis-28399	193	6	was	be	AUX
bracis-28399	193	7	observed	observe	VERB
bracis-28399	193	8	between	between	ADP
bracis-28399	193	9	the	the	DET
bracis-28399	193	10	“	"	PUNCT
bracis-28399	193	11	vote	vote	NOUN
bracis-28399	193	12	”	"	PUNCT
bracis-28399	193	13	and	and	CCONJ
bracis-28399	193	14	“	"	PUNCT
bracis-28399	193	15	stack	stack	VERB
bracis-28399	193	16	”	"	PUNCT
bracis-28399	193	17	ensemble	ensemble	ADJ
bracis-28399	193	18	methodologies	methodology	NOUN
bracis-28399	193	19	.	.	PUNCT
bracis-28399	194	1	when	when	SCONJ
bracis-28399	194	2	comparing	compare	VERB
bracis-28399	194	3	the	the	DET
bracis-28399	194	4	investigated	investigate	VERB
bracis-28399	194	5	models	model	NOUN
bracis-28399	194	6	to	to	ADP
bracis-28399	194	7	the	the	DET
bracis-28399	194	8	baseline	baseline	PROPN
bracis-28399	194	9	model	model	NOUN
bracis-28399	194	10	cnnprom	cnnprom	NOUN
bracis-28399	194	11	,	,	PUNCT
bracis-28399	194	12	we	we	PRON
bracis-28399	194	13	observed	observe	VERB
bracis-28399	194	14	similar	similar	ADJ
bracis-28399	194	15	performance	performance	NOUN
bracis-28399	194	16	in	in	ADP
bracis-28399	194	17	3	3	NUM
bracis-28399	194	18	out	out	ADP
bracis-28399	194	19	of	of	ADP
bracis-28399	194	20	7	7	NUM
bracis-28399	194	21	datasets	dataset	NOUN
bracis-28399	194	22	.	.	PUNCT
bracis-28399	195	1	specifically	specifically	ADV
bracis-28399	195	2	,	,	PUNCT
bracis-28399	195	3	in	in	ADP
bracis-28399	195	4	the	the	DET
bracis-28399	195	5	arabidopsis_non_tata	arabidopsis_non_tata	PROPN
bracis-28399	195	6	dataset	dataset	NOUN
bracis-28399	195	7	,	,	PUNCT
bracis-28399	195	8	our	our	PRON
bracis-28399	195	9	model	model	NOUN
bracis-28399	195	10	exhibited	exhibit	VERB
bracis-28399	195	11	a	a	DET
bracis-28399	195	12	marginally	marginally	ADV
bracis-28399	195	13	lower	low	ADJ
bracis-28399	195	14	performance	performance	NOUN
bracis-28399	195	15	by	by	ADP
bracis-28399	195	16	\(1\%\	\(1\%\	VERB
bracis-28399	195	17	)	)	PUNCT
bracis-28399	195	18	compared	compare	VERB
bracis-28399	195	19	to	to	AUX
bracis-28399	195	20	cnnprom	cnnprom	VERB
bracis-28399	195	21	.	.	PUNCT
bracis-28399	196	1	conversely	conversely	ADV
bracis-28399	196	2	,	,	PUNCT
bracis-28399	196	3	in	in	ADP
bracis-28399	196	4	the	the	DET
bracis-28399	196	5	arabidopsis_tata	arabidopsis_tata	ADJ
bracis-28399	196	6	dataset	dataset	NOUN
bracis-28399	196	7	,	,	PUNCT
bracis-28399	196	8	our	our	PRON
bracis-28399	196	9	model	model	NOUN
bracis-28399	196	10	achieved	achieve	VERB
bracis-28399	196	11	a	a	DET
bracis-28399	196	12	slightly	slightly	ADV
bracis-28399	196	13	higher	high	ADJ
bracis-28399	196	14	performance	performance	NOUN
bracis-28399	196	15	by	by	ADP
bracis-28399	196	16	\(1\%\	\(1\%\	NOUN
bracis-28399	196	17	)	)	PUNCT
bracis-28399	196	18	in	in	ADP
bracis-28399	196	19	comparison	comparison	NOUN
bracis-28399	196	20	.	.	PUNCT
bracis-28399	197	1	in	in	ADP
bracis-28399	197	2	addition	addition	NOUN
bracis-28399	197	3	,	,	PUNCT
bracis-28399	197	4	the	the	DET
bracis-28399	197	5	results	result	NOUN
bracis-28399	197	6	for	for	ADP
bracis-28399	197	7	the	the	DET
bracis-28399	197	8	mouse_non_tata	mouse_non_tata	NOUN
bracis-28399	197	9	dataset	dataset	NOUN
bracis-28399	197	10	were	be	AUX
bracis-28399	197	11	equivalent	equivalent	ADJ
bracis-28399	197	12	to	to	ADP
bracis-28399	197	13	the	the	DET
bracis-28399	197	14	baseline	baseline	PROPN
bracis-28399	197	15	model	model	NOUN
bracis-28399	197	16	.	.	PUNCT
bracis-28399	198	1	however	however	ADV
bracis-28399	198	2	,	,	PUNCT
bracis-28399	198	3	in	in	ADP
bracis-28399	198	4	the	the	DET
bracis-28399	198	5	bacillus	bacillus	NOUN
bracis-28399	198	6	subtilis	subtili	NOUN
bracis-28399	198	7	,	,	PUNCT
bracis-28399	198	8	escherichia	escherichia	NOUN
bracis-28399	198	9	coli	coli	NOUN
bracis-28399	198	10	s70	s70	NOUN
bracis-28399	198	11	(	(	PUNCT
bracis-28399	198	12	procaryotes	procaryote	NOUN
bracis-28399	198	13	)	)	PUNCT
bracis-28399	198	14	,	,	PUNCT
bracis-28399	198	15	and	and	CCONJ
bracis-28399	198	16	human_non_tata	human_non_tata	NUM
bracis-28399	198	17	datasets	dataset	NOUN
bracis-28399	198	18	,	,	PUNCT
bracis-28399	198	19	our	our	PRON
bracis-28399	198	20	implementations	implementation	NOUN
bracis-28399	198	21	did	do	AUX
bracis-28399	198	22	not	not	PART
bracis-28399	198	23	yield	yield	VERB
bracis-28399	198	24	comparable	comparable	ADJ
bracis-28399	198	25	results	result	NOUN
bracis-28399	198	26	to	to	ADP
bracis-28399	198	27	the	the	DET
bracis-28399	198	28	baseline	baseline	PROPN
bracis-28399	198	29	model	model	NOUN
bracis-28399	198	30	.	.	PUNCT
bracis-28399	198	31	table	table	NOUN
bracis-28399	199	1	3	3	NUM
bracis-28399	199	2	.	.	PUNCT
bracis-28399	200	1	mean	mean	ADJ
bracis-28399	200	2	values	value	NOUN
bracis-28399	200	3	of	of	ADP
bracis-28399	200	4	mcc	mcc	NOUN
bracis-28399	200	5	metrics	metric	NOUN
bracis-28399	200	6	obtained	obtain	VERB
bracis-28399	200	7	from	from	ADP
bracis-28399	200	8	5	5	NUM
bracis-28399	200	9	-	-	ADJ
bracis-28399	200	10	fold	fold	ADJ
bracis-28399	200	11	cross	cross	NOUN
bracis-28399	200	12	-	-	NOUN
bracis-28399	200	13	validation	validation	NOUN
bracis-28399	200	14	on	on	ADP
bracis-28399	200	15	each	each	DET
bracis-28399	200	16	dataset.full	dataset.full	PROPN
bracis-28399	200	17	size	size	NOUN
bracis-28399	200	18	table	table	NOUN
bracis-28399	200	19	4	4	NUM
bracis-28399	200	20	conclusions	conclusion	NOUN
bracis-28399	200	21	this	this	DET
bracis-28399	200	22	work	work	NOUN
bracis-28399	200	23	presents	present	VERB
bracis-28399	200	24	a	a	DET
bracis-28399	200	25	study	study	NOUN
bracis-28399	200	26	of	of	ADP
bracis-28399	200	27	the	the	DET
bracis-28399	200	28	use	use	NOUN
bracis-28399	200	29	of	of	ADP
bracis-28399	200	30	the	the	DET
bracis-28399	200	31	physicochemical	physicochemical	ADJ
bracis-28399	200	32	properties	property	NOUN
bracis-28399	200	33	of	of	ADP
bracis-28399	200	34	dna	dna	PROPN
bracis-28399	200	35	as	as	ADP
bracis-28399	200	36	features	feature	NOUN
bracis-28399	200	37	in	in	ADP
bracis-28399	200	38	training	train	VERB
bracis-28399	200	39	machine	machine	NOUN
bracis-28399	200	40	-	-	PUNCT
bracis-28399	200	41	learning	learn	VERB
bracis-28399	200	42	models	model	NOUN
bracis-28399	200	43	.	.	PUNCT
bracis-28399	201	1	using	use	VERB
bracis-28399	201	2	different	different	ADJ
bracis-28399	201	3	metrics	metric	NOUN
bracis-28399	201	4	,	,	PUNCT
bracis-28399	201	5	we	we	PRON
bracis-28399	201	6	evaluated	evaluate	VERB
bracis-28399	201	7	several	several	ADJ
bracis-28399	201	8	models	model	NOUN
bracis-28399	201	9	using	use	VERB
bracis-28399	201	10	seven	seven	NUM
bracis-28399	201	11	datasets	dataset	NOUN
bracis-28399	201	12	of	of	ADP
bracis-28399	201	13	procaryotic	procaryotic	ADJ
bracis-28399	201	14	and	and	CCONJ
bracis-28399	201	15	eucaryotic	eucaryotic	ADJ
bracis-28399	201	16	organisms	organism	NOUN
bracis-28399	201	17	.	.	PUNCT
bracis-28399	202	1	our	our	PRON
bracis-28399	202	2	study	study	NOUN
bracis-28399	202	3	analyzed	analyze	VERB
bracis-28399	202	4	the	the	DET
bracis-28399	202	5	prediction	prediction	NOUN
bracis-28399	202	6	performance	performance	NOUN
bracis-28399	202	7	of	of	ADP
bracis-28399	202	8	individual	individual	ADJ
bracis-28399	202	9	properties	property	NOUN
bracis-28399	202	10	models	model	NOUN
bracis-28399	202	11	and	and	CCONJ
bracis-28399	202	12	ensemble	ensemble	ADJ
bracis-28399	202	13	models	model	NOUN
bracis-28399	202	14	using	use	VERB
bracis-28399	202	15	the	the	DET
bracis-28399	202	16	best	good	ADJ
bracis-28399	202	17	properties	property	NOUN
bracis-28399	202	18	,	,	PUNCT
bracis-28399	202	19	comparing	compare	VERB
bracis-28399	202	20	them	they	PRON
bracis-28399	202	21	with	with	ADP
bracis-28399	202	22	the	the	DET
bracis-28399	202	23	state	state	NOUN
bracis-28399	202	24	-	-	PUNCT
bracis-28399	202	25	of	of	ADP
bracis-28399	202	26	-	-	PUNCT
bracis-28399	202	27	art	art	NOUN
bracis-28399	202	28	method	method	NOUN
bracis-28399	202	29	cnnprom	cnnprom	NOUN
bracis-28399	202	30	for	for	ADP
bracis-28399	202	31	the	the	DET
bracis-28399	202	32	evaluated	evaluated	ADJ
bracis-28399	202	33	datasets	dataset	NOUN
bracis-28399	202	34	.	.	PUNCT
bracis-28399	203	1	we	we	PRON
bracis-28399	203	2	concluded	conclude	VERB
bracis-28399	203	3	that	that	SCONJ
bracis-28399	203	4	even	even	ADV
bracis-28399	203	5	though	though	SCONJ
bracis-28399	203	6	the	the	DET
bracis-28399	203	7	models	model	NOUN
bracis-28399	203	8	trained	train	VERB
bracis-28399	203	9	with	with	ADP
bracis-28399	203	10	the	the	DET
bracis-28399	203	11	properties	property	NOUN
bracis-28399	203	12	achieved	achieve	VERB
bracis-28399	203	13	competitive	competitive	ADJ
bracis-28399	203	14	prediction	prediction	NOUN
bracis-28399	203	15	results	result	NOUN
bracis-28399	203	16	,	,	PUNCT
bracis-28399	203	17	they	they	PRON
bracis-28399	203	18	were	be	AUX
bracis-28399	203	19	unable	unable	ADJ
bracis-28399	203	20	to	to	PART
bracis-28399	203	21	surpass	surpass	VERB
bracis-28399	203	22	the	the	DET
bracis-28399	203	23	established	establish	VERB
bracis-28399	203	24	baseline	baseline	NOUN
bracis-28399	203	25	.	.	PUNCT
bracis-28399	204	1	so	so	ADV
bracis-28399	204	2	,	,	PUNCT
bracis-28399	204	3	it	it	PRON
bracis-28399	204	4	is	be	AUX
bracis-28399	204	5	necessary	necessary	ADJ
bracis-28399	204	6	to	to	PART
bracis-28399	204	7	evaluate	evaluate	VERB
bracis-28399	204	8	new	new	ADJ
bracis-28399	204	9	strategies	strategy	NOUN
bracis-28399	204	10	to	to	PART
bracis-28399	204	11	use	use	VERB
bracis-28399	204	12	these	these	DET
bracis-28399	204	13	physicochemical	physicochemical	ADJ
bracis-28399	204	14	properties	property	NOUN
bracis-28399	204	15	values	value	NOUN
bracis-28399	204	16	,	,	PUNCT
bracis-28399	204	17	like	like	ADP
bracis-28399	204	18	deriving	derive	VERB
bracis-28399	204	19	other	other	ADJ
bracis-28399	204	20	features	feature	NOUN
bracis-28399	204	21	through	through	ADP
bracis-28399	204	22	feature	feature	NOUN
bracis-28399	204	23	engineering	engineering	NOUN
bracis-28399	204	24	or	or	CCONJ
bracis-28399	204	25	using	use	VERB
bracis-28399	204	26	deep	deep	ADJ
bracis-28399	204	27	learning	learning	NOUN
bracis-28399	204	28	models	model	NOUN
bracis-28399	204	29	to	to	PART
bracis-28399	204	30	automatically	automatically	ADV
bracis-28399	204	31	derive	derive	VERB
bracis-28399	204	32	better	well	ADJ
bracis-28399	204	33	features	feature	NOUN
bracis-28399	204	34	from	from	ADP
bracis-28399	204	35	them	they	PRON
bracis-28399	204	36	.	.	PUNCT
bracis-28399	205	1	notes	note	VERB
bracis-28399	205	2	1.https://github.com/solovictor/cnnpromoterdata	1.https://github.com/solovictor/cnnpromoterdata	NUM
bracis-28399	205	3	.	.	PUNCT
bracis-28399	206	1	2.official	2.official	NUM
bracis-28399	206	2	page	page	NOUN
bracis-28399	206	3	:	:	PUNCT
bracis-28399	206	4	https://pycaret.gitbook.io/.	https://pycaret.gitbook.io/.	PROPN
bracis-28399	206	5	references	reference	NOUN
bracis-28399	206	6	arslan	arslan	PROPN
bracis-28399	206	7	,	,	PUNCT
bracis-28399	206	8	h.	h.	PROPN
bracis-28399	206	9	:	:	PUNCT
bracis-28399	206	10	a	a	DET
bracis-28399	206	11	new	new	ADJ
bracis-28399	206	12	promoter	promoter	NOUN
bracis-28399	206	13	prediction	prediction	NOUN
bracis-28399	206	14	method	method	NOUN
bracis-28399	206	15	using	use	VERB
bracis-28399	206	16	support	support	NOUN
bracis-28399	206	17	vector	vector	NOUN
bracis-28399	206	18	machines	machine	NOUN
bracis-28399	206	19	.	.	PUNCT
bracis-28399	207	1	in	in	ADP
bracis-28399	207	2	:	:	PUNCT
bracis-28399	207	3	2019	2019	NUM
bracis-28399	207	4	27th	27th	ADJ
bracis-28399	207	5	signal	signal	NOUN
bracis-28399	207	6	processing	processing	NOUN
bracis-28399	207	7	and	and	CCONJ
bracis-28399	207	8	communications	communication	NOUN
bracis-28399	207	9	applications	application	NOUN
bracis-28399	207	10	conference	conference	NOUN
bracis-28399	207	11	(	(	PUNCT
bracis-28399	207	12	siu	siu	NOUN
bracis-28399	207	13	)	)	PUNCT
bracis-28399	207	14	,	,	PUNCT
bracis-28399	207	15	pp	pp	PROPN
bracis-28399	207	16	.	.	PUNCT
bracis-28399	208	1	1–4	1–4	PROPN
bracis-28399	208	2	.	.	PUNCT
bracis-28399	208	3	ieee	ieee	PROPN
bracis-28399	208	4	(	(	PUNCT
bracis-28399	208	5	2019	2019	NUM
bracis-28399	208	6	)	)	PUNCT
bracis-28399	208	7	google	google	PROPN
bracis-28399	208	8	scholar	scholar	NOUN
bracis-28399	208	9	  	  	SPACE
bracis-28399	208	10	bergstra	bergstra	PROPN
bracis-28399	208	11	,	,	PUNCT
bracis-28399	208	12	j.	j.	PROPN
bracis-28399	208	13	,	,	PUNCT
bracis-28399	208	14	bardenet	bardenet	PROPN
bracis-28399	208	15	,	,	PUNCT
bracis-28399	208	16	r.	r.	PROPN
bracis-28399	208	17	,	,	PUNCT
bracis-28399	208	18	bengio	bengio	PROPN
bracis-28399	208	19	,	,	PUNCT
bracis-28399	208	20	y.	y.	PROPN
bracis-28399	208	21	,	,	PUNCT
bracis-28399	208	22	kégl	kégl	PROPN
bracis-28399	208	23	,	,	PUNCT
bracis-28399	208	24	b.	b.	PROPN
bracis-28399	208	25	:	:	PUNCT
bracis-28399	208	26	algorithms	algorithm	NOUN
bracis-28399	208	27	for	for	ADP
bracis-28399	208	28	hyper	hyper	ADJ
bracis-28399	208	29	-	-	ADJ
bracis-28399	208	30	parameter	parameter	ADJ
bracis-28399	208	31	optimization	optimization	NOUN
bracis-28399	208	32	.	.	PUNCT
bracis-28399	209	1	in	in	ADP
bracis-28399	209	2	:	:	PUNCT
bracis-28399	209	3	advances	advance	NOUN
bracis-28399	209	4	in	in	ADP
bracis-28399	209	5	neural	neural	ADJ
bracis-28399	209	6	information	information	NOUN
bracis-28399	209	7	processing	processing	NOUN
bracis-28399	209	8	systems	system	NOUN
bracis-28399	209	9	,	,	PUNCT
bracis-28399	209	10	vol	vol	NOUN
bracis-28399	209	11	.	.	PROPN
bracis-28399	209	12	24	24	NUM
bracis-28399	209	13	(	(	PUNCT
bracis-28399	209	14	2011	2011	NUM
bracis-28399	209	15	)	)	PUNCT
bracis-28399	209	16	google	google	PROPN
bracis-28399	209	17	scholar	scholar	NOUN
bracis-28399	209	18	  	  	SPACE
bracis-28399	209	19	bhandari	bhandari	NOUN
bracis-28399	209	20	,	,	PUNCT
bracis-28399	209	21	n.	n.	NOUN
bracis-28399	209	22	,	,	PUNCT
bracis-28399	209	23	khare	khare	PROPN
bracis-28399	209	24	,	,	PUNCT
bracis-28399	209	25	s.	s.	PROPN
bracis-28399	209	26	,	,	PUNCT
bracis-28399	209	27	walambe	walambe	PROPN
bracis-28399	209	28	,	,	PUNCT
bracis-28399	209	29	r.	r.	PROPN
bracis-28399	209	30	,	,	PUNCT
bracis-28399	209	31	kotecha	kotecha	PROPN
bracis-28399	209	32	,	,	PUNCT
bracis-28399	209	33	k.	k.	PROPN
bracis-28399	209	34	:	:	PUNCT
bracis-28399	209	35	comparison	comparison	NOUN
bracis-28399	209	36	of	of	ADP
bracis-28399	209	37	machine	machine	NOUN
bracis-28399	209	38	learning	learning	NOUN
bracis-28399	209	39	and	and	CCONJ
bracis-28399	209	40	deep	deep	ADJ
bracis-28399	209	41	learning	learning	NOUN
bracis-28399	209	42	techniques	technique	NOUN
bracis-28399	209	43	in	in	ADP
bracis-28399	209	44	promoter	promoter	NOUN
bracis-28399	209	45	prediction	prediction	NOUN
bracis-28399	209	46	across	across	ADP
bracis-28399	209	47	diverse	diverse	ADJ
bracis-28399	209	48	species	specie	NOUN
bracis-28399	209	49	.	.	PUNCT
bracis-28399	210	1	peerj	peerj	PROPN
bracis-28399	210	2	comput	comput	NOUN
bracis-28399	210	3	.	.	PUNCT
bracis-28399	211	1	sci	sci	PROPN
bracis-28399	211	2	.	.	PROPN
bracis-28399	212	1	7	7	NUM
bracis-28399	212	2	,	,	PUNCT
bracis-28399	212	3	e365	e365	PROPN
bracis-28399	212	4	(	(	PUNCT
bracis-28399	212	5	2021	2021	NUM
bracis-28399	212	6	)	)	PUNCT
bracis-28399	212	7	article	article	NOUN
bracis-28399	212	8	  	  	SPACE
bracis-28399	212	9	google	google	PROPN
bracis-28399	212	10	scholar	scholar	NOUN
bracis-28399	212	11	  	  	SPACE
bracis-28399	212	12	breiman	breiman	NOUN
bracis-28399	212	13	,	,	PUNCT
bracis-28399	212	14	l.	l.	PROPN
bracis-28399	212	15	:	:	PUNCT
bracis-28399	212	16	random	random	ADJ
bracis-28399	212	17	forests	forest	NOUN
bracis-28399	212	18	.	.	PUNCT
bracis-28399	213	1	mach	mach	NOUN
bracis-28399	213	2	.	.	PUNCT
bracis-28399	214	1	learn	learn	VERB
bracis-28399	214	2	.	.	PUNCT
bracis-28399	215	1	45	45	NUM
bracis-28399	215	2	,	,	PUNCT
bracis-28399	215	3	5–32	5–32	NUM
bracis-28399	215	4	(	(	PUNCT
bracis-28399	215	5	2001	2001	NUM
bracis-28399	215	6	)	)	PUNCT
bracis-28399	215	7	article	article	NOUN
bracis-28399	215	8	  	  	SPACE
bracis-28399	215	9	math	math	NOUN
bracis-28399	215	10	  	  	SPACE
bracis-28399	215	11	google	google	PROPN
bracis-28399	215	12	scholar	scholar	NOUN
bracis-28399	215	13	  	  	SPACE
bracis-28399	215	14	cartharius	cartharius	NOUN
bracis-28399	215	15	,	,	PUNCT
bracis-28399	215	16	k.	k.	PROPN
bracis-28399	215	17	,	,	PUNCT
bracis-28399	215	18	et	et	PROPN
bracis-28399	215	19	al	al	PROPN
bracis-28399	215	20	.	.	PUNCT
bracis-28399	215	21	:	:	PUNCT
bracis-28399	215	22	matinspector	matinspector	NOUN
bracis-28399	215	23	and	and	CCONJ
bracis-28399	215	24	beyond	beyond	ADP
bracis-28399	215	25	:	:	PUNCT
bracis-28399	215	26	promoter	promoter	NOUN
bracis-28399	215	27	analysis	analysis	NOUN
bracis-28399	215	28	based	base	VERB
bracis-28399	215	29	on	on	ADP
bracis-28399	215	30	transcription	transcription	NOUN
bracis-28399	215	31	factor	factor	NOUN
bracis-28399	215	32	binding	bind	VERB
bracis-28399	215	33	sites	site	NOUN
bracis-28399	215	34	.	.	PUNCT
bracis-28399	216	1	bioinformatics	bioinformatic	NOUN
bracis-28399	216	2	21(13	21(13	NUM
bracis-28399	216	3	)	)	PUNCT
bracis-28399	216	4	,	,	PUNCT
bracis-28399	216	5	2933–2942	2933–2942	NUM
bracis-28399	216	6	(	(	PUNCT
bracis-28399	216	7	2005	2005	NUM
bracis-28399	216	8	)	)	PUNCT
bracis-28399	216	9	article	article	NOUN
bracis-28399	216	10	  	  	SPACE
bracis-28399	216	11	google	google	PROPN
bracis-28399	216	12	scholar	scholar	NOUN
bracis-28399	216	13	  	  	SPACE
bracis-28399	216	14	chen	chen	PROPN
bracis-28399	216	15	,	,	PUNCT
bracis-28399	216	16	t.	t.	PROPN
bracis-28399	216	17	,	,	PUNCT
bracis-28399	216	18	guestrin	guestrin	NOUN
bracis-28399	216	19	,	,	PUNCT
bracis-28399	216	20	c.	c.	PROPN
bracis-28399	216	21	:	:	PUNCT
bracis-28399	217	1	xgboost	xgboost	ADV
bracis-28399	217	2	:	:	PUNCT
bracis-28399	217	3	a	a	DET
bracis-28399	217	4	scalable	scalable	ADJ
bracis-28399	217	5	tree	tree	NOUN
bracis-28399	217	6	boosting	boost	VERB
bracis-28399	217	7	system	system	NOUN
bracis-28399	217	8	.	.	PUNCT
bracis-28399	218	1	in	in	ADP
bracis-28399	218	2	:	:	PUNCT
bracis-28399	218	3	proceedings	proceeding	NOUN
bracis-28399	218	4	of	of	ADP
bracis-28399	218	5	the	the	DET
bracis-28399	218	6	22nd	22nd	PROPN
bracis-28399	218	7	acm	acm	PROPN
bracis-28399	218	8	sigkdd	sigkdd	PROPN
bracis-28399	218	9	international	international	ADJ
bracis-28399	218	10	conference	conference	NOUN
bracis-28399	218	11	on	on	ADP
bracis-28399	218	12	knowledge	knowledge	NOUN
bracis-28399	218	13	discovery	discovery	PROPN
bracis-28399	218	14	and	and	CCONJ
bracis-28399	218	15	data	datum	NOUN
bracis-28399	218	16	mining	mining	NOUN
bracis-28399	218	17	,	,	PUNCT
bracis-28399	218	18	pp	pp	ADP
bracis-28399	218	19	.	.	PUNCT
bracis-28399	219	1	785–794	785–794	NUM
bracis-28399	219	2	(	(	PUNCT
bracis-28399	219	3	2016	2016	NUM
bracis-28399	219	4	)	)	PUNCT
bracis-28399	219	5	google	google	PROPN
bracis-28399	219	6	scholar	scholar	NOUN
bracis-28399	219	7	  	  	SPACE
bracis-28399	219	8	chen	chen	PROPN
bracis-28399	219	9	,	,	PUNCT
bracis-28399	219	10	w.	w.	PROPN
bracis-28399	219	11	,	,	PUNCT
bracis-28399	219	12	lei	lei	PROPN
bracis-28399	219	13	,	,	PUNCT
bracis-28399	219	14	t.y	t.y	PROPN
bracis-28399	219	15	.	.	PROPN
bracis-28399	219	16	,	,	PUNCT
bracis-28399	219	17	jin	jin	PROPN
bracis-28399	219	18	,	,	PUNCT
bracis-28399	219	19	d.c	d.c	PROPN
bracis-28399	219	20	.	.	PROPN
bracis-28399	219	21	,	,	PUNCT
bracis-28399	219	22	lin	lin	PROPN
bracis-28399	219	23	,	,	PUNCT
bracis-28399	219	24	h.	h.	PROPN
bracis-28399	219	25	,	,	PUNCT
bracis-28399	219	26	chou	chou	PROPN
bracis-28399	219	27	,	,	PUNCT
bracis-28399	219	28	k.c	k.c	PROPN
bracis-28399	219	29	.	.	PUNCT
bracis-28399	219	30	:	:	PUNCT
bracis-28399	220	1	pseknc	pseknc	NOUN
bracis-28399	220	2	:	:	PUNCT
bracis-28399	220	3	a	a	DET
bracis-28399	220	4	flexible	flexible	ADJ
bracis-28399	220	5	web	web	NOUN
bracis-28399	220	6	server	server	NOUN
bracis-28399	220	7	for	for	ADP
bracis-28399	220	8	generating	generate	VERB
bracis-28399	220	9	pseudo	pseudo	NOUN
bracis-28399	220	10	k	k	NOUN
bracis-28399	220	11	-	-	ADJ
bracis-28399	220	12	tuple	tuple	ADJ
bracis-28399	220	13	nucleotide	nucleotide	ADJ
bracis-28399	220	14	composition	composition	NOUN
bracis-28399	220	15	.	.	PUNCT
bracis-28399	221	1	anal	anal	PROPN
bracis-28399	221	2	.	.	PUNCT
bracis-28399	221	3	biochem	biochem	PROPN
bracis-28399	221	4	.	.	PUNCT
bracis-28399	222	1	456	456	NUM
bracis-28399	222	2	,	,	PUNCT
bracis-28399	222	3	53–60	53–60	NUM
bracis-28399	222	4	(	(	PUNCT
bracis-28399	222	5	2014	2014	NUM
bracis-28399	222	6	)	)	PUNCT
bracis-28399	222	7	article	article	NOUN
bracis-28399	222	8	  	  	SPACE
bracis-28399	222	9	google	google	PROPN
bracis-28399	222	10	scholar	scholar	NOUN
bracis-28399	222	11	  	  	SPACE
bracis-28399	222	12	chevez	chevez	NOUN
bracis-28399	222	13	-	-	PUNCT
bracis-28399	222	14	guardado	guardado	NOUN
bracis-28399	222	15	,	,	PUNCT
bracis-28399	222	16	r.	r.	PROPN
bracis-28399	222	17	,	,	PUNCT
bracis-28399	222	18	peña	peña	PROPN
bracis-28399	222	19	-	-	PUNCT
bracis-28399	222	20	castillo	castillo	PROPN
bracis-28399	222	21	,	,	PUNCT
bracis-28399	222	22	l.	l.	PROPN
bracis-28399	222	23	:	:	PUNCT
bracis-28399	222	24	promotech	promotech	PROPN
bracis-28399	222	25	:	:	PUNCT
bracis-28399	222	26	a	a	DET
bracis-28399	222	27	general	general	ADJ
bracis-28399	222	28	tool	tool	NOUN
bracis-28399	222	29	for	for	ADP
bracis-28399	222	30	bacterial	bacterial	ADJ
bracis-28399	222	31	promoter	promoter	NOUN
bracis-28399	222	32	recognition	recognition	NOUN
bracis-28399	222	33	.	.	PUNCT
bracis-28399	223	1	genome	genome	NOUN
bracis-28399	223	2	biol	biol	NOUN
bracis-28399	223	3	.	.	PUNCT
bracis-28399	224	1	22	22	NUM
bracis-28399	224	2	,	,	PUNCT
bracis-28399	224	3	1–16	1–16	NOUN
bracis-28399	224	4	(	(	PUNCT
bracis-28399	224	5	2021	2021	NUM
bracis-28399	224	6	)	)	PUNCT
bracis-28399	224	7	article	article	NOUN
bracis-28399	224	8	  	  	SPACE
bracis-28399	224	9	google	google	PROPN
bracis-28399	224	10	scholar	scholar	NOUN
bracis-28399	224	11	  	  	SPACE
bracis-28399	224	12	cortes	corte	NOUN
bracis-28399	224	13	,	,	PUNCT
bracis-28399	224	14	c.	c.	NOUN
bracis-28399	224	15	,	,	PUNCT
bracis-28399	224	16	vapnik	vapnik	X
bracis-28399	224	17	,	,	PUNCT
bracis-28399	224	18	v.	v.	ADJ
bracis-28399	224	19	:	:	PUNCT
bracis-28399	224	20	support	support	NOUN
bracis-28399	224	21	-	-	PUNCT
bracis-28399	224	22	vector	vector	NOUN
bracis-28399	224	23	networks	network	NOUN
bracis-28399	224	24	.	.	PUNCT
bracis-28399	225	1	mach	mach	NOUN
bracis-28399	225	2	.	.	PUNCT
bracis-28399	226	1	learn	learn	VERB
bracis-28399	226	2	.	.	PROPN
bracis-28399	227	1	20	20	NUM
bracis-28399	227	2	,	,	PUNCT
bracis-28399	227	3	273–297	273–297	NUM
bracis-28399	227	4	(	(	PUNCT
bracis-28399	227	5	1995	1995	NUM
bracis-28399	227	6	)	)	PUNCT
bracis-28399	227	7	article	article	NOUN
bracis-28399	227	8	  	  	SPACE
bracis-28399	227	9	math	math	NOUN
bracis-28399	227	10	  	  	SPACE
bracis-28399	227	11	google	google	PROPN
bracis-28399	227	12	scholar	scholar	NOUN
bracis-28399	227	13	  	  	SPACE
bracis-28399	227	14	deaton	deaton	PROPN
bracis-28399	227	15	,	,	PUNCT
bracis-28399	227	16	a.m.	a.m.	ADV
bracis-28399	227	17	,	,	PUNCT
bracis-28399	227	18	bird	bird	NOUN
bracis-28399	227	19	,	,	PUNCT
bracis-28399	227	20	a.	a.	NOUN
bracis-28399	227	21	:	:	PUNCT
bracis-28399	227	22	cpg	cpg	NOUN
bracis-28399	227	23	islands	island	NOUN
bracis-28399	227	24	and	and	CCONJ
bracis-28399	227	25	the	the	DET
bracis-28399	227	26	regulation	regulation	NOUN
bracis-28399	227	27	of	of	ADP
bracis-28399	227	28	transcription	transcription	NOUN
bracis-28399	227	29	.	.	PUNCT
bracis-28399	228	1	genes	gene	NOUN
bracis-28399	228	2	dev	dev	PROPN
bracis-28399	228	3	.	.	PUNCT
bracis-28399	229	1	25(10	25(10	NUM
bracis-28399	229	2	)	)	PUNCT
bracis-28399	229	3	,	,	PUNCT
bracis-28399	229	4	1010–1022	1010–1022	NUM
bracis-28399	229	5	(	(	PUNCT
bracis-28399	229	6	2011	2011	NUM
bracis-28399	229	7	)	)	PUNCT
bracis-28399	229	8	article	article	NOUN
bracis-28399	229	9	  	  	SPACE
bracis-28399	229	10	google	google	PROPN
bracis-28399	229	11	scholar	scholar	NOUN
bracis-28399	229	12	  	  	SPACE
bracis-28399	229	13	dietterich	dietterich	PROPN
bracis-28399	229	14	,	,	PUNCT
bracis-28399	229	15	t.g	t.g	PROPN
bracis-28399	229	16	.	.	PROPN
bracis-28399	229	17	:	:	PUNCT
bracis-28399	229	18	approximate	approximate	ADJ
bracis-28399	229	19	statistical	statistical	ADJ
bracis-28399	229	20	tests	test	NOUN
bracis-28399	229	21	for	for	ADP
bracis-28399	229	22	comparing	compare	VERB
bracis-28399	229	23	supervised	supervised	ADJ
bracis-28399	229	24	classification	classification	NOUN
bracis-28399	229	25	learning	learning	NOUN
bracis-28399	229	26	algorithms	algorithm	NOUN
bracis-28399	229	27	.	.	PUNCT
bracis-28399	230	1	neural	neural	ADJ
bracis-28399	230	2	comput	comput	NOUN
bracis-28399	230	3	.	.	PUNCT
bracis-28399	231	1	10(7	10(7	NUM
bracis-28399	231	2	)	)	PUNCT
bracis-28399	231	3	,	,	PUNCT
bracis-28399	231	4	1895–1923	1895–1923	NUM
bracis-28399	231	5	(	(	PUNCT
bracis-28399	231	6	1998	1998	NUM
bracis-28399	231	7	)	)	PUNCT
bracis-28399	231	8	article	article	NOUN
bracis-28399	231	9	  	  	SPACE
bracis-28399	231	10	google	google	PROPN
bracis-28399	231	11	scholar	scholar	NOUN
bracis-28399	231	12	  	  	SPACE
bracis-28399	231	13	dreos	dreo	NOUN
bracis-28399	231	14	,	,	PUNCT
bracis-28399	231	15	r.	r.	PROPN
bracis-28399	231	16	,	,	PUNCT
bracis-28399	231	17	ambrosini	ambrosini	PROPN
bracis-28399	231	18	,	,	PUNCT
bracis-28399	231	19	g.	g.	PROPN
bracis-28399	231	20	,	,	PUNCT
bracis-28399	231	21	cavin	cavin	PROPN
bracis-28399	231	22	périer	périer	NOUN
bracis-28399	231	23	,	,	PUNCT
bracis-28399	231	24	r.	r.	PROPN
bracis-28399	231	25	,	,	PUNCT
bracis-28399	231	26	bucher	bucher	NOUN
bracis-28399	231	27	,	,	PUNCT
bracis-28399	231	28	p.	p.	NOUN
bracis-28399	231	29	:	:	PUNCT
bracis-28399	232	1	epd	epd	PROPN
bracis-28399	232	2	and	and	CCONJ
bracis-28399	232	3	epdnew	epdnew	ADJ
bracis-28399	232	4	,	,	PUNCT
bracis-28399	232	5	high	high	ADJ
bracis-28399	232	6	-	-	PUNCT
bracis-28399	232	7	quality	quality	NOUN
bracis-28399	232	8	promoter	promoter	NOUN
bracis-28399	232	9	resources	resource	NOUN
bracis-28399	232	10	in	in	ADP
bracis-28399	232	11	the	the	DET
bracis-28399	232	12	next	next	ADJ
bracis-28399	232	13	-	-	PUNCT
bracis-28399	232	14	generation	generation	NOUN
bracis-28399	232	15	sequencing	sequence	VERB
bracis-28399	232	16	era	era	NOUN
bracis-28399	232	17	.	.	PUNCT
bracis-28399	233	1	nucleic	nucleic	ADJ
bracis-28399	233	2	acids	acid	NOUN
bracis-28399	233	3	res	re	NOUN
bracis-28399	233	4	.	.	PUNCT
bracis-28399	234	1	41(d1	41(d1	NUM
bracis-28399	234	2	)	)	PUNCT
bracis-28399	234	3	,	,	PUNCT
bracis-28399	234	4	d157	d157	PROPN
bracis-28399	234	5	–	–	PUNCT
bracis-28399	234	6	d164	d164	PROPN
bracis-28399	234	7	(	(	PUNCT
bracis-28399	234	8	2013	2013	NUM
bracis-28399	234	9	)	)	PUNCT
bracis-28399	234	10	article	article	NOUN
bracis-28399	234	11	  	  	SPACE
bracis-28399	234	12	google	google	PROPN
bracis-28399	234	13	scholar	scholar	NOUN
bracis-28399	234	14	  	  	SPACE
bracis-28399	234	15	efron	efron	PROPN
bracis-28399	234	16	,	,	PUNCT
bracis-28399	234	17	b.	b.	PROPN
bracis-28399	234	18	:	:	PUNCT
bracis-28399	234	19	estimating	estimate	VERB
bracis-28399	234	20	the	the	DET
bracis-28399	234	21	error	error	NOUN
bracis-28399	234	22	rate	rate	NOUN
bracis-28399	234	23	of	of	ADP
bracis-28399	234	24	a	a	DET
bracis-28399	234	25	prediction	prediction	NOUN
bracis-28399	234	26	rule	rule	NOUN
bracis-28399	234	27	:	:	PUNCT
bracis-28399	234	28	improvement	improvement	NOUN
bracis-28399	234	29	on	on	ADP
bracis-28399	234	30	cross	cross	NOUN
bracis-28399	234	31	-	-	NOUN
bracis-28399	234	32	validation	validation	NOUN
bracis-28399	234	33	.	.	PUNCT
bracis-28399	235	1	j.	j.	PROPN
bracis-28399	235	2	am	am	PROPN
bracis-28399	235	3	.	.	PUNCT
bracis-28399	236	1	stat	stat	PROPN
bracis-28399	236	2	.	.	PUNCT
bracis-28399	237	1	assoc	assoc	PROPN
bracis-28399	237	2	.	.	PUNCT
bracis-28399	237	3	78(382	78(382	PROPN
bracis-28399	237	4	)	)	PUNCT
bracis-28399	237	5	,	,	PUNCT
bracis-28399	237	6	316–331	316–331	NUM
bracis-28399	237	7	(	(	PUNCT
bracis-28399	237	8	1983	1983	NUM
bracis-28399	237	9	)	)	PUNCT
bracis-28399	237	10	article	article	NOUN
bracis-28399	237	11	  	  	SPACE
bracis-28399	237	12	mathscinet	mathscinet	NOUN
bracis-28399	237	13	  	  	SPACE
bracis-28399	237	14	math	math	NOUN
bracis-28399	237	15	  	  	SPACE
bracis-28399	237	16	google	google	PROPN
bracis-28399	237	17	scholar	scholar	NOUN
bracis-28399	237	18	  	  	SPACE
bracis-28399	237	19	freund	freund	NOUN
bracis-28399	237	20	,	,	PUNCT
bracis-28399	237	21	y.	y.	NOUN
bracis-28399	237	22	,	,	PUNCT
bracis-28399	237	23	schapire	schapire	NOUN
bracis-28399	237	24	,	,	PUNCT
bracis-28399	237	25	r.e	r.e	PROPN
bracis-28399	237	26	.	.	PROPN
bracis-28399	237	27	:	:	PUNCT
bracis-28399	238	1	a	a	DET
bracis-28399	238	2	decision	decision	NOUN
bracis-28399	238	3	-	-	PUNCT
bracis-28399	238	4	theoretic	theoretic	NOUN
bracis-28399	238	5	generalization	generalization	NOUN
bracis-28399	238	6	of	of	ADP
bracis-28399	238	7	on	on	ADP
bracis-28399	238	8	-	-	PUNCT
bracis-28399	238	9	line	line	NOUN
bracis-28399	238	10	learning	learning	NOUN
bracis-28399	238	11	and	and	CCONJ
bracis-28399	238	12	an	an	DET
bracis-28399	238	13	application	application	NOUN
bracis-28399	238	14	to	to	ADP
bracis-28399	238	15	boosting	boost	VERB
bracis-28399	238	16	.	.	PUNCT
bracis-28399	239	1	j.	j.	PROPN
bracis-28399	239	2	comput	comput	PROPN
bracis-28399	239	3	.	.	PUNCT
bracis-28399	240	1	syst	syst	PROPN
bracis-28399	240	2	.	.	PUNCT
bracis-28399	241	1	sci	sci	PROPN
bracis-28399	241	2	.	.	PUNCT
bracis-28399	241	3	55(1	55(1	NUM
bracis-28399	241	4	)	)	PUNCT
bracis-28399	241	5	,	,	PUNCT
bracis-28399	241	6	119–139	119–139	NUM
bracis-28399	241	7	(	(	PUNCT
bracis-28399	241	8	1997	1997	NUM
bracis-28399	241	9	)	)	PUNCT
bracis-28399	241	10	article	article	NOUN
bracis-28399	241	11	  	  	SPACE
bracis-28399	241	12	mathscinet	mathscinet	NOUN
bracis-28399	241	13	  	  	SPACE
bracis-28399	241	14	math	math	NOUN
bracis-28399	241	15	  	  	SPACE
bracis-28399	241	16	google	google	PROPN
bracis-28399	241	17	scholar	scholar	NOUN
bracis-28399	241	18	  	  	SPACE
bracis-28399	241	19	friedman	friedman	PROPN
bracis-28399	241	20	,	,	PUNCT
bracis-28399	241	21	j.h	j.h	PROPN
bracis-28399	241	22	.	.	PROPN
bracis-28399	241	23	:	:	PUNCT
bracis-28399	242	1	greedy	greedy	ADJ
bracis-28399	242	2	function	function	NOUN
bracis-28399	242	3	approximation	approximation	NOUN
bracis-28399	242	4	:	:	PUNCT
bracis-28399	242	5	a	a	DET
bracis-28399	242	6	gradient	gradient	ADJ
bracis-28399	242	7	boosting	boost	VERB
bracis-28399	242	8	machine	machine	NOUN
bracis-28399	242	9	.	.	PUNCT
bracis-28399	243	1	ann	ann	PROPN
bracis-28399	243	2	.	.	PUNCT
bracis-28399	243	3	stat	stat	PROPN
bracis-28399	243	4	.	.	PUNCT
bracis-28399	244	1	1189–1232	1189–1232	NUM
bracis-28399	244	2	(	(	PUNCT
bracis-28399	244	3	2001	2001	NUM
bracis-28399	244	4	)	)	PUNCT
bracis-28399	244	5	google	google	PROPN
bracis-28399	244	6	scholar	scholar	NOUN
bracis-28399	244	7	  	  	SPACE
bracis-28399	244	8	gama	gama	NOUN
bracis-28399	244	9	-	-	PUNCT
bracis-28399	244	10	castro	castro	NOUN
bracis-28399	244	11	,	,	PUNCT
bracis-28399	244	12	s.	s.	PROPN
bracis-28399	244	13	,	,	PUNCT
bracis-28399	244	14	et	et	PROPN
bracis-28399	244	15	al	al	PROPN
bracis-28399	244	16	.	.	PUNCT
bracis-28399	244	17	:	:	PUNCT
bracis-28399	245	1	regulondb	regulondb	NOUN
bracis-28399	245	2	version	version	NOUN
bracis-28399	245	3	9.0	9.0	NUM
bracis-28399	245	4	:	:	PUNCT
bracis-28399	245	5	high	high	ADJ
bracis-28399	245	6	-	-	PUNCT
bracis-28399	245	7	level	level	NOUN
bracis-28399	245	8	integration	integration	NOUN
bracis-28399	245	9	of	of	ADP
bracis-28399	245	10	gene	gene	NOUN
bracis-28399	245	11	regulation	regulation	NOUN
bracis-28399	245	12	,	,	PUNCT
bracis-28399	245	13	coexpression	coexpression	NOUN
bracis-28399	245	14	,	,	PUNCT
bracis-28399	245	15	motif	motif	NOUN
bracis-28399	245	16	clustering	clustering	NOUN
bracis-28399	245	17	and	and	CCONJ
bracis-28399	245	18	beyond	beyond	ADP
bracis-28399	245	19	.	.	PUNCT
bracis-28399	246	1	nucleic	nucleic	ADJ
bracis-28399	246	2	acids	acid	NOUN
bracis-28399	246	3	res	re	NOUN
bracis-28399	246	4	.	.	PUNCT
bracis-28399	247	1	44(d1	44(d1	X
bracis-28399	247	2	)	)	PUNCT
bracis-28399	247	3	,	,	PUNCT
bracis-28399	247	4	d133	d133	PROPN
bracis-28399	247	5	–	–	PUNCT
bracis-28399	247	6	d143	d143	PROPN
bracis-28399	247	7	(	(	PUNCT
bracis-28399	247	8	2016	2016	NUM
bracis-28399	247	9	)	)	PUNCT
bracis-28399	247	10	google	google	PROPN
bracis-28399	247	11	scholar	scholar	NOUN
bracis-28399	247	12	  	  	SPACE
bracis-28399	247	13	goñi	goñi	NOUN
bracis-28399	247	14	,	,	PUNCT
bracis-28399	247	15	j.r	j.r	PROPN
bracis-28399	247	16	.	.	PROPN
bracis-28399	247	17	,	,	PUNCT
bracis-28399	247	18	pérez	pérez	NOUN
bracis-28399	247	19	,	,	PUNCT
bracis-28399	247	20	a.	a.	NOUN
bracis-28399	247	21	,	,	PUNCT
bracis-28399	247	22	torrents	torrent	NOUN
bracis-28399	247	23	,	,	PUNCT
bracis-28399	247	24	d.	d.	PROPN
bracis-28399	247	25	,	,	PUNCT
bracis-28399	247	26	orozco	orozco	PROPN
bracis-28399	247	27	,	,	PUNCT
bracis-28399	247	28	m.	m.	NOUN
bracis-28399	247	29	:	:	PUNCT
bracis-28399	247	30	determining	determine	VERB
bracis-28399	247	31	promoter	promoter	NOUN
bracis-28399	247	32	location	location	NOUN
bracis-28399	247	33	based	base	VERB
bracis-28399	247	34	on	on	ADP
bracis-28399	247	35	dna	dna	PROPN
bracis-28399	247	36	structure	structure	NOUN
bracis-28399	247	37	first	first	ADJ
bracis-28399	247	38	-	-	PUNCT
bracis-28399	247	39	principles	principle	NOUN
bracis-28399	247	40	calculations	calculation	NOUN
bracis-28399	247	41	.	.	PUNCT
bracis-28399	248	1	genome	genome	NOUN
bracis-28399	248	2	biol	biol	NOUN
bracis-28399	248	3	.	.	PUNCT
bracis-28399	249	1	8(12	8(12	NUM
bracis-28399	249	2	)	)	PUNCT
bracis-28399	249	3	,	,	PUNCT
bracis-28399	249	4	r263	r263	PROPN
bracis-28399	249	5	(	(	PUNCT
bracis-28399	249	6	2007	2007	NUM
bracis-28399	249	7	)	)	PUNCT
bracis-28399	249	8	article	article	NOUN
bracis-28399	249	9	  	  	SPACE
bracis-28399	249	10	google	google	PROPN
bracis-28399	249	11	scholar	scholar	NOUN
bracis-28399	249	12	  	  	SPACE
bracis-28399	249	13	hochreiter	hochreiter	PROPN
bracis-28399	249	14	,	,	PUNCT
bracis-28399	249	15	s.	s.	PROPN
bracis-28399	249	16	,	,	PUNCT
bracis-28399	249	17	schmidhuber	schmidhuber	PROPN
bracis-28399	249	18	,	,	PUNCT
bracis-28399	249	19	j.	j.	PROPN
bracis-28399	249	20	:	:	PUNCT
bracis-28399	249	21	long	long	ADJ
bracis-28399	249	22	short	short	ADJ
bracis-28399	249	23	-	-	PUNCT
bracis-28399	249	24	term	term	NOUN
bracis-28399	249	25	memory	memory	NOUN
bracis-28399	249	26	.	.	PUNCT
bracis-28399	250	1	neural	neural	ADJ
bracis-28399	250	2	comput	comput	NOUN
bracis-28399	250	3	.	.	PUNCT
bracis-28399	251	1	9(8	9(8	NUM
bracis-28399	251	2	)	)	PUNCT
bracis-28399	251	3	,	,	PUNCT
bracis-28399	251	4	1735–1780	1735–1780	NUM
bracis-28399	251	5	(	(	PUNCT
bracis-28399	251	6	1997	1997	NUM
bracis-28399	251	7	)	)	PUNCT
bracis-28399	251	8	article	article	NOUN
bracis-28399	251	9	  	  	SPACE
bracis-28399	251	10	google	google	PROPN
bracis-28399	251	11	scholar	scholar	NOUN
bracis-28399	251	12	  	  	SPACE
bracis-28399	251	13	ishii	ishii	PROPN
bracis-28399	251	14	,	,	PUNCT
bracis-28399	251	15	t.	t.	PROPN
bracis-28399	251	16	,	,	PUNCT
bracis-28399	251	17	yoshida	yoshida	PROPN
bracis-28399	251	18	,	,	PUNCT
bracis-28399	251	19	k.i	k.i	PROPN
bracis-28399	251	20	.	.	PROPN
bracis-28399	251	21	,	,	PUNCT
bracis-28399	251	22	terai	terai	PROPN
bracis-28399	251	23	,	,	PUNCT
bracis-28399	251	24	g.	g.	PROPN
bracis-28399	251	25	,	,	PUNCT
bracis-28399	251	26	fujita	fujita	PROPN
bracis-28399	251	27	,	,	PUNCT
bracis-28399	251	28	y.	y.	PROPN
bracis-28399	251	29	,	,	PUNCT
bracis-28399	251	30	nakai	nakai	PROPN
bracis-28399	251	31	,	,	PUNCT
bracis-28399	251	32	k.	k.	PROPN
bracis-28399	251	33	:	:	PUNCT
bracis-28399	252	1	dbtbs	dbtbs	PROPN
bracis-28399	252	2	:	:	PUNCT
bracis-28399	252	3	a	a	DET
bracis-28399	252	4	database	database	NOUN
bracis-28399	252	5	of	of	ADP
bracis-28399	252	6	bacillus	bacillus	NOUN
bracis-28399	252	7	subtilis	subtilis	NOUN
bracis-28399	252	8	promoters	promoter	NOUN
bracis-28399	252	9	and	and	CCONJ
bracis-28399	252	10	transcription	transcription	NOUN
bracis-28399	252	11	factors	factor	NOUN
bracis-28399	252	12	.	.	PUNCT
bracis-28399	253	1	nucleic	nucleic	ADJ
bracis-28399	253	2	acids	acid	NOUN
bracis-28399	253	3	res	re	NOUN
bracis-28399	253	4	.	.	PUNCT
bracis-28399	254	1	29(1	29(1	NUM
bracis-28399	254	2	)	)	PUNCT
bracis-28399	254	3	,	,	PUNCT
bracis-28399	255	1	278–280	278–280	NUM
bracis-28399	255	2	(	(	PUNCT
bracis-28399	255	3	2001	2001	NUM
bracis-28399	255	4	)	)	PUNCT
bracis-28399	255	5	google	google	PROPN
bracis-28399	255	6	scholar	scholar	NOUN
bracis-28399	255	7	  	  	SPACE
bracis-28399	255	8	juven	juven	PROPN
bracis-28399	255	9	-	-	PUNCT
bracis-28399	255	10	gershon	gershon	PROPN
bracis-28399	255	11	,	,	PUNCT
bracis-28399	255	12	t.	t.	PROPN
bracis-28399	255	13	,	,	PUNCT
bracis-28399	255	14	kadonaga	kadonaga	PROPN
bracis-28399	255	15	,	,	PUNCT
bracis-28399	255	16	j.t	j.t	PROPN
bracis-28399	255	17	.	.	PROPN
bracis-28399	255	18	:	:	PUNCT
bracis-28399	255	19	regulation	regulation	NOUN
bracis-28399	255	20	of	of	ADP
bracis-28399	255	21	gene	gene	NOUN
bracis-28399	255	22	expression	expression	NOUN
bracis-28399	255	23	via	via	ADP
bracis-28399	255	24	the	the	DET
bracis-28399	255	25	core	core	NOUN
bracis-28399	255	26	promoter	promoter	NOUN
bracis-28399	255	27	and	and	CCONJ
bracis-28399	255	28	the	the	DET
bracis-28399	255	29	basal	basal	ADJ
bracis-28399	255	30	transcriptional	transcriptional	NOUN
bracis-28399	255	31	machinery	machinery	NOUN
bracis-28399	255	32	.	.	PUNCT
bracis-28399	256	1	dev	dev	PROPN
bracis-28399	256	2	.	.	PUNCT
bracis-28399	257	1	biol	biol	PROPN
bracis-28399	257	2	.	.	PUNCT
bracis-28399	258	1	339(2	339(2	NUM
bracis-28399	258	2	)	)	PUNCT
bracis-28399	259	1	,	,	PUNCT
bracis-28399	259	2	225–229	225–229	NUM
bracis-28399	259	3	(	(	PUNCT
bracis-28399	259	4	2010	2010	NUM
bracis-28399	259	5	)	)	PUNCT
bracis-28399	259	6	article	article	NOUN
bracis-28399	259	7	  	  	SPACE
bracis-28399	259	8	google	google	PROPN
bracis-28399	259	9	scholar	scholar	NOUN
bracis-28399	259	10	  	  	SPACE
bracis-28399	259	11	ke	ke	PROPN
bracis-28399	259	12	,	,	PUNCT
bracis-28399	259	13	g.	g.	PROPN
bracis-28399	259	14	,	,	PUNCT
bracis-28399	259	15	et	et	PROPN
bracis-28399	259	16	al	al	PROPN
bracis-28399	259	17	.	.	PROPN
bracis-28399	259	18	:	:	PUNCT
bracis-28399	259	19	lightgbm	lightgbm	VERB
bracis-28399	259	20	:	:	PUNCT
bracis-28399	259	21	a	a	DET
bracis-28399	259	22	highly	highly	ADV
bracis-28399	259	23	efficient	efficient	ADJ
bracis-28399	259	24	gradient	gradient	NOUN
bracis-28399	259	25	boosting	boost	VERB
bracis-28399	259	26	decision	decision	NOUN
bracis-28399	259	27	tree	tree	NOUN
bracis-28399	259	28	.	.	PUNCT
bracis-28399	260	1	in	in	ADP
bracis-28399	260	2	:	:	PUNCT
bracis-28399	260	3	advances	advance	NOUN
bracis-28399	260	4	in	in	ADP
bracis-28399	260	5	neural	neural	ADJ
bracis-28399	260	6	information	information	NOUN
bracis-28399	260	7	processing	processing	NOUN
bracis-28399	260	8	systems	system	NOUN
bracis-28399	260	9	,	,	PUNCT
bracis-28399	260	10	vol	vol	NOUN
bracis-28399	260	11	.	.	PROPN
bracis-28399	260	12	30	30	NUM
bracis-28399	260	13	(	(	PUNCT
bracis-28399	260	14	2017	2017	NUM
bracis-28399	260	15	)	)	PUNCT
bracis-28399	260	16	google	google	PROPN
bracis-28399	260	17	scholar	scholar	NOUN
bracis-28399	260	18	  	  	SPACE
bracis-28399	260	19	kotsiantis	kotsiantis	PROPN
bracis-28399	260	20	,	,	PUNCT
bracis-28399	260	21	s.	s.	PROPN
bracis-28399	260	22	,	,	PUNCT
bracis-28399	260	23	kanellopoulos	kanellopoulos	PROPN
bracis-28399	260	24	,	,	PUNCT
bracis-28399	260	25	d.	d.	PROPN
bracis-28399	260	26	,	,	PUNCT
bracis-28399	260	27	pintelas	pintela	NOUN
bracis-28399	260	28	,	,	PUNCT
bracis-28399	260	29	p.	p.	PROPN
bracis-28399	260	30	,	,	PUNCT
bracis-28399	260	31	et	et	PROPN
bracis-28399	260	32	al	al	PROPN
bracis-28399	260	33	.	.	PROPN
bracis-28399	260	34	:	:	PUNCT
bracis-28399	260	35	handling	handle	VERB
bracis-28399	260	36	imbalanced	imbalanced	ADJ
bracis-28399	260	37	datasets	dataset	NOUN
bracis-28399	260	38	:	:	PUNCT
bracis-28399	260	39	a	a	DET
bracis-28399	260	40	review	review	NOUN
bracis-28399	260	41	.	.	PUNCT
bracis-28399	261	1	gests	gest	NOUN
bracis-28399	261	2	int	int	NOUN
bracis-28399	261	3	.	.	PUNCT
bracis-28399	262	1	trans	trans	PROPN
bracis-28399	262	2	.	.	PUNCT
bracis-28399	263	1	comput	comput	PROPN
bracis-28399	263	2	.	.	PUNCT
bracis-28399	264	1	sci	sci	PROPN
bracis-28399	264	2	.	.	PUNCT
bracis-28399	265	1	eng	eng	PROPN
bracis-28399	265	2	.	.	PUNCT
bracis-28399	266	1	30(1	30(1	NUM
bracis-28399	266	2	)	)	PUNCT
bracis-28399	266	3	,	,	PUNCT
bracis-28399	266	4	25–36	25–36	NUM
bracis-28399	266	5	(	(	PUNCT
bracis-28399	266	6	2006	2006	NUM
bracis-28399	266	7	)	)	PUNCT
bracis-28399	266	8	google	google	PROPN
bracis-28399	266	9	scholar	scholar	NOUN
bracis-28399	266	10	  	  	SPACE
bracis-28399	266	11	kuncheva	kuncheva	PROPN
bracis-28399	266	12	,	,	PUNCT
bracis-28399	266	13	l.i	l.i	PROPN
bracis-28399	266	14	.	.	PROPN
bracis-28399	266	15	:	:	PUNCT
bracis-28399	267	1	combining	combine	VERB
bracis-28399	267	2	pattern	pattern	NOUN
bracis-28399	267	3	classifiers	classifier	NOUN
bracis-28399	267	4	:	:	PUNCT
bracis-28399	267	5	methods	method	NOUN
bracis-28399	267	6	and	and	CCONJ
bracis-28399	267	7	algorithms	algorithm	NOUN
bracis-28399	267	8	.	.	PUNCT
bracis-28399	268	1	john	john	PROPN
bracis-28399	268	2	wiley	wiley	PROPN
bracis-28399	268	3	&	&	CCONJ
bracis-28399	268	4	sons	sons	PROPN
bracis-28399	268	5	(	(	PUNCT
bracis-28399	268	6	2014	2014	NUM
bracis-28399	268	7	)	)	PUNCT
bracis-28399	268	8	google	google	PROPN
bracis-28399	268	9	scholar	scholar	NOUN
bracis-28399	268	10	  	  	SPACE
bracis-28399	268	11	lecun	lecun	ADJ
bracis-28399	268	12	,	,	PUNCT
bracis-28399	268	13	y.	y.	PROPN
bracis-28399	268	14	,	,	PUNCT
bracis-28399	268	15	bottou	bottou	PROPN
bracis-28399	268	16	,	,	PUNCT
bracis-28399	268	17	l.	l.	PROPN
bracis-28399	268	18	,	,	PUNCT
bracis-28399	268	19	bengio	bengio	PROPN
bracis-28399	268	20	,	,	PUNCT
bracis-28399	268	21	y.	y.	PROPN
bracis-28399	268	22	,	,	PUNCT
bracis-28399	268	23	haffner	haffner	NOUN
bracis-28399	268	24	,	,	PUNCT
bracis-28399	268	25	p.	p.	NOUN
bracis-28399	268	26	:	:	PUNCT
bracis-28399	268	27	gradient	gradient	NOUN
bracis-28399	268	28	-	-	PUNCT
bracis-28399	268	29	based	base	VERB
bracis-28399	268	30	learning	learning	NOUN
bracis-28399	268	31	applied	apply	VERB
bracis-28399	268	32	to	to	ADP
bracis-28399	268	33	document	document	NOUN
bracis-28399	268	34	recognition	recognition	NOUN
bracis-28399	268	35	.	.	PUNCT
bracis-28399	269	1	proc	proc	PROPN
bracis-28399	269	2	.	.	PUNCT
bracis-28399	270	1	ieee	ieee	PROPN
bracis-28399	270	2	86(11	86(11	NUM
bracis-28399	270	3	)	)	PUNCT
bracis-28399	270	4	,	,	PUNCT
bracis-28399	270	5	2278–2324	2278–2324	NUM
bracis-28399	270	6	(	(	PUNCT
bracis-28399	270	7	1998	1998	NUM
bracis-28399	270	8	)	)	PUNCT
bracis-28399	270	9	article	article	NOUN
bracis-28399	270	10	  	  	SPACE
bracis-28399	270	11	google	google	PROPN
bracis-28399	270	12	scholar	scholar	NOUN
bracis-28399	270	13	  	  	SPACE
bracis-28399	270	14	li	li	PROPN
bracis-28399	270	15	,	,	PUNCT
bracis-28399	270	16	f.	f.	PROPN
bracis-28399	270	17	,	,	PUNCT
bracis-28399	270	18	et	et	PROPN
bracis-28399	270	19	al	al	PROPN
bracis-28399	270	20	.	.	PUNCT
bracis-28399	270	21	:	:	PUNCT
bracis-28399	270	22	computational	computational	ADJ
bracis-28399	270	23	prediction	prediction	NOUN
bracis-28399	270	24	and	and	CCONJ
bracis-28399	270	25	interpretation	interpretation	NOUN
bracis-28399	270	26	of	of	ADP
bracis-28399	270	27	both	both	CCONJ
bracis-28399	270	28	general	general	ADJ
bracis-28399	270	29	and	and	CCONJ
bracis-28399	270	30	specific	specific	ADJ
bracis-28399	270	31	types	type	NOUN
bracis-28399	270	32	of	of	ADP
bracis-28399	270	33	promoters	promoter	NOUN
bracis-28399	270	34	in	in	ADP
bracis-28399	270	35	escherichia	escherichia	NOUN
bracis-28399	270	36	coli	coli	NOUN
bracis-28399	270	37	by	by	ADP
bracis-28399	270	38	exploiting	exploit	VERB
bracis-28399	270	39	a	a	DET
bracis-28399	270	40	stacked	stack	VERB
bracis-28399	270	41	ensemble	ensemble	ADJ
bracis-28399	270	42	-	-	PUNCT
bracis-28399	270	43	learning	learn	VERB
bracis-28399	270	44	framework	framework	NOUN
bracis-28399	270	45	.	.	PUNCT
bracis-28399	271	1	brief	brief	ADJ
bracis-28399	271	2	.	.	PUNCT
bracis-28399	272	1	bioinform	bioinform	NOUN
bracis-28399	272	2	.	.	PUNCT
bracis-28399	273	1	22(2	22(2	VERB
bracis-28399	273	2	)	)	PUNCT
bracis-28399	273	3	,	,	PUNCT
bracis-28399	273	4	2126–2140	2126–2140	NUM
bracis-28399	273	5	(	(	PUNCT
bracis-28399	273	6	2021	2021	NUM
bracis-28399	273	7	)	)	PUNCT
bracis-28399	273	8	article	article	NOUN
bracis-28399	273	9	  	  	SPACE
bracis-28399	273	10	mathscinet	mathscinet	NOUN
bracis-28399	273	11	  	  	SPACE
bracis-28399	273	12	google	google	PROPN
bracis-28399	273	13	scholar	scholar	NOUN
bracis-28399	273	14	  	  	SPACE
bracis-28399	273	15	meng	meng	PROPN
bracis-28399	273	16	,	,	PUNCT
bracis-28399	273	17	h.	h.	PROPN
bracis-28399	273	18	,	,	PUNCT
bracis-28399	273	19	ma	ma	PROPN
bracis-28399	273	20	,	,	PUNCT
bracis-28399	273	21	y.	y.	PROPN
bracis-28399	273	22	,	,	PUNCT
bracis-28399	273	23	mai	mai	PROPN
bracis-28399	273	24	,	,	PUNCT
bracis-28399	273	25	g.	g.	PROPN
bracis-28399	273	26	,	,	PUNCT
bracis-28399	273	27	wang	wang	PROPN
bracis-28399	273	28	,	,	PUNCT
bracis-28399	273	29	y.	y.	PROPN
bracis-28399	273	30	,	,	PUNCT
bracis-28399	273	31	liu	liu	PROPN
bracis-28399	273	32	,	,	PUNCT
bracis-28399	273	33	c.	c.	NOUN
bracis-28399	273	34	:	:	PUNCT
bracis-28399	273	35	construction	construction	NOUN
bracis-28399	273	36	of	of	ADP
bracis-28399	273	37	precise	precise	ADJ
bracis-28399	273	38	support	support	NOUN
bracis-28399	273	39	vector	vector	NOUN
bracis-28399	273	40	machine	machine	NOUN
bracis-28399	273	41	based	base	VERB
bracis-28399	273	42	models	model	NOUN
bracis-28399	273	43	for	for	ADP
bracis-28399	273	44	predicting	predict	VERB
bracis-28399	273	45	promoter	promoter	NOUN
bracis-28399	273	46	strength	strength	NOUN
bracis-28399	273	47	.	.	PUNCT
bracis-28399	274	1	quant	quant	NOUN
bracis-28399	274	2	.	.	PUNCT
bracis-28399	275	1	biol	biol	PROPN
bracis-28399	275	2	.	.	PUNCT
bracis-28399	276	1	5	5	NUM
bracis-28399	276	2	,	,	PUNCT
bracis-28399	276	3	90–98	90–98	NUM
bracis-28399	276	4	(	(	PUNCT
bracis-28399	276	5	2017	2017	NUM
bracis-28399	276	6	)	)	PUNCT
bracis-28399	276	7	article	article	NOUN
bracis-28399	276	8	  	  	SPACE
bracis-28399	276	9	google	google	PROPN
bracis-28399	276	10	scholar	scholar	NOUN
bracis-28399	276	11	  	  	SPACE
bracis-28399	276	12	moraes	moraes	PROPN
bracis-28399	276	13	,	,	PUNCT
bracis-28399	276	14	l.	l.	PROPN
bracis-28399	276	15	,	,	PUNCT
bracis-28399	276	16	silva	silva	PROPN
bracis-28399	276	17	,	,	PUNCT
bracis-28399	276	18	p.	p.	PROPN
bracis-28399	276	19	,	,	PUNCT
bracis-28399	276	20	luz	luz	PROPN
bracis-28399	276	21	,	,	PUNCT
bracis-28399	276	22	e.	e.	PROPN
bracis-28399	276	23	,	,	PUNCT
bracis-28399	276	24	moreira	moreira	PROPN
bracis-28399	276	25	,	,	PUNCT
bracis-28399	276	26	g.	g.	PROPN
bracis-28399	276	27	:	:	PUNCT
bracis-28399	276	28	capsprom	capsprom	NUM
bracis-28399	276	29	:	:	PUNCT
bracis-28399	276	30	a	a	DET
bracis-28399	276	31	capsule	capsule	NOUN
bracis-28399	276	32	network	network	NOUN
bracis-28399	276	33	for	for	ADP
bracis-28399	276	34	promoter	promoter	NOUN
bracis-28399	276	35	prediction	prediction	NOUN
bracis-28399	276	36	.	.	PUNCT
bracis-28399	277	1	comput	comput	NOUN
bracis-28399	277	2	.	.	PUNCT
bracis-28399	278	1	biol	biol	PROPN
bracis-28399	278	2	.	.	PUNCT
bracis-28399	279	1	med	med	PROPN
bracis-28399	279	2	.	.	PROPN
bracis-28399	280	1	147	147	NUM
bracis-28399	280	2	,	,	PUNCT
bracis-28399	280	3	105627	105627	NUM
bracis-28399	280	4	(	(	PUNCT
bracis-28399	280	5	2022	2022	NUM
bracis-28399	280	6	)	)	PUNCT
bracis-28399	280	7	article	article	NOUN
bracis-28399	280	8	  	  	SPACE
bracis-28399	280	9	google	google	PROPN
bracis-28399	280	10	scholar	scholar	NOUN
bracis-28399	280	11	  	  	SPACE
bracis-28399	280	12	pedersen	pedersen	NOUN
bracis-28399	280	13	,	,	PUNCT
bracis-28399	280	14	a.g	a.g	PROPN
bracis-28399	280	15	.	.	PROPN
bracis-28399	280	16	,	,	PUNCT
bracis-28399	280	17	baldi	baldi	PROPN
bracis-28399	280	18	,	,	PUNCT
bracis-28399	280	19	p.	p.	NOUN
bracis-28399	280	20	,	,	PUNCT
bracis-28399	280	21	chauvin	chauvin	PROPN
bracis-28399	280	22	,	,	PUNCT
bracis-28399	280	23	y.	y.	PROPN
bracis-28399	280	24	,	,	PUNCT
bracis-28399	280	25	brunak	brunak	NOUN
bracis-28399	280	26	,	,	PUNCT
bracis-28399	280	27	s.	s.	PROPN
bracis-28399	280	28	:	:	PUNCT
bracis-28399	280	29	the	the	DET
bracis-28399	280	30	biology	biology	NOUN
bracis-28399	280	31	of	of	ADP
bracis-28399	280	32	eukaryotic	eukaryotic	ADJ
bracis-28399	280	33	promoter	promoter	NOUN
bracis-28399	280	34	prediction	prediction	NOUN
bracis-28399	280	35	-	-	PUNCT
bracis-28399	280	36	a	a	DET
bracis-28399	280	37	review	review	NOUN
bracis-28399	280	38	.	.	PUNCT
bracis-28399	281	1	comput	comput	NOUN
bracis-28399	281	2	.	.	PUNCT
bracis-28399	282	1	chem	chem	NOUN
bracis-28399	282	2	.	.	PUNCT
bracis-28399	283	1	23(3–4	23(3–4	NUM
bracis-28399	283	2	)	)	PUNCT
bracis-28399	283	3	,	,	PUNCT
bracis-28399	283	4	191–207	191–207	NUM
bracis-28399	283	5	(	(	PUNCT
bracis-28399	283	6	1999	1999	NUM
bracis-28399	283	7	)	)	PUNCT
bracis-28399	283	8	article	article	NOUN
bracis-28399	283	9	  	  	SPACE
bracis-28399	283	10	google	google	PROPN
bracis-28399	283	11	scholar	scholar	NOUN
bracis-28399	283	12	  	  	SPACE
bracis-28399	283	13	sabour	sabour	NOUN
bracis-28399	283	14	,	,	PUNCT
bracis-28399	283	15	s.	s.	PROPN
bracis-28399	283	16	,	,	PUNCT
bracis-28399	283	17	frosst	frosst	ADJ
bracis-28399	283	18	,	,	PUNCT
bracis-28399	283	19	n.	n.	PROPN
bracis-28399	283	20	,	,	PUNCT
bracis-28399	283	21	hinton	hinton	PROPN
bracis-28399	283	22	,	,	PUNCT
bracis-28399	283	23	g.e	g.e	PROPN
bracis-28399	283	24	.	.	PUNCT
bracis-28399	283	25	:	:	PUNCT
bracis-28399	284	1	dynamic	dynamic	ADJ
bracis-28399	284	2	routing	routing	NOUN
bracis-28399	284	3	between	between	ADP
bracis-28399	284	4	capsules	capsule	NOUN
bracis-28399	284	5	.	.	PUNCT
bracis-28399	285	1	in	in	ADP
bracis-28399	285	2	:	:	PUNCT
bracis-28399	285	3	advances	advance	NOUN
bracis-28399	285	4	in	in	ADP
bracis-28399	285	5	neural	neural	ADJ
bracis-28399	285	6	information	information	NOUN
bracis-28399	285	7	processing	processing	NOUN
bracis-28399	285	8	systems	system	NOUN
bracis-28399	285	9	,	,	PUNCT
bracis-28399	285	10	vol	vol	NOUN
bracis-28399	285	11	.	.	PROPN
bracis-28399	285	12	30	30	NUM
bracis-28399	285	13	(	(	PUNCT
bracis-28399	285	14	2017	2017	NUM
bracis-28399	285	15	)	)	PUNCT
bracis-28399	285	16	google	google	NOUN
bracis-28399	285	17	scholar	scholar	NOUN
bracis-28399	285	18	  	  	SPACE
bracis-28399	285	19	umarov	umarov	ADJ
bracis-28399	285	20	,	,	PUNCT
bracis-28399	285	21	r.k	r.k	PROPN
bracis-28399	285	22	.	.	PROPN
bracis-28399	285	23	,	,	PUNCT
bracis-28399	285	24	solovyev	solovyev	PROPN
bracis-28399	285	25	,	,	PUNCT
bracis-28399	285	26	v.v	v.v	PROPN
bracis-28399	285	27	.	.	PROPN
bracis-28399	285	28	:	:	PUNCT
bracis-28399	286	1	recognition	recognition	NOUN
bracis-28399	286	2	of	of	ADP
bracis-28399	286	3	prokaryotic	prokaryotic	ADJ
bracis-28399	286	4	and	and	CCONJ
bracis-28399	286	5	eukaryotic	eukaryotic	ADJ
bracis-28399	286	6	promoters	promoter	NOUN
bracis-28399	286	7	using	use	VERB
bracis-28399	286	8	convolutional	convolutional	ADJ
bracis-28399	286	9	deep	deep	ADJ
bracis-28399	286	10	learning	learn	VERB
bracis-28399	286	11	neural	neural	ADJ
bracis-28399	286	12	networks	network	NOUN
bracis-28399	286	13	.	.	PUNCT
bracis-28399	287	1	plos	plos	PROPN
bracis-28399	287	2	one	one	NUM
bracis-28399	287	3	12(2	12(2	NUM
bracis-28399	287	4	)	)	PUNCT
bracis-28399	287	5	,	,	PUNCT
bracis-28399	287	6	e0171410	e0171410	PROPN
bracis-28399	287	7	(	(	PUNCT
bracis-28399	287	8	2017	2017	NUM
bracis-28399	287	9	)	)	PUNCT
bracis-28399	287	10	article	article	NOUN
bracis-28399	287	11	  	  	SPACE
bracis-28399	287	12	google	google	PROPN
bracis-28399	287	13	scholar	scholar	NOUN
bracis-28399	287	14	  	  	SPACE
bracis-28399	287	15	wasserman	wasserman	PROPN
bracis-28399	287	16	,	,	PUNCT
bracis-28399	287	17	w.w	w.w	PROPN
bracis-28399	287	18	.	.	PROPN
bracis-28399	287	19	,	,	PUNCT
bracis-28399	287	20	sandelin	sandelin	PROPN
bracis-28399	287	21	,	,	PUNCT
bracis-28399	287	22	a.	a.	NOUN
bracis-28399	287	23	:	:	PUNCT
bracis-28399	287	24	applied	apply	VERB
bracis-28399	287	25	bioinformatics	bioinformatics	NOUN
bracis-28399	287	26	for	for	ADP
bracis-28399	287	27	the	the	DET
bracis-28399	287	28	identification	identification	NOUN
bracis-28399	287	29	of	of	ADP
bracis-28399	287	30	regulatory	regulatory	ADJ
bracis-28399	287	31	elements	element	NOUN
bracis-28399	287	32	.	.	PUNCT
bracis-28399	288	1	nat	nat	PROPN
bracis-28399	288	2	.	.	PUNCT
bracis-28399	289	1	rev	rev	PROPN
bracis-28399	289	2	.	.	PROPN
bracis-28399	289	3	genet	genet	PROPN
bracis-28399	289	4	.	.	PUNCT
bracis-28399	290	1	5(4	5(4	X
bracis-28399	290	2	)	)	PUNCT
bracis-28399	290	3	,	,	PUNCT
bracis-28399	290	4	276–287	276–287	NUM
bracis-28399	290	5	(	(	PUNCT
bracis-28399	290	6	2004	2004	NUM
bracis-28399	290	7	)	)	PUNCT
bracis-28399	290	8	article	article	NOUN
bracis-28399	290	9	  	  	SPACE
bracis-28399	290	10	google	google	PROPN
bracis-28399	290	11	scholar	scholar	NOUN
bracis-28399	290	12	  	  	SPACE
bracis-28399	290	13	wolpert	wolpert	PROPN
bracis-28399	290	14	,	,	PUNCT
bracis-28399	290	15	d.h	d.h	PROPN
bracis-28399	290	16	.	.	PROPN
bracis-28399	290	17	:	:	PUNCT
bracis-28399	290	18	stacked	stack	VERB
bracis-28399	290	19	generalization	generalization	NOUN
bracis-28399	290	20	.	.	PUNCT
bracis-28399	291	1	neural	neural	ADJ
bracis-28399	291	2	netw	netw	NOUN
bracis-28399	291	3	.	.	PUNCT
bracis-28399	292	1	5(2	5(2	NUM
bracis-28399	292	2	)	)	PUNCT
bracis-28399	292	3	,	,	PUNCT
bracis-28399	292	4	241–259	241–259	NUM
bracis-28399	292	5	(	(	PUNCT
bracis-28399	292	6	1992	1992	NUM
bracis-28399	292	7	)	)	PUNCT
bracis-28399	292	8	article	article	NOUN
bracis-28399	292	9	  	  	SPACE
bracis-28399	292	10	google	google	PROPN
bracis-28399	292	11	scholar	scholar	NOUN
bracis-28399	292	12	  	  	SPACE
bracis-28399	292	13	zeng	zeng	PROPN
bracis-28399	292	14	,	,	PUNCT
bracis-28399	292	15	j.	j.	PROPN
bracis-28399	292	16	,	,	PUNCT
bracis-28399	292	17	zhu	zhu	PROPN
bracis-28399	292	18	,	,	PUNCT
bracis-28399	292	19	s.	s.	PROPN
bracis-28399	292	20	,	,	PUNCT
bracis-28399	292	21	yan	yan	PROPN
bracis-28399	292	22	,	,	PUNCT
bracis-28399	292	23	h.	h.	PROPN
bracis-28399	292	24	:	:	PUNCT
bracis-28399	292	25	towards	towards	ADP
bracis-28399	292	26	accurate	accurate	ADJ
bracis-28399	292	27	human	human	ADJ
bracis-28399	292	28	promoter	promoter	NOUN
bracis-28399	292	29	recognition	recognition	NOUN
bracis-28399	292	30	:	:	PUNCT
bracis-28399	292	31	a	a	DET
bracis-28399	292	32	review	review	NOUN
bracis-28399	292	33	of	of	ADP
bracis-28399	292	34	currently	currently	ADV
bracis-28399	292	35	used	use	VERB
bracis-28399	292	36	sequence	sequence	NOUN
bracis-28399	292	37	features	feature	NOUN
bracis-28399	292	38	and	and	CCONJ
bracis-28399	292	39	classification	classification	NOUN
bracis-28399	292	40	methods	method	NOUN
bracis-28399	292	41	.	.	PUNCT
bracis-28399	293	1	brief	brief	ADJ
bracis-28399	293	2	.	.	PUNCT
bracis-28399	294	1	bioinform	bioinform	NOUN
bracis-28399	294	2	.	.	PUNCT
bracis-28399	295	1	10(5	10(5	NUM
bracis-28399	295	2	)	)	PUNCT
bracis-28399	295	3	,	,	PUNCT
bracis-28399	295	4	498–508	498–508	NUM
bracis-28399	295	5	(	(	PUNCT
bracis-28399	295	6	2009	2009	NUM
bracis-28399	295	7	)	)	PUNCT
bracis-28399	295	8	article	article	NOUN
bracis-28399	295	9	  	  	SPACE
bracis-28399	295	10	google	google	PROPN
bracis-28399	295	11	scholar	scholar	PROPN
bracis-28399	295	12	  	  	SPACE
bracis-28399	295	13	zhang	zhang	PROPN
bracis-28399	295	14	,	,	PUNCT
bracis-28399	295	15	m.	m.	NOUN
bracis-28399	295	16	,	,	PUNCT
bracis-28399	295	17	et	et	PROPN
bracis-28399	295	18	al	al	PROPN
bracis-28399	295	19	.	.	PUNCT
bracis-28399	295	20	:	:	PUNCT
bracis-28399	296	1	critical	critical	ADJ
bracis-28399	296	2	assessment	assessment	NOUN
bracis-28399	296	3	of	of	ADP
bracis-28399	296	4	computational	computational	ADJ
bracis-28399	296	5	tools	tool	NOUN
bracis-28399	296	6	for	for	ADP
bracis-28399	296	7	prokaryotic	prokaryotic	ADJ
bracis-28399	296	8	and	and	CCONJ
bracis-28399	296	9	eukaryotic	eukaryotic	ADJ
bracis-28399	296	10	promoter	promoter	NOUN
bracis-28399	296	11	prediction	prediction	NOUN
bracis-28399	296	12	.	.	PUNCT
bracis-28399	297	1	brief	brief	ADJ
bracis-28399	297	2	.	.	PUNCT
bracis-28399	298	1	bioinform	bioinform	NOUN
bracis-28399	298	2	.	.	PUNCT
bracis-28399	299	1	23(2	23(2	NOUN
bracis-28399	299	2	)	)	PUNCT
bracis-28399	299	3	(	(	PUNCT
bracis-28399	299	4	2022	2022	NUM
bracis-28399	299	5	)	)	PUNCT
bracis-28399	299	6	google	google	PROPN
bracis-28399	299	7	scholar	scholar	NOUN
bracis-28399	299	8	  	  	SPACE
bracis-28399	299	9	zhu	zhu	PROPN
bracis-28399	299	10	,	,	PUNCT
bracis-28399	299	11	q.	q.	PROPN
bracis-28399	299	12	:	:	PUNCT
bracis-28399	299	13	on	on	ADP
bracis-28399	299	14	the	the	DET
bracis-28399	299	15	performance	performance	NOUN
bracis-28399	299	16	of	of	ADP
bracis-28399	299	17	matthews	matthews	PROPN
bracis-28399	299	18	correlation	correlation	NOUN
bracis-28399	299	19	coefficient	coefficient	NOUN
bracis-28399	299	20	(	(	PUNCT
bracis-28399	299	21	mcc	mcc	NOUN
bracis-28399	299	22	)	)	PUNCT
bracis-28399	299	23	for	for	ADP
bracis-28399	299	24	imbalanced	imbalanced	ADJ
bracis-28399	299	25	dataset	dataset	NOUN
bracis-28399	299	26	.	.	PUNCT
bracis-28399	300	1	pattern	pattern	NOUN
bracis-28399	300	2	recogn	recogn	PROPN
bracis-28399	300	3	.	.	PUNCT
bracis-28399	301	1	lett	lett	PROPN
bracis-28399	301	2	.	.	PROPN
bracis-28399	302	1	136	136	NUM
bracis-28399	302	2	,	,	PUNCT
bracis-28399	302	3	71–80	71–80	NUM
bracis-28399	302	4	(	(	PUNCT
bracis-28399	302	5	2020	2020	NUM
bracis-28399	302	6	)	)	PUNCT
bracis-28399	302	7	article	article	NOUN
bracis-28399	302	8	  	  	SPACE
bracis-28399	302	9	google	google	PROPN
bracis-28399	302	10	scholar	scholar	NOUN
bracis-28399	302	11	  	  	SPACE
bracis-28399	302	12	download	download	NOUN
bracis-28399	302	13	references	reference	NOUN
bracis-28399	302	14	acknowledgment	acknowledgment	VERB
bracis-28399	302	15	the	the	DET
bracis-28399	302	16	authors	author	NOUN
bracis-28399	302	17	would	would	AUX
bracis-28399	302	18	also	also	ADV
bracis-28399	302	19	like	like	VERB
bracis-28399	302	20	to	to	PART
bracis-28399	302	21	thank	thank	VERB
bracis-28399	302	22	the	the	DET
bracis-28399	302	23	coordenação	coordenação	NOUN
bracis-28399	302	24	de	de	PROPN
bracis-28399	302	25	aperfeiçoamento	aperfeiçoamento	PROPN
bracis-28399	302	26	de	de	X
bracis-28399	302	27	pessoal	pessoal	PROPN
bracis-28399	302	28	de	de	PROPN
bracis-28399	302	29	nível	nível	PROPN
bracis-28399	302	30	superior	superior	PROPN
bracis-28399	302	31	brazil	brazil	PROPN
bracis-28399	302	32	(	(	PUNCT
bracis-28399	302	33	capes	cape	NOUN
bracis-28399	302	34	)	)	PUNCT
bracis-28399	302	35	finance	finance	NOUN
bracis-28399	302	36	code	code	NOUN
bracis-28399	302	37	001	001	NOUN
bracis-28399	302	38	,	,	PUNCT
bracis-28399	303	1	fundacão	fundacão	PROPN
bracis-28399	303	2	de	de	PROPN
bracis-28399	303	3	amparo	amparo	PROPN
bracis-28399	303	4	à	à	PROPN
bracis-28399	303	5	pesquisa	pesquisa	PROPN
bracis-28399	303	6	do	do	AUX
bracis-28399	303	7	estado	estado	VERB
bracis-28399	303	8	de	de	PROPN
bracis-28399	303	9	minas	minas	PROPN
bracis-28399	303	10	gerais	gerais	PROPN
bracis-28399	303	11	(	(	PUNCT
bracis-28399	303	12	fapemig	fapemig	PROPN
bracis-28399	303	13	,	,	PUNCT
bracis-28399	303	14	grants	grant	NOUN
bracis-28399	303	15	apq-01518	apq-01518	ADJ
bracis-28399	303	16	-	-	PUNCT
bracis-28399	303	17	21	21	NUM
bracis-28399	303	18	,	,	PUNCT
bracis-28399	303	19	apq-01647	apq-01647	NOUN
bracis-28399	303	20	-	-	PUNCT
bracis-28399	303	21	22	22	NUM
bracis-28399	303	22	)	)	PUNCT
bracis-28399	303	23	,	,	PUNCT
bracis-28399	303	24	conselho	conselho	VERB
bracis-28399	303	25	nacional	nacional	PROPN
bracis-28399	303	26	de	de	X
bracis-28399	303	27	desenvolvimento	desenvolvimento	PROPN
bracis-28399	303	28	científico	científico	PROPN
bracis-28399	303	29	e	e	NOUN
bracis-28399	303	30	tecnológico	tecnológico	PROPN
bracis-28399	303	31	(	(	PUNCT
bracis-28399	303	32	cnpq	cnpq	NOUN
bracis-28399	303	33	,	,	PUNCT
bracis-28399	303	34	grants	grant	NOUN
bracis-28399	303	35	307151/2022	307151/2022	NUM
bracis-28399	303	36	-	-	SYM
bracis-28399	303	37	0	0	NUM
bracis-28399	303	38	,	,	PUNCT
bracis-28399	303	39	308400/2022	308400/2022	NUM
bracis-28399	303	40	-	-	SYM
bracis-28399	303	41	4	4	NUM
bracis-28399	303	42	)	)	PUNCT
bracis-28399	303	43	and	and	CCONJ
bracis-28399	303	44	universidade	universidade	PROPN
bracis-28399	303	45	federal	federal	PROPN
bracis-28399	303	46	de	de	PROPN
bracis-28399	303	47	ouro	ouro	PROPN
bracis-28399	303	48	preto	preto	PROPN
bracis-28399	303	49	(	(	PUNCT
bracis-28399	303	50	proppi	proppi	PROPN
bracis-28399	303	51	/	/	SYM
bracis-28399	303	52	ufop	ufop	NOUN
bracis-28399	303	53	)	)	PUNCT
bracis-28399	303	54	for	for	ADP
bracis-28399	303	55	supporting	support	VERB
bracis-28399	303	56	the	the	DET
bracis-28399	303	57	development	development	NOUN
bracis-28399	303	58	of	of	ADP
bracis-28399	303	59	this	this	DET
bracis-28399	303	60	study	study	NOUN
bracis-28399	303	61	.	.	PUNCT
bracis-28399	304	1	we	we	PRON
bracis-28399	304	2	want	want	VERB
bracis-28399	304	3	to	to	PART
bracis-28399	304	4	express	express	VERB
bracis-28399	304	5	our	our	PRON
bracis-28399	304	6	gratitude	gratitude	NOUN
bracis-28399	304	7	for	for	ADP
bracis-28399	304	8	the	the	DET
bracis-28399	304	9	collaboration	collaboration	NOUN
bracis-28399	304	10	of	of	ADP
bracis-28399	304	11	the	the	DET
bracis-28399	304	12	laboratório	laboratório	PROPN
bracis-28399	304	13	multiusuários	multiusuário	NOUN
bracis-28399	304	14	de	de	X
bracis-28399	304	15	bioinformática	bioinformática	NOUN
bracis-28399	304	16	of	of	ADP
bracis-28399	304	17	núcleo	núcleo	PROPN
bracis-28399	304	18	de	de	X
bracis-28399	304	19	pesquisas	pesquisas	PROPN
bracis-28399	304	20	em	em	PRON
bracis-28399	304	21	ciências	ciências	PROPN
bracis-28399	304	22	biológicas	biológicas	PROPN
bracis-28399	304	23	(	(	PUNCT
bracis-28399	304	24	nupeb	nupeb	NOUN
bracis-28399	304	25	/	/	SYM
bracis-28399	304	26	ufop	ufop	NOUN
bracis-28399	304	27	)	)	PUNCT
bracis-28399	304	28	.	.	PUNCT
bracis-28399	305	1	author	author	NOUN
bracis-28399	305	2	information	information	NOUN
bracis-28399	305	3	authors	author	NOUN
bracis-28399	305	4	and	and	CCONJ
bracis-28399	305	5	affiliations	affiliation	NOUN
bracis-28399	305	6	universidade	universidade	PROPN
bracis-28399	305	7	federal	federal	PROPN
bracis-28399	305	8	de	de	PROPN
bracis-28399	305	9	ouro	ouro	PROPN
bracis-28399	305	10	preto	preto	PROPN
bracis-28399	305	11	,	,	PUNCT
bracis-28399	305	12	ouro	ouro	NOUN
bracis-28399	305	13	preto	preto	PROPN
bracis-28399	305	14	-	-	PUNCT
bracis-28399	305	15	mg	mg	PROPN
bracis-28399	305	16	,	,	PUNCT
bracis-28399	305	17	brazil	brazil	PROPN
bracis-28399	305	18	lauro	lauro	PROPN
bracis-28399	305	19	moraes	moraes	PROPN
bracis-28399	305	20	,	,	PUNCT
bracis-28399	305	21	 	 	SPACE
bracis-28399	305	22	eduardo	eduardo	PROPN
bracis-28399	305	23	luz	luz	PROPN
bracis-28399	305	24	 	 	SPACE
bracis-28399	305	25	&	&	CCONJ
bracis-28399	305	26	 	 	SPACE
bracis-28399	305	27	gladston	gladston	PROPN
bracis-28399	305	28	moreira	moreira	PROPN
bracis-28399	305	29	authors	author	NOUN
bracis-28399	305	30	lauro	lauro	PROPN
bracis-28399	305	31	moraesview	moraesview	NOUN
bracis-28399	305	32	author	author	NOUN
bracis-28399	305	33	publications	publication	NOUN
bracis-28399	305	34	search	search	NOUN
bracis-28399	305	35	author	author	NOUN
bracis-28399	305	36	on	on	ADP
bracis-28399	305	37	:	:	PUNCT
bracis-28399	305	38	pubmed	pubmed	PROPN
bracis-28399	305	39	 	 	SPACE
bracis-28399	305	40	google	google	PROPN
bracis-28399	305	41	scholar	scholar	PROPN
bracis-28399	305	42	eduardo	eduardo	PROPN
bracis-28399	305	43	luzview	luzview	PROPN
bracis-28399	305	44	author	author	NOUN
bracis-28399	305	45	publications	publication	NOUN
bracis-28399	305	46	search	search	NOUN
bracis-28399	305	47	author	author	NOUN
bracis-28399	305	48	on	on	ADP
bracis-28399	305	49	:	:	PUNCT
bracis-28399	305	50	pubmed	pubmed	PROPN
bracis-28399	305	51	 	 	SPACE
bracis-28399	305	52	google	google	PROPN
bracis-28399	305	53	scholar	scholar	NOUN
bracis-28399	305	54	gladston	gladston	NOUN
bracis-28399	305	55	moreiraview	moreiraview	NOUN
bracis-28399	305	56	author	author	NOUN
bracis-28399	305	57	publications	publication	NOUN
bracis-28399	305	58	search	search	NOUN
bracis-28399	305	59	author	author	NOUN
bracis-28399	305	60	on	on	ADP
bracis-28399	305	61	:	:	PUNCT
bracis-28399	305	62	pubmed	pubmed	PROPN
bracis-28399	305	63	 	 	SPACE
bracis-28399	305	64	google	google	PROPN
bracis-28399	305	65	scholar	scholar	NOUN
bracis-28399	305	66	corresponding	correspond	VERB
bracis-28399	305	67	author	author	NOUN
bracis-28399	305	68	correspondence	correspondence	NOUN
bracis-28399	305	69	to	to	PART
bracis-28399	305	70	lauro	lauro	PROPN
bracis-28399	305	71	moraes	moraes	PROPN
bracis-28399	305	72	.	.	PUNCT
bracis-28399	306	1	editor	editor	NOUN
bracis-28399	306	2	information	information	NOUN
bracis-28399	306	3	editors	editor	NOUN
bracis-28399	306	4	and	and	CCONJ
bracis-28399	306	5	affiliations	affiliation	NOUN
bracis-28399	306	6	federal	federal	PROPN
bracis-28399	306	7	university	university	PROPN
bracis-28399	306	8	of	of	ADP
bracis-28399	306	9	são	são	PROPN
bracis-28399	306	10	carlos	carlos	PROPN
bracis-28399	306	11	,	,	PUNCT
bracis-28399	306	12	são	são	PROPN
bracis-28399	306	13	carlos	carlos	PROPN
bracis-28399	306	14	,	,	PUNCT
bracis-28399	306	15	brazil	brazil	PROPN
bracis-28399	306	16	murilo	murilo	PROPN
bracis-28399	306	17	c.	c.	PROPN
bracis-28399	306	18	naldi	naldi	PROPN
bracis-28399	306	19	centro	centro	PROPN
bracis-28399	306	20	universitario	universitario	PROPN
bracis-28399	306	21	da	da	PROPN
bracis-28399	306	22	fei	fei	PROPN
bracis-28399	306	23	,	,	PUNCT
bracis-28399	306	24	são	são	PROPN
bracis-28399	306	25	bernardo	bernardo	PROPN
bracis-28399	306	26	do	do	AUX
bracis-28399	306	27	campo	campo	PROPN
bracis-28399	306	28	,	,	PUNCT
bracis-28399	306	29	brazil	brazil	PROPN
bracis-28399	306	30	reinaldo	reinaldo	PROPN
bracis-28399	306	31	a.	a.	PROPN
bracis-28399	306	32	c.	c.	PROPN
bracis-28399	306	33	bianchi	bianchi	PROPN
bracis-28399	306	34	rights	right	NOUN
bracis-28399	306	35	and	and	CCONJ
bracis-28399	306	36	permissions	permission	NOUN
bracis-28399	306	37	reprints	reprint	NOUN
bracis-28399	306	38	and	and	CCONJ
bracis-28399	306	39	permissions	permission	VERB
bracis-28399	306	40	copyright	copyright	NOUN
bracis-28399	306	41	information	information	NOUN
bracis-28399	306	42	©	©	ADP
bracis-28399	306	43	2023	2023	NUM
bracis-28399	306	44	the	the	DET
bracis-28399	306	45	author(s	author(s	NOUN
bracis-28399	306	46	)	)	PUNCT
bracis-28399	306	47	,	,	PUNCT
bracis-28399	306	48	under	under	ADP
bracis-28399	306	49	exclusive	exclusive	ADJ
bracis-28399	306	50	license	license	NOUN
bracis-28399	306	51	to	to	ADP
bracis-28399	306	52	springer	springer	NOUN
bracis-28399	306	53	nature	nature	PROPN
bracis-28399	306	54	switzerland	switzerland	PROPN
bracis-28399	306	55	ag	ag	PROPN
bracis-28399	306	56	about	about	ADP
bracis-28399	306	57	this	this	DET
bracis-28399	306	58	paper	paper	NOUN
bracis-28399	306	59	cite	cite	VERB
bracis-28399	306	60	this	this	DET
bracis-28399	306	61	paper	paper	NOUN
bracis-28399	306	62	moraes	moraes	PROPN
bracis-28399	306	63	,	,	PUNCT
bracis-28399	306	64	l.	l.	PROPN
bracis-28399	306	65	,	,	PUNCT
bracis-28399	306	66	luz	luz	PROPN
bracis-28399	306	67	,	,	PUNCT
bracis-28399	306	68	e.	e.	PROPN
bracis-28399	306	69	,	,	PUNCT
bracis-28399	306	70	moreira	moreira	PROPN
bracis-28399	306	71	,	,	PUNCT
bracis-28399	306	72	g.	g.	PROPN
bracis-28399	306	73	(	(	PUNCT
bracis-28399	306	74	2023	2023	NUM
bracis-28399	306	75	)	)	PUNCT
bracis-28399	306	76	.	.	PUNCT
bracis-28399	307	1	physicochemical	physicochemical	ADJ
bracis-28399	307	2	properties	property	NOUN
bracis-28399	307	3	for	for	ADP
bracis-28399	307	4	 	 	SPACE
bracis-28399	307	5	promoter	promoter	NOUN
bracis-28399	307	6	classification	classification	NOUN
bracis-28399	307	7	.	.	PUNCT
bracis-28399	308	1	in	in	ADP
bracis-28399	308	2	:	:	PUNCT
bracis-28399	308	3	naldi	naldi	PROPN
bracis-28399	308	4	,	,	PUNCT
bracis-28399	308	5	m.c	m.c	PROPN
bracis-28399	308	6	.	.	PROPN
bracis-28399	308	7	,	,	PUNCT
bracis-28399	308	8	bianchi	bianchi	PROPN
bracis-28399	308	9	,	,	PUNCT
bracis-28399	308	10	r.a.c	r.a.c	ADP
bracis-28399	308	11	.	.	PUNCT
bracis-28399	308	12	(	(	PUNCT
bracis-28399	308	13	eds	ed	NOUN
bracis-28399	308	14	)	)	PUNCT
bracis-28399	308	15	intelligent	intelligent	ADJ
bracis-28399	308	16	systems	system	NOUN
bracis-28399	308	17	.	.	PUNCT
bracis-28399	309	1	bracis	bracis	PROPN
bracis-28399	309	2	2023	2023	NUM
bracis-28399	309	3	.	.	PUNCT
bracis-28399	310	1	lecture	lecture	NOUN
bracis-28399	310	2	notes	note	NOUN
bracis-28399	310	3	in	in	ADP
bracis-28399	310	4	computer	computer	NOUN
bracis-28399	310	5	science	science	NOUN
bracis-28399	310	6	(	(	PUNCT
bracis-28399	310	7	)	)	PUNCT
bracis-28399	310	8	,	,	PUNCT
bracis-28399	310	9	vol	vol	NOUN
bracis-28399	310	10	14196	14196	NUM
bracis-28399	310	11	.	.	PUNCT
bracis-28399	311	1	springer	springer	NOUN
bracis-28399	311	2	,	,	PUNCT
bracis-28399	311	3	cham	cham	PROPN
bracis-28399	311	4	.	.	PUNCT
bracis-28399	312	1	https://doi.org/10.1007/978-3-031-45389-2_25	https://doi.org/10.1007/978-3-031-45389-2_25	PROPN
bracis-28399	312	2	download	download	NOUN
bracis-28399	312	3	citation	citation	NOUN
bracis-28399	312	4	.ris	.ris	PUNCT
bracis-28399	312	5	.enw	.enw	PROPN
bracis-28399	313	1	.bib	.bib	PUNCT
bracis-28399	314	1	doi	doi	PROPN
bracis-28399	314	2	:	:	PUNCT
bracis-28399	314	3	https://doi.org/10.1007/978-3-031-45389-2_25	https://doi.org/10.1007/978-3-031-45389-2_25	PROPN
bracis-28399	314	4	published	publish	VERB
bracis-28399	314	5	:	:	PUNCT
bracis-28399	314	6	12	12	NUM
bracis-28399	314	7	october	october	PROPN
bracis-28399	314	8	2023	2023	NUM
bracis-28399	314	9	publisher	publisher	NOUN
bracis-28399	314	10	name	name	NOUN
bracis-28399	314	11	:	:	PUNCT
bracis-28399	314	12	springer	springer	NOUN
bracis-28399	314	13	,	,	PUNCT
bracis-28399	314	14	cham	cham	PROPN
bracis-28399	314	15	print	print	PROPN
bracis-28399	314	16	isbn	isbn	PROPN
bracis-28399	314	17	:	:	PUNCT
bracis-28399	314	18	978	978	NUM
bracis-28399	314	19	-	-	SYM
bracis-28399	314	20	3	3	NUM
bracis-28399	314	21	-	-	PUNCT
bracis-28399	314	22	031	031	NUM
bracis-28399	314	23	-	-	PUNCT
bracis-28399	314	24	45388	45388	NUM
bracis-28399	314	25	-	-	SYM
bracis-28399	314	26	5	5	NUM
bracis-28399	314	27	online	online	ADJ
bracis-28399	314	28	isbn	isbn	NOUN
bracis-28399	314	29	:	:	PUNCT
bracis-28399	314	30	978	978	NUM
bracis-28399	314	31	-	-	SYM
bracis-28399	314	32	3	3	NUM
bracis-28399	314	33	-	-	PUNCT
bracis-28399	314	34	031	031	NUM
bracis-28399	314	35	-	-	PUNCT
bracis-28399	314	36	45389	45389	NUM
bracis-28399	314	37	-	-	SYM
bracis-28399	314	38	2	2	NUM
bracis-28399	314	39	ebook	ebook	NOUN
bracis-28399	314	40	packages	package	NOUN
bracis-28399	314	41	:	:	PUNCT
bracis-28399	314	42	computer	computer	NOUN
bracis-28399	314	43	sciencecomputer	sciencecomputer	NOUN
bracis-28399	314	44	science	science	NOUN
bracis-28399	314	45	(	(	PUNCT
bracis-28399	314	46	r0	r0	NOUN
bracis-28399	314	47	)	)	PUNCT
bracis-28399	314	48	share	share	VERB
bracis-28399	314	49	this	this	DET
bracis-28399	314	50	paper	paper	NOUN
bracis-28399	314	51	anyone	anyone	PRON
bracis-28399	314	52	you	you	PRON
bracis-28399	314	53	share	share	VERB
bracis-28399	314	54	the	the	DET
bracis-28399	314	55	following	follow	VERB
bracis-28399	314	56	link	link	NOUN
bracis-28399	314	57	with	with	ADP
bracis-28399	314	58	will	will	AUX
bracis-28399	314	59	be	be	AUX
bracis-28399	314	60	able	able	ADJ
bracis-28399	314	61	to	to	PART
bracis-28399	314	62	read	read	VERB
bracis-28399	314	63	this	this	DET
bracis-28399	314	64	content	content	NOUN
bracis-28399	314	65	:	:	PUNCT
bracis-28399	314	66	get	get	VERB
bracis-28399	314	67	shareable	shareable	ADJ
bracis-28399	314	68	linksorry	linksorry	NOUN
bracis-28399	314	69	,	,	PUNCT
bracis-28399	314	70	a	a	DET
bracis-28399	314	71	shareable	shareable	ADJ
bracis-28399	314	72	link	link	NOUN
bracis-28399	314	73	is	be	AUX
bracis-28399	314	74	not	not	PART
bracis-28399	314	75	currently	currently	ADV
bracis-28399	314	76	available	available	ADJ
bracis-28399	314	77	for	for	ADP
bracis-28399	314	78	this	this	DET
bracis-28399	314	79	article	article	NOUN
bracis-28399	314	80	.	.	PUNCT
bracis-28399	315	1	copy	copy	VERB
bracis-28399	315	2	shareable	shareable	ADJ
bracis-28399	315	3	link	link	NOUN
bracis-28399	315	4	to	to	PART
bracis-28399	315	5	clipboard	clipboard	NOUN
bracis-28399	315	6	provided	provide	VERB
bracis-28399	315	7	by	by	ADP
bracis-28399	315	8	the	the	DET
bracis-28399	315	9	springer	springer	NOUN
bracis-28399	315	10	nature	nature	PROPN
bracis-28399	315	11	sharedit	sharedit	PROPN
bracis-28399	315	12	content	content	NOUN
bracis-28399	315	13	-	-	PUNCT
bracis-28399	315	14	sharing	share	VERB
bracis-28399	315	15	initiative	initiative	NOUN
bracis-28399	315	16	keywords	keyword	NOUN
bracis-28399	315	17	bioinformatics	bioinformatics	NOUN
bracis-28399	315	18	machine	machine	NOUN
bracis-28399	315	19	learning	learn	VERB
bracis-28399	315	20	physicochemical	physicochemical	ADJ
bracis-28399	315	21	properties	property	NOUN
bracis-28399	315	22	promoter	promoter	VERB
bracis-28399	315	23	classification	classification	NOUN
bracis-28399	315	24	publish	publish	NOUN
bracis-28399	315	25	with	with	ADP
bracis-28399	315	26	us	us	PROPN
bracis-28399	315	27	policies	policy	NOUN
bracis-28399	315	28	and	and	CCONJ
bracis-28399	315	29	ethics	ethic	NOUN
bracis-28399	315	30	profiles	profile	NOUN
bracis-28399	315	31	eduardo	eduardo	PROPN
bracis-28399	315	32	luz	luz	PROPN
bracis-28399	315	33	view	view	PROPN
bracis-28399	315	34	author	author	NOUN
bracis-28399	315	35	profile	profile	PROPN
bracis-28399	315	36	gladston	gladston	PROPN
bracis-28399	315	37	moreira	moreira	PROPN
bracis-28399	315	38	view	view	PROPN
bracis-28399	315	39	author	author	NOUN
bracis-28399	315	40	profile	profile	NOUN
bracis-28399	315	41	search	search	NOUN
bracis-28399	315	42	search	search	NOUN
bracis-28399	315	43	by	by	ADP
bracis-28399	315	44	keyword	keyword	NOUN
bracis-28399	315	45	or	or	CCONJ
bracis-28399	315	46	author	author	NOUN
bracis-28399	315	47	search	search	NOUN
bracis-28399	315	48	navigation	navigation	NOUN
bracis-28399	315	49	find	find	VERB
bracis-28399	315	50	a	a	DET
bracis-28399	315	51	journal	journal	NOUN
bracis-28399	315	52	publish	publish	VERB
bracis-28399	315	53	with	with	ADP
bracis-28399	315	54	us	we	PRON
bracis-28399	315	55	track	track	VERB
bracis-28399	315	56	your	your	PRON
bracis-28399	315	57	research	research	NOUN
bracis-28399	315	58	discover	discover	VERB
bracis-28399	315	59	content	content	NOUN
bracis-28399	315	60	journals	journal	NOUN
bracis-28399	315	61	a	a	DET
bracis-28399	315	62	-	-	PUNCT
bracis-28399	315	63	z	z	NOUN
bracis-28399	315	64	books	book	NOUN
bracis-28399	315	65	a	a	DET
bracis-28399	315	66	-	-	PUNCT
bracis-28399	315	67	z	z	NOUN
bracis-28399	315	68	publish	publish	NOUN
bracis-28399	315	69	with	with	ADP
bracis-28399	315	70	us	us	PROPN
bracis-28399	315	71	journal	journal	PROPN
bracis-28399	315	72	finder	finder	PROPN
bracis-28399	315	73	publish	publish	VERB
bracis-28399	315	74	your	your	PRON
bracis-28399	315	75	research	research	NOUN
bracis-28399	315	76	language	language	NOUN
bracis-28399	315	77	editing	edit	VERB
bracis-28399	315	78	open	open	ADJ
bracis-28399	315	79	access	access	NOUN
bracis-28399	315	80	publishing	publishing	NOUN
bracis-28399	315	81	products	product	NOUN
bracis-28399	315	82	and	and	CCONJ
bracis-28399	315	83	services	service	NOUN
bracis-28399	315	84	our	our	PRON
bracis-28399	315	85	products	product	NOUN
bracis-28399	315	86	librarians	librarian	VERB
bracis-28399	315	87	societies	society	NOUN
bracis-28399	315	88	partners	partner	NOUN
bracis-28399	315	89	and	and	CCONJ
bracis-28399	315	90	advertisers	advertiser	NOUN
bracis-28399	315	91	our	our	PRON
bracis-28399	315	92	brands	brand	NOUN
bracis-28399	315	93	springer	springer	NOUN
bracis-28399	315	94	nature	nature	PROPN
bracis-28399	315	95	portfolio	portfolio	PROPN
bracis-28399	315	96	bmc	bmc	PROPN
bracis-28399	315	97	palgrave	palgrave	PROPN
bracis-28399	315	98	macmillan	macmillan	PROPN
bracis-28399	315	99	apress	apress	PROPN
bracis-28399	315	100	discover	discover	VERB
bracis-28399	315	101	your	your	PRON
bracis-28399	315	102	privacy	privacy	NOUN
bracis-28399	315	103	choices	choice	NOUN
bracis-28399	315	104	/	/	SYM
bracis-28399	315	105	manage	manage	NOUN
bracis-28399	315	106	cookies	cookie	NOUN
bracis-28399	315	107	your	your	PRON
bracis-28399	315	108	us	us	PROPN
bracis-28399	316	1	state	state	NOUN
bracis-28399	316	2	privacy	privacy	NOUN
bracis-28399	316	3	rights	right	NOUN
bracis-28399	316	4	accessibility	accessibility	NOUN
bracis-28399	316	5	statement	statement	NOUN
bracis-28399	316	6	terms	term	NOUN
bracis-28399	316	7	and	and	CCONJ
bracis-28399	316	8	conditions	condition	NOUN
bracis-28399	316	9	privacy	privacy	NOUN
bracis-28399	316	10	policy	policy	NOUN
bracis-28399	316	11	help	help	NOUN
bracis-28399	316	12	and	and	CCONJ
bracis-28399	316	13	support	support	VERB
bracis-28399	316	14	legal	legal	ADJ
bracis-28399	316	15	notice	notice	NOUN
bracis-28399	316	16	cancel	cancel	VERB
bracis-28399	316	17	contracts	contract	NOUN
bracis-28399	316	18	here	here	ADV
bracis-28399	316	19	129.74.145.123	129.74.145.123	NUM
bracis-28399	316	20	hesburgh	hesburgh	PROPN
bracis-28399	316	21	library	library	PROPN
bracis-28399	316	22	er	er	INTJ
bracis-28399	316	23	unit	unit	NOUN
bracis-28399	316	24	(	(	PUNCT
bracis-28399	316	25	3005732405	3005732405	NUM
bracis-28399	316	26	)	)	PUNCT
bracis-28399	316	27	northeast	northeast	ADJ
bracis-28399	316	28	research	research	NOUN
bracis-28399	316	29	libraries	library	NOUN
bracis-28399	316	30	(	(	PUNCT
bracis-28399	316	31	nerl	nerl	PROPN
bracis-28399	316	32	)	)	PUNCT
bracis-28399	316	33	(	(	PUNCT
bracis-28399	316	34	8200828607	8200828607	NUM
bracis-28399	316	35	)	)	PUNCT
bracis-28399	316	36	nerl	nerl	VERB
bracis-28399	316	37	ta	ta	X
bracis-28399	316	38	account	account	NOUN
bracis-28399	316	39	(	(	PUNCT
bracis-28399	316	40	3006206169	3006206169	NUM
bracis-28399	316	41	)	)	PUNCT
bracis-28399	316	42	university	university	NOUN
bracis-28399	316	43	of	of	ADP
bracis-28399	316	44	notre	notre	PROPN
bracis-28399	316	45	dame	dame	PROPN
bracis-28399	316	46	hesburgh	hesburgh	PROPN
bracis-28399	316	47	library	library	NOUN
bracis-28399	316	48	(	(	PUNCT
bracis-28399	316	49	3000184373	3000184373	NUM
bracis-28399	316	50	)	)	PUNCT
bracis-28399	317	1	©	©	ADP
bracis-28399	317	2	2025	2025	NUM
bracis-28399	317	3	springer	springer	NOUN
bracis-28399	317	4	nature	nature	NOUN