ANNALS OF GEOPHYSICS, 60, 2, 2017; S0216; doi:10.4401/ag-7077 SEDA a software package for the Statistical Earthquake Data Analysis: a tutorial application to the 2009 L’Aquila and the 2012 Emilia (Italia) sequences Anna Maria Lombardi 1 1 Istituto Nazionale di Geofisica e Vulcanologia, Rome, Italy Article history Received September 6, 2016; accepted November 30, 2016. Subject classification: Earthquake interactions and probability, Statistical analysis, Algorithms and implementation. ABSTRACT The main purpose of this paper is to provide a tutorial application of SEDAv1.0, the first version of a software package, recently designed for the statistical analysis of earthquake data. SEDAv1.0 consists of a user-friendly Matlab-based interface, to facilitate the interaction with the application, and of a computational core of Fortran codes, to gua- rantee fast running times. The main part of SEDAv1.0 is devoted to the ETAS modeling. For the first time, an almost complete set of con- sistent tools based on ETAS models is collected in a single, free softwa- re. Moreover, SEDA guarantees the research reproducibility, which is becoming an increasingly major concern among scientists. The pecu- liarities of some routines of SEDAv1.0 are discussed in this paper, by the application to two important recent seismic sequences occurred in Italy. Specifically, the paper illustrates how using SEDAv1.0, to esti- mate the completeness magnitude and the b-value, to set and test the ETAS model and, finally, to identify the earthquakes sequences, basing on causal connections. 1. Introduction This paper describes the use of the first version of SEDA (Statistical Earthquake Data Analysis, SE- DAv1.0), a new software designed for the statistical analysis of earthquake data, by the application to two recent sequences occurred in Italy. The tools collected in SEDAv1.0 are classified in two main topics (Lombardi, 2016). The first class, cal- led Catalog Analysis, allows the descriptive analysis of an earthquake catalog, the selection of its subsets and the estimation of the magnitude distribution. This set of tools includes original, but not innovative, codes and supports the user, in managing the database and in evaluating its homogeneity and magnitude com- pleteness. The second group of tools, called ETAS Model, is designed for the analysis of an earthquake database by the ETAS (Epidemic Type Aftershock Se- quence) modeling (Ogata, 1988; 1998). It is the core of SEDAv1.0 and contains original and partially innova- tive Fortran codes. The design of software as SEDAv1.0 is requested by the code share policy, which is a main point for the reproducibility of published research results and hi- ghly recommended by the most important scientific journals (Nature Editors, 2014a). Sharing a code means that the source or the executable code is freely acces- sible to the public. This allows replication of results, which is a key concept in science, and ensures that the scientific community can apply the methodology to their own data, without the need of re-implemen- ting the algorithms. Moreover, the free distribution of a code allows the evaluation of its performance and helps the comparison of different methodologies. SEDAv1.0 is freely provided via the Zenodo open access platform (https://zenodo.org/), a service that allows deposit and DOI assignment to software, besi- des of ensuring an easy and stable access. Please refer to https://zenodo.org/record/55277 to download the first version of SEDA for the MAC operating system (a Windows version will be available soon), including the User Manual. Some technical details about SEDAv1.0 are discussed also in Lombardi (2016). This paper illustrates the use of SEDAv1.0, by mean of an application to two important sequences, occurred in Italy in the last years, following the L’Aqui- la (April 6, 2009, ML5.9) and the Emilia (May 20, 2012, ML5.9) earthquakes (see Figure 1). Firstly, I estimate the completeness and the b-value for the magnitude distribution. Second, the ETAS model, implemented in SEDAv1.0, is applied and tested on both sequences. Finally, the procedure for sequences identification is presented and discussed. S0216 LOMBARDI 2. Cases Study: the 2009 ML5.9 L’Aquila and the 2012 ML5.9 Emilia sequences The L’Aquila and the Emilia sequences are loca- ted in areas with different tectonic structure and have specific peculiarities. The L’Aquila region is inside the Central Apennines belt, with prevalent normal faul- ting, whereas the Emilia area covers alluvial lowland, with thrust faulting. The L’Aquila mainshock was pre- ceded by at least 3 months of moderate-size seismicity and struck an highly hazardous seismic zone of Italy (Stucchi et al., 2010). The Emilia sequence, occurred in a relatively low seismic hazard area, was characteri- zed by a migration of the seismicity towards the E and NE and its strongest aftershock (May 29, 2012, ML5.8) has a magnitude close to the mainshock. The data of the Italian seismicity are downloaded from the site of the official INGV bulletin, www.isi- de.rm.ingv.it. I select the events occurred from April 16, 2005 up to April 30 2016. The starting data marks the start-up of a new seismic network, causing a si- gnificant improvement of the earthquakes detection (Bono and Badiali, 2005; Schorlemmer et al., 2010). The areas interested by the L’Aquila and the Emi- lia sequences are [13.15-13.65E, 42.10-42.70N] and [10.60-11.80E, 44.70-45.10N], respectively (see Figu- re 1). The INGV bulletin collects 29,787 events (ML from 0.1 to 5.9 and depth above 28km), inside the first area, and 3,014 earthquakes (ML from 1.2 to 5.9 and depth above 37km), in the Emilia region. The lower minimum magnitude of the L’Aquila dataset is due to 5˚ 5˚ 10˚ 15˚ 15˚ 20˚ 20˚ 35˚ 35˚ 40˚ 40˚ 45˚ 45˚ 0 4 8 12 16 20 24 28 32 36 40 13˚30' 42˚30' 11˚00' 11˚30' 45˚00' de pt h L’Aquila Emilia Figure 1. Map of Italian seismicity, occurred from 04/16/2005 to 01/05/2016, with magnitude above ML2.5 and depth above 40kms. The blue rectangles identify the areas of the two most important sequences of the last years: the April 6, 2009 L’Aquila (ML5.9) and the May 20, 2012 Emilia (ML5.9) sequences, of which seismicity is zoomed in the smaller panels. Blue stars mark the events with magnitude above ML5.0. 2 A TUTORIAL APPLICATION OF SOFTWARE SEDA the dense seismic network in this zone, whereas the deeper events of the Emilia region are generated from the deep thrusting structures, well-recognized in this zone (Vannoli et al., 2015). In the following sections I present and discuss the data analysis. The title of each of them contains, in the brackets, the reference to the SEDAv1.0 tools, used for the specific application discussed inside. All the resul- ts refer to a retrospective analysis: the parameters of the ETAS model are set on relocated earthquake data, including those of the L’Aquila and Emilia sequen- ces. This strongly differs from the purely prospecti- ve, real-time earthquake forecast experiments, made during the L’Aquila and the Emilia seismic emergen- cies, using provisional data and models independently set (Marzocchi and Lombardi, 2009; Marzocchi et al., 2012). 3. Completeness Magnitude and b-value estimation (Catalog Analysis tool “B-value analysis”) This first part of SEDAv1.0 is devoted to a quick descriptive analysis of an earthquake catalog, inclu- ding the subsets selection and the magnitude comple- teness and b-value analysis (Lombardi, 2016). In SEDAv1.0 the Gutenberg-Richer Law is adop- ted for magnitudes; it has the following probability density function (1) where β=b⋅ln(10) is a parameter and Mc is the com- pleteness magnitude of the database. Further magni- tude distributions will be added in future versions. SEDAv1.0 assumes a magnitude step of 0.1 and uses two methods to estimate b and Mc: the Mc and B-value Stability method (MBS; Cao and Gao, 2002; Woessner and Wiemer, 2005) and the Goodness of Fit Test method (GFT; Wiemer and Wyss, 2000). This last is performed in SEDAv1.0 both at 90% and at 95% confidence levels. Moreover, SEDAv1.0 fixes a magni- tude range equal to 0.5 to calculate the b-value me- ans for the MBS method (see Woessner and Wiemer, 2005, for details). I run the SEDAv1.0 “B-value analysis” tool on the L’Aquila and Emilia databases. Previous studies, based on the National Seismic Network detection, defined Mc = 2.5 as a reasonable completeness ma- gnitude for most of the Italian territory, starting from April 16 2005 (Schorlemmer et al., 2010). By ap- plying the SEDAv1.0 “B-value analysis” tool on the L’Aquila region, I find a completeness local magni- tude Mc=1.2, 1.5 and 1.8 by mean of the GFT(90%), GFT(95%) and MBS methods, respectively (Table 1). The related b-values are b=0.85, 1.0 and 1.1. I find larger, more consistent, values of Mc=2.1, 2.2, 2.2 for the Emilia area, while the related b-values are b=0.9, 0.97, 0.97. The larger completeness magnitude of the Emilia region, respect to L’Aquila area, is due to the larger depth of the events and to the lower detection of the National Seismic Network. All the above resul- ts are consistent with Schorlemmer et al. (2010). Previous estimation does not take into account any possible temporal variations of the complete- ness magnitude. Figure 2 shows the time/magnitu- de plots of the seismicity, soon after the occurrence of the strongest events of both sequences (April 06 2009, ML5.9, for the L’Aquila sequence; May 20 2012, ML5.9, and May 29 2012, ML 5.8, for the Emilia se- quence). They reveal an increase of the minimum detection magnitude up to ML2.5. The values of Mc and b, estimated on the seismicity of the first 12 hours after the strongest events, are reported in Table1. For both sequences there is a significant increase of Mc, up to ML2.5, respect to the overall sequence. Moreo- ver, the b-values decrease down to 0.7, in the Emilia region. For all above said, I select the events above Mc=2.5 for both sequences. The inferred b-values are 1.1 and 1.0 for the L’Aquila (1153 events) and the Emilia (964 events) regions, respectively (see Table1 and Figure 3). f (m)= β ⋅exp −β ⋅ m−Mc( )⎡⎣ ⎤⎦ 2012.3825 2012.383 2012.3835 2012.384 2012.3845 2012.385 2012.3855 1.5 2 2.5 3 3.5 4 4.5 5 5.5 6 2009.26 2009.2605 2009.261 2009.2615 2009.262 2009.2625 2009.263 2009.2635 1.5 2 2.5 3 3.5 4 4.5 5 5.5 6 Time (year) M ag ni tu de L’Aquila Emilia 2012.407 2012.4075 2012.408 2012.4085 2012.409 2012.4095 2012.41 1.5 2 2.5 3 3.5 4 4.5 5 5.5 6 EmiliaML5.8 29 May 2012 ML5.9 20 May 2012 ML5.9 06 April 2009 Figure 2. Time-magnitude plot for the events occurred in the first day, after the strongest events, of the L’Aquila and the Emilia se- quences. The plot shows an increase of the detection in the first hours after their occurrence. 3 LOMBARDI Magnitude 0 1 2 3 4 5 6 Lo g1 0 of N um be r of E ar th qu ak es 0 0.5 1 1.5 2 2.5 3 3.5 4 4.5 Fixed Mc Cumulative Number Histogram GR Fit b Fix MC = 0.31 (0.00) MC: 2.5 b Fix MC = 1.08 (0.03) Magnitude 1 2 3 4 5 6 Lo g1 0 of N um be r of E ar th qu ak es 0 0.5 1 1.5 2 2.5 3 3.5 Fixed Mc Cumulative Number Histogram GR Fit b Fix MC = 0.37 (0.00) MC: 2.5 b Fix MC = 0.99 (0.04) a) b) Figure 3. B-value estimation for the L’Aquila and the Emilia databa- ses, obtained by SEDAv1.0, fixing Mc=2.5. 4. ETAS Model The core of SEDAv1.0 is a set of tools related to the temporal-magnitude (TM) and the time-magnitu- de-space (TMS) ETAS modeling. A so comprehensive set of tools, based on ETAS, is collected in a single, free software, for the first time. Some packages are been de- veloped and made available in the past, but they refer to different versions of the ETAS model and allow only a partial analysis of an earthquake catalog (see Lombardi, 2016, for a comprehensive list). SEDAv1.0 collects two classes of tools, based on the ETAS model. Specifically, the ETAS Basic tools are the most important algorithms concerning an ETAS model. They allow the estimation of the model (para- meters and background), the log-likelihood calculation, the declustering of the catalog, the testing of an ETAS model on data, forecasting calculations and the simula- tions of earthquakes databases. The ETAS Additional tools are designed to deep the investigation of a catalog. They allow the calculation of the background/trigge- ring probabilities for all events, the selection of sequen- ces and the computation of retrospective forecasts. The conditional intensities of the TM and TMS ETAS models, implemented in SEDA are, respectively: (2) where f(m) = β ⋅exp −β ⋅(m−Mc)[ ] 1−exp −β ⋅(Mmax −Mc)[ ] is the magnitude pro- bability density function and Mmax is the maximum magnitude allowed; Ht is the history of the process up the time t; λTM t,m|Ht( )= µ+ k⋅exp α ⋅ Mi −Mc( )⎡⎣ ⎤⎦ (t −Ti +c) p Ti95% and are more stable for smaller values of PL, down to about 75% for L’Aquila and 60% for Emilia. The remaining values of PL are probably too small for an unequivocal assignment of the events to the sequences, given also the limited size of both catalogs, due to the relatively high value of Mc. 4.4 Retrospective forecast (ETAS Additional tool “Re- trospective Forecast”) The retrospective forecast gives a further possibi- lity to test a model. The “Retrospective Forecast” SE- DAv1.0 tool was implemented in a module apart from the other tests, among the ETAS additional tools, sin- ce it is not still a formalized test. It currently consists in comparing the overall expected number of events above a magnitude MF≥Mc, given by the catalog, with the analogue values, given by a certain number of si- mulated catalogs. Specifically, SEDAv1.0 computes the forecasts fri TM (TM model) and frij TMS (TMS model) (i.e. the number of expected events, conditional on the past) for the i-th simulated catalog, by the formulae (7) where Ht i is the history up time t, collected in the i-th simulated catalog. These quantities represent a proba- bility distribution for the ETAS forecasts and give the probabilities to have larger values of the “observed” expected values frTM or frj TMS, obtained by replacing the actual observed history Ht, in formulas (7). The retrospective forecast can provide an impor- A TUTORIAL APPLICATION OF SOFTWARE SEDA Pi Ej( )= 1 isi ,k=isj ,k{ }k=1 NRUN ∑ NRUN Figure 10. Screenshot from SEDAv1.0 showing the results of the L’A- quila sequence identification for PL=0.95, choosing as target event the mainshock (April 6 2009, ML5.9; see text for details). The figure shows the time-magnitude plot of the identified events. Figure 11. Temporal limits (blue line) and number of events (red line) as functions of the probability threshold PL for both the L’A- quila and the Emilia sequences. The target events are the main- shocks (April 06 2009 ML 5.9 for the L’Aquila and May 20 2012 ML 5.9 for the Emilia). The probability threshold PL goes from 0 to 1, with a step of 0.01 (see text for details). PL 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1 TI M E 01/01/09 01/01/10 01/01/11 01/01/12 01/01/13 01/01/14 01/01/15 01/01/16 01/01/17 L’Aquila N E V 400 600 800 1000 1200 PL 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1 TI M E 01/01/12 01/01/13 01/01/14 01/01/15 01/01/16 01/01/17 Emilia N E V 600 800 1000 fri TM = λTMMF Mmax ∫T1 T 2 ∫ (t,m|Hti)dtdm - - - frij TMS = λ(t,x,y,m|Ht i )dtdxdydm MF Mmax ∫C j∫∫T1 T2 ∫ 9 LOMBARDI tant feedback, regarding the performance of the ETAS model and may be applied in different way, by varying the forecast time period or the threshold forecast ma- gnitude MF. Two specific applications are shown in the fol- lowing. The first is an evaluation of the probability to have an event above ML5.0, in the L’Aquila area, during the day April 06 2009, when the mainshock actually occurred. In the second example, I compute the probability to have an event above ML5.5, during the day May 29 2012, in which the strongest aftershock occurred (see Figure 12). In the first example, I set as learning period April 16 2005, 00:00:00 - April 06 2009, 00:00:00 and I compu- tes the forecasts frij TMS by mean of 10,000 simulations. The value of MF is 5.0 and the forecast period is April 06 2009, 00:00:00 - April 07 2009, 00:00:00. The overall median expected rate median{ } is equal to 0.0039 (the 95% confidence interval is [0.0029 0.015]). The observed value is equal to 0.32 that is outside the inferred distribution. 3 on 10,000 si- mulated catalogs have 2 events above ML5.0, as actual- ly occurred in the forecast day. In the second example, related to the Emilia se- quence, the forecast period is May 29 2012, 00:00:00 – May 30 2012, 00:00:00 and MF=5.5. SEDAv1.0 gives an overall median expected rate equal to 0.0071 and a 95% confidence interval [0.0042 0.021]. The observed value is 0.16 that is outside the inferred distribution. 90 simulated catalogs on 10,000 have 1 event above ML5.5, at least, as actually observed. The comparison of these last results with tho- se obtained by the model testing (see subsection 4.2) shows a good ability of the ETAS model to reproduce the overall seismic rate, but also the “unpredictability” of the time occurrence of specific strong shocks. 5. Conclusions: the future of SEDA The program SEDA, presented in this paper, has been developed with the main aim of allowing an easy use of the tools. Specifically, the Matlab GUI facilitates the user control and allows the display of the results. Moreover the modular design of the GUI allows an easy upgrade of the actual version and the inclusion of new modules. For the first time, the most important operations concerning the ETAS model are collected in a single, free, user-friendly, software. From a scientific point of view, the most important novelties are the estimation method: this ensures the reaching of the overall best solution and gives an effective evaluation of the model uncertainties. Particular care has been taken in develo- ping the algorithms for the model testing and for the identification of sequences. SEDA has been developed in order to guarantee the reproducibility of research. The computational methods used in many published papers are often not fully explained or described. This is due both to con- frij TMS j=1 Nc ∑ ;i =1,...,10000 a) b) Figure 12. Screenshots from SEDAv1.0 showing the results of the retrospective forecasting for the L’Aquila and the Emilia sequences. a) Re- trospective forecasting of the seismicity occurred from April 06 2009, 00:00:00 to April 07 2009, 00:00:00, in the L’Aquila area, with MF=5.0 and 10,000 simulations. The histogram shows the distribution of the number of events above 5.0 for the simulations. The observed number is 2. b) Retrospective forecasting of the seismicity occurred from May 29 2012, 00:00:00 to May 30 2012, 00:00:00, in the Emilia area, with MF=5.5 and 10,000 simulations. The map shows the spatial distribution of the expected median number of events (median { }) above 5.5 for each cell Cj (of size 0.01°x0.01°). frjj=1 Nc ∑ TMS frij TMS j=1 Nc ∑ ;i =1,...,10000 10 straints imposed by the traditional research papers and to the reluctance to share intellectual property. As a consequence, it is difficult to reproduce research resul- ts, to verify their correctness and to build on them in future research and applications. Reproducible resear- ch has become a prominent issue in several academic fields (see, for example, Liu et al., 2015; Irving, 2015, among many others published papers). Journals as Science and Nature have published numerous articles about reproducibility and editorials in favor of policies that promote open science. Finally the code sharing should at least lead to better quality of codes themsel- ves (Nature Editors, 2014a; 2014b; McNutt, 2014; Geo- scientific Model Development Editors, 2013). The main aim of this paper is to provide a tuto- rial example for the use of SEDAv1.0, but it gives also important information on the ETAS modeling. The analysis reported here clearly shows that the two sets of ETAS parameters, estimated on the L’Aquila and the Emilia regions, are surprisingly very similar, con- sidering the different regional tectonic settings of two sequences. Significant differences are found only for the μ and α parameters (see Table 2). The first para- meter is a proxy of the seismic potential of the zone and the estimated values reveal the lower hazard of the Emilia region. The α parameter is related to the magnitude distribution and to the presence of large aftershocks in major sequences. The magnitude distri- bution of the Emilia dataset shows a clear bump for magnitudes above ML4.5. The L’Aquila sequence has 5 aftershocks above ML5.0, with a magnitude ranging from ML5.0 to ML5.4, whereas the Emilia sequence has 8 aftershocks above ML5.0, having a maximum magnitude equal to ML5.8. This may be the reason of the lower α value estimated for the Emilia dataset. The tests of the ETAS models and the retro- spective forecast calculations reveal a good agreement with observations (see Figures 8 and 9). Specifically, the inferred models are able to predict the temporal evolution of the overall rate, without the inclusion of time-varying parameters. Nevertheless, they do not have good skill in forecasting specific large earthqua- kes and the following sudden increase of the seismic rate (Figure 12). The future of SEDA is somewhat unclear and will be driven by research interests and by the collabora- tions, besides of suggestions and criticism. Anyway, some advances and improvements are already schedu- led (Lombardi, 2016). 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Res., 109. *Corresponding author: Anna Maria Lombardi, Istituto Nazionale di Geofisica e Vulcanologia, Rome, Italy email: annamaria.lombardi@ingv.it 2017 by Istituto Nazionale di Geofisica e Vulcanologia. All rights reserved 12