id	sid	tid	token	lemma	pos
arestyrurj-175	1	1	aresty	aresty	PROPN
arestyrurj-175	1	2	rutgers	rutgers	PROPN
arestyrurj-175	1	3	undergraduate	undergraduate	PROPN
arestyrurj-175	1	4	research	research	PROPN
arestyrurj-175	1	5	journal	journal	PROPN
arestyrurj-175	1	6	,	,	PUNCT
arestyrurj-175	1	7	volume	volume	NOUN
arestyrurj-175	1	8	i	i	PRON
arestyrurj-175	1	9	,	,	PUNCT
arestyrurj-175	1	10	issue	issue	VERB
arestyrurj-175	1	11	iii	iii	NOUN
arestyrurj-175	1	12	this	this	DET
arestyrurj-175	1	13	work	work	NOUN
arestyrurj-175	1	14	is	be	AUX
arestyrurj-175	1	15	licensed	license	VERB
arestyrurj-175	1	16	under	under	ADP
arestyrurj-175	1	17	a	a	DET
arestyrurj-175	1	18	creative	creative	ADJ
arestyrurj-175	1	19	commons	common	NOUN
arestyrurj-175	1	20	attribution	attribution	NOUN
arestyrurj-175	1	21	-	-	PUNCT
arestyrurj-175	1	22	noncommercial	noncommercial	ADJ
arestyrurj-175	1	23	-	-	PUNCT
arestyrurj-175	1	24	sharealike	sharealike	ADJ
arestyrurj-175	1	25	4.0	4.0	NUM
arestyrurj-175	1	26	international	international	ADJ
arestyrurj-175	1	27	license	license	NOUN
arestyrurj-175	1	28	.	.	PUNCT
arestyrurj-175	2	1	vitamin	vitamin	NOUN
arestyrurj-175	2	2	d	d	NOUN
arestyrurj-175	2	3	receptor	receptor	NOUN
arestyrurj-175	2	4	binding	bind	VERB
arestyrurj-175	2	5	with	with	ADP
arestyrurj-175	2	6	dna	dna	PROPN
arestyrurj-175	2	7	in	in	ADP
arestyrurj-175	2	8	duodenal	duodenal	ADJ
arestyrurj-175	2	9	crypt	crypt	NOUN
arestyrurj-175	2	10	,	,	PUNCT
arestyrurj-175	2	11	duodenal	duodenal	ADJ
arestyrurj-175	2	12	villi	villi	NOUN
arestyrurj-175	2	13	,	,	PUNCT
arestyrurj-175	2	14	&	&	CCONJ
arestyrurj-175	2	15	colonic	colonic	ADJ
arestyrurj-175	2	16	epithelial	epithelial	ADJ
arestyrurj-175	2	17	cells	cell	NOUN
arestyrurj-175	2	18	of	of	ADP
arestyrurj-175	2	19	mice	mouse	NOUN
arestyrurj-175	2	20	dennis	dennis	PROPN
arestyrurj-175	2	21	a.	a.	PROPN
arestyrurj-175	2	22	aldea	aldea	PROPN
arestyrurj-175	2	23	,	,	PUNCT
arestyrurj-175	2	24	rohit	rohit	PROPN
arestyrurj-175	2	25	aita	aita	PROPN
arestyrurj-175	2	26	,	,	PUNCT
arestyrurj-175	2	27	sohaib	sohaib	PROPN
arestyrurj-175	2	28	hassan	hassan	PROPN
arestyrurj-175	2	29	,	,	PUNCT
arestyrurj-175	2	30	evan	evan	PROPN
arestyrurj-175	2	31	s.	s.	PROPN
arestyrurj-175	2	32	cohen	cohen	PROPN
arestyrurj-175	2	33	,	,	PUNCT
arestyrurj-175	2	34	joseph	joseph	PROPN
arestyrurj-175	2	35	hur	hur	PROPN
arestyrurj-175	2	36	,	,	PUNCT
arestyrurj-175	2	37	oscar	oscar	NOUN
arestyrurj-175	2	38	pellón	pellón	NOUN
arestyrurj-175	2	39	-	-	PUNCT
arestyrurj-175	2	40	cárdenas	cárdenas	PROPN
arestyrurj-175	2	41	,	,	PUNCT
arestyrurj-175	2	42	lei	lei	PROPN
arestyrurj-175	2	43	chen	chen	PROPN
arestyrurj-175	2	44	,	,	PUNCT
arestyrurj-175	2	45	michael	michael	PROPN
arestyrurj-175	2	46	p.	p.	PROPN
arestyrurj-175	2	47	verzi	verzi	PROPN
arestyrurj-175	2	48	(	(	PUNCT
arestyrurj-175	2	49	faculty	faculty	NOUN
arestyrurj-175	2	50	advisor	advisor	NOUN
arestyrurj-175	2	51	)	)	PUNCT
arestyrurj-175	2	52	✵	✵	PROPN
arestyrurj-175	2	53	abstract	abstract	ADJ
arestyrurj-175	2	54	vitamin	vitamin	NOUN
arestyrurj-175	2	55	d	d	NOUN
arestyrurj-175	2	56	receptor	receptor	NOUN
arestyrurj-175	2	57	(	(	PUNCT
arestyrurj-175	2	58	vdr	vdr	NOUN
arestyrurj-175	2	59	)	)	PUNCT
arestyrurj-175	2	60	is	be	AUX
arestyrurj-175	2	61	a	a	DET
arestyrurj-175	2	62	transcription	transcription	NOUN
arestyrurj-175	2	63	factor	factor	NOUN
arestyrurj-175	2	64	that	that	PRON
arestyrurj-175	2	65	mediates	mediate	VERB
arestyrurj-175	2	66	calcium	calcium	NOUN
arestyrurj-175	2	67	absorption	absorption	NOUN
arestyrurj-175	2	68	by	by	ADP
arestyrurj-175	2	69	intestinal	intestinal	ADJ
arestyrurj-175	2	70	epithelial	epithelial	ADJ
arestyrurj-175	2	71	cells	cell	NOUN
arestyrurj-175	2	72	.	.	PUNCT
arestyrurj-175	3	1	although	although	SCONJ
arestyrurj-175	3	2	calcium	calcium	NOUN
arestyrurj-175	3	3	absorption	absorption	NOUN
arestyrurj-175	3	4	is	be	AUX
arestyrurj-175	3	5	canonically	canonically	ADV
arestyrurj-175	3	6	thought	think	VERB
arestyrurj-175	3	7	to	to	PART
arestyrurj-175	3	8	occur	occur	VERB
arestyrurj-175	3	9	only	only	ADV
arestyrurj-175	3	10	in	in	ADP
arestyrurj-175	3	11	the	the	DET
arestyrurj-175	3	12	small	small	ADJ
arestyrurj-175	3	13	intestine	intestine	NOUN
arestyrurj-175	3	14	,	,	PUNCT
arestyrurj-175	3	15	recent	recent	ADJ
arestyrurj-175	3	16	studies	study	NOUN
arestyrurj-175	3	17	have	have	AUX
arestyrurj-175	3	18	shown	show	VERB
arestyrurj-175	3	19	that	that	SCONJ
arestyrurj-175	3	20	vdr	vdr	NOUN
arestyrurj-175	3	21	activity	activity	NOUN
arestyrurj-175	3	22	in	in	ADP
arestyrurj-175	3	23	the	the	DET
arestyrurj-175	3	24	colon	colon	NOUN
arestyrurj-175	3	25	alone	alone	ADV
arestyrurj-175	3	26	is	be	AUX
arestyrurj-175	3	27	sufficient	sufficient	ADJ
arestyrurj-175	3	28	to	to	PART
arestyrurj-175	3	29	prevent	prevent	VERB
arestyrurj-175	3	30	calcium	calcium	NOUN
arestyrurj-175	3	31	deficiency	deficiency	NOUN
arestyrurj-175	3	32	in	in	ADP
arestyrurj-175	3	33	mice	mouse	NOUN
arestyrurj-175	3	34	.	.	PUNCT
arestyrurj-175	4	1	here	here	ADV
arestyrurj-175	4	2	,	,	PUNCT
arestyrurj-175	4	3	we	we	PRON
arestyrurj-175	4	4	further	far	ADV
arestyrurj-175	4	5	investigate	investigate	VERB
arestyrurj-175	4	6	vdr	vdr	NOUN
arestyrurj-175	4	7	activity	activity	NOUN
arestyrurj-175	4	8	in	in	ADP
arestyrurj-175	4	9	the	the	DET
arestyrurj-175	4	10	colon	colon	NOUN
arestyrurj-175	4	11	.	.	PUNCT
arestyrurj-175	5	1	we	we	PRON
arestyrurj-175	5	2	assess	assess	VERB
arestyrurj-175	5	3	vdr	vdr	NOUN
arestyrurj-175	5	4	-	-	PUNCT
arestyrurj-175	5	5	dna	dna	NOUN
arestyrurj-175	5	6	binding	bind	VERB
arestyrurj-175	5	7	in	in	ADP
arestyrurj-175	5	8	mouse	mouse	NOUN
arestyrurj-175	5	9	duodenal	duodenal	ADJ
arestyrurj-175	5	10	crypt	crypt	NOUN
arestyrurj-175	5	11	,	,	PUNCT
arestyrurj-175	5	12	duodenal	duodenal	ADJ
arestyrurj-175	5	13	villi	villi	NOUN
arestyrurj-175	5	14	,	,	PUNCT
arestyrurj-175	5	15	and	and	CCONJ
arestyrurj-175	5	16	colonic	colonic	ADJ
arestyrurj-175	5	17	epithelial	epithelial	ADJ
arestyrurj-175	5	18	cells	cell	NOUN
arestyrurj-175	5	19	using	use	VERB
arestyrurj-175	5	20	chromatin	chromatin	NOUN
arestyrurj-175	5	21	immunoprecipitation	immunoprecipitation	NOUN
arestyrurj-175	5	22	sequencing	sequence	VERB
arestyrurj-175	5	23	(	(	PUNCT
arestyrurj-175	5	24	chip	chip	NOUN
arestyrurj-175	5	25	-	-	PUNCT
arestyrurj-175	5	26	seq	seq	NOUN
arestyrurj-175	5	27	)	)	PUNCT
arestyrurj-175	5	28	.	.	PUNCT
arestyrurj-175	6	1	we	we	PRON
arestyrurj-175	6	2	find	find	VERB
arestyrurj-175	6	3	that	that	SCONJ
arestyrurj-175	6	4	most	most	ADJ
arestyrurj-175	6	5	vdr	vdr	NOUN
arestyrurj-175	6	6	-	-	PUNCT
arestyrurj-175	6	7	responsive	responsive	ADJ
arestyrurj-175	6	8	elements	element	NOUN
arestyrurj-175	6	9	are	be	AUX
arestyrurj-175	6	10	common	common	ADJ
arestyrurj-175	6	11	to	to	ADP
arestyrurj-175	6	12	all	all	DET
arestyrurj-175	6	13	intestinal	intestinal	ADJ
arestyrurj-175	6	14	epithelial	epithelial	ADJ
arestyrurj-175	6	15	cells	cell	NOUN
arestyrurj-175	6	16	,	,	PUNCT
arestyrurj-175	6	17	though	though	SCONJ
arestyrurj-175	6	18	some	some	DET
arestyrurj-175	6	19	vdr	vdr	NOUN
arestyrurj-175	6	20	-	-	PUNCT
arestyrurj-175	6	21	responsive	responsive	ADJ
arestyrurj-175	6	22	elements	element	NOUN
arestyrurj-175	6	23	are	be	AUX
arestyrurj-175	6	24	regionally	regionally	ADV
arestyrurj-175	6	25	-	-	PUNCT
arestyrurj-175	6	26	enriched	enrich	VERB
arestyrurj-175	6	27	and	and	CCONJ
arestyrurj-175	6	28	exhibit	exhibit	VERB
arestyrurj-175	6	29	greater	great	ADJ
arestyrurj-175	6	30	vdr	vdr	NOUN
arestyrurj-175	6	31	-	-	PUNCT
arestyrurj-175	6	32	binding	bind	VERB
arestyrurj-175	6	33	affinity	affinity	NOUN
arestyrurj-175	6	34	in	in	ADP
arestyrurj-175	6	35	either	either	CCONJ
arestyrurj-175	6	36	duodenal	duodenal	ADJ
arestyrurj-175	6	37	epithelial	epithelial	ADJ
arestyrurj-175	6	38	cells	cell	NOUN
arestyrurj-175	6	39	or	or	CCONJ
arestyrurj-175	6	40	colonic	colonic	ADJ
arestyrurj-175	6	41	epithelial	epithelial	ADJ
arestyrurj-175	6	42	cells	cell	NOUN
arestyrurj-175	6	43	.	.	PUNCT
arestyrurj-175	7	1	we	we	PRON
arestyrurj-175	7	2	also	also	ADV
arestyrurj-175	7	3	assess	assess	VERB
arestyrurj-175	7	4	chromatin	chromatin	NOUN
arestyrurj-175	7	5	accessibility	accessibility	NOUN
arestyrurj-175	7	6	in	in	ADP
arestyrurj-175	7	7	the	the	DET
arestyrurj-175	7	8	same	same	ADJ
arestyrurj-175	7	9	three	three	NUM
arestyrurj-175	7	10	cell	cell	NOUN
arestyrurj-175	7	11	types	type	NOUN
arestyrurj-175	7	12	using	use	VERB
arestyrurj-175	7	13	assay	assay	NOUN
arestyrurj-175	7	14	for	for	ADP
arestyrurj-175	7	15	transposase	transposase	NOUN
arestyrurj-175	7	16	-	-	PUNCT
arestyrurj-175	7	17	accessible	accessible	ADJ
arestyrurj-175	7	18	chromatin	chromatin	NOUN
arestyrurj-175	7	19	sequencing	sequence	VERB
arestyrurj-175	7	20	(	(	PUNCT
arestyrurj-175	7	21	atacseq	atacseq	PROPN
arestyrurj-175	7	22	)	)	PUNCT
arestyrurj-175	7	23	.	.	PUNCT
arestyrurj-175	8	1	by	by	ADP
arestyrurj-175	8	2	integrating	integrate	VERB
arestyrurj-175	8	3	the	the	DET
arestyrurj-175	8	4	vdr	vdr	NOUN
arestyrurj-175	8	5	chip	chip	NOUN
arestyrurj-175	8	6	-	-	PUNCT
arestyrurj-175	8	7	seq	seq	NOUN
arestyrurj-175	8	8	and	and	CCONJ
arestyrurj-175	8	9	atacseq	atacseq	PROPN
arestyrurj-175	8	10	data	data	PROPN
arestyrurj-175	8	11	,	,	PUNCT
arestyrurj-175	8	12	we	we	PRON
arestyrurj-175	8	13	find	find	VERB
arestyrurj-175	8	14	that	that	SCONJ
arestyrurj-175	8	15	regionally	regionally	ADV
arestyrurj-175	8	16	-	-	PUNCT
arestyrurj-175	8	17	enriched	enrich	VERB
arestyrurj-175	8	18	vdr	vdr	NOUN
arestyrurj-175	8	19	-	-	PUNCT
arestyrurj-175	8	20	responsive	responsive	ADJ
arestyrurj-175	8	21	elements	element	NOUN
arestyrurj-175	8	22	exhibit	exhibit	VERB
arestyrurj-175	8	23	greater	great	ADJ
arestyrurj-175	8	24	chromatin	chromatin	NOUN
arestyrurj-175	8	25	acces	acce	NOUN
arestyrurj-175	8	26	sibility	sibility	NOUN
arestyrurj-175	8	27	in	in	ADP
arestyrurj-175	8	28	the	the	DET
arestyrurj-175	8	29	region	region	NOUN
arestyrurj-175	8	30	of	of	ADP
arestyrurj-175	8	31	their	their	PRON
arestyrurj-175	8	32	enrichment	enrichment	NOUN
arestyrurj-175	8	33	.	.	PUNCT
arestyrurj-175	9	1	finally	finally	ADV
arestyrurj-175	9	2	,	,	PUNCT
arestyrurj-175	9	3	we	we	PRON
arestyrurj-175	9	4	assess	assess	VERB
arestyrurj-175	9	5	the	the	DET
arestyrurj-175	9	6	transcription	transcription	NOUN
arestyrurj-175	9	7	factor	factor	NOUN
arestyrurj-175	9	8	motifs	motif	NOUN
arestyrurj-175	9	9	present	present	ADJ
arestyrurj-175	9	10	in	in	ADP
arestyrurj-175	9	11	vdrresponsive	vdrresponsive	ADJ
arestyrurj-175	9	12	elements	element	NOUN
arestyrurj-175	9	13	.	.	PUNCT
arestyrurj-175	10	1	we	we	PRON
arestyrurj-175	10	2	find	find	VERB
arestyrurj-175	10	3	that	that	PRON
arestyrurj-175	10	4	duodenumand	duodenumand	VERB
arestyrurj-175	10	5	colon	colon	NOUN
arestyrurj-175	10	6	-	-	PUNCT
arestyrurj-175	10	7	enriched	enrich	VERB
arestyrurj-175	10	8	vdr	vdr	NOUN
arestyrurj-175	10	9	-	-	PUNCT
arestyrurj-175	10	10	responsive	responsive	ADJ
arestyrurj-175	10	11	elements	element	NOUN
arestyrurj-175	10	12	exhibit	exhibit	VERB
arestyrurj-175	10	13	different	different	ADJ
arestyrurj-175	10	14	sets	set	NOUN
arestyrurj-175	10	15	of	of	ADP
arestyrurj-175	10	16	transcription	transcription	NOUN
arestyrurj-175	10	17	factor	factor	NOUN
arestyrurj-175	10	18	motifs	motif	NOUN
arestyrurj-175	10	19	other	other	ADJ
arestyrurj-175	10	20	than	than	ADP
arestyrurj-175	10	21	vdr	vdr	NOUN
arestyrurj-175	10	22	,	,	PUNCT
arestyrurj-175	10	23	suggesting	suggest	VERB
arestyrurj-175	10	24	that	that	SCONJ
arestyrurj-175	10	25	vdr	vdr	NOUN
arestyrurj-175	10	26	may	may	AUX
arestyrurj-175	10	27	act	act	VERB
arestyrurj-175	10	28	together	together	ADV
arestyrurj-175	10	29	with	with	ADP
arestyrurj-175	10	30	different	different	ADJ
arestyrurj-175	10	31	partner	partner	NOUN
arestyrurj-175	10	32	transcription	transcription	NOUN
arestyrurj-175	10	33	factors	factor	NOUN
arestyrurj-175	10	34	in	in	ADP
arestyrurj-175	10	35	the	the	DET
arestyrurj-175	10	36	two	two	NUM
arestyrurj-175	10	37	regions	region	NOUN
arestyrurj-175	10	38	.	.	PUNCT
arestyrurj-175	11	1	our	our	PRON
arestyrurj-175	11	2	work	work	NOUN
arestyrurj-175	11	3	is	be	AUX
arestyrurj-175	11	4	the	the	DET
arestyrurj-175	11	5	first	first	ADJ
arestyrurj-175	11	6	investigation	investigation	NOUN
arestyrurj-175	11	7	of	of	ADP
arestyrurj-175	11	8	vdr	vdr	NOUN
arestyrurj-175	11	9	-	-	PUNCT
arestyrurj-175	11	10	dna	dna	NOUN
arestyrurj-175	11	11	binding	bind	VERB
arestyrurj-175	11	12	in	in	ADP
arestyrurj-175	11	13	the	the	DET
arestyrurj-175	11	14	colon	colon	NOUN
arestyrurj-175	11	15	and	and	CCONJ
arestyrurj-175	11	16	provides	provide	VERB
arestyrurj-175	11	17	a	a	DET
arestyrurj-175	11	18	basis	basis	NOUN
arestyrurj-175	11	19	for	for	ADP
arestyrurj-175	11	20	further	further	ADJ
arestyrurj-175	11	21	investigations	investigation	NOUN
arestyrurj-175	11	22	of	of	ADP
arestyrurj-175	11	23	vdr	vdr	NOUN
arestyrurj-175	11	24	activity	activity	NOUN
arestyrurj-175	11	25	in	in	ADP
arestyrurj-175	11	26	the	the	DET
arestyrurj-175	11	27	colon	colon	NOUN
arestyrurj-175	11	28	.	.	PUNCT
arestyrurj-175	12	1	1	1	NUM
arestyrurj-175	12	2	introduction	introduction	NOUN
arestyrurj-175	12	3	intestinal	intestinal	ADJ
arestyrurj-175	12	4	anatomy	anatomy	NOUN
arestyrurj-175	12	5	the	the	DET
arestyrurj-175	12	6	small	small	ADJ
arestyrurj-175	12	7	and	and	CCONJ
arestyrurj-175	12	8	large	large	ADJ
arestyrurj-175	12	9	intestines	intestine	NOUN
arestyrurj-175	12	10	are	be	AUX
arestyrurj-175	12	11	a	a	DET
arestyrurj-175	12	12	pair	pair	NOUN
arestyrurj-175	12	13	of	of	ADP
arestyrurj-175	12	14	digestive	digestive	ADJ
arestyrurj-175	12	15	organs	organ	NOUN
arestyrurj-175	12	16	that	that	PRON
arestyrurj-175	12	17	form	form	VERB
arestyrurj-175	12	18	the	the	DET
arestyrurj-175	12	19	lower	low	ADJ
arestyrurj-175	12	20	half	half	NOUN
arestyrurj-175	12	21	of	of	ADP
arestyrurj-175	12	22	the	the	DET
arestyrurj-175	12	23	vertebrate	vertebrate	ADJ
arestyrurj-175	12	24	gastrointestinal	gastrointestinal	ADJ
arestyrurj-175	12	25	tract	tract	NOUN
arestyrurj-175	12	26	following	follow	VERB
arestyrurj-175	12	27	the	the	DET
arestyrurj-175	12	28	stomach	stomach	NOUN
arestyrurj-175	12	29	.	.	PUNCT
arestyrurj-175	13	1	the	the	DET
arestyrurj-175	13	2	small	small	ADJ
arestyrurj-175	13	3	intestine	intestine	NOUN
arestyrurj-175	13	4	is	be	AUX
arestyrurj-175	13	5	divided	divide	VERB
arestyrurj-175	13	6	into	into	ADP
arestyrurj-175	13	7	the	the	DET
arestyrurj-175	13	8	duodenum	duodenum	NOUN
arestyrurj-175	13	9	,	,	PUNCT
arestyrurj-175	13	10	the	the	DET
arestyrurj-175	13	11	jejunum	jejunum	NOUN
arestyrurj-175	13	12	,	,	PUNCT
arestyrurj-175	13	13	and	and	CCONJ
arestyrurj-175	13	14	the	the	DET
arestyrurj-175	13	15	ileum	ileum	NOUN
arestyrurj-175	13	16	(	(	PUNCT
arestyrurj-175	13	17	figure	figure	NOUN
arestyrurj-175	13	18	1	1	NUM
arestyrurj-175	13	19	)	)	PUNCT
arestyrurj-175	13	20	.	.	PUNCT
arestyrurj-175	14	1	the	the	DET
arestyrurj-175	14	2	large	large	ADJ
arestyrurj-175	14	3	intestine	intestine	NOUN
arestyrurj-175	14	4	follows	follow	VERB
arestyrurj-175	14	5	the	the	DET
arestyrurj-175	14	6	small	small	ADJ
arestyrurj-175	14	7	intestine	intestine	NOUN
arestyrurj-175	14	8	and	and	CCONJ
arestyrurj-175	14	9	is	be	AUX
arestyrurj-175	14	10	divided	divide	VERB
arestyrurj-175	14	11	into	into	ADP
arestyrurj-175	14	12	the	the	DET
arestyrurj-175	14	13	cecum	cecum	NOUN
arestyrurj-175	14	14	,	,	PUNCT
arestyrurj-175	14	15	the	the	DET
arestyrurj-175	14	16	colon	colon	NOUN
arestyrurj-175	14	17	,	,	PUNCT
arestyrurj-175	14	18	and	and	CCONJ
arestyrurj-175	14	19	the	the	DET
arestyrurj-175	14	20	rectum	rectum	NOUN
arestyrurj-175	14	21	.	.	PUNCT
arestyrurj-175	15	1	both	both	CCONJ
arestyrurj-175	15	2	the	the	DET
arestyrurj-175	15	3	small	small	ADJ
arestyrurj-175	15	4	and	and	CCONJ
arestyrurj-175	15	5	large	large	ADJ
arestyrurj-175	15	6	intestines	intestine	NOUN
arestyrurj-175	15	7	are	be	AUX
arestyrurj-175	15	8	lined	line	VERB
arestyrurj-175	15	9	by	by	ADP
arestyrurj-175	15	10	the	the	DET
arestyrurj-175	15	11	intestinal	intestinal	ADJ
arestyrurj-175	15	12	epithelium	epithelium	NOUN
arestyrurj-175	15	13	—	—	PUNCT
arestyrurj-175	15	14	a	a	DET
arestyrurj-175	15	15	layer	layer	NOUN
arestyrurj-175	15	16	of	of	ADP
arestyrurj-175	15	17	cells	cell	NOUN
arestyrurj-175	15	18	separating	separate	VERB
arestyrurj-175	15	19	the	the	DET
arestyrurj-175	15	20	contents	content	NOUN
arestyrurj-175	15	21	of	of	ADP
arestyrurj-175	15	22	the	the	DET
arestyrurj-175	15	23	intestines	intestine	NOUN
arestyrurj-175	15	24	from	from	ADP
arestyrurj-175	15	25	the	the	DET
arestyrurj-175	15	26	rest	rest	NOUN
arestyrurj-175	15	27	of	of	ADP
arestyrurj-175	15	28	the	the	DET
arestyrurj-175	15	29	body	body	NOUN
arestyrurj-175	15	30	.	.	PUNCT
arestyrurj-175	16	1	in	in	ADP
arestyrurj-175	16	2	the	the	DET
arestyrurj-175	16	3	small	small	ADJ
arestyrurj-175	16	4	intestine	intestine	NOUN
arestyrurj-175	16	5	,	,	PUNCT
arestyrurj-175	16	6	the	the	DET
arestyrurj-175	16	7	intestinal	intestinal	ADJ
arestyrurj-175	16	8	epithelium	epithelium	NOUN
arestyrurj-175	16	9	is	be	AUX
arestyrurj-175	16	10	a	a	DET
arestyrurj-175	16	11	tightly	tightly	ADV
arestyrurj-175	16	12	folded	fold	VERB
arestyrurj-175	16	13	structure	structure	NOUN
arestyrurj-175	16	14	consisting	consist	VERB
arestyrurj-175	16	15	of	of	ADP
arestyrurj-175	16	16	villi	villi	NOUN
arestyrurj-175	16	17	—	—	PUNCT
arestyrurj-175	16	18	finger	finger	NOUN
arestyrurj-175	16	19	-	-	PUNCT
arestyrurj-175	16	20	like	like	ADJ
arestyrurj-175	16	21	protrusions	protrusion	NOUN
arestyrurj-175	16	22	,	,	PUNCT
arestyrurj-175	16	23	and	and	CCONJ
arestyrurj-175	16	24	crypts	crypt	NOUN
arestyrurj-175	16	25	—	—	PUNCT
arestyrurj-175	16	26	thin	thin	ADJ
arestyrurj-175	16	27	invaginations	invagination	NOUN
arestyrurj-175	16	28	between	between	ADP
arestyrurj-175	16	29	villi.[6	villi.[6	NOUN
arestyrurj-175	16	30	]	]	X
arestyrurj-175	16	31	the	the	DET
arestyrurj-175	16	32	folded	fold	VERB
arestyrurj-175	16	33	structure	structure	NOUN
arestyrurj-175	16	34	of	of	ADP
arestyrurj-175	16	35	the	the	DET
arestyrurj-175	16	36	intestinal	intestinal	ADJ
arestyrurj-175	16	37	epithelium	epithelium	NOUN
arestyrurj-175	16	38	increases	increase	VERB
arestyrurj-175	16	39	the	the	DET
arestyrurj-175	16	40	surface	surface	NOUN
arestyrurj-175	16	41	area	area	NOUN
arestyrurj-175	16	42	available	available	ADJ
arestyrurj-175	16	43	for	for	ADP
arestyrurj-175	16	44	nutrient	nutrient	NOUN
arestyrurj-175	16	45	absorption	absorption	NOUN
arestyrurj-175	16	46	in	in	ADP
arestyrurj-175	16	47	the	the	DET
arestyrurj-175	16	48	small	small	ADJ
arestyrurj-175	16	49	intestine	intestine	NOUN
arestyrurj-175	16	50	.	.	PUNCT
arestyrurj-175	17	1	villi	villi	NOUN
arestyrurj-175	17	2	are	be	AUX
arestyrurj-175	17	3	composed	compose	VERB
arestyrurj-175	17	4	of	of	ADP
arestyrurj-175	17	5	differentiated	differentiated	ADJ
arestyrurj-175	17	6	epithelial	epithelial	ADJ
arestyrurj-175	17	7	cells	cell	NOUN
arestyrurj-175	17	8	,	,	PUNCT
arestyrurj-175	17	9	and	and	CCONJ
arestyrurj-175	17	10	crypts	crypt	NOUN
arestyrurj-175	17	11	are	be	AUX
arestyrurj-175	17	12	composed	compose	VERB
arestyrurj-175	17	13	of	of	ADP
arestyrurj-175	17	14	undifferentiated	undifferentiated	ADJ
arestyrurj-175	17	15	intestinal	intestinal	ADJ
arestyrurj-175	17	16	stem	stem	NOUN
arestyrurj-175	17	17	cells	cell	NOUN
arestyrurj-175	17	18	.	.	PUNCT
arestyrurj-175	18	1	intestinal	intestinal	ADJ
arestyrurj-175	18	2	stem	stem	NOUN
arestyrurj-175	18	3	cells	cell	NOUN
arestyrurj-175	18	4	in	in	ADP
arestyrurj-175	18	5	the	the	DET
arestyrurj-175	18	6	crypts	crypt	NOUN
arestyrurj-175	18	7	differentiate	differentiate	VERB
arestyrurj-175	18	8	and	and	CCONJ
arestyrurj-175	18	9	migrate	migrate	VERB
arestyrurj-175	18	10	to	to	ADP
arestyrurj-175	18	11	the	the	DET
arestyrurj-175	18	12	villi	villi	NOUN
arestyrurj-175	18	13	,	,	PUNCT
arestyrurj-175	18	14	maintaining	maintain	VERB
arestyrurj-175	18	15	the	the	DET
arestyrurj-175	18	16	intestinal	intestinal	ADJ
arestyrurj-175	18	17	epithelium	epithelium	NOUN
arestyrurj-175	18	18	even	even	ADV
arestyrurj-175	18	19	as	as	SCONJ
arestyrurj-175	18	20	epithelial	epithelial	ADJ
arestyrurj-175	18	21	cells	cell	NOUN
arestyrurj-175	18	22	are	be	AUX
arestyrurj-175	18	23	constantly	constantly	ADV
arestyrurj-175	18	24	shed	shed	VERB
arestyrurj-175	18	25	from	from	ADP
arestyrurj-175	18	26	the	the	DET
arestyrurj-175	18	27	villi.[5	villi.[5	NOUN
arestyrurj-175	18	28	]	]	PUNCT
arestyrurj-175	18	29	villi	villi	NOUN
arestyrurj-175	18	30	are	be	AUX
arestyrurj-175	18	31	not	not	PART
arestyrurj-175	18	32	present	present	ADJ
arestyrurj-175	18	33	in	in	ADP
arestyrurj-175	18	34	the	the	DET
arestyrurj-175	18	35	colon	colon	NOUN
arestyrurj-175	18	36	;	;	PUNCT
arestyrurj-175	18	37	instead	instead	ADV
arestyrurj-175	18	38	,	,	PUNCT
arestyrurj-175	18	39	the	the	DET
arestyrurj-175	18	40	colonic	colonic	NOUN
arestyrurj-175	18	41	epithelium	epithelium	NOUN
arestyrurj-175	18	42	is	be	AUX
arestyrurj-175	18	43	a	a	DET
arestyrurj-175	18	44	heterogeneous	heterogeneous	ADJ
arestyrurj-175	18	45	mixture	mixture	NOUN
arestyrurj-175	18	46	of	of	ADP
arestyrurj-175	18	47	differentiated	differentiated	ADJ
arestyrurj-175	18	48	epithelial	epithelial	ADJ
arestyrurj-175	18	49	cells	cell	NOUN
arestyrurj-175	18	50	and	and	CCONJ
arestyrurj-175	18	51	undifferentiated	undifferentiated	ADJ
arestyrurj-175	18	52	stem	stem	NOUN
arestyrurj-175	18	53	cells.[6	cells.[6	NOUN
arestyrurj-175	18	54	]	]	PUNCT
arestyrurj-175	18	55	vitamin	vitamin	NOUN
arestyrurj-175	18	56	d	d	NOUN
arestyrurj-175	18	57	receptor	receptor	NOUN
arestyrurj-175	18	58	vitamin	vitamin	NOUN
arestyrurj-175	18	59	d	d	NOUN
arestyrurj-175	18	60	receptor	receptor	NOUN
arestyrurj-175	18	61	(	(	PUNCT
arestyrurj-175	18	62	vdr	vdr	NOUN
arestyrurj-175	18	63	)	)	PUNCT
arestyrurj-175	18	64	is	be	AUX
arestyrurj-175	18	65	a	a	DET
arestyrurj-175	18	66	transcription	transcription	NOUN
arestyrurj-175	18	67	factor	factor	NOUN
arestyrurj-175	18	68	present	present	ADJ
arestyrurj-175	18	69	in	in	ADP
arestyrurj-175	18	70	intestinal	intestinal	ADJ
arestyrurj-175	18	71	epithelial	epithelial	ADJ
arestyrurj-175	18	72	cells	cell	NOUN
arestyrurj-175	18	73	.	.	PUNCT
arestyrurj-175	19	1	transcription	transcription	NOUN
arestyrurj-175	19	2	factors	factor	NOUN
arestyrurj-175	19	3	are	be	AUX
arestyrurj-175	19	4	proteins	protein	NOUN
arestyrurj-175	19	5	that	that	PRON
arestyrurj-175	19	6	regulate	regulate	VERB
arestyrurj-175	19	7	the	the	DET
arestyrurj-175	19	8	transcription	transcription	NOUN
arestyrurj-175	19	9	of	of	ADP
arestyrurj-175	19	10	genes	gene	NOUN
arestyrurj-175	19	11	from	from	ADP
arestyrurj-175	19	12	dna	dna	PROPN
arestyrurj-175	19	13	to	to	ADP
arestyrurj-175	19	14	rna	rna	PROPN
arestyrurj-175	19	15	.	.	PUNCT
arestyrurj-175	20	1	transcription	transcription	NOUN
arestyrurj-175	20	2	factors	factor	NOUN
arestyrurj-175	20	3	bind	bind	VERB
arestyrurj-175	20	4	to	to	ADP
arestyrurj-175	20	5	particular	particular	ADJ
arestyrurj-175	20	6	genomic	genomic	NOUN
arestyrurj-175	20	7	regions	region	NOUN
arestyrurj-175	20	8	near	near	ADP
arestyrurj-175	20	9	their	their	PRON
arestyrurj-175	20	10	target	target	NOUN
arestyrurj-175	20	11	genes	gene	NOUN
arestyrurj-175	20	12	,	,	PUNCT
arestyrurj-175	20	13	inducing	induce	VERB
arestyrurj-175	20	14	conformational	conformational	ADJ
arestyrurj-175	20	15	changes	change	NOUN
arestyrurj-175	20	16	in	in	ADP
arestyrurj-175	20	17	the	the	DET
arestyrurj-175	20	18	dna	dna	PROPN
arestyrurj-175	20	19	aresty	aresty	PROPN
arestyrurj-175	20	20	rutgers	rutgers	PROPN
arestyrurj-175	20	21	undergraduate	undergraduate	PROPN
arestyrurj-175	20	22	research	research	PROPN
arestyrurj-175	20	23	journal	journal	PROPN
arestyrurj-175	20	24	,	,	PUNCT
arestyrurj-175	20	25	volume	volume	NOUN
arestyrurj-175	20	26	i	i	PRON
arestyrurj-175	20	27	,	,	PUNCT
arestyrurj-175	20	28	issue	issue	VERB
arestyrurj-175	20	29	iii	iii	NUM
arestyrurj-175	20	30	that	that	SCONJ
arestyrurj-175	20	31	either	either	CCONJ
arestyrurj-175	20	32	promote	promote	VERB
arestyrurj-175	20	33	or	or	CCONJ
arestyrurj-175	20	34	inhibit	inhibit	VERB
arestyrurj-175	20	35	transcription	transcription	NOUN
arestyrurj-175	20	36	of	of	ADP
arestyrurj-175	20	37	the	the	DET
arestyrurj-175	20	38	target	target	NOUN
arestyrurj-175	20	39	genes	gene	NOUN
arestyrurj-175	20	40	.	.	PUNCT
arestyrurj-175	21	1	most	most	ADJ
arestyrurj-175	21	2	transcription	transcription	NOUN
arestyrurj-175	21	3	factors	factor	NOUN
arestyrurj-175	21	4	can	can	AUX
arestyrurj-175	21	5	only	only	ADV
arestyrurj-175	21	6	bind	bind	VERB
arestyrurj-175	21	7	to	to	ADP
arestyrurj-175	21	8	genomic	genomic	ADJ
arestyrurj-175	21	9	regions	region	NOUN
arestyrurj-175	21	10	located	locate	VERB
arestyrurj-175	21	11	in	in	ADP
arestyrurj-175	21	12	open	open	ADJ
arestyrurj-175	21	13	chromatin	chromatin	NOUN
arestyrurj-175	21	14	—	—	PUNCT
arestyrurj-175	21	15	dna	dna	NOUN
arestyrurj-175	21	16	that	that	PRON
arestyrurj-175	21	17	is	be	AUX
arestyrurj-175	21	18	not	not	PART
arestyrurj-175	21	19	condensed	condense	VERB
arestyrurj-175	21	20	by	by	ADP
arestyrurj-175	21	21	histone	histone	NOUN
arestyrurj-175	21	22	proteins	protein	NOUN
arestyrurj-175	21	23	.	.	PUNCT
arestyrurj-175	22	1	a	a	DET
arestyrurj-175	22	2	transcription	transcription	NOUN
arestyrurj-175	22	3	factor	factor	NOUN
arestyrurj-175	22	4	’s	’s	PART
arestyrurj-175	22	5	responsive	responsive	ADJ
arestyrurj-175	22	6	elements	element	NOUN
arestyrurj-175	22	7	are	be	AUX
arestyrurj-175	22	8	the	the	DET
arestyrurj-175	22	9	open	open	ADJ
arestyrurj-175	22	10	genomic	genomic	ADJ
arestyrurj-175	22	11	regions	region	NOUN
arestyrurj-175	22	12	to	to	PART
arestyrurj-175	22	13	which	which	PRON
arestyrurj-175	22	14	the	the	DET
arestyrurj-175	22	15	transcription	transcription	NOUN
arestyrurj-175	22	16	factor	factor	NOUN
arestyrurj-175	22	17	binds	bind	VERB
arestyrurj-175	22	18	.	.	PUNCT
arestyrurj-175	23	1	a	a	DET
arestyrurj-175	23	2	transcription	transcription	NOUN
arestyrurj-175	23	3	factor	factor	NOUN
arestyrurj-175	23	4	’s	’s	PART
arestyrurj-175	23	5	binding	bind	VERB
arestyrurj-175	23	6	specificity	specificity	NOUN
arestyrurj-175	23	7	results	result	NOUN
arestyrurj-175	23	8	from	from	ADP
arestyrurj-175	23	9	the	the	DET
arestyrurj-175	23	10	presence	presence	NOUN
arestyrurj-175	23	11	of	of	ADP
arestyrurj-175	23	12	particular	particular	ADJ
arestyrurj-175	23	13	nucleotide	nucleotide	ADJ
arestyrurj-175	23	14	sequences	sequence	NOUN
arestyrurj-175	23	15	,	,	PUNCT
arestyrurj-175	23	16	called	call	VERB
arestyrurj-175	23	17	transcription	transcription	NOUN
arestyrurj-175	23	18	factor	factor	NOUN
arestyrurj-175	23	19	motifs	motif	NOUN
arestyrurj-175	23	20	,	,	PUNCT
arestyrurj-175	23	21	in	in	ADP
arestyrurj-175	23	22	the	the	DET
arestyrurj-175	23	23	transcription	transcription	NOUN
arestyrurj-175	23	24	factor	factor	NOUN
arestyrurj-175	23	25	’s	’s	PART
arestyrurj-175	23	26	responsive	responsive	ADJ
arestyrurj-175	23	27	elements	element	NOUN
arestyrurj-175	23	28	.	.	PUNCT
arestyrurj-175	24	1	vdr	vdr	NOUN
arestyrurj-175	24	2	binds	bind	VERB
arestyrurj-175	24	3	calcitriol	calcitriol	NOUN
arestyrurj-175	24	4	(	(	PUNCT
arestyrurj-175	24	5	1,25	1,25	NUM
arestyrurj-175	24	6	-	-	PUNCT
arestyrurj-175	24	7	dihydroxyvitamin	dihydroxyvitamin	ADJ
arestyrurj-175	24	8	d3	d3	PROPN
arestyrurj-175	24	9	)	)	PUNCT
arestyrurj-175	24	10	,	,	PUNCT
arestyrurj-175	24	11	which	which	PRON
arestyrurj-175	24	12	is	be	AUX
arestyrurj-175	24	13	the	the	DET
arestyrurj-175	24	14	activated	activate	VERB
arestyrurj-175	24	15	form	form	NOUN
arestyrurj-175	24	16	of	of	ADP
arestyrurj-175	24	17	vitamin	vitamin	NOUN
arestyrurj-175	24	18	d.	d.	PROPN
arestyrurj-175	24	19	vitamin	vitamin	PROPN
arestyrurj-175	24	20	d	d	PROPN
arestyrurj-175	24	21	,	,	PUNCT
arestyrurj-175	24	22	whether	whether	SCONJ
arestyrurj-175	24	23	synthesized	synthesize	VERB
arestyrurj-175	24	24	by	by	ADP
arestyrurj-175	24	25	skin	skin	NOUN
arestyrurj-175	24	26	cells	cell	NOUN
arestyrurj-175	24	27	as	as	ADP
arestyrurj-175	24	28	vitamin	vitamin	NOUN
arestyrurj-175	24	29	d3	d3	PROPN
arestyrurj-175	24	30	or	or	CCONJ
arestyrurj-175	24	31	obtained	obtain	VERB
arestyrurj-175	24	32	from	from	ADP
arestyrurj-175	24	33	the	the	DET
arestyrurj-175	24	34	diet	diet	NOUN
arestyrurj-175	24	35	as	as	ADP
arestyrurj-175	24	36	vitamin	vitamin	NOUN
arestyrurj-175	24	37	d2	d2	PROPN
arestyrurj-175	24	38	,	,	PUNCT
arestyrurj-175	24	39	is	be	AUX
arestyrurj-175	24	40	inactive	inactive	ADJ
arestyrurj-175	24	41	and	and	CCONJ
arestyrurj-175	24	42	must	must	AUX
arestyrurj-175	24	43	be	be	AUX
arestyrurj-175	24	44	metabolized	metabolize	VERB
arestyrurj-175	24	45	in	in	ADP
arestyrurj-175	24	46	the	the	DET
arestyrurj-175	24	47	kidneys	kidney	NOUN
arestyrurj-175	24	48	to	to	PART
arestyrurj-175	24	49	calcitriol	calcitriol	VERB
arestyrurj-175	24	50	before	before	ADP
arestyrurj-175	24	51	binding	bind	VERB
arestyrurj-175	24	52	with	with	ADP
arestyrurj-175	24	53	vdr	vdr	NOUN
arestyrurj-175	24	54	.	.	PUNCT
arestyrurj-175	25	1	from	from	ADP
arestyrurj-175	25	2	the	the	DET
arestyrurj-175	25	3	kidneys	kidney	NOUN
arestyrurj-175	25	4	,	,	PUNCT
arestyrurj-175	25	5	calcitriol	calcitriol	NOUN
arestyrurj-175	25	6	enters	enter	VERB
arestyrurj-175	25	7	the	the	DET
arestyrurj-175	25	8	bloodstream	bloodstream	NOUN
arestyrurj-175	25	9	and	and	CCONJ
arestyrurj-175	25	10	ultimately	ultimately	ADV
arestyrurj-175	25	11	ligates	ligate	VERB
arestyrurj-175	25	12	with	with	ADP
arestyrurj-175	25	13	and	and	CCONJ
arestyrurj-175	25	14	activates	activate	VERB
arestyrurj-175	25	15	vdr	vdr	NOUN
arestyrurj-175	25	16	in	in	ADP
arestyrurj-175	25	17	intestinal	intestinal	ADJ
arestyrurj-175	25	18	epithelial	epithelial	ADJ
arestyrurj-175	25	19	cells	cell	NOUN
arestyrurj-175	25	20	.	.	PUNCT
arestyrurj-175	26	1	once	once	ADV
arestyrurj-175	26	2	activated	activate	VERB
arestyrurj-175	26	3	by	by	ADP
arestyrurj-175	26	4	calcitriol	calcitriol	NOUN
arestyrurj-175	26	5	,	,	PUNCT
arestyrurj-175	26	6	vdr	vdr	NOUN
arestyrurj-175	26	7	induces	induce	VERB
arestyrurj-175	26	8	the	the	DET
arestyrurj-175	26	9	transcription	transcription	NOUN
arestyrurj-175	26	10	of	of	ADP
arestyrurj-175	26	11	genes	gene	NOUN
arestyrurj-175	26	12	required	require	VERB
arestyrurj-175	26	13	for	for	ADP
arestyrurj-175	26	14	calcium	calcium	NOUN
arestyrurj-175	26	15	absorption	absorption	NOUN
arestyrurj-175	26	16	by	by	ADP
arestyrurj-175	26	17	the	the	DET
arestyrurj-175	26	18	intestinal	intestinal	ADJ
arestyrurj-175	26	19	epithelial	epithelial	ADJ
arestyrurj-175	26	20	cells	cell	NOUN
arestyrurj-175	26	21	.	.	PUNCT
arestyrurj-175	27	1	vdr	vdr	VERB
arestyrurj-175	27	2	dysfunction	dysfunction	NOUN
arestyrurj-175	27	3	is	be	AUX
arestyrurj-175	27	4	implicated	implicate	VERB
arestyrurj-175	27	5	in	in	ADP
arestyrurj-175	27	6	inflammatory	inflammatory	ADJ
arestyrurj-175	27	7	bowel	bowel	NOUN
arestyrurj-175	27	8	disease	disease	NOUN
arestyrurj-175	27	9	(	(	PUNCT
arestyrurj-175	27	10	ibd	ibd	PROPN
arestyrurj-175	27	11	)	)	PUNCT
arestyrurj-175	27	12	and	and	CCONJ
arestyrurj-175	27	13	colorectal	colorectal	ADJ
arestyrurj-175	27	14	cancer	cancer	NOUN
arestyrurj-175	27	15	(	(	PUNCT
arestyrurj-175	27	16	crc	crc	NOUN
arestyrurj-175	27	17	)	)	PUNCT
arestyrurj-175	27	18	.	.	PUNCT
arestyrurj-175	28	1	certain	certain	ADJ
arestyrurj-175	28	2	atypical	atypical	ADJ
arestyrurj-175	28	3	variants	variant	NOUN
arestyrurj-175	28	4	of	of	ADP
arestyrurj-175	28	5	the	the	DET
arestyrurj-175	28	6	vdr	vdr	NOUN
arestyrurj-175	28	7	gene	gene	NOUN
arestyrurj-175	28	8	are	be	AUX
arestyrurj-175	28	9	associated	associate	VERB
arestyrurj-175	28	10	with	with	ADP
arestyrurj-175	28	11	increased	increase	VERB
arestyrurj-175	28	12	prevalence	prevalence	NOUN
arestyrurj-175	28	13	of	of	ADP
arestyrurj-175	28	14	ibd.[8	ibd.[8	PROPN
arestyrurj-175	28	15	]	]	PUNCT
arestyrurj-175	28	16	ibd	ibd	NOUN
arestyrurj-175	28	17	patients	patient	NOUN
arestyrurj-175	28	18	also	also	ADV
arestyrurj-175	28	19	exhibit	exhibit	VERB
arestyrurj-175	28	20	reduced	reduced	ADJ
arestyrurj-175	28	21	levels	level	NOUN
arestyrurj-175	28	22	of	of	ADP
arestyrurj-175	28	23	vdr	vdr	NOUN
arestyrurj-175	28	24	in	in	ADP
arestyrurj-175	28	25	the	the	DET
arestyrurj-175	28	26	intestinal	intestinal	ADJ
arestyrurj-175	28	27	epithelium	epithelium	NOUN
arestyrurj-175	28	28	.	.	PUNCT
arestyrurj-175	29	1	these	these	DET
arestyrurj-175	29	2	findings	finding	NOUN
arestyrurj-175	29	3	suggest	suggest	VERB
arestyrurj-175	29	4	a	a	DET
arestyrurj-175	29	5	link	link	NOUN
arestyrurj-175	29	6	between	between	ADP
arestyrurj-175	29	7	vdr	vdr	NOUN
arestyrurj-175	29	8	dysfunction	dysfunction	NOUN
arestyrurj-175	29	9	and	and	CCONJ
arestyrurj-175	29	10	ibd	ibd	NOUN
arestyrurj-175	29	11	.	.	PUNCT
arestyrurj-175	30	1	clinical	clinical	ADJ
arestyrurj-175	30	2	studies	study	NOUN
arestyrurj-175	30	3	of	of	ADP
arestyrurj-175	30	4	crc	crc	NOUN
arestyrurj-175	30	5	patients	patient	NOUN
arestyrurj-175	30	6	have	have	AUX
arestyrurj-175	30	7	shown	show	VERB
arestyrurj-175	30	8	that	that	SCONJ
arestyrurj-175	30	9	different	different	ADJ
arestyrurj-175	30	10	variants	variant	NOUN
arestyrurj-175	30	11	of	of	ADP
arestyrurj-175	30	12	vdr	vdr	NOUN
arestyrurj-175	30	13	correlate	correlate	VERB
arestyrurj-175	30	14	with	with	ADP
arestyrurj-175	30	15	differences	difference	NOUN
arestyrurj-175	30	16	in	in	ADP
arestyrurj-175	30	17	patient	patient	ADJ
arestyrurj-175	30	18	survival.[21	survival.[21	PROPN
arestyrurj-175	30	19	]	]	PUNCT
arestyrurj-175	30	20	metastatic	metastatic	ADJ
arestyrurj-175	30	21	crc	crc	NOUN
arestyrurj-175	30	22	tumor	tumor	NOUN
arestyrurj-175	30	23	cells	cell	NOUN
arestyrurj-175	30	24	exhibit	exhibit	VERB
arestyrurj-175	30	25	reduced	reduce	VERB
arestyrurj-175	30	26	vdr	vdr	NOUN
arestyrurj-175	30	27	expression	expression	NOUN
arestyrurj-175	30	28	compared	compare	VERB
arestyrurj-175	30	29	to	to	ADP
arestyrurj-175	30	30	typical	typical	ADJ
arestyrurj-175	30	31	intestinal	intestinal	ADJ
arestyrurj-175	30	32	cells.[16	cells.[16	NOUN
arestyrurj-175	30	33	]	]	PUNCT
arestyrurj-175	30	34	reduced	reduced	ADJ
arestyrurj-175	30	35	levels	level	NOUN
arestyrurj-175	30	36	of	of	ADP
arestyrurj-175	30	37	vdr	vdr	NOUN
arestyrurj-175	30	38	expression	expression	NOUN
arestyrurj-175	30	39	enhance	enhance	VERB
arestyrurj-175	30	40	the	the	DET
arestyrurj-175	30	41	abnormal	abnormal	ADJ
arestyrurj-175	30	42	wnt	wnt	NOUN
arestyrurj-175	30	43	/	/	SYM
arestyrurj-175	30	44	β	β	NOUN
arestyrurj-175	30	45	-	-	ADJ
arestyrurj-175	30	46	catenin	catenin	ADJ
arestyrurj-175	30	47	pathway	pathway	NOUN
arestyrurj-175	30	48	that	that	PRON
arestyrurj-175	30	49	drives	drive	VERB
arestyrurj-175	30	50	the	the	DET
arestyrurj-175	30	51	growth	growth	NOUN
arestyrurj-175	30	52	of	of	ADP
arestyrurj-175	30	53	most	most	ADJ
arestyrurj-175	30	54	crc	crc	NOUN
arestyrurj-175	30	55	tumors.[11	tumors.[11	PROPN
arestyrurj-175	30	56	]	]	PUNCT
arestyrurj-175	30	57	although	although	SCONJ
arestyrurj-175	30	58	the	the	DET
arestyrurj-175	30	59	precise	precise	ADJ
arestyrurj-175	30	60	role	role	NOUN
arestyrurj-175	30	61	of	of	ADP
arestyrurj-175	30	62	vdr	vdr	NOUN
arestyrurj-175	30	63	deficiency	deficiency	NOUN
arestyrurj-175	30	64	in	in	ADP
arestyrurj-175	30	65	crc	crc	NOUN
arestyrurj-175	30	66	tumor	tumor	NOUN
arestyrurj-175	30	67	formation	formation	NOUN
arestyrurj-175	30	68	is	be	AUX
arestyrurj-175	30	69	still	still	ADV
arestyrurj-175	30	70	unknown	unknown	ADJ
arestyrurj-175	30	71	,	,	PUNCT
arestyrurj-175	30	72	these	these	DET
arestyrurj-175	30	73	findings	finding	NOUN
arestyrurj-175	30	74	suggest	suggest	VERB
arestyrurj-175	30	75	that	that	SCONJ
arestyrurj-175	30	76	vdr	vdr	NOUN
arestyrurj-175	30	77	inhibition	inhibition	NOUN
arestyrurj-175	30	78	drives	drive	VERB
arestyrurj-175	30	79	the	the	DET
arestyrurj-175	30	80	metastasis	metastasis	NOUN
arestyrurj-175	30	81	of	of	ADP
arestyrurj-175	30	82	crc	crc	NOUN
arestyrurj-175	30	83	tumors	tumor	NOUN
arestyrurj-175	30	84	.	.	PUNCT
arestyrurj-175	31	1	one	one	NUM
arestyrurj-175	31	2	of	of	ADP
arestyrurj-175	31	3	the	the	DET
arestyrurj-175	31	4	best	good	ADJ
arestyrurj-175	31	5	appreciated	appreciated	ADJ
arestyrurj-175	31	6	roles	role	NOUN
arestyrurj-175	31	7	of	of	ADP
arestyrurj-175	31	8	vdr	vdr	NOUN
arestyrurj-175	31	9	is	be	AUX
arestyrurj-175	31	10	its	its	PRON
arestyrurj-175	31	11	mediation	mediation	NOUN
arestyrurj-175	31	12	of	of	ADP
arestyrurj-175	31	13	calcium	calcium	NOUN
arestyrurj-175	31	14	absorption	absorption	NOUN
arestyrurj-175	31	15	in	in	ADP
arestyrurj-175	31	16	the	the	DET
arestyrurj-175	31	17	small	small	ADJ
arestyrurj-175	31	18	intestine	intestine	NOUN
arestyrurj-175	31	19	.	.	PUNCT
arestyrurj-175	32	1	knockout	knockout	NOUN
arestyrurj-175	32	2	studies	study	NOUN
arestyrurj-175	32	3	investigate	investigate	VERB
arestyrurj-175	32	4	the	the	DET
arestyrurj-175	32	5	function	function	NOUN
arestyrurj-175	32	6	of	of	ADP
arestyrurj-175	32	7	a	a	DET
arestyrurj-175	32	8	protein	protein	NOUN
arestyrurj-175	32	9	by	by	ADP
arestyrurj-175	32	10	inactivating	inactivate	VERB
arestyrurj-175	32	11	the	the	DET
arestyrurj-175	32	12	gene	gene	NOUN
arestyrurj-175	32	13	encoding	encode	VERB
arestyrurj-175	32	14	the	the	DET
arestyrurj-175	32	15	protein	protein	NOUN
arestyrurj-175	32	16	and	and	CCONJ
arestyrurj-175	32	17	observing	observe	VERB
arestyrurj-175	32	18	the	the	DET
arestyrurj-175	32	19	effect	effect	NOUN
arestyrurj-175	32	20	.	.	PUNCT
arestyrurj-175	33	1	when	when	SCONJ
arestyrurj-175	33	2	vdr	vdr	NOUN
arestyrurj-175	33	3	is	be	AUX
arestyrurj-175	33	4	knocked	knock	VERB
arestyrurj-175	33	5	out	out	ADP
arestyrurj-175	33	6	in	in	ADP
arestyrurj-175	33	7	both	both	CCONJ
arestyrurj-175	33	8	the	the	DET
arestyrurj-175	33	9	small	small	ADJ
arestyrurj-175	33	10	and	and	CCONJ
arestyrurj-175	33	11	large	large	ADJ
arestyrurj-175	33	12	intestines	intestine	NOUN
arestyrurj-175	33	13	,	,	PUNCT
arestyrurj-175	33	14	the	the	DET
arestyrurj-175	33	15	vdrknockout	vdrknockout	NOUN
arestyrurj-175	33	16	mice	mouse	NOUN
arestyrurj-175	33	17	develop	develop	VERB
arestyrurj-175	33	18	calcium	calcium	NOUN
arestyrurj-175	33	19	deficiencies	deficiency	NOUN
arestyrurj-175	33	20	and	and	CCONJ
arestyrurj-175	33	21	ultimately	ultimately	ADV
arestyrurj-175	33	22	rickets	ricket	VERB
arestyrurj-175	33	23	,	,	PUNCT
arestyrurj-175	33	24	a	a	DET
arestyrurj-175	33	25	disease	disease	NOUN
arestyrurj-175	33	26	characterized	characterize	VERB
arestyrurj-175	33	27	by	by	ADP
arestyrurj-175	33	28	severe	severe	ADJ
arestyrurj-175	33	29	reduction	reduction	NOUN
arestyrurj-175	33	30	in	in	ADP
arestyrurj-175	33	31	bone	bone	NOUN
arestyrurj-175	33	32	density.[20	density.[20	NOUN
arestyrurj-175	33	33	]	]	PUNCT
arestyrurj-175	33	34	however	however	ADV
arestyrurj-175	33	35	,	,	PUNCT
arestyrurj-175	33	36	when	when	SCONJ
arestyrurj-175	33	37	vdr	vdr	NOUN
arestyrurj-175	33	38	is	be	AUX
arestyrurj-175	33	39	knocked	knock	VERB
arestyrurj-175	33	40	out	out	ADP
arestyrurj-175	33	41	in	in	ADP
arestyrurj-175	33	42	the	the	DET
arestyrurj-175	33	43	small	small	ADJ
arestyrurj-175	33	44	intestine	intestine	NOUN
arestyrurj-175	33	45	but	but	CCONJ
arestyrurj-175	33	46	not	not	PART
arestyrurj-175	33	47	in	in	ADP
arestyrurj-175	33	48	the	the	DET
arestyrurj-175	33	49	colon	colon	NOUN
arestyrurj-175	33	50	,	,	PUNCT
arestyrurj-175	33	51	the	the	DET
arestyrurj-175	33	52	mice	mouse	NOUN
arestyrurj-175	33	53	are	be	AUX
arestyrurj-175	33	54	still	still	ADV
arestyrurj-175	33	55	able	able	ADJ
arestyrurj-175	33	56	to	to	PART
arestyrurj-175	33	57	absorb	absorb	VERB
arestyrurj-175	33	58	enough	enough	ADJ
arestyrurj-175	33	59	calcium	calcium	NOUN
arestyrurj-175	33	60	to	to	PART
arestyrurj-175	33	61	avoid	avoid	VERB
arestyrurj-175	33	62	developing	develop	VERB
arestyrurj-175	33	63	rickets.[7	rickets.[7	NOUN
arestyrurj-175	33	64	]	]	PUNCT
arestyrurj-175	33	65	though	though	SCONJ
arestyrurj-175	33	66	these	these	DET
arestyrurj-175	33	67	studies	study	NOUN
arestyrurj-175	33	68	show	show	VERB
arestyrurj-175	33	69	that	that	SCONJ
arestyrurj-175	33	70	vdr	vdr	NOUN
arestyrurj-175	33	71	is	be	AUX
arestyrurj-175	33	72	active	active	ADJ
arestyrurj-175	33	73	in	in	ADP
arestyrurj-175	33	74	the	the	DET
arestyrurj-175	33	75	colon	colon	NOUN
arestyrurj-175	33	76	,	,	PUNCT
arestyrurj-175	33	77	the	the	DET
arestyrurj-175	33	78	differences	difference	NOUN
arestyrurj-175	33	79	in	in	ADP
arestyrurj-175	33	80	vdr	vdr	NOUN
arestyrurj-175	33	81	-	-	PUNCT
arestyrurj-175	33	82	dna	dna	NOUN
arestyrurj-175	33	83	binding	bind	VERB
arestyrurj-175	33	84	between	between	ADP
arestyrurj-175	33	85	the	the	DET
arestyrurj-175	33	86	duodenum	duodenum	NOUN
arestyrurj-175	33	87	and	and	CCONJ
arestyrurj-175	33	88	colon	colon	NOUN
arestyrurj-175	33	89	have	have	AUX
arestyrurj-175	33	90	not	not	PART
arestyrurj-175	33	91	yet	yet	ADV
arestyrurj-175	33	92	been	be	AUX
arestyrurj-175	33	93	investigated	investigate	VERB
arestyrurj-175	33	94	.	.	PUNCT
arestyrurj-175	34	1	research	research	NOUN
arestyrurj-175	34	2	objectives	objective	NOUN
arestyrurj-175	34	3	here	here	ADV
arestyrurj-175	34	4	,	,	PUNCT
arestyrurj-175	34	5	we	we	PRON
arestyrurj-175	34	6	investigate	investigate	VERB
arestyrurj-175	34	7	vdr	vdr	NOUN
arestyrurj-175	34	8	-	-	PUNCT
arestyrurj-175	34	9	dna	dna	NOUN
arestyrurj-175	34	10	binding	bind	VERB
arestyrurj-175	34	11	in	in	ADP
arestyrurj-175	34	12	the	the	DET
arestyrurj-175	34	13	duodenum	duodenum	NOUN
arestyrurj-175	34	14	and	and	CCONJ
arestyrurj-175	34	15	colon	colon	NOUN
arestyrurj-175	34	16	using	use	VERB
arestyrurj-175	34	17	laboratory	laboratory	NOUN
arestyrurj-175	34	18	mice	mouse	NOUN
arestyrurj-175	34	19	(	(	PUNCT
arestyrurj-175	34	20	mus	mus	PROPN
arestyrurj-175	34	21	musculus	musculus	PROPN
arestyrurj-175	34	22	)	)	PUNCT
arestyrurj-175	34	23	as	as	ADP
arestyrurj-175	34	24	model	model	NOUN
arestyrurj-175	34	25	organisms	organism	NOUN
arestyrurj-175	34	26	.	.	PUNCT
arestyrurj-175	35	1	mice	mouse	NOUN
arestyrurj-175	35	2	and	and	CCONJ
arestyrurj-175	35	3	humans	human	NOUN
arestyrurj-175	35	4	both	both	PRON
arestyrurj-175	35	5	express	express	VERB
arestyrurj-175	35	6	vdr	vdr	NOUN
arestyrurj-175	35	7	,	,	PUNCT
arestyrurj-175	35	8	and	and	CCONJ
arestyrurj-175	35	9	vdr	vdr	NOUN
arestyrurj-175	35	10	-	-	PUNCT
arestyrurj-175	35	11	knockout	knockout	NOUN
arestyrurj-175	35	12	mice	mouse	NOUN
arestyrurj-175	35	13	exhibit	exhibit	VERB
arestyrurj-175	35	14	a	a	DET
arestyrurj-175	35	15	phenotype	phenotype	NOUN
arestyrurj-175	35	16	analogous	analogous	ADJ
arestyrurj-175	35	17	to	to	ADP
arestyrurj-175	35	18	severe	severe	ADJ
arestyrurj-175	35	19	vitamin	vitamin	NOUN
arestyrurj-175	35	20	d	d	NOUN
arestyrurj-175	35	21	deficiency	deficiency	NOUN
arestyrurj-175	35	22	in	in	ADP
arestyrurj-175	35	23	humans.[20	humans.[20	PROPN
arestyrurj-175	35	24	]	]	X
arestyrurj-175	35	25	these	these	DET
arestyrurj-175	35	26	findings	finding	NOUN
arestyrurj-175	35	27	suggest	suggest	VERB
arestyrurj-175	35	28	that	that	SCONJ
arestyrurj-175	35	29	the	the	DET
arestyrurj-175	35	30	regulatory	regulatory	ADJ
arestyrurj-175	35	31	role	role	NOUN
arestyrurj-175	35	32	of	of	ADP
arestyrurj-175	35	33	vdr	vdr	NOUN
arestyrurj-175	35	34	is	be	AUX
arestyrurj-175	35	35	similar	similar	ADJ
arestyrurj-175	35	36	in	in	ADP
arestyrurj-175	35	37	mice	mouse	NOUN
arestyrurj-175	35	38	and	and	CCONJ
arestyrurj-175	35	39	humans	human	NOUN
arestyrurj-175	35	40	.	.	PUNCT
arestyrurj-175	36	1	we	we	PRON
arestyrurj-175	36	2	assess	assess	VERB
arestyrurj-175	36	3	vdr	vdr	NOUN
arestyrurj-175	36	4	-	-	PUNCT
arestyrurj-175	36	5	dna	dna	NOUN
arestyrurj-175	36	6	binding	bind	VERB
arestyrurj-175	36	7	in	in	ADP
arestyrurj-175	36	8	mouse	mouse	NOUN
arestyrurj-175	36	9	duodenal	duodenal	ADJ
arestyrurj-175	36	10	villi	villi	NOUN
arestyrurj-175	36	11	,	,	PUNCT
arestyrurj-175	36	12	duodenal	duodenal	ADJ
arestyrurj-175	36	13	crypt	crypt	NOUN
arestyrurj-175	36	14	,	,	PUNCT
arestyrurj-175	36	15	and	and	CCONJ
arestyrurj-175	36	16	colonic	colonic	ADJ
arestyrurj-175	36	17	epithelial	epithelial	ADJ
arestyrurj-175	36	18	cells	cell	NOUN
arestyrurj-175	36	19	using	use	VERB
arestyrurj-175	36	20	chromatin	chromatin	NOUN
arestyrurj-175	36	21	immunoprecipitation	immunoprecipitation	NOUN
arestyrurj-175	36	22	sequencing	sequence	VERB
arestyrurj-175	36	23	(	(	PUNCT
arestyrurj-175	36	24	chip	chip	NOUN
arestyrurj-175	36	25	-	-	PUNCT
arestyrurj-175	36	26	seq	seq	NOUN
arestyrurj-175	36	27	)	)	PUNCT
arestyrurj-175	36	28	.	.	PUNCT
arestyrurj-175	37	1	by	by	ADP
arestyrurj-175	37	2	comparing	compare	VERB
arestyrurj-175	37	3	vdr	vdr	NOUN
arestyrurj-175	37	4	-	-	PUNCT
arestyrurj-175	37	5	dna	dna	PROPN
arestyrurj-175	37	6	bindfigure	bindfigure	NOUN
arestyrurj-175	37	7	1	1	NUM
arestyrurj-175	37	8	:	:	PUNCT
arestyrurj-175	37	9	the	the	DET
arestyrurj-175	37	10	gastrointestinal	gastrointestinal	ADJ
arestyrurj-175	37	11	tract	tract	NOUN
arestyrurj-175	37	12	[	[	X
arestyrurj-175	37	13	2	2	X
arestyrurj-175	37	14	]	]	PUNCT
arestyrurj-175	37	15	the	the	DET
arestyrurj-175	37	16	small	small	ADJ
arestyrurj-175	37	17	and	and	CCONJ
arestyrurj-175	37	18	large	large	ADJ
arestyrurj-175	37	19	intestines	intestine	NOUN
arestyrurj-175	37	20	are	be	AUX
arestyrurj-175	37	21	the	the	DET
arestyrurj-175	37	22	two	two	NUM
arestyrurj-175	37	23	organs	organ	NOUN
arestyrurj-175	37	24	of	of	ADP
arestyrurj-175	37	25	the	the	DET
arestyrurj-175	37	26	lower	low	ADJ
arestyrurj-175	37	27	gastrointestinal	gastrointestinal	ADJ
arestyrurj-175	37	28	tract	tract	NOUN
arestyrurj-175	37	29	.	.	PUNCT
arestyrurj-175	38	1	the	the	DET
arestyrurj-175	38	2	small	small	ADJ
arestyrurj-175	38	3	intestine	intestine	NOUN
arestyrurj-175	38	4	follows	follow	VERB
arestyrurj-175	38	5	the	the	DET
arestyrurj-175	38	6	stomach	stomach	NOUN
arestyrurj-175	38	7	and	and	CCONJ
arestyrurj-175	38	8	is	be	AUX
arestyrurj-175	38	9	divided	divide	VERB
arestyrurj-175	38	10	into	into	ADP
arestyrurj-175	38	11	the	the	DET
arestyrurj-175	38	12	duodenum	duodenum	NOUN
arestyrurj-175	38	13	,	,	PUNCT
arestyrurj-175	38	14	the	the	DET
arestyrurj-175	38	15	jejunum	jejunum	NOUN
arestyrurj-175	38	16	,	,	PUNCT
arestyrurj-175	38	17	and	and	CCONJ
arestyrurj-175	38	18	the	the	DET
arestyrurj-175	38	19	ileum	ileum	NOUN
arestyrurj-175	38	20	.	.	PUNCT
arestyrurj-175	39	1	the	the	DET
arestyrurj-175	39	2	large	large	ADJ
arestyrurj-175	39	3	intestine	intestine	NOUN
arestyrurj-175	39	4	follows	follow	VERB
arestyrurj-175	39	5	the	the	DET
arestyrurj-175	39	6	small	small	ADJ
arestyrurj-175	39	7	intestine	intestine	NOUN
arestyrurj-175	39	8	and	and	CCONJ
arestyrurj-175	39	9	is	be	AUX
arestyrurj-175	39	10	divided	divide	VERB
arestyrurj-175	39	11	into	into	ADP
arestyrurj-175	39	12	the	the	DET
arestyrurj-175	39	13	cecum	cecum	NOUN
arestyrurj-175	39	14	(	(	PUNCT
arestyrurj-175	39	15	not	not	PART
arestyrurj-175	39	16	shown	show	VERB
arestyrurj-175	39	17	)	)	PUNCT
arestyrurj-175	39	18	,	,	PUNCT
arestyrurj-175	39	19	the	the	DET
arestyrurj-175	39	20	colon	colon	NOUN
arestyrurj-175	39	21	,	,	PUNCT
arestyrurj-175	39	22	and	and	CCONJ
arestyrurj-175	39	23	the	the	DET
arestyrurj-175	39	24	rectum	rectum	NOUN
arestyrurj-175	39	25	(	(	PUNCT
arestyrurj-175	39	26	not	not	PART
arestyrurj-175	39	27	shown	show	VERB
arestyrurj-175	39	28	)	)	PUNCT
arestyrurj-175	39	29	.	.	PUNCT
arestyrurj-175	40	1	aresty	aresty	PROPN
arestyrurj-175	40	2	rutgers	rutgers	PROPN
arestyrurj-175	40	3	undergraduate	undergraduate	PROPN
arestyrurj-175	40	4	research	research	PROPN
arestyrurj-175	40	5	journal	journal	PROPN
arestyrurj-175	40	6	,	,	PUNCT
arestyrurj-175	40	7	volume	volume	NOUN
arestyrurj-175	40	8	i	i	PRON
arestyrurj-175	40	9	,	,	PUNCT
arestyrurj-175	40	10	issue	issue	VERB
arestyrurj-175	40	11	iii	iii	PROPN
arestyrurj-175	40	12	ing	ing	ADJ
arestyrurj-175	40	13	across	across	ADP
arestyrurj-175	40	14	cell	cell	NOUN
arestyrurj-175	40	15	types	type	NOUN
arestyrurj-175	40	16	,	,	PUNCT
arestyrurj-175	40	17	we	we	PRON
arestyrurj-175	40	18	identify	identify	VERB
arestyrurj-175	40	19	vdr	vdr	VERB
arestyrurj-175	40	20	-	-	PUNCT
arestyrurj-175	40	21	responsive	responsive	ADJ
arestyrurj-175	40	22	elements	element	NOUN
arestyrurj-175	40	23	that	that	PRON
arestyrurj-175	40	24	are	be	AUX
arestyrurj-175	40	25	regionally	regionally	ADV
arestyrurj-175	40	26	-	-	PUNCT
arestyrurj-175	40	27	enriched	enrich	VERB
arestyrurj-175	40	28	—	—	PUNCT
arestyrurj-175	40	29	exhibiting	exhibit	VERB
arestyrurj-175	40	30	greater	great	ADJ
arestyrurj-175	40	31	vdr	vdr	NOUN
arestyrurj-175	40	32	-	-	PUNCT
arestyrurj-175	40	33	binding	bind	VERB
arestyrurj-175	40	34	affinity	affinity	NOUN
arestyrurj-175	40	35	in	in	ADP
arestyrurj-175	40	36	either	either	CCONJ
arestyrurj-175	40	37	the	the	DET
arestyrurj-175	40	38	duodenum	duodenum	NOUN
arestyrurj-175	40	39	or	or	CCONJ
arestyrurj-175	40	40	in	in	ADP
arestyrurj-175	40	41	the	the	DET
arestyrurj-175	40	42	colon	colon	NOUN
arestyrurj-175	40	43	.	.	PUNCT
arestyrurj-175	41	1	these	these	DET
arestyrurj-175	41	2	regionally	regionally	ADV
arestyrurj-175	41	3	-	-	PUNCT
arestyrurj-175	41	4	enriched	enrich	VERB
arestyrurj-175	41	5	vdr	vdr	NOUN
arestyrurj-175	41	6	-	-	PUNCT
arestyrurj-175	41	7	responsive	responsive	ADJ
arestyrurj-175	41	8	elements	element	NOUN
arestyrurj-175	41	9	can	can	AUX
arestyrurj-175	41	10	not	not	PART
arestyrurj-175	41	11	result	result	VERB
arestyrurj-175	41	12	from	from	ADP
arestyrurj-175	41	13	differences	difference	NOUN
arestyrurj-175	41	14	in	in	ADP
arestyrurj-175	41	15	vdr	vdr	NOUN
arestyrurj-175	41	16	motif	motif	NOUN
arestyrurj-175	41	17	presence	presence	NOUN
arestyrurj-175	41	18	,	,	PUNCT
arestyrurj-175	41	19	since	since	SCONJ
arestyrurj-175	41	20	genomic	genomic	ADJ
arestyrurj-175	41	21	sequences	sequence	NOUN
arestyrurj-175	41	22	do	do	AUX
arestyrurj-175	41	23	not	not	PART
arestyrurj-175	41	24	differ	differ	VERB
arestyrurj-175	41	25	between	between	ADP
arestyrurj-175	41	26	cell	cell	NOUN
arestyrurj-175	41	27	types	type	NOUN
arestyrurj-175	41	28	.	.	PUNCT
arestyrurj-175	42	1	we	we	PRON
arestyrurj-175	42	2	hypothesize	hypothesize	VERB
arestyrurj-175	42	3	that	that	SCONJ
arestyrurj-175	42	4	differences	difference	NOUN
arestyrurj-175	42	5	in	in	ADP
arestyrurj-175	42	6	vdr	vdr	NOUN
arestyrurj-175	42	7	-	-	PUNCT
arestyrurj-175	42	8	dna	dna	ADJ
arestyrurj-175	42	9	binding	bind	VERB
arestyrurj-175	42	10	result	result	NOUN
arestyrurj-175	42	11	from	from	ADP
arestyrurj-175	42	12	differences	difference	NOUN
arestyrurj-175	42	13	in	in	ADP
arestyrurj-175	42	14	open	open	ADJ
arestyrurj-175	42	15	chromatin	chromatin	NOUN
arestyrurj-175	42	16	regions	region	NOUN
arestyrurj-175	42	17	between	between	ADP
arestyrurj-175	42	18	cell	cell	NOUN
arestyrurj-175	42	19	types	type	NOUN
arestyrurj-175	42	20	.	.	PUNCT
arestyrurj-175	43	1	we	we	PRON
arestyrurj-175	43	2	examine	examine	VERB
arestyrurj-175	43	3	this	this	DET
arestyrurj-175	43	4	hypothesis	hypothesis	NOUN
arestyrurj-175	43	5	by	by	ADP
arestyrurj-175	43	6	assessing	assess	VERB
arestyrurj-175	43	7	chromatin	chromatin	NOUN
arestyrurj-175	43	8	accessibility	accessibility	NOUN
arestyrurj-175	43	9	in	in	ADP
arestyrurj-175	43	10	each	each	DET
arestyrurj-175	43	11	cell	cell	NOUN
arestyrurj-175	43	12	type	type	NOUN
arestyrurj-175	43	13	using	use	VERB
arestyrurj-175	43	14	assay	assay	NOUN
arestyrurj-175	43	15	for	for	ADP
arestyrurj-175	43	16	transposase	transposase	NOUN
arestyrurj-175	43	17	-	-	PUNCT
arestyrurj-175	43	18	accessible	accessible	ADJ
arestyrurj-175	43	19	chromatin	chromatin	NOUN
arestyrurj-175	43	20	sequencing	sequence	VERB
arestyrurj-175	43	21	(	(	PUNCT
arestyrurj-175	43	22	atac	atac	NOUN
arestyrurj-175	43	23	-	-	PUNCT
arestyrurj-175	43	24	seq	seq	NOUN
arestyrurj-175	43	25	)	)	PUNCT
arestyrurj-175	43	26	.	.	PUNCT
arestyrurj-175	44	1	by	by	ADP
arestyrurj-175	44	2	integrating	integrate	VERB
arestyrurj-175	44	3	the	the	DET
arestyrurj-175	44	4	vdr	vdr	NOUN
arestyrurj-175	44	5	chip	chip	NOUN
arestyrurj-175	44	6	-	-	PUNCT
arestyrurj-175	44	7	seq	seq	NOUN
arestyrurj-175	44	8	and	and	CCONJ
arestyrurj-175	44	9	the	the	DET
arestyrurj-175	44	10	atac	atac	NOUN
arestyrurj-175	44	11	-	-	PUNCT
arestyrurj-175	44	12	seq	seq	NOUN
arestyrurj-175	44	13	data	datum	NOUN
arestyrurj-175	44	14	,	,	PUNCT
arestyrurj-175	44	15	we	we	PRON
arestyrurj-175	44	16	find	find	VERB
arestyrurj-175	44	17	that	that	SCONJ
arestyrurj-175	44	18	regionally	regionally	ADV
arestyrurj-175	44	19	-	-	PUNCT
arestyrurj-175	44	20	enriched	enrich	VERB
arestyrurj-175	44	21	vdr	vdr	NOUN
arestyrurj-175	44	22	-	-	PUNCT
arestyrurj-175	44	23	responsive	responsive	ADJ
arestyrurj-175	44	24	elements	element	NOUN
arestyrurj-175	44	25	exhibit	exhibit	VERB
arestyrurj-175	44	26	greater	great	ADJ
arestyrurj-175	44	27	chromatin	chromatin	NOUN
arestyrurj-175	44	28	accessibility	accessibility	NOUN
arestyrurj-175	44	29	in	in	ADP
arestyrurj-175	44	30	the	the	DET
arestyrurj-175	44	31	region	region	NOUN
arestyrurj-175	44	32	of	of	ADP
arestyrurj-175	44	33	their	their	PRON
arestyrurj-175	44	34	enrichment	enrichment	NOUN
arestyrurj-175	44	35	.	.	PUNCT
arestyrurj-175	45	1	thus	thus	ADV
arestyrurj-175	45	2	,	,	PUNCT
arestyrurj-175	45	3	we	we	PRON
arestyrurj-175	45	4	conclude	conclude	VERB
arestyrurj-175	45	5	that	that	SCONJ
arestyrurj-175	45	6	differential	differential	ADJ
arestyrurj-175	45	7	chromatin	chromatin	NOUN
arestyrurj-175	45	8	accessibility	accessibility	NOUN
arestyrurj-175	45	9	causes	cause	VERB
arestyrurj-175	45	10	differential	differential	ADJ
arestyrurj-175	45	11	vdr	vdr	NOUN
arestyrurj-175	45	12	-	-	PUNCT
arestyrurj-175	45	13	dna	dna	NOUN
arestyrurj-175	45	14	binding	bind	VERB
arestyrurj-175	45	15	between	between	ADP
arestyrurj-175	45	16	intestinal	intestinal	ADJ
arestyrurj-175	45	17	regions	region	NOUN
arestyrurj-175	45	18	.	.	PUNCT
arestyrurj-175	46	1	finally	finally	ADV
arestyrurj-175	46	2	,	,	PUNCT
arestyrurj-175	46	3	we	we	PRON
arestyrurj-175	46	4	assess	assess	VERB
arestyrurj-175	46	5	the	the	DET
arestyrurj-175	46	6	transcription	transcription	NOUN
arestyrurj-175	46	7	factor	factor	NOUN
arestyrurj-175	46	8	binding	bind	VERB
arestyrurj-175	46	9	site	site	NOUN
arestyrurj-175	46	10	motifs	motif	NOUN
arestyrurj-175	46	11	present	present	ADJ
arestyrurj-175	46	12	in	in	ADP
arestyrurj-175	46	13	vdr	vdr	NOUN
arestyrurj-175	46	14	-	-	PUNCT
arestyrurj-175	46	15	responsive	responsive	ADJ
arestyrurj-175	46	16	elements	element	NOUN
arestyrurj-175	46	17	.	.	PUNCT
arestyrurj-175	47	1	we	we	PRON
arestyrurj-175	47	2	find	find	VERB
arestyrurj-175	47	3	that	that	PRON
arestyrurj-175	47	4	duodenumand	duodenumand	VERB
arestyrurj-175	47	5	colon	colon	NOUN
arestyrurj-175	47	6	-	-	PUNCT
arestyrurj-175	47	7	enriched	enrich	VERB
arestyrurj-175	47	8	vdr	vdr	NOUN
arestyrurj-175	47	9	-	-	PUNCT
arestyrurj-175	47	10	responsive	responsive	ADJ
arestyrurj-175	47	11	elements	element	NOUN
arestyrurj-175	47	12	exhibit	exhibit	VERB
arestyrurj-175	47	13	different	different	ADJ
arestyrurj-175	47	14	sets	set	NOUN
arestyrurj-175	47	15	of	of	ADP
arestyrurj-175	47	16	binding	bind	VERB
arestyrurj-175	47	17	site	site	NOUN
arestyrurj-175	47	18	motifs	motif	NOUN
arestyrurj-175	47	19	for	for	ADP
arestyrurj-175	47	20	transcription	transcription	NOUN
arestyrurj-175	47	21	factors	factor	NOUN
arestyrurj-175	47	22	other	other	ADJ
arestyrurj-175	47	23	than	than	ADP
arestyrurj-175	47	24	vdr	vdr	NOUN
arestyrurj-175	47	25	,	,	PUNCT
arestyrurj-175	47	26	suggesting	suggest	VERB
arestyrurj-175	47	27	that	that	SCONJ
arestyrurj-175	47	28	vdr	vdr	NOUN
arestyrurj-175	47	29	may	may	AUX
arestyrurj-175	47	30	act	act	VERB
arestyrurj-175	47	31	in	in	ADP
arestyrurj-175	47	32	conjunction	conjunction	NOUN
arestyrurj-175	47	33	with	with	ADP
arestyrurj-175	47	34	different	different	ADJ
arestyrurj-175	47	35	partner	partner	NOUN
arestyrurj-175	47	36	transcription	transcription	NOUN
arestyrurj-175	47	37	factors	factor	NOUN
arestyrurj-175	47	38	in	in	ADP
arestyrurj-175	47	39	the	the	DET
arestyrurj-175	47	40	two	two	NUM
arestyrurj-175	47	41	regions	region	NOUN
arestyrurj-175	47	42	.	.	PUNCT
arestyrurj-175	48	1	our	our	PRON
arestyrurj-175	48	2	work	work	NOUN
arestyrurj-175	48	3	is	be	AUX
arestyrurj-175	48	4	the	the	DET
arestyrurj-175	48	5	first	first	ADJ
arestyrurj-175	48	6	survey	survey	NOUN
arestyrurj-175	48	7	of	of	ADP
arestyrurj-175	48	8	vdr	vdr	NOUN
arestyrurj-175	48	9	-	-	PUNCT
arestyrurj-175	48	10	responsive	responsive	ADJ
arestyrurj-175	48	11	elements	element	NOUN
arestyrurj-175	48	12	in	in	ADP
arestyrurj-175	48	13	the	the	DET
arestyrurj-175	48	14	colon	colon	NOUN
arestyrurj-175	48	15	.	.	PUNCT
arestyrurj-175	49	1	we	we	PRON
arestyrurj-175	49	2	find	find	VERB
arestyrurj-175	49	3	that	that	SCONJ
arestyrurj-175	49	4	tissue	tissue	NOUN
arestyrurj-175	49	5	-	-	PUNCT
arestyrurj-175	49	6	enriched	enrich	VERB
arestyrurj-175	49	7	vdr	vdr	NOUN
arestyrurj-175	49	8	-	-	PUNCT
arestyrurj-175	49	9	responsive	responsive	ADJ
arestyrurj-175	49	10	elements	element	NOUN
arestyrurj-175	49	11	in	in	ADP
arestyrurj-175	49	12	duodenal	duodenal	ADJ
arestyrurj-175	49	13	and	and	CCONJ
arestyrurj-175	49	14	colonic	colonic	ADJ
arestyrurj-175	49	15	epithelium	epithelium	NOUN
arestyrurj-175	49	16	cells	cell	NOUN
arestyrurj-175	49	17	differ	differ	VERB
arestyrurj-175	49	18	in	in	ADP
arestyrurj-175	49	19	chromatin	chromatin	NOUN
arestyrurj-175	49	20	accessibility	accessibility	NOUN
arestyrurj-175	49	21	and	and	CCONJ
arestyrurj-175	49	22	secondary	secondary	ADJ
arestyrurj-175	49	23	transcription	transcription	NOUN
arestyrurj-175	49	24	factor	factor	NOUN
arestyrurj-175	49	25	binding	bind	VERB
arestyrurj-175	49	26	motifs	motif	NOUN
arestyrurj-175	49	27	.	.	PUNCT
arestyrurj-175	50	1	these	these	DET
arestyrurj-175	50	2	findings	finding	NOUN
arestyrurj-175	50	3	provide	provide	VERB
arestyrurj-175	50	4	a	a	DET
arestyrurj-175	50	5	basis	basis	NOUN
arestyrurj-175	50	6	for	for	ADP
arestyrurj-175	50	7	further	further	ADJ
arestyrurj-175	50	8	investigations	investigation	NOUN
arestyrurj-175	50	9	of	of	ADP
arestyrurj-175	50	10	differences	difference	NOUN
arestyrurj-175	50	11	in	in	ADP
arestyrurj-175	50	12	vdr	vdr	NOUN
arestyrurj-175	50	13	-	-	PUNCT
arestyrurj-175	50	14	mediated	mediate	VERB
arestyrurj-175	50	15	gene	gene	NOUN
arestyrurj-175	50	16	expression	expression	NOUN
arestyrurj-175	50	17	between	between	ADP
arestyrurj-175	50	18	the	the	DET
arestyrurj-175	50	19	small	small	ADJ
arestyrurj-175	50	20	and	and	CCONJ
arestyrurj-175	50	21	large	large	ADJ
arestyrurj-175	50	22	intestines	intestine	NOUN
arestyrurj-175	50	23	.	.	PUNCT
arestyrurj-175	51	1	understanding	understand	VERB
arestyrurj-175	51	2	the	the	DET
arestyrurj-175	51	3	action	action	NOUN
arestyrurj-175	51	4	of	of	ADP
arestyrurj-175	51	5	vdr	vdr	NOUN
arestyrurj-175	51	6	specific	specific	ADJ
arestyrurj-175	51	7	to	to	ADP
arestyrurj-175	51	8	the	the	DET
arestyrurj-175	51	9	colon	colon	NOUN
arestyrurj-175	51	10	may	may	AUX
arestyrurj-175	51	11	explain	explain	VERB
arestyrurj-175	51	12	the	the	DET
arestyrurj-175	51	13	role	role	NOUN
arestyrurj-175	51	14	of	of	ADP
arestyrurj-175	51	15	vdr	vdr	NOUN
arestyrurj-175	51	16	in	in	ADP
arestyrurj-175	51	17	inflammatory	inflammatory	ADJ
arestyrurj-175	51	18	bowel	bowel	NOUN
arestyrurj-175	51	19	disease	disease	NOUN
arestyrurj-175	51	20	and	and	CCONJ
arestyrurj-175	51	21	colorectal	colorectal	ADJ
arestyrurj-175	51	22	cancer	cancer	NOUN
arestyrurj-175	51	23	.	.	PUNCT
arestyrurj-175	52	1	2	2	NUM
arestyrurj-175	52	2	methodology	methodology	NOUN
arestyrurj-175	52	3	experimental	experimental	ADJ
arestyrurj-175	52	4	mice	mouse	NOUN
arestyrurj-175	52	5	four	four	NUM
arestyrurj-175	52	6	wild	wild	ADJ
arestyrurj-175	52	7	-	-	PUNCT
arestyrurj-175	52	8	type	type	NOUN
arestyrurj-175	52	9	mice	mouse	NOUN
arestyrurj-175	52	10	(	(	PUNCT
arestyrurj-175	52	11	c57bl/6j	c57bl/6j	NOUN
arestyrurj-175	52	12	strain	strain	PROPN
arestyrurj-175	52	13	)	)	PUNCT
arestyrurj-175	52	14	were	be	AUX
arestyrurj-175	52	15	used	use	VERB
arestyrurj-175	52	16	as	as	ADP
arestyrurj-175	52	17	experimental	experimental	ADJ
arestyrurj-175	52	18	animals	animal	NOUN
arestyrurj-175	52	19	.	.	PUNCT
arestyrurj-175	53	1	all	all	DET
arestyrurj-175	53	2	animal	animal	NOUN
arestyrurj-175	53	3	protocols	protocol	NOUN
arestyrurj-175	53	4	were	be	AUX
arestyrurj-175	53	5	approved	approve	VERB
arestyrurj-175	53	6	by	by	ADP
arestyrurj-175	53	7	the	the	DET
arestyrurj-175	53	8	rutgers	rutgers	PROPN
arestyrurj-175	53	9	institutional	institutional	PROPN
arestyrurj-175	53	10	animal	animal	NOUN
arestyrurj-175	53	11	care	care	NOUN
arestyrurj-175	53	12	and	and	CCONJ
arestyrurj-175	53	13	use	use	NOUN
arestyrurj-175	53	14	committee	committee	NOUN
arestyrurj-175	53	15	.	.	PUNCT
arestyrurj-175	54	1	the	the	DET
arestyrurj-175	54	2	mice	mouse	NOUN
arestyrurj-175	54	3	were	be	AUX
arestyrurj-175	54	4	given	give	VERB
arestyrurj-175	54	5	food	food	NOUN
arestyrurj-175	54	6	and	and	CCONJ
arestyrurj-175	54	7	water	water	NOUN
arestyrurj-175	54	8	ad	ad	NOUN
arestyrurj-175	54	9	libitum	libitum	PROPN
arestyrurj-175	54	10	and	and	CCONJ
arestyrurj-175	54	11	exposed	expose	VERB
arestyrurj-175	54	12	to	to	ADP
arestyrurj-175	54	13	a	a	DET
arestyrurj-175	54	14	12	12	NUM
arestyrurj-175	54	15	h	h	NOUN
arestyrurj-175	54	16	light	light	NOUN
arestyrurj-175	54	17	,	,	PUNCT
arestyrurj-175	54	18	12	12	NUM
arestyrurj-175	54	19	h	h	NOUN
arestyrurj-175	54	20	dark	dark	ADJ
arestyrurj-175	54	21	cycle	cycle	NOUN
arestyrurj-175	54	22	.	.	PUNCT
arestyrurj-175	55	1	the	the	DET
arestyrurj-175	55	2	mice	mouse	NOUN
arestyrurj-175	55	3	were	be	AUX
arestyrurj-175	55	4	euthanized	euthanize	VERB
arestyrurj-175	55	5	when	when	SCONJ
arestyrurj-175	55	6	they	they	PRON
arestyrurj-175	55	7	were	be	AUX
arestyrurj-175	55	8	4	4	NUM
arestyrurj-175	55	9	–	–	PUNCT
arestyrurj-175	55	10	6	6	NUM
arestyrurj-175	55	11	weeks	week	NOUN
arestyrurj-175	55	12	old	old	ADJ
arestyrurj-175	55	13	.	.	PUNCT
arestyrurj-175	56	1	one	one	NUM
arestyrurj-175	56	2	hour	hour	NOUN
arestyrurj-175	56	3	prior	prior	ADV
arestyrurj-175	56	4	to	to	ADP
arestyrurj-175	56	5	euthanasia	euthanasia	PROPN
arestyrurj-175	56	6	,	,	PUNCT
arestyrurj-175	56	7	the	the	DET
arestyrurj-175	56	8	mice	mouse	NOUN
arestyrurj-175	56	9	were	be	AUX
arestyrurj-175	56	10	treated	treat	VERB
arestyrurj-175	56	11	with	with	ADP
arestyrurj-175	56	12	10	10	NUM
arestyrurj-175	56	13	ng	ng	PROPN
arestyrurj-175	56	14	/	/	SYM
arestyrurj-175	56	15	g	g	PROPN
arestyrurj-175	56	16	body	body	NOUN
arestyrurj-175	56	17	mass	mass	NOUN
arestyrurj-175	56	18	1,25	1,25	NUM
arestyrurj-175	56	19	-	-	PUNCT
arestyrurj-175	56	20	dihydroxyvitamin	dihydroxyvitamin	ADJ
arestyrurj-175	56	21	d3	d3	PROPN
arestyrurj-175	56	22	(	(	PUNCT
arestyrurj-175	56	23	caymon	caymon	PROPN
arestyrurj-175	56	24	chemical	chemical	PROPN
arestyrurj-175	56	25	:	:	PUNCT
arestyrurj-175	56	26	#	#	SYM
arestyrurj-175	56	27	11792	11792	NUM
arestyrurj-175	56	28	)	)	PUNCT
arestyrurj-175	56	29	,	,	PUNCT
arestyrurj-175	56	30	injected	inject	VERB
arestyrurj-175	56	31	intraperitoneally	intraperitoneally	ADV
arestyrurj-175	56	32	.	.	PUNCT
arestyrurj-175	57	1	sample	sample	NOUN
arestyrurj-175	57	2	preparation	preparation	NOUN
arestyrurj-175	57	3	tissue	tissue	NOUN
arestyrurj-175	57	4	samples	sample	NOUN
arestyrurj-175	57	5	were	be	AUX
arestyrurj-175	57	6	harvested	harvest	VERB
arestyrurj-175	57	7	from	from	ADP
arestyrurj-175	57	8	duodenal	duodenal	ADJ
arestyrurj-175	57	9	villi	villi	NOUN
arestyrurj-175	57	10	,	,	PUNCT
arestyrurj-175	57	11	duodenal	duodenal	ADJ
arestyrurj-175	57	12	crypts	crypt	NOUN
arestyrurj-175	57	13	,	,	PUNCT
arestyrurj-175	57	14	and	and	CCONJ
arestyrurj-175	57	15	colonic	colonic	ADJ
arestyrurj-175	57	16	epithelium	epithelium	NOUN
arestyrurj-175	57	17	of	of	ADP
arestyrurj-175	57	18	the	the	DET
arestyrurj-175	57	19	mice	mouse	NOUN
arestyrurj-175	57	20	immediately	immediately	ADV
arestyrurj-175	57	21	following	follow	VERB
arestyrurj-175	57	22	euthanasia	euthanasia	NOUN
arestyrurj-175	57	23	.	.	PUNCT
arestyrurj-175	58	1	duodenal	duodenal	ADJ
arestyrurj-175	58	2	villi	villi	NOUN
arestyrurj-175	58	3	,	,	PUNCT
arestyrurj-175	58	4	duodenal	duodenal	ADJ
arestyrurj-175	58	5	crypts	crypt	NOUN
arestyrurj-175	58	6	,	,	PUNCT
arestyrurj-175	58	7	and	and	CCONJ
arestyrurj-175	58	8	colonic	colonic	ADJ
arestyrurj-175	58	9	epithelial	epithelial	ADJ
arestyrurj-175	58	10	cells	cell	NOUN
arestyrurj-175	58	11	were	be	AUX
arestyrurj-175	58	12	extracted	extract	VERB
arestyrurj-175	58	13	from	from	ADP
arestyrurj-175	58	14	the	the	DET
arestyrurj-175	58	15	tissue	tissue	NOUN
arestyrurj-175	58	16	samples	sample	NOUN
arestyrurj-175	58	17	and	and	CCONJ
arestyrurj-175	58	18	pelleted	pellete	VERB
arestyrurj-175	58	19	by	by	ADP
arestyrurj-175	58	20	centrifugation.[4	centrifugation.[4	NOUN
arestyrurj-175	58	21	]	]	X
arestyrurj-175	58	22	chip	chip	NOUN
arestyrurj-175	58	23	-	-	PUNCT
arestyrurj-175	58	24	seq	seq	NOUN
arestyrurj-175	58	25	protocol	protocol	NOUN
arestyrurj-175	58	26	&	&	CCONJ
arestyrurj-175	58	27	analysis	analysis	NOUN
arestyrurj-175	58	28	vdr	vdr	NOUN
arestyrurj-175	58	29	-	-	PUNCT
arestyrurj-175	58	30	targeted	target	VERB
arestyrurj-175	58	31	chip	chip	NOUN
arestyrurj-175	58	32	-	-	PUNCT
arestyrurj-175	58	33	seq	seq	NOUN
arestyrurj-175	58	34	was	be	AUX
arestyrurj-175	58	35	conducted	conduct	VERB
arestyrurj-175	58	36	on	on	ADP
arestyrurj-175	58	37	the	the	DET
arestyrurj-175	58	38	duodenal	duodenal	ADJ
arestyrurj-175	58	39	villi	villi	NOUN
arestyrurj-175	58	40	,	,	PUNCT
arestyrurj-175	58	41	duodenal	duodenal	ADJ
arestyrurj-175	58	42	crypts	crypt	NOUN
arestyrurj-175	58	43	,	,	PUNCT
arestyrurj-175	58	44	and	and	CCONJ
arestyrurj-175	58	45	colonic	colonic	ADJ
arestyrurj-175	58	46	epithelial	epithelial	ADJ
arestyrurj-175	58	47	cells	cell	NOUN
arestyrurj-175	58	48	using	use	VERB
arestyrurj-175	58	49	mouse	mouse	NOUN
arestyrurj-175	58	50	monoclonal	monoclonal	NOUN
arestyrurj-175	58	51	igg2a	igg2a	PUNCT
arestyrurj-175	59	1	vdr	vdr	NOUN
arestyrurj-175	59	2	antibody	antibody	NOUN
arestyrurj-175	59	3	d-6	d-6	ADV
arestyrurj-175	59	4	(	(	PUNCT
arestyrurj-175	59	5	santa	santa	PROPN
arestyrurj-175	59	6	cruz	cruz	PROPN
arestyrurj-175	59	7	biotechnology	biotechnology	PROPN
arestyrurj-175	59	8	:	:	PUNCT
arestyrurj-175	60	1	#	#	SYM
arestyrurj-175	60	2	sc-13133	sc-13133	NOUN
arestyrurj-175	60	3	)	)	PUNCT
arestyrurj-175	60	4	and	and	CCONJ
arestyrurj-175	60	5	rabbit	rabbit	NOUN
arestyrurj-175	60	6	polyclonal	polyclonal	PROPN
arestyrurj-175	60	7	igg	igg	PROPN
arestyrurj-175	60	8	vdr	vdr	PROPN
arestyrurj-175	60	9	antibody	antibody	NOUN
arestyrurj-175	60	10	c-20	c-20	NOUN
arestyrurj-175	60	11	(	(	PUNCT
arestyrurj-175	60	12	santa	santa	PROPN
arestyrurj-175	60	13	cruz	cruz	PROPN
arestyrurj-175	60	14	biotechnology	biotechnology	PROPN
arestyrurj-175	60	15	:	:	PUNCT
arestyrurj-175	60	16	#	#	SYM
arestyrurj-175	60	17	sc-1008	sc-1008	NOUN
arestyrurj-175	60	18	)	)	PUNCT
arestyrurj-175	60	19	.	.	PUNCT
arestyrurj-175	61	1	the	the	DET
arestyrurj-175	61	2	vdr	vdr	NOUN
arestyrurj-175	61	3	binding	bind	VERB
arestyrurj-175	61	4	site	site	NOUN
arestyrurj-175	61	5	library	library	NOUN
arestyrurj-175	61	6	was	be	AUX
arestyrurj-175	61	7	purified	purify	VERB
arestyrurj-175	61	8	and	and	CCONJ
arestyrurj-175	61	9	amplified	amplify	VERB
arestyrurj-175	61	10	using	use	VERB
arestyrurj-175	61	11	qiaquick	qiaquick	VERB
arestyrurj-175	61	12	pcr	pcr	NOUN
arestyrurj-175	61	13	purification	purification	NOUN
arestyrurj-175	61	14	kit	kit	NOUN
arestyrurj-175	61	15	#	#	SYM
arestyrurj-175	61	16	50	50	NUM
arestyrurj-175	61	17	(	(	PUNCT
arestyrurj-175	61	18	qiagen	qiagen	NOUN
arestyrurj-175	61	19	:	:	PUNCT
arestyrurj-175	61	20	#	#	SYM
arestyrurj-175	61	21	28104	28104	NUM
arestyrurj-175	61	22	)	)	PUNCT
arestyrurj-175	61	23	before	before	ADP
arestyrurj-175	61	24	being	be	AUX
arestyrurj-175	61	25	sequenced	sequence	VERB
arestyrurj-175	61	26	.	.	PUNCT
arestyrurj-175	62	1	sequencing	sequence	VERB
arestyrurj-175	62	2	adapters	adapter	NOUN
arestyrurj-175	62	3	were	be	AUX
arestyrurj-175	62	4	removed	remove	VERB
arestyrurj-175	62	5	from	from	ADP
arestyrurj-175	62	6	the	the	DET
arestyrurj-175	62	7	vdr	vdr	NOUN
arestyrurj-175	62	8	chip	chip	NOUN
arestyrurj-175	62	9	-	-	PUNCT
arestyrurj-175	62	10	seq	seq	NOUN
arestyrurj-175	62	11	read	read	VERB
arestyrurj-175	62	12	fastq	fastq	ADJ
arestyrurj-175	62	13	files	file	NOUN
arestyrurj-175	62	14	using	use	VERB
arestyrurj-175	62	15	ngmerge.[9	ngmerge.[9	NUM
arestyrurj-175	62	16	]	]	PUNCT
arestyrurj-175	62	17	each	each	DET
arestyrurj-175	62	18	pair	pair	NOUN
arestyrurj-175	62	19	of	of	ADP
arestyrurj-175	62	20	forward	forward	ADV
arestyrurj-175	62	21	and	and	CCONJ
arestyrurj-175	62	22	reverse	reverse	VERB
arestyrurj-175	62	23	adapter	adapter	NOUN
arestyrurj-175	62	24	-	-	PUNCT
arestyrurj-175	62	25	trimmed	trim	VERB
arestyrurj-175	62	26	read	read	VERB
arestyrurj-175	62	27	fastq	fastq	ADJ
arestyrurj-175	62	28	files	file	NOUN
arestyrurj-175	62	29	was	be	AUX
arestyrurj-175	62	30	aligned	align	VERB
arestyrurj-175	62	31	to	to	PART
arestyrurj-175	62	32	mouse	mouse	VERB
arestyrurj-175	62	33	genome	genome	NOUN
arestyrurj-175	62	34	assembly	assembly	NOUN
arestyrurj-175	62	35	mm9	mm9	NOUN
arestyrurj-175	62	36	using	use	VERB
arestyrurj-175	62	37	bowtie2.[10,15	bowtie2.[10,15	PROPN
arestyrurj-175	62	38	]	]	PUNCT
arestyrurj-175	62	39	each	each	DET
arestyrurj-175	62	40	alignment	alignment	NOUN
arestyrurj-175	62	41	sam	sam	PROPN
arestyrurj-175	62	42	file	file	NOUN
arestyrurj-175	62	43	was	be	AUX
arestyrurj-175	62	44	converted	convert	VERB
arestyrurj-175	62	45	to	to	ADP
arestyrurj-175	62	46	an	an	DET
arestyrurj-175	62	47	alignment	alignment	NOUN
arestyrurj-175	62	48	bam	bam	NOUN
arestyrurj-175	62	49	file	file	NOUN
arestyrurj-175	62	50	using	use	VERB
arestyrurj-175	62	51	the	the	DET
arestyrurj-175	62	52	samtools	samtool	NOUN
arestyrurj-175	62	53	suite.[13	suite.[13	PROPN
arestyrurj-175	62	54	]	]	PUNCT
arestyrurj-175	62	55	a	a	DET
arestyrurj-175	62	56	composite	composite	ADJ
arestyrurj-175	62	57	vdr	vdr	NOUN
arestyrurj-175	62	58	chip	chip	NOUN
arestyrurj-175	62	59	-	-	PUNCT
arestyrurj-175	62	60	seq	seq	NOUN
arestyrurj-175	62	61	alignment	alignment	NOUN
arestyrurj-175	62	62	bam	bam	NOUN
arestyrurj-175	62	63	file	file	NOUN
arestyrurj-175	62	64	was	be	AUX
arestyrurj-175	62	65	generated	generate	VERB
arestyrurj-175	62	66	for	for	ADP
arestyrurj-175	62	67	each	each	DET
arestyrurj-175	62	68	cell	cell	NOUN
arestyrurj-175	62	69	type	type	NOUN
arestyrurj-175	62	70	by	by	ADP
arestyrurj-175	62	71	combining	combine	VERB
arestyrurj-175	62	72	each	each	DET
arestyrurj-175	62	73	set	set	NOUN
arestyrurj-175	62	74	of	of	ADP
arestyrurj-175	62	75	replicate	replicate	ADJ
arestyrurj-175	62	76	vdr	vdr	NOUN
arestyrurj-175	62	77	chip	chip	NOUN
arestyrurj-175	62	78	-	-	PUNCT
arestyrurj-175	62	79	seq	seq	NOUN
arestyrurj-175	62	80	alignment	alignment	NOUN
arestyrurj-175	62	81	bam	bam	NOUN
arestyrurj-175	62	82	files	file	NOUN
arestyrurj-175	62	83	using	use	VERB
arestyrurj-175	62	84	the	the	DET
arestyrurj-175	62	85	merge	merge	NOUN
arestyrurj-175	62	86	utility	utility	NOUN
arestyrurj-175	62	87	in	in	ADP
arestyrurj-175	62	88	the	the	DET
arestyrurj-175	62	89	samtools	samtools	PROPN
arestyrurj-175	62	90	suite	suite	PROPN
arestyrurj-175	62	91	.	.	PUNCT
arestyrurj-175	63	1	an	an	DET
arestyrurj-175	63	2	alignment	alignment	NOUN
arestyrurj-175	63	3	track	track	NOUN
arestyrurj-175	63	4	bigwig	bigwig	NOUN
arestyrurj-175	63	5	file	file	NOUN
arestyrurj-175	63	6	was	be	AUX
arestyrurj-175	63	7	generated	generate	VERB
arestyrurj-175	63	8	from	from	ADP
arestyrurj-175	63	9	each	each	DET
arestyrurj-175	63	10	composite	composite	ADJ
arestyrurj-175	63	11	and	and	CCONJ
arestyrurj-175	63	12	replicate	replicate	VERB
arestyrurj-175	63	13	alignment	alignment	NOUN
arestyrurj-175	63	14	bam	bam	NOUN
arestyrurj-175	63	15	file	file	NOUN
arestyrurj-175	63	16	using	use	VERB
arestyrurj-175	63	17	the	the	DET
arestyrurj-175	63	18	bamcoverage	bamcoverage	NOUN
arestyrurj-175	63	19	utility	utility	NOUN
arestyrurj-175	63	20	in	in	ADP
arestyrurj-175	63	21	the	the	DET
arestyrurj-175	63	22	deeptools	deeptool	NOUN
arestyrurj-175	63	23	suite.[18	suite.[18	PROPN
arestyrurj-175	63	24	]	]	PUNCT
arestyrurj-175	63	25	vdr	vdr	NOUN
arestyrurj-175	63	26	-	-	PUNCT
arestyrurj-175	63	27	binding	bind	VERB
arestyrurj-175	63	28	peaks	peak	NOUN
arestyrurj-175	63	29	were	be	AUX
arestyrurj-175	63	30	identified	identify	VERB
arestyrurj-175	63	31	from	from	ADP
arestyrurj-175	63	32	each	each	DET
arestyrurj-175	63	33	vdr	vdr	NOUN
arestyrurj-175	63	34	chip	chip	NOUN
arestyrurj-175	63	35	-	-	PUNCT
arestyrurj-175	63	36	seq	seq	NOUN
arestyrurj-175	63	37	alignment	alignment	NOUN
arestyrurj-175	63	38	bam	bam	NOUN
arestyrurj-175	63	39	file	file	NOUN
arestyrurj-175	63	40	using	use	VERB
arestyrurj-175	63	41	the	the	DET
arestyrurj-175	63	42	callpeak	callpeak	NOUN
arestyrurj-175	63	43	utility	utility	NOUN
arestyrurj-175	63	44	in	in	ADP
arestyrurj-175	63	45	macs.[22	macs.[22	NOUN
arestyrurj-175	63	46	]	]	PUNCT
arestyrurj-175	63	47	peaks	peak	NOUN
arestyrurj-175	63	48	overlapping	overlap	VERB
arestyrurj-175	63	49	encode	encode	ADJ
arestyrurj-175	63	50	mm9	mm9	PROPN
arestyrurj-175	63	51	blacklisted	blacklist	VERB
arestyrurj-175	63	52	regions	region	NOUN
arestyrurj-175	63	53	were	be	AUX
arestyrurj-175	63	54	removed	remove	VERB
arestyrurj-175	63	55	from	from	ADP
arestyrurj-175	63	56	each	each	DET
arestyrurj-175	63	57	peak	peak	NOUN
arestyrurj-175	63	58	set	set	VERB
arestyrurj-175	63	59	bed	bed	NOUN
arestyrurj-175	63	60	file	file	NOUN
arestyrurj-175	63	61	using	use	VERB
arestyrurj-175	63	62	the	the	DET
arestyrurj-175	63	63	subtract	subtract	ADJ
arestyrurj-175	63	64	utility	utility	NOUN
arestyrurj-175	63	65	in	in	ADP
arestyrurj-175	63	66	the	the	DET
arestyrurj-175	63	67	bedtools	bedtool	NOUN
arestyrurj-175	63	68	suite.[17	suite.[17	PROPN
arestyrurj-175	63	69	]	]	PUNCT
arestyrurj-175	63	70	the	the	DET
arestyrurj-175	63	71	encode	encode	ADJ
arestyrurj-175	63	72	blacklists	blacklist	NOUN
arestyrurj-175	63	73	list	list	VERB
arestyrurj-175	63	74	genomic	genomic	ADJ
arestyrurj-175	63	75	regions	region	NOUN
arestyrurj-175	63	76	known	know	VERB
arestyrurj-175	63	77	to	to	PART
arestyrurj-175	63	78	yield	yield	VERB
arestyrurj-175	63	79	false	false	ADJ
arestyrurj-175	63	80	chip	chip	NOUN
arestyrurj-175	63	81	-	-	PUNCT
arestyrurj-175	63	82	seq	seq	NOUN
arestyrurj-175	63	83	signals	signal	NOUN
arestyrurj-175	63	84	aresty	aresty	ADJ
arestyrurj-175	63	85	rutgers	rutgers	PROPN
arestyrurj-175	63	86	undergraduate	undergraduate	PROPN
arestyrurj-175	63	87	research	research	PROPN
arestyrurj-175	63	88	journal	journal	PROPN
arestyrurj-175	63	89	,	,	PUNCT
arestyrurj-175	63	90	volume	volume	NOUN
arestyrurj-175	63	91	i	i	PRON
arestyrurj-175	63	92	,	,	PUNCT
arestyrurj-175	63	93	issue	issue	VERB
arestyrurj-175	63	94	iii	iii	NUM
arestyrurj-175	63	95	due	due	ADP
arestyrurj-175	63	96	to	to	ADP
arestyrurj-175	63	97	the	the	DET
arestyrurj-175	63	98	inaccuracies	inaccuracy	NOUN
arestyrurj-175	63	99	of	of	ADP
arestyrurj-175	63	100	a	a	DET
arestyrurj-175	63	101	particular	particular	ADJ
arestyrurj-175	63	102	genome	genome	NOUN
arestyrurj-175	63	103	assembly.[1	assembly.[1	NOUN
arestyrurj-175	63	104	]	]	PUNCT
arestyrurj-175	63	105	each	each	DET
arestyrurj-175	63	106	peak	peak	NOUN
arestyrurj-175	63	107	set	set	VERB
arestyrurj-175	63	108	bed	bed	NOUN
arestyrurj-175	63	109	file	file	NOUN
arestyrurj-175	63	110	was	be	AUX
arestyrurj-175	63	111	then	then	ADV
arestyrurj-175	63	112	shifted	shift	VERB
arestyrurj-175	63	113	so	so	SCONJ
arestyrurj-175	63	114	that	that	SCONJ
arestyrurj-175	63	115	each	each	DET
arestyrurj-175	63	116	peak	peak	NOUN
arestyrurj-175	63	117	would	would	AUX
arestyrurj-175	63	118	be	be	AUX
arestyrurj-175	63	119	centered	center	VERB
arestyrurj-175	63	120	on	on	ADP
arestyrurj-175	63	121	its	its	PRON
arestyrurj-175	63	122	summit	summit	NOUN
arestyrurj-175	63	123	–	–	PUNCT
arestyrurj-175	63	124	the	the	DET
arestyrurj-175	63	125	nucleotide	nucleotide	NOUN
arestyrurj-175	63	126	with	with	ADP
arestyrurj-175	63	127	the	the	DET
arestyrurj-175	63	128	greatest	great	ADJ
arestyrurj-175	63	129	chip	chip	NOUN
arestyrurj-175	63	130	-	-	PUNCT
arestyrurj-175	63	131	seq	seq	NOUN
arestyrurj-175	63	132	signal	signal	NOUN
arestyrurj-175	63	133	within	within	ADP
arestyrurj-175	63	134	the	the	DET
arestyrurj-175	63	135	peak	peak	NOUN
arestyrurj-175	63	136	region	region	NOUN
arestyrurj-175	63	137	,	,	PUNCT
arestyrurj-175	63	138	as	as	SCONJ
arestyrurj-175	63	139	determined	determine	VERB
arestyrurj-175	63	140	by	by	ADP
arestyrurj-175	63	141	macs	mac	NOUN
arestyrurj-175	63	142	.	.	PUNCT
arestyrurj-175	64	1	the	the	DET
arestyrurj-175	64	2	summit	summit	NOUN
arestyrurj-175	64	3	of	of	ADP
arestyrurj-175	64	4	each	each	DET
arestyrurj-175	64	5	peak	peak	NOUN
arestyrurj-175	64	6	represents	represent	VERB
arestyrurj-175	64	7	the	the	DET
arestyrurj-175	64	8	most	most	ADV
arestyrurj-175	64	9	probable	probable	ADJ
arestyrurj-175	64	10	transcription	transcription	NOUN
arestyrurj-175	64	11	factor	factor	NOUN
arestyrurj-175	64	12	binding	bind	VERB
arestyrurj-175	64	13	site	site	NOUN
arestyrurj-175	64	14	;	;	PUNCT
arestyrurj-175	64	15	therefore	therefore	ADV
arestyrurj-175	64	16	,	,	PUNCT
arestyrurj-175	64	17	summit	summit	NOUN
arestyrurj-175	64	18	-	-	PUNCT
arestyrurj-175	64	19	centering	center	VERB
arestyrurj-175	64	20	ensures	ensure	NOUN
arestyrurj-175	64	21	that	that	SCONJ
arestyrurj-175	64	22	each	each	DET
arestyrurj-175	64	23	peak	peak	NOUN
arestyrurj-175	64	24	is	be	AUX
arestyrurj-175	64	25	centered	center	VERB
arestyrurj-175	64	26	around	around	ADP
arestyrurj-175	64	27	the	the	DET
arestyrurj-175	64	28	binding	bind	VERB
arestyrurj-175	64	29	site	site	NOUN
arestyrurj-175	64	30	.	.	PUNCT
arestyrurj-175	65	1	for	for	ADP
arestyrurj-175	65	2	each	each	DET
arestyrurj-175	65	3	cell	cell	NOUN
arestyrurj-175	65	4	type	type	NOUN
arestyrurj-175	65	5	composite	composite	NOUN
arestyrurj-175	65	6	,	,	PUNCT
arestyrurj-175	65	7	the	the	DET
arestyrurj-175	65	8	vdr	vdr	NOUN
arestyrurj-175	65	9	chipseq	chipseq	NOUN
arestyrurj-175	65	10	signal	signal	NOUN
arestyrurj-175	65	11	was	be	AUX
arestyrurj-175	65	12	plotted	plot	VERB
arestyrurj-175	65	13	versus	versus	ADP
arestyrurj-175	65	14	distance	distance	NOUN
arestyrurj-175	65	15	from	from	ADP
arestyrurj-175	65	16	the	the	DET
arestyrurj-175	65	17	nearest	near	ADJ
arestyrurj-175	65	18	vdr	vdr	NOUN
arestyrurj-175	65	19	chip	chip	NOUN
arestyrurj-175	65	20	-	-	PUNCT
arestyrurj-175	65	21	seq	seq	NOUN
arestyrurj-175	65	22	peak	peak	NOUN
arestyrurj-175	65	23	using	use	VERB
arestyrurj-175	65	24	the	the	DET
arestyrurj-175	65	25	siteprobw	siteprobw	NOUN
arestyrurj-175	65	26	program	program	NOUN
arestyrurj-175	65	27	included	include	VERB
arestyrurj-175	65	28	in	in	ADP
arestyrurj-175	65	29	the	the	DET
arestyrurj-175	65	30	cistrome	cistrome	NOUN
arestyrurj-175	65	31	suite.[14	suite.[14	PROPN
arestyrurj-175	65	32	]	]	PUNCT
arestyrurj-175	65	33	atac	atac	PROPN
arestyrurj-175	65	34	-	-	PUNCT
arestyrurj-175	65	35	seq	seq	NOUN
arestyrurj-175	65	36	protocol	protocol	PROPN
arestyrurj-175	65	37	&	&	CCONJ
arestyrurj-175	65	38	analysis	analysis	PROPN
arestyrurj-175	65	39	atac	atac	NOUN
arestyrurj-175	65	40	-	-	PUNCT
arestyrurj-175	65	41	seq	seq	NOUN
arestyrurj-175	65	42	was	be	AUX
arestyrurj-175	65	43	conducted	conduct	VERB
arestyrurj-175	65	44	on	on	ADP
arestyrurj-175	65	45	the	the	DET
arestyrurj-175	65	46	duodenal	duodenal	ADJ
arestyrurj-175	65	47	villi	villi	NOUN
arestyrurj-175	65	48	,	,	PUNCT
arestyrurj-175	65	49	duodenal	duodenal	ADJ
arestyrurj-175	65	50	crypts	crypt	NOUN
arestyrurj-175	65	51	,	,	PUNCT
arestyrurj-175	65	52	and	and	CCONJ
arestyrurj-175	65	53	colonic	colonic	ADJ
arestyrurj-175	65	54	epithelial	epithelial	ADJ
arestyrurj-175	65	55	cells	cell	NOUN
arestyrurj-175	65	56	using	use	VERB
arestyrurj-175	65	57	nextera	nextera	NOUN
arestyrurj-175	66	1	tn5	tn5	PROPN
arestyrurj-175	66	2	transposase	transposase	PROPN
arestyrurj-175	66	3	(	(	PUNCT
arestyrurj-175	66	4	illumina	illumina	PROPN
arestyrurj-175	66	5	:	:	PUNCT
arestyrurj-175	66	6	#	#	SYM
arestyrurj-175	66	7	fc-121	fc-121	ADJ
arestyrurj-175	66	8	-	-	PUNCT
arestyrurj-175	66	9	1030	1030	NUM
arestyrurj-175	66	10	)	)	PUNCT
arestyrurj-175	66	11	.	.	PUNCT
arestyrurj-175	67	1	the	the	DET
arestyrurj-175	67	2	transposed	transpose	VERB
arestyrurj-175	67	3	chromatin	chromatin	NOUN
arestyrurj-175	67	4	was	be	AUX
arestyrurj-175	67	5	purified	purify	VERB
arestyrurj-175	67	6	and	and	CCONJ
arestyrurj-175	67	7	amplified	amplify	VERB
arestyrurj-175	67	8	using	use	VERB
arestyrurj-175	67	9	qiaquick	qiaquick	VERB
arestyrurj-175	67	10	pcr	pcr	NOUN
arestyrurj-175	67	11	purification	purification	NOUN
arestyrurj-175	67	12	kit	kit	NOUN
arestyrurj-175	67	13	#	#	SYM
arestyrurj-175	67	14	50	50	NUM
arestyrurj-175	67	15	(	(	PUNCT
arestyrurj-175	67	16	qiagen	qiagen	NOUN
arestyrurj-175	67	17	:	:	PUNCT
arestyrurj-175	67	18	#	#	SYM
arestyrurj-175	67	19	28104	28104	NUM
arestyrurj-175	67	20	)	)	PUNCT
arestyrurj-175	67	21	before	before	ADP
arestyrurj-175	67	22	being	be	AUX
arestyrurj-175	67	23	sequenced	sequence	VERB
arestyrurj-175	67	24	.	.	PUNCT
arestyrurj-175	68	1	sequencing	sequence	VERB
arestyrurj-175	68	2	adapters	adapter	NOUN
arestyrurj-175	68	3	were	be	AUX
arestyrurj-175	68	4	removed	remove	VERB
arestyrurj-175	68	5	from	from	ADP
arestyrurj-175	68	6	the	the	DET
arestyrurj-175	68	7	atac	atac	NOUN
arestyrurj-175	68	8	-	-	PUNCT
arestyrurj-175	68	9	seq	seq	NOUN
arestyrurj-175	68	10	read	read	VERB
arestyrurj-175	68	11	fastq	fastq	ADJ
arestyrurj-175	68	12	files	file	NOUN
arestyrurj-175	68	13	using	use	VERB
arestyrurj-175	68	14	ngmerge.[9	ngmerge.[9	NUM
arestyrurj-175	68	15	]	]	PUNCT
arestyrurj-175	68	16	each	each	DET
arestyrurj-175	68	17	pair	pair	NOUN
arestyrurj-175	68	18	of	of	ADP
arestyrurj-175	68	19	forward	forward	ADV
arestyrurj-175	68	20	and	and	CCONJ
arestyrurj-175	68	21	reverse	reverse	VERB
arestyrurj-175	68	22	adapter	adapter	NOUN
arestyrurj-175	68	23	-	-	PUNCT
arestyrurj-175	68	24	trimmed	trim	VERB
arestyrurj-175	68	25	read	read	VERB
arestyrurj-175	68	26	fastq	fastq	ADJ
arestyrurj-175	68	27	files	file	NOUN
arestyrurj-175	68	28	was	be	AUX
arestyrurj-175	68	29	aligned	align	VERB
arestyrurj-175	68	30	to	to	PART
arestyrurj-175	68	31	mouse	mouse	VERB
arestyrurj-175	68	32	genome	genome	NOUN
arestyrurj-175	68	33	assembly	assembly	NOUN
arestyrurj-175	68	34	mm9	mm9	NOUN
arestyrurj-175	68	35	using	use	VERB
arestyrurj-175	68	36	bowtie2.[10,15	bowtie2.[10,15	PROPN
arestyrurj-175	68	37	]	]	PUNCT
arestyrurj-175	68	38	each	each	DET
arestyrurj-175	68	39	alignment	alignment	NOUN
arestyrurj-175	68	40	sam	sam	PROPN
arestyrurj-175	68	41	file	file	NOUN
arestyrurj-175	68	42	was	be	AUX
arestyrurj-175	68	43	converted	convert	VERB
arestyrurj-175	68	44	to	to	ADP
arestyrurj-175	68	45	an	an	DET
arestyrurj-175	68	46	alignment	alignment	NOUN
arestyrurj-175	68	47	bam	bam	NOUN
arestyrurj-175	68	48	file	file	NOUN
arestyrurj-175	68	49	using	use	VERB
arestyrurj-175	68	50	the	the	DET
arestyrurj-175	68	51	samtools	samtool	NOUN
arestyrurj-175	68	52	suite.[13	suite.[13	PROPN
arestyrurj-175	68	53	]	]	PUNCT
arestyrurj-175	68	54	a	a	DET
arestyrurj-175	68	55	composite	composite	ADJ
arestyrurj-175	68	56	atac	atac	NOUN
arestyrurj-175	68	57	-	-	PUNCT
arestyrurj-175	68	58	seq	seq	NOUN
arestyrurj-175	68	59	alignment	alignment	NOUN
arestyrurj-175	68	60	bam	bam	NOUN
arestyrurj-175	68	61	file	file	NOUN
arestyrurj-175	68	62	was	be	AUX
arestyrurj-175	68	63	generated	generate	VERB
arestyrurj-175	68	64	for	for	ADP
arestyrurj-175	68	65	each	each	DET
arestyrurj-175	68	66	cell	cell	NOUN
arestyrurj-175	68	67	type	type	NOUN
arestyrurj-175	68	68	by	by	ADP
arestyrurj-175	68	69	combining	combine	VERB
arestyrurj-175	68	70	each	each	DET
arestyrurj-175	68	71	set	set	NOUN
arestyrurj-175	68	72	of	of	ADP
arestyrurj-175	68	73	replicate	replicate	ADJ
arestyrurj-175	68	74	atac	atac	NOUN
arestyrurj-175	68	75	-	-	PUNCT
arestyrurj-175	68	76	seq	seq	NOUN
arestyrurj-175	68	77	alignment	alignment	NOUN
arestyrurj-175	68	78	bam	bam	NOUN
arestyrurj-175	68	79	files	file	NOUN
arestyrurj-175	68	80	using	use	VERB
arestyrurj-175	68	81	the	the	DET
arestyrurj-175	68	82	merge	merge	NOUN
arestyrurj-175	68	83	utility	utility	NOUN
arestyrurj-175	68	84	in	in	ADP
arestyrurj-175	68	85	the	the	DET
arestyrurj-175	68	86	samtools	samtools	PROPN
arestyrurj-175	68	87	suite	suite	PROPN
arestyrurj-175	68	88	.	.	PUNCT
arestyrurj-175	69	1	an	an	DET
arestyrurj-175	69	2	alignment	alignment	NOUN
arestyrurj-175	69	3	track	track	NOUN
arestyrurj-175	69	4	bigwig	bigwig	NOUN
arestyrurj-175	69	5	file	file	NOUN
arestyrurj-175	69	6	was	be	AUX
arestyrurj-175	69	7	generated	generate	VERB
arestyrurj-175	69	8	from	from	ADP
arestyrurj-175	69	9	each	each	DET
arestyrurj-175	69	10	composite	composite	ADJ
arestyrurj-175	69	11	and	and	CCONJ
arestyrurj-175	69	12	replicate	replicate	VERB
arestyrurj-175	69	13	alignment	alignment	NOUN
arestyrurj-175	69	14	bam	bam	NOUN
arestyrurj-175	69	15	file	file	NOUN
arestyrurj-175	69	16	using	use	VERB
arestyrurj-175	69	17	the	the	DET
arestyrurj-175	69	18	bamcoverage	bamcoverage	NOUN
arestyrurj-175	69	19	utility	utility	NOUN
arestyrurj-175	69	20	in	in	ADP
arestyrurj-175	69	21	the	the	DET
arestyrurj-175	69	22	deeptools	deeptool	NOUN
arestyrurj-175	69	23	suite.[18	suite.[18	PROPN
arestyrurj-175	69	24	]	]	PUNCT
arestyrurj-175	69	25	the	the	DET
arestyrurj-175	69	26	median	median	ADJ
arestyrurj-175	69	27	alignment	alignment	NOUN
arestyrurj-175	69	28	size	size	NOUN
arestyrurj-175	69	29	of	of	ADP
arestyrurj-175	69	30	each	each	DET
arestyrurj-175	69	31	atacseq	atacseq	NOUN
arestyrurj-175	69	32	alignment	alignment	NOUN
arestyrurj-175	69	33	bam	bam	NOUN
arestyrurj-175	69	34	file	file	NOUN
arestyrurj-175	69	35	was	be	AUX
arestyrurj-175	69	36	determined	determine	VERB
arestyrurj-175	69	37	using	use	VERB
arestyrurj-175	69	38	the	the	DET
arestyrurj-175	69	39	collectinsertsizemetrics	collectinsertsizemetric	NOUN
arestyrurj-175	69	40	utility	utility	NOUN
arestyrurj-175	69	41	included	include	VERB
arestyrurj-175	69	42	in	in	ADP
arestyrurj-175	69	43	the	the	DET
arestyrurj-175	69	44	picard	picard	PROPN
arestyrurj-175	69	45	suite.[3	suite.[3	PROPN
arestyrurj-175	69	46	]	]	PUNCT
arestyrurj-175	69	47	each	each	DET
arestyrurj-175	69	48	alignment	alignment	NOUN
arestyrurj-175	69	49	bam	bam	NOUN
arestyrurj-175	69	50	file	file	NOUN
arestyrurj-175	69	51	was	be	AUX
arestyrurj-175	69	52	converted	convert	VERB
arestyrurj-175	69	53	to	to	ADP
arestyrurj-175	69	54	a	a	DET
arestyrurj-175	69	55	bed	bed	NOUN
arestyrurj-175	69	56	file	file	NOUN
arestyrurj-175	69	57	using	use	VERB
arestyrurj-175	69	58	the	the	DET
arestyrurj-175	69	59	bamtobed	bamtobe	VERB
arestyrurj-175	69	60	utility	utility	NOUN
arestyrurj-175	69	61	included	include	VERB
arestyrurj-175	69	62	in	in	ADP
arestyrurj-175	69	63	the	the	DET
arestyrurj-175	69	64	bedtools	bedtool	NOUN
arestyrurj-175	69	65	suite.[17	suite.[17	PROPN
arestyrurj-175	69	66	]	]	PUNCT
arestyrurj-175	69	67	peak	peak	NOUN
arestyrurj-175	69	68	region	region	NOUN
arestyrurj-175	69	69	bed	bed	NOUN
arestyrurj-175	69	70	files	file	NOUN
arestyrurj-175	69	71	were	be	AUX
arestyrurj-175	69	72	called	call	VERB
arestyrurj-175	69	73	from	from	ADP
arestyrurj-175	69	74	each	each	DET
arestyrurj-175	69	75	alignment	alignment	NOUN
arestyrurj-175	69	76	bed	bed	NOUN
arestyrurj-175	69	77	file	file	NOUN
arestyrurj-175	69	78	using	use	VERB
arestyrurj-175	69	79	macs.[22	macs.[22	NOUN
arestyrurj-175	69	80	]	]	X
arestyrurj-175	69	81	it	it	PRON
arestyrurj-175	69	82	was	be	AUX
arestyrurj-175	69	83	necessary	necessary	ADJ
arestyrurj-175	69	84	to	to	PART
arestyrurj-175	69	85	convert	convert	VERB
arestyrurj-175	69	86	the	the	DET
arestyrurj-175	69	87	alignment	alignment	NOUN
arestyrurj-175	69	88	bam	bam	NOUN
arestyrurj-175	69	89	files	file	NOUN
arestyrurj-175	69	90	to	to	PART
arestyrurj-175	69	91	bed	bed	NOUN
arestyrurj-175	69	92	files	file	NOUN
arestyrurj-175	69	93	so	so	SCONJ
arestyrurj-175	69	94	that	that	SCONJ
arestyrurj-175	69	95	macs	mac	NOUN
arestyrurj-175	69	96	would	would	AUX
arestyrurj-175	69	97	properly	properly	ADV
arestyrurj-175	69	98	interpret	interpret	VERB
arestyrurj-175	69	99	the	the	DET
arestyrurj-175	69	100	nonoverlapping	nonoverlapping	NOUN
arestyrurj-175	69	101	forward	forward	ADV
arestyrurj-175	69	102	and	and	CCONJ
arestyrurj-175	69	103	reverse	reverse	ADJ
arestyrurj-175	69	104	peaks	peak	NOUN
arestyrurj-175	69	105	typical	typical	ADJ
arestyrurj-175	69	106	of	of	ADP
arestyrurj-175	69	107	atac	atac	NOUN
arestyrurj-175	69	108	-	-	PUNCT
arestyrurj-175	69	109	seq	seq	NOUN
arestyrurj-175	69	110	but	but	CCONJ
arestyrurj-175	69	111	not	not	PART
arestyrurj-175	69	112	of	of	ADP
arestyrurj-175	69	113	chip	chip	NOUN
arestyrurj-175	69	114	-	-	PUNCT
arestyrurj-175	69	115	seq	seq	NOUN
arestyrurj-175	69	116	.	.	PUNCT
arestyrurj-175	70	1	macs	macs	PROPN
arestyrurj-175	70	2	was	be	AUX
arestyrurj-175	70	3	run	run	VERB
arestyrurj-175	70	4	with	with	ADP
arestyrurj-175	70	5	a	a	DET
arestyrurj-175	70	6	shift	shift	NOUN
arestyrurj-175	70	7	distance	distance	NOUN
arestyrurj-175	70	8	of	of	ADP
arestyrurj-175	70	9	negative	negative	ADJ
arestyrurj-175	70	10	one	one	NUM
arestyrurj-175	70	11	-	-	PUNCT
arestyrurj-175	70	12	half	half	DET
arestyrurj-175	70	13	the	the	DET
arestyrurj-175	70	14	median	median	ADJ
arestyrurj-175	70	15	alignment	alignment	NOUN
arestyrurj-175	70	16	size	size	NOUN
arestyrurj-175	70	17	and	and	CCONJ
arestyrurj-175	70	18	an	an	DET
arestyrurj-175	70	19	extsize	extsize	NOUN
arestyrurj-175	70	20	distance	distance	NOUN
arestyrurj-175	70	21	equal	equal	ADJ
arestyrurj-175	70	22	to	to	ADP
arestyrurj-175	70	23	the	the	DET
arestyrurj-175	70	24	median	median	ADJ
arestyrurj-175	70	25	alignment	alignment	NOUN
arestyrurj-175	70	26	size	size	NOUN
arestyrurj-175	70	27	for	for	ADP
arestyrurj-175	70	28	each	each	DET
arestyrurj-175	70	29	alignment	alignment	ADJ
arestyrurj-175	70	30	bed	bed	NOUN
arestyrurj-175	70	31	file	file	NOUN
arestyrurj-175	70	32	.	.	PUNCT
arestyrurj-175	71	1	for	for	ADP
arestyrurj-175	71	2	each	each	DET
arestyrurj-175	71	3	cell	cell	NOUN
arestyrurj-175	71	4	type	type	NOUN
arestyrurj-175	71	5	composite	composite	NOUN
arestyrurj-175	71	6	,	,	PUNCT
arestyrurj-175	71	7	the	the	DET
arestyrurj-175	71	8	atac	atac	NOUN
arestyrurj-175	71	9	-	-	PUNCT
arestyrurj-175	71	10	seq	seq	NOUN
arestyrurj-175	71	11	signal	signal	NOUN
arestyrurj-175	71	12	was	be	AUX
arestyrurj-175	71	13	plotted	plot	VERB
arestyrurj-175	71	14	versus	versus	ADP
arestyrurj-175	71	15	distance	distance	NOUN
arestyrurj-175	71	16	from	from	ADP
arestyrurj-175	71	17	the	the	DET
arestyrurj-175	71	18	nearest	near	ADJ
arestyrurj-175	71	19	atac	atac	ADJ
arestyrurj-175	71	20	-	-	PUNCT
arestyrurj-175	71	21	seq	seq	NOUN
arestyrurj-175	71	22	peak	peak	NOUN
arestyrurj-175	71	23	using	use	VERB
arestyrurj-175	71	24	the	the	DET
arestyrurj-175	71	25	siteprobw	siteprobw	NOUN
arestyrurj-175	71	26	program	program	NOUN
arestyrurj-175	71	27	included	include	VERB
arestyrurj-175	71	28	in	in	ADP
arestyrurj-175	71	29	the	the	DET
arestyrurj-175	71	30	cistrome	cistrome	PROPN
arestyrurj-175	71	31	suite.[14	suite.[14	PROPN
arestyrurj-175	71	32	]	]	PUNCT
arestyrurj-175	71	33	differential	differential	NOUN
arestyrurj-175	71	34	binding	bind	VERB
arestyrurj-175	71	35	analysis	analysis	NOUN
arestyrurj-175	71	36	peaks	peak	NOUN
arestyrurj-175	71	37	exhibiting	exhibit	VERB
arestyrurj-175	71	38	differential	differential	ADJ
arestyrurj-175	71	39	vdr	vdr	NOUN
arestyrurj-175	71	40	-	-	PUNCT
arestyrurj-175	71	41	binding	bind	VERB
arestyrurj-175	71	42	affinities	affinity	NOUN
arestyrurj-175	71	43	between	between	ADP
arestyrurj-175	71	44	cell	cell	NOUN
arestyrurj-175	71	45	types	type	NOUN
arestyrurj-175	71	46	were	be	AUX
arestyrurj-175	71	47	identified	identify	VERB
arestyrurj-175	71	48	using	use	VERB
arestyrurj-175	71	49	diffbind.[19	diffbind.[19	NOUN
arestyrurj-175	71	50	]	]	PUNCT
arestyrurj-175	71	51	the	the	DET
arestyrurj-175	71	52	following	follow	VERB
arestyrurj-175	71	53	contrasts	contrast	NOUN
arestyrurj-175	71	54	were	be	AUX
arestyrurj-175	71	55	examined	examine	VERB
arestyrurj-175	71	56	:	:	PUNCT
arestyrurj-175	71	57	colonic	colonic	ADJ
arestyrurj-175	71	58	epithelium	epithelium	NOUN
arestyrurj-175	71	59	versus	versus	ADP
arestyrurj-175	71	60	duodenal	duodenal	ADJ
arestyrurj-175	71	61	crypts	crypt	NOUN
arestyrurj-175	71	62	,	,	PUNCT
arestyrurj-175	71	63	colonic	colonic	ADJ
arestyrurj-175	71	64	epithelium	epithelium	NOUN
arestyrurj-175	71	65	versus	versus	ADP
arestyrurj-175	71	66	duodenal	duodenal	ADJ
arestyrurj-175	71	67	villi	villi	NOUN
arestyrurj-175	71	68	,	,	PUNCT
arestyrurj-175	71	69	and	and	CCONJ
arestyrurj-175	71	70	duodenal	duodenal	ADJ
arestyrurj-175	71	71	crypts	crypt	NOUN
arestyrurj-175	71	72	versus	versus	ADP
arestyrurj-175	71	73	duodenal	duodenal	ADJ
arestyrurj-175	71	74	villi	villi	NOUN
arestyrurj-175	71	75	.	.	PUNCT
arestyrurj-175	72	1	each	each	DET
arestyrurj-175	72	2	set	set	NOUN
arestyrurj-175	72	3	of	of	ADP
arestyrurj-175	72	4	differentially	differentially	ADV
arestyrurj-175	72	5	bound	bind	VERB
arestyrurj-175	72	6	peaks	peak	NOUN
arestyrurj-175	72	7	was	be	AUX
arestyrurj-175	72	8	filtered	filter	VERB
arestyrurj-175	72	9	to	to	PART
arestyrurj-175	72	10	only	only	ADV
arestyrurj-175	72	11	include	include	VERB
arestyrurj-175	72	12	peaks	peak	NOUN
arestyrurj-175	72	13	assigned	assign	VERB
arestyrurj-175	72	14	a	a	DET
arestyrurj-175	72	15	significance	significance	NOUN
arestyrurj-175	72	16	value	value	NOUN
arestyrurj-175	72	17	less	less	ADJ
arestyrurj-175	72	18	than	than	ADP
arestyrurj-175	72	19	0.001	0.001	NUM
arestyrurj-175	72	20	by	by	ADP
arestyrurj-175	72	21	diffbind	diffbind	NOUN
arestyrurj-175	72	22	.	.	PUNCT
arestyrurj-175	73	1	each	each	DET
arestyrurj-175	73	2	filtered	filter	VERB
arestyrurj-175	73	3	peak	peak	NOUN
arestyrurj-175	73	4	set	set	NOUN
arestyrurj-175	73	5	was	be	AUX
arestyrurj-175	73	6	exported	export	VERB
arestyrurj-175	73	7	to	to	ADP
arestyrurj-175	73	8	a	a	DET
arestyrurj-175	73	9	bed	bed	NOUN
arestyrurj-175	73	10	file	file	NOUN
arestyrurj-175	73	11	.	.	PUNCT
arestyrurj-175	74	1	for	for	ADP
arestyrurj-175	74	2	each	each	DET
arestyrurj-175	74	3	contrast	contrast	NOUN
arestyrurj-175	74	4	,	,	PUNCT
arestyrurj-175	74	5	the	the	DET
arestyrurj-175	74	6	vdr	vdr	NOUN
arestyrurj-175	74	7	chip	chip	NOUN
arestyrurj-175	74	8	-	-	PUNCT
arestyrurj-175	74	9	seq	seq	NOUN
arestyrurj-175	74	10	signals	signal	NOUN
arestyrurj-175	74	11	of	of	ADP
arestyrurj-175	74	12	each	each	DET
arestyrurj-175	74	13	contrasted	contrast	VERB
arestyrurj-175	74	14	cell	cell	NOUN
arestyrurj-175	74	15	type	type	NOUN
arestyrurj-175	74	16	were	be	AUX
arestyrurj-175	74	17	plotted	plot	VERB
arestyrurj-175	74	18	versus	versus	SCONJ
arestyrurj-175	74	19	the	the	DET
arestyrurj-175	74	20	enriched	enrich	VERB
arestyrurj-175	74	21	vdr	vdr	NOUN
arestyrurj-175	74	22	chip	chip	NOUN
arestyrurj-175	74	23	-	-	PUNCT
arestyrurj-175	74	24	seq	seq	NOUN
arestyrurj-175	74	25	peak	peak	NOUN
arestyrurj-175	74	26	sets	set	NOUN
arestyrurj-175	74	27	for	for	ADP
arestyrurj-175	74	28	each	each	DET
arestyrurj-175	74	29	contrasted	contrast	VERB
arestyrurj-175	74	30	cell	cell	NOUN
arestyrurj-175	74	31	type	type	NOUN
arestyrurj-175	74	32	using	use	VERB
arestyrurj-175	74	33	the	the	DET
arestyrurj-175	74	34	siteprobw	siteprobw	NOUN
arestyrurj-175	74	35	program	program	NOUN
arestyrurj-175	74	36	included	include	VERB
arestyrurj-175	74	37	in	in	ADP
arestyrurj-175	74	38	the	the	DET
arestyrurj-175	74	39	cistrome	cistrome	NOUN
arestyrurj-175	74	40	suite.[14	suite.[14	PROPN
arestyrurj-175	74	41	]	]	PUNCT
arestyrurj-175	74	42	motif	motif	NOUN
arestyrurj-175	74	43	analysis	analysis	NOUN
arestyrurj-175	74	44	transcription	transcription	NOUN
arestyrurj-175	74	45	factor	factor	NOUN
arestyrurj-175	74	46	motifs	motif	NOUN
arestyrurj-175	74	47	were	be	AUX
arestyrurj-175	74	48	identified	identify	VERB
arestyrurj-175	74	49	from	from	ADP
arestyrurj-175	74	50	the	the	DET
arestyrurj-175	74	51	composite	composite	ADJ
arestyrurj-175	74	52	vdr	vdr	NOUN
arestyrurj-175	74	53	chip	chip	NOUN
arestyrurj-175	74	54	-	-	PUNCT
arestyrurj-175	74	55	seq	seq	NOUN
arestyrurj-175	74	56	peak	peak	NOUN
arestyrurj-175	74	57	set	set	VERB
arestyrurj-175	74	58	bed	bed	NOUN
arestyrurj-175	74	59	files	file	NOUN
arestyrurj-175	74	60	of	of	ADP
arestyrurj-175	74	61	each	each	DET
arestyrurj-175	74	62	cell	cell	NOUN
arestyrurj-175	74	63	type	type	NOUN
arestyrurj-175	74	64	using	use	VERB
arestyrurj-175	74	65	homer	homer	NOUN
arestyrurj-175	74	66	.	.	PUNCT
arestyrurj-175	75	1	due	due	ADP
arestyrurj-175	75	2	to	to	ADP
arestyrurj-175	75	3	limited	limited	ADJ
arestyrurj-175	75	4	computational	computational	ADJ
arestyrurj-175	75	5	resources	resource	NOUN
arestyrurj-175	75	6	,	,	PUNCT
arestyrurj-175	75	7	the	the	DET
arestyrurj-175	75	8	size	size	NOUN
arestyrurj-175	75	9	of	of	ADP
arestyrurj-175	75	10	each	each	DET
arestyrurj-175	75	11	composite	composite	ADJ
arestyrurj-175	75	12	peak	peak	NOUN
arestyrurj-175	75	13	set	set	NOUN
arestyrurj-175	75	14	was	be	AUX
arestyrurj-175	75	15	reduced	reduce	VERB
arestyrurj-175	75	16	by	by	ADP
arestyrurj-175	75	17	random	random	ADJ
arestyrurj-175	75	18	sampling	sampling	NOUN
arestyrurj-175	75	19	.	.	PUNCT
arestyrurj-175	76	1	sample	sample	NOUN
arestyrurj-175	76	2	peak	peak	NOUN
arestyrurj-175	76	3	set	set	VERB
arestyrurj-175	76	4	bed	bed	NOUN
arestyrurj-175	76	5	files	file	NOUN
arestyrurj-175	76	6	were	be	AUX
arestyrurj-175	76	7	generated	generate	VERB
arestyrurj-175	76	8	by	by	ADP
arestyrurj-175	76	9	randomly	randomly	ADV
arestyrurj-175	76	10	selecting	select	VERB
arestyrurj-175	76	11	one	one	NUM
arestyrurj-175	76	12	-	-	PUNCT
arestyrurj-175	76	13	fifth	fifth	NOUN
arestyrurj-175	76	14	of	of	ADP
arestyrurj-175	76	15	the	the	DET
arestyrurj-175	76	16	peaks	peak	NOUN
arestyrurj-175	76	17	in	in	ADP
arestyrurj-175	76	18	each	each	DET
arestyrurj-175	76	19	composite	composite	ADJ
arestyrurj-175	76	20	peak	peak	NOUN
arestyrurj-175	76	21	set	set	VERB
arestyrurj-175	76	22	bed	bed	NOUN
arestyrurj-175	76	23	file	file	NOUN
arestyrurj-175	76	24	.	.	PUNCT
arestyrurj-175	77	1	homer	homer	NOUN
arestyrurj-175	77	2	was	be	AUX
arestyrurj-175	77	3	used	use	VERB
arestyrurj-175	77	4	to	to	PART
arestyrurj-175	77	5	identify	identify	VERB
arestyrurj-175	77	6	motifs	motif	NOUN
arestyrurj-175	77	7	enriched	enrich	VERB
arestyrurj-175	77	8	in	in	ADP
arestyrurj-175	77	9	each	each	DET
arestyrurj-175	77	10	sample	sample	NOUN
arestyrurj-175	77	11	peak	peak	NOUN
arestyrurj-175	77	12	set	set	VERB
arestyrurj-175	77	13	bed	bed	NOUN
arestyrurj-175	77	14	file	file	NOUN
arestyrurj-175	77	15	.	.	PUNCT
arestyrurj-175	78	1	transcription	transcription	NOUN
arestyrurj-175	78	2	factor	factor	NOUN
arestyrurj-175	78	3	motifs	motif	NOUN
arestyrurj-175	78	4	were	be	AUX
arestyrurj-175	78	5	also	also	ADV
arestyrurj-175	78	6	identified	identify	VERB
arestyrurj-175	78	7	from	from	ADP
arestyrurj-175	78	8	each	each	DET
arestyrurj-175	78	9	differential	differential	NOUN
arestyrurj-175	78	10	vdr	vdr	NOUN
arestyrurj-175	78	11	chip	chip	NOUN
arestyrurj-175	78	12	-	-	PUNCT
arestyrurj-175	78	13	seq	seq	NOUN
arestyrurj-175	78	14	peak	peak	NOUN
arestyrurj-175	78	15	set	set	VERB
arestyrurj-175	78	16	bed	bed	NOUN
arestyrurj-175	78	17	file	file	NOUN
arestyrurj-175	78	18	using	use	VERB
arestyrurj-175	78	19	homer	homer	NOUN
arestyrurj-175	78	20	.	.	PUNCT
arestyrurj-175	79	1	however	however	ADV
arestyrurj-175	79	2	,	,	PUNCT
arestyrurj-175	79	3	the	the	DET
arestyrurj-175	79	4	smaller	small	ADJ
arestyrurj-175	79	5	size	size	NOUN
arestyrurj-175	79	6	of	of	ADP
arestyrurj-175	79	7	the	the	DET
arestyrurj-175	79	8	differential	differential	ADJ
arestyrurj-175	79	9	peak	peak	NOUN
arestyrurj-175	79	10	sets	set	NOUN
arestyrurj-175	79	11	meant	mean	VERB
arestyrurj-175	79	12	that	that	SCONJ
arestyrurj-175	79	13	sampling	sampling	NOUN
arestyrurj-175	79	14	was	be	AUX
arestyrurj-175	79	15	not	not	PART
arestyrurj-175	79	16	necessary	necessary	ADJ
arestyrurj-175	79	17	;	;	PUNCT
arestyrurj-175	79	18	the	the	DET
arestyrurj-175	79	19	entirety	entirety	NOUN
arestyrurj-175	79	20	of	of	ADP
arestyrurj-175	79	21	each	each	DET
arestyrurj-175	79	22	differential	differential	ADJ
arestyrurj-175	79	23	peak	peak	NOUN
arestyrurj-175	79	24	set	set	VERB
arestyrurj-175	79	25	bed	bed	NOUN
arestyrurj-175	79	26	file	file	NOUN
arestyrurj-175	79	27	was	be	AUX
arestyrurj-175	79	28	analyzed	analyze	VERB
arestyrurj-175	79	29	using	use	VERB
arestyrurj-175	79	30	homer	homer	NOUN
arestyrurj-175	79	31	.	.	PUNCT
arestyrurj-175	80	1	3	3	NUM
arestyrurj-175	80	2	results	result	VERB
arestyrurj-175	80	3	genome	genome	NOUN
arestyrurj-175	80	4	alignment	alignment	NOUN
arestyrurj-175	80	5	all	all	PRON
arestyrurj-175	80	6	of	of	ADP
arestyrurj-175	80	7	the	the	DET
arestyrurj-175	80	8	vdr	vdr	NOUN
arestyrurj-175	80	9	chip	chip	NOUN
arestyrurj-175	80	10	-	-	PUNCT
arestyrurj-175	80	11	seq	seq	NOUN
arestyrurj-175	80	12	read	read	VERB
arestyrurj-175	80	13	fastq	fastq	ADJ
arestyrurj-175	80	14	files	file	NOUN
arestyrurj-175	80	15	were	be	AUX
arestyrurj-175	80	16	successfully	successfully	ADV
arestyrurj-175	80	17	aligned	align	VERB
arestyrurj-175	80	18	to	to	PART
arestyrurj-175	80	19	mouse	mouse	VERB
arestyrurj-175	80	20	genome	genome	NOUN
arestyrurj-175	80	21	assembly	assembly	NOUN
arestyrurj-175	80	22	aresty	aresty	ADJ
arestyrurj-175	80	23	rutgers	rutgers	PROPN
arestyrurj-175	80	24	undergraduate	undergraduate	PROPN
arestyrurj-175	80	25	research	research	PROPN
arestyrurj-175	80	26	journal	journal	PROPN
arestyrurj-175	80	27	,	,	PUNCT
arestyrurj-175	80	28	volume	volume	NOUN
arestyrurj-175	80	29	i	i	PRON
arestyrurj-175	80	30	,	,	PUNCT
arestyrurj-175	80	31	issue	issue	VERB
arestyrurj-175	80	32	iii	iii	NUM
arestyrurj-175	80	33	mm9.[15	mm9.[15	NOUN
arestyrurj-175	80	34	]	]	PUNCT
arestyrurj-175	80	35	the	the	DET
arestyrurj-175	80	36	successful	successful	ADJ
arestyrurj-175	80	37	genomic	genomic	ADJ
arestyrurj-175	80	38	alignments	alignment	NOUN
arestyrurj-175	80	39	are	be	AUX
arestyrurj-175	80	40	indicated	indicate	VERB
arestyrurj-175	80	41	by	by	ADP
arestyrurj-175	80	42	the	the	DET
arestyrurj-175	80	43	high	high	ADJ
arestyrurj-175	80	44	alignment	alignment	NOUN
arestyrurj-175	80	45	rates	rate	NOUN
arestyrurj-175	80	46	;	;	PUNCT
arestyrurj-175	80	47	all	all	DET
arestyrurj-175	80	48	samples	sample	NOUN
arestyrurj-175	80	49	exhibited	exhibit	VERB
arestyrurj-175	80	50	alignment	alignment	NOUN
arestyrurj-175	80	51	rates	rate	NOUN
arestyrurj-175	80	52	greater	great	ADJ
arestyrurj-175	80	53	than	than	ADP
arestyrurj-175	80	54	85	85	NUM
arestyrurj-175	80	55	%	%	NOUN
arestyrurj-175	80	56	,	,	PUNCT
arestyrurj-175	80	57	and	and	CCONJ
arestyrurj-175	80	58	all	all	PRON
arestyrurj-175	80	59	but	but	SCONJ
arestyrurj-175	80	60	one	one	NUM
arestyrurj-175	80	61	sample	sample	NOUN
arestyrurj-175	80	62	exhibited	exhibit	VERB
arestyrurj-175	80	63	alignment	alignment	NOUN
arestyrurj-175	80	64	rates	rate	NOUN
arestyrurj-175	80	65	greater	great	ADJ
arestyrurj-175	80	66	than	than	ADP
arestyrurj-175	80	67	90	90	NUM
arestyrurj-175	80	68	%	%	NOUN
arestyrurj-175	80	69	(	(	PUNCT
arestyrurj-175	80	70	table	table	NOUN
arestyrurj-175	80	71	1	1	NUM
arestyrurj-175	80	72	)	)	PUNCT
arestyrurj-175	80	73	.	.	PUNCT
arestyrurj-175	81	1	peak	peak	NOUN
arestyrurj-175	81	2	calling	call	VERB
arestyrurj-175	81	3	the	the	DET
arestyrurj-175	81	4	accuracy	accuracy	NOUN
arestyrurj-175	81	5	of	of	ADP
arestyrurj-175	81	6	vdr	vdr	NOUN
arestyrurj-175	81	7	chip	chip	NOUN
arestyrurj-175	81	8	-	-	PUNCT
arestyrurj-175	81	9	seq	seq	NOUN
arestyrurj-175	81	10	peak	peak	NOUN
arestyrurj-175	81	11	calling	calling	NOUN
arestyrurj-175	81	12	was	be	AUX
arestyrurj-175	81	13	assessed	assess	VERB
arestyrurj-175	81	14	by	by	ADP
arestyrurj-175	81	15	comparing	compare	VERB
arestyrurj-175	81	16	each	each	DET
arestyrurj-175	81	17	cell	cell	NOUN
arestyrurj-175	81	18	type	type	NOUN
arestyrurj-175	81	19	’s	’s	PART
arestyrurj-175	81	20	composite	composite	ADJ
arestyrurj-175	81	21	peak	peak	NOUN
arestyrurj-175	81	22	set	set	VERB
arestyrurj-175	81	23	bed	bed	NOUN
arestyrurj-175	81	24	file	file	NOUN
arestyrurj-175	81	25	to	to	ADP
arestyrurj-175	81	26	its	its	PRON
arestyrurj-175	81	27	composite	composite	ADJ
arestyrurj-175	81	28	track	track	NOUN
arestyrurj-175	81	29	bigwig	bigwig	NOUN
arestyrurj-175	81	30	file	file	NOUN
arestyrurj-175	81	31	.	.	PUNCT
arestyrurj-175	82	1	the	the	DET
arestyrurj-175	82	2	resulting	result	VERB
arestyrurj-175	82	3	signal	signal	NOUN
arestyrurj-175	82	4	plots	plot	NOUN
arestyrurj-175	82	5	indicate	indicate	VERB
arestyrurj-175	82	6	that	that	SCONJ
arestyrurj-175	82	7	all	all	PRON
arestyrurj-175	82	8	of	of	ADP
arestyrurj-175	82	9	the	the	DET
arestyrurj-175	82	10	com	com	NOUN
arestyrurj-175	82	11	posite	posite	NOUN
arestyrurj-175	82	12	peak	peak	NOUN
arestyrurj-175	82	13	sets	set	NOUN
arestyrurj-175	82	14	exhibit	exhibit	VERB
arestyrurj-175	82	15	a	a	DET
arestyrurj-175	82	16	majority	majority	NOUN
arestyrurj-175	82	17	of	of	ADP
arestyrurj-175	82	18	reads	read	NOUN
arestyrurj-175	82	19	near	near	ADP
arestyrurj-175	82	20	the	the	DET
arestyrurj-175	82	21	centers	center	NOUN
arestyrurj-175	82	22	of	of	ADP
arestyrurj-175	82	23	peak	peak	NOUN
arestyrurj-175	82	24	regions	region	NOUN
arestyrurj-175	82	25	(	(	PUNCT
arestyrurj-175	82	26	figure	figure	NOUN
arestyrurj-175	82	27	2	2	NUM
arestyrurj-175	82	28	)	)	PUNCT
arestyrurj-175	82	29	.	.	PUNCT
arestyrurj-175	83	1	thus	thus	ADV
arestyrurj-175	83	2	,	,	PUNCT
arestyrurj-175	83	3	we	we	PRON
arestyrurj-175	83	4	confirm	confirm	VERB
arestyrurj-175	83	5	that	that	SCONJ
arestyrurj-175	83	6	the	the	DET
arestyrurj-175	83	7	vdr	vdr	NOUN
arestyrurj-175	83	8	-	-	PUNCT
arestyrurj-175	83	9	responsive	responsive	ADJ
arestyrurj-175	83	10	elements	element	NOUN
arestyrurj-175	83	11	identified	identify	VERB
arestyrurj-175	83	12	by	by	ADP
arestyrurj-175	83	13	macs	mac	NOUN
arestyrurj-175	83	14	exhibit	exhibit	VERB
arestyrurj-175	83	15	elevated	elevate	VERB
arestyrurj-175	83	16	vdr	vdr	NOUN
arestyrurj-175	83	17	binding	bind	VERB
arestyrurj-175	83	18	,	,	PUNCT
arestyrurj-175	83	19	as	as	SCONJ
arestyrurj-175	83	20	expected	expect	VERB
arestyrurj-175	83	21	of	of	ADP
arestyrurj-175	83	22	responsive	responsive	ADJ
arestyrurj-175	83	23	elements	element	NOUN
arestyrurj-175	83	24	.	.	PUNCT
arestyrurj-175	84	1	differential	differential	ADJ
arestyrurj-175	84	2	binding	bind	VERB
arestyrurj-175	84	3	analysis	analysis	NOUN
arestyrurj-175	84	4	the	the	DET
arestyrurj-175	84	5	correlation	correlation	NOUN
arestyrurj-175	84	6	between	between	ADP
arestyrurj-175	84	7	vdr	vdr	NOUN
arestyrurj-175	84	8	chip	chip	NOUN
arestyrurj-175	84	9	-	-	PUNCT
arestyrurj-175	84	10	seq	seq	NOUN
arestyrurj-175	84	11	peak	peak	NOUN
arestyrurj-175	84	12	sets	set	NOUN
arestyrurj-175	84	13	was	be	AUX
arestyrurj-175	84	14	assessed	assess	VERB
arestyrurj-175	84	15	using	use	VERB
arestyrurj-175	84	16	diffbind.[19	diffbind.[19	NOUN
arestyrurj-175	84	17	]	]	PUNCT
arestyrurj-175	84	18	the	the	DET
arestyrurj-175	84	19	resulting	result	VERB
arestyrurj-175	84	20	correlation	correlation	NOUN
arestyrurj-175	84	21	matrix	matrix	NOUN
arestyrurj-175	84	22	indicates	indicate	VERB
arestyrurj-175	84	23	that	that	SCONJ
arestyrurj-175	84	24	the	the	DET
arestyrurj-175	84	25	colonic	colonic	ADJ
arestyrurj-175	84	26	epithelium	epithelium	NOUN
arestyrurj-175	84	27	peak	peak	NOUN
arestyrurj-175	84	28	sets	set	NOUN
arestyrurj-175	84	29	are	be	AUX
arestyrurj-175	84	30	all	all	ADV
arestyrurj-175	84	31	more	more	ADV
arestyrurj-175	84	32	closely	closely	ADV
arestyrurj-175	84	33	correlated	correlate	VERB
arestyrurj-175	84	34	to	to	ADP
arestyrurj-175	84	35	each	each	DET
arestyrurj-175	84	36	table	table	NOUN
arestyrurj-175	85	1	1	1	NUM
arestyrurj-175	85	2	:	:	PUNCT
arestyrurj-175	85	3	vdr	vdr	VERB
arestyrurj-175	85	4	chip	chip	NOUN
arestyrurj-175	85	5	-	-	PUNCT
arestyrurj-175	85	6	seq	seq	NOUN
arestyrurj-175	85	7	genome	genome	NOUN
arestyrurj-175	85	8	alignment	alignment	NOUN
arestyrurj-175	85	9	metrics	metric	NOUN
arestyrurj-175	85	10	[	[	X
arestyrurj-175	85	11	a	a	X
arestyrurj-175	85	12	]	]	X
arestyrurj-175	85	13	composite	composite	ADJ
arestyrurj-175	85	14	alignment	alignment	NOUN
arestyrurj-175	85	15	bam	bam	NOUN
arestyrurj-175	85	16	files	file	NOUN
arestyrurj-175	85	17	were	be	AUX
arestyrurj-175	85	18	constructed	construct	VERB
arestyrurj-175	85	19	using	use	VERB
arestyrurj-175	85	20	samtools	samtools	PROPN
arestyrurj-175	85	21	merge.[14	merge.[14	PROPN
arestyrurj-175	85	22	]	]	PUNCT
arestyrurj-175	86	1	[	[	X
arestyrurj-175	86	2	b	b	X
arestyrurj-175	86	3	]	]	X
arestyrurj-175	86	4	genome	genome	NOUN
arestyrurj-175	86	5	alignment	alignment	NOUN
arestyrurj-175	86	6	was	be	AUX
arestyrurj-175	86	7	conducted	conduct	VERB
arestyrurj-175	86	8	using	use	VERB
arestyrurj-175	86	9	mouse	mouse	NOUN
arestyrurj-175	86	10	genome	genome	NOUN
arestyrurj-175	86	11	assembly	assembly	NOUN
arestyrurj-175	86	12	mm9	mm9	PROPN
arestyrurj-175	86	13	and	and	CCONJ
arestyrurj-175	86	14	bowtie2.[10,15	bowtie2.[10,15	PROPN
arestyrurj-175	86	15	]	]	PUNCT
arestyrurj-175	87	1	[	[	X
arestyrurj-175	87	2	c	c	X
arestyrurj-175	87	3	]	]	X
arestyrurj-175	87	4	duplicate	duplicate	ADJ
arestyrurj-175	87	5	alignments	alignment	NOUN
arestyrurj-175	87	6	were	be	AUX
arestyrurj-175	87	7	removed	remove	VERB
arestyrurj-175	87	8	using	use	VERB
arestyrurj-175	87	9	macs	mac	NOUN
arestyrurj-175	87	10	filterdup.[22	filterdup.[22	PROPN
arestyrurj-175	87	11	]	]	PUNCT
arestyrurj-175	87	12	aresty	aresty	PROPN
arestyrurj-175	87	13	rutgers	rutgers	PROPN
arestyrurj-175	87	14	undergraduate	undergraduate	PROPN
arestyrurj-175	87	15	research	research	PROPN
arestyrurj-175	87	16	journal	journal	PROPN
arestyrurj-175	87	17	,	,	PUNCT
arestyrurj-175	87	18	volume	volume	NOUN
arestyrurj-175	87	19	i	i	PRON
arestyrurj-175	87	20	,	,	PUNCT
arestyrurj-175	87	21	issue	issue	NOUN
arestyrurj-175	87	22	iii	iii	NUM
arestyrurj-175	87	23	figure	figure	NOUN
arestyrurj-175	87	24	2	2	NUM
arestyrurj-175	87	25	:	:	PUNCT
arestyrurj-175	87	26	vdr	vdr	VERB
arestyrurj-175	87	27	chip	chip	NOUN
arestyrurj-175	87	28	-	-	PUNCT
arestyrurj-175	87	29	seq	seq	NOUN
arestyrurj-175	87	30	signal	signal	NOUN
arestyrurj-175	87	31	versus	versus	ADP
arestyrurj-175	87	32	distance	distance	NOUN
arestyrurj-175	87	33	from	from	ADP
arestyrurj-175	87	34	vdr	vdr	NOUN
arestyrurj-175	87	35	chip	chip	NOUN
arestyrurj-175	87	36	-	-	PUNCT
arestyrurj-175	87	37	seq	seq	NOUN
arestyrurj-175	87	38	peaks	peak	NOUN
arestyrurj-175	87	39	most	most	ADV
arestyrurj-175	87	40	vdr	vdr	VERB
arestyrurj-175	87	41	chip	chip	NOUN
arestyrurj-175	87	42	-	-	PUNCT
arestyrurj-175	87	43	seq	seq	NOUN
arestyrurj-175	87	44	reads	read	NOUN
arestyrurj-175	87	45	are	be	AUX
arestyrurj-175	87	46	located	locate	VERB
arestyrurj-175	87	47	near	near	ADP
arestyrurj-175	87	48	vdr	vdr	NOUN
arestyrurj-175	87	49	chip	chip	NOUN
arestyrurj-175	87	50	-	-	PUNCT
arestyrurj-175	87	51	seq	seq	NOUN
arestyrurj-175	87	52	peaks	peak	NOUN
arestyrurj-175	87	53	.	.	PUNCT
arestyrurj-175	88	1	vdr	vdr	VERB
arestyrurj-175	88	2	chip	chip	NOUN
arestyrurj-175	88	3	-	-	PUNCT
arestyrurj-175	88	4	seq	seq	NOUN
arestyrurj-175	88	5	signal	signal	NOUN
arestyrurj-175	88	6	versus	versus	ADP
arestyrurj-175	88	7	distance	distance	NOUN
arestyrurj-175	88	8	from	from	ADP
arestyrurj-175	88	9	nearest	near	ADJ
arestyrurj-175	88	10	vdr	vdr	NOUN
arestyrurj-175	88	11	chipseq	chipseq	NOUN
arestyrurj-175	88	12	peak	peak	NOUN
arestyrurj-175	88	13	.	.	PUNCT
arestyrurj-175	89	1	figure	figure	NOUN
arestyrurj-175	89	2	generated	generate	VERB
arestyrurj-175	89	3	using	use	VERB
arestyrurj-175	89	4	siteprobw.[14	siteprobw.[14	PROPN
arestyrurj-175	89	5	]	]	PUNCT
arestyrurj-175	89	6	figure	figure	NOUN
arestyrurj-175	89	7	3	3	NUM
arestyrurj-175	89	8	:	:	PUNCT
arestyrurj-175	89	9	vdr	vdr	VERB
arestyrurj-175	89	10	chip	chip	NOUN
arestyrurj-175	89	11	-	-	PUNCT
arestyrurj-175	89	12	seq	seq	NOUN
arestyrurj-175	89	13	differential	differential	NOUN
arestyrurj-175	89	14	binding	bind	VERB
arestyrurj-175	89	15	heatmap	heatmap	NOUN
arestyrurj-175	89	16	the	the	DET
arestyrurj-175	89	17	difference	difference	NOUN
arestyrurj-175	89	18	between	between	ADP
arestyrurj-175	89	19	colonic	colonic	ADJ
arestyrurj-175	89	20	and	and	CCONJ
arestyrurj-175	89	21	duodenal	duodenal	ADJ
arestyrurj-175	89	22	vdr	vdr	NOUN
arestyrurj-175	89	23	chipseq	chipseq	NOUN
arestyrurj-175	89	24	peak	peak	NOUN
arestyrurj-175	89	25	sets	set	NOUN
arestyrurj-175	89	26	is	be	AUX
arestyrurj-175	89	27	greater	great	ADJ
arestyrurj-175	89	28	than	than	ADP
arestyrurj-175	89	29	the	the	DET
arestyrurj-175	89	30	difference	difference	NOUN
arestyrurj-175	89	31	between	between	ADP
arestyrurj-175	89	32	duodenal	duodenal	ADJ
arestyrurj-175	89	33	crypt	crypt	NOUN
arestyrurj-175	89	34	and	and	CCONJ
arestyrurj-175	89	35	duodenal	duodenal	ADJ
arestyrurj-175	89	36	villi	villi	NOUN
arestyrurj-175	89	37	vdr	vdr	NOUN
arestyrurj-175	89	38	chip	chip	NOUN
arestyrurj-175	89	39	-	-	PUNCT
arestyrurj-175	89	40	seq	seq	NOUN
arestyrurj-175	89	41	peak	peak	NOUN
arestyrurj-175	89	42	sets	set	NOUN
arestyrurj-175	89	43	.	.	PUNCT
arestyrurj-175	90	1	darker	dark	ADJ
arestyrurj-175	90	2	shading	shading	NOUN
arestyrurj-175	90	3	in	in	ADP
arestyrurj-175	90	4	the	the	DET
arestyrurj-175	90	5	heatmap	heatmap	NOUN
arestyrurj-175	90	6	represents	represent	VERB
arestyrurj-175	90	7	greater	great	ADJ
arestyrurj-175	90	8	similarity	similarity	NOUN
arestyrurj-175	90	9	between	between	ADP
arestyrurj-175	90	10	peak	peak	NOUN
arestyrurj-175	90	11	sets	set	NOUN
arestyrurj-175	90	12	;	;	PUNCT
arestyrurj-175	90	13	greater	great	ADJ
arestyrurj-175	90	14	vertical	vertical	ADJ
arestyrurj-175	90	15	separation	separation	NOUN
arestyrurj-175	90	16	in	in	ADP
arestyrurj-175	90	17	the	the	DET
arestyrurj-175	90	18	dendrogram	dendrogram	NOUN
arestyrurj-175	90	19	represents	represent	VERB
arestyrurj-175	90	20	greater	great	ADJ
arestyrurj-175	90	21	difference	difference	NOUN
arestyrurj-175	90	22	between	between	ADP
arestyrurj-175	90	23	peak	peak	NOUN
arestyrurj-175	90	24	sets	set	NOUN
arestyrurj-175	90	25	.	.	PUNCT
arestyrurj-175	91	1	figure	figure	NOUN
arestyrurj-175	91	2	generated	generate	VERB
arestyrurj-175	91	3	by	by	ADP
arestyrurj-175	91	4	diffbind.[19	diffbind.[19	PROPN
arestyrurj-175	91	5	]	]	PUNCT
arestyrurj-175	91	6	figure	figure	NOUN
arestyrurj-175	91	7	4	4	NUM
arestyrurj-175	91	8	:	:	PUNCT
arestyrurj-175	91	9	differential	differential	ADJ
arestyrurj-175	91	10	vdr	vdr	NOUN
arestyrurj-175	91	11	chip	chip	NOUN
arestyrurj-175	91	12	-	-	PUNCT
arestyrurj-175	91	13	seq	seq	NOUN
arestyrurj-175	91	14	peak	peak	NOUN
arestyrurj-175	91	15	set	set	NOUN
arestyrurj-175	91	16	sizes	size	NOUN
arestyrurj-175	91	17	the	the	DET
arestyrurj-175	91	18	majority	majority	NOUN
arestyrurj-175	91	19	of	of	ADP
arestyrurj-175	91	20	vdr	vdr	NOUN
arestyrurj-175	91	21	chip	chip	NOUN
arestyrurj-175	91	22	-	-	PUNCT
arestyrurj-175	91	23	seq	seq	NOUN
arestyrurj-175	91	24	peaks	peak	NOUN
arestyrurj-175	91	25	are	be	AUX
arestyrurj-175	91	26	common	common	ADJ
arestyrurj-175	91	27	to	to	ADP
arestyrurj-175	91	28	duodenal	duodenal	ADJ
arestyrurj-175	91	29	villi	villi	NOUN
arestyrurj-175	91	30	,	,	PUNCT
arestyrurj-175	91	31	duodenal	duodenal	ADJ
arestyrurj-175	91	32	crypt	crypt	NOUN
arestyrurj-175	91	33	,	,	PUNCT
arestyrurj-175	91	34	and	and	CCONJ
arestyrurj-175	91	35	colonic	colonic	ADJ
arestyrurj-175	91	36	epithelial	epithelial	ADJ
arestyrurj-175	91	37	cells	cell	NOUN
arestyrurj-175	91	38	.	.	PUNCT
arestyrurj-175	92	1	a	a	DET
arestyrurj-175	92	2	small	small	ADJ
arestyrurj-175	92	3	minority	minority	NOUN
arestyrurj-175	92	4	of	of	ADP
arestyrurj-175	92	5	vdr	vdr	NOUN
arestyrurj-175	92	6	chip	chip	NOUN
arestyrurj-175	92	7	-	-	PUNCT
arestyrurj-175	92	8	seq	seq	NOUN
arestyrurj-175	92	9	peaks	peak	NOUN
arestyrurj-175	92	10	differ	differ	VERB
arestyrurj-175	92	11	between	between	ADP
arestyrurj-175	92	12	duodenal	duodenal	ADJ
arestyrurj-175	92	13	epithelial	epithelial	ADJ
arestyrurj-175	92	14	and	and	CCONJ
arestyrurj-175	92	15	colonic	colonic	ADJ
arestyrurj-175	92	16	epithelial	epithelial	ADJ
arestyrurj-175	92	17	cells	cell	NOUN
arestyrurj-175	92	18	.	.	PUNCT
arestyrurj-175	93	1	aresty	aresty	ADJ
arestyrurj-175	93	2	rutgers	rutgers	PROPN
arestyrurj-175	93	3	undergraduate	undergraduate	PROPN
arestyrurj-175	93	4	research	research	PROPN
arestyrurj-175	93	5	journal	journal	PROPN
arestyrurj-175	93	6	,	,	PUNCT
arestyrurj-175	93	7	volume	volume	NOUN
arestyrurj-175	93	8	i	i	PRON
arestyrurj-175	93	9	,	,	PUNCT
arestyrurj-175	93	10	issue	issue	VERB
arestyrurj-175	93	11	iii	iii	NOUN
arestyrurj-175	93	12	other	other	ADJ
arestyrurj-175	93	13	than	than	ADP
arestyrurj-175	93	14	to	to	ADP
arestyrurj-175	93	15	any	any	PRON
arestyrurj-175	93	16	of	of	ADP
arestyrurj-175	93	17	the	the	DET
arestyrurj-175	93	18	duodenal	duodenal	ADJ
arestyrurj-175	93	19	crypt	crypt	NOUN
arestyrurj-175	93	20	or	or	CCONJ
arestyrurj-175	93	21	duodenal	duodenal	ADJ
arestyrurj-175	93	22	villi	villi	NOUN
arestyrurj-175	93	23	peak	peak	NOUN
arestyrurj-175	93	24	sets	set	NOUN
arestyrurj-175	93	25	(	(	PUNCT
arestyrurj-175	93	26	figure	figure	NOUN
arestyrurj-175	93	27	3	3	NUM
arestyrurj-175	93	28	)	)	PUNCT
arestyrurj-175	93	29	.	.	PUNCT
arestyrurj-175	94	1	the	the	DET
arestyrurj-175	94	2	correlation	correlation	NOUN
arestyrurj-175	94	3	matrix	matrix	NOUN
arestyrurj-175	94	4	also	also	ADV
arestyrurj-175	94	5	indicates	indicate	VERB
arestyrurj-175	94	6	that	that	SCONJ
arestyrurj-175	94	7	the	the	DET
arestyrurj-175	94	8	duodenal	duodenal	ADJ
arestyrurj-175	94	9	crypt	crypt	NOUN
arestyrurj-175	94	10	and	and	CCONJ
arestyrurj-175	94	11	duodenal	duodenal	ADJ
arestyrurj-175	94	12	villi	villi	NOUN
arestyrurj-175	94	13	peak	peak	NOUN
arestyrurj-175	94	14	sets	set	NOUN
arestyrurj-175	94	15	do	do	AUX
arestyrurj-175	94	16	not	not	PART
arestyrurj-175	94	17	differ	differ	VERB
arestyrurj-175	94	18	significantly	significantly	ADV
arestyrurj-175	94	19	.	.	PUNCT
arestyrurj-175	95	1	the	the	DET
arestyrurj-175	95	2	majority	majority	NOUN
arestyrurj-175	95	3	of	of	ADP
arestyrurj-175	95	4	vdr	vdr	NOUN
arestyrurj-175	95	5	chip	chip	NOUN
arestyrurj-175	95	6	-	-	PUNCT
arestyrurj-175	95	7	seq	seq	NOUN
arestyrurj-175	95	8	peaks	peak	NOUN
arestyrurj-175	95	9	are	be	AUX
arestyrurj-175	95	10	common	common	ADJ
arestyrurj-175	95	11	to	to	ADP
arestyrurj-175	95	12	all	all	DET
arestyrurj-175	95	13	three	three	NUM
arestyrurj-175	95	14	cell	cell	NOUN
arestyrurj-175	95	15	types	type	NOUN
arestyrurj-175	95	16	.	.	PUNCT
arestyrurj-175	96	1	out	out	ADP
arestyrurj-175	96	2	of	of	ADP
arestyrurj-175	96	3	the	the	DET
arestyrurj-175	96	4	23,381	23,381	NUM
arestyrurj-175	96	5	vdr	vdr	NOUN
arestyrurj-175	96	6	-	-	PUNCT
arestyrurj-175	96	7	binding	bind	VERB
arestyrurj-175	96	8	sites	site	NOUN
arestyrurj-175	96	9	exhibited	exhibit	VERB
arestyrurj-175	96	10	in	in	ADP
arestyrurj-175	96	11	either	either	CCONJ
arestyrurj-175	96	12	colonic	colonic	ADJ
arestyrurj-175	96	13	epithelial	epithelial	ADJ
arestyrurj-175	96	14	or	or	CCONJ
arestyrurj-175	96	15	duodenal	duodenal	ADJ
arestyrurj-175	96	16	villi	villi	NOUN
arestyrurj-175	96	17	cells	cell	NOUN
arestyrurj-175	96	18	,	,	PUNCT
arestyrurj-175	96	19	only	only	ADV
arestyrurj-175	96	20	1,741	1,741	NUM
arestyrurj-175	96	21	sites	site	NOUN
arestyrurj-175	96	22	differ	differ	AUX
arestyrurj-175	96	23	be	be	AUX
arestyrurj-175	96	24	figure	figure	NOUN
arestyrurj-175	96	25	5	5	NUM
arestyrurj-175	96	26	:	:	PUNCT
arestyrurj-175	96	27	vdr	vdr	VERB
arestyrurj-175	96	28	chip	chip	NOUN
arestyrurj-175	96	29	-	-	PUNCT
arestyrurj-175	96	30	seq	seq	NOUN
arestyrurj-175	96	31	signal	signal	NOUN
arestyrurj-175	96	32	versus	versus	ADP
arestyrurj-175	96	33	distance	distance	NOUN
arestyrurj-175	96	34	from	from	ADP
arestyrurj-175	96	35	differential	differential	ADJ
arestyrurj-175	96	36	vdr	vdr	NOUN
arestyrurj-175	96	37	chip	chip	NOUN
arestyrurj-175	96	38	-	-	PUNCT
arestyrurj-175	96	39	seq	seq	NOUN
arestyrurj-175	96	40	peaks	peak	NOUN
arestyrurj-175	96	41	differential	differential	VERB
arestyrurj-175	96	42	vdr	vdr	NOUN
arestyrurj-175	96	43	chip	chip	NOUN
arestyrurj-175	96	44	-	-	PUNCT
arestyrurj-175	96	45	seq	seq	NOUN
arestyrurj-175	96	46	peaks	peak	NOUN
arestyrurj-175	96	47	exhibit	exhibit	VERB
arestyrurj-175	96	48	greater	great	ADJ
arestyrurj-175	96	49	vdr	vdr	NOUN
arestyrurj-175	96	50	binding	bind	VERB
arestyrurj-175	96	51	in	in	ADP
arestyrurj-175	96	52	the	the	DET
arestyrurj-175	96	53	tissue	tissue	NOUN
arestyrurj-175	96	54	of	of	ADP
arestyrurj-175	96	55	their	their	PRON
arestyrurj-175	96	56	enrichment	enrichment	NOUN
arestyrurj-175	96	57	.	.	PUNCT
arestyrurj-175	97	1	vdr	vdr	VERB
arestyrurj-175	97	2	chip	chip	NOUN
arestyrurj-175	97	3	-	-	PUNCT
arestyrurj-175	97	4	seq	seq	NOUN
arestyrurj-175	97	5	signal	signal	NOUN
arestyrurj-175	97	6	versus	versus	ADP
arestyrurj-175	97	7	distance	distance	NOUN
arestyrurj-175	97	8	from	from	ADP
arestyrurj-175	97	9	nearest	near	ADJ
arestyrurj-175	97	10	differential	differential	ADJ
arestyrurj-175	97	11	vdr	vdr	NOUN
arestyrurj-175	97	12	chip	chip	NOUN
arestyrurj-175	97	13	-	-	PUNCT
arestyrurj-175	97	14	seq	seq	NOUN
arestyrurj-175	97	15	peak	peak	NOUN
arestyrurj-175	97	16	.	.	PUNCT
arestyrurj-175	98	1	figure	figure	NOUN
arestyrurj-175	98	2	generated	generate	VERB
arestyrurj-175	98	3	by	by	ADP
arestyrurj-175	98	4	siteprobw.[14	siteprobw.[14	PROPN
arestyrurj-175	98	5	]	]	PUNCT
arestyrurj-175	98	6	figure	figure	NOUN
arestyrurj-175	98	7	6	6	NUM
arestyrurj-175	98	8	:	:	PUNCT
arestyrurj-175	98	9	atac	atac	ADJ
arestyrurj-175	98	10	-	-	PUNCT
arestyrurj-175	98	11	seq	seq	NOUN
arestyrurj-175	98	12	signal	signal	NOUN
arestyrurj-175	98	13	versus	versus	ADP
arestyrurj-175	98	14	distance	distance	NOUN
arestyrurj-175	98	15	from	from	ADP
arestyrurj-175	98	16	differential	differential	ADJ
arestyrurj-175	98	17	vdr	vdr	NOUN
arestyrurj-175	98	18	chip	chip	NOUN
arestyrurj-175	98	19	-	-	PUNCT
arestyrurj-175	98	20	seq	seq	NOUN
arestyrurj-175	98	21	peaks	peak	NOUN
arestyrurj-175	98	22	differential	differential	VERB
arestyrurj-175	98	23	vdr	vdr	NOUN
arestyrurj-175	98	24	chip	chip	NOUN
arestyrurj-175	98	25	-	-	PUNCT
arestyrurj-175	98	26	seq	seq	NOUN
arestyrurj-175	98	27	peaks	peak	NOUN
arestyrurj-175	98	28	exhibit	exhibit	VERB
arestyrurj-175	98	29	greater	great	ADJ
arestyrurj-175	98	30	chromatin	chromatin	NOUN
arestyrurj-175	98	31	accessibility	accessibility	NOUN
arestyrurj-175	98	32	in	in	ADP
arestyrurj-175	98	33	the	the	DET
arestyrurj-175	98	34	tissue	tissue	NOUN
arestyrurj-175	98	35	of	of	ADP
arestyrurj-175	98	36	their	their	PRON
arestyrurj-175	98	37	enrichment	enrichment	NOUN
arestyrurj-175	98	38	.	.	PUNCT
arestyrurj-175	99	1	atac	atac	NOUN
arestyrurj-175	99	2	-	-	PUNCT
arestyrurj-175	99	3	seq	seq	NOUN
arestyrurj-175	99	4	signal	signal	NOUN
arestyrurj-175	99	5	versus	versus	ADP
arestyrurj-175	99	6	distance	distance	NOUN
arestyrurj-175	99	7	from	from	ADP
arestyrurj-175	99	8	nearest	near	ADJ
arestyrurj-175	99	9	differential	differential	ADJ
arestyrurj-175	99	10	vdr	vdr	NOUN
arestyrurj-175	99	11	chip	chip	NOUN
arestyrurj-175	99	12	-	-	PUNCT
arestyrurj-175	99	13	seq	seq	NOUN
arestyrurj-175	99	14	peak	peak	NOUN
arestyrurj-175	99	15	.	.	PUNCT
arestyrurj-175	100	1	figure	figure	NOUN
arestyrurj-175	100	2	generated	generate	VERB
arestyrurj-175	100	3	by	by	ADP
arestyrurj-175	100	4	siteprobw.[14	siteprobw.[14	PROPN
arestyrurj-175	100	5	]	]	PUNCT
arestyrurj-175	100	6	aresty	aresty	PROPN
arestyrurj-175	100	7	rutgers	rutgers	PROPN
arestyrurj-175	100	8	undergraduate	undergraduate	PROPN
arestyrurj-175	100	9	research	research	PROPN
arestyrurj-175	100	10	journal	journal	PROPN
arestyrurj-175	100	11	,	,	PUNCT
arestyrurj-175	100	12	volume	volume	NOUN
arestyrurj-175	100	13	i	i	PRON
arestyrurj-175	100	14	,	,	PUNCT
arestyrurj-175	100	15	issue	issue	NOUN
arestyrurj-175	100	16	iii	iii	NUM
arestyrurj-175	100	17	table	table	NOUN
arestyrurj-175	100	18	2	2	NUM
arestyrurj-175	100	19	:	:	PUNCT
arestyrurj-175	100	20	vdr	vdr	VERB
arestyrurj-175	100	21	chip	chip	NOUN
arestyrurj-175	100	22	-	-	PUNCT
arestyrurj-175	100	23	seq	seq	NOUN
arestyrurj-175	100	24	peak	peak	NOUN
arestyrurj-175	100	25	calling	call	VERB
arestyrurj-175	100	26	metrics	metric	NOUN
arestyrurj-175	100	27	[	[	X
arestyrurj-175	100	28	a	a	X
arestyrurj-175	100	29	]	]	X
arestyrurj-175	100	30	composite	composite	ADJ
arestyrurj-175	100	31	alignment	alignment	NOUN
arestyrurj-175	100	32	bam	bam	NOUN
arestyrurj-175	100	33	files	file	NOUN
arestyrurj-175	100	34	were	be	AUX
arestyrurj-175	100	35	constructed	construct	VERB
arestyrurj-175	100	36	using	use	VERB
arestyrurj-175	100	37	samtools	samtools	PROPN
arestyrurj-175	100	38	merge.[14	merge.[14	PROPN
arestyrurj-175	100	39	]	]	PUNCT
arestyrurj-175	101	1	[	[	X
arestyrurj-175	101	2	b	b	X
arestyrurj-175	101	3	]	]	X
arestyrurj-175	101	4	peak	peak	NOUN
arestyrurj-175	101	5	calling	calling	NOUN
arestyrurj-175	101	6	was	be	AUX
arestyrurj-175	101	7	conducted	conduct	VERB
arestyrurj-175	101	8	using	use	VERB
arestyrurj-175	101	9	macs.[22	macs.[22	NOUN
arestyrurj-175	101	10	]	]	PUNCT
arestyrurj-175	102	1	[	[	X
arestyrurj-175	102	2	c	c	X
arestyrurj-175	102	3	]	]	X
arestyrurj-175	102	4	peaks	peak	NOUN
arestyrurj-175	102	5	included	include	VERB
arestyrurj-175	102	6	in	in	ADP
arestyrurj-175	102	7	the	the	DET
arestyrurj-175	102	8	encode	encode	ADJ
arestyrurj-175	102	9	mm9	mm9	PROPN
arestyrurj-175	102	10	blacklist	blacklist	NOUN
arestyrurj-175	102	11	were	be	AUX
arestyrurj-175	102	12	removed.[1	removed.[1	VERB
arestyrurj-175	102	13	]	]	PUNCT
arestyrurj-175	102	14	table	table	NOUN
arestyrurj-175	102	15	3	3	NUM
arestyrurj-175	102	16	:	:	PUNCT
arestyrurj-175	102	17	differential	differential	ADJ
arestyrurj-175	102	18	vdr	vdr	NOUN
arestyrurj-175	102	19	chip	chip	NOUN
arestyrurj-175	102	20	-	-	PUNCT
arestyrurj-175	102	21	seq	seq	NOUN
arestyrurj-175	102	22	peak	peak	NOUN
arestyrurj-175	102	23	set	set	VERB
arestyrurj-175	102	24	metrics	metric	NOUN
arestyrurj-175	102	25	[	[	X
arestyrurj-175	102	26	a	a	X
arestyrurj-175	102	27	]	]	X
arestyrurj-175	102	28	enriched	enriched	ADJ
arestyrurj-175	102	29	peaks	peak	NOUN
arestyrurj-175	102	30	were	be	AUX
arestyrurj-175	102	31	determined	determine	VERB
arestyrurj-175	102	32	using	use	VERB
arestyrurj-175	102	33	diffbind	diffbind	NOUN
arestyrurj-175	102	34	.	.	PUNCT
arestyrurj-175	103	1	[	[	X
arestyrurj-175	103	2	19	19	NUM
arestyrurj-175	103	3	]	]	X
arestyrurj-175	103	4	[	[	X
arestyrurj-175	103	5	b	b	X
arestyrurj-175	103	6	]	]	X
arestyrurj-175	103	7	𝑝𝑝	𝑝𝑝	NOUN
arestyrurj-175	103	8	<	<	X
arestyrurj-175	103	9	0.001	0.001	NUM
arestyrurj-175	103	10	aresty	aresty	ADJ
arestyrurj-175	103	11	rutgers	rutgers	PROPN
arestyrurj-175	103	12	undergraduate	undergraduate	PROPN
arestyrurj-175	103	13	research	research	PROPN
arestyrurj-175	103	14	journal	journal	PROPN
arestyrurj-175	103	15	,	,	PUNCT
arestyrurj-175	103	16	volume	volume	NOUN
arestyrurj-175	103	17	i	i	PRON
arestyrurj-175	103	18	,	,	PUNCT
arestyrurj-175	103	19	issue	issue	NOUN
arestyrurj-175	103	20	iii	iii	NUM
arestyrurj-175	103	21	tween	tween	NOUN
arestyrurj-175	103	22	the	the	DET
arestyrurj-175	103	23	two	two	NUM
arestyrurj-175	103	24	cell	cell	NOUN
arestyrurj-175	103	25	types	type	NOUN
arestyrurj-175	103	26	(	(	PUNCT
arestyrurj-175	103	27	table	table	NOUN
arestyrurj-175	103	28	3	3	NUM
arestyrurj-175	103	29	)	)	PUNCT
arestyrurj-175	103	30	.	.	PUNCT
arestyrurj-175	104	1	there	there	PRON
arestyrurj-175	104	2	is	be	VERB
arestyrurj-175	104	3	a	a	DET
arestyrurj-175	104	4	comparable	comparable	ADJ
arestyrurj-175	104	5	difference	difference	NOUN
arestyrurj-175	104	6	between	between	ADP
arestyrurj-175	104	7	colonic	colonic	ADJ
arestyrurj-175	104	8	epithelial	epithelial	ADJ
arestyrurj-175	104	9	and	and	CCONJ
arestyrurj-175	104	10	duodenal	duodenal	ADJ
arestyrurj-175	104	11	crypt	crypt	NOUN
arestyrurj-175	104	12	cells	cell	NOUN
arestyrurj-175	104	13	,	,	PUNCT
arestyrurj-175	104	14	which	which	PRON
arestyrurj-175	104	15	differ	differ	VERB
arestyrurj-175	104	16	in	in	ADP
arestyrurj-175	104	17	only	only	ADV
arestyrurj-175	104	18	1,102	1,102	NUM
arestyrurj-175	104	19	vdrbinding	vdrbinde	VERB
arestyrurj-175	104	20	sites	site	NOUN
arestyrurj-175	104	21	out	out	ADP
arestyrurj-175	104	22	of	of	ADP
arestyrurj-175	104	23	20,751	20,751	NUM
arestyrurj-175	104	24	sites	site	NOUN
arestyrurj-175	104	25	total	total	ADJ
arestyrurj-175	104	26	.	.	PUNCT
arestyrurj-175	105	1	nonetheless	nonetheless	ADV
arestyrurj-175	105	2	,	,	PUNCT
arestyrurj-175	105	3	these	these	DET
arestyrurj-175	105	4	small	small	ADJ
arestyrurj-175	105	5	differences	difference	NOUN
arestyrurj-175	105	6	are	be	AUX
arestyrurj-175	105	7	far	far	ADV
arestyrurj-175	105	8	greater	great	ADJ
arestyrurj-175	105	9	than	than	ADP
arestyrurj-175	105	10	the	the	DET
arestyrurj-175	105	11	minuscule	minuscule	ADJ
arestyrurj-175	105	12	difference	difference	NOUN
arestyrurj-175	105	13	between	between	ADP
arestyrurj-175	105	14	duodenal	duodenal	ADJ
arestyrurj-175	105	15	crypt	crypt	NOUN
arestyrurj-175	105	16	and	and	CCONJ
arestyrurj-175	105	17	duodenal	duodenal	ADJ
arestyrurj-175	105	18	villi	villi	NOUN
arestyrurj-175	105	19	cells	cell	NOUN
arestyrurj-175	105	20	,	,	PUNCT
arestyrurj-175	105	21	which	which	PRON
arestyrurj-175	105	22	differ	differ	VERB
arestyrurj-175	105	23	by	by	ADP
arestyrurj-175	105	24	only	only	ADV
arestyrurj-175	105	25	85	85	NUM
arestyrurj-175	105	26	vdr	vdr	NOUN
arestyrurj-175	105	27	-	-	PUNCT
arestyrurj-175	105	28	binding	bind	VERB
arestyrurj-175	105	29	sites	site	NOUN
arestyrurj-175	105	30	out	out	ADP
arestyrurj-175	105	31	of	of	ADP
arestyrurj-175	105	32	20,479	20,479	NUM
arestyrurj-175	105	33	sites	site	NOUN
arestyrurj-175	105	34	total	total	VERB
arestyrurj-175	105	35	(	(	PUNCT
arestyrurj-175	105	36	figure	figure	NOUN
arestyrurj-175	105	37	4	4	NUM
arestyrurj-175	105	38	)	)	PUNCT
arestyrurj-175	105	39	.	.	PUNCT
arestyrurj-175	106	1	the	the	DET
arestyrurj-175	106	2	accuracy	accuracy	NOUN
arestyrurj-175	106	3	of	of	ADP
arestyrurj-175	106	4	the	the	DET
arestyrurj-175	106	5	differential	differential	ADJ
arestyrurj-175	106	6	binding	bind	VERB
arestyrurj-175	106	7	analysis	analysis	NOUN
arestyrurj-175	106	8	performed	perform	VERB
arestyrurj-175	106	9	by	by	ADP
arestyrurj-175	106	10	diffbind	diffbind	NOUN
arestyrurj-175	106	11	was	be	AUX
arestyrurj-175	106	12	assessed	assess	VERB
arestyrurj-175	106	13	by	by	ADP
arestyrurj-175	106	14	comparing	compare	VERB
arestyrurj-175	106	15	each	each	DET
arestyrurj-175	106	16	cell	cell	NOUN
arestyrurj-175	106	17	type	type	NOUN
arestyrurj-175	106	18	’s	’s	PART
arestyrurj-175	106	19	enriched	enrich	VERB
arestyrurj-175	106	20	peak	peak	NOUN
arestyrurj-175	106	21	set	set	VERB
arestyrurj-175	106	22	bed	bed	NOUN
arestyrurj-175	106	23	file	file	NOUN
arestyrurj-175	106	24	against	against	ADP
arestyrurj-175	106	25	all	all	PRON
arestyrurj-175	106	26	of	of	ADP
arestyrurj-175	106	27	the	the	DET
arestyrurj-175	106	28	composite	composite	ADJ
arestyrurj-175	106	29	track	track	NOUN
arestyrurj-175	106	30	bigwig	bigwig	NOUN
arestyrurj-175	106	31	files	file	NOUN
arestyrurj-175	106	32	.	.	PUNCT
arestyrurj-175	107	1	the	the	DET
arestyrurj-175	107	2	resulting	result	VERB
arestyrurj-175	107	3	signal	signal	NOUN
arestyrurj-175	107	4	plots	plot	NOUN
arestyrurj-175	107	5	indicate	indicate	VERB
arestyrurj-175	107	6	that	that	SCONJ
arestyrurj-175	107	7	all	all	PRON
arestyrurj-175	107	8	of	of	ADP
arestyrurj-175	107	9	the	the	DET
arestyrurj-175	107	10	tissueenriched	tissueenriche	VERB
arestyrurj-175	107	11	peak	peak	NOUN
arestyrurj-175	107	12	sets	set	NOUN
arestyrurj-175	107	13	exhibit	exhibit	VERB
arestyrurj-175	107	14	greater	great	ADJ
arestyrurj-175	107	15	overlap	overlap	NOUN
arestyrurj-175	107	16	with	with	ADP
arestyrurj-175	107	17	vdrresponsive	vdrresponsive	ADJ
arestyrurj-175	107	18	elements	element	NOUN
arestyrurj-175	107	19	in	in	ADP
arestyrurj-175	107	20	the	the	DET
arestyrurj-175	107	21	tissue	tissue	NOUN
arestyrurj-175	107	22	of	of	ADP
arestyrurj-175	107	23	their	their	PRON
arestyrurj-175	107	24	enrichment	enrichment	NOUN
arestyrurj-175	107	25	than	than	ADP
arestyrurj-175	107	26	with	with	ADP
arestyrurj-175	107	27	vdr	vdr	NOUN
arestyrurj-175	107	28	-	-	PUNCT
arestyrurj-175	107	29	binding	bind	VERB
arestyrurj-175	107	30	sites	site	NOUN
arestyrurj-175	107	31	in	in	ADP
arestyrurj-175	107	32	other	other	ADJ
arestyrurj-175	107	33	tissues	tissue	NOUN
arestyrurj-175	107	34	(	(	PUNCT
arestyrurj-175	107	35	figure	figure	NOUN
arestyrurj-175	107	36	5	5	NUM
arestyrurj-175	107	37	)	)	PUNCT
arestyrurj-175	107	38	.	.	PUNCT
arestyrurj-175	108	1	thus	thus	ADV
arestyrurj-175	108	2	,	,	PUNCT
arestyrurj-175	108	3	we	we	PRON
arestyrurj-175	108	4	confirm	confirm	VERB
arestyrurj-175	108	5	that	that	SCONJ
arestyrurj-175	108	6	the	the	DET
arestyrurj-175	108	7	tissue	tissue	NOUN
arestyrurj-175	108	8	-	-	PUNCT
arestyrurj-175	108	9	enriched	enrich	VERB
arestyrurj-175	108	10	vdr	vdr	NOUN
arestyrurj-175	108	11	-	-	PUNCT
arestyrurj-175	108	12	responsive	responsive	ADJ
arestyrurj-175	108	13	elements	element	NOUN
arestyrurj-175	108	14	identified	identify	VERB
arestyrurj-175	108	15	by	by	ADP
arestyrurj-175	108	16	diffbind	diffbind	ADJ
arestyrurj-175	108	17	exhibit	exhibit	NOUN
arestyrurj-175	108	18	elevated	elevate	VERB
arestyrurj-175	108	19	vdr	vdr	NOUN
arestyrurj-175	108	20	binding	bind	VERB
arestyrurj-175	108	21	in	in	ADP
arestyrurj-175	108	22	the	the	DET
arestyrurj-175	108	23	tissue	tissue	NOUN
arestyrurj-175	108	24	of	of	ADP
arestyrurj-175	108	25	their	their	PRON
arestyrurj-175	108	26	enrichment	enrichment	NOUN
arestyrurj-175	108	27	,	,	PUNCT
arestyrurj-175	108	28	as	as	SCONJ
arestyrurj-175	108	29	expected	expect	VERB
arestyrurj-175	108	30	of	of	ADP
arestyrurj-175	108	31	tissue	tissue	NOUN
arestyrurj-175	108	32	-	-	PUNCT
arestyrurj-175	108	33	enriched	enrich	VERB
arestyrurj-175	108	34	responsive	responsive	ADJ
arestyrurj-175	108	35	elements	element	NOUN
arestyrurj-175	108	36	.	.	PUNCT
arestyrurj-175	109	1	comparison	comparison	NOUN
arestyrurj-175	109	2	of	of	ADP
arestyrurj-175	109	3	vdr	vdr	NOUN
arestyrurj-175	109	4	chip	chip	NOUN
arestyrurj-175	109	5	-	-	PUNCT
arestyrurj-175	109	6	seq	seq	NOUN
arestyrurj-175	109	7	&	&	CCONJ
arestyrurj-175	109	8	atac	atac	NOUN
arestyrurj-175	109	9	-	-	PUNCT
arestyrurj-175	109	10	seq	seq	NOUN
arestyrurj-175	109	11	to	to	PART
arestyrurj-175	109	12	investigate	investigate	VERB
arestyrurj-175	109	13	our	our	PRON
arestyrurj-175	109	14	hypothesis	hypothesis	NOUN
arestyrurj-175	109	15	that	that	SCONJ
arestyrurj-175	109	16	regionally	regionally	ADV
arestyrurj-175	109	17	-	-	PUNCT
arestyrurj-175	109	18	enriched	enrich	VERB
arestyrurj-175	109	19	vdr	vdr	NOUN
arestyrurj-175	109	20	binding	bind	VERB
arestyrurj-175	109	21	results	result	NOUN
arestyrurj-175	109	22	from	from	ADP
arestyrurj-175	109	23	differential	differential	ADJ
arestyrurj-175	109	24	chromatin	chromatin	NOUN
arestyrurj-175	109	25	accessibility	accessibility	NOUN
arestyrurj-175	109	26	between	between	ADP
arestyrurj-175	109	27	tissues	tissue	NOUN
arestyrurj-175	109	28	,	,	PUNCT
arestyrurj-175	109	29	we	we	PRON
arestyrurj-175	109	30	compared	compare	VERB
arestyrurj-175	109	31	duodenumand	duodenumand	VERB
arestyrurj-175	109	32	colon	colon	NOUN
arestyrurj-175	109	33	-	-	PUNCT
arestyrurj-175	109	34	enriched	enrich	VERB
arestyrurj-175	109	35	vdr	vdr	NOUN
arestyrurj-175	109	36	-	-	PUNCT
arestyrurj-175	109	37	binding	bind	VERB
arestyrurj-175	109	38	peaks	peak	NOUN
arestyrurj-175	109	39	bed	bed	NOUN
arestyrurj-175	109	40	files	file	NOUN
arestyrurj-175	109	41	against	against	ADP
arestyrurj-175	109	42	all	all	PRON
arestyrurj-175	109	43	of	of	ADP
arestyrurj-175	109	44	the	the	DET
arestyrurj-175	109	45	composite	composite	ADJ
arestyrurj-175	109	46	atac	atac	NOUN
arestyrurj-175	109	47	-	-	PUNCT
arestyrurj-175	109	48	seq	seq	NOUN
arestyrurj-175	109	49	bigwig	bigwig	NOUN
arestyrurj-175	109	50	files	file	NOUN
arestyrurj-175	109	51	.	.	PUNCT
arestyrurj-175	110	1	the	the	DET
arestyrurj-175	110	2	resulting	result	VERB
arestyrurj-175	110	3	signal	signal	NOUN
arestyrurj-175	110	4	plots	plot	NOUN
arestyrurj-175	110	5	indicate	indicate	VERB
arestyrurj-175	110	6	that	that	SCONJ
arestyrurj-175	110	7	all	all	PRON
arestyrurj-175	110	8	of	of	ADP
arestyrurj-175	110	9	the	the	DET
arestyrurj-175	110	10	regionally	regionally	ADV
arestyrurj-175	110	11	-	-	PUNCT
arestyrurj-175	110	12	enriched	enrich	VERB
arestyrurj-175	110	13	vdr	vdr	NOUN
arestyrurj-175	110	14	chip	chip	NOUN
arestyrurj-175	110	15	-	-	PUNCT
arestyrurj-175	110	16	seq	seq	NOUN
arestyrurj-175	110	17	peak	peak	NOUN
arestyrurj-175	110	18	sets	set	NOUN
arestyrurj-175	110	19	exhibit	exhibit	VERB
arestyrurj-175	110	20	greater	great	ADJ
arestyrurj-175	110	21	overlap	overlap	NOUN
arestyrurj-175	110	22	with	with	ADP
arestyrurj-175	110	23	open	open	ADJ
arestyrurj-175	110	24	chromatin	chromatin	NOUN
arestyrurj-175	110	25	sites	site	NOUN
arestyrurj-175	110	26	in	in	ADP
arestyrurj-175	110	27	the	the	DET
arestyrurj-175	110	28	region	region	NOUN
arestyrurj-175	110	29	of	of	ADP
arestyrurj-175	110	30	their	their	PRON
arestyrurj-175	110	31	enrichment	enrichment	NOUN
arestyrurj-175	110	32	than	than	ADP
arestyrurj-175	110	33	with	with	ADP
arestyrurj-175	110	34	open	open	ADJ
arestyrurj-175	110	35	chromatin	chromatin	NOUN
arestyrurj-175	110	36	sites	site	NOUN
arestyrurj-175	110	37	in	in	ADP
arestyrurj-175	110	38	the	the	DET
arestyrurj-175	110	39	other	other	ADJ
arestyrurj-175	110	40	region	region	NOUN
arestyrurj-175	110	41	(	(	PUNCT
arestyrurj-175	110	42	figure	figure	NOUN
arestyrurj-175	110	43	6	6	NUM
arestyrurj-175	110	44	)	)	PUNCT
arestyrurj-175	110	45	.	.	PUNCT
arestyrurj-175	111	1	thus	thus	ADV
arestyrurj-175	111	2	,	,	PUNCT
arestyrurj-175	111	3	we	we	PRON
arestyrurj-175	111	4	conclude	conclude	VERB
arestyrurj-175	111	5	that	that	SCONJ
arestyrurj-175	111	6	differences	difference	NOUN
arestyrurj-175	111	7	in	in	ADP
arestyrurj-175	111	8	vdr	vdr	NOUN
arestyrurj-175	111	9	binding	bind	VERB
arestyrurj-175	111	10	result	result	NOUN
arestyrurj-175	111	11	from	from	ADP
arestyrurj-175	111	12	differences	difference	NOUN
arestyrurj-175	111	13	in	in	ADP
arestyrurj-175	111	14	chromatin	chromatin	NOUN
arestyrurj-175	111	15	accessibility	accessibility	NOUN
arestyrurj-175	111	16	between	between	ADP
arestyrurj-175	111	17	regions	region	NOUN
arestyrurj-175	111	18	.	.	PUNCT
arestyrurj-175	112	1	motif	motif	NOUN
arestyrurj-175	112	2	finding	finding	NOUN
arestyrurj-175	112	3	due	due	ADJ
arestyrurj-175	112	4	to	to	ADP
arestyrurj-175	112	5	limited	limited	ADJ
arestyrurj-175	112	6	computational	computational	ADJ
arestyrurj-175	112	7	resources	resource	NOUN
arestyrurj-175	112	8	,	,	PUNCT
arestyrurj-175	112	9	motif	motif	NOUN
arestyrurj-175	112	10	finding	finding	NOUN
arestyrurj-175	112	11	was	be	AUX
arestyrurj-175	112	12	conducted	conduct	VERB
arestyrurj-175	112	13	on	on	ADP
arestyrurj-175	112	14	samples	sample	NOUN
arestyrurj-175	112	15	generated	generate	VERB
arestyrurj-175	112	16	by	by	ADP
arestyrurj-175	112	17	randomly	randomly	ADV
arestyrurj-175	112	18	selecting	select	VERB
arestyrurj-175	112	19	one	one	NUM
arestyrurj-175	112	20	-	-	PUNCT
arestyrurj-175	112	21	fifth	fifth	NOUN
arestyrurj-175	112	22	of	of	ADP
arestyrurj-175	112	23	the	the	DET
arestyrurj-175	112	24	peaks	peak	NOUN
arestyrurj-175	112	25	in	in	ADP
arestyrurj-175	112	26	each	each	DET
arestyrurj-175	112	27	composite	composite	ADJ
arestyrurj-175	112	28	vdr	vdr	NOUN
arestyrurj-175	112	29	chip	chip	NOUN
arestyrurj-175	112	30	-	-	PUNCT
arestyrurj-175	112	31	seq	seq	NOUN
arestyrurj-175	112	32	peak	peak	NOUN
arestyrurj-175	112	33	set	set	NOUN
arestyrurj-175	112	34	(	(	PUNCT
arestyrurj-175	112	35	table	table	NOUN
arestyrurj-175	112	36	2	2	NUM
arestyrurj-175	112	37	)	)	PUNCT
arestyrurj-175	112	38	.	.	PUNCT
arestyrurj-175	113	1	vdr	vdr	NOUN
arestyrurj-175	113	2	is	be	AUX
arestyrurj-175	113	3	the	the	DET
arestyrurj-175	113	4	most	most	ADV
arestyrurj-175	113	5	significant	significant	ADJ
arestyrurj-175	113	6	motif	motif	NOUN
arestyrurj-175	113	7	present	present	ADJ
arestyrurj-175	113	8	in	in	ADP
arestyrurj-175	113	9	any	any	PRON
arestyrurj-175	113	10	of	of	ADP
arestyrurj-175	113	11	the	the	DET
arestyrurj-175	113	12	composite	composite	ADJ
arestyrurj-175	113	13	vdr	vdr	NOUN
arestyrurj-175	113	14	chip	chip	NOUN
arestyrurj-175	113	15	-	-	PUNCT
arestyrurj-175	113	16	seq	seq	NOUN
arestyrurj-175	113	17	peak	peak	NOUN
arestyrurj-175	113	18	set	set	VERB
arestyrurj-175	113	19	samples	sample	NOUN
arestyrurj-175	113	20	(	(	PUNCT
arestyrurj-175	113	21	figure	figure	NOUN
arestyrurj-175	113	22	7	7	NUM
arestyrurj-175	113	23	)	)	PUNCT
arestyrurj-175	113	24	,	,	PUNCT
arestyrurj-175	113	25	indicating	indicate	VERB
arestyrurj-175	113	26	that	that	SCONJ
arestyrurj-175	113	27	the	the	DET
arestyrurj-175	113	28	vdr	vdr	NOUN
arestyrurj-175	113	29	chip	chip	NOUN
arestyrurj-175	113	30	-	-	PUNCT
arestyrurj-175	113	31	seq	seq	NOUN
arestyrurj-175	113	32	was	be	AUX
arestyrurj-175	113	33	performed	perform	VERB
arestyrurj-175	113	34	correctly	correctly	ADV
arestyrurj-175	113	35	.	.	PUNCT
arestyrurj-175	114	1	besides	besides	SCONJ
arestyrurj-175	114	2	vdr	vdr	VERB
arestyrurj-175	114	3	motifs	motif	NOUN
arestyrurj-175	114	4	,	,	PUNCT
arestyrurj-175	114	5	the	the	DET
arestyrurj-175	114	6	colonenriched	colonenriched	ADJ
arestyrurj-175	114	7	peak	peak	NOUN
arestyrurj-175	114	8	set	set	VERB
arestyrurj-175	114	9	samples	sample	NOUN
arestyrurj-175	114	10	also	also	ADV
arestyrurj-175	114	11	exhibit	exhibit	VERB
arestyrurj-175	114	12	hoxb13	hoxb13	NOUN
arestyrurj-175	114	13	,	,	PUNCT
arestyrurj-175	114	14	figure	figure	VERB
arestyrurj-175	114	15	7	7	NUM
arestyrurj-175	114	16	:	:	PUNCT
arestyrurj-175	114	17	vdr	vdr	VERB
arestyrurj-175	114	18	motif	motif	NOUN
arestyrurj-175	114	19	presence	presence	NOUN
arestyrurj-175	114	20	in	in	ADP
arestyrurj-175	114	21	vdr	vdr	NOUN
arestyrurj-175	114	22	chip	chip	NOUN
arestyrurj-175	114	23	-	-	PUNCT
arestyrurj-175	114	24	seq	seq	NOUN
arestyrurj-175	114	25	peak	peak	NOUN
arestyrurj-175	114	26	set	set	NOUN
arestyrurj-175	114	27	samples	sample	NOUN
arestyrurj-175	114	28	vdr	vdr	VERB
arestyrurj-175	114	29	motif	motif	NOUN
arestyrurj-175	114	30	was	be	AUX
arestyrurj-175	114	31	the	the	DET
arestyrurj-175	114	32	top	top	ADJ
arestyrurj-175	114	33	transcription	transcription	NOUN
arestyrurj-175	114	34	factor	factor	NOUN
arestyrurj-175	114	35	motif	motif	NOUN
arestyrurj-175	114	36	identified	identify	VERB
arestyrurj-175	114	37	in	in	ADP
arestyrurj-175	114	38	all	all	PRON
arestyrurj-175	114	39	of	of	ADP
arestyrurj-175	114	40	the	the	DET
arestyrurj-175	114	41	composite	composite	ADJ
arestyrurj-175	114	42	vdr	vdr	NOUN
arestyrurj-175	114	43	chip	chip	NOUN
arestyrurj-175	114	44	-	-	PUNCT
arestyrurj-175	114	45	seq	seq	NOUN
arestyrurj-175	114	46	peak	peak	NOUN
arestyrurj-175	114	47	sets	set	NOUN
arestyrurj-175	114	48	.	.	PUNCT
arestyrurj-175	115	1	motifs	motif	NOUN
arestyrurj-175	115	2	were	be	AUX
arestyrurj-175	115	3	identified	identify	VERB
arestyrurj-175	115	4	using	use	VERB
arestyrurj-175	115	5	homer	homer	NOUN
arestyrurj-175	115	6	on	on	ADP
arestyrurj-175	115	7	a	a	DET
arestyrurj-175	115	8	random	random	ADJ
arestyrurj-175	115	9	sample	sample	NOUN
arestyrurj-175	115	10	of	of	ADP
arestyrurj-175	115	11	onefifth	onefifth	ADJ
arestyrurj-175	115	12	of	of	ADP
arestyrurj-175	115	13	each	each	DET
arestyrurj-175	115	14	composite	composite	ADJ
arestyrurj-175	115	15	peak	peak	NOUN
arestyrurj-175	115	16	set	set	VERB
arestyrurj-175	115	17	figure	figure	NOUN
arestyrurj-175	115	18	8	8	NUM
arestyrurj-175	115	19	:	:	PUNCT
arestyrurj-175	115	20	vdr	vdr	NOUN
arestyrurj-175	115	21	and	and	CCONJ
arestyrurj-175	115	22	secondary	secondary	ADJ
arestyrurj-175	115	23	motif	motif	NOUN
arestyrurj-175	115	24	presences	presence	NOUN
arestyrurj-175	115	25	in	in	ADP
arestyrurj-175	115	26	differential	differential	ADJ
arestyrurj-175	115	27	vdr	vdr	NOUN
arestyrurj-175	115	28	chip	chip	NOUN
arestyrurj-175	115	29	-	-	PUNCT
arestyrurj-175	115	30	seq	seq	NOUN
arestyrurj-175	115	31	peak	peak	NOUN
arestyrurj-175	115	32	sets	set	NOUN
arestyrurj-175	115	33	colonand	colonand	VERB
arestyrurj-175	115	34	duodenum	duodenum	ADV
arestyrurj-175	115	35	-	-	PUNCT
arestyrurj-175	115	36	enriched	enrich	VERB
arestyrurj-175	115	37	vdr	vdr	NOUN
arestyrurj-175	115	38	chip	chip	NOUN
arestyrurj-175	115	39	-	-	PUNCT
arestyrurj-175	115	40	seq	seq	NOUN
arestyrurj-175	115	41	peaks	peak	NOUN
arestyrurj-175	115	42	exhibit	exhibit	VERB
arestyrurj-175	115	43	different	different	ADJ
arestyrurj-175	115	44	secondary	secondary	ADJ
arestyrurj-175	115	45	transcription	transcription	NOUN
arestyrurj-175	115	46	factor	factor	NOUN
arestyrurj-175	115	47	motifs	motif	NOUN
arestyrurj-175	115	48	other	other	ADJ
arestyrurj-175	115	49	than	than	ADP
arestyrurj-175	115	50	vdr	vdr	NOUN
arestyrurj-175	115	51	.	.	PUNCT
arestyrurj-175	116	1	motifs	motif	NOUN
arestyrurj-175	116	2	were	be	AUX
arestyrurj-175	116	3	identified	identify	VERB
arestyrurj-175	116	4	using	use	VERB
arestyrurj-175	116	5	homer	homer	NOUN
arestyrurj-175	116	6	on	on	ADP
arestyrurj-175	116	7	each	each	DET
arestyrurj-175	116	8	differential	differential	ADJ
arestyrurj-175	116	9	peak	peak	NOUN
arestyrurj-175	116	10	set	set	VERB
arestyrurj-175	116	11	.	.	PUNCT
arestyrurj-175	117	1	aresty	aresty	PROPN
arestyrurj-175	117	2	rutgers	rutgers	PROPN
arestyrurj-175	117	3	undergraduate	undergraduate	PROPN
arestyrurj-175	117	4	research	research	PROPN
arestyrurj-175	117	5	journal	journal	PROPN
arestyrurj-175	117	6	,	,	PUNCT
arestyrurj-175	117	7	volume	volume	NOUN
arestyrurj-175	117	8	i	i	PRON
arestyrurj-175	117	9	,	,	PUNCT
arestyrurj-175	117	10	issue	issue	NOUN
arestyrurj-175	117	11	iii	iii	NUM
arestyrurj-175	117	12	cdx2	cdx2	PROPN
arestyrurj-175	117	13	,	,	PUNCT
arestyrurj-175	117	14	and	and	CCONJ
arestyrurj-175	117	15	foxa2	foxa2	PUNCT
arestyrurj-175	117	16	motifs	motif	NOUN
arestyrurj-175	117	17	,	,	PUNCT
arestyrurj-175	117	18	whereas	whereas	SCONJ
arestyrurj-175	117	19	the	the	DET
arestyrurj-175	117	20	cryptand	cryptand	NOUN
arestyrurj-175	117	21	villi	villi	NOUN
arestyrurj-175	117	22	-	-	PUNCT
arestyrurj-175	117	23	enriched	enrich	VERB
arestyrurj-175	117	24	peak	peak	NOUN
arestyrurj-175	117	25	set	set	VERB
arestyrurj-175	117	26	samples	sample	NOUN
arestyrurj-175	117	27	exhibit	exhibit	VERB
arestyrurj-175	117	28	hnf4α	hnf4α	NOUN
arestyrurj-175	117	29	,	,	PUNCT
arestyrurj-175	117	30	erra	erra	NOUN
arestyrurj-175	117	31	,	,	PUNCT
arestyrurj-175	117	32	and	and	CCONJ
arestyrurj-175	117	33	gata4	gata4	NOUN
arestyrurj-175	117	34	(	(	PUNCT
arestyrurj-175	117	35	figure	figure	NOUN
arestyrurj-175	117	36	8)	8)	NUM
arestyrurj-175	117	37	.	.	PUNCT
arestyrurj-175	118	1	these	these	DET
arestyrurj-175	118	2	results	result	NOUN
arestyrurj-175	118	3	suggest	suggest	VERB
arestyrurj-175	118	4	that	that	SCONJ
arestyrurj-175	118	5	differences	difference	NOUN
arestyrurj-175	118	6	in	in	ADP
arestyrurj-175	118	7	vdr	vdr	NOUN
arestyrurj-175	118	8	binding	bind	VERB
arestyrurj-175	118	9	between	between	ADP
arestyrurj-175	118	10	the	the	DET
arestyrurj-175	118	11	duodenal	duodenal	ADJ
arestyrurj-175	118	12	epithelium	epithelium	NOUN
arestyrurj-175	118	13	and	and	CCONJ
arestyrurj-175	118	14	colonic	colonic	ADJ
arestyrurj-175	118	15	epithelium	epithelium	NOUN
arestyrurj-175	118	16	may	may	AUX
arestyrurj-175	118	17	result	result	VERB
arestyrurj-175	118	18	from	from	ADP
arestyrurj-175	118	19	differences	difference	NOUN
arestyrurj-175	118	20	in	in	ADP
arestyrurj-175	118	21	the	the	DET
arestyrurj-175	118	22	helper	helper	NOUN
arestyrurj-175	118	23	transcription	transcription	NOUN
arestyrurj-175	118	24	factors	factor	NOUN
arestyrurj-175	118	25	that	that	PRON
arestyrurj-175	118	26	facilitate	facilitate	VERB
arestyrurj-175	118	27	vdr	vdr	NOUN
arestyrurj-175	118	28	-	-	PUNCT
arestyrurj-175	118	29	dna	dna	NOUN
arestyrurj-175	118	30	binding	binding	NOUN
arestyrurj-175	118	31	.	.	PUNCT
arestyrurj-175	119	1	4	4	NUM
arestyrurj-175	119	2	discussion	discussion	NOUN
arestyrurj-175	119	3	we	we	PRON
arestyrurj-175	119	4	found	find	VERB
arestyrurj-175	119	5	that	that	SCONJ
arestyrurj-175	119	6	the	the	DET
arestyrurj-175	119	7	vdr	vdr	NOUN
arestyrurj-175	119	8	-	-	PUNCT
arestyrurj-175	119	9	binding	bind	VERB
arestyrurj-175	119	10	profile	profile	NOUN
arestyrurj-175	119	11	of	of	ADP
arestyrurj-175	119	12	colonic	colonic	ADJ
arestyrurj-175	119	13	epithelial	epithelial	ADJ
arestyrurj-175	119	14	cells	cell	NOUN
arestyrurj-175	119	15	is	be	AUX
arestyrurj-175	119	16	largely	largely	ADV
arestyrurj-175	119	17	similar	similar	ADJ
arestyrurj-175	119	18	to	to	ADP
arestyrurj-175	119	19	that	that	PRON
arestyrurj-175	119	20	of	of	ADP
arestyrurj-175	119	21	duodenal	duodenal	ADJ
arestyrurj-175	119	22	villi	villi	NOUN
arestyrurj-175	119	23	and	and	CCONJ
arestyrurj-175	119	24	duodenal	duodenal	ADJ
arestyrurj-175	119	25	crypt	crypt	NOUN
arestyrurj-175	119	26	cells	cell	NOUN
arestyrurj-175	119	27	.	.	PUNCT
arestyrurj-175	120	1	out	out	ADP
arestyrurj-175	120	2	of	of	ADP
arestyrurj-175	120	3	about	about	ADV
arestyrurj-175	120	4	twenty	twenty	NUM
arestyrurj-175	120	5	thousand	thousand	NUM
arestyrurj-175	120	6	vdr	vdr	NOUN
arestyrurj-175	120	7	binding	bind	VERB
arestyrurj-175	120	8	sites	site	NOUN
arestyrurj-175	120	9	total	total	VERB
arestyrurj-175	120	10	,	,	PUNCT
arestyrurj-175	120	11	only	only	ADV
arestyrurj-175	120	12	a	a	DET
arestyrurj-175	120	13	minority	minority	NOUN
arestyrurj-175	120	14	of	of	ADP
arestyrurj-175	120	15	several	several	ADJ
arestyrurj-175	120	16	hundred	hundred	NUM
arestyrurj-175	120	17	binding	bind	VERB
arestyrurj-175	120	18	sites	site	NOUN
arestyrurj-175	120	19	differ	differ	VERB
arestyrurj-175	120	20	between	between	ADP
arestyrurj-175	120	21	colonic	colonic	ADJ
arestyrurj-175	120	22	epithelial	epithelial	ADJ
arestyrurj-175	120	23	cells	cell	NOUN
arestyrurj-175	120	24	and	and	CCONJ
arestyrurj-175	120	25	duodenal	duodenal	ADJ
arestyrurj-175	120	26	epithelial	epithelial	ADJ
arestyrurj-175	120	27	cells	cell	NOUN
arestyrurj-175	120	28	.	.	PUNCT
arestyrurj-175	121	1	nonetheless	nonetheless	ADV
arestyrurj-175	121	2	,	,	PUNCT
arestyrurj-175	121	3	this	this	DET
arestyrurj-175	121	4	difference	difference	NOUN
arestyrurj-175	121	5	is	be	AUX
arestyrurj-175	121	6	greater	great	ADJ
arestyrurj-175	121	7	than	than	ADP
arestyrurj-175	121	8	that	that	PRON
arestyrurj-175	121	9	between	between	ADP
arestyrurj-175	121	10	duodenal	duodenal	ADJ
arestyrurj-175	121	11	villi	villi	NOUN
arestyrurj-175	121	12	and	and	CCONJ
arestyrurj-175	121	13	duodenal	duodenal	ADJ
arestyrurj-175	121	14	crypt	crypt	NOUN
arestyrurj-175	121	15	cells	cell	NOUN
arestyrurj-175	121	16	,	,	PUNCT
arestyrurj-175	121	17	which	which	PRON
arestyrurj-175	121	18	differ	differ	VERB
arestyrurj-175	121	19	in	in	ADP
arestyrurj-175	121	20	less	less	ADJ
arestyrurj-175	121	21	than	than	ADP
arestyrurj-175	121	22	one	one	NUM
arestyrurj-175	121	23	hundred	hundred	NUM
arestyrurj-175	121	24	binding	bind	VERB
arestyrurj-175	121	25	sites	site	NOUN
arestyrurj-175	121	26	.	.	PUNCT
arestyrurj-175	122	1	by	by	ADP
arestyrurj-175	122	2	comparing	compare	VERB
arestyrurj-175	122	3	vdr	vdr	NOUN
arestyrurj-175	122	4	chip	chip	NOUN
arestyrurj-175	122	5	-	-	PUNCT
arestyrurj-175	122	6	seq	seq	NOUN
arestyrurj-175	122	7	and	and	CCONJ
arestyrurj-175	122	8	atac	atac	ADJ
arestyrurj-175	122	9	-	-	PUNCT
arestyrurj-175	122	10	seq	seq	NOUN
arestyrurj-175	122	11	data	datum	NOUN
arestyrurj-175	122	12	,	,	PUNCT
arestyrurj-175	122	13	we	we	PRON
arestyrurj-175	122	14	found	find	VERB
arestyrurj-175	122	15	that	that	PRON
arestyrurj-175	122	16	colonand	colonand	VERB
arestyrurj-175	122	17	duodenum	duodenum	ADV
arestyrurj-175	122	18	-	-	PUNCT
arestyrurj-175	122	19	enriched	enrich	VERB
arestyrurj-175	122	20	vdr	vdr	NOUN
arestyrurj-175	122	21	-	-	PUNCT
arestyrurj-175	122	22	binding	bind	VERB
arestyrurj-175	122	23	sites	site	NOUN
arestyrurj-175	122	24	exhibited	exhibit	VERB
arestyrurj-175	122	25	greater	great	ADJ
arestyrurj-175	122	26	chromatin	chromatin	NOUN
arestyrurj-175	122	27	accessibility	accessibility	NOUN
arestyrurj-175	122	28	in	in	ADP
arestyrurj-175	122	29	the	the	DET
arestyrurj-175	122	30	tissue	tissue	NOUN
arestyrurj-175	122	31	of	of	ADP
arestyrurj-175	122	32	their	their	PRON
arestyrurj-175	122	33	enrichment	enrichment	NOUN
arestyrurj-175	122	34	.	.	PUNCT
arestyrurj-175	123	1	we	we	PRON
arestyrurj-175	123	2	also	also	ADV
arestyrurj-175	123	3	determined	determine	VERB
arestyrurj-175	123	4	that	that	SCONJ
arestyrurj-175	123	5	colonand	colonand	VERB
arestyrurj-175	123	6	duodenum	duodenum	ADV
arestyrurj-175	123	7	-	-	PUNCT
arestyrurj-175	123	8	enriched	enrich	VERB
arestyrurj-175	123	9	vdr	vdr	NOUN
arestyrurj-175	123	10	-	-	PUNCT
arestyrurj-175	123	11	binding	bind	VERB
arestyrurj-175	123	12	sites	site	NOUN
arestyrurj-175	123	13	exhibit	exhibit	VERB
arestyrurj-175	123	14	distinct	distinct	ADJ
arestyrurj-175	123	15	sets	set	NOUN
arestyrurj-175	123	16	of	of	ADP
arestyrurj-175	123	17	secondary	secondary	ADJ
arestyrurj-175	123	18	(	(	PUNCT
arestyrurj-175	123	19	i.e.	i.e.	X
arestyrurj-175	123	20	non	non	ADJ
arestyrurj-175	123	21	-	-	ADJ
arestyrurj-175	123	22	vdr	vdr	ADJ
arestyrurj-175	123	23	)	)	PUNCT
arestyrurj-175	123	24	transcription	transcription	NOUN
arestyrurj-175	123	25	factor	factor	NOUN
arestyrurj-175	123	26	motifs	motif	NOUN
arestyrurj-175	123	27	.	.	PUNCT
arestyrurj-175	124	1	colon	colon	NOUN
arestyrurj-175	124	2	-	-	PUNCT
arestyrurj-175	124	3	enriched	enrich	VERB
arestyrurj-175	124	4	vdr	vdr	NOUN
arestyrurj-175	124	5	-	-	PUNCT
arestyrurj-175	124	6	binding	bind	VERB
arestyrurj-175	124	7	sites	site	NOUN
arestyrurj-175	124	8	exhibit	exhibit	VERB
arestyrurj-175	124	9	hoxb13	hoxb13	NOUN
arestyrurj-175	124	10	,	,	PUNCT
arestyrurj-175	124	11	cdx2	cdx2	NOUN
arestyrurj-175	124	12	,	,	PUNCT
arestyrurj-175	124	13	and	and	CCONJ
arestyrurj-175	124	14	foxa2	foxa2	PUNCT
arestyrurj-175	124	15	motifs	motif	NOUN
arestyrurj-175	124	16	;	;	PUNCT
arestyrurj-175	124	17	duodenum	duodenum	ADJ
arestyrurj-175	124	18	-	-	PUNCT
arestyrurj-175	124	19	enriched	enrich	VERB
arestyrurj-175	124	20	vdr	vdr	NOUN
arestyrurj-175	124	21	-	-	PUNCT
arestyrurj-175	124	22	binding	bind	VERB
arestyrurj-175	124	23	sites	site	NOUN
arestyrurj-175	124	24	exhibit	exhibit	VERB
arestyrurj-175	124	25	hnf4α	hnf4α	PROPN
arestyrurj-175	124	26	,	,	PUNCT
arestyrurj-175	124	27	gata4	gata4	NOUN
arestyrurj-175	124	28	,	,	PUNCT
arestyrurj-175	124	29	and	and	CCONJ
arestyrurj-175	124	30	erra	erra	PROPN
arestyrurj-175	124	31	motifs	motif	NOUN
arestyrurj-175	124	32	.	.	PUNCT
arestyrurj-175	125	1	these	these	DET
arestyrurj-175	125	2	findings	finding	NOUN
arestyrurj-175	125	3	concur	concur	VERB
arestyrurj-175	125	4	with	with	ADP
arestyrurj-175	125	5	those	those	PRON
arestyrurj-175	125	6	of	of	ADP
arestyrurj-175	125	7	a	a	DET
arestyrurj-175	125	8	previous	previous	ADJ
arestyrurj-175	125	9	investigation	investigation	NOUN
arestyrurj-175	125	10	which	which	PRON
arestyrurj-175	125	11	found	find	VERB
arestyrurj-175	125	12	that	that	SCONJ
arestyrurj-175	125	13	vdr	vdr	NOUN
arestyrurj-175	125	14	-	-	PUNCT
arestyrurj-175	125	15	binding	bind	VERB
arestyrurj-175	125	16	sites	site	NOUN
arestyrurj-175	125	17	in	in	ADP
arestyrurj-175	125	18	the	the	DET
arestyrurj-175	125	19	duodenum	duodenum	NOUN
arestyrurj-175	125	20	exhibited	exhibit	VERB
arestyrurj-175	125	21	hnf4α	hnf4α	PROPN
arestyrurj-175	125	22	and	and	CCONJ
arestyrurj-175	125	23	gata4	gata4	NOUN
arestyrurj-175	125	24	motifs	motif	NOUN
arestyrurj-175	125	25	in	in	ADP
arestyrurj-175	125	26	addition	addition	NOUN
arestyrurj-175	125	27	to	to	PART
arestyrurj-175	125	28	vdr	vdr	VERB
arestyrurj-175	125	29	motifs.[12	motifs.[12	PROPN
arestyrurj-175	125	30	]	]	PUNCT
arestyrurj-175	125	31	tissue	tissue	NOUN
arestyrurj-175	125	32	-	-	PUNCT
arestyrurj-175	125	33	specific	specific	ADJ
arestyrurj-175	125	34	secondary	secondary	ADJ
arestyrurj-175	125	35	transcription	transcription	NOUN
arestyrurj-175	125	36	factors	factor	NOUN
arestyrurj-175	125	37	may	may	AUX
arestyrurj-175	125	38	cause	cause	VERB
arestyrurj-175	125	39	differential	differential	ADJ
arestyrurj-175	125	40	vdr	vdr	NOUN
arestyrurj-175	125	41	binding	bind	VERB
arestyrurj-175	125	42	,	,	PUNCT
arestyrurj-175	125	43	either	either	CCONJ
arestyrurj-175	125	44	by	by	ADP
arestyrurj-175	125	45	causing	cause	VERB
arestyrurj-175	125	46	the	the	DET
arestyrurj-175	125	47	differences	difference	NOUN
arestyrurj-175	125	48	in	in	ADP
arestyrurj-175	125	49	open	open	ADJ
arestyrurj-175	125	50	chromatin	chromatin	NOUN
arestyrurj-175	125	51	observed	observe	VERB
arestyrurj-175	125	52	at	at	ADP
arestyrurj-175	125	53	differential	differential	ADJ
arestyrurj-175	125	54	binding	bind	VERB
arestyrurj-175	125	55	sites	site	NOUN
arestyrurj-175	125	56	,	,	PUNCT
arestyrurj-175	125	57	or	or	CCONJ
arestyrurj-175	125	58	by	by	ADP
arestyrurj-175	125	59	directly	directly	ADV
arestyrurj-175	125	60	binding	bind	VERB
arestyrurj-175	125	61	to	to	PART
arestyrurj-175	125	62	vdr	vdr	VERB
arestyrurj-175	125	63	and	and	CCONJ
arestyrurj-175	125	64	affecting	affect	VERB
arestyrurj-175	125	65	vdr	vdr	NOUN
arestyrurj-175	125	66	-	-	PUNCT
arestyrurj-175	125	67	dna	dna	NOUN
arestyrurj-175	125	68	binding	binding	NOUN
arestyrurj-175	125	69	.	.	PUNCT
arestyrurj-175	126	1	possible	possible	ADJ
arestyrurj-175	126	2	binding	binding	ADJ
arestyrurj-175	126	3	interactions	interaction	NOUN
arestyrurj-175	126	4	between	between	ADP
arestyrurj-175	126	5	vdr	vdr	NOUN
arestyrurj-175	126	6	and	and	CCONJ
arestyrurj-175	126	7	secondary	secondary	ADJ
arestyrurj-175	126	8	transcription	transcription	NOUN
arestyrurj-175	126	9	factors	factor	NOUN
arestyrurj-175	126	10	could	could	AUX
arestyrurj-175	126	11	be	be	AUX
arestyrurj-175	126	12	examined	examine	VERB
arestyrurj-175	126	13	using	use	VERB
arestyrurj-175	126	14	protein	protein	NOUN
arestyrurj-175	126	15	immunoprecipitation	immunoprecipitation	NOUN
arestyrurj-175	126	16	assays	assay	NOUN
arestyrurj-175	126	17	.	.	PUNCT
arestyrurj-175	127	1	additional	additional	ADJ
arestyrurj-175	127	2	investigations	investigation	NOUN
arestyrurj-175	127	3	can	can	AUX
arestyrurj-175	127	4	be	be	AUX
arestyrurj-175	127	5	conducted	conduct	VERB
arestyrurj-175	127	6	using	use	VERB
arestyrurj-175	127	7	intestinal	intestinal	ADJ
arestyrurj-175	127	8	organoid	organoid	NOUN
arestyrurj-175	127	9	models	model	NOUN
arestyrurj-175	127	10	.	.	PUNCT
arestyrurj-175	128	1	by	by	ADP
arestyrurj-175	128	2	knocking	knock	VERB
arestyrurj-175	128	3	out	out	ADP
arestyrurj-175	128	4	secondary	secondary	ADJ
arestyrurj-175	128	5	transcription	transcription	NOUN
arestyrurj-175	128	6	factors	factor	NOUN
arestyrurj-175	128	7	in	in	ADP
arestyrurj-175	128	8	intestinal	intestinal	ADJ
arestyrurj-175	128	9	organoids	organoid	NOUN
arestyrurj-175	128	10	,	,	PUNCT
arestyrurj-175	128	11	the	the	DET
arestyrurj-175	128	12	role	role	NOUN
arestyrurj-175	128	13	of	of	ADP
arestyrurj-175	128	14	these	these	DET
arestyrurj-175	128	15	factors	factor	NOUN
arestyrurj-175	128	16	in	in	ADP
arestyrurj-175	128	17	vdr	vdr	NOUN
arestyrurj-175	128	18	-	-	PUNCT
arestyrurj-175	128	19	mediated	mediate	VERB
arestyrurj-175	128	20	regulation	regulation	NOUN
arestyrurj-175	128	21	of	of	ADP
arestyrurj-175	128	22	gene	gene	NOUN
arestyrurj-175	128	23	expression	expression	NOUN
arestyrurj-175	128	24	could	could	AUX
arestyrurj-175	128	25	be	be	AUX
arestyrurj-175	128	26	determined	determine	VERB
arestyrurj-175	128	27	.	.	PUNCT
arestyrurj-175	129	1	such	such	ADJ
arestyrurj-175	129	2	investigations	investigation	NOUN
arestyrurj-175	129	3	would	would	AUX
arestyrurj-175	129	4	ad	ad	VERB
arestyrurj-175	129	5	vance	vance	NOUN
arestyrurj-175	129	6	our	our	PRON
arestyrurj-175	129	7	understanding	understanding	NOUN
arestyrurj-175	129	8	of	of	ADP
arestyrurj-175	129	9	vdr	vdr	NOUN
arestyrurj-175	129	10	’s	’s	PART
arestyrurj-175	129	11	role	role	NOUN
arestyrurj-175	129	12	in	in	ADP
arestyrurj-175	129	13	intestinal	intestinal	ADJ
arestyrurj-175	129	14	health	health	NOUN
arestyrurj-175	129	15	and	and	CCONJ
arestyrurj-175	129	16	diseases	disease	NOUN
arestyrurj-175	129	17	,	,	PUNCT
arestyrurj-175	129	18	including	include	VERB
arestyrurj-175	129	19	colorectal	colorectal	ADJ
arestyrurj-175	129	20	cancers	cancer	NOUN
arestyrurj-175	129	21	,	,	PUNCT
arestyrurj-175	129	22	and	and	CCONJ
arestyrurj-175	129	23	possibly	possibly	ADV
arestyrurj-175	129	24	offer	offer	VERB
arestyrurj-175	129	25	new	new	ADJ
arestyrurj-175	129	26	treatments	treatment	NOUN
arestyrurj-175	129	27	for	for	ADP
arestyrurj-175	129	28	those	those	PRON
arestyrurj-175	129	29	affected	affect	VERB
arestyrurj-175	129	30	by	by	ADP
arestyrurj-175	129	31	these	these	DET
arestyrurj-175	129	32	conditions	condition	NOUN
arestyrurj-175	129	33	.	.	PUNCT
arestyrurj-175	130	1	5	5	NUM
arestyrurj-175	130	2	data	datum	NOUN
arestyrurj-175	130	3	&	&	CCONJ
arestyrurj-175	130	4	source	source	PROPN
arestyrurj-175	130	5	code	code	NOUN
arestyrurj-175	130	6	access	access	NOUN
arestyrurj-175	130	7	the	the	DET
arestyrurj-175	130	8	complete	complete	ADJ
arestyrurj-175	130	9	data	datum	NOUN
arestyrurj-175	130	10	collected	collect	VERB
arestyrurj-175	130	11	in	in	ADP
arestyrurj-175	130	12	this	this	DET
arestyrurj-175	130	13	investigation	investigation	NOUN
arestyrurj-175	130	14	are	be	AUX
arestyrurj-175	130	15	available	available	ADJ
arestyrurj-175	130	16	upon	upon	SCONJ
arestyrurj-175	130	17	request	request	NOUN
arestyrurj-175	130	18	.	.	PUNCT
arestyrurj-175	131	1	this	this	DET
arestyrurj-175	131	2	investigation	investigation	NOUN
arestyrurj-175	131	3	did	do	AUX
arestyrurj-175	131	4	not	not	PART
arestyrurj-175	131	5	involve	involve	VERB
arestyrurj-175	131	6	human	human	ADJ
arestyrurj-175	131	7	subjects	subject	NOUN
arestyrurj-175	131	8	,	,	PUNCT
arestyrurj-175	131	9	and	and	CCONJ
arestyrurj-175	131	10	these	these	DET
arestyrurj-175	131	11	data	datum	NOUN
arestyrurj-175	131	12	do	do	AUX
arestyrurj-175	131	13	not	not	PART
arestyrurj-175	131	14	include	include	VERB
arestyrurj-175	131	15	hipaa	hipaa	NOUN
arestyrurj-175	131	16	-	-	PUNCT
arestyrurj-175	131	17	protected	protect	VERB
arestyrurj-175	131	18	health	health	NOUN
arestyrurj-175	131	19	information	information	NOUN
arestyrurj-175	131	20	.	.	PUNCT
arestyrurj-175	132	1	the	the	DET
arestyrurj-175	132	2	source	source	NOUN
arestyrurj-175	132	3	code	code	NOUN
arestyrurj-175	132	4	for	for	ADP
arestyrurj-175	132	5	the	the	DET
arestyrurj-175	132	6	analysis	analysis	NOUN
arestyrurj-175	132	7	pipeline	pipeline	NOUN
arestyrurj-175	132	8	used	use	VERB
arestyrurj-175	132	9	in	in	ADP
arestyrurj-175	132	10	this	this	DET
arestyrurj-175	132	11	investigation	investigation	NOUN
arestyrurj-175	132	12	is	be	AUX
arestyrurj-175	132	13	available	available	ADJ
arestyrurj-175	132	14	upon	upon	SCONJ
arestyrurj-175	132	15	request	request	NOUN
arestyrurj-175	132	16	.	.	PUNCT
arestyrurj-175	133	1	the	the	DET
arestyrurj-175	133	2	following	follow	VERB
arestyrurj-175	133	3	programs	program	NOUN
arestyrurj-175	133	4	were	be	AUX
arestyrurj-175	133	5	used	use	VERB
arestyrurj-175	133	6	in	in	ADP
arestyrurj-175	133	7	the	the	DET
arestyrurj-175	133	8	analysis	analysis	NOUN
arestyrurj-175	133	9	pipeline	pipeline	NOUN
arestyrurj-175	133	10	:	:	PUNCT
arestyrurj-175	133	11	ngmerge	ngmerge	NOUN
arestyrurj-175	133	12	v0.3,[9	v0.3,[9	NOUN
arestyrurj-175	133	13	]	]	PUNCT
arestyrurj-175	133	14	bowtie2	bowtie2	PROPN
arestyrurj-175	133	15	v2.2.6,[10	v2.2.6,[10	CCONJ
arestyrurj-175	133	16	]	]	X
arestyrurj-175	133	17	samtools	samtools	PROPN
arestyrurj-175	133	18	v0.1.19,[13	v0.1.19,[13	PROPN
arestyrurj-175	133	19	]	]	PUNCT
arestyrurj-175	133	20	deeptools	deeptool	VERB
arestyrurj-175	133	21	v3.3.0,[18	v3.3.0,[18	PRON
arestyrurj-175	133	22	]	]	PUNCT
arestyrurj-175	133	23	macs	macs	PROPN
arestyrurj-175	133	24	v2.1.0,[22	v2.1.0,[22	PROPN
arestyrurj-175	133	25	]	]	PUNCT
arestyrurj-175	133	26	bedtools	bedtool	NOUN
arestyrurj-175	133	27	v2.17.0,[17	v2.17.0,[17	VERB
arestyrurj-175	133	28	]	]	PUNCT
arestyrurj-175	133	29	cistrome	cistrome	PROPN
arestyrurj-175	133	30	v0.6.7,[14	v0.6.7,[14	PROPN
arestyrurj-175	133	31	]	]	PUNCT
arestyrurj-175	133	32	picard	picard	PROPN
arestyrurj-175	133	33	v2.18.27,[3	v2.18.27,[3	PROPN
arestyrurj-175	133	34	]	]	PUNCT
arestyrurj-175	133	35	diffbind	diffbind	ADJ
arestyrurj-175	133	36	v1.16.3,[19	v1.16.3,[19	NOUN
arestyrurj-175	133	37	]	]	X
arestyrurj-175	133	38	homer	homer	NOUN
arestyrurj-175	133	39	v4.8.3∎	v4.8.3∎	VERB
arestyrurj-175	133	40	6	6	NUM
arestyrurj-175	133	41	references	reference	NOUN
arestyrurj-175	133	42	[	[	X
arestyrurj-175	133	43	1	1	NUM
arestyrurj-175	133	44	]	]	PUNCT
arestyrurj-175	133	45	amemiya	amemiya	NOUN
arestyrurj-175	133	46	,	,	PUNCT
arestyrurj-175	133	47	h.	h.	PROPN
arestyrurj-175	133	48	m.	m.	PROPN
arestyrurj-175	133	49	,	,	PUNCT
arestyrurj-175	133	50	kundaje	kundaje	PROPN
arestyrurj-175	133	51	,	,	PUNCT
arestyrurj-175	133	52	a.	a.	PROPN
arestyrurj-175	133	53	,	,	PUNCT
arestyrurj-175	133	54	&	&	CCONJ
arestyrurj-175	133	55	boyle	boyle	PROPN
arestyrurj-175	133	56	,	,	PUNCT
arestyrurj-175	133	57	a.	a.	NOUN
arestyrurj-175	133	58	p.	p.	NOUN
arestyrurj-175	133	59	(	(	PUNCT
arestyrurj-175	133	60	2019	2019	NUM
arestyrurj-175	133	61	)	)	PUNCT
arestyrurj-175	133	62	.	.	PUNCT
arestyrurj-175	134	1	the	the	DET
arestyrurj-175	134	2	encode	encode	ADJ
arestyrurj-175	134	3	blacklist	blacklist	NOUN
arestyrurj-175	134	4	:	:	PUNCT
arestyrurj-175	134	5	identification	identification	NOUN
arestyrurj-175	134	6	of	of	ADP
arestyrurj-175	134	7	problematic	problematic	ADJ
arestyrurj-175	134	8	regions	region	NOUN
arestyrurj-175	134	9	of	of	ADP
arestyrurj-175	134	10	the	the	DET
arestyrurj-175	134	11	genome	genome	NOUN
arestyrurj-175	134	12	.	.	PUNCT
arestyrurj-175	135	1	scientific	scientific	ADJ
arestyrurj-175	135	2	reports	report	NOUN
arestyrurj-175	135	3	,	,	PUNCT
arestyrurj-175	135	4	9(1	9(1	NUM
arestyrurj-175	135	5	)	)	PUNCT
arestyrurj-175	135	6	,	,	PUNCT
arestyrurj-175	135	7	9354	9354	NUM
arestyrurj-175	135	8	.	.	PUNCT
arestyrurj-175	136	1	[	[	X
arestyrurj-175	136	2	2	2	NUM
arestyrurj-175	136	3	]	]	PUNCT
arestyrurj-175	136	4	blausen	blausen	ADJ
arestyrurj-175	136	5	medical	medical	ADJ
arestyrurj-175	136	6	communications	communication	NOUN
arestyrurj-175	136	7	.	.	PUNCT
arestyrurj-175	137	1	(	(	PUNCT
arestyrurj-175	137	2	2014	2014	NUM
arestyrurj-175	137	3	)	)	PUNCT
arestyrurj-175	137	4	.	.	PUNCT
arestyrurj-175	138	1	blausen	blausen	VERB
arestyrurj-175	138	2	0432	0432	NUM
arestyrurj-175	138	3	gastrointestinalsystem.png	gastrointestinalsystem.png	ADJ
arestyrurj-175	138	4	.	.	PUNCT
arestyrurj-175	138	5	https://commons.wikimedia.org/wiki/file:blausen_0432_gastrointestinalsystem.png	https://commons.wikimedia.org/wiki/file:blausen_0432_gastrointestinalsystem.png	PROPN
arestyrurj-175	139	1	[	[	X
arestyrurj-175	139	2	3	3	NUM
arestyrurj-175	139	3	]	]	X
arestyrurj-175	139	4	broad	broad	PROPN
arestyrurj-175	139	5	institute	institute	PROPN
arestyrurj-175	139	6	.	.	PUNCT
arestyrurj-175	140	1	picard	picard	NOUN
arestyrurj-175	140	2	.	.	PUNCT
arestyrurj-175	141	1	https://broadinstitute.github.io/picard	https://broadinstitute.github.io/picard	PROPN
arestyrurj-175	142	1	[	[	X
arestyrurj-175	142	2	4	4	NUM
arestyrurj-175	142	3	]	]	X
arestyrurj-175	142	4	chen	chen	PROPN
arestyrurj-175	142	5	,	,	PUNCT
arestyrurj-175	142	6	l.	l.	PROPN
arestyrurj-175	142	7	,	,	PUNCT
arestyrurj-175	142	8	toke	toke	ADV
arestyrurj-175	142	9	,	,	PUNCT
arestyrurj-175	142	10	n.	n.	PROPN
arestyrurj-175	142	11	h.	h.	PROPN
arestyrurj-175	142	12	,	,	PUNCT
arestyrurj-175	142	13	luo	luo	PROPN
arestyrurj-175	142	14	,	,	PUNCT
arestyrurj-175	142	15	s.	s.	PROPN
arestyrurj-175	142	16	,	,	PUNCT
arestyrurj-175	142	17	vasoya	vasoya	PROPN
arestyrurj-175	142	18	,	,	PUNCT
arestyrurj-175	142	19	r.	r.	PROPN
arestyrurj-175	142	20	p.	p.	PROPN
arestyrurj-175	142	21	,	,	PUNCT
arestyrurj-175	142	22	fullem	fullem	PROPN
arestyrurj-175	142	23	,	,	PUNCT
arestyrurj-175	142	24	r.	r.	PROPN
arestyrurj-175	142	25	l.	l.	PROPN
arestyrurj-175	142	26	,	,	PUNCT
arestyrurj-175	142	27	parthasarathy	parthasarathy	PROPN
arestyrurj-175	142	28	,	,	PUNCT
arestyrurj-175	142	29	a.	a.	NOUN
arestyrurj-175	142	30	,	,	PUNCT
arestyrurj-175	142	31	perekatt	perekatt	NOUN
arestyrurj-175	142	32	,	,	PUNCT
arestyrurj-175	142	33	a.	a.	NOUN
arestyrurj-175	142	34	o.	o.	PROPN
arestyrurj-175	142	35	,	,	PUNCT
arestyrurj-175	142	36	&	&	CCONJ
arestyrurj-175	142	37	verzi	verzi	PROPN
arestyrurj-175	142	38	,	,	PUNCT
arestyrurj-175	142	39	m.	m.	NOUN
arestyrurj-175	142	40	p.	p.	NOUN
arestyrurj-175	142	41	(	(	PUNCT
arestyrurj-175	142	42	2019	2019	NUM
arestyrurj-175	142	43	)	)	PUNCT
arestyrurj-175	142	44	.	.	PUNCT
arestyrurj-175	143	1	a	a	DET
arestyrurj-175	143	2	reinforcing	reinforce	VERB
arestyrurj-175	143	3	hnf4	hnf4	PROPN
arestyrurj-175	143	4	-	-	PUNCT
arestyrurj-175	143	5	smad4	smad4	NOUN
arestyrurj-175	143	6	feed	feed	NOUN
arestyrurj-175	143	7	-	-	PUNCT
arestyrurj-175	143	8	forward	forward	NOUN
arestyrurj-175	143	9	module	module	NOUN
arestyrurj-175	143	10	stabilizes	stabilize	VERB
arestyrurj-175	143	11	enterocyte	enterocyte	NOUN
arestyrurj-175	143	12	identity	identity	NOUN
arestyrurj-175	143	13	.	.	PUNCT
arestyrurj-175	144	1	nature	nature	NOUN
arestyrurj-175	144	2	genetics	genetic	NOUN
arestyrurj-175	144	3	,	,	PUNCT
arestyrurj-175	144	4	51	51	NUM
arestyrurj-175	144	5	,	,	PUNCT
arestyrurj-175	144	6	777–785	777–785	NUM
arestyrurj-175	144	7	.	.	PUNCT
arestyrurj-175	145	1	[	[	X
arestyrurj-175	145	2	5	5	NUM
arestyrurj-175	145	3	]	]	PUNCT
arestyrurj-175	145	4	crosnier	crosnier	NOUN
arestyrurj-175	145	5	,	,	PUNCT
arestyrurj-175	145	6	c.	c.	NOUN
arestyrurj-175	145	7	,	,	PUNCT
arestyrurj-175	145	8	stamataki	stamataki	NOUN
arestyrurj-175	145	9	,	,	PUNCT
arestyrurj-175	145	10	s.	s.	PROPN
arestyrurj-175	145	11	,	,	PUNCT
arestyrurj-175	145	12	&	&	CCONJ
arestyrurj-175	145	13	lewis	lewis	PROPN
arestyrurj-175	145	14	,	,	PUNCT
arestyrurj-175	145	15	j.	j.	PROPN
arestyrurj-175	145	16	(	(	PUNCT
arestyrurj-175	145	17	2006	2006	NUM
arestyrurj-175	145	18	)	)	PUNCT
arestyrurj-175	145	19	.	.	PUNCT
arestyrurj-175	146	1	organizing	organize	VERB
arestyrurj-175	146	2	cell	cell	NOUN
arestyrurj-175	146	3	renewal	renewal	NOUN
arestyrurj-175	146	4	in	in	ADP
arestyrurj-175	146	5	the	the	DET
arestyrurj-175	146	6	intestine	intestine	NOUN
arestyrurj-175	146	7	:	:	PUNCT
arestyrurj-175	146	8	stem	stem	NOUN
arestyrurj-175	146	9	cells	cell	NOUN
arestyrurj-175	146	10	,	,	PUNCT
arestyrurj-175	146	11	signals	signal	NOUN
arestyrurj-175	146	12	and	and	CCONJ
arestyrurj-175	146	13	combinatorial	combinatorial	ADJ
arestyrurj-175	146	14	control	control	NOUN
arestyrurj-175	146	15	.	.	PUNCT
arestyrurj-175	147	1	nature	nature	NOUN
arestyrurj-175	147	2	reviews	review	VERB
arestyrurj-175	147	3	genetics	genetic	NOUN
arestyrurj-175	147	4	,	,	PUNCT
arestyrurj-175	147	5	7(5	7(5	NUM
arestyrurj-175	147	6	)	)	PUNCT
arestyrurj-175	147	7	,	,	PUNCT
arestyrurj-175	147	8	349–359	349–359	NUM
arestyrurj-175	147	9	.	.	PUNCT
arestyrurj-175	148	1	[	[	X
arestyrurj-175	148	2	6	6	NUM
arestyrurj-175	148	3	]	]	X
arestyrurj-175	148	4	de	de	X
arestyrurj-175	148	5	santa	santa	PROPN
arestyrurj-175	148	6	barbara	barbara	PROPN
arestyrurj-175	148	7	,	,	PUNCT
arestyrurj-175	148	8	p.	p.	PROPN
arestyrurj-175	148	9	,	,	PUNCT
arestyrurj-175	148	10	van	van	PROPN
arestyrurj-175	148	11	den	den	PROPN
arestyrurj-175	148	12	brink	brink	NOUN
arestyrurj-175	148	13	,	,	PUNCT
arestyrurj-175	148	14	g.	g.	PROPN
arestyrurj-175	148	15	r.	r.	PROPN
arestyrurj-175	148	16	,	,	PUNCT
arestyrurj-175	148	17	&	&	CCONJ
arestyrurj-175	148	18	roberts	roberts	PROPN
arestyrurj-175	148	19	,	,	PUNCT
arestyrurj-175	148	20	d.	d.	PROPN
arestyrurj-175	148	21	j.	j.	PROPN
arestyrurj-175	148	22	(	(	PUNCT
arestyrurj-175	148	23	2003	2003	NUM
arestyrurj-175	148	24	)	)	PUNCT
arestyrurj-175	148	25	.	.	PUNCT
arestyrurj-175	149	1	development	development	NOUN
arestyrurj-175	149	2	and	and	CCONJ
arestyrurj-175	149	3	differentiation	differentiation	NOUN
arestyrurj-175	149	4	of	of	ADP
arestyrurj-175	149	5	the	the	DET
arestyrurj-175	149	6	intestinal	intestinal	ADJ
arestyrurj-175	149	7	epithelium	epithelium	NOUN
arestyrurj-175	149	8	.	.	PUNCT
arestyrurj-175	150	1	cellular	cellular	ADJ
arestyrurj-175	150	2	and	and	CCONJ
arestyrurj-175	150	3	molecular	molecular	ADJ
arestyrurj-175	150	4	life	life	NOUN
arestyrurj-175	150	5	sciences	science	NOUN
arestyrurj-175	150	6	,	,	PUNCT
arestyrurj-175	150	7	60(7	60(7	NUM
arestyrurj-175	150	8	)	)	PUNCT
arestyrurj-175	150	9	,	,	PUNCT
arestyrurj-175	150	10	1322	1322	NUM
arestyrurj-175	150	11	–	–	PUNCT
arestyrurj-175	150	12	1332	1332	NUM
arestyrurj-175	150	13	.	.	PUNCT
arestyrurj-175	151	1	[	[	X
arestyrurj-175	151	2	7	7	NUM
arestyrurj-175	151	3	]	]	X
arestyrurj-175	151	4	dhawan	dhawan	NOUN
arestyrurj-175	151	5	,	,	PUNCT
arestyrurj-175	151	6	p.	p.	NOUN
arestyrurj-175	151	7	,	,	PUNCT
arestyrurj-175	151	8	veldurthy	veldurthy	ADJ
arestyrurj-175	151	9	,	,	PUNCT
arestyrurj-175	151	10	v.	v.	PROPN
arestyrurj-175	151	11	,	,	PUNCT
arestyrurj-175	151	12	yehia	yehia	PROPN
arestyrurj-175	151	13	,	,	PUNCT
arestyrurj-175	151	14	g.	g.	PROPN
arestyrurj-175	151	15	,	,	PUNCT
arestyrurj-175	151	16	hsaio	hsaio	PROPN
arestyrurj-175	151	17	,	,	PUNCT
arestyrurj-175	151	18	c.	c.	PROPN
arestyrurj-175	151	19	,	,	PUNCT
arestyrurj-175	151	20	porta	porta	PROPN
arestyrurj-175	151	21	,	,	PUNCT
arestyrurj-175	151	22	a.	a.	PROPN
arestyrurj-175	151	23	,	,	PUNCT
arestyrurj-175	151	24	kim	kim	PROPN
arestyrurj-175	151	25	,	,	PUNCT
arestyrurj-175	151	26	k.	k.	PROPN
arestyrurj-175	151	27	,	,	PUNCT
arestyrurj-175	151	28	patel	patel	PROPN
arestyrurj-175	151	29	,	,	PUNCT
arestyrurj-175	151	30	n.	n.	PROPN
arestyrurj-175	151	31	,	,	PUNCT
arestyrurj-175	151	32	lieben	lieben	PROPN
arestyrurj-175	151	33	,	,	PUNCT
arestyrurj-175	151	34	l.	l.	PROPN
arestyrurj-175	151	35	,	,	PUNCT
arestyrurj-175	151	36	verlinden	verlinden	PROPN
arestyrurj-175	151	37	,	,	PUNCT
arestyrurj-175	151	38	l.	l.	PROPN
arestyrurj-175	151	39	,	,	PUNCT
arestyrurj-175	151	40	carmeliet	carmeliet	PROPN
arestyrurj-175	151	41	,	,	PUNCT
arestyrurj-175	151	42	g.	g.	PROPN
arestyrurj-175	151	43	,	,	PUNCT
arestyrurj-175	151	44	&	&	CCONJ
arestyrurj-175	151	45	christakos	christakos	PROPN
arestyrurj-175	151	46	,	,	PUNCT
arestyrurj-175	151	47	s.	s.	PROPN
arestyrurj-175	151	48	(	(	PUNCT
arestyrurj-175	151	49	2017	2017	NUM
arestyrurj-175	151	50	)	)	PUNCT
arestyrurj-175	151	51	.	.	PUNCT
arestyrurj-175	152	1	transgenic	transgenic	NOUN
arestyrurj-175	152	2	expression	expression	NOUN
arestyrurj-175	152	3	of	of	ADP
arestyrurj-175	152	4	the	the	DET
arestyrurj-175	152	5	vitamin	vitamin	NOUN
arestyrurj-175	152	6	d	d	NOUN
arestyrurj-175	152	7	receptor	receptor	NOUN
arestyrurj-175	152	8	restricted	restrict	VERB
arestyrurj-175	152	9	to	to	ADP
arestyrurj-175	152	10	the	the	DET
arestyrurj-175	152	11	ileum	ileum	NOUN
arestyrurj-175	152	12	,	,	PUNCT
arestyrurj-175	152	13	cecum	cecum	NOUN
arestyrurj-175	152	14	,	,	PUNCT
arestyrurj-175	152	15	and	and	CCONJ
arestyrurj-175	152	16	colon	colon	NOUN
arestyrurj-175	152	17	of	of	ADP
arestyrurj-175	152	18	vitamin	vitamin	NOUN
arestyrurj-175	152	19	d	d	NOUN
arestyrurj-175	152	20	receptor	receptor	NOUN
arestyrurj-175	152	21	knockout	knockout	NOUN
arestyrurj-175	152	22	mice	mice	NOUN
arestyrurj-175	152	23	rescues	rescue	NOUN
arestyrurj-175	152	24	vitamin	vitamin	NOUN
arestyrurj-175	152	25	d	d	NOUN
arestyrurj-175	152	26	receptor	receptor	NOUN
arestyrurj-175	152	27	–	–	PUNCT
arestyrurj-175	152	28	dependent	dependent	ADJ
arestyrurj-175	152	29	rickets	ricket	NOUN
arestyrurj-175	152	30	.	.	PUNCT
arestyrurj-175	153	1	endocrinology	endocrinology	NOUN
arestyrurj-175	153	2	,	,	PUNCT
arestyrurj-175	153	3	158(11	158(11	NUM
arestyrurj-175	153	4	)	)	PUNCT
arestyrurj-175	153	5	,	,	PUNCT
arestyrurj-175	153	6	3792–3804	3792–3804	NUM
arestyrurj-175	153	7	.	.	PUNCT
arestyrurj-175	154	1	[	[	X
arestyrurj-175	154	2	8	8	NUM
arestyrurj-175	154	3	]	]	SYM
arestyrurj-175	154	4	eloranta	eloranta	PROPN
arestyrurj-175	154	5	,	,	PUNCT
arestyrurj-175	154	6	j.	j.	PROPN
arestyrurj-175	154	7	j.	j.	PROPN
arestyrurj-175	154	8	,	,	PUNCT
arestyrurj-175	154	9	wenger	wenger	PROPN
arestyrurj-175	154	10	,	,	PUNCT
arestyrurj-175	154	11	c.	c.	PROPN
arestyrurj-175	154	12	,	,	PUNCT
arestyrurj-175	154	13	mwinyi	mwinyi	PROPN
arestyrurj-175	154	14	,	,	PUNCT
arestyrurj-175	154	15	j.	j.	PROPN
arestyrurj-175	154	16	,	,	PUNCT
arestyrurj-175	154	17	hiller	hiller	PROPN
arestyrurj-175	154	18	,	,	PUNCT
arestyrurj-175	154	19	c.	c.	PROPN
arestyrurj-175	154	20	,	,	PUNCT
arestyrurj-175	154	21	gubler	gubler	PROPN
arestyrurj-175	154	22	,	,	PUNCT
arestyrurj-175	154	23	c.	c.	PROPN
arestyrurj-175	154	24	,	,	PUNCT
arestyrurj-175	154	25	vavricka	vavricka	PROPN
arestyrurj-175	154	26	,	,	PUNCT
arestyrurj-175	154	27	s.	s.	PROPN
arestyrurj-175	154	28	r.	r.	PROPN
arestyrurj-175	154	29	,	,	PUNCT
arestyrurj-175	154	30	fried	fry	VERB
arestyrurj-175	154	31	,	,	PUNCT
arestyrurj-175	154	32	m.	m.	NOUN
arestyrurj-175	154	33	,	,	PUNCT
arestyrurj-175	154	34	kullak	kullak	NOUN
arestyrurj-175	154	35	-	-	NOUN
arestyrurj-175	154	36	ublick	ublick	PROPN
arestyrurj-175	154	37	,	,	PUNCT
arestyrurj-175	154	38	g.	g.	PROPN
arestyrurj-175	154	39	a.	a.	PROPN
arestyrurj-175	154	40	,	,	PUNCT
arestyrurj-175	154	41	&	&	CCONJ
arestyrurj-175	154	42	swiss	swiss	PROPN
arestyrurj-175	154	43	ibd	ibd	PROPN
arestyrurj-175	154	44	cohort	cohort	NOUN
arestyrurj-175	154	45	study	study	NOUN
arestyrurj-175	154	46	group	group	NOUN
arestyrurj-175	154	47	.	.	PUNCT
arestyrurj-175	155	1	(	(	PUNCT
arestyrurj-175	155	2	2011	2011	NUM
arestyrurj-175	155	3	)	)	PUNCT
arestyrurj-175	155	4	.	.	PUNCT
arestyrurj-175	156	1	association	association	NOUN
arestyrurj-175	156	2	of	of	ADP
arestyrurj-175	156	3	a	a	DET
arestyrurj-175	156	4	common	common	ADJ
arestyrurj-175	156	5	vitamin	vitamin	NOUN
arestyrurj-175	156	6	d	d	NOUN
arestyrurj-175	156	7	-	-	ADJ
arestyrurj-175	156	8	binding	bind	VERB
arestyrurj-175	156	9	protein	protein	NOUN
arestyrurj-175	156	10	polymorphism	polymorphism	NOUN
arestyrurj-175	156	11	with	with	ADP
arestyrurj-175	156	12	inflammatory	inflammatory	ADJ
arestyrurj-175	156	13	bowel	bowel	NOUN
arestyrurj-175	156	14	disease	disease	NOUN
arestyrurj-175	156	15	.	.	PUNCT
arestyrurj-175	157	1	pharmacogenetics	pharmacogenetic	NOUN
arestyrurj-175	157	2	and	and	CCONJ
arestyrurj-175	157	3	genomics	genomic	NOUN
arestyrurj-175	157	4	,	,	PUNCT
arestyrurj-175	157	5	21(9	21(9	NOUN
arestyrurj-175	157	6	)	)	PUNCT
arestyrurj-175	157	7	,	,	PUNCT
arestyrurj-175	157	8	559–564	559–564	NUM
arestyrurj-175	157	9	.	.	PUNCT
arestyrurj-175	158	1	[	[	X
arestyrurj-175	158	2	9	9	NUM
arestyrurj-175	158	3	]	]	PUNCT
arestyrurj-175	158	4	gaspar	gaspar	NOUN
arestyrurj-175	158	5	,	,	PUNCT
arestyrurj-175	158	6	j.	j.	PROPN
arestyrurj-175	158	7	m.	m.	PROPN
arestyrurj-175	158	8	(	(	PUNCT
arestyrurj-175	158	9	2018	2018	NUM
arestyrurj-175	158	10	)	)	PUNCT
arestyrurj-175	158	11	.	.	PUNCT
arestyrurj-175	159	1	ngmerge	ngmerge	NOUN
arestyrurj-175	159	2	:	:	PUNCT
arestyrurj-175	159	3	merging	merge	VERB
arestyrurj-175	159	4	paired	pair	VERB
arestyrurj-175	159	5	-	-	PUNCT
arestyrurj-175	159	6	end	end	NOUN
arestyrurj-175	159	7	reads	read	NOUN
arestyrurj-175	159	8	via	via	ADP
arestyrurj-175	159	9	novel	novel	NOUN
arestyrurj-175	159	10	empirically	empirically	ADV
arestyrurj-175	159	11	-	-	PUNCT
arestyrurj-175	159	12	derived	derive	VERB
arestyrurj-175	159	13	models	model	NOUN
arestyrurj-175	159	14	of	of	ADP
arestyrurj-175	159	15	sequencing	sequence	VERB
arestyrurj-175	159	16	errors	error	NOUN
arestyrurj-175	159	17	.	.	PUNCT
arestyrurj-175	160	1	bmc	bmc	ADJ
arestyrurj-175	160	2	bioinformatics	bioinformatics	PROPN
arestyrurj-175	160	3	,	,	PUNCT
arestyrurj-175	160	4	19	19	NUM
arestyrurj-175	160	5	,	,	PUNCT
arestyrurj-175	160	6	536	536	NUM
arestyrurj-175	160	7	.	.	PUNCT
arestyrurj-175	161	1	https://commons.wikimedia.org/wiki/file:blausen_0432_gastrointestinalsystem.png	https://commons.wikimedia.org/wiki/file:blausen_0432_gastrointestinalsystem.png	PROPN
arestyrurj-175	161	2	https://commons.wikimedia.org/wiki/file:blausen_0432_gastrointestinalsystem.png	https://commons.wikimedia.org/wiki/file:blausen_0432_gastrointestinalsystem.png	PROPN
arestyrurj-175	161	3	https://broadinstitute.github.io/picard	https://broadinstitute.github.io/picard	PROPN
arestyrurj-175	161	4	aresty	aresty	ADJ
arestyrurj-175	161	5	rutgers	rutgers	PROPN
arestyrurj-175	161	6	undergraduate	undergraduate	PROPN
arestyrurj-175	161	7	research	research	PROPN
arestyrurj-175	161	8	journal	journal	PROPN
arestyrurj-175	161	9	,	,	PUNCT
arestyrurj-175	161	10	volume	volume	NOUN
arestyrurj-175	161	11	i	i	PRON
arestyrurj-175	161	12	,	,	PUNCT
arestyrurj-175	161	13	issue	issue	VERB
arestyrurj-175	161	14	iii	iii	NOUN
arestyrurj-175	162	1	[	[	X
arestyrurj-175	162	2	10	10	NUM
arestyrurj-175	162	3	]	]	X
arestyrurj-175	162	4	langmead	langmead	PROPN
arestyrurj-175	162	5	,	,	PUNCT
arestyrurj-175	162	6	b.	b.	PROPN
arestyrurj-175	162	7	,	,	PUNCT
arestyrurj-175	162	8	&	&	CCONJ
arestyrurj-175	162	9	salzberg	salzberg	PROPN
arestyrurj-175	162	10	,	,	PUNCT
arestyrurj-175	162	11	s.	s.	PROPN
arestyrurj-175	162	12	l.	l.	PROPN
arestyrurj-175	162	13	(	(	PUNCT
arestyrurj-175	162	14	2012	2012	NUM
arestyrurj-175	162	15	)	)	PUNCT
arestyrurj-175	162	16	.	.	PUNCT
arestyrurj-175	163	1	fast	fast	ADJ
arestyrurj-175	163	2	gapped	gapped	NOUN
arestyrurj-175	163	3	-	-	PUNCT
arestyrurj-175	163	4	read	read	NOUN
arestyrurj-175	163	5	alignment	alignment	NOUN
arestyrurj-175	163	6	with	with	ADP
arestyrurj-175	163	7	bowtie	bowtie	NOUN
arestyrurj-175	163	8	2	2	NUM
arestyrurj-175	163	9	.	.	PUNCT
arestyrurj-175	163	10	nature	nature	NOUN
arestyrurj-175	163	11	methods	method	NOUN
arestyrurj-175	163	12	,	,	PUNCT
arestyrurj-175	163	13	9(4	9(4	NUM
arestyrurj-175	163	14	)	)	PUNCT
arestyrurj-175	163	15	,	,	PUNCT
arestyrurj-175	163	16	357–359	357–359	NUM
arestyrurj-175	163	17	.	.	PUNCT
arestyrurj-175	164	1	[	[	X
arestyrurj-175	164	2	11	11	NUM
arestyrurj-175	164	3	]	]	X
arestyrurj-175	164	4	larriba	larriba	PROPN
arestyrurj-175	164	5	,	,	PUNCT
arestyrurj-175	164	6	m.	m.	NOUN
arestyrurj-175	164	7	j.	j.	PROPN
arestyrurj-175	164	8	,	,	PUNCT
arestyrurj-175	164	9	ordóñez	ordóñez	NOUN
arestyrurj-175	164	10	-	-	PUNCT
arestyrurj-175	164	11	morán	morán	NOUN
arestyrurj-175	164	12	,	,	PUNCT
arestyrurj-175	164	13	p.	p.	NOUN
arestyrurj-175	164	14	,	,	PUNCT
arestyrurj-175	164	15	chicote	chicote	PROPN
arestyrurj-175	164	16	,	,	PUNCT
arestyrurj-175	164	17	i.	i.	PROPN
arestyrurj-175	164	18	,	,	PUNCT
arestyrurj-175	164	19	martín	martín	NOUN
arestyrurj-175	164	20	-	-	PUNCT
arestyrurj-175	164	21	fernández	fernández	PROPN
arestyrurj-175	164	22	,	,	PUNCT
arestyrurj-175	164	23	g.	g.	PROPN
arestyrurj-175	164	24	,	,	PUNCT
arestyrurj-175	164	25	puig	puig	PROPN
arestyrurj-175	164	26	,	,	PUNCT
arestyrurj-175	164	27	i.	i.	PROPN
arestyrurj-175	164	28	,	,	PUNCT
arestyrurj-175	164	29	muñoz	muñoz	PROPN
arestyrurj-175	164	30	,	,	PUNCT
arestyrurj-175	164	31	a.	a.	PROPN
arestyrurj-175	164	32	,	,	PUNCT
arestyrurj-175	164	33	&	&	CCONJ
arestyrurj-175	164	34	pálmer	pálmer	PROPN
arestyrurj-175	164	35	,	,	PUNCT
arestyrurj-175	164	36	h.	h.	PROPN
arestyrurj-175	164	37	g.	g.	PROPN
arestyrurj-175	164	38	(	(	PUNCT
arestyrurj-175	164	39	2011	2011	NUM
arestyrurj-175	164	40	)	)	PUNCT
arestyrurj-175	164	41	.	.	PUNCT
arestyrurj-175	165	1	vitamin	vitamin	NOUN
arestyrurj-175	165	2	d	d	NOUN
arestyrurj-175	165	3	receptor	receptor	NOUN
arestyrurj-175	165	4	deficiency	deficiency	NOUN
arestyrurj-175	165	5	enhances	enhance	VERB
arestyrurj-175	165	6	wnt	wnt	NOUN
arestyrurj-175	165	7	/	/	SYM
arestyrurj-175	165	8	β	β	NOUN
arestyrurj-175	165	9	-	-	ADJ
arestyrurj-175	165	10	catenin	catenin	ADJ
arestyrurj-175	165	11	signaling	signal	VERB
arestyrurj-175	165	12	and	and	CCONJ
arestyrurj-175	165	13	tumor	tumor	NOUN
arestyrurj-175	165	14	burden	burden	NOUN
arestyrurj-175	165	15	in	in	ADP
arestyrurj-175	165	16	colon	colon	NOUN
arestyrurj-175	165	17	cancer	cancer	NOUN
arestyrurj-175	165	18	.	.	PUNCT
arestyrurj-175	166	1	plos	plos	PROPN
arestyrurj-175	166	2	one	one	NUM
arestyrurj-175	166	3	,	,	PUNCT
arestyrurj-175	166	4	6(8	6(8	NUM
arestyrurj-175	166	5	)	)	PUNCT
arestyrurj-175	166	6	,	,	PUNCT
arestyrurj-175	166	7	e23524	e23524	NOUN
arestyrurj-175	166	8	.	.	PUNCT
arestyrurj-175	167	1	[	[	X
arestyrurj-175	167	2	12	12	NUM
arestyrurj-175	167	3	]	]	X
arestyrurj-175	167	4	lee	lee	PROPN
arestyrurj-175	167	5	,	,	PUNCT
arestyrurj-175	167	6	s.	s.	PROPN
arestyrurj-175	167	7	m.	m.	PROPN
arestyrurj-175	167	8	,	,	PUNCT
arestyrurj-175	167	9	riley	riley	PROPN
arestyrurj-175	167	10	,	,	PUNCT
arestyrurj-175	167	11	e.	e.	PROPN
arestyrurj-175	167	12	m.	m.	PROPN
arestyrurj-175	167	13	,	,	PUNCT
arestyrurj-175	167	14	meyer	meyer	PROPN
arestyrurj-175	167	15	,	,	PUNCT
arestyrurj-175	167	16	m.	m.	PROPN
arestyrurj-175	167	17	b.	b.	PROPN
arestyrurj-175	167	18	,	,	PUNCT
arestyrurj-175	167	19	benkusky	benkusky	PROPN
arestyrurj-175	167	20	,	,	PUNCT
arestyrurj-175	167	21	n.	n.	PROPN
arestyrurj-175	167	22	a.	a.	PROPN
arestyrurj-175	167	23	,	,	PUNCT
arestyrurj-175	167	24	plum	plum	NOUN
arestyrurj-175	167	25	,	,	PUNCT
arestyrurj-175	167	26	l.	l.	PROPN
arestyrurj-175	167	27	a.	a.	PROPN
arestyrurj-175	167	28	,	,	PUNCT
arestyrurj-175	167	29	deluca	deluca	PROPN
arestyrurj-175	167	30	,	,	PUNCT
arestyrurj-175	167	31	h.	h.	PROPN
arestyrurj-175	167	32	f.	f.	PROPN
arestyrurj-175	167	33	,	,	PUNCT
arestyrurj-175	167	34	&	&	CCONJ
arestyrurj-175	167	35	pike	pike	PROPN
arestyrurj-175	167	36	,	,	PUNCT
arestyrurj-175	167	37	j.	j.	PROPN
arestyrurj-175	167	38	w.	w.	PROPN
arestyrurj-175	167	39	(	(	PUNCT
arestyrurj-175	167	40	2015	2015	NUM
arestyrurj-175	167	41	)	)	PUNCT
arestyrurj-175	167	42	.	.	PUNCT
arestyrurj-175	168	1	1,25	1,25	NUM
arestyrurj-175	168	2	-	-	PUNCT
arestyrurj-175	168	3	dihydroxyvitamin	dihydroxyvitamin	ADJ
arestyrurj-175	168	4	d3	d3	PROPN
arestyrurj-175	168	5	controls	control	VERB
arestyrurj-175	168	6	a	a	DET
arestyrurj-175	168	7	cohort	cohort	NOUN
arestyrurj-175	168	8	of	of	ADP
arestyrurj-175	168	9	vitamin	vitamin	NOUN
arestyrurj-175	168	10	d	d	NOUN
arestyrurj-175	168	11	receptor	receptor	NOUN
arestyrurj-175	168	12	target	target	NOUN
arestyrurj-175	168	13	genes	gene	NOUN
arestyrurj-175	168	14	in	in	ADP
arestyrurj-175	168	15	the	the	DET
arestyrurj-175	168	16	proximal	proximal	ADJ
arestyrurj-175	168	17	intestine	intestine	NOUN
arestyrurj-175	168	18	that	that	PRON
arestyrurj-175	168	19	is	be	AUX
arestyrurj-175	168	20	enriched	enrich	VERB
arestyrurj-175	168	21	for	for	ADP
arestyrurj-175	168	22	calcium	calcium	NOUN
arestyrurj-175	168	23	-	-	PUNCT
arestyrurj-175	168	24	regulating	regulate	VERB
arestyrurj-175	168	25	components	component	NOUN
arestyrurj-175	168	26	.	.	PUNCT
arestyrurj-175	169	1	journal	journal	NOUN
arestyrurj-175	169	2	of	of	ADP
arestyrurj-175	169	3	biological	biological	ADJ
arestyrurj-175	169	4	chemistry	chemistry	NOUN
arestyrurj-175	169	5	,	,	PUNCT
arestyrurj-175	169	6	290(29	290(29	NUM
arestyrurj-175	169	7	)	)	PUNCT
arestyrurj-175	169	8	,	,	PUNCT
arestyrurj-175	169	9	18199–18215	18199–18215	NUM
arestyrurj-175	169	10	.	.	PUNCT
arestyrurj-175	170	1	[	[	X
arestyrurj-175	170	2	13	13	NUM
arestyrurj-175	170	3	]	]	SYM
arestyrurj-175	170	4	li	li	PROPN
arestyrurj-175	170	5	,	,	PUNCT
arestyrurj-175	170	6	h.	h.	PROPN
arestyrurj-175	170	7	,	,	PUNCT
arestyrurj-175	170	8	handsaker	handsaker	PROPN
arestyrurj-175	170	9	,	,	PUNCT
arestyrurj-175	170	10	b.	b.	PROPN
arestyrurj-175	170	11	,	,	PUNCT
arestyrurj-175	170	12	wysoker	wysoker	PROPN
arestyrurj-175	170	13	,	,	PUNCT
arestyrurj-175	170	14	a.	a.	NOUN
arestyrurj-175	170	15	,	,	PUNCT
arestyrurj-175	170	16	fennell	fennell	PROPN
arestyrurj-175	170	17	,	,	PUNCT
arestyrurj-175	170	18	t.	t.	PROPN
arestyrurj-175	170	19	,	,	PUNCT
arestyrurj-175	170	20	ruan	ruan	PROPN
arestyrurj-175	170	21	,	,	PUNCT
arestyrurj-175	170	22	j.	j.	PROPN
arestyrurj-175	170	23	,	,	PUNCT
arestyrurj-175	170	24	homer	homer	NOUN
arestyrurj-175	170	25	,	,	PUNCT
arestyrurj-175	170	26	n.	n.	NOUN
arestyrurj-175	170	27	,	,	PUNCT
arestyrurj-175	170	28	marth	marth	PROPN
arestyrurj-175	170	29	,	,	PUNCT
arestyrurj-175	170	30	g.	g.	PROPN
arestyrurj-175	170	31	,	,	PUNCT
arestyrurj-175	170	32	abecasis	abecasis	NOUN
arestyrurj-175	170	33	,	,	PUNCT
arestyrurj-175	170	34	g.	g.	NOUN
arestyrurj-175	170	35	,	,	PUNCT
arestyrurj-175	170	36	durbin	durbin	PROPN
arestyrurj-175	170	37	,	,	PUNCT
arestyrurj-175	170	38	r.	r.	PROPN
arestyrurj-175	170	39	,	,	PUNCT
arestyrurj-175	170	40	&	&	CCONJ
arestyrurj-175	170	41	1000	1000	NUM
arestyrurj-175	170	42	genome	genome	NOUN
arestyrurj-175	170	43	project	project	NOUN
arestyrurj-175	170	44	data	datum	NOUN
arestyrurj-175	170	45	processing	processing	NOUN
arestyrurj-175	170	46	subgroup	subgroup	NOUN
arestyrurj-175	170	47	.	.	PUNCT
arestyrurj-175	171	1	(	(	PUNCT
arestyrurj-175	171	2	2009	2009	NUM
arestyrurj-175	171	3	)	)	PUNCT
arestyrurj-175	171	4	.	.	PUNCT
arestyrurj-175	172	1	the	the	DET
arestyrurj-175	172	2	sequence	sequence	NOUN
arestyrurj-175	172	3	alignment	alignment	NOUN
arestyrurj-175	172	4	/	/	SYM
arestyrurj-175	172	5	map	map	NOUN
arestyrurj-175	172	6	format	format	NOUN
arestyrurj-175	172	7	and	and	CCONJ
arestyrurj-175	172	8	samtools	samtool	NOUN
arestyrurj-175	172	9	.	.	PUNCT
arestyrurj-175	173	1	bioinformatics	bioinformatic	NOUN
arestyrurj-175	173	2	,	,	PUNCT
arestyrurj-175	173	3	25(16	25(16	NOUN
arestyrurj-175	173	4	)	)	PUNCT
arestyrurj-175	173	5	,	,	PUNCT
arestyrurj-175	173	6	2078–2079	2078–2079	NUM
arestyrurj-175	173	7	.	.	PUNCT
arestyrurj-175	174	1	[	[	X
arestyrurj-175	174	2	14	14	NUM
arestyrurj-175	174	3	]	]	X
arestyrurj-175	174	4	liu	liu	PROPN
arestyrurj-175	174	5	,	,	PUNCT
arestyrurj-175	174	6	t.	t.	PROPN
arestyrurj-175	174	7	,	,	PUNCT
arestyrurj-175	174	8	ortiz	ortiz	PROPN
arestyrurj-175	174	9	,	,	PUNCT
arestyrurj-175	174	10	j.	j.	PROPN
arestyrurj-175	174	11	a.	a.	PROPN
arestyrurj-175	174	12	,	,	PUNCT
arestyrurj-175	174	13	taing	taing	NOUN
arestyrurj-175	174	14	,	,	PUNCT
arestyrurj-175	174	15	l.	l.	PROPN
arestyrurj-175	174	16	,	,	PUNCT
arestyrurj-175	174	17	meyer	meyer	PROPN
arestyrurj-175	174	18	,	,	PUNCT
arestyrurj-175	174	19	c.	c.	PROPN
arestyrurj-175	174	20	a.	a.	PROPN
arestyrurj-175	174	21	,	,	PUNCT
arestyrurj-175	174	22	lee	lee	PROPN
arestyrurj-175	174	23	,	,	PUNCT
arestyrurj-175	174	24	b.	b.	PROPN
arestyrurj-175	174	25	,	,	PUNCT
arestyrurj-175	174	26	zhang	zhang	PROPN
arestyrurj-175	174	27	,	,	PUNCT
arestyrurj-175	174	28	y.	y.	PROPN
arestyrurj-175	174	29	,	,	PUNCT
arestyrurj-175	174	30	shin	shin	PROPN
arestyrurj-175	174	31	,	,	PUNCT
arestyrurj-175	174	32	h.	h.	PROPN
arestyrurj-175	174	33	,	,	PUNCT
arestyrurj-175	174	34	wong	wong	PROPN
arestyrurj-175	174	35	,	,	PUNCT
arestyrurj-175	174	36	s.	s.	PROPN
arestyrurj-175	174	37	s.	s.	PROPN
arestyrurj-175	174	38	,	,	PUNCT
arestyrurj-175	174	39	ma	ma	PROPN
arestyrurj-175	174	40	,	,	PUNCT
arestyrurj-175	174	41	j.	j.	PROPN
arestyrurj-175	174	42	,	,	PUNCT
arestyrurj-175	174	43	lei	lei	PROPN
arestyrurj-175	174	44	,	,	PUNCT
arestyrurj-175	174	45	y.	y.	NOUN
arestyrurj-175	174	46	,	,	PUNCT
arestyrurj-175	174	47	pape	pape	NOUN
arestyrurj-175	174	48	,	,	PUNCT
arestyrurj-175	174	49	u.	u.	PROPN
arestyrurj-175	174	50	j.	j.	PROPN
arestyrurj-175	174	51	,	,	PUNCT
arestyrurj-175	174	52	poldinger	poldinger	NOUN
arestyrurj-175	174	53	,	,	PUNCT
arestyrurj-175	174	54	m.	m.	NOUN
arestyrurj-175	174	55	,	,	PUNCT
arestyrurj-175	174	56	chen	chen	PROPN
arestyrurj-175	174	57	,	,	PUNCT
arestyrurj-175	174	58	y.	y.	PROPN
arestyrurj-175	174	59	,	,	PUNCT
arestyrurj-175	174	60	yeung	yeung	PROPN
arestyrurj-175	174	61	,	,	PUNCT
arestyrurj-175	174	62	k.	k.	PROPN
arestyrurj-175	174	63	,	,	PUNCT
arestyrurj-175	174	64	brown	brown	PROPN
arestyrurj-175	174	65	,	,	PUNCT
arestyrurj-175	174	66	m.	m.	NOUN
arestyrurj-175	174	67	,	,	PUNCT
arestyrurj-175	174	68	turpaz	turpaz	PROPN
arestyrurj-175	174	69	,	,	PUNCT
arestyrurj-175	174	70	y.	y.	PROPN
arestyrurj-175	174	71	,	,	PUNCT
arestyrurj-175	174	72	&	&	CCONJ
arestyrurj-175	174	73	liu	liu	PROPN
arestyrurj-175	174	74	,	,	PUNCT
arestyrurj-175	174	75	x.	x.	PROPN
arestyrurj-175	174	76	s.	s.	PROPN
arestyrurj-175	174	77	(	(	PUNCT
arestyrurj-175	174	78	2011	2011	NUM
arestyrurj-175	174	79	)	)	PUNCT
arestyrurj-175	174	80	.	.	PUNCT
arestyrurj-175	175	1	cistrome	cistrome	VERB
arestyrurj-175	175	2	:	:	PUNCT
arestyrurj-175	175	3	an	an	DET
arestyrurj-175	175	4	integrative	integrative	ADJ
arestyrurj-175	175	5	platform	platform	NOUN
arestyrurj-175	175	6	for	for	ADP
arestyrurj-175	175	7	transcriptional	transcriptional	ADJ
arestyrurj-175	175	8	regulation	regulation	NOUN
arestyrurj-175	175	9	studies	study	NOUN
arestyrurj-175	175	10	.	.	PUNCT
arestyrurj-175	176	1	genome	genome	NOUN
arestyrurj-175	176	2	biology	biology	NOUN
arestyrurj-175	176	3	,	,	PUNCT
arestyrurj-175	176	4	12(8	12(8	NUM
arestyrurj-175	176	5	)	)	PUNCT
arestyrurj-175	176	6	,	,	PUNCT
arestyrurj-175	176	7	r83	r83	PROPN
arestyrurj-175	176	8	.	.	PUNCT
arestyrurj-175	177	1	[	[	X
arestyrurj-175	177	2	15	15	NUM
arestyrurj-175	177	3	]	]	PUNCT
arestyrurj-175	177	4	mouse	mouse	NOUN
arestyrurj-175	177	5	genome	genome	NOUN
arestyrurj-175	177	6	sequencing	sequencing	NOUN
arestyrurj-175	177	7	consortium	consortium	NOUN
arestyrurj-175	177	8	.	.	PUNCT
arestyrurj-175	178	1	(	(	PUNCT
arestyrurj-175	178	2	2002	2002	NUM
arestyrurj-175	178	3	)	)	PUNCT
arestyrurj-175	178	4	.	.	PUNCT
arestyrurj-175	179	1	initial	initial	ADJ
arestyrurj-175	179	2	sequencing	sequencing	NOUN
arestyrurj-175	179	3	and	and	CCONJ
arestyrurj-175	179	4	comparative	comparative	ADJ
arestyrurj-175	179	5	analysis	analysis	NOUN
arestyrurj-175	179	6	of	of	ADP
arestyrurj-175	179	7	the	the	DET
arestyrurj-175	179	8	mouse	mouse	NOUN
arestyrurj-175	179	9	genome	genome	NOUN
arestyrurj-175	179	10	.	.	PUNCT
arestyrurj-175	180	1	nature	nature	NOUN
arestyrurj-175	180	2	,	,	PUNCT
arestyrurj-175	180	3	420(6915	420(6915	NUM
arestyrurj-175	180	4	)	)	PUNCT
arestyrurj-175	180	5	,	,	PUNCT
arestyrurj-175	180	6	520–562	520–562	NUM
arestyrurj-175	180	7	.	.	PUNCT
arestyrurj-175	181	1	[	[	X
arestyrurj-175	181	2	16	16	NUM
arestyrurj-175	181	3	]	]	X
arestyrurj-175	181	4	pálmer	pálmer	NOUN
arestyrurj-175	181	5	,	,	PUNCT
arestyrurj-175	181	6	h.	h.	PROPN
arestyrurj-175	181	7	g.	g.	PROPN
arestyrurj-175	181	8	,	,	PUNCT
arestyrurj-175	181	9	larriba	larriba	PROPN
arestyrurj-175	181	10	,	,	PUNCT
arestyrurj-175	181	11	m.	m.	NOUN
arestyrurj-175	181	12	j.	j.	PROPN
arestyrurj-175	181	13	,	,	PUNCT
arestyrurj-175	181	14	garcía	garcía	PROPN
arestyrurj-175	181	15	,	,	PUNCT
arestyrurj-175	181	16	j.	j.	PROPN
arestyrurj-175	181	17	m.	m.	PROPN
arestyrurj-175	181	18	,	,	PUNCT
arestyrurj-175	181	19	ordóñez	ordóñez	NOUN
arestyrurj-175	181	20	-	-	PUNCT
arestyrurj-175	181	21	morán	morán	NOUN
arestyrurj-175	181	22	,	,	PUNCT
arestyrurj-175	181	23	p.	p.	NOUN
arestyrurj-175	181	24	,	,	PUNCT
arestyrurj-175	181	25	peña	peña	PROPN
arestyrurj-175	181	26	,	,	PUNCT
arestyrurj-175	181	27	c.	c.	NOUN
arestyrurj-175	181	28	,	,	PUNCT
arestyrurj-175	181	29	peiró	peiró	PROPN
arestyrurj-175	181	30	,	,	PUNCT
arestyrurj-175	181	31	s.	s.	PROPN
arestyrurj-175	181	32	,	,	PUNCT
arestyrurj-175	181	33	puig	puig	PROPN
arestyrurj-175	181	34	,	,	PUNCT
arestyrurj-175	181	35	i.	i.	PROPN
arestyrurj-175	181	36	,	,	PUNCT
arestyrurj-175	181	37	rodríguez	rodríguez	PROPN
arestyrurj-175	181	38	,	,	PUNCT
arestyrurj-175	181	39	r.	r.	PROPN
arestyrurj-175	181	40	,	,	PUNCT
arestyrurj-175	181	41	de	de	X
arestyrurj-175	181	42	la	la	X
arestyrurj-175	181	43	fuente	fuente	PROPN
arestyrurj-175	181	44	,	,	PUNCT
arestyrurj-175	181	45	r.	r.	PROPN
arestyrurj-175	181	46	,	,	PUNCT
arestyrurj-175	181	47	bernad	bernad	PROPN
arestyrurj-175	181	48	,	,	PUNCT
arestyrurj-175	181	49	a.	a.	NOUN
arestyrurj-175	181	50	,	,	PUNCT
arestyrurj-175	181	51	pollán	pollán	NOUN
arestyrurj-175	181	52	,	,	PUNCT
arestyrurj-175	181	53	m.	m.	NOUN
arestyrurj-175	181	54	,	,	PUNCT
arestyrurj-175	181	55	bonilla	bonilla	PROPN
arestyrurj-175	181	56	,	,	PUNCT
arestyrurj-175	181	57	f.	f.	PROPN
arestyrurj-175	181	58	,	,	PUNCT
arestyrurj-175	181	59	gamallo	gamallo	PROPN
arestyrurj-175	181	60	,	,	PUNCT
arestyrurj-175	181	61	c.	c.	PROPN
arestyrurj-175	181	62	,	,	PUNCT
arestyrurj-175	181	63	de	de	X
arestyrurj-175	181	64	herreros	herreros	PROPN
arestyrurj-175	181	65	,	,	PUNCT
arestyrurj-175	181	66	a.	a.	NOUN
arestyrurj-175	181	67	g.	g.	PROPN
arestyrurj-175	181	68	,	,	PUNCT
arestyrurj-175	181	69	&	&	CCONJ
arestyrurj-175	181	70	muñoz	muñoz	PROPN
arestyrurj-175	181	71	,	,	PUNCT
arestyrurj-175	181	72	a.	a.	NOUN
arestyrurj-175	181	73	(	(	PUNCT
arestyrurj-175	181	74	2004	2004	NUM
arestyrurj-175	181	75	)	)	PUNCT
arestyrurj-175	181	76	.	.	PUNCT
arestyrurj-175	182	1	the	the	DET
arestyrurj-175	182	2	transcription	transcription	NOUN
arestyrurj-175	182	3	factor	factor	NOUN
arestyrurj-175	182	4	snail	snail	NOUN
arestyrurj-175	182	5	represses	repress	VERB
arestyrurj-175	182	6	vitamin	vitamin	NOUN
arestyrurj-175	182	7	d	d	NOUN
arestyrurj-175	182	8	receptor	receptor	NOUN
arestyrurj-175	182	9	expression	expression	NOUN
arestyrurj-175	182	10	and	and	CCONJ
arestyrurj-175	182	11	responsiveness	responsiveness	NOUN
arestyrurj-175	182	12	in	in	ADP
arestyrurj-175	182	13	human	human	ADJ
arestyrurj-175	182	14	colon	colon	NOUN
arestyrurj-175	182	15	cancer	cancer	NOUN
arestyrurj-175	182	16	.	.	PUNCT
arestyrurj-175	183	1	nature	nature	NOUN
arestyrurj-175	183	2	medicine	medicine	NOUN
arestyrurj-175	183	3	,	,	PUNCT
arestyrurj-175	183	4	10(9	10(9	NUM
arestyrurj-175	183	5	)	)	PUNCT
arestyrurj-175	183	6	,	,	PUNCT
arestyrurj-175	183	7	917–919	917–919	NUM
arestyrurj-175	183	8	.	.	PUNCT
arestyrurj-175	184	1	[	[	X
arestyrurj-175	184	2	17	17	NUM
arestyrurj-175	184	3	]	]	X
arestyrurj-175	184	4	quinlan	quinlan	PROPN
arestyrurj-175	184	5	,	,	PUNCT
arestyrurj-175	184	6	a.	a.	PROPN
arestyrurj-175	184	7	r.	r.	PROPN
arestyrurj-175	184	8	,	,	PUNCT
arestyrurj-175	184	9	&	&	CCONJ
arestyrurj-175	184	10	hall	hall	PROPN
arestyrurj-175	184	11	,	,	PUNCT
arestyrurj-175	184	12	i.	i.	PROPN
arestyrurj-175	184	13	m.	m.	PROPN
arestyrurj-175	184	14	(	(	PUNCT
arestyrurj-175	184	15	2010	2010	NUM
arestyrurj-175	184	16	)	)	PUNCT
arestyrurj-175	184	17	.	.	PUNCT
arestyrurj-175	185	1	bedtools	bedtool	NOUN
arestyrurj-175	185	2	:	:	PUNCT
arestyrurj-175	185	3	a	a	DET
arestyrurj-175	185	4	flexible	flexible	ADJ
arestyrurj-175	185	5	suite	suite	NOUN
arestyrurj-175	185	6	of	of	ADP
arestyrurj-175	185	7	utilities	utility	NOUN
arestyrurj-175	185	8	for	for	ADP
arestyrurj-175	185	9	comparing	compare	VERB
arestyrurj-175	185	10	genomic	genomic	NOUN
arestyrurj-175	185	11	features	feature	NOUN
arestyrurj-175	185	12	.	.	PUNCT
arestyrurj-175	186	1	bioinformatics	bioinformatic	NOUN
arestyrurj-175	186	2	,	,	PUNCT
arestyrurj-175	186	3	26(6	26(6	NUM
arestyrurj-175	186	4	)	)	PUNCT
arestyrurj-175	186	5	,	,	PUNCT
arestyrurj-175	186	6	841–842	841–842	NUM
arestyrurj-175	186	7	.	.	PUNCT
arestyrurj-175	187	1	[	[	X
arestyrurj-175	187	2	18	18	NUM
arestyrurj-175	187	3	]	]	PUNCT
arestyrurj-175	187	4	ramírez	ramírez	NOUN
arestyrurj-175	187	5	,	,	PUNCT
arestyrurj-175	187	6	f.	f.	PROPN
arestyrurj-175	187	7	,	,	PUNCT
arestyrurj-175	187	8	ryan	ryan	PROPN
arestyrurj-175	187	9	,	,	PUNCT
arestyrurj-175	187	10	d.	d.	PROPN
arestyrurj-175	187	11	p.	p.	PROPN
arestyrurj-175	187	12	,	,	PUNCT
arestyrurj-175	187	13	grüning	grüne	VERB
arestyrurj-175	187	14	,	,	PUNCT
arestyrurj-175	187	15	b.	b.	PROPN
arestyrurj-175	187	16	,	,	PUNCT
arestyrurj-175	187	17	bhardwaj	bhardwaj	PROPN
arestyrurj-175	187	18	,	,	PUNCT
arestyrurj-175	187	19	v.	v.	PROPN
arestyrurj-175	187	20	,	,	PUNCT
arestyrurj-175	187	21	kilpert	kilpert	PROPN
arestyrurj-175	187	22	,	,	PUNCT
arestyrurj-175	187	23	f.	f.	PROPN
arestyrurj-175	187	24	,	,	PUNCT
arestyrurj-175	187	25	richter	richter	PROPN
arestyrurj-175	187	26	,	,	PUNCT
arestyrurj-175	187	27	a.	a.	PROPN
arestyrurj-175	187	28	s.	s.	PROPN
arestyrurj-175	187	29	,	,	PUNCT
arestyrurj-175	187	30	heyne	heyne	PROPN
arestyrurj-175	187	31	,	,	PUNCT
arestyrurj-175	187	32	s.	s.	PROPN
arestyrurj-175	187	33	,	,	PUNCT
arestyrurj-175	187	34	dündar	dündar	PROPN
arestyrurj-175	187	35	,	,	PUNCT
arestyrurj-175	187	36	f.	f.	PROPN
arestyrurj-175	187	37	,	,	PUNCT
arestyrurj-175	187	38	&	&	CCONJ
arestyrurj-175	187	39	manke	manke	ADJ
arestyrurj-175	187	40	,	,	PUNCT
arestyrurj-175	187	41	t.	t.	PROPN
arestyrurj-175	187	42	(	(	PUNCT
arestyrurj-175	187	43	2014	2014	NUM
arestyrurj-175	187	44	)	)	PUNCT
arestyrurj-175	187	45	.	.	PUNCT
arestyrurj-175	188	1	deeptools2	deeptools2	PROPN
arestyrurj-175	188	2	:	:	PUNCT
arestyrurj-175	188	3	a	a	DET
arestyrurj-175	188	4	next	next	ADJ
arestyrurj-175	188	5	generation	generation	NOUN
arestyrurj-175	188	6	web	web	NOUN
arestyrurj-175	188	7	server	server	NOUN
arestyrurj-175	188	8	for	for	ADP
arestyrurj-175	188	9	deep	deep	ADV
arestyrurj-175	188	10	-	-	PUNCT
arestyrurj-175	188	11	sequencing	sequence	VERB
arestyrurj-175	188	12	data	datum	NOUN
arestyrurj-175	188	13	analysis	analysis	NOUN
arestyrurj-175	188	14	.	.	PUNCT
arestyrurj-175	189	1	nucleic	nucleic	ADJ
arestyrurj-175	189	2	acids	acid	NOUN
arestyrurj-175	189	3	research	research	NOUN
arestyrurj-175	189	4	,	,	PUNCT
arestyrurj-175	189	5	44(w1	44(w1	NUM
arestyrurj-175	189	6	)	)	PUNCT
arestyrurj-175	189	7	,	,	PUNCT
arestyrurj-175	189	8	w160	w160	PROPN
arestyrurj-175	189	9	–	–	PUNCT
arestyrurj-175	189	10	w165	w165	PROPN
arestyrurj-175	189	11	.	.	PUNCT
arestyrurj-175	190	1	[	[	X
arestyrurj-175	190	2	19	19	NUM
arestyrurj-175	190	3	]	]	X
arestyrurj-175	190	4	stark	stark	PROPN
arestyrurj-175	190	5	,	,	PUNCT
arestyrurj-175	190	6	r.	r.	PROPN
arestyrurj-175	190	7	,	,	PUNCT
arestyrurj-175	190	8	&	&	CCONJ
arestyrurj-175	190	9	brown	brown	PROPN
arestyrurj-175	190	10	,	,	PUNCT
arestyrurj-175	190	11	d.	d.	PROPN
arestyrurj-175	190	12	(	(	PUNCT
arestyrurj-175	190	13	2011	2011	NUM
arestyrurj-175	190	14	)	)	PUNCT
arestyrurj-175	190	15	.	.	PUNCT
arestyrurj-175	191	1	diffbind	diffbind	ADJ
arestyrurj-175	191	2	:	:	PUNCT
arestyrurj-175	191	3	differential	differential	ADJ
arestyrurj-175	191	4	binding	bind	VERB
arestyrurj-175	191	5	analysis	analysis	NOUN
arestyrurj-175	191	6	of	of	ADP
arestyrurj-175	191	7	chip	chip	NOUN
arestyrurj-175	191	8	-	-	PUNCT
arestyrurj-175	191	9	seq	seq	NOUN
arestyrurj-175	191	10	peak	peak	NOUN
arestyrurj-175	191	11	data	datum	NOUN
arestyrurj-175	191	12	.	.	PUNCT
arestyrurj-175	192	1	https://bioconductor.org/packages/release/bioc/vignettes/diffbind/inst/doc/diffbind.pdf	https://bioconductor.org/packages/release/bioc/vignettes/diffbind/inst/doc/diffbind.pdf	PROPN
arestyrurj-175	192	2	[	[	X
arestyrurj-175	192	3	20	20	NUM
arestyrurj-175	192	4	]	]	PUNCT
arestyrurj-175	192	5	suda	suda	NOUN
arestyrurj-175	192	6	,	,	PUNCT
arestyrurj-175	192	7	t.	t.	PROPN
arestyrurj-175	192	8	,	,	PUNCT
arestyrurj-175	192	9	masuyama	masuyama	PROPN
arestyrurj-175	192	10	,	,	PUNCT
arestyrurj-175	192	11	r.	r.	PROPN
arestyrurj-175	192	12	,	,	PUNCT
arestyrurj-175	192	13	bouillon	bouillon	PROPN
arestyrurj-175	192	14	,	,	PUNCT
arestyrurj-175	192	15	r.	r.	PROPN
arestyrurj-175	192	16	,	,	PUNCT
arestyrurj-175	192	17	&	&	CCONJ
arestyrurj-175	192	18	carmeliet	carmeliet	PROPN
arestyrurj-175	192	19	,	,	PUNCT
arestyrurj-175	192	20	g.	g.	PROPN
arestyrurj-175	192	21	(	(	PUNCT
arestyrurj-175	192	22	2015	2015	NUM
arestyrurj-175	192	23	)	)	PUNCT
arestyrurj-175	192	24	.	.	PUNCT
arestyrurj-175	193	1	physiological	physiological	ADJ
arestyrurj-175	193	2	functions	function	NOUN
arestyrurj-175	193	3	of	of	ADP
arestyrurj-175	193	4	vitamin	vitamin	NOUN
arestyrurj-175	193	5	d	d	NOUN
arestyrurj-175	193	6	:	:	PUNCT
arestyrurj-175	193	7	what	what	PRON
arestyrurj-175	193	8	we	we	PRON
arestyrurj-175	193	9	have	have	AUX
arestyrurj-175	193	10	learned	learn	VERB
arestyrurj-175	193	11	from	from	ADP
arestyrurj-175	193	12	global	global	ADJ
arestyrurj-175	193	13	and	and	CCONJ
arestyrurj-175	193	14	conditional	conditional	ADJ
arestyrurj-175	193	15	vdr	vdr	NOUN
arestyrurj-175	193	16	knockout	knockout	PROPN
arestyrurj-175	193	17	mouse	mouse	NOUN
arestyrurj-175	193	18	studies	study	NOUN
arestyrurj-175	193	19	.	.	PUNCT
arestyrurj-175	194	1	current	current	ADJ
arestyrurj-175	194	2	opinion	opinion	NOUN
arestyrurj-175	194	3	in	in	ADP
arestyrurj-175	194	4	pharmacology	pharmacology	NOUN
arestyrurj-175	194	5	,	,	PUNCT
arestyrurj-175	194	6	22	22	NUM
arestyrurj-175	194	7	,	,	PUNCT
arestyrurj-175	194	8	87–99	87–99	NUM
arestyrurj-175	194	9	.	.	PUNCT
arestyrurj-175	195	1	[	[	X
arestyrurj-175	195	2	21	21	NUM
arestyrurj-175	195	3	]	]	X
arestyrurj-175	195	4	vaughan	vaughan	PROPN
arestyrurj-175	195	5	-	-	PUNCT
arestyrurj-175	195	6	shaw	shaw	PROPN
arestyrurj-175	195	7	,	,	PUNCT
arestyrurj-175	195	8	p.	p.	NOUN
arestyrurj-175	195	9	g.	g.	PROPN
arestyrurj-175	195	10	,	,	PUNCT
arestyrurj-175	195	11	o’sullivan	o’sullivan	PROPN
arestyrurj-175	195	12	,	,	PUNCT
arestyrurj-175	195	13	f.	f.	PROPN
arestyrurj-175	195	14	,	,	PUNCT
arestyrurj-175	195	15	farrington	farrington	PROPN
arestyrurj-175	195	16	,	,	PUNCT
arestyrurj-175	195	17	s.	s.	PROPN
arestyrurj-175	195	18	m.	m.	PROPN
arestyrurj-175	195	19	,	,	PUNCT
arestyrurj-175	195	20	theodoratou	theodoratou	PROPN
arestyrurj-175	195	21	,	,	PUNCT
arestyrurj-175	195	22	e.	e.	PROPN
arestyrurj-175	195	23	,	,	PUNCT
arestyrurj-175	195	24	campbell	campbell	PROPN
arestyrurj-175	195	25	,	,	PUNCT
arestyrurj-175	195	26	h.	h.	PROPN
arestyrurj-175	195	27	,	,	PUNCT
arestyrurj-175	195	28	duntop	duntop	NOUN
arestyrurj-175	195	29	,	,	PUNCT
arestyrurj-175	195	30	m.	m.	NOUN
arestyrurj-175	195	31	g.	g.	PROPN
arestyrurj-175	195	32	,	,	PUNCT
arestyrurj-175	195	33	&	&	CCONJ
arestyrurj-175	195	34	zgaga	zgaga	PROPN
arestyrurj-175	195	35	,	,	PUNCT
arestyrurj-175	195	36	l.	l.	PROPN
arestyrurj-175	195	37	(	(	PUNCT
arestyrurj-175	195	38	2017	2017	NUM
arestyrurj-175	195	39	)	)	PUNCT
arestyrurj-175	195	40	.	.	PUNCT
arestyrurj-175	196	1	the	the	DET
arestyrurj-175	196	2	impact	impact	NOUN
arestyrurj-175	196	3	of	of	ADP
arestyrurj-175	196	4	vitamin	vitamin	NOUN
arestyrurj-175	196	5	d	d	NOUN
arestyrurj-175	196	6	pathway	pathway	NOUN
arestyrurj-175	196	7	genetic	genetic	ADJ
arestyrurj-175	196	8	variation	variation	NOUN
arestyrurj-175	196	9	and	and	CCONJ
arestyrurj-175	196	10	circulating	circulate	VERB
arestyrurj-175	196	11	25	25	NUM
arestyrurj-175	196	12	-	-	PUNCT
arestyrurj-175	196	13	hydroxyvitamin	hydroxyvitamin	NOUN
arestyrurj-175	196	14	d	d	NOUN
arestyrurj-175	196	15	on	on	ADP
arestyrurj-175	196	16	cancer	cancer	NOUN
arestyrurj-175	196	17	outcome	outcome	NOUN
arestyrurj-175	196	18	:	:	PUNCT
arestyrurj-175	196	19	systematic	systematic	ADJ
arestyrurj-175	196	20	review	review	NOUN
arestyrurj-175	196	21	and	and	CCONJ
arestyrurj-175	196	22	meta	meta	ADJ
arestyrurj-175	196	23	-	-	PUNCT
arestyrurj-175	196	24	analysis	analysis	NOUN
arestyrurj-175	196	25	.	.	PUNCT
arestyrurj-175	197	1	british	british	ADJ
arestyrurj-175	197	2	journal	journal	PROPN
arestyrurj-175	197	3	of	of	ADP
arestyrurj-175	197	4	cancer	cancer	NOUN
arestyrurj-175	197	5	,	,	PUNCT
arestyrurj-175	197	6	116(8	116(8	NUM
arestyrurj-175	197	7	)	)	PUNCT
arestyrurj-175	197	8	,	,	PUNCT
arestyrurj-175	197	9	1092–1110	1092–1110	NUM
arestyrurj-175	197	10	.	.	PUNCT
arestyrurj-175	198	1	[	[	X
arestyrurj-175	198	2	22	22	NUM
arestyrurj-175	198	3	]	]	X
arestyrurj-175	198	4	zhang	zhang	PROPN
arestyrurj-175	198	5	,	,	PUNCT
arestyrurj-175	198	6	y.	y.	PROPN
arestyrurj-175	198	7	,	,	PUNCT
arestyrurj-175	198	8	liu	liu	PROPN
arestyrurj-175	198	9	,	,	PUNCT
arestyrurj-175	198	10	t.	t.	PROPN
arestyrurj-175	198	11	,	,	PUNCT
arestyrurj-175	198	12	meyer	meyer	PROPN
arestyrurj-175	198	13	,	,	PUNCT
arestyrurj-175	198	14	c.	c.	PROPN
arestyrurj-175	198	15	a.	a.	PROPN
arestyrurj-175	198	16	,	,	PUNCT
arestyrurj-175	198	17	eeckhoute	eeckhoute	PROPN
arestyrurj-175	198	18	,	,	PUNCT
arestyrurj-175	198	19	j.	j.	PROPN
arestyrurj-175	198	20	,	,	PUNCT
arestyrurj-175	198	21	johnson	johnson	PROPN
arestyrurj-175	198	22	,	,	PUNCT
arestyrurj-175	198	23	d.	d.	PROPN
arestyrurj-175	198	24	s.	s.	PROPN
arestyrurj-175	198	25	,	,	PUNCT
arestyrurj-175	198	26	bernstein	bernstein	PROPN
arestyrurj-175	198	27	,	,	PUNCT
arestyrurj-175	198	28	b.	b.	PROPN
arestyrurj-175	198	29	e.	e.	PROPN
arestyrurj-175	198	30	,	,	PUNCT
arestyrurj-175	198	31	nusbaum	nusbaum	PROPN
arestyrurj-175	198	32	,	,	PUNCT
arestyrurj-175	198	33	c.	c.	PROPN
arestyrurj-175	198	34	,	,	PUNCT
arestyrurj-175	198	35	myers	myers	PROPN
arestyrurj-175	198	36	,	,	PUNCT
arestyrurj-175	198	37	r.	r.	PROPN
arestyrurj-175	198	38	m.	m.	PROPN
arestyrurj-175	198	39	,	,	PUNCT
arestyrurj-175	198	40	brown	brown	PROPN
arestyrurj-175	198	41	,	,	PUNCT
arestyrurj-175	198	42	m.	m.	NOUN
arestyrurj-175	198	43	,	,	PUNCT
arestyrurj-175	198	44	li	li	PROPN
arestyrurj-175	198	45	,	,	PUNCT
arestyrurj-175	198	46	w.	w.	PROPN
arestyrurj-175	198	47	,	,	PUNCT
arestyrurj-175	198	48	&	&	CCONJ
arestyrurj-175	198	49	liu	liu	PROPN
arestyrurj-175	198	50	,	,	PUNCT
arestyrurj-175	198	51	x.	x.	PROPN
arestyrurj-175	198	52	s.	s.	PROPN
arestyrurj-175	198	53	(	(	PUNCT
arestyrurj-175	198	54	2008	2008	NUM
arestyrurj-175	198	55	)	)	PUNCT
arestyrurj-175	198	56	.	.	PUNCT
arestyrurj-175	199	1	model	model	NOUN
arestyrurj-175	199	2	-	-	PUNCT
arestyrurj-175	199	3	based	base	VERB
arestyrurj-175	199	4	analysis	analysis	NOUN
arestyrurj-175	199	5	of	of	ADP
arestyrurj-175	199	6	chip	chip	NOUN
arestyrurj-175	199	7	-	-	PUNCT
arestyrurj-175	199	8	seq	seq	NOUN
arestyrurj-175	199	9	(	(	PUNCT
arestyrurj-175	199	10	macs	mac	NOUN
arestyrurj-175	199	11	)	)	PUNCT
arestyrurj-175	199	12	.	.	PUNCT
arestyrurj-175	200	1	genome	genome	NOUN
arestyrurj-175	200	2	biology	biology	NOUN
arestyrurj-175	200	3	,	,	PUNCT
arestyrurj-175	200	4	9(9	9(9	NUM
arestyrurj-175	200	5	)	)	PUNCT
arestyrurj-175	200	6	,	,	PUNCT
arestyrurj-175	200	7	r137	r137	PROPN
arestyrurj-175	200	8	.	.	PUNCT
arestyrurj-175	201	1	dennis	dennis	PROPN
arestyrurj-175	201	2	aldea	aldea	PROPN
arestyrurj-175	201	3	is	be	AUX
arestyrurj-175	201	4	a	a	DET
arestyrurj-175	201	5	senior	senior	ADJ
arestyrurj-175	201	6	undergraduate	undergraduate	NOUN
arestyrurj-175	201	7	student	student	NOUN
arestyrurj-175	201	8	in	in	ADP
arestyrurj-175	201	9	the	the	DET
arestyrurj-175	201	10	genetics	genetic	NOUN
arestyrurj-175	201	11	program	program	NOUN
arestyrurj-175	201	12	at	at	ADP
arestyrurj-175	201	13	rutgers	rutgers	PROPN
arestyrurj-175	201	14	new	new	PROPN
arestyrurj-175	201	15	brunswick	brunswick	PROPN
arestyrurj-175	201	16	.	.	PUNCT
arestyrurj-175	202	1	his	his	PRON
arestyrurj-175	202	2	interest	interest	NOUN
arestyrurj-175	202	3	in	in	ADP
arestyrurj-175	202	4	scientific	scientific	ADJ
arestyrurj-175	202	5	research	research	NOUN
arestyrurj-175	202	6	was	be	AUX
arestyrurj-175	202	7	sparked	spark	VERB
arestyrurj-175	202	8	by	by	ADP
arestyrurj-175	202	9	his	his	PRON
arestyrurj-175	202	10	experience	experience	NOUN
arestyrurj-175	202	11	in	in	ADP
arestyrurj-175	202	12	the	the	DET
arestyrurj-175	202	13	rutgers	rutgers	PROPN
arestyrurj-175	202	14	waksman	waksman	PROPN
arestyrurj-175	202	15	student	student	PROPN
arestyrurj-175	202	16	scholars	scholars	PROPN
arestyrurj-175	202	17	program	program	PROPN
arestyrurj-175	202	18	,	,	PUNCT
arestyrurj-175	202	19	a	a	DET
arestyrurj-175	202	20	biotechnology	biotechnology	NOUN
arestyrurj-175	202	21	outreach	outreach	NOUN
arestyrurj-175	202	22	program	program	NOUN
arestyrurj-175	202	23	for	for	ADP
arestyrurj-175	202	24	high	high	ADJ
arestyrurj-175	202	25	school	school	NOUN
arestyrurj-175	202	26	students	student	NOUN
arestyrurj-175	202	27	.	.	PUNCT
arestyrurj-175	203	1	dennis	dennis	PROPN
arestyrurj-175	203	2	currently	currently	ADV
arestyrurj-175	203	3	works	work	VERB
arestyrurj-175	203	4	with	with	ADP
arestyrurj-175	203	5	dr	dr	PROPN
arestyrurj-175	203	6	.	.	PROPN
arestyrurj-175	203	7	michael	michael	PROPN
arestyrurj-175	203	8	verzi	verzi	PROPN
arestyrurj-175	203	9	at	at	ADP
arestyrurj-175	203	10	the	the	DET
arestyrurj-175	203	11	human	human	PROPN
arestyrurj-175	203	12	genetics	genetics	PROPN
arestyrurj-175	203	13	institute	institute	PROPN
arestyrurj-175	203	14	of	of	ADP
arestyrurj-175	203	15	new	new	PROPN
arestyrurj-175	203	16	jersey	jersey	PROPN
arestyrurj-175	203	17	,	,	PUNCT
arestyrurj-175	203	18	where	where	SCONJ
arestyrurj-175	203	19	he	he	PRON
arestyrurj-175	203	20	conducts	conduct	VERB
arestyrurj-175	203	21	bioinformatics	bioinformatics	NOUN
arestyrurj-175	203	22	analyses	analysis	NOUN
arestyrurj-175	203	23	to	to	PART
arestyrurj-175	203	24	investigate	investigate	VERB
arestyrurj-175	203	25	the	the	DET
arestyrurj-175	203	26	genetic	genetic	ADJ
arestyrurj-175	203	27	basis	basis	NOUN
arestyrurj-175	203	28	of	of	ADP
arestyrurj-175	203	29	intestinal	intestinal	ADJ
arestyrurj-175	203	30	diseases	disease	NOUN
arestyrurj-175	203	31	and	and	CCONJ
arestyrurj-175	203	32	cancers	cancer	NOUN
arestyrurj-175	203	33	.	.	PUNCT
arestyrurj-175	204	1	https://bioconductor.org/packages/release/bioc/vignettes/diffbind/inst/doc/diffbind.pdf	https://bioconductor.org/packages/release/bioc/vignettes/diffbind/inst/doc/diffbind.pdf	PROPN
arestyrurj-175	204	2	https://bioconductor.org/packages/release/bioc/vignettes/diffbind/inst/doc/diffbind.pdf	https://bioconductor.org/packages/release/bioc/vignettes/diffbind/inst/doc/diffbind.pdf	PROPN