id	sid	tid	token	lemma	pos
ajb-31	1	1	atlas	atlas	PROPN
ajb-31	1	2	journal	journal	PROPN
ajb-31	1	3	of	of	ADP
ajb-31	1	4	biology	biology	NOUN
ajb-31	1	5	3	3	NUM
ajb-31	1	6	(	(	PUNCT
ajb-31	1	7	1	1	NUM
ajb-31	1	8	):	):	PUNCT
ajb-31	1	9	206–211	206–211	NUM
ajb-31	1	10	,	,	PUNCT
ajb-31	1	11	2014	2014	NUM
ajb-31	1	12	doi	doi	NOUN
ajb-31	1	13	:	:	PUNCT
ajb-31	1	14	10.5147	10.5147	NUM
ajb-31	1	15	/	/	SYM
ajb-31	1	16	ajb.2014.0134	ajb.2014.0134	VERB
ajb-31	1	17	a	a	DET
ajb-31	1	18	tla	tla	NOUN
ajb-31	1	19	s	s	PART
ajb-31	1	20	jo	jo	NOUN
ajb-31	1	21	ur	ur	INTJ
ajb-31	1	22	na	na	NOUN
ajb-31	1	23	l	l	NOUN
ajb-31	2	1	o	o	X
ajb-31	2	2	f	f	X
ajb-31	2	3	bi	bi	NOUN
ajb-31	2	4	ol	ol	PROPN
ajb-31	2	5	og	og	PROPN
ajb-31	2	6	y	y	PROPN
ajb-31	2	7	is	be	AUX
ajb-31	2	8	sn	sn	PROPN
ajb-31	2	9	2	2	NUM
ajb-31	2	10	15	15	NUM
ajb-31	2	11	891	891	NUM
ajb-31	2	12	51	51	NUM
ajb-31	2	13	.	.	PUNCT
ajb-31	3	1	p	p	X
ajb-31	3	2	ub	ub	ADJ
ajb-31	3	3	lis	li	NOUN
ajb-31	3	4	he	he	PRON
ajb-31	3	5	d	d	NOUN
ajb-31	3	6	by	by	ADP
ajb-31	3	7	a	a	DET
ajb-31	3	8	tla	tla	NOUN
ajb-31	3	9	s	s	AUX
ajb-31	3	10	pu	pu	INTJ
ajb-31	3	11	bl	bl	PROPN
ajb-31	3	12	ish	ish	VERB
ajb-31	3	13	in	in	ADP
ajb-31	3	14	g	g	PROPN
ajb-31	3	15	,	,	PUNCT
ajb-31	4	1	l	l	NOUN
ajb-31	4	2	p	p	X
ajb-31	5	1	(	(	PUNCT
ajb-31	5	2	w	w	PROPN
ajb-31	5	3	w	w	PROPN
ajb-31	5	4	w	w	PROPN
ajb-31	5	5	.a	.a	PROPN
ajb-31	5	6	tla	tla	AUX
ajb-31	5	7	spu	spu	PROPN
ajb-31	5	8	bl	bl	PROPN
ajb-31	5	9	ish	ish	VERB
ajb-31	5	10	in	in	ADP
ajb-31	5	11	g.	g.	PROPN
ajb-31	5	12	or	or	CCONJ
ajb-31	5	13	g	g	NOUN
ajb-31	5	14	)	)	PUNCT
ajb-31	5	15	snp	snp	PROPN
ajb-31	5	16	-	-	PUNCT
ajb-31	5	17	e	e	NOUN
ajb-31	5	18	:	:	PUNCT
ajb-31	5	19	a	a	DET
ajb-31	5	20	new	new	ADJ
ajb-31	5	21	method	method	NOUN
ajb-31	5	22	for	for	ADP
ajb-31	5	23	multiple	multiple	ADJ
ajb-31	5	24	sequence	sequence	NOUN
ajb-31	5	25	alignments	alignment	VERB
ajb-31	5	26	analysis	analysis	NOUN
ajb-31	5	27	and	and	CCONJ
ajb-31	5	28	accurate	accurate	ADJ
ajb-31	5	29	single	single	ADJ
ajb-31	5	30	nucleotide	nucleotide	ADJ
ajb-31	5	31	polymorphism	polymorphism	NOUN
ajb-31	5	32	evaluation	evaluation	NOUN
ajb-31	5	33	melody	melody	NOUN
ajb-31	5	34	n.	n.	PROPN
ajb-31	5	35	hemmati	hemmati	PROPN
ajb-31	5	36	-	-	PUNCT
ajb-31	5	37	sholeh1	sholeh1	PROPN
ajb-31	5	38	,	,	PUNCT
ajb-31	5	39	larry	larry	PROPN
ajb-31	5	40	a.	a.	PROPN
ajb-31	5	41	sholeh2	sholeh2	PROPN
ajb-31	5	42	,	,	PUNCT
ajb-31	5	43	and	and	CCONJ
ajb-31	5	44	david	david	PROPN
ajb-31	5	45	a.	a.	PROPN
ajb-31	5	46	lightfoot1	lightfoot1	PROPN
ajb-31	5	47	,	,	PUNCT
ajb-31	5	48	*	*	SYM
ajb-31	5	49	1	1	NUM
ajb-31	5	50	genomics	genomics	NOUN
ajb-31	5	51	core	core	NOUN
ajb-31	5	52	facility	facility	NOUN
ajb-31	5	53	;	;	PUNCT
ajb-31	5	54	department	department	NOUN
ajb-31	5	55	of	of	ADP
ajb-31	5	56	plant	plant	NOUN
ajb-31	5	57	soil	soil	NOUN
ajb-31	5	58	and	and	CCONJ
ajb-31	5	59	agricultural	agricultural	ADJ
ajb-31	5	60	systems	system	NOUN
ajb-31	5	61	,	,	PUNCT
ajb-31	5	62	and	and	CCONJ
ajb-31	5	63	the	the	DET
ajb-31	5	64	illinois	illinois	PROPN
ajb-31	5	65	soybean	soybean	PROPN
ajb-31	5	66	center	center	PROPN
ajb-31	5	67	,	,	PUNCT
ajb-31	5	68	southern	southern	ADJ
ajb-31	5	69	illinois	illinois	PROPN
ajb-31	5	70	university	university	PROPN
ajb-31	5	71	at	at	ADP
ajb-31	5	72	carbondale	carbondale	PROPN
ajb-31	5	73	,	,	PUNCT
ajb-31	5	74	carbondale	carbondale	PROPN
ajb-31	5	75	,	,	PUNCT
ajb-31	5	76	il	il	PROPN
ajb-31	5	77	62901	62901	NUM
ajb-31	5	78	,	,	PUNCT
ajb-31	5	79	usa	usa	PROPN
ajb-31	5	80	;	;	PUNCT
ajb-31	5	81	2	2	NUM
ajb-31	5	82	department	department	NOUN
ajb-31	5	83	of	of	ADP
ajb-31	5	84	electrical	electrical	ADJ
ajb-31	5	85	and	and	CCONJ
ajb-31	5	86	computer	computer	NOUN
ajb-31	5	87	engineering	engineering	NOUN
ajb-31	5	88	,	,	PUNCT
ajb-31	5	89	southern	southern	ADJ
ajb-31	5	90	illinois	illinois	PROPN
ajb-31	5	91	university	university	PROPN
ajb-31	5	92	at	at	ADP
ajb-31	5	93	carbondale	carbondale	PROPN
ajb-31	5	94	,	,	PUNCT
ajb-31	5	95	carbondale	carbondale	PROPN
ajb-31	5	96	,	,	PUNCT
ajb-31	5	97	il	il	PROPN
ajb-31	5	98	62901	62901	NUM
ajb-31	5	99	,	,	PUNCT
ajb-31	5	100	usa	usa	PROPN
ajb-31	5	101	received	receive	VERB
ajb-31	5	102	:	:	PUNCT
ajb-31	5	103	june	june	PROPN
ajb-31	5	104	19	19	NUM
ajb-31	5	105	,	,	PUNCT
ajb-31	5	106	2014	2014	NUM
ajb-31	5	107	/	/	SYM
ajb-31	5	108	accepted	accept	VERB
ajb-31	5	109	:	:	PUNCT
ajb-31	5	110	september	september	PROPN
ajb-31	5	111	5	5	NUM
ajb-31	5	112	,	,	PUNCT
ajb-31	5	113	2014	2014	NUM
ajb-31	5	114	_	_	PUNCT
ajb-31	6	1	_	_	PUNCT
ajb-31	7	1	_	_	PUNCT
ajb-31	8	1	_	_	PUNCT
ajb-31	9	1	_	_	PUNCT
ajb-31	10	1	_	_	PUNCT
ajb-31	11	1	_	_	PUNCT
ajb-31	12	1	_	_	PUNCT
ajb-31	13	1	_	_	PUNCT
ajb-31	14	1	_	_	PUNCT
ajb-31	15	1	_	_	PUNCT
ajb-31	16	1	_	_	PUNCT
ajb-31	17	1	_	_	PUNCT
ajb-31	18	1	_	_	PUNCT
ajb-31	19	1	_	_	PUNCT
ajb-31	20	1	_	_	PUNCT
ajb-31	21	1	_	_	PUNCT
ajb-31	22	1	_	_	PUNCT
ajb-31	23	1	_	_	PUNCT
ajb-31	24	1	_	_	PUNCT
ajb-31	25	1	_	_	PUNCT
ajb-31	26	1	_	_	PUNCT
ajb-31	27	1	_	_	PUNCT
ajb-31	28	1	_	_	PUNCT
ajb-31	29	1	_	_	PUNCT
ajb-31	30	1	_	_	PUNCT
ajb-31	31	1	_	_	PUNCT
ajb-31	32	1	_	_	PUNCT
ajb-31	33	1	_	_	PUNCT
ajb-31	34	1	_	_	PUNCT
ajb-31	35	1	_	_	PUNCT
ajb-31	36	1	_	_	PUNCT
ajb-31	37	1	_	_	PUNCT
ajb-31	38	1	_	_	PUNCT
ajb-31	39	1	_	_	PUNCT
ajb-31	40	1	_	_	PUNCT
ajb-31	41	1	_	_	PUNCT
ajb-31	42	1	_	_	PUNCT
ajb-31	43	1	_	_	PUNCT
ajb-31	44	1	_	_	PUNCT
ajb-31	45	1	_	_	PUNCT
ajb-31	46	1	_	_	PUNCT
ajb-31	47	1	_	_	PUNCT
ajb-31	48	1	_	_	PUNCT
ajb-31	49	1	_	_	PUNCT
ajb-31	50	1	_	_	PUNCT
ajb-31	51	1	_	_	PUNCT
ajb-31	52	1	_	_	PUNCT
ajb-31	53	1	_	_	PUNCT
ajb-31	54	1	_	_	PUNCT
ajb-31	55	1	*	*	PUNCT
ajb-31	55	2	corresponding	correspond	VERB
ajb-31	55	3	author	author	NOUN
ajb-31	55	4	:	:	PUNCT
ajb-31	55	5	ga4082@siu.edu	ga4082@siu.edu	VERB
ajb-31	55	6	206	206	NUM
ajb-31	55	7	abstract	abstract	ADJ
ajb-31	55	8	identification	identification	NOUN
ajb-31	55	9	of	of	ADP
ajb-31	55	10	single	single	ADJ
ajb-31	55	11	nucleotide	nucleotide	ADJ
ajb-31	55	12	polymorphisms	polymorphism	NOUN
ajb-31	55	13	(	(	PUNCT
ajb-31	55	14	snps	snps	PROPN
ajb-31	55	15	)	)	PUNCT
ajb-31	55	16	and	and	CCONJ
ajb-31	55	17	insertion	insertion	NOUN
ajb-31	55	18	-	-	PUNCT
ajb-31	55	19	deletion	deletion	NOUN
ajb-31	55	20	mutations	mutation	NOUN
ajb-31	55	21	are	be	AUX
ajb-31	55	22	important	important	ADJ
ajb-31	55	23	for	for	ADP
ajb-31	55	24	discovering	discover	VERB
ajb-31	55	25	the	the	DET
ajb-31	55	26	connection	connection	NOUN
ajb-31	55	27	between	between	ADP
ajb-31	55	28	the	the	DET
ajb-31	55	29	genetic	genetic	ADJ
ajb-31	55	30	mutations	mutation	NOUN
ajb-31	55	31	and	and	CCONJ
ajb-31	55	32	complex	complex	ADJ
ajb-31	55	33	diseases	disease	NOUN
ajb-31	55	34	.	.	PUNCT
ajb-31	56	1	the	the	DET
ajb-31	56	2	objective	objective	NOUN
ajb-31	56	3	of	of	ADP
ajb-31	56	4	this	this	DET
ajb-31	56	5	study	study	NOUN
ajb-31	56	6	was	be	AUX
ajb-31	56	7	to	to	PART
ajb-31	56	8	develop	develop	VERB
ajb-31	56	9	a	a	DET
ajb-31	56	10	sensitive	sensitive	ADJ
ajb-31	56	11	and	and	CCONJ
ajb-31	56	12	accurate	accurate	ADJ
ajb-31	56	13	computational	computational	ADJ
ajb-31	56	14	method	method	NOUN
ajb-31	56	15	for	for	ADP
ajb-31	56	16	snp	snp	ADJ
ajb-31	56	17	detection	detection	NOUN
ajb-31	56	18	among	among	ADP
ajb-31	56	19	multiple	multiple	ADJ
ajb-31	56	20	sequence	sequence	NOUN
ajb-31	56	21	alignments	alignment	NOUN
ajb-31	56	22	(	(	PUNCT
ajb-31	56	23	msas	msa	NOUN
ajb-31	56	24	)	)	PUNCT
ajb-31	56	25	to	to	PART
ajb-31	56	26	be	be	AUX
ajb-31	56	27	run	run	VERB
ajb-31	56	28	on	on	ADP
ajb-31	56	29	microsoft	microsoft	PROPN
ajb-31	56	30	office	office	PROPN
ajb-31	56	31	suitetm	suitetm	NOUN
ajb-31	56	32	and	and	CCONJ
ajb-31	56	33	windowstm	windowstm	PROPN
ajb-31	56	34	.	.	PUNCT
ajb-31	57	1	the	the	DET
ajb-31	57	2	snp	snp	NOUN
ajb-31	57	3	-	-	NOUN
ajb-31	57	4	evaluator	evaluator	NOUN
ajb-31	57	5	,	,	PUNCT
ajb-31	57	6	was	be	AUX
ajb-31	57	7	designed	design	VERB
ajb-31	57	8	to	to	PART
ajb-31	57	9	simulate	simulate	VERB
ajb-31	57	10	the	the	DET
ajb-31	57	11	process	process	NOUN
ajb-31	57	12	of	of	ADP
ajb-31	57	13	human	human	ADJ
ajb-31	57	14	eye	eye	PROPN
ajb-31	57	15	visual	visual	ADJ
ajb-31	57	16	change	change	NOUN
ajb-31	57	17	-	-	PUNCT
ajb-31	57	18	identification	identification	NOUN
ajb-31	57	19	.	.	PUNCT
ajb-31	58	1	analysis	analysis	NOUN
ajb-31	58	2	of	of	ADP
ajb-31	58	3	three	three	NUM
ajb-31	58	4	82	82	NUM
ajb-31	58	5	-	-	PUNCT
ajb-31	58	6	kbp	kbp	NOUN
ajb-31	58	7	genomic	genomic	NOUN
ajb-31	58	8	loci	loci	NOUN
ajb-31	58	9	derived	derive	VERB
ajb-31	58	10	from	from	ADP
ajb-31	58	11	sanger	sanger	PROPN
ajb-31	58	12	sequencing	sequencing	NOUN
ajb-31	58	13	and	and	CCONJ
ajb-31	58	14	the	the	DET
ajb-31	58	15	corresponding	correspond	VERB
ajb-31	58	16	snps	snps	PROPN
ajb-31	58	17	from	from	ADP
ajb-31	58	18	31	31	NUM
ajb-31	58	19	genomes	genome	NOUN
ajb-31	58	20	from	from	ADP
ajb-31	58	21	illuminatm	illuminatm	ADJ
ajb-31	58	22	sequencing	sequencing	NOUN
ajb-31	58	23	of	of	ADP
ajb-31	58	24	soybean	soybean	NOUN
ajb-31	58	25	(	(	PUNCT
ajb-31	58	26	glycine	glycine	NOUN
ajb-31	58	27	max	max	PROPN
ajb-31	58	28	l.	l.	PROPN
ajb-31	58	29	merr	merr	PROPN
ajb-31	58	30	.	.	PUNCT
ajb-31	58	31	)	)	PUNCT
ajb-31	58	32	demonstrated	demonstrate	VERB
ajb-31	58	33	that	that	SCONJ
ajb-31	58	34	the	the	DET
ajb-31	58	35	snp	snp	PROPN
ajb-31	58	36	-	-	PUNCT
ajb-31	58	37	e	e	PROPN
ajb-31	58	38	was	be	AUX
ajb-31	58	39	an	an	DET
ajb-31	58	40	effective	effective	ADJ
ajb-31	58	41	method	method	NOUN
ajb-31	58	42	for	for	ADP
ajb-31	58	43	medium	medium	ADJ
ajb-31	58	44	-	-	PUNCT
ajb-31	58	45	scale	scale	NOUN
ajb-31	58	46	genomic	genomic	NOUN
ajb-31	58	47	research	research	NOUN
ajb-31	58	48	.	.	PUNCT
ajb-31	59	1	keywords	keyword	NOUN
ajb-31	59	2	:	:	PUNCT
ajb-31	59	3	single	single	ADJ
ajb-31	59	4	nucleotide	nucleotide	ADJ
ajb-31	59	5	polymorphism	polymorphism	NOUN
ajb-31	59	6	(	(	PUNCT
ajb-31	59	7	snp	snp	PROPN
ajb-31	59	8	)	)	PUNCT
ajb-31	59	9	;	;	PUNCT
ajb-31	59	10	sanger	sanger	PROPN
ajb-31	59	11	;	;	PUNCT
ajb-31	59	12	illuminatm	illuminatm	ADJ
ajb-31	59	13	;	;	PUNCT
ajb-31	59	14	cultivar	cultivar	NOUN
ajb-31	59	15	;	;	PUNCT
ajb-31	59	16	variation	variation	NOUN
ajb-31	59	17	.	.	PUNCT
ajb-31	60	1	introuction	introuction	NOUN
ajb-31	60	2	identification	identification	NOUN
ajb-31	60	3	of	of	ADP
ajb-31	60	4	single	single	ADJ
ajb-31	60	5	nucleotide	nucleotide	ADJ
ajb-31	60	6	polymorphisms	polymorphism	NOUN
ajb-31	60	7	(	(	PUNCT
ajb-31	60	8	snps	snps	PROPN
ajb-31	60	9	)	)	PUNCT
ajb-31	60	10	in	in	ADP
ajb-31	60	11	multiple	multiple	ADJ
ajb-31	60	12	sequence	sequence	NOUN
ajb-31	60	13	alignments	alignment	NOUN
ajb-31	60	14	(	(	PUNCT
ajb-31	60	15	msa	msa	PROPN
ajb-31	60	16	)	)	PUNCT
ajb-31	60	17	involves	involve	VERB
ajb-31	60	18	looking	look	VERB
ajb-31	60	19	across	across	ADP
ajb-31	60	20	msa	msa	PROPN
ajb-31	60	21	and	and	CCONJ
ajb-31	60	22	identifying	identify	VERB
ajb-31	60	23	base	base	NOUN
ajb-31	60	24	discrepancies	discrepancy	NOUN
ajb-31	60	25	(	(	PUNCT
ajb-31	60	26	wegrzyn	wegrzyn	NOUN
ajb-31	60	27	et	et	NOUN
ajb-31	60	28	al	al	PROPN
ajb-31	60	29	.	.	PROPN
ajb-31	60	30	,	,	PUNCT
ajb-31	60	31	2009	2009	NUM
ajb-31	60	32	)	)	PUNCT
ajb-31	60	33	.	.	PUNCT
ajb-31	61	1	snps	snps	PROPN
ajb-31	61	2	and	and	CCONJ
ajb-31	61	3	mutations	mutation	NOUN
ajb-31	61	4	among	among	ADP
ajb-31	61	5	highly	highly	ADV
ajb-31	61	6	polymorphic	polymorphic	ADJ
ajb-31	61	7	regions	region	NOUN
ajb-31	61	8	are	be	AUX
ajb-31	61	9	often	often	ADV
ajb-31	61	10	associated	associate	VERB
ajb-31	61	11	with	with	ADP
ajb-31	61	12	useful	useful	ADJ
ajb-31	61	13	traits	trait	NOUN
ajb-31	61	14	such	such	ADJ
ajb-31	61	15	as	as	ADP
ajb-31	61	16	resistance	resistance	NOUN
ajb-31	61	17	to	to	ADP
ajb-31	61	18	disease	disease	NOUN
ajb-31	61	19	(	(	PUNCT
ajb-31	61	20	ruben	ruben	PROPN
ajb-31	61	21	et	et	PROPN
ajb-31	61	22	al	al	PROPN
ajb-31	61	23	.	.	PROPN
ajb-31	61	24	,	,	PUNCT
ajb-31	61	25	2006	2006	NUM
ajb-31	61	26	;	;	PUNCT
ajb-31	61	27	srour	srour	PRON
ajb-31	61	28	et	et	PROPN
ajb-31	61	29	al	al	PROPN
ajb-31	61	30	.	.	PROPN
ajb-31	61	31	,	,	PUNCT
ajb-31	61	32	2012	2012	NUM
ajb-31	61	33	)	)	PUNCT
ajb-31	61	34	and	and	CCONJ
ajb-31	61	35	identification	identification	NOUN
ajb-31	61	36	of	of	ADP
ajb-31	61	37	them	they	PRON
ajb-31	61	38	is	be	AUX
ajb-31	61	39	important	important	ADJ
ajb-31	61	40	to	to	PART
ajb-31	61	41	discover	discover	VERB
ajb-31	61	42	the	the	DET
ajb-31	61	43	link	link	NOUN
ajb-31	61	44	between	between	ADP
ajb-31	61	45	the	the	DET
ajb-31	61	46	genetic	genetic	ADJ
ajb-31	61	47	mutations	mutation	NOUN
ajb-31	61	48	and	and	CCONJ
ajb-31	61	49	complex	complex	ADJ
ajb-31	61	50	diseases	disease	NOUN
ajb-31	61	51	(	(	PUNCT
ajb-31	61	52	zhang	zhang	X
ajb-31	61	53	et	et	PROPN
ajb-31	61	54	al	al	PROPN
ajb-31	61	55	.	.	PROPN
ajb-31	61	56	,	,	PUNCT
ajb-31	61	57	2005	2005	NUM
ajb-31	61	58	)	)	PUNCT
ajb-31	61	59	.	.	PUNCT
ajb-31	62	1	the	the	DET
ajb-31	62	2	genomes	genome	NOUN
ajb-31	62	3	of	of	ADP
ajb-31	62	4	crop	crop	NOUN
ajb-31	62	5	plants	plant	NOUN
ajb-31	62	6	,	,	PUNCT
ajb-31	62	7	animals	animal	NOUN
ajb-31	62	8	and	and	CCONJ
ajb-31	62	9	humans	human	NOUN
ajb-31	62	10	contain	contain	VERB
ajb-31	62	11	regions	region	NOUN
ajb-31	62	12	of	of	ADP
ajb-31	62	13	diversity	diversity	NOUN
ajb-31	62	14	much	much	ADV
ajb-31	62	15	less	less	ADJ
ajb-31	62	16	than	than	ADP
ajb-31	62	17	98	98	NUM
ajb-31	62	18	%	%	NOUN
ajb-31	62	19	identity	identity	NOUN
ajb-31	62	20	among	among	ADP
ajb-31	62	21	individuals	individual	NOUN
ajb-31	62	22	interspersed	intersperse	VERB
ajb-31	62	23	in	in	ADP
ajb-31	62	24	more	more	ADJ
ajb-31	62	25	conserved	conserved	ADJ
ajb-31	62	26	region	region	NOUN
ajb-31	62	27	.	.	PUNCT
ajb-31	63	1	one	one	NUM
ajb-31	63	2	such	such	ADJ
ajb-31	63	3	region	region	NOUN
ajb-31	63	4	is	be	AUX
ajb-31	63	5	the	the	DET
ajb-31	63	6	rhg1	rhg1	PROPN
ajb-31	63	7	/	/	SYM
ajb-31	63	8	rfs2	rfs2	PROPN
ajb-31	63	9	locus	locus	NOUN
ajb-31	63	10	of	of	ADP
ajb-31	63	11	soybean	soybean	NOUN
ajb-31	63	12	(	(	PUNCT
ajb-31	63	13	glycine	glycine	NOUN
ajb-31	63	14	max	max	PROPN
ajb-31	63	15	l.	l.	PROPN
ajb-31	63	16	merr	merr	PROPN
ajb-31	63	17	.	.	PUNCT
ajb-31	63	18	)	)	PUNCT
ajb-31	63	19	which	which	PRON
ajb-31	63	20	appeared	appear	VERB
ajb-31	63	21	to	to	PART
ajb-31	63	22	span	span	VERB
ajb-31	63	23	over	over	ADP
ajb-31	63	24	150kbp	150kbp	NUM
ajb-31	63	25	and	and	CCONJ
ajb-31	63	26	encompassed	encompass	VERB
ajb-31	63	27	more	more	ADJ
ajb-31	63	28	than	than	ADP
ajb-31	63	29	20	20	NUM
ajb-31	63	30	genes	gene	NOUN
ajb-31	63	31	.	.	PUNCT
ajb-31	64	1	various	various	ADJ
ajb-31	64	2	methods	method	NOUN
ajb-31	64	3	have	have	AUX
ajb-31	64	4	been	be	AUX
ajb-31	64	5	developed	develop	VERB
ajb-31	64	6	(	(	PUNCT
ajb-31	64	7	chang	chang	PROPN
ajb-31	64	8	,	,	PUNCT
ajb-31	64	9	2009	2009	NUM
ajb-31	64	10	)	)	PUNCT
ajb-31	64	11	and	and	CCONJ
ajb-31	64	12	already	already	ADV
ajb-31	64	13	available	available	ADJ
ajb-31	64	14	for	for	ADP
ajb-31	64	15	snp	snp	ADJ
ajb-31	64	16	detection	detection	NOUN
ajb-31	64	17	and	and	CCONJ
ajb-31	64	18	calling	call	VERB
ajb-31	64	19	single	single	ADJ
ajb-31	64	20	-	-	PUNCT
ajb-31	64	21	nucleotide	nucleotide	NOUN
ajb-31	64	22	polymorphisms	polymorphism	NOUN
ajb-31	64	23	from	from	ADP
ajb-31	64	24	next	next	ADJ
ajb-31	64	25	generation	generation	NOUN
ajb-31	64	26	sequencing	sequence	VERB
ajb-31	64	27	data	datum	NOUN
ajb-31	64	28	(	(	PUNCT
ajb-31	64	29	depristo	depristo	PROPN
ajb-31	64	30	et	et	PROPN
ajb-31	64	31	al	al	PROPN
ajb-31	64	32	.	.	PROPN
ajb-31	64	33	,	,	PUNCT
ajb-31	64	34	2011	2011	NUM
ajb-31	64	35	;	;	PUNCT
ajb-31	64	36	kobold	kobold	PROPN
ajb-31	64	37	et	et	PROPN
ajb-31	64	38	al	al	PROPN
ajb-31	64	39	.	.	PROPN
ajb-31	64	40	,	,	PUNCT
ajb-31	64	41	2009	2009	NUM
ajb-31	64	42	;	;	PUNCT
ajb-31	64	43	li	li	PROPN
ajb-31	64	44	et	et	PROPN
ajb-31	64	45	al	al	PROPN
ajb-31	64	46	.	.	PROPN
ajb-31	64	47	,	,	PUNCT
ajb-31	64	48	2009	2009	NUM
ajb-31	64	49	;	;	PUNCT
ajb-31	64	50	nijveen	nijveen	PROPN
ajb-31	64	51	et	et	PROPN
ajb-31	64	52	al	al	PROPN
ajb-31	64	53	.	.	PROPN
ajb-31	64	54	,	,	PUNCT
ajb-31	64	55	2013	2013	NUM
ajb-31	64	56	)	)	PUNCT
ajb-31	64	57	however	however	ADV
ajb-31	64	58	,	,	PUNCT
ajb-31	64	59	most	most	ADJ
ajb-31	64	60	of	of	ADP
ajb-31	64	61	these	these	DET
ajb-31	64	62	methods	method	NOUN
ajb-31	64	63	require	require	VERB
ajb-31	64	64	expensive	expensive	ADJ
ajb-31	64	65	highdepth	highdepth	NOUN
ajb-31	64	66	sequencing	sequence	VERB
ajb-31	64	67	to	to	PART
ajb-31	64	68	perform	perform	VERB
ajb-31	64	69	satisfactory	satisfactory	ADJ
ajb-31	64	70	(	(	PUNCT
ajb-31	64	71	xu	xu	INTJ
ajb-31	64	72	et	et	PROPN
ajb-31	64	73	al	al	PROPN
ajb-31	64	74	.	.	PROPN
ajb-31	64	75	,	,	PUNCT
ajb-31	64	76	2012	2012	NUM
ajb-31	64	77	)	)	PUNCT
ajb-31	64	78	or	or	CCONJ
ajb-31	64	79	they	they	PRON
ajb-31	64	80	are	be	AUX
ajb-31	64	81	java	java	NOUN
ajb-31	64	82	-	-	PUNCT
ajb-31	64	83	based	base	VERB
ajb-31	64	84	programs	program	NOUN
ajb-31	64	85	such	such	ADJ
ajb-31	64	86	as	as	ADP
ajb-31	64	87	seq	seq	NOUN
ajb-31	64	88	-	-	PUNCT
ajb-31	64	89	snping	snpe	VERB
ajb-31	64	90	(	(	PUNCT
ajb-31	64	91	chang	chang	PROPN
ajb-31	64	92	et	et	PROPN
ajb-31	64	93	al	al	PROPN
ajb-31	64	94	.	.	PROPN
ajb-31	64	95	,	,	PUNCT
ajb-31	64	96	2009	2009	NUM
ajb-31	64	97	)	)	PUNCT
ajb-31	64	98	or	or	CCONJ
ajb-31	64	99	they	they	PRON
ajb-31	64	100	require	require	VERB
ajb-31	64	101	linux	linux	PROPN
ajb-31	64	102	command	command	NOUN
ajb-31	64	103	line	line	NOUN
ajb-31	64	104	skills	skill	NOUN
ajb-31	64	105	to	to	PART
ajb-31	64	106	run	run	VERB
ajb-31	64	107	and	and	CCONJ
ajb-31	64	108	a	a	DET
ajb-31	64	109	separate	separate	ADJ
ajb-31	64	110	program	program	NOUN
ajb-31	64	111	to	to	PART
ajb-31	64	112	visualize	visualize	VERB
ajb-31	64	113	the	the	DET
ajb-31	64	114	results	result	NOUN
ajb-31	64	115	(	(	PUNCT
ajb-31	64	116	nijveen	nijveen	PROPN
ajb-31	64	117	et	et	PROPN
ajb-31	64	118	al	al	PROPN
ajb-31	64	119	.	.	PROPN
ajb-31	64	120	,	,	PUNCT
ajb-31	64	121	2013	2013	NUM
ajb-31	64	122	)	)	PUNCT
ajb-31	64	123	or	or	CCONJ
ajb-31	64	124	requires	require	VERB
ajb-31	64	125	phred	phre	VERB
ajb-31	64	126	commands	command	NOUN
ajb-31	64	127	in	in	ADP
ajb-31	64	128	case	case	NOUN
ajb-31	64	129	of	of	ADP
ajb-31	64	130	pinesap	pinesap	NOUN
ajb-31	64	131	.	.	PUNCT
ajb-31	65	1	so	so	ADV
ajb-31	65	2	,	,	PUNCT
ajb-31	65	3	there	there	PRON
ajb-31	65	4	was	be	VERB
ajb-31	65	5	a	a	DET
ajb-31	65	6	need	need	NOUN
ajb-31	65	7	for	for	ADP
ajb-31	65	8	a	a	DET
ajb-31	65	9	method	method	NOUN
ajb-31	65	10	to	to	PART
ajb-31	65	11	efficiently	efficiently	ADV
ajb-31	65	12	and	and	CCONJ
ajb-31	65	13	accurately	accurately	ADV
ajb-31	65	14	call	call	VERB
ajb-31	65	15	,	,	PUNCT
ajb-31	65	16	analyze	analyze	VERB
ajb-31	65	17	and	and	CCONJ
ajb-31	65	18	identify	identify	VERB
ajb-31	65	19	snps	snps	PROPN
ajb-31	65	20	in	in	ADP
ajb-31	65	21	msas	msas	PROPN
ajb-31	65	22	for	for	ADP
ajb-31	65	23	medium	medium	ADJ
ajb-31	65	24	scale	scale	NOUN
ajb-31	65	25	loci	locus	NOUN
ajb-31	65	26	,	,	PUNCT
ajb-31	65	27	~	~	PUNCT
ajb-31	65	28	100	100	NUM
ajb-31	65	29	kbp	kbp	NOUN
ajb-31	65	30	.	.	PUNCT
ajb-31	66	1	the	the	DET
ajb-31	66	2	method	method	NOUN
ajb-31	66	3	needed	need	VERB
ajb-31	66	4	to	to	PART
ajb-31	66	5	be	be	AUX
ajb-31	66	6	run	run	VERB
ajb-31	66	7	on	on	ADP
ajb-31	66	8	a	a	DET
ajb-31	66	9	popular	popular	ADJ
ajb-31	66	10	and	and	CCONJ
ajb-31	66	11	user	user	NOUN
ajb-31	66	12	friendly	friendly	ADJ
ajb-31	66	13	system	system	NOUN
ajb-31	66	14	such	such	ADJ
ajb-31	66	15	as	as	ADP
ajb-31	66	16	microsoft	microsoft	PROPN
ajb-31	66	17	office	office	PROPN
ajb-31	66	18	suitetm	suitetm	NOUN
ajb-31	66	19	to	to	PART
ajb-31	66	20	prevent	prevent	VERB
ajb-31	66	21	the	the	DET
ajb-31	66	22	need	need	NOUN
ajb-31	66	23	for	for	ADP
ajb-31	66	24	complex	complex	ADJ
ajb-31	66	25	and	and	CCONJ
ajb-31	66	26	costly	costly	ADJ
ajb-31	66	27	operating	operating	NOUN
ajb-31	66	28	system	system	NOUN
ajb-31	66	29	such	such	ADJ
ajb-31	66	30	as	as	ADP
ajb-31	66	31	unix	unix	NOUN
ajb-31	66	32	.	.	PUNCT
ajb-31	67	1	snp	snp	ADJ
ajb-31	67	2	-	-	NOUN
ajb-31	67	3	evaluator	evaluator	NOUN
ajb-31	67	4	was	be	AUX
ajb-31	67	5	created	create	VERB
ajb-31	67	6	and	and	CCONJ
ajb-31	67	7	demonstrated	demonstrate	VERB
ajb-31	67	8	that	that	SCONJ
ajb-31	67	9	can	can	AUX
ajb-31	67	10	accurately	accurately	ADV
ajb-31	67	11	align	align	VERB
ajb-31	67	12	relatively	relatively	ADV
ajb-31	67	13	diverse	diverse	ADJ
ajb-31	67	14	sequences	sequence	NOUN
ajb-31	67	15	and	and	CCONJ
ajb-31	67	16	allow	allow	VERB
ajb-31	67	17	researchers	researcher	NOUN
ajb-31	67	18	to	to	PART
ajb-31	67	19	identify	identify	VERB
ajb-31	67	20	this	this	PRON
ajb-31	67	21	is	be	AUX
ajb-31	67	22	an	an	DET
ajb-31	67	23	open	open	ADJ
ajb-31	67	24	access	access	NOUN
ajb-31	67	25	article	article	NOUN
ajb-31	67	26	distributed	distribute	VERB
ajb-31	67	27	under	under	ADP
ajb-31	67	28	the	the	DET
ajb-31	67	29	terms	term	NOUN
ajb-31	67	30	of	of	ADP
ajb-31	67	31	the	the	DET
ajb-31	67	32	creative	creative	ADJ
ajb-31	67	33	commons	common	NOUN
ajb-31	67	34	attribution	attribution	NOUN
ajb-31	67	35	license	license	NOUN
ajb-31	67	36	(	(	PUNCT
ajb-31	67	37	http://creativecommons.org/licenses/by/3.0/	http://creativecommons.org/licenses/by/3.0/	PROPN
ajb-31	67	38	)	)	PUNCT
ajb-31	67	39	,	,	PUNCT
ajb-31	67	40	which	which	PRON
ajb-31	67	41	permits	permit	VERB
ajb-31	67	42	unrestricted	unrestricted	ADJ
ajb-31	67	43	use	use	NOUN
ajb-31	67	44	,	,	PUNCT
ajb-31	67	45	distribution	distribution	NOUN
ajb-31	67	46	,	,	PUNCT
ajb-31	67	47	and	and	CCONJ
ajb-31	67	48	reproduction	reproduction	NOUN
ajb-31	67	49	in	in	ADP
ajb-31	67	50	any	any	DET
ajb-31	67	51	medium	medium	NOUN
ajb-31	67	52	,	,	PUNCT
ajb-31	67	53	provided	provide	VERB
ajb-31	67	54	the	the	DET
ajb-31	67	55	original	original	ADJ
ajb-31	67	56	work	work	NOUN
ajb-31	67	57	is	be	AUX
ajb-31	67	58	properly	properly	ADV
ajb-31	67	59	cited	cite	VERB
ajb-31	67	60	.	.	PUNCT
ajb-31	68	1	a	a	DET
ajb-31	68	2	tla	tla	NOUN
ajb-31	68	3	s	s	PART
ajb-31	68	4	jo	jo	NOUN
ajb-31	68	5	ur	ur	INTJ
ajb-31	68	6	na	na	NOUN
ajb-31	69	1	l	l	NOUN
ajb-31	69	2	o	o	X
ajb-31	70	1	f	f	X
ajb-31	70	2	bi	bi	NOUN
ajb-31	70	3	ol	ol	PROPN
ajb-31	70	4	og	og	PROPN
ajb-31	70	5	y	y	PROPN
ajb-31	70	6	is	be	AUX
ajb-31	70	7	sn	sn	PROPN
ajb-31	70	8	2	2	NUM
ajb-31	70	9	15	15	NUM
ajb-31	70	10	891	891	NUM
ajb-31	70	11	51	51	NUM
ajb-31	70	12	.	.	PUNCT
ajb-31	71	1	p	p	X
ajb-31	71	2	ub	ub	ADJ
ajb-31	71	3	lis	li	NOUN
ajb-31	71	4	he	he	PRON
ajb-31	71	5	d	d	NOUN
ajb-31	71	6	by	by	ADP
ajb-31	71	7	a	a	DET
ajb-31	71	8	tla	tla	NOUN
ajb-31	71	9	s	s	AUX
ajb-31	71	10	pu	pu	INTJ
ajb-31	71	11	bl	bl	PROPN
ajb-31	71	12	ish	ish	VERB
ajb-31	71	13	in	in	ADP
ajb-31	71	14	g	g	PROPN
ajb-31	71	15	,	,	PUNCT
ajb-31	72	1	l	l	NOUN
ajb-31	72	2	p	p	X
ajb-31	73	1	(	(	PUNCT
ajb-31	73	2	w	w	PROPN
ajb-31	73	3	w	w	PROPN
ajb-31	73	4	w	w	PROPN
ajb-31	73	5	.a	.a	PROPN
ajb-31	73	6	tla	tla	AUX
ajb-31	73	7	spu	spu	PROPN
ajb-31	73	8	bl	bl	PROPN
ajb-31	73	9	ish	ish	VERB
ajb-31	73	10	in	in	ADP
ajb-31	73	11	g.	g.	PROPN
ajb-31	73	12	or	or	CCONJ
ajb-31	73	13	g	g	PROPN
ajb-31	73	14	)	)	PUNCT
ajb-31	73	15	207	207	NUM
ajb-31	73	16	snps	snps	NOUN
ajb-31	73	17	of	of	ADP
ajb-31	73	18	interest	interest	NOUN
ajb-31	73	19	for	for	ADP
ajb-31	73	20	further	further	ADJ
ajb-31	73	21	analyses	analysis	NOUN
ajb-31	73	22	.	.	PUNCT
ajb-31	74	1	snp	snp	ADJ
ajb-31	74	2	-	-	PUNCT
ajb-31	74	3	e	e	PROPN
ajb-31	74	4	,	,	PUNCT
ajb-31	74	5	has	have	VERB
ajb-31	74	6	the	the	DET
ajb-31	74	7	ability	ability	NOUN
ajb-31	74	8	to	to	PART
ajb-31	74	9	search	search	VERB
ajb-31	74	10	among	among	ADP
ajb-31	74	11	msa	msa	PROPN
ajb-31	74	12	and	and	CCONJ
ajb-31	74	13	recognize	recognize	VERB
ajb-31	74	14	base	base	NOUN
ajb-31	74	15	polymorphisms	polymorphism	NOUN
ajb-31	74	16	.	.	PUNCT
ajb-31	75	1	it	it	PRON
ajb-31	75	2	is	be	AUX
ajb-31	75	3	capable	capable	ADJ
ajb-31	75	4	of	of	ADP
ajb-31	75	5	making	make	VERB
ajb-31	75	6	a	a	DET
ajb-31	75	7	confident	confident	ADJ
ajb-31	75	8	identification	identification	NOUN
ajb-31	75	9	(	(	PUNCT
ajb-31	75	10	base	base	NOUN
ajb-31	75	11	-	-	PUNCT
ajb-31	75	12	call	call	NOUN
ajb-31	75	13	)	)	PUNCT
ajb-31	75	14	because	because	SCONJ
ajb-31	75	15	visual	visual	ADJ
ajb-31	75	16	confirmation	confirmation	NOUN
ajb-31	75	17	is	be	AUX
ajb-31	75	18	not	not	PART
ajb-31	75	19	a	a	DET
ajb-31	75	20	reliable	reliable	ADJ
ajb-31	75	21	option	option	NOUN
ajb-31	75	22	for	for	ADP
ajb-31	75	23	sequences	sequence	NOUN
ajb-31	75	24	from	from	ADP
ajb-31	75	25	next	next	ADJ
ajb-31	75	26	generation	generation	NOUN
ajb-31	75	27	sequencer	sequencer	NOUN
ajb-31	75	28	with	with	ADP
ajb-31	75	29	higher	high	ADJ
ajb-31	75	30	number	number	NOUN
ajb-31	75	31	of	of	ADP
ajb-31	75	32	sequences	sequence	NOUN
ajb-31	75	33	at	at	ADP
ajb-31	75	34	the	the	DET
ajb-31	75	35	cost	cost	NOUN
ajb-31	75	36	of	of	ADP
ajb-31	75	37	higher	high	ADJ
ajb-31	75	38	error	error	NOUN
ajb-31	75	39	rates	rate	NOUN
ajb-31	75	40	and	and	CCONJ
ajb-31	75	41	patchy	patchy	ADJ
ajb-31	75	42	sequence	sequence	NOUN
ajb-31	75	43	coverage	coverage	NOUN
ajb-31	75	44	.	.	PUNCT
ajb-31	76	1	also	also	ADV
ajb-31	76	2	,	,	PUNCT
ajb-31	76	3	this	this	DET
ajb-31	76	4	method	method	NOUN
ajb-31	76	5	needed	need	VERB
ajb-31	76	6	to	to	PART
ajb-31	76	7	give	give	VERB
ajb-31	76	8	the	the	DET
ajb-31	76	9	young	young	ADJ
ajb-31	76	10	researchers	researcher	NOUN
ajb-31	76	11	who	who	PRON
ajb-31	76	12	are	be	AUX
ajb-31	76	13	still	still	ADV
ajb-31	76	14	enhancing	enhance	VERB
ajb-31	76	15	their	their	PRON
ajb-31	76	16	skills	skill	NOUN
ajb-31	76	17	in	in	ADP
ajb-31	76	18	different	different	ADJ
ajb-31	76	19	programming	programming	NOUN
ajb-31	76	20	languages	language	NOUN
ajb-31	76	21	and	and	CCONJ
ajb-31	76	22	would	would	AUX
ajb-31	76	23	like	like	VERB
ajb-31	76	24	to	to	PART
ajb-31	76	25	work	work	VERB
ajb-31	76	26	with	with	ADP
ajb-31	76	27	medium	medium	ADJ
ajb-31	76	28	-	-	PUNCT
ajb-31	76	29	scale	scale	NOUN
ajb-31	76	30	genomic	genomic	NOUN
ajb-31	76	31	sequences	sequence	NOUN
ajb-31	76	32	,	,	PUNCT
ajb-31	76	33	more	more	ADJ
ajb-31	76	34	flexibility	flexibility	NOUN
ajb-31	76	35	for	for	ADP
ajb-31	76	36	next	next	ADJ
ajb-31	76	37	generation	generation	NOUN
ajb-31	76	38	data	datum	NOUN
ajb-31	76	39	analysis	analysis	NOUN
ajb-31	76	40	.	.	PUNCT
ajb-31	77	1	furthermore	furthermore	ADV
ajb-31	77	2	,	,	PUNCT
ajb-31	77	3	by	by	ADP
ajb-31	77	4	applying	apply	VERB
ajb-31	77	5	this	this	DET
ajb-31	77	6	method	method	NOUN
ajb-31	77	7	,	,	PUNCT
ajb-31	77	8	researchers	researcher	NOUN
ajb-31	77	9	have	have	VERB
ajb-31	77	10	the	the	DET
ajb-31	77	11	ability	ability	NOUN
ajb-31	77	12	to	to	PART
ajb-31	77	13	associate	associate	VERB
ajb-31	77	14	a	a	DET
ajb-31	77	15	specific	specific	ADJ
ajb-31	77	16	alignment	alignment	NOUN
ajb-31	77	17	nucleotide	nucleotide	NOUN
ajb-31	77	18	identification	identification	NOUN
ajb-31	77	19	number	number	NOUN
ajb-31	77	20	to	to	ADP
ajb-31	77	21	each	each	DET
ajb-31	77	22	nucleotide	nucleotide	NOUN
ajb-31	77	23	(	(	PUNCT
ajb-31	77	24	nucleotide	nucleotide	NOUN
ajb-31	77	25	’s	’s	NOUN
ajb-31	77	26	i	i	PROPN
ajb-31	77	27	d	d	PROPN
ajb-31	77	28	)	)	PUNCT
ajb-31	77	29	,	,	PUNCT
ajb-31	77	30	customize	customize	VERB
ajb-31	77	31	data	datum	NOUN
ajb-31	77	32	analysis	analysis	NOUN
ajb-31	77	33	and	and	CCONJ
ajb-31	77	34	apply	apply	VERB
ajb-31	77	35	functions	function	NOUN
ajb-31	77	36	and	and	CCONJ
ajb-31	77	37	formulas	formula	NOUN
ajb-31	77	38	on	on	ADP
ajb-31	77	39	data	datum	NOUN
ajb-31	77	40	(	(	PUNCT
ajb-31	77	41	nucleotides	nucleotide	NOUN
ajb-31	77	42	)	)	PUNCT
ajb-31	77	43	.	.	PUNCT
ajb-31	78	1	moreover	moreover	ADV
ajb-31	78	2	,	,	PUNCT
ajb-31	78	3	this	this	DET
ajb-31	78	4	method	method	NOUN
ajb-31	78	5	functions	function	NOUN
ajb-31	78	6	as	as	ADP
ajb-31	78	7	a	a	DET
ajb-31	78	8	visible	visible	ADJ
ajb-31	78	9	tool	tool	NOUN
ajb-31	78	10	due	due	ADP
ajb-31	78	11	to	to	ADP
ajb-31	78	12	its	its	PRON
ajb-31	78	13	table	table	NOUN
ajb-31	78	14	format	format	NOUN
ajb-31	78	15	that	that	PRON
ajb-31	78	16	can	can	AUX
ajb-31	78	17	provide	provide	VERB
ajb-31	78	18	snp	snp	NOUN
ajb-31	78	19	-	-	NOUN
ajb-31	78	20	e	e	VERB
ajb-31	78	21	the	the	DET
ajb-31	78	22	capability	capability	NOUN
ajb-31	78	23	to	to	PART
ajb-31	78	24	simulate	simulate	VERB
ajb-31	78	25	the	the	DET
ajb-31	78	26	process	process	NOUN
ajb-31	78	27	of	of	ADP
ajb-31	78	28	human	human	ADJ
ajb-31	78	29	eye	eye	PROPN
ajb-31	78	30	visual	visual	ADJ
ajb-31	78	31	change	change	NOUN
ajb-31	78	32	-	-	PUNCT
ajb-31	78	33	identification	identification	NOUN
ajb-31	78	34	.	.	PUNCT
ajb-31	79	1	materials	material	NOUN
ajb-31	79	2	and	and	CCONJ
ajb-31	79	3	methods	method	NOUN
ajb-31	79	4	the	the	DET
ajb-31	79	5	genomic	genomic	ADJ
ajb-31	79	6	dna	dna	PROPN
ajb-31	79	7	region	region	NOUN
ajb-31	79	8	used	use	VERB
ajb-31	79	9	here	here	ADV
ajb-31	79	10	was	be	AUX
ajb-31	79	11	the	the	DET
ajb-31	79	12	82kbp	82kbp	NOUN
ajb-31	79	13	isolated	isolate	VERB
ajb-31	79	14	and	and	CCONJ
ajb-31	79	15	embedded	embed	VERB
ajb-31	79	16	in	in	ADP
ajb-31	79	17	a	a	DET
ajb-31	79	18	bac	bac	NOUN
ajb-31	79	19	,	,	PUNCT
ajb-31	79	20	b73p06	b73p06	NOUN
ajb-31	79	21	,	,	PUNCT
ajb-31	79	22	which	which	PRON
ajb-31	79	23	encompassed	encompass	VERB
ajb-31	79	24	10	10	NUM
ajb-31	79	25	genes	gene	NOUN
ajb-31	79	26	and	and	CCONJ
ajb-31	79	27	one	one	NUM
ajb-31	79	28	highly	highly	ADV
ajb-31	79	29	polymorphic	polymorphic	ADJ
ajb-31	79	30	region	region	NOUN
ajb-31	79	31	of	of	ADP
ajb-31	79	32	about	about	ADV
ajb-31	79	33	59	59	NUM
ajb-31	79	34	kbp	kbp	NOUN
ajb-31	79	35	(	(	PUNCT
ajb-31	79	36	743	743	NUM
ajb-31	79	37	snps	snps	NOUN
ajb-31	79	38	from	from	ADP
ajb-31	79	39	1,500	1,500	NUM
ajb-31	79	40	bp	bp	NOUN
ajb-31	79	41	to	to	ADP
ajb-31	79	42	60,500	60,500	NUM
ajb-31	79	43	bp	bp	NOUN
ajb-31	79	44	)	)	PUNCT
ajb-31	79	45	.	.	PUNCT
ajb-31	80	1	a	a	DET
ajb-31	80	2	multiple	multiple	ADJ
ajb-31	80	3	sequence	sequence	NOUN
ajb-31	80	4	alignment	alignment	NOUN
ajb-31	80	5	between	between	ADP
ajb-31	80	6	rhg1	rhg1	PROPN
ajb-31	80	7	/	/	SYM
ajb-31	80	8	rfs2	rfs2	PROPN
ajb-31	80	9	locus	locus	NOUN
ajb-31	80	10	on	on	ADP
ajb-31	80	11	chromosome	chromosome	NOUN
ajb-31	80	12	18	18	NUM
ajb-31	80	13	,	,	PUNCT
ajb-31	80	14	of	of	ADP
ajb-31	80	15	three	three	NUM
ajb-31	80	16	sequences	sequence	NOUN
ajb-31	80	17	from	from	ADP
ajb-31	80	18	soybean	soybean	NOUN
ajb-31	80	19	cultivars	cultivar	NOUN
ajb-31	80	20	;	;	PUNCT
ajb-31	80	21	‘	'	PUNCT
ajb-31	80	22	forrest	forrest	NOUN
ajb-31	80	23	’	'	PUNCT
ajb-31	80	24	bac	bac	NOUN
ajb-31	80	25	b73p06	b73p06	VERB
ajb-31	80	26	(	(	PUNCT
ajb-31	80	27	hemmati	hemmati	NOUN
ajb-31	80	28	and	and	CCONJ
ajb-31	80	29	lightfoot	lightfoot	PROPN
ajb-31	80	30	,	,	PUNCT
ajb-31	80	31	2011	2011	NUM
ajb-31	80	32	)	)	PUNCT
ajb-31	80	33	,	,	PUNCT
ajb-31	80	34	asgrow	asgrow	NOUN
ajb-31	80	35	3244	3244	NUM
ajb-31	80	36	and	and	CCONJ
ajb-31	80	37	williams	williams	PROPN
ajb-31	80	38	82	82	NUM
ajb-31	80	39	(	(	PUNCT
ajb-31	80	40	srour	srour	VERB
ajb-31	80	41	et	et	PROPN
ajb-31	80	42	al	al	PROPN
ajb-31	80	43	.	.	PROPN
ajb-31	80	44	,	,	PUNCT
ajb-31	80	45	2012	2012	NUM
ajb-31	80	46	)	)	PUNCT
ajb-31	80	47	was	be	AUX
ajb-31	80	48	performed	perform	VERB
ajb-31	80	49	through	through	ADP
ajb-31	80	50	ncbi	ncbi	PROPN
ajb-31	80	51	-	-	PUNCT
ajb-31	80	52	msa	msa	PROPN
ajb-31	80	53	.	.	PUNCT
ajb-31	81	1	the	the	DET
ajb-31	81	2	out	out	ADV
ajb-31	81	3	-	-	PUNCT
ajb-31	81	4	put	put	NOUN
ajb-31	81	5	of	of	ADP
ajb-31	81	6	ncbi	ncbi	PROPN
ajb-31	81	7	-	-	PUNCT
ajb-31	81	8	msa	msa	PROPN
ajb-31	81	9	in	in	ADP
ajb-31	81	10	fasta	fasta	PROPN
ajb-31	81	11	format	format	NOUN
ajb-31	81	12	by	by	ADP
ajb-31	81	13	flat	flat	ADJ
ajb-31	81	14	query	query	NOUN
ajb-31	81	15	anchored	anchor	VERB
ajb-31	81	16	with	with	ADP
ajb-31	81	17	dots	dot	NOUN
ajb-31	81	18	for	for	ADP
ajb-31	81	19	identities	identity	NOUN
ajb-31	81	20	was	be	AUX
ajb-31	81	21	used	use	VERB
ajb-31	81	22	as	as	ADP
ajb-31	81	23	raw	raw	ADJ
ajb-31	81	24	data	datum	NOUN
ajb-31	81	25	.	.	PUNCT
ajb-31	82	1	exceltm	exceltm	PROPN
ajb-31	82	2	applications	application	NOUN
ajb-31	82	3	was	be	AUX
ajb-31	82	4	used	use	VERB
ajb-31	82	5	as	as	ADP
ajb-31	82	6	a	a	DET
ajb-31	82	7	sufficient	sufficient	ADJ
ajb-31	82	8	interface	interface	NOUN
ajb-31	82	9	to	to	PART
ajb-31	82	10	communicate	communicate	VERB
ajb-31	82	11	data	data	PROPN
ajb-31	82	12	,	,	PUNCT
ajb-31	82	13	snps	snps	PROPN
ajb-31	82	14	,	,	PUNCT
ajb-31	82	15	and	and	CCONJ
ajb-31	83	1	snps	snps	NOUN
ajb-31	83	2	-	-	NOUN
ajb-31	83	3	detection	detection	NOUN
ajb-31	83	4	.	.	PUNCT
ajb-31	84	1	snp	snp	ADJ
ajb-31	84	2	-	-	PUNCT
ajb-31	84	3	e	e	NOUN
ajb-31	84	4	design	design	NOUN
ajb-31	84	5	phases	phase	NOUN
ajb-31	84	6	designing	design	VERB
ajb-31	84	7	snp	snp	PROPN
ajb-31	84	8	-	-	PUNCT
ajb-31	84	9	e	e	NOUN
ajb-31	84	10	consisted	consist	VERB
ajb-31	84	11	of	of	ADP
ajb-31	84	12	3	3	NUM
ajb-31	84	13	major	major	ADJ
ajb-31	84	14	phases	phase	NOUN
ajb-31	84	15	.	.	PUNCT
ajb-31	85	1	first	first	ADJ
ajb-31	85	2	phase	phase	NOUN
ajb-31	85	3	was	be	AUX
ajb-31	85	4	data	data	NOUN
ajb-31	85	5	migration	migration	NOUN
ajb-31	85	6	of	of	ADP
ajb-31	85	7	msa	msa	PROPN
ajb-31	85	8	-	-	PUNCT
ajb-31	85	9	fasta	fasta	ADJ
ajb-31	85	10	-	-	PUNCT
ajb-31	85	11	format	format	NOUN
ajb-31	85	12	to	to	ADP
ajb-31	85	13	column	column	NOUN
ajb-31	85	14	-	-	PUNCT
ajb-31	85	15	alignmentformat	alignmentformat	NOUN
ajb-31	85	16	(	(	PUNCT
ajb-31	85	17	caf	caf	NOUN
ajb-31	85	18	)	)	PUNCT
ajb-31	85	19	,	,	PUNCT
ajb-31	85	20	second	second	ADJ
ajb-31	85	21	phase	phase	NOUN
ajb-31	85	22	was	be	AUX
ajb-31	85	23	data	data	NOUN
ajb-31	85	24	conversion	conversion	NOUN
ajb-31	85	25	of	of	ADP
ajb-31	85	26	columnalignment	columnalignment	NOUN
ajb-31	85	27	-	-	PUNCT
ajb-31	85	28	format	format	NOUN
ajb-31	85	29	(	(	PUNCT
ajb-31	85	30	caf	caf	NOUN
ajb-31	85	31	)	)	PUNCT
ajb-31	85	32	to	to	ADP
ajb-31	85	33	vertical	vertical	ADJ
ajb-31	85	34	-	-	PUNCT
ajb-31	85	35	alignment	alignment	NOUN
ajb-31	85	36	-	-	PUNCT
ajb-31	85	37	format	format	NOUN
ajb-31	85	38	(	(	PUNCT
ajb-31	85	39	vaf	vaf	NOUN
ajb-31	85	40	)	)	PUNCT
ajb-31	85	41	and	and	CCONJ
ajb-31	85	42	the	the	DET
ajb-31	85	43	third	third	ADJ
ajb-31	85	44	phase	phase	NOUN
ajb-31	85	45	was	be	AUX
ajb-31	85	46	single	single	ADJ
ajb-31	85	47	nucleotide	nucleotide	ADJ
ajb-31	85	48	polymorphism	polymorphism	NOUN
ajb-31	85	49	evaluation	evaluation	NOUN
ajb-31	85	50	,	,	PUNCT
ajb-31	85	51	snp	snp	PROPN
ajb-31	85	52	-	-	PROPN
ajb-31	85	53	e.	e.	PROPN
ajb-31	85	54	data	data	PROPN
ajb-31	85	55	migration	migration	NOUN
ajb-31	85	56	of	of	ADP
ajb-31	85	57	msa	msa	PROPN
ajb-31	85	58	-	-	PUNCT
ajb-31	85	59	fasta	fasta	ADJ
ajb-31	85	60	-	-	PUNCT
ajb-31	85	61	format	format	NOUN
ajb-31	85	62	to	to	ADP
ajb-31	85	63	column	column	NOUN
ajb-31	85	64	alignment	alignment	NOUN
ajb-31	85	65	format	format	NOUN
ajb-31	85	66	(	(	PUNCT
ajb-31	85	67	caf	caf	NOUN
ajb-31	85	68	)	)	PUNCT
ajb-31	85	69	to	to	PART
ajb-31	85	70	convert	convert	VERB
ajb-31	85	71	this	this	DET
ajb-31	85	72	raw	raw	ADJ
ajb-31	85	73	data	datum	NOUN
ajb-31	85	74	to	to	PART
ajb-31	85	75	excel	excel	VERB
ajb-31	85	76	applicable	applicable	ADJ
ajb-31	85	77	format	format	NOUN
ajb-31	85	78	,	,	PUNCT
ajb-31	85	79	data	datum	NOUN
ajb-31	85	80	migration	migration	NOUN
ajb-31	85	81	of	of	ADP
ajb-31	85	82	fasta	fasta	PROPN
ajb-31	85	83	format	format	NOUN
ajb-31	85	84	sequence	sequence	NOUN
ajb-31	85	85	of	of	ADP
ajb-31	85	86	multiple	multiple	ADJ
ajb-31	85	87	sequence	sequence	NOUN
ajb-31	85	88	alignments	alignment	NOUN
ajb-31	85	89	from	from	ADP
ajb-31	85	90	a	a	DET
ajb-31	85	91	horizontal	horizontal	ADJ
ajb-31	85	92	alignment	alignment	NOUN
ajb-31	85	93	text	text	NOUN
ajb-31	85	94	format	format	NOUN
ajb-31	85	95	to	to	PART
ajb-31	85	96	excel	excel	VERB
ajb-31	85	97	vertical	vertical	ADJ
ajb-31	85	98	alignment	alignment	NOUN
ajb-31	85	99	format	format	NOUN
ajb-31	85	100	was	be	AUX
ajb-31	85	101	needed	need	VERB
ajb-31	85	102	.	.	PUNCT
ajb-31	86	1	a	a	DET
ajb-31	86	2	cascade	cascade	NOUN
ajb-31	86	3	conversion	conversion	NOUN
ajb-31	86	4	process	process	NOUN
ajb-31	86	5	was	be	AUX
ajb-31	86	6	applied	apply	VERB
ajb-31	86	7	to	to	PART
ajb-31	86	8	convert	convert	VERB
ajb-31	86	9	entire	entire	ADJ
ajb-31	86	10	msa	msa	PROPN
ajb-31	86	11	-	-	PUNCT
ajb-31	86	12	fasta	fasta	PROPN
ajb-31	86	13	text	text	NOUN
ajb-31	86	14	format	format	NOUN
ajb-31	86	15	to	to	PART
ajb-31	86	16	excel	excel	VERB
ajb-31	86	17	format	format	NOUN
ajb-31	86	18	,	,	PUNCT
ajb-31	86	19	column	column	NOUN
ajb-31	86	20	.	.	PUNCT
ajb-31	87	1	text	text	NOUN
ajb-31	87	2	to	to	ADP
ajb-31	87	3	column	column	NOUN
ajb-31	87	4	function	function	NOUN
ajb-31	87	5	was	be	AUX
ajb-31	87	6	applied	apply	VERB
ajb-31	87	7	to	to	PART
ajb-31	87	8	entire	entire	VERB
ajb-31	87	9	msa	msa	PROPN
ajb-31	87	10	-	-	PUNCT
ajb-31	87	11	fasta	fasta	PROPN
ajb-31	87	12	.	.	PUNCT
ajb-31	88	1	up	up	ADP
ajb-31	88	2	to	to	ADP
ajb-31	88	3	this	this	DET
ajb-31	88	4	stage	stage	NOUN
ajb-31	88	5	a	a	DET
ajb-31	88	6	3×4	3×4	NUM
ajb-31	88	7	of	of	ADP
ajb-31	88	8	msa	msa	PROPN
ajb-31	88	9	-	-	PUNCT
ajb-31	88	10	excel	excel	NOUN
ajb-31	88	11	format	format	NOUN
ajb-31	88	12	had	have	AUX
ajb-31	88	13	been	be	AUX
ajb-31	88	14	created	create	VERB
ajb-31	88	15	.	.	PUNCT
ajb-31	89	1	each	each	DET
ajb-31	89	2	ncbi	ncbi	PROPN
ajb-31	89	3	-	-	PUNCT
ajb-31	89	4	msa	msa	PROPN
ajb-31	89	5	-	-	PUNCT
ajb-31	89	6	fasta	fasta	PROPN
ajb-31	89	7	converted	convert	VERB
ajb-31	89	8	to	to	ADP
ajb-31	89	9	msa	msa	PROPN
ajb-31	89	10	-	-	PUNCT
ajb-31	89	11	excel	excel	NOUN
ajb-31	89	12	format	format	NOUN
ajb-31	89	13	consisted	consist	VERB
ajb-31	89	14	of	of	ADP
ajb-31	89	15	column	column	NOUN
ajb-31	89	16	a	a	DET
ajb-31	89	17	indicating	indicate	VERB
ajb-31	89	18	sequence	sequence	NOUN
ajb-31	89	19	i	i	PROPN
ajb-31	89	20	d	d	PROPN
ajb-31	89	21	,	,	PUNCT
ajb-31	89	22	column	column	NOUN
ajb-31	89	23	b	b	PROPN
ajb-31	89	24	indicating	indicate	VERB
ajb-31	89	25	sequence	sequence	NOUN
ajb-31	89	26	starting	start	VERB
ajb-31	89	27	numbers	number	NOUN
ajb-31	89	28	,	,	PUNCT
ajb-31	89	29	column	column	NOUN
ajb-31	89	30	c	c	NOUN
ajb-31	89	31	containing	contain	VERB
ajb-31	89	32	60	60	NUM
ajb-31	89	33	nucleotides	nucleotide	NOUN
ajb-31	89	34	of	of	ADP
ajb-31	89	35	each	each	DET
ajb-31	89	36	sequence	sequence	NOUN
ajb-31	89	37	from	from	ADP
ajb-31	89	38	each	each	DET
ajb-31	89	39	row	row	NOUN
ajb-31	89	40	with	with	ADP
ajb-31	89	41	no	no	DET
ajb-31	89	42	assigned	assign	VERB
ajb-31	89	43	identification	identification	NOUN
ajb-31	89	44	number	number	NOUN
ajb-31	89	45	to	to	ADP
ajb-31	89	46	each	each	DET
ajb-31	89	47	nucleotide	nucleotide	NOUN
ajb-31	89	48	and	and	CCONJ
ajb-31	89	49	finally	finally	ADV
ajb-31	89	50	,	,	PUNCT
ajb-31	89	51	column	column	NOUN
ajb-31	89	52	d	d	NOUN
ajb-31	89	53	indicating	indicate	VERB
ajb-31	89	54	sequence	sequence	NOUN
ajb-31	89	55	ending	end	VERB
ajb-31	89	56	numbers	number	NOUN
ajb-31	89	57	(	(	PUNCT
ajb-31	89	58	figure	figure	NOUN
ajb-31	89	59	1	1	NUM
ajb-31	89	60	)	)	PUNCT
ajb-31	89	61	.	.	PUNCT
ajb-31	90	1	data	datum	NOUN
ajb-31	90	2	conversion	conversion	NOUN
ajb-31	90	3	of	of	ADP
ajb-31	90	4	column	column	NOUN
ajb-31	90	5	alignment	alignment	NOUN
ajb-31	90	6	format	format	NOUN
ajb-31	90	7	(	(	PUNCT
ajb-31	90	8	caf	caf	NOUN
ajb-31	90	9	)	)	PUNCT
ajb-31	90	10	to	to	ADP
ajb-31	90	11	vertical	vertical	ADJ
ajb-31	90	12	alignment	alignment	NOUN
ajb-31	90	13	format	format	NOUN
ajb-31	90	14	(	(	PUNCT
ajb-31	90	15	vaf	vaf	PROPN
ajb-31	90	16	)	)	PUNCT
ajb-31	90	17	the	the	DET
ajb-31	90	18	greatest	great	ADJ
ajb-31	90	19	challenge	challenge	NOUN
ajb-31	90	20	at	at	ADP
ajb-31	90	21	this	this	DET
ajb-31	90	22	stage	stage	NOUN
ajb-31	90	23	was	be	AUX
ajb-31	90	24	extraction	extraction	NOUN
ajb-31	90	25	of	of	ADP
ajb-31	90	26	each	each	DET
ajb-31	90	27	sequence	sequence	NOUN
ajb-31	90	28	form	form	VERB
ajb-31	90	29	the	the	DET
ajb-31	90	30	multiple	multiple	ADJ
ajb-31	90	31	sequence	sequence	NOUN
ajb-31	90	32	alignments	alignment	NOUN
ajb-31	90	33	while	while	SCONJ
ajb-31	90	34	conserving	conserve	VERB
ajb-31	90	35	alignments	alignment	NOUN
ajb-31	90	36	in	in	ADP
ajb-31	90	37	excel	excel	NOUN
ajb-31	90	38	format	format	NOUN
ajb-31	90	39	,	,	PUNCT
ajb-31	90	40	vaf	vaf	NOUN
ajb-31	90	41	.	.	PUNCT
ajb-31	91	1	in	in	ADP
ajb-31	91	2	order	order	NOUN
ajb-31	91	3	to	to	PART
ajb-31	91	4	overcome	overcome	VERB
ajb-31	91	5	this	this	DET
ajb-31	91	6	challenge	challenge	NOUN
ajb-31	91	7	,	,	PUNCT
ajb-31	91	8	data	datum	NOUN
ajb-31	91	9	filtering	filtering	NOUN
ajb-31	91	10	was	be	AUX
ajb-31	91	11	applied	apply	VERB
ajb-31	91	12	to	to	PART
ajb-31	91	13	call	call	VERB
ajb-31	91	14	for	for	ADP
ajb-31	91	15	alreadyaligned	alreadyaligne	VERB
ajb-31	91	16	-	-	PUNCT
ajb-31	91	17	sequences	sequence	NOUN
ajb-31	91	18	;	;	PUNCT
ajb-31	91	19	forrest	forr	ADJ
ajb-31	91	20	,	,	PUNCT
ajb-31	91	21	asgrow	asgrow	NOUN
ajb-31	91	22	and	and	CCONJ
ajb-31	91	23	williams	williams	PROPN
ajb-31	91	24	82	82	PROPN
ajb-31	91	25	(	(	PUNCT
ajb-31	91	26	w82	w82	PROPN
ajb-31	91	27	)	)	PUNCT
ajb-31	91	28	by	by	ADP
ajb-31	91	29	calling	call	VERB
ajb-31	91	30	their	their	PRON
ajb-31	91	31	sequence	sequence	NOUN
ajb-31	91	32	i	i	PROPN
ajb-31	91	33	d	d	PROPN
ajb-31	91	34	,	,	PUNCT
ajb-31	91	35	query	query	NOUN
ajb-31	91	36	(	(	PUNCT
ajb-31	91	37	forrest	forrest	PROPN
ajb-31	91	38	)	)	PUNCT
ajb-31	91	39	,	,	PUNCT
ajb-31	91	40	31218	31218	NUM
ajb-31	91	41	(	(	PUNCT
ajb-31	91	42	asgrow	asgrow	PROPN
ajb-31	91	43	3244	3244	NUM
ajb-31	91	44	)	)	PUNCT
ajb-31	91	45	and	and	CCONJ
ajb-31	91	46	31219	31219	NUM
ajb-31	91	47	(	(	PUNCT
ajb-31	91	48	w82	w82	NOUN
ajb-31	91	49	)	)	PUNCT
ajb-31	91	50	accordingly	accordingly	ADV
ajb-31	91	51	.	.	PUNCT
ajb-31	92	1	the	the	DET
ajb-31	92	2	purpose	purpose	NOUN
ajb-31	92	3	of	of	ADP
ajb-31	92	4	filtering	filtering	NOUN
ajb-31	92	5	was	be	AUX
ajb-31	92	6	to	to	PART
ajb-31	92	7	isolate	isolate	VERB
ajb-31	92	8	each	each	DET
ajb-31	92	9	sequence	sequence	NOUN
ajb-31	92	10	from	from	ADP
ajb-31	92	11	the	the	DET
ajb-31	92	12	fasta	fasta	PROPN
ajb-31	92	13	format	format	NOUN
ajb-31	92	14	alignment	alignment	NOUN
ajb-31	92	15	.	.	PUNCT
ajb-31	93	1	then	then	ADV
ajb-31	93	2	,	,	PUNCT
ajb-31	93	3	each	each	DET
ajb-31	93	4	isolated	isolated	ADJ
ajb-31	93	5	sequence	sequence	NOUN
ajb-31	93	6	(	(	PUNCT
ajb-31	93	7	asgrow	asgrow	NOUN
ajb-31	93	8	3244	3244	NUM
ajb-31	93	9	,	,	PUNCT
ajb-31	93	10	w82	w82	NOUN
ajb-31	93	11	and	and	CCONJ
ajb-31	93	12	forrest	forrest	PROPN
ajb-31	93	13	)	)	PUNCT
ajb-31	93	14	was	be	AUX
ajb-31	93	15	transferred	transfer	VERB
ajb-31	93	16	to	to	ADP
ajb-31	93	17	emeditor	emeditor	NOUN
ajb-31	93	18	to	to	PART
ajb-31	93	19	be	be	AUX
ajb-31	93	20	converted	convert	VERB
ajb-31	93	21	to	to	ADP
ajb-31	93	22	a	a	DET
ajb-31	93	23	single	single	ADJ
ajb-31	93	24	vertical	vertical	ADJ
ajb-31	93	25	sequence	sequence	NOUN
ajb-31	93	26	in	in	ADP
ajb-31	93	27	a	a	DET
ajb-31	93	28	column	column	NOUN
ajb-31	93	29	by	by	ADP
ajb-31	93	30	applying	apply	VERB
ajb-31	93	31	a	a	DET
ajb-31	93	32	separation	separation	NOUN
ajb-31	93	33	method	method	NOUN
ajb-31	93	34	such	such	ADJ
ajb-31	93	35	as	as	ADP
ajb-31	93	36	line	line	NOUN
ajb-31	93	37	break	break	NOUN
ajb-31	93	38	or	or	CCONJ
ajb-31	93	39	end	end	NOUN
ajb-31	93	40	-	-	PUNCT
ajb-31	93	41	of	of	ADP
ajb-31	93	42	-	-	PUNCT
ajb-31	93	43	line	line	NOUN
ajb-31	93	44	(	(	PUNCT
ajb-31	93	45	eol	eol	PROPN
ajb-31	93	46	)	)	PUNCT
ajb-31	93	47	.	.	PUNCT
ajb-31	94	1	next	next	ADV
ajb-31	94	2	,	,	PUNCT
ajb-31	94	3	each	each	DET
ajb-31	94	4	vertical	vertical	ADJ
ajb-31	94	5	isolated	isolated	ADJ
ajb-31	94	6	sequence	sequence	NOUN
ajb-31	94	7	(	(	PUNCT
ajb-31	94	8	vis	vis	X
ajb-31	94	9	)	)	PUNCT
ajb-31	94	10	was	be	AUX
ajb-31	94	11	imported	import	VERB
ajb-31	94	12	from	from	ADP
ajb-31	94	13	emeditor	emeditor	NOUN
ajb-31	94	14	to	to	PART
ajb-31	94	15	excel	excel	VERB
ajb-31	94	16	in	in	ADP
ajb-31	94	17	a	a	DET
ajb-31	94	18	single	single	ADJ
ajb-31	94	19	column	column	NOUN
ajb-31	94	20	.	.	PUNCT
ajb-31	95	1	and	and	CCONJ
ajb-31	95	2	the	the	DET
ajb-31	95	3	final	final	ADJ
ajb-31	95	4	outcome	outcome	NOUN
ajb-31	95	5	of	of	ADP
ajb-31	95	6	this	this	DET
ajb-31	95	7	process	process	NOUN
ajb-31	95	8	was	be	AUX
ajb-31	95	9	a	a	DET
ajb-31	95	10	vertical	vertical	ADJ
ajb-31	95	11	alignment	alignment	NOUN
ajb-31	95	12	format	format	NOUN
ajb-31	95	13	(	(	PUNCT
ajb-31	95	14	vaf	vaf	NOUN
ajb-31	95	15	)	)	PUNCT
ajb-31	95	16	.	.	PUNCT
ajb-31	96	1	sequence	sequence	NOUN
ajb-31	96	2	numbering	numbering	NOUN
ajb-31	96	3	method	method	NOUN
ajb-31	96	4	(	(	PUNCT
ajb-31	96	5	snm	snm	PROPN
ajb-31	96	6	)	)	PUNCT
ajb-31	96	7	and	and	CCONJ
ajb-31	96	8	challenges	challenge	VERB
ajb-31	96	9	the	the	DET
ajb-31	96	10	purpose	purpose	NOUN
ajb-31	96	11	of	of	ADP
ajb-31	96	12	this	this	DET
ajb-31	96	13	step	step	NOUN
ajb-31	96	14	was	be	AUX
ajb-31	96	15	to	to	PART
ajb-31	96	16	assign	assign	VERB
ajb-31	96	17	an	an	DET
ajb-31	96	18	ascending	ascend	VERB
ajb-31	96	19	number	number	NOUN
ajb-31	96	20	(	(	PUNCT
ajb-31	96	21	i	i	NOUN
ajb-31	96	22	d	d	PROPN
ajb-31	96	23	)	)	PUNCT
ajb-31	96	24	to	to	ADP
ajb-31	96	25	each	each	DET
ajb-31	96	26	nucleotide	nucleotide	NOUN
ajb-31	96	27	from	from	ADP
ajb-31	96	28	each	each	DET
ajb-31	96	29	sequence	sequence	NOUN
ajb-31	96	30	located	locate	VERB
ajb-31	96	31	at	at	ADP
ajb-31	96	32	separate	separate	ADJ
ajb-31	96	33	columns	column	NOUN
ajb-31	96	34	in	in	ADP
ajb-31	96	35	excel	excel	NOUN
ajb-31	96	36	.	.	PUNCT
ajb-31	97	1	gaps	gap	NOUN
ajb-31	97	2	were	be	AUX
ajb-31	97	3	regions	region	NOUN
ajb-31	97	4	where	where	SCONJ
ajb-31	97	5	the	the	DET
ajb-31	97	6	greatest	great	ADJ
ajb-31	97	7	challenge	challenge	NOUN
ajb-31	97	8	in	in	ADP
ajb-31	97	9	snm	snm	PROPN
ajb-31	97	10	occurred	occur	VERB
ajb-31	97	11	.	.	PUNCT
ajb-31	98	1	to	to	PART
ajb-31	98	2	synchronize	synchronize	VERB
ajb-31	98	3	snm	snm	PROPN
ajb-31	98	4	with	with	ADP
ajb-31	98	5	sequence	sequence	NOUN
ajb-31	98	6	alignment	alignment	NOUN
ajb-31	98	7	gaps	gap	NOUN
ajb-31	98	8	sag	sag	NOUN
ajb-31	98	9	,	,	PUNCT
ajb-31	98	10	a	a	DET
ajb-31	98	11	combination	combination	NOUN
ajb-31	98	12	of	of	ADP
ajb-31	98	13	logic	logic	NOUN
ajb-31	98	14	functions	function	NOUN
ajb-31	98	15	i.e.	i.e.	X
ajb-31	98	16	“	"	PUNCT
ajb-31	98	17	if	if	SCONJ
ajb-31	98	18	”	"	PUNCT
ajb-31	98	19	,	,	PUNCT
ajb-31	98	20	were	be	AUX
ajb-31	98	21	applied	apply	VERB
ajb-31	98	22	,	,	PUNCT
ajb-31	98	23	in	in	ADP
ajb-31	98	24	order	order	NOUN
ajb-31	98	25	to	to	PART
ajb-31	98	26	stop	stop	VERB
ajb-31	98	27	counting	count	VERB
ajb-31	98	28	nucleotide	nucleotide	ADJ
ajb-31	98	29	numbering	numbering	NOUN
ajb-31	98	30	at	at	ADP
ajb-31	98	31	gap	gap	NOUN
ajb-31	98	32	regions	region	NOUN
ajb-31	98	33	and	and	CCONJ
ajb-31	98	34	release	release	NOUN
ajb-31	98	35	counting	counting	NOUN
ajb-31	98	36	at	at	ADP
ajb-31	98	37	nucleotides	nucleotide	NOUN
ajb-31	98	38	regions	region	NOUN
ajb-31	98	39	.	.	PUNCT
ajb-31	99	1	single	single	ADJ
ajb-31	99	2	nucleotide	nucleotide	ADJ
ajb-31	99	3	polymorphism	polymorphism	NOUN
ajb-31	99	4	evaluation	evaluation	NOUN
ajb-31	99	5	,	,	PUNCT
ajb-31	99	6	snp	snp	PROPN
ajb-31	99	7	-	-	PUNCT
ajb-31	99	8	e	e	NOUN
ajb-31	99	9	in	in	ADP
ajb-31	99	10	order	order	NOUN
ajb-31	99	11	to	to	PART
ajb-31	99	12	identify	identify	VERB
ajb-31	99	13	snps	snps	PROPN
ajb-31	99	14	among	among	ADP
ajb-31	99	15	aligned	aligned	ADJ
ajb-31	99	16	sequences	sequence	NOUN
ajb-31	99	17	,	,	PUNCT
ajb-31	99	18	a	a	DET
ajb-31	99	19	combination	combination	NOUN
ajb-31	99	20	of	of	ADP
ajb-31	99	21	logic	logic	NOUN
ajb-31	99	22	functions	function	NOUN
ajb-31	99	23	i.e.	i.e.	X
ajb-31	99	24	“	"	PUNCT
ajb-31	99	25	if	if	SCONJ
ajb-31	99	26	”	"	PUNCT
ajb-31	99	27	and	and	CCONJ
ajb-31	99	28	“	"	PUNCT
ajb-31	99	29	or	or	CCONJ
ajb-31	99	30	”	"	PUNCT
ajb-31	99	31	were	be	AUX
ajb-31	99	32	applied	apply	VERB
ajb-31	99	33	.	.	PUNCT
ajb-31	100	1	all	all	DET
ajb-31	100	2	snps	snps	PROPN
ajb-31	100	3	were	be	AUX
ajb-31	100	4	flagged	flag	VERB
ajb-31	100	5	in	in	ADP
ajb-31	100	6	a	a	DET
ajb-31	100	7	separate	separate	ADJ
ajb-31	100	8	column	column	NOUN
ajb-31	100	9	as	as	ADP
ajb-31	100	10	the	the	DET
ajb-31	100	11	result	result	NOUN
ajb-31	100	12	of	of	ADP
ajb-31	100	13	logic	logic	NOUN
ajb-31	100	14	function	function	NOUN
ajb-31	100	15	,	,	PUNCT
ajb-31	100	16	“	"	PUNCT
ajb-31	100	17	0	0	NUM
ajb-31	100	18	”	"	PUNCT
ajb-31	100	19	for	for	ADP
ajb-31	100	20	“	"	PUNCT
ajb-31	100	21	false	false	ADJ
ajb-31	100	22	”	"	PUNCT
ajb-31	100	23	and	and	CCONJ
ajb-31	100	24	“	"	PUNCT
ajb-31	100	25	1	1	NUM
ajb-31	100	26	”	"	PUNCT
ajb-31	100	27	for	for	ADP
ajb-31	100	28	“	"	PUNCT
ajb-31	100	29	true	true	ADJ
ajb-31	100	30	”	"	PUNCT
ajb-31	100	31	.	.	PUNCT
ajb-31	101	1	filtering	filter	VERB
ajb-31	101	2	on	on	ADP
ajb-31	101	3	trues	true	NOUN
ajb-31	101	4	revealed	reveal	VERB
ajb-31	101	5	snps	snps	PROPN
ajb-31	101	6	for	for	ADP
ajb-31	101	7	further	further	ADJ
ajb-31	101	8	analysis	analysis	NOUN
ajb-31	101	9	.	.	PUNCT
ajb-31	102	1	the	the	DET
ajb-31	102	2	algorithm	algorithm	PROPN
ajb-31	102	3	flowchart	flowchart	NOUN
ajb-31	102	4	of	of	ADP
ajb-31	102	5	snp	snp	PROPN
ajb-31	102	6	-	-	PUNCT
ajb-31	102	7	e	e	PROPN
ajb-31	102	8	was	be	AUX
ajb-31	102	9	pictured	picture	VERB
ajb-31	102	10	in	in	ADP
ajb-31	102	11	figure	figure	NOUN
ajb-31	102	12	2	2	NUM
ajb-31	102	13	.	.	PUNCT
ajb-31	103	1	the	the	DET
ajb-31	103	2	step	step	NOUN
ajb-31	103	3	by	by	ADP
ajb-31	103	4	step	step	NOUN
ajb-31	103	5	guideline	guideline	NOUN
ajb-31	103	6	is	be	AUX
ajb-31	103	7	also	also	ADV
ajb-31	103	8	accessible	accessible	ADJ
ajb-31	103	9	through	through	ADP
ajb-31	103	10	http://pbgc.siu.edu/docs/illustration	http://pbgc.siu.edu/docs/illustration	NOUN
ajb-31	103	11	.	.	PUNCT
ajb-31	104	1	docx	docx	PROPN
ajb-31	104	2	link	link	PROPN
ajb-31	104	3	.	.	PUNCT
ajb-31	105	1	integration	integration	NOUN
ajb-31	105	2	of	of	ADP
ajb-31	105	3	31	31	NUM
ajb-31	105	4	genomes	genome	NOUN
ajb-31	105	5	snps	snps	PROPN
ajb-31	105	6	the	the	DET
ajb-31	105	7	available	available	ADJ
ajb-31	105	8	snp	snp	ADJ
ajb-31	105	9	motifs	motif	NOUN
ajb-31	105	10	of	of	ADP
ajb-31	105	11	31	31	NUM
ajb-31	105	12	genomes	genome	NOUN
ajb-31	105	13	by	by	ADP
ajb-31	105	14	lam	lam	PROPN
ajb-31	105	15	et	et	PROPN
ajb-31	105	16	al	al	PROPN
ajb-31	105	17	.	.	PROPN
ajb-31	106	1	(	(	PUNCT
ajb-31	106	2	2010	2010	NUM
ajb-31	106	3	)	)	PUNCT
ajb-31	106	4	which	which	PRON
ajb-31	106	5	identified	identify	VERB
ajb-31	106	6	over	over	ADP
ajb-31	106	7	400	400	NUM
ajb-31	106	8	more	more	ADJ
ajb-31	106	9	potential	potential	ADJ
ajb-31	106	10	snp	snp	ADJ
ajb-31	106	11	positions	position	NOUN
ajb-31	106	12	in	in	ADP
ajb-31	106	13	this	this	DET
ajb-31	106	14	region	region	NOUN
ajb-31	106	15	(	(	PUNCT
ajb-31	106	16	lam	lam	PROPN
ajb-31	106	17	et	et	PROPN
ajb-31	106	18	al	al	PROPN
ajb-31	106	19	.	.	PROPN
ajb-31	106	20	,	,	PUNCT
ajb-31	106	21	2010	2010	NUM
ajb-31	106	22	)	)	PUNCT
ajb-31	106	23	was	be	AUX
ajb-31	106	24	compared	compare	VERB
ajb-31	106	25	to	to	ADP
ajb-31	106	26	the	the	DET
ajb-31	106	27	results	result	NOUN
ajb-31	106	28	of	of	ADP
ajb-31	106	29	snp	snp	NOUN
ajb-31	106	30	-	-	PUNCT
ajb-31	106	31	e	e	NOUN
ajb-31	106	32	from	from	ADP
ajb-31	106	33	three	three	NUM
ajb-31	106	34	analyzed	analyze	VERB
ajb-31	106	35	sequences	sequence	NOUN
ajb-31	106	36	mentioned	mention	VERB
ajb-31	106	37	above	above	ADV
ajb-31	106	38	(	(	PUNCT
ajb-31	106	39	master	master	NOUN
ajb-31	106	40	-	-	PUNCT
ajb-31	106	41	snps	snps	PROPN
ajb-31	106	42	)	)	PUNCT
ajb-31	106	43	.	.	PUNCT
ajb-31	107	1	the	the	DET
ajb-31	107	2	comparison	comparison	NOUN
ajb-31	107	3	demonstrated	demonstrate	VERB
ajb-31	107	4	that	that	SCONJ
ajb-31	107	5	the	the	DET
ajb-31	107	6	snp	snp	ADJ
ajb-31	107	7	motif	motif	NOUN
ajb-31	107	8	s	s	VERB
ajb-31	107	9	could	could	AUX
ajb-31	107	10	be	be	AUX
ajb-31	107	11	added	add	VERB
ajb-31	107	12	by	by	ADP
ajb-31	107	13	reference	reference	NOUN
ajb-31	107	14	to	to	ADP
ajb-31	107	15	the	the	DET
ajb-31	107	16	bp	bp	PROPN
ajb-31	107	17	position	position	NOUN
ajb-31	107	18	of	of	ADP
ajb-31	107	19	williams	williams	PROPN
ajb-31	107	20	82	82	NUM
ajb-31	107	21	.	.	PUNCT
ajb-31	108	1	for	for	ADP
ajb-31	108	2	those	those	DET
ajb-31	108	3	regions	region	NOUN
ajb-31	108	4	that	that	PRON
ajb-31	108	5	misalignments	misalignment	NOUN
ajb-31	108	6	had	have	AUX
ajb-31	108	7	occurred	occur	VERB
ajb-31	108	8	,	,	PUNCT
ajb-31	108	9	they	they	PRON
ajb-31	108	10	were	be	AUX
ajb-31	108	11	clear	clear	ADJ
ajb-31	108	12	from	from	ADP
ajb-31	108	13	the	the	DET
ajb-31	108	14	snp	snp	ADJ
ajb-31	108	15	motifs	motif	NOUN
ajb-31	108	16	disagreement	disagreement	NOUN
ajb-31	108	17	and	and	CCONJ
ajb-31	108	18	could	could	AUX
ajb-31	108	19	be	be	AUX
ajb-31	108	20	logically	logically	ADV
ajb-31	108	21	nudged	nudge	VERB
ajb-31	108	22	to	to	ADP
ajb-31	108	23	the	the	DET
ajb-31	108	24	nearest	near	ADJ
ajb-31	108	25	likely	likely	ADJ
ajb-31	108	26	correct	correct	ADJ
ajb-31	108	27	positions	position	NOUN
ajb-31	108	28	.	.	PUNCT
ajb-31	109	1	once	once	ADV
ajb-31	109	2	aligned	align	VERB
ajb-31	109	3	the	the	DET
ajb-31	109	4	snps	snps	PROPN
ajb-31	109	5	were	be	AUX
ajb-31	109	6	de	de	ADJ
ajb-31	109	7	-	-	ADJ
ajb-31	109	8	convoluted	convoluted	ADJ
ajb-31	109	9	to	to	ADP
ajb-31	109	10	single	single	ADJ
ajb-31	109	11	columns	column	NOUN
ajb-31	109	12	each	each	PRON
ajb-31	109	13	corresponding	correspond	VERB
ajb-31	109	14	to	to	ADP
ajb-31	109	15	a	a	DET
ajb-31	109	16	single	single	ADJ
ajb-31	109	17	genotype	genotype	NOUN
ajb-31	109	18	(	(	PUNCT
ajb-31	109	19	hauge	hauge	PROPN
ajb-31	109	20	et	et	PROPN
ajb-31	109	21	al	al	PROPN
ajb-31	109	22	.	.	PROPN
ajb-31	109	23	,	,	PUNCT
ajb-31	109	24	2006	2006	NUM
ajb-31	109	25	;	;	PUNCT
ajb-31	109	26	lam	lam	PROPN
ajb-31	109	27	et	et	PROPN
ajb-31	109	28	al	al	PROPN
ajb-31	109	29	.	.	PROPN
ajb-31	109	30	,	,	PUNCT
ajb-31	109	31	2010	2010	NUM
ajb-31	109	32	)	)	PUNCT
ajb-31	109	33	.	.	PUNCT
ajb-31	110	1	a	a	DET
ajb-31	110	2	tla	tla	NOUN
ajb-31	110	3	s	s	VERB
ajb-31	110	4	jo	jo	NOUN
ajb-31	110	5	ur	ur	INTJ
ajb-31	110	6	na	na	NOUN
ajb-31	111	1	l	l	NOUN
ajb-31	111	2	o	o	X
ajb-31	112	1	f	f	X
ajb-31	112	2	bi	bi	NOUN
ajb-31	112	3	ol	ol	PROPN
ajb-31	112	4	og	og	PROPN
ajb-31	112	5	y	y	PROPN
ajb-31	112	6	is	be	AUX
ajb-31	112	7	sn	sn	PROPN
ajb-31	112	8	2	2	NUM
ajb-31	112	9	15	15	NUM
ajb-31	112	10	891	891	NUM
ajb-31	112	11	51	51	NUM
ajb-31	112	12	.	.	PUNCT
ajb-31	113	1	p	p	X
ajb-31	113	2	ub	ub	ADJ
ajb-31	113	3	lis	li	NOUN
ajb-31	113	4	he	he	PRON
ajb-31	113	5	d	d	NOUN
ajb-31	113	6	by	by	ADP
ajb-31	113	7	a	a	DET
ajb-31	113	8	tla	tla	NOUN
ajb-31	113	9	s	s	AUX
ajb-31	113	10	pu	pu	INTJ
ajb-31	113	11	bl	bl	PROPN
ajb-31	113	12	ish	ish	VERB
ajb-31	113	13	in	in	ADP
ajb-31	113	14	g	g	PROPN
ajb-31	113	15	,	,	PUNCT
ajb-31	114	1	l	l	NOUN
ajb-31	114	2	p	p	X
ajb-31	115	1	(	(	PUNCT
ajb-31	115	2	w	w	PROPN
ajb-31	115	3	w	w	PROPN
ajb-31	115	4	w	w	PROPN
ajb-31	115	5	.a	.a	PROPN
ajb-31	115	6	tla	tla	AUX
ajb-31	115	7	spu	spu	PROPN
ajb-31	115	8	bl	bl	PROPN
ajb-31	115	9	ish	ish	VERB
ajb-31	115	10	in	in	ADP
ajb-31	115	11	g.	g.	PROPN
ajb-31	115	12	or	or	CCONJ
ajb-31	115	13	g	g	NOUN
ajb-31	115	14	)	)	PUNCT
ajb-31	116	1	a	a	DET
ajb-31	116	2	tla	tla	NOUN
ajb-31	116	3	s	s	VERB
ajb-31	116	4	jo	jo	NOUN
ajb-31	116	5	ur	ur	INTJ
ajb-31	116	6	na	na	NOUN
ajb-31	116	7	l	l	NOUN
ajb-31	117	1	o	o	X
ajb-31	117	2	f	f	X
ajb-31	117	3	bi	bi	NOUN
ajb-31	117	4	ol	ol	PROPN
ajb-31	117	5	og	og	PROPN
ajb-31	117	6	y	y	PROPN
ajb-31	117	7	is	be	AUX
ajb-31	117	8	sn	sn	PROPN
ajb-31	117	9	2	2	NUM
ajb-31	117	10	15	15	NUM
ajb-31	117	11	891	891	NUM
ajb-31	117	12	51	51	NUM
ajb-31	117	13	.	.	PUNCT
ajb-31	118	1	p	p	X
ajb-31	118	2	ub	ub	ADJ
ajb-31	118	3	lis	li	NOUN
ajb-31	118	4	he	he	PRON
ajb-31	118	5	d	d	NOUN
ajb-31	118	6	by	by	ADP
ajb-31	118	7	a	a	DET
ajb-31	118	8	tla	tla	NOUN
ajb-31	118	9	s	s	AUX
ajb-31	118	10	pu	pu	INTJ
ajb-31	118	11	bl	bl	PROPN
ajb-31	118	12	ish	ish	VERB
ajb-31	118	13	in	in	ADP
ajb-31	118	14	g	g	PROPN
ajb-31	118	15	,	,	PUNCT
ajb-31	119	1	l	l	NOUN
ajb-31	119	2	p	p	X
ajb-31	120	1	(	(	PUNCT
ajb-31	120	2	w	w	PROPN
ajb-31	120	3	w	w	PROPN
ajb-31	120	4	w	w	PROPN
ajb-31	120	5	.a	.a	PROPN
ajb-31	120	6	tla	tla	AUX
ajb-31	120	7	spu	spu	PROPN
ajb-31	120	8	bl	bl	PROPN
ajb-31	120	9	ish	ish	VERB
ajb-31	120	10	in	in	ADP
ajb-31	120	11	g.	g.	PROPN
ajb-31	120	12	or	or	CCONJ
ajb-31	120	13	g	g	NOUN
ajb-31	120	14	)	)	PUNCT
ajb-31	120	15	208	208	NUM
ajb-31	120	16	fi	fi	NOUN
ajb-31	120	17	gu	gu	X
ajb-31	120	18	re	re	PROPN
ajb-31	120	19	1	1	NUM
ajb-31	120	20	.	.	PUNCT
ajb-31	121	1	t	t	NOUN
ajb-31	122	1	he	he	PRON
ajb-31	122	2	fi	fi	INTJ
ajb-31	123	1	rs	rs	INTJ
ajb-31	123	2	t	t	PROPN
ajb-31	123	3	s	s	PART
ajb-31	123	4	te	te	ADP
ajb-31	123	5	p	p	NOUN
ajb-31	123	6	of	of	ADP
ajb-31	123	7	c	c	PROPN
ajb-31	123	8	on	on	ADP
ajb-31	123	9	ve	ve	VERB
ajb-31	123	10	rt	rt	PROPN
ajb-31	123	11	in	in	ADP
ajb-31	123	12	g	g	PROPN
ajb-31	123	13	m	m	PROPN
ajb-31	123	14	sa	sa	PROPN
ajb-31	123	15	-f	-f	NUM
ajb-31	123	16	a	a	DET
ajb-31	123	17	st	st	PROPN
ajb-31	123	18	a	a	X
ajb-31	123	19	te	te	PROPN
ajb-31	123	20	xt	xt	PROPN
ajb-31	124	1	f	f	PROPN
ajb-31	124	2	ro	ro	INTJ
ajb-31	124	3	m	m	VERB
ajb-31	124	4	at	at	ADP
ajb-31	124	5	to	to	ADP
ajb-31	124	6	e	e	PROPN
ajb-31	124	7	xc	xc	PROPN
ajb-31	124	8	el	el	PROPN
ajb-31	124	9	fo	fo	INTJ
ajb-31	124	10	rm	rm	PROPN
ajb-31	124	11	at	at	ADP
ajb-31	124	12	.	.	PUNCT
ajb-31	125	1	a	a	DET
ajb-31	125	2	tla	tla	NOUN
ajb-31	125	3	s	s	PART
ajb-31	125	4	jo	jo	NOUN
ajb-31	125	5	ur	ur	INTJ
ajb-31	125	6	na	na	NOUN
ajb-31	126	1	l	l	NOUN
ajb-31	126	2	o	o	X
ajb-31	127	1	f	f	X
ajb-31	127	2	bi	bi	NOUN
ajb-31	127	3	ol	ol	PROPN
ajb-31	127	4	og	og	PROPN
ajb-31	127	5	y	y	PROPN
ajb-31	127	6	is	be	AUX
ajb-31	127	7	sn	sn	PROPN
ajb-31	127	8	2	2	NUM
ajb-31	127	9	15	15	NUM
ajb-31	127	10	891	891	NUM
ajb-31	127	11	51	51	NUM
ajb-31	127	12	.	.	PUNCT
ajb-31	128	1	p	p	X
ajb-31	128	2	ub	ub	ADJ
ajb-31	128	3	lis	li	NOUN
ajb-31	128	4	he	he	PRON
ajb-31	128	5	d	d	NOUN
ajb-31	128	6	by	by	ADP
ajb-31	128	7	a	a	DET
ajb-31	128	8	tla	tla	NOUN
ajb-31	128	9	s	s	AUX
ajb-31	128	10	pu	pu	INTJ
ajb-31	128	11	bl	bl	PROPN
ajb-31	128	12	ish	ish	VERB
ajb-31	128	13	in	in	ADP
ajb-31	128	14	g	g	PROPN
ajb-31	128	15	,	,	PUNCT
ajb-31	129	1	l	l	NOUN
ajb-31	129	2	p	p	X
ajb-31	130	1	(	(	PUNCT
ajb-31	130	2	w	w	PROPN
ajb-31	130	3	w	w	PROPN
ajb-31	130	4	w	w	PROPN
ajb-31	130	5	.a	.a	PROPN
ajb-31	130	6	tla	tla	AUX
ajb-31	130	7	spu	spu	PROPN
ajb-31	130	8	bl	bl	PROPN
ajb-31	130	9	ish	ish	VERB
ajb-31	130	10	in	in	ADP
ajb-31	130	11	g.	g.	PROPN
ajb-31	130	12	or	or	CCONJ
ajb-31	130	13	g	g	NOUN
ajb-31	130	14	)	)	PUNCT
ajb-31	130	15	figure	figure	NOUN
ajb-31	130	16	2	2	NUM
ajb-31	130	17	.	.	PUNCT
ajb-31	131	1	snp	snp	ADJ
ajb-31	131	2	-	-	PUNCT
ajb-31	131	3	e	e	PROPN
ajb-31	131	4	algorithm	algorithm	NOUN
ajb-31	131	5	flow	flow	NOUN
ajb-31	131	6	chart	chart	NOUN
ajb-31	131	7	.	.	PUNCT
ajb-31	132	1	209	209	NUM
ajb-31	132	2	a	a	DET
ajb-31	132	3	tla	tla	NOUN
ajb-31	132	4	s	s	PART
ajb-31	132	5	jo	jo	NOUN
ajb-31	132	6	ur	ur	INTJ
ajb-31	132	7	na	na	NOUN
ajb-31	132	8	l	l	NOUN
ajb-31	133	1	o	o	X
ajb-31	133	2	f	f	X
ajb-31	133	3	bi	bi	NOUN
ajb-31	133	4	ol	ol	PROPN
ajb-31	133	5	og	og	PROPN
ajb-31	133	6	y	y	PROPN
ajb-31	133	7	is	be	AUX
ajb-31	133	8	sn	sn	PROPN
ajb-31	133	9	2	2	NUM
ajb-31	133	10	15	15	NUM
ajb-31	133	11	891	891	NUM
ajb-31	133	12	51	51	NUM
ajb-31	133	13	.	.	PUNCT
ajb-31	134	1	p	p	X
ajb-31	134	2	ub	ub	ADJ
ajb-31	134	3	lis	li	NOUN
ajb-31	134	4	he	he	PRON
ajb-31	134	5	d	d	NOUN
ajb-31	134	6	by	by	ADP
ajb-31	134	7	a	a	DET
ajb-31	134	8	tla	tla	NOUN
ajb-31	134	9	s	s	AUX
ajb-31	134	10	pu	pu	INTJ
ajb-31	134	11	bl	bl	PROPN
ajb-31	134	12	ish	ish	VERB
ajb-31	134	13	in	in	ADP
ajb-31	134	14	g	g	PROPN
ajb-31	134	15	,	,	PUNCT
ajb-31	135	1	l	l	NOUN
ajb-31	135	2	p	p	X
ajb-31	136	1	(	(	PUNCT
ajb-31	136	2	w	w	PROPN
ajb-31	136	3	w	w	PROPN
ajb-31	136	4	w	w	PROPN
ajb-31	136	5	.a	.a	PROPN
ajb-31	136	6	tla	tla	AUX
ajb-31	136	7	spu	spu	PROPN
ajb-31	136	8	bl	bl	PROPN
ajb-31	136	9	ish	ish	VERB
ajb-31	136	10	in	in	ADP
ajb-31	136	11	g.	g.	PROPN
ajb-31	136	12	or	or	CCONJ
ajb-31	136	13	g	g	NOUN
ajb-31	136	14	)	)	PUNCT
ajb-31	136	15	210	210	NUM
ajb-31	136	16	a	a	DET
ajb-31	136	17	tla	tla	NOUN
ajb-31	136	18	s	s	PART
ajb-31	136	19	jo	jo	NOUN
ajb-31	136	20	ur	ur	INTJ
ajb-31	136	21	na	na	NOUN
ajb-31	137	1	l	l	NOUN
ajb-31	137	2	o	o	X
ajb-31	138	1	f	f	X
ajb-31	138	2	bi	bi	NOUN
ajb-31	138	3	ol	ol	PROPN
ajb-31	138	4	og	og	PROPN
ajb-31	138	5	y	y	PROPN
ajb-31	138	6	is	be	AUX
ajb-31	138	7	sn	sn	PROPN
ajb-31	138	8	2	2	NUM
ajb-31	138	9	15	15	NUM
ajb-31	138	10	891	891	NUM
ajb-31	138	11	51	51	NUM
ajb-31	138	12	.	.	PUNCT
ajb-31	139	1	p	p	X
ajb-31	139	2	ub	ub	ADJ
ajb-31	139	3	lis	li	NOUN
ajb-31	139	4	he	he	PRON
ajb-31	139	5	d	d	NOUN
ajb-31	139	6	by	by	ADP
ajb-31	139	7	a	a	DET
ajb-31	139	8	tla	tla	NOUN
ajb-31	139	9	s	s	AUX
ajb-31	139	10	pu	pu	INTJ
ajb-31	139	11	bl	bl	PROPN
ajb-31	139	12	ish	ish	VERB
ajb-31	139	13	in	in	ADP
ajb-31	139	14	g	g	PROPN
ajb-31	139	15	,	,	PUNCT
ajb-31	140	1	l	l	NOUN
ajb-31	140	2	p	p	X
ajb-31	141	1	(	(	PUNCT
ajb-31	141	2	w	w	PROPN
ajb-31	141	3	w	w	PROPN
ajb-31	141	4	w	w	PROPN
ajb-31	141	5	.a	.a	PROPN
ajb-31	141	6	tla	tla	AUX
ajb-31	141	7	spu	spu	PROPN
ajb-31	141	8	bl	bl	PROPN
ajb-31	141	9	ish	ish	VERB
ajb-31	141	10	in	in	ADP
ajb-31	141	11	g.	g.	PROPN
ajb-31	141	12	or	or	CCONJ
ajb-31	141	13	g	g	NOUN
ajb-31	141	14	)	)	PUNCT
ajb-31	141	15	results	result	NOUN
ajb-31	141	16	and	and	CCONJ
ajb-31	141	17	discussion	discussion	NOUN
ajb-31	141	18	snp	snp	ADJ
ajb-31	141	19	-	-	PUNCT
ajb-31	141	20	e	e	NOUN
ajb-31	141	21	results	result	NOUN
ajb-31	141	22	automated	automate	VERB
ajb-31	141	23	snp	snp	PROPN
ajb-31	141	24	-	-	PUNCT
ajb-31	141	25	e	e	NOUN
ajb-31	141	26	recorded	record	VERB
ajb-31	141	27	800	800	NUM
ajb-31	141	28	snps	snps	NOUN
ajb-31	141	29	from	from	ADP
ajb-31	141	30	polymorphic	polymorphic	ADJ
ajb-31	141	31	region	region	NOUN
ajb-31	141	32	(	(	PUNCT
ajb-31	141	33	figure	figure	NOUN
ajb-31	141	34	3	3	NUM
ajb-31	141	35	-	-	PUNCT
ajb-31	141	36	panel	panel	NOUN
ajb-31	141	37	a	a	NOUN
ajb-31	141	38	)	)	PUNCT
ajb-31	141	39	of	of	ADP
ajb-31	141	40	the	the	DET
ajb-31	141	41	alignment	alignment	NOUN
ajb-31	141	42	among	among	ADP
ajb-31	141	43	forrest	forr	ADJ
ajb-31	141	44	,	,	PUNCT
ajb-31	141	45	asgrow	asgrow	NOUN
ajb-31	141	46	3244	3244	NUM
ajb-31	141	47	and	and	CCONJ
ajb-31	141	48	williams	williams	PROPN
ajb-31	141	49	82	82	NUM
ajb-31	141	50	genomic	genomic	ADJ
ajb-31	141	51	sequences	sequence	NOUN
ajb-31	141	52	(	(	PUNCT
ajb-31	141	53	figure	figure	NOUN
ajb-31	141	54	3	3	NUM
ajb-31	141	55	-	-	PUNCT
ajb-31	141	56	panel	panel	NOUN
ajb-31	141	57	b	b	NOUN
ajb-31	141	58	)	)	PUNCT
ajb-31	141	59	.	.	PUNCT
ajb-31	142	1	of	of	ADP
ajb-31	142	2	those	those	PRON
ajb-31	142	3	,	,	PUNCT
ajb-31	142	4	263	263	NUM
ajb-31	142	5	were	be	AUX
ajb-31	142	6	total	total	ADJ
ajb-31	142	7	nucleotide	nucleotide	ADJ
ajb-31	142	8	insertions	insertion	NOUN
ajb-31	142	9	.	.	PUNCT
ajb-31	143	1	no	no	INTJ
ajb-31	143	2	,	,	PUNCT
ajb-31	143	3	manual	manual	ADJ
ajb-31	143	4	annotation	annotation	NOUN
ajb-31	143	5	was	be	AUX
ajb-31	143	6	needed	need	VERB
ajb-31	143	7	for	for	ADP
ajb-31	143	8	snp	snp	ADJ
ajb-31	143	9	evaluation	evaluation	NOUN
ajb-31	143	10	at	at	ADP
ajb-31	143	11	any	any	DET
ajb-31	143	12	stage	stage	NOUN
ajb-31	143	13	of	of	ADP
ajb-31	143	14	process	process	NOUN
ajb-31	143	15	.	.	PUNCT
ajb-31	144	1	the	the	DET
ajb-31	144	2	results	result	NOUN
ajb-31	144	3	have	have	AUX
ajb-31	144	4	been	be	AUX
ajb-31	144	5	stored	store	VERB
ajb-31	144	6	in	in	ADP
ajb-31	144	7	snp	snp	ADJ
ajb-31	144	8	-	-	ADJ
ajb-31	144	9	e	e	NOUN
ajb-31	144	10	-	-	NOUN
ajb-31	144	11	master	master	NOUN
ajb-31	144	12	-	-	PUNCT
ajb-31	144	13	excel	excel	NOUN
ajb-31	144	14	-	-	PUNCT
ajb-31	144	15	file	file	NOUN
ajb-31	144	16	.	.	PUNCT
ajb-31	145	1	results	result	NOUN
ajb-31	145	2	of	of	ADP
ajb-31	145	3	integration	integration	NOUN
ajb-31	145	4	of	of	ADP
ajb-31	145	5	31	31	NUM
ajb-31	145	6	genomes	genome	NOUN
ajb-31	145	7	snps	snps	NOUN
ajb-31	145	8	the	the	DET
ajb-31	145	9	results	result	NOUN
ajb-31	145	10	indicated	indicate	VERB
ajb-31	145	11	that	that	SCONJ
ajb-31	145	12	the	the	DET
ajb-31	145	13	master	master	NOUN
ajb-31	145	14	-	-	PUNCT
ajb-31	145	15	snps	snps	PROPN
ajb-31	145	16	file	file	NOUN
ajb-31	145	17	(	(	PUNCT
ajb-31	145	18	snp	snp	ADJ
ajb-31	145	19	-	-	PUNCT
ajb-31	145	20	e	e	NOUN
ajb-31	145	21	-	-	NOUN
ajb-31	145	22	master	master	NOUN
ajb-31	145	23	-	-	PUNCT
ajb-31	145	24	excel	excel	NOUN
ajb-31	145	25	-	-	PUNCT
ajb-31	145	26	file	file	NOUN
ajb-31	145	27	)	)	PUNCT
ajb-31	145	28	was	be	AUX
ajb-31	145	29	homogenous	homogenous	ADJ
ajb-31	145	30	ascending	ascend	VERB
ajb-31	145	31	sequentially	sequentially	ADV
ajb-31	145	32	with	with	ADP
ajb-31	145	33	the	the	DET
ajb-31	145	34	31	31	NUM
ajb-31	145	35	-	-	PUNCT
ajb-31	145	36	snps	snps	NOUN
ajb-31	145	37	-	-	PUNCT
ajb-31	145	38	genome	genome	NOUN
ajb-31	145	39	-	-	PUNCT
ajb-31	145	40	consensus	consensus	NOUN
ajb-31	145	41	alignments	alignment	NOUN
ajb-31	145	42	.	.	PUNCT
ajb-31	146	1	the	the	DET
ajb-31	146	2	msa	msa	PROPN
ajb-31	146	3	between	between	ADP
ajb-31	146	4	snps	snps	PROPN
ajb-31	146	5	results	result	VERB
ajb-31	146	6	from	from	ADP
ajb-31	146	7	snp	snp	ADJ
ajb-31	146	8	-	-	PUNCT
ajb-31	146	9	e	e	NOUN
ajb-31	146	10	-	-	NOUN
ajb-31	146	11	master	master	NOUN
ajb-31	146	12	-	-	PUNCT
ajb-31	146	13	excel	excel	NOUN
ajb-31	146	14	-	-	PUNCT
ajb-31	146	15	file	file	NOUN
ajb-31	146	16	,	,	PUNCT
ajb-31	146	17	and	and	CCONJ
ajb-31	146	18	31	31	NUM
ajb-31	146	19	-	-	PUNCT
ajb-31	146	20	columnsnps	columnsnps	ADJ
ajb-31	146	21	-	-	PUNCT
ajb-31	146	22	sequence	sequence	NOUN
ajb-31	146	23	resulted	result	VERB
ajb-31	146	24	in	in	ADP
ajb-31	146	25	one	one	NUM
ajb-31	146	26	aligned	align	VERB
ajb-31	146	27	-	-	PUNCT
ajb-31	146	28	master	master	NOUN
ajb-31	146	29	-	-	PUNCT
ajb-31	146	30	snps	snps	PROPN
ajb-31	146	31	and	and	CCONJ
ajb-31	146	32	31	31	NUM
ajb-31	146	33	-	-	PUNCT
ajb-31	146	34	column	column	NOUN
ajb-31	146	35	-	-	PUNCT
ajb-31	146	36	snps	snps	PROPN
ajb-31	146	37	-	-	PUNCT
ajb-31	146	38	consensus	consensus	NOUN
ajb-31	146	39	-	-	PUNCT
ajb-31	146	40	sequences	sequence	NOUN
ajb-31	146	41	.	.	PUNCT
ajb-31	147	1	the	the	DET
ajb-31	147	2	final	final	ADJ
ajb-31	147	3	results	result	NOUN
ajb-31	147	4	showed	show	VERB
ajb-31	147	5	that	that	SCONJ
ajb-31	147	6	78	78	NUM
ajb-31	147	7	%	%	NOUN
ajb-31	147	8	snps	snps	PROPN
ajb-31	147	9	aligned	align	VERB
ajb-31	147	10	automatically	automatically	ADV
ajb-31	147	11	for	for	SCONJ
ajb-31	147	12	each	each	PRON
ajb-31	147	13	of	of	ADP
ajb-31	147	14	the	the	DET
ajb-31	147	15	31	31	NUM
ajb-31	147	16	-	-	PUNCT
ajb-31	147	17	snpsgenomes	snpsgenome	NOUN
ajb-31	147	18	and	and	CCONJ
ajb-31	147	19	no	no	DET
ajb-31	147	20	manual	manual	ADJ
ajb-31	147	21	annotation	annotation	NOUN
ajb-31	147	22	was	be	AUX
ajb-31	147	23	involved	involve	VERB
ajb-31	147	24	.	.	PUNCT
ajb-31	148	1	therefore	therefore	ADV
ajb-31	148	2	,	,	PUNCT
ajb-31	148	3	sanger	sanger	PROPN
ajb-31	148	4	sequence	sequence	NOUN
ajb-31	148	5	of	of	ADP
ajb-31	148	6	the	the	DET
ajb-31	148	7	bacs	bac	NOUN
ajb-31	148	8	and	and	CCONJ
ajb-31	148	9	next	next	ADJ
ajb-31	148	10	gen	gen	PROPN
ajb-31	148	11	sequence	sequence	NOUN
ajb-31	148	12	of	of	ADP
ajb-31	148	13	genome	genome	NOUN
ajb-31	148	14	inferred	infer	VERB
ajb-31	148	15	that	that	SCONJ
ajb-31	148	16	there	there	PRON
ajb-31	148	17	were	be	VERB
ajb-31	148	18	more	more	ADJ
ajb-31	148	19	than	than	ADP
ajb-31	148	20	1,400	1,400	NUM
ajb-31	148	21	snps	snps	NOUN
ajb-31	148	22	in	in	ADP
ajb-31	148	23	the	the	DET
ajb-31	148	24	80	80	NUM
ajb-31	148	25	kbp	kbp	PROPN
ajb-31	148	26	region	region	NOUN
ajb-31	148	27	introgressed	introgresse	VERB
ajb-31	148	28	from	from	ADP
ajb-31	148	29	peking	peke	VERB
ajb-31	148	30	.	.	PUNCT
ajb-31	149	1	27.97	27.97	NUM
ajb-31	149	2	%	%	NOUN
ajb-31	149	3	of	of	ADP
ajb-31	149	4	the	the	DET
ajb-31	149	5	indels	indel	NOUN
ajb-31	149	6	aligned	align	VERB
ajb-31	149	7	automatically	automatically	ADV
ajb-31	149	8	for	for	ADP
ajb-31	149	9	each	each	PRON
ajb-31	149	10	of	of	ADP
ajb-31	149	11	the	the	DET
ajb-31	149	12	31	31	NUM
ajb-31	149	13	-	-	PUNCT
ajb-31	149	14	snps	snps	NOUN
ajb-31	149	15	-	-	PUNCT
ajb-31	149	16	genomes	genome	NOUN
ajb-31	149	17	and	and	CCONJ
ajb-31	149	18	no	no	DET
ajb-31	149	19	manual	manual	ADJ
ajb-31	149	20	annotation	annotation	NOUN
ajb-31	149	21	was	be	AUX
ajb-31	149	22	needed	need	VERB
ajb-31	149	23	.	.	PUNCT
ajb-31	150	1	sanger	sanger	PROPN
ajb-31	150	2	sequence	sequence	PROPN
ajb-31	150	3	has	have	VERB
ajb-31	150	4	more	more	ADJ
ajb-31	150	5	strength	strength	NOUN
ajb-31	150	6	in	in	ADP
ajb-31	150	7	detecting	detect	VERB
ajb-31	150	8	indels	indel	NOUN
ajb-31	150	9	than	than	ADP
ajb-31	150	10	nextgen	nextgen	NOUN
ajb-31	150	11	sequencing	sequencing	NOUN
ajb-31	150	12	,	,	PUNCT
ajb-31	150	13	so	so	CCONJ
ajb-31	150	14	this	this	PRON
ajb-31	150	15	was	be	AUX
ajb-31	150	16	to	to	PART
ajb-31	150	17	be	be	AUX
ajb-31	150	18	expected	expect	VERB
ajb-31	150	19	(	(	PUNCT
ajb-31	150	20	chang	chang	PROPN
ajb-31	150	21	et	et	PROPN
ajb-31	150	22	al	al	PROPN
ajb-31	150	23	.	.	PROPN
ajb-31	150	24	,	,	PUNCT
ajb-31	150	25	2009	2009	NUM
ajb-31	150	26	;	;	PUNCT
ajb-31	150	27	depristo	depristo	PROPN
ajb-31	150	28	et	et	PROPN
ajb-31	150	29	al	al	PROPN
ajb-31	150	30	.	.	PROPN
ajb-31	150	31	,	,	PUNCT
ajb-31	150	32	2011	2011	NUM
ajb-31	150	33	;	;	PUNCT
ajb-31	150	34	kobold	kobold	PROPN
ajb-31	150	35	et	et	PROPN
ajb-31	150	36	al	al	PROPN
ajb-31	150	37	.	.	PROPN
ajb-31	150	38	,	,	PUNCT
ajb-31	150	39	2009	2009	NUM
ajb-31	150	40	;	;	PUNCT
ajb-31	150	41	li	li	PROPN
ajb-31	150	42	et	et	PROPN
ajb-31	150	43	al	al	PROPN
ajb-31	150	44	.	.	PROPN
ajb-31	150	45	,	,	PUNCT
ajb-31	150	46	2009	2009	NUM
ajb-31	150	47	;	;	PUNCT
ajb-31	150	48	nijveen	nijveen	PROPN
ajb-31	150	49	et	et	PROPN
ajb-31	150	50	al	al	PROPN
ajb-31	150	51	.	.	PROPN
ajb-31	150	52	,	,	PUNCT
ajb-31	150	53	2013	2013	NUM
ajb-31	150	54	)	)	PUNCT
ajb-31	150	55	.	.	PUNCT
ajb-31	151	1	the	the	DET
ajb-31	151	2	methods	method	NOUN
ajb-31	151	3	to	to	PART
ajb-31	151	4	compare	compare	VERB
ajb-31	151	5	sequences	sequence	NOUN
ajb-31	151	6	have	have	VERB
ajb-31	151	7	to	to	PART
ajb-31	151	8	account	account	VERB
ajb-31	151	9	for	for	ADP
ajb-31	151	10	the	the	DET
ajb-31	151	11	sequence	sequence	NOUN
ajb-31	151	12	quality	quality	NOUN
ajb-31	151	13	of	of	ADP
ajb-31	151	14	the	the	DET
ajb-31	151	15	different	different	ADJ
ajb-31	151	16	available	available	ADJ
ajb-31	151	17	methods	method	NOUN
ajb-31	151	18	.	.	PUNCT
ajb-31	152	1	abbreviations	abbreviation	NOUN
ajb-31	152	2	snp	snp	PROPN
ajb-31	152	3	-	-	PUNCT
ajb-31	152	4	e	e	ADJ
ajb-31	152	5	,	,	PUNCT
ajb-31	152	6	single	single	ADJ
ajb-31	152	7	nucleotide	nucleotide	ADJ
ajb-31	152	8	polymorphism	polymorphism	NOUN
ajb-31	152	9	evaluation	evaluation	NOUN
ajb-31	152	10	msas	msa	NOUN
ajb-31	152	11	,	,	PUNCT
ajb-31	152	12	multiple	multiple	ADJ
ajb-31	152	13	sequence	sequence	NOUN
ajb-31	152	14	alignments	alignment	NOUN
ajb-31	152	15	ncbi	ncbi	NOUN
ajb-31	152	16	,	,	PUNCT
ajb-31	152	17	national	national	ADJ
ajb-31	152	18	center	center	NOUN
ajb-31	152	19	for	for	ADP
ajb-31	152	20	biotechnology	biotechnology	NOUN
ajb-31	152	21	information	information	NOUN
ajb-31	152	22	caf	caf	NOUN
ajb-31	152	23	,	,	PUNCT
ajb-31	152	24	column	column	NOUN
ajb-31	152	25	alignment	alignment	NOUN
ajb-31	152	26	format	format	NOUN
ajb-31	152	27	vaf	vaf	PROPN
ajb-31	152	28	,	,	PUNCT
ajb-31	152	29	vertical	vertical	ADJ
ajb-31	152	30	alignment	alignment	NOUN
ajb-31	152	31	format	format	NOUN
ajb-31	152	32	eol	eol	PROPN
ajb-31	152	33	,	,	PUNCT
ajb-31	152	34	end	end	NOUN
ajb-31	152	35	of	of	ADP
ajb-31	152	36	line	line	NOUN
ajb-31	152	37	vis	vis	X
ajb-31	152	38	,	,	PUNCT
ajb-31	152	39	vertical	vertical	ADJ
ajb-31	152	40	isolated	isolate	VERB
ajb-31	152	41	sequence	sequence	NOUN
ajb-31	152	42	snm	snm	PROPN
ajb-31	152	43	,	,	PUNCT
ajb-31	152	44	sequence	sequence	NOUN
ajb-31	152	45	numbering	numbering	NOUN
ajb-31	152	46	method	method	NOUN
ajb-31	152	47	sag	sag	NOUN
ajb-31	152	48	,	,	PUNCT
ajb-31	152	49	sequence	sequence	NOUN
ajb-31	152	50	alignment	alignment	NOUN
ajb-31	152	51	gap	gap	NOUN
ajb-31	152	52	figure	figure	NOUN
ajb-31	152	53	3	3	NUM
ajb-31	152	54	.	.	PUNCT
ajb-31	153	1	examples	example	NOUN
ajb-31	153	2	of	of	ADP
ajb-31	153	3	alignments	alignment	NOUN
ajb-31	153	4	in	in	ADP
ajb-31	153	5	snp	snp	ADJ
ajb-31	153	6	-	-	PROPN
ajb-31	153	7	e.	e.	PROPN
ajb-31	153	8	panel	panel	PROPN
ajb-31	153	9	a	a	DET
ajb-31	153	10	presents	present	VERB
ajb-31	153	11	a	a	DET
ajb-31	153	12	small	small	ADJ
ajb-31	153	13	highly	highly	ADV
ajb-31	153	14	polymorphic	polymorphic	ADJ
ajb-31	153	15	region	region	NOUN
ajb-31	153	16	of	of	ADP
ajb-31	153	17	the	the	DET
ajb-31	153	18	automated	automate	VERB
ajb-31	153	19	final	final	ADJ
ajb-31	153	20	alignment	alignment	NOUN
ajb-31	153	21	of	of	ADP
ajb-31	153	22	forrest	forrest	PROPN
ajb-31	153	23	,	,	PUNCT
ajb-31	153	24	asgrow	asgrow	NOUN
ajb-31	153	25	3244	3244	NUM
ajb-31	153	26	and	and	CCONJ
ajb-31	153	27	williams	williams	PROPN
ajb-31	153	28	82	82	NUM
ajb-31	153	29	genomic	genomic	ADJ
ajb-31	153	30	sequences	sequence	NOUN
ajb-31	153	31	.	.	PUNCT
ajb-31	154	1	panel	panel	NOUN
ajb-31	154	2	b	b	PROPN
ajb-31	154	3	presents	present	VERB
ajb-31	154	4	a	a	DET
ajb-31	154	5	view	view	NOUN
ajb-31	154	6	of	of	ADP
ajb-31	154	7	a	a	DET
ajb-31	154	8	typical	typical	ADJ
ajb-31	154	9	region	region	NOUN
ajb-31	154	10	among	among	ADP
ajb-31	154	11	the	the	DET
ajb-31	154	12	total	total	ADJ
ajb-31	154	13	number	number	NOUN
ajb-31	154	14	of	of	ADP
ajb-31	154	15	snps	snps	PROPN
ajb-31	154	16	.	.	PUNCT
ajb-31	155	1	panel	panel	NOUN
ajb-31	155	2	c	c	PROPN
ajb-31	155	3	presents	present	VERB
ajb-31	155	4	a	a	DET
ajb-31	155	5	view	view	NOUN
ajb-31	155	6	of	of	ADP
ajb-31	155	7	a	a	DET
ajb-31	155	8	typical	typical	ADJ
ajb-31	155	9	region	region	NOUN
ajb-31	155	10	among	among	ADP
ajb-31	155	11	the	the	DET
ajb-31	155	12	total	total	ADJ
ajb-31	155	13	number	number	NOUN
ajb-31	155	14	of	of	ADP
ajb-31	155	15	indels	indel	NOUN
ajb-31	155	16	.	.	PUNCT
ajb-31	156	1	a	a	DET
ajb-31	156	2	tla	tla	NOUN
ajb-31	156	3	s	s	PART
ajb-31	156	4	jo	jo	NOUN
ajb-31	156	5	ur	ur	INTJ
ajb-31	156	6	na	na	NOUN
ajb-31	157	1	l	l	NOUN
ajb-31	157	2	o	o	X
ajb-31	158	1	f	f	X
ajb-31	158	2	bi	bi	NOUN
ajb-31	158	3	ol	ol	PROPN
ajb-31	158	4	og	og	PROPN
ajb-31	158	5	y	y	PROPN
ajb-31	158	6	is	be	AUX
ajb-31	158	7	sn	sn	PROPN
ajb-31	158	8	2	2	NUM
ajb-31	158	9	15	15	NUM
ajb-31	158	10	891	891	NUM
ajb-31	158	11	51	51	NUM
ajb-31	158	12	.	.	PUNCT
ajb-31	159	1	p	p	X
ajb-31	159	2	ub	ub	ADJ
ajb-31	159	3	lis	li	NOUN
ajb-31	159	4	he	he	PRON
ajb-31	159	5	d	d	NOUN
ajb-31	159	6	by	by	ADP
ajb-31	159	7	a	a	DET
ajb-31	159	8	tla	tla	NOUN
ajb-31	159	9	s	s	AUX
ajb-31	159	10	pu	pu	INTJ
ajb-31	159	11	bl	bl	PROPN
ajb-31	159	12	ish	ish	VERB
ajb-31	159	13	in	in	ADP
ajb-31	159	14	g	g	PROPN
ajb-31	159	15	,	,	PUNCT
ajb-31	160	1	l	l	NOUN
ajb-31	160	2	p	p	X
ajb-31	161	1	(	(	PUNCT
ajb-31	161	2	w	w	PROPN
ajb-31	161	3	w	w	PROPN
ajb-31	161	4	w	w	PROPN
ajb-31	161	5	.a	.a	PROPN
ajb-31	161	6	tla	tla	AUX
ajb-31	161	7	spu	spu	PROPN
ajb-31	161	8	bl	bl	PROPN
ajb-31	161	9	ish	ish	VERB
ajb-31	161	10	in	in	ADP
ajb-31	161	11	g.	g.	PROPN
ajb-31	161	12	or	or	CCONJ
ajb-31	161	13	g	g	NOUN
ajb-31	161	14	)	)	PUNCT
ajb-31	161	15	acknowledgements	acknowledgement	NOUN
ajb-31	161	16	the	the	DET
ajb-31	161	17	physical	physical	ADJ
ajb-31	161	18	map	map	NOUN
ajb-31	161	19	location	location	NOUN
ajb-31	161	20	of	of	ADP
ajb-31	161	21	b73p06	b73p06	NOUN
ajb-31	161	22	was	be	AUX
ajb-31	161	23	supported	support	VERB
ajb-31	161	24	by	by	ADP
ajb-31	161	25	the	the	DET
ajb-31	161	26	nsf	nsf	PROPN
ajb-31	161	27	under	under	AUX
ajb-31	161	28	grant	grant	PROPN
ajb-31	161	29	no	no	NOUN
ajb-31	161	30	.	.	NOUN
ajb-31	161	31	9872635	9872635	NUM
ajb-31	161	32	and	and	CCONJ
ajb-31	161	33	0487654	0487654	NUM
ajb-31	161	34	.	.	PUNCT
ajb-31	162	1	any	any	DET
ajb-31	162	2	opinions	opinion	NOUN
ajb-31	162	3	,	,	PUNCT
ajb-31	162	4	findings	finding	NOUN
ajb-31	162	5	,	,	PUNCT
ajb-31	162	6	and	and	CCONJ
ajb-31	162	7	conclusions	conclusion	NOUN
ajb-31	162	8	or	or	CCONJ
ajb-31	162	9	recommendations	recommendation	NOUN
ajb-31	162	10	expressed	express	VERB
ajb-31	162	11	in	in	ADP
ajb-31	162	12	this	this	DET
ajb-31	162	13	material	material	NOUN
ajb-31	162	14	are	be	AUX
ajb-31	162	15	those	those	PRON
ajb-31	162	16	of	of	ADP
ajb-31	162	17	the	the	DET
ajb-31	162	18	author(s	author(s	NOUN
ajb-31	162	19	)	)	PUNCT
ajb-31	162	20	and	and	CCONJ
ajb-31	162	21	do	do	AUX
ajb-31	162	22	not	not	PART
ajb-31	162	23	necessarily	necessarily	ADV
ajb-31	162	24	reflect	reflect	VERB
ajb-31	162	25	the	the	DET
ajb-31	162	26	views	view	NOUN
ajb-31	162	27	of	of	ADP
ajb-31	162	28	the	the	DET
ajb-31	162	29	nsf	nsf	PROPN
ajb-31	162	30	.	.	PROPN
ajb-31	162	31	references	reference	NOUN
ajb-31	162	32	chang	chang	PROPN
ajb-31	162	33	h	h	PROPN
ajb-31	162	34	,	,	PUNCT
ajb-31	162	35	l	l	PROPN
ajb-31	162	36	chuang	chuang	PROPN
ajb-31	162	37	,	,	PUNCT
ajb-31	162	38	y	y	PROPN
ajb-31	162	39	cheng	cheng	PROPN
ajb-31	162	40	,	,	PUNCT
ajb-31	162	41	c	c	PROPN
ajb-31	162	42	ho	ho	PROPN
ajb-31	162	43	,	,	PUNCT
ajb-31	162	44	c	c	PROPN
ajb-31	162	45	wen	wen	PROPN
ajb-31	162	46	,	,	PUNCT
ajb-31	162	47	c	c	PROPN
ajb-31	162	48	yang	yang	PROPN
ajb-31	162	49	(	(	PUNCT
ajb-31	162	50	2009	2009	NUM
ajb-31	162	51	)	)	PUNCT
ajb-31	162	52	seq	seq	NOUN
ajb-31	162	53	-	-	PUNCT
ajb-31	162	54	snping	snping	NOUN
ajb-31	162	55	:	:	PUNCT
ajb-31	162	56	multiple	multiple	ADJ
ajb-31	162	57	-	-	PUNCT
ajb-31	162	58	alignment	alignment	NOUN
ajb-31	162	59	tool	tool	NOUN
ajb-31	162	60	for	for	ADP
ajb-31	162	61	snp	snp	ADJ
ajb-31	162	62	discovery	discovery	PROPN
ajb-31	162	63	,	,	PUNCT
ajb-31	162	64	snp	snp	ADJ
ajb-31	162	65	i	i	PROPN
ajb-31	162	66	d	d	PROPN
ajb-31	162	67	identification	identification	NOUN
ajb-31	162	68	,	,	PUNCT
ajb-31	162	69	and	and	CCONJ
ajb-31	162	70	rflp	rflp	PROPN
ajb-31	162	71	genotyping	genotype	VERB
ajb-31	162	72	.	.	PUNCT
ajb-31	163	1	omics	omics	PROPN
ajb-31	163	2	13:253	13:253	NUM
ajb-31	163	3	-	-	SYM
ajb-31	163	4	260	260	NUM
ajb-31	163	5	.	.	PUNCT
ajb-31	164	1	depristo	depristo	PROPN
ajb-31	164	2	m	m	PROPN
ajb-31	164	3	,	,	PUNCT
ajb-31	164	4	e	e	NOUN
ajb-31	164	5	banks	bank	NOUN
ajb-31	164	6	,	,	PUNCT
ajb-31	164	7	kv	kv	PROPN
ajb-31	164	8	garimella	garimella	PROPN
ajb-31	164	9	,	,	PUNCT
ajb-31	164	10	j	j	PROPN
ajb-31	164	11	maguire	maguire	PROPN
ajb-31	164	12	,	,	PUNCT
ajb-31	164	13	c	c	PROPN
ajb-31	164	14	hartl	hartl	NOUN
ajb-31	164	15	,	,	PUNCT
ajb-31	164	16	a	a	DET
ajb-31	164	17	philippakis	philippakis	NOUN
ajb-31	164	18	,	,	PUNCT
ajb-31	164	19	g	g	PROPN
ajb-31	164	20	del	del	PROPN
ajb-31	164	21	angel	angel	NOUN
ajb-31	164	22	,	,	PUNCT
ajb-31	164	23	m	m	PROPN
ajb-31	164	24	rivas	rivas	PROPN
ajb-31	164	25	,	,	PUNCT
ajb-31	164	26	mea	mea	PROPN
ajb-31	164	27	hanna	hanna	PROPN
ajb-31	164	28	(	(	PUNCT
ajb-31	164	29	2011	2011	NUM
ajb-31	164	30	)	)	PUNCT
ajb-31	164	31	a	a	DET
ajb-31	164	32	framework	framework	NOUN
ajb-31	164	33	for	for	ADP
ajb-31	164	34	variation	variation	NOUN
ajb-31	164	35	discovery	discovery	NOUN
ajb-31	164	36	and	and	CCONJ
ajb-31	164	37	genotyping	genotyping	NOUN
ajb-31	164	38	using	use	VERB
ajb-31	164	39	next	next	ADJ
ajb-31	164	40	-	-	PUNCT
ajb-31	164	41	generation	generation	NOUN
ajb-31	164	42	dna	dna	NOUN
ajb-31	164	43	sequencing	sequence	VERB
ajb-31	164	44	data	datum	NOUN
ajb-31	164	45	.	.	PUNCT
ajb-31	165	1	nature	nature	NOUN
ajb-31	165	2	genetics	genetics	PROPN
ajb-31	165	3	43:491–498	43:491–498	PROPN
ajb-31	165	4	.	.	PUNCT
ajb-31	166	1	hauge	hauge	PROPN
ajb-31	166	2	b	b	NUM
ajb-31	166	3	,	,	PUNCT
ajb-31	166	4	m	m	PROPN
ajb-31	166	5	wang	wang	PROPN
ajb-31	166	6	,	,	PUNCT
ajb-31	166	7	j	j	PROPN
ajb-31	166	8	parsons	parsons	PROPN
ajb-31	166	9	,	,	PUNCT
ajb-31	166	10	l	l	PROPN
ajb-31	166	11	parnell	parnell	PROPN
ajb-31	166	12	(	(	PUNCT
ajb-31	166	13	2006	2006	NUM
ajb-31	166	14	)	)	PUNCT
ajb-31	166	15	methods	method	NOUN
ajb-31	166	16	of	of	ADP
ajb-31	166	17	introgressing	introgresse	VERB
ajb-31	166	18	nucleic	nucleic	ADJ
ajb-31	166	19	acid	acid	NOUN
ajb-31	166	20	molecules	molecule	NOUN
ajb-31	166	21	associated	associate	VERB
ajb-31	166	22	with	with	ADP
ajb-31	166	23	soybean	soybean	NOUN
ajb-31	166	24	cyst	cyst	NOUN
ajb-31	166	25	nematode	nematode	NOUN
ajb-31	166	26	resistance	resistance	NOUN
ajb-31	166	27	into	into	ADP
ajb-31	166	28	soybean	soybean	NOUN
ajb-31	166	29	.	.	PUNCT
ajb-31	167	1	us	we	PRON
ajb-31	167	2	patent	patent	NOUN
ajb-31	167	3	7:154,021	7:154,021	NOUN
ajb-31	167	4	.	.	PUNCT
ajb-31	168	1	hemmati	hemmati	PROPN
ajb-31	168	2	m	m	PROPN
ajb-31	168	3	,	,	PUNCT
ajb-31	168	4	d	d	PROPN
ajb-31	168	5	lightfoot	lightfoot	PROPN
ajb-31	168	6	(	(	PUNCT
ajb-31	168	7	2011	2011	NUM
ajb-31	168	8	)	)	PUNCT
ajb-31	168	9	glycine	glycine	NOUN
ajb-31	168	10	max	max	PROPN
ajb-31	168	11	cultivar	cultivar	NOUN
ajb-31	168	12	forrest	forrest	PROPN
ajb-31	168	13	clone	clone	NOUN
ajb-31	168	14	bac	bac	PROPN
ajb-31	168	15	73p06	73p06	NUM
ajb-31	168	16	genomic	genomic	ADJ
ajb-31	168	17	sequence	sequence	NOUN
ajb-31	168	18	.	.	PUNCT
ajb-31	169	1	genbank	genbank	NOUN
ajb-31	169	2	:	:	PUNCT
ajb-31	169	3	hq0089381	hq0089381	PROPN
ajb-31	169	4	.	.	PUNCT
ajb-31	170	1	kobold	kobold	PROPN
ajb-31	170	2	td	td	PROPN
ajb-31	170	3	,	,	PUNCT
ajb-31	170	4	k	k	PROPN
ajb-31	170	5	chen	chen	PROPN
ajb-31	170	6	,	,	PUNCT
ajb-31	170	7	t	t	PROPN
ajb-31	170	8	wylie	wylie	PROPN
ajb-31	170	9	,	,	PUNCT
ajb-31	170	10	d	d	PROPN
ajb-31	170	11	larson	larson	PROPN
ajb-31	170	12	,	,	PUNCT
ajb-31	170	13	md	md	PROPN
ajb-31	170	14	mclellan	mclellan	PROPN
ajb-31	170	15	,	,	PUNCT
ajb-31	170	16	e	e	PROPN
ajb-31	170	17	mardis	mardis	PROPN
ajb-31	170	18	,	,	PUNCT
ajb-31	170	19	g	g	NOUN
ajb-31	170	20	weinstock	weinstock	NOUN
ajb-31	170	21	,	,	PUNCT
ajb-31	170	22	r	r	PROPN
ajb-31	170	23	wilson	wilson	PROPN
ajb-31	170	24	,	,	PUNCT
ajb-31	170	25	l	l	PROPN
ajb-31	170	26	ding	ding	NOUN
ajb-31	170	27	(	(	PUNCT
ajb-31	170	28	2009	2009	NUM
ajb-31	170	29	)	)	PUNCT
ajb-31	170	30	varscan	varscan	ADJ
ajb-31	170	31	:	:	PUNCT
ajb-31	170	32	variant	variant	ADJ
ajb-31	170	33	detection	detection	NOUN
ajb-31	170	34	in	in	ADP
ajb-31	170	35	massively	massively	ADV
ajb-31	170	36	parallel	parallel	ADJ
ajb-31	170	37	sequencing	sequencing	NOUN
ajb-31	170	38	of	of	ADP
ajb-31	170	39	individual	individual	ADJ
ajb-31	170	40	and	and	CCONJ
ajb-31	170	41	pooled	pool	VERB
ajb-31	170	42	samples	sample	NOUN
ajb-31	170	43	.	.	PUNCT
ajb-31	171	1	bioinformatics	bioinformatic	NOUN
ajb-31	171	2	25:2283–2285	25:2283–2285	NUM
ajb-31	171	3	.	.	PUNCT
ajb-31	172	1	lam	lam	PROPN
ajb-31	172	2	h	h	PROPN
ajb-31	172	3	,	,	PUNCT
ajb-31	172	4	x	x	PROPN
ajb-31	172	5	xu	xu	PROPN
ajb-31	172	6	,	,	PUNCT
ajb-31	172	7	x	x	PROPN
ajb-31	172	8	liu	liu	PROPN
ajb-31	172	9	,	,	PUNCT
ajb-31	172	10	w	w	PROPN
ajb-31	172	11	chen	chen	PROPN
ajb-31	172	12	,	,	PUNCT
ajb-31	172	13	g	g	PROPN
ajb-31	172	14	yang	yang	PROPN
ajb-31	172	15	,	,	PUNCT
ajb-31	172	16	f	f	PROPN
ajb-31	172	17	wong	wong	PROPN
ajb-31	172	18	,	,	PUNCT
ajb-31	172	19	m	m	PROPN
ajb-31	172	20	li	li	PROPN
ajb-31	172	21	,	,	PUNCT
ajb-31	172	22	w	w	VERB
ajb-31	172	23	he	he	PRON
ajb-31	172	24	,	,	PUNCT
ajb-31	172	25	n	n	CCONJ
ajb-31	172	26	qin	qin	INTJ
ajb-31	172	27	,	,	PUNCT
ajb-31	172	28	bea	bea	PROPN
ajb-31	172	29	wang	wang	PROPN
ajb-31	172	30	(	(	PUNCT
ajb-31	172	31	2010	2010	NUM
ajb-31	172	32	)	)	PUNCT
ajb-31	172	33	resequencing	resequencing	NOUN
ajb-31	172	34	of	of	ADP
ajb-31	172	35	31	31	NUM
ajb-31	172	36	wild	wild	ADJ
ajb-31	172	37	and	and	CCONJ
ajb-31	172	38	cultivated	cultivate	VERB
ajb-31	172	39	soybean	soybean	NOUN
ajb-31	172	40	genomes	genome	NOUN
ajb-31	172	41	identifies	identify	VERB
ajb-31	172	42	patterns	pattern	NOUN
ajb-31	172	43	of	of	ADP
ajb-31	172	44	genetic	genetic	ADJ
ajb-31	172	45	diversity	diversity	NOUN
ajb-31	172	46	and	and	CCONJ
ajb-31	172	47	selection	selection	NOUN
ajb-31	172	48	.	.	PUNCT
ajb-31	173	1	nature	nature	NOUN
ajb-31	173	2	genetics	genetics	PROPN
ajb-31	173	3	42:1053	42:1053	ADV
ajb-31	173	4	-	-	SYM
ajb-31	173	5	1059	1059	NUM
ajb-31	173	6	.	.	PUNCT
ajb-31	174	1	li	li	PROPN
ajb-31	174	2	h	h	PROPN
ajb-31	174	3	,	,	PUNCT
ajb-31	174	4	b	b	PROPN
ajb-31	174	5	handsaker	handsaker	NOUN
ajb-31	174	6	,	,	PUNCT
ajb-31	174	7	a	a	DET
ajb-31	174	8	wysoker	wysoker	NOUN
ajb-31	174	9	,	,	PUNCT
ajb-31	174	10	t	t	PROPN
ajb-31	174	11	fennell	fennell	PROPN
ajb-31	174	12	,	,	PUNCT
ajb-31	174	13	j	j	PROPN
ajb-31	174	14	ruan	ruan	PROPN
ajb-31	174	15	,	,	PUNCT
ajb-31	174	16	n	n	PRON
ajb-31	174	17	homer	homer	NOUN
ajb-31	174	18	,	,	PUNCT
ajb-31	174	19	g	g	PROPN
ajb-31	174	20	marth	marth	PROPN
ajb-31	174	21	,	,	PUNCT
ajb-31	174	22	g	g	NOUN
ajb-31	174	23	abecasis	abecasis	NOUN
ajb-31	174	24	,	,	PUNCT
ajb-31	174	25	r	r	NOUN
ajb-31	174	26	durbin	durbin	NOUN
ajb-31	174	27	(	(	PUNCT
ajb-31	174	28	2009	2009	NUM
ajb-31	174	29	)	)	PUNCT
ajb-31	174	30	the	the	DET
ajb-31	174	31	sequence	sequence	NOUN
ajb-31	174	32	alignment	alignment	NOUN
ajb-31	174	33	/	/	SYM
ajb-31	174	34	map	map	NOUN
ajb-31	174	35	format	format	NOUN
ajb-31	174	36	and	and	CCONJ
ajb-31	174	37	samtools	samtool	NOUN
ajb-31	174	38	.	.	PUNCT
ajb-31	175	1	bioinformatics	bioinformatic	NOUN
ajb-31	175	2	25:2078	25:2078	NUM
ajb-31	175	3	–	–	PUNCT
ajb-31	175	4	2079	2079	NUM
ajb-31	175	5	.	.	PUNCT
ajb-31	176	1	nijveen	nijveen	PROPN
ajb-31	176	2	h	h	PROPN
ajb-31	176	3	,	,	PUNCT
ajb-31	176	4	m	m	PROPN
ajb-31	176	5	van	van	PROPN
ajb-31	176	6	kaauwen	kaauwen	PROPN
ajb-31	176	7	,	,	PUNCT
ajb-31	176	8	d	d	X
ajb-31	176	9	esselink	esselink	PROPN
ajb-31	176	10	,	,	PUNCT
ajb-31	176	11	b	b	X
ajb-31	176	12	hoegen	hoegen	X
ajb-31	176	13	,	,	PUNCT
ajb-31	176	14	b	b	PROPN
ajb-31	176	15	vosman	vosman	NOUN
ajb-31	176	16	(	(	PUNCT
ajb-31	176	17	2013	2013	NUM
ajb-31	176	18	)	)	PUNCT
ajb-31	176	19	qualitysnpng	qualitysnpng	PROPN
ajb-31	176	20	:	:	PUNCT
ajb-31	176	21	a	a	DET
ajb-31	176	22	user	user	NOUN
ajb-31	176	23	-	-	PUNCT
ajb-31	176	24	friendly	friendly	ADJ
ajb-31	176	25	snp	snp	ADJ
ajb-31	176	26	detection	detection	NOUN
ajb-31	176	27	and	and	CCONJ
ajb-31	176	28	visualization	visualization	NOUN
ajb-31	176	29	tool	tool	NOUN
ajb-31	176	30	.	.	PUNCT
ajb-31	177	1	nucleic	nucleic	ADJ
ajb-31	177	2	acids	acid	NOUN
ajb-31	177	3	research	research	NOUN
ajb-31	177	4	advance	advance	NOUN
ajb-31	177	5	access:1	access:1	NOUN
ajb-31	177	6	-	-	PUNCT
ajb-31	177	7	4	4	NUM
ajb-31	177	8	.	.	PUNCT
ajb-31	178	1	ruben	ruben	PROPN
ajb-31	178	2	e	e	PROPN
ajb-31	178	3	,	,	PUNCT
ajb-31	178	4	a	a	DET
ajb-31	178	5	jamai	jamai	NOUN
ajb-31	178	6	,	,	PUNCT
ajb-31	178	7	j	j	PROPN
ajb-31	178	8	afzal	afzal	PROPN
ajb-31	178	9	,	,	PUNCT
ajb-31	178	10	v	v	X
ajb-31	178	11	njiti	njiti	ADV
ajb-31	178	12	,	,	PUNCT
ajb-31	178	13	k	k	PROPN
ajb-31	178	14	triwitayakorn	triwitayakorn	PROPN
ajb-31	178	15	,	,	PUNCT
ajb-31	178	16	m	m	PROPN
ajb-31	178	17	iqbal	iqbal	ADJ
ajb-31	178	18	,	,	PUNCT
ajb-31	178	19	s	s	PART
ajb-31	178	20	yaegashi	yaegashi	PROPN
ajb-31	178	21	,	,	PUNCT
ajb-31	178	22	r	r	NOUN
ajb-31	178	23	bashir	bashir	NOUN
ajb-31	178	24	,	,	PUNCT
ajb-31	178	25	s	s	PART
ajb-31	178	26	kazi	kazi	PROPN
ajb-31	178	27	,	,	PUNCT
ajb-31	178	28	p	p	PRON
ajb-31	178	29	arelli	arelli	NOUN
ajb-31	178	30	,	,	PUNCT
ajb-31	178	31	c	c	PROPN
ajb-31	178	32	town	town	NOUN
ajb-31	178	33	,	,	PUNCT
ajb-31	178	34	h	h	PROPN
ajb-31	178	35	ishihara	ishihara	PROPN
ajb-31	178	36	,	,	PUNCT
ajb-31	178	37	k	k	PROPN
ajb-31	178	38	meksem	meksem	PROPN
ajb-31	178	39	,	,	PUNCT
ajb-31	178	40	d	d	X
ajb-31	178	41	lightfoot	lightfoot	PROPN
ajb-31	178	42	(	(	PUNCT
ajb-31	178	43	2006	2006	NUM
ajb-31	178	44	)	)	PUNCT
ajb-31	178	45	genomic	genomic	NOUN
ajb-31	178	46	analysis	analysis	NOUN
ajb-31	178	47	of	of	ADP
ajb-31	178	48	the	the	DET
ajb-31	178	49	rhg1	rhg1	PROPN
ajb-31	178	50	/	/	SYM
ajb-31	178	51	rfs2	rfs2	PROPN
ajb-31	178	52	locus	locus	NOUN
ajb-31	178	53	:	:	PUNCT
ajb-31	178	54	candidate	candidate	NOUN
ajb-31	178	55	genes	gene	NOUN
ajb-31	178	56	that	that	PRON
ajb-31	178	57	underlie	underlie	VERB
ajb-31	178	58	soybean	soybean	NOUN
ajb-31	178	59	resistance	resistance	NOUN
ajb-31	178	60	to	to	ADP
ajb-31	178	61	the	the	DET
ajb-31	178	62	cyst	cyst	NOUN
ajb-31	178	63	nematode	nematode	NOUN
ajb-31	178	64	.	.	PUNCT
ajb-31	179	1	mol	mol	ADP
ajb-31	179	2	genet	genet	PROPN
ajb-31	179	3	genom	genom	PROPN
ajb-31	179	4	276:503	276:503	PROPN
ajb-31	179	5	-	-	PUNCT
ajb-31	179	6	516	516	NUM
ajb-31	179	7	.	.	PUNCT
ajb-31	180	1	srour	srour	VERB
ajb-31	180	2	a	a	PRON
ajb-31	180	3	,	,	PUNCT
ajb-31	180	4	a	a	DET
ajb-31	180	5	afzal	afzal	PROPN
ajb-31	180	6	,	,	PUNCT
ajb-31	180	7	n	n	PROPN
ajb-31	180	8	saini	saini	NOUN
ajb-31	180	9	,	,	PUNCT
ajb-31	180	10	l	l	PROPN
ajb-31	180	11	blahut	blahut	PROPN
ajb-31	180	12	-	-	PUNCT
ajb-31	180	13	beatty	beatty	PROPN
ajb-31	180	14	,	,	PUNCT
ajb-31	180	15	n	n	CCONJ
ajb-31	180	16	hemmati	hemmati	NOUN
ajb-31	180	17	,	,	PUNCT
ajb-31	180	18	d	d	PROPN
ajb-31	180	19	simmonds	simmond	NOUN
ajb-31	180	20	,	,	PUNCT
ajb-31	180	21	h	h	PROPN
ajb-31	180	22	el	el	PROPN
ajb-31	180	23	shemy	shemy	PROPN
ajb-31	180	24	,	,	PUNCT
ajb-31	180	25	c	c	NOUN
ajb-31	180	26	town	town	NOUN
ajb-31	180	27	,	,	PUNCT
ajb-31	180	28	h	h	PROPN
ajb-31	180	29	sharma	sharma	PROPN
ajb-31	180	30	,	,	PUNCT
ajb-31	180	31	d	d	PROPN
ajb-31	180	32	lightfoot	lightfoot	PROPN
ajb-31	180	33	(	(	PUNCT
ajb-31	180	34	2012	2012	NUM
ajb-31	180	35	)	)	PUNCT
ajb-31	180	36	the	the	DET
ajb-31	180	37	receptor	receptor	NOUN
ajb-31	180	38	like	like	ADP
ajb-31	180	39	kinase	kinase	PROPN
ajb-31	180	40	transgene	transgene	NOUN
ajb-31	180	41	from	from	ADP
ajb-31	180	42	the	the	DET
ajb-31	180	43	rhg1	rhg1	PROPN
ajb-31	180	44	/	/	SYM
ajb-31	180	45	rfs2	rfs2	PROPN
ajb-31	180	46	locus	locus	PROPN
ajb-31	180	47	caused	cause	VERB
ajb-31	180	48	pleiotropic	pleiotropic	ADJ
ajb-31	180	49	resistances	resistance	NOUN
ajb-31	180	50	to	to	ADP
ajb-31	180	51	soybean	soybean	NOUN
ajb-31	180	52	cyst	cyst	NOUN
ajb-31	180	53	nematode	nematode	NOUN
ajb-31	180	54	and	and	CCONJ
ajb-31	180	55	sudden	sudden	ADJ
ajb-31	180	56	death	death	NOUN
ajb-31	180	57	syndrome	syndrome	NOUN
ajb-31	180	58	.	.	PUNCT
ajb-31	181	1	bmc	bmc	PROPN
ajb-31	181	2	genomics	genomic	NOUN
ajb-31	181	3	13:368	13:368	PROPN
ajb-31	181	4	.	.	PUNCT
ajb-31	182	1	wegrzyn	wegrzyn	PROPN
ajb-31	182	2	j	j	PROPN
ajb-31	182	3	,	,	PUNCT
ajb-31	182	4	j	j	PROPN
ajb-31	182	5	lee	lee	PROPN
ajb-31	182	6	,	,	PUNCT
ajb-31	182	7	j	j	PROPN
ajb-31	182	8	liechty	liechty	NOUN
ajb-31	182	9	,	,	PUNCT
ajb-31	182	10	d	d	PROPN
ajb-31	182	11	neale	neale	PROPN
ajb-31	182	12	(	(	PUNCT
ajb-31	182	13	2009	2009	NUM
ajb-31	182	14	)	)	PUNCT
ajb-31	182	15	sequence	sequence	NOUN
ajb-31	182	16	analysis	analysis	NOUN
ajb-31	182	17	,	,	PUNCT
ajb-31	182	18	pinesap	pinesap	NOUN
ajb-31	182	19	—	—	PUNCT
ajb-31	182	20	sequence	sequence	NOUN
ajb-31	182	21	alignment	alignment	NOUN
ajb-31	182	22	and	and	CCONJ
ajb-31	182	23	snp	snp	ADJ
ajb-31	182	24	identification	identification	NOUN
ajb-31	182	25	pipeline	pipeline	NOUN
ajb-31	182	26	.	.	PUNCT
ajb-31	183	1	bioinformatics	bioinformatics	NOUN
ajb-31	183	2	application	application	NOUN
ajb-31	183	3	note	note	NOUN
ajb-31	183	4	25:2609	25:2609	NOUN
ajb-31	183	5	-	-	SYM
ajb-31	183	6	2610	2610	NUM
ajb-31	183	7	.	.	PUNCT
ajb-31	184	1	xu	xu	PROPN
ajb-31	185	1	f	f	X
ajb-31	185	2	,	,	PUNCT
ajb-31	185	3	w	w	PROPN
ajb-31	185	4	wang	wang	PROPN
ajb-31	185	5	,	,	PUNCT
ajb-31	185	6	p	p	PROPN
ajb-31	185	7	wang	wang	PROPN
ajb-31	185	8	,	,	PUNCT
ajb-31	185	9	m	m	PROPN
ajb-31	185	10	jun	jun	PROPN
ajb-31	185	11	li	li	PROPN
ajb-31	185	12	,	,	PUNCT
ajb-31	185	13	p	p	PROPN
ajb-31	185	14	chung	chung	PROPN
ajb-31	185	15	sham	sham	PROPN
ajb-31	185	16	,	,	PUNCT
ajb-31	185	17	j	j	PROPN
ajb-31	185	18	wang	wang	PROPN
ajb-31	185	19	(	(	PUNCT
ajb-31	185	20	2012	2012	NUM
ajb-31	185	21	)	)	PUNCT
ajb-31	185	22	a	a	PRON
ajb-31	185	23	fast	fast	ADJ
ajb-31	185	24	and	and	CCONJ
ajb-31	185	25	accurate	accurate	ADJ
ajb-31	185	26	snp	snp	ADJ
ajb-31	185	27	detection	detection	NOUN
ajb-31	185	28	algorithm	algorithm	NOUN
ajb-31	185	29	for	for	ADP
ajb-31	185	30	next	next	ADJ
ajb-31	185	31	-	-	PUNCT
ajb-31	185	32	generation	generation	NOUN
ajb-31	185	33	sequencing	sequence	VERB
ajb-31	185	34	data	datum	NOUN
ajb-31	185	35	.	.	PUNCT
ajb-31	186	1	nature	nature	NOUN
ajb-31	186	2	communications	communications	PROPN
ajb-31	186	3	3:1258	3:1258	NUM
ajb-31	186	4	.	.	PUNCT
ajb-31	187	1	zhang	zhang	PROPN
ajb-31	187	2	j	j	PROPN
ajb-31	187	3	,	,	PUNCT
ajb-31	187	4	d	d	NOUN
ajb-31	187	5	wheeler	wheeler	NOUN
ajb-31	187	6	,	,	PUNCT
ajb-31	187	7	i	i	PRON
ajb-31	187	8	yakub	yakub	NOUN
ajb-31	187	9	,	,	PUNCT
ajb-31	187	10	s	s	VERB
ajb-31	187	11	wei	wei	PROPN
ajb-31	187	12	,	,	PUNCT
ajb-31	187	13	r	r	NOUN
ajb-31	187	14	sood	sood	NOUN
ajb-31	187	15	,	,	PUNCT
ajb-31	187	16	w	w	PROPN
ajb-31	187	17	rowe	rowe	PROPN
ajb-31	187	18	,	,	PUNCT
ajb-31	187	19	p	p	PROPN
ajb-31	187	20	liu	liu	PROPN
ajb-31	187	21	,	,	PUNCT
ajb-31	187	22	r	r	NOUN
ajb-31	187	23	gibbs	gibbs	PROPN
ajb-31	187	24	,	,	PUNCT
ajb-31	187	25	k	k	PROPN
ajb-31	187	26	buetow	buetow	PROPN
ajb-31	187	27	(	(	PUNCT
ajb-31	187	28	2005	2005	NUM
ajb-31	187	29	)	)	PUNCT
ajb-31	187	30	snpdetector	snpdetector	NOUN
ajb-31	187	31	:	:	PUNCT
ajb-31	187	32	a	a	DET
ajb-31	187	33	software	software	NOUN
ajb-31	187	34	tool	tool	NOUN
ajb-31	187	35	for	for	ADP
ajb-31	187	36	sensitive	sensitive	ADJ
ajb-31	187	37	and	and	CCONJ
ajb-31	187	38	accurate	accurate	ADJ
ajb-31	187	39	snp	snp	ADJ
ajb-31	187	40	detection	detection	NOUN
ajb-31	187	41	.	.	PUNCT
ajb-31	188	1	plos	plos	PROPN
ajb-31	188	2	computational	computational	ADJ
ajb-31	188	3	biology	biology	NOUN
ajb-31	188	4	1:395	1:395	PROPN
ajb-31	188	5	-	-	PUNCT
ajb-31	188	6	404	404	NUM
ajb-31	188	7	.	.	PUNCT
ajb-31	188	8	211	211	NUM