id	author	title	date	pages	extension	mime	words	sentence	flesch	summary	cache	txt
cord-300944-c57impca	Huang, Xiaolan	A Genome-Wide Analysis of RNA Pseudoknots That Stimulate Efficient −1 Ribosomal Frameshifting or Readthrough in Animal Viruses	2013-11-04		.txt	text/plain	8631	347	54	Venezuelan equine encephalitis virus (VEEV, NC 001449); Western equine encephalitis virus Whataroa virus (WHAV, AF339479) Recoding: reprogrammed genetic decoding Recoding: translational bifurcations in gene expression Ribosome gymnastics-degree of difficulty 9.5, style 10.0 Recoding: dynamic reprogramming of translation Viral RNA pseudoknots: versatile motifs in gene expression and replication Normal tRNAs promote ribosomal frameshifting Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting A new principle of RNA folding based on pseudoknotting Pseudoknots: a new motif in the RNA game Structural and functional aspects of RNA pseudoknots Ribosomal frameshifting on viral RNAs Programmed translational frameshifting Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting Programmed ribosomal frameshifting in decoding the SARS-CoV genome Regulation of programmed ribosomal frameshifting by cotranslational refolding RNA hairpins Programmed -1 ribosomal frameshifting in the SARS coronavirus A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal An atypical RNA pseudoknot stimulator and an upstream attenuation signal for -1 ribosomal frameshifting of SARS coronavirus Frameshifting in alphaviruses: a diversity of 3' stimulatory structures Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon Bipartite signal for read-through suppression in murine leukemia virus mRNA: an eight-nucleotide purine-rich sequence immediately downstream of the gag termination codon followed by an RNA pseudoknot RNA pseudoknots: translational frameshifting and readthrough on viral RNAs Pseudoknot-dependent read-through of retroviral gag termination codons: importance of sequences in the spacer and loop 2 Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency Solution structure of a luteoviral P1-P2 frameshifting mRNA pseudoknot Crystal structure of a luteoviral RNA pseudoknot and model for a minimal ribosomal frameshifting motif A loop 2 cytidinestem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency Ribosomal pausing during translation of an RNA pseudoknot Ribosomal movement impeded at a pseudoknot required for frameshifting A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting Torsional restraint: a new twist on frameshifting pseudoknots Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting Characterization of the mechanical unfolding of RNA pseudoknots MRNA pseudoknot structures can act as ribosomal roadblocks Predicting thermodynamic properties of RNA Recode-2: new design, new search tools, and many more genes Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV Complete genomic sequence and phylogenetic analysis of the lactate dehydrogenase-elevating virus The involvement of RNA pseudoknots in stop codon readthrough has also been established.	cache/cord-300944-c57impca.txt	txt/cord-300944-c57impca.txt
