511 (Sri Wida - Potency).cdr


POTENCY OF RHIZOSPHERE BACTERIA TO PROMOTE 
RICE GROWTH UNDER SALINE CONDITION

*
SRI WIDAWATI  and I MADE SUDIANA

Research Center for Biology, Indonesian Institute of  Sciences CSC-LIPI, Bogor 16911, Indonesia

Received: 8 July  2015/Accepted: 25 July 2016

ABSTRACT

 Saline soil is a common problem in coastal paddy field, especially in Indonesia. Salinity affects rice growth and the 
activities of  soil functional microbes, including functional bacteria, which play roles in plant growth. Some of  these 
microbes are associated with rice plants and are able to survive under saline condition. The presence of  functional 
microbes is also important to improve soil quality. Nitrogen and phosphate are essential soil nutrients and is available in 
soil due to the activities of  nitrogen-fixing bacteria and free-living plant-associated bacteria. The objective of  the 
present study was to obtain nitrogen-fixing, phosphate solubilizing and Indole Acetic Acid  (IAA)-producing bacteria 
that are able to survive and promote the growth of  rice under saline conditions. From rice and peanut rhizosphere, Ca-
phosphate (Ca-P) solubilizing and nitrogen-fixing bacteria were isolated separately using specific media. Then, the Ca-
P solubilizing ability, phosphomonoesterase activity and IAA-producing ability were quantitatively examined. Based 
on the abilities, 20 strains were selected and identified as Burkholderia cepacia-complex, Burkholderia anthina, Burkholderia 
cenocepacia, Bacillus cereus-complex (three strains), Achromobacter spanius, Azospirillum sp. (four strains), Azotobacter sp. 
(three strains), Rhizobium leguminosarum, Rhizobium sp. (two strains), and Pseudomonas sp. (three strains). The inoculation 
of  several single strains or the mixture of  the selected strains promoted the growth of  rice under saline conditions. 
These inoculants could be potential as biofertilizer in saline paddy fields. 

 Keywords: Indole Acetic Acid production,  phosphate solubilization, plant growth promoting bacteria, nitrogen 
fixation, rhizosphere, rice

INTRODUCTION

Most of  the fertile paddy fields in Indonesia 
are located in coastal area and experiences soil 
salinization due to seawater intrusion (Djufry et al. 
2011). Salinity affects not only the growth of  rice 
(Oryza sativa Linn.),  but also the activities of  
functional soil microbes, including bacteria,   that 
play roles in mineralization of  macro and 
microelements for plant growth (Balser et al. 
2006). Some of  these bacteria are associated with 
rice plants and are able to survive under saline 
condition. The activity of  soil microbes is an 
important aspect of  biogeochemical cycles of  
carbon, nitrogen, sulfur, phosphorus, etc. (Banig 
et al. 2008). The presence of  functional microbes 
is also important to improve the quality of  soil 
(Wijebandara et al. 2009). Nitrogen and phosphate 
are essential nutrients and are available in soil due 
to the activities of  nitrogen-fixing bacteria and 

free-living plant-associated bacteria (Steenhoudt 
& Vanderleyden 2000). Several bacteria belonging 
to the genera Rhizobium, Azotobacter  and 
Azospirillum are able to fix nitrogen and solubilize 
phosphate (Nosrati et al.  2014). Some members 
of  these genera also produce plant growth 
promoting hormone such as Indole Acetic Acid 
(IAA), gibberellins and cytokinins (Bhattacharyya 
& Jha 2012). Therefore, these genera are regarded 
as important components of  biofertilizer (Rao 
1994; Bhattacharjee & Dey 2014). Introduction 
of  growth promoting bacteria can increase 
nitrogen availability for plants and enhance crop 
productivity. However, very little information is 
available for the effect of  salinity on bacteria that 
have beneficial functions, such as nitrogen 
fixation, phosphate solubilization and the 
production of  plant growth hormone (Pliego et al. 
2011; Lugtenberg et al. 2013; Nakbanpote et al. 
2014). The purpose of  this study is to obtain 
nitrogen-fixing, phosphate solubilizing and IAA 
producing bacteria that are able to survive and 

BIOTROPIA 3 2 6 116 123 Vol. 2  No. , 201 :   - DOI: 10.11598/btb.2016.2 . .3 2 511

* Corresponding author: widadomon@yahoo.com

116



promote the growth of  rice under saline 
conditions.

MATERIALS AND METHODS

Bacterial Sources

 Bacterial sources were obtained from collected 
rhizosphere of  rice (Oryza sativa) and peanut 
(Arachis hypogaea) cultivated in the research field of  
Cibinong Science Center, West Java Province, 
Indonesia. The physical and chemical properties 
of  this research field indicated that the soil is 
infertile soil (Table 1).

Isolation of  Bacteria

 Phosphate solubilizing bacteria were screened 
following the method of  Park et al. (2011). Halo 
zone formation around colonies after 7 day-
cultivation at 30 °C on Pikovskaya medium was 
used as an indicator of  Ca-Phosphate (Ca-P) 
solubilization (Nguyen et al. 1992). Nitrogen-
fixing bacteria were isolated targeting the genera 
Rhizobium, Azopirillum and Azotobacter according 
to Mubarik et al. (2011) and Salamone et al. (2012) 
as well as Aquilanti and Clementi (2004), 
respectively.

Determination of  Ca-P Solubilization

 Ca-P solubilizing ability of  the isolated strains 
was quantitatively determined according to Chen 
et al. (2006) by measuring orthophosphate in the 
culture fluid after 7 days of  cultivation. 
Orthosphosphate determination was conducted 
according to Vassileva et al. (2000).

Determination of  Phosphatase Activity

 Extracellular phosphomonoesterase (PMEase) 
activity of  the strains was determined following 

the method of  Tabatabai and Bremner (1969) 
using p-nitrophenyl phosphate. The unit of  the 
PMEase activity was defined as µmol/hof  p-
nitrophenol released in 1 mL of  extracellular 
enzyme solution that was fractioned from 1.0 mL 
of  the culture fluid after 7 days of  cultivation.

Determination of  IAA Production

 The IAA production of  the strains was 
investigated after 7 days of  cultivation, following 
the methods of  Crozier et al. (1988) and Gravel et 
al. (2007).

Selection and Identification of  Bacteria

 Based on the Ca-P solubilization, PMEase 
activity and IAA production abilities, a total of  
20 strains were selected from the above strains 
for rice growth assays. Identification of  the 20 
strains was performed following the method 
of  Otsuka et al. (2008) based on the 16S rRNA 
g e n e  s e q u e n c e  w i t h  1 6 S - 9 F  ( 5 -  
GAGTTTGATCCTGGCTCAG-3) and 16S-
1 5 1 0 R  ( 5 - G G C T AC C T T G T T AC G A - 3 )  
primers.

Rice Growth Assay at the Stage of  
Germination under Saline Condition

 One strain out of  10 taxonomic groups was 
selected and subjected to a root and shoot growth 
assay of  rice at the stage of  germination based on 
Zaller (2007) and Cerabolini et al. (2004). Briefly, 
ten seeds of  three rice cultivars, INPARA-3, 
INPARI-13 and INPARA-6 were soaked in sterile 
water for 5 hours in their respective containers.  
These 10 rice seeds were then arranged based on 
their respective cultivars on top of  filter paper 
which was put  inside  a Petridish (20 cm in 
diameter). Fifteen milliliter of  4.0 g/L NaCl 
solution was poured onto the filter paper inside 

     Table 1  Physical and chemical properties of  soils in the research field
 

Parameter  
P  

(%)
 

K  
(%)

 

C  
(%)

 

N  
(%)

 

C/N  
ratio

 

Ca  
(%)

 

Exchangable  
Mg   
(%)

 

Exchangable 
Na   
(%)

 

Exchangable 
Al dd   
(%)

 

Soil 
pH

 

Amount 
of

bacteria 
population

 Characteristic
 0.173

 

0.045 1.303

 

0.36

 

3.61

 

11.41

 

0.57 0.30 0.04

 

5.8

 

10
4
-10

5

Determined 
accoding  to 

Rowell (1994)

 

Very 
low

 

Very 
low

 

Low

 

Moderate

 

Very 
low

 

High

 

Low

 

Low

 

Low

 

Acid Infertile

117

 
 Promoting rice growth using rhizosphere – Widawati  and Sudiana



each Petridish, on which 10 rice seeds were lined 
up, followed by 1.0 mL of  bacterial inoculant 

9 
suspension containing 10 cells/mL. Root and 
shoot lengths were measured at 7 days after 
germination. This experiment was set up using 
Complete Randomized Design with three 
replications.

Rice Growth Assay at 45 Days after Planting 
under Saline and Non-Saline Conditions

 Ten strains out of  20 isolates tested  on 
germination test were then subjected to rice 
growth assay for 45 days under  saline condition 
with 0.4% NaCl.  The number of  cells for each 

7
treatment was adjusted to about 3.2 x 10 . This 
value was selected based on the number of  
bacteria commonly found  in paddy field soil.  
In a preliminary test (rice growth assay at the stage 
of  germination), INPARI-13 and INPARA-6 
could not grow well under the same saline 
condition. Therefore, only INPARA-3 was used 
in this assay. Four seeds of  INPARA-3 were 
planted to experimental pots (0.5 gallon pots) 
containing sterile sands (1.5 kg) flooded with 
water(field capacity of  sands = 24% or 360 mL ).  
Treatments applied were: 1. Saline condition 
(adding 360 mL of  0.4% NaCl (6 g NaCl) to the 
0.5 gallon pots) and 2. non-saline condition 

(without 0.4% NaCl). Into each pot, 5 mL of   
bacterial inoculant suspension was added. The 
result of  experiment is shown in Table 5. After 7 
days, the second inoculation with the same 
amount of  bacterial suspension was conducted. 
The water level in pot was regulated by adding 
sterile water to compensate water decrease 
due to evaporation. The electrical conductivity 
(EC) value of  the assay media under saline 
condition was kept at 7.5 mS/cm.  At 45 days 
after planting the growth of  rice was evaluated. 
This experiment was set as complete randomized 
design performed with three replications.

RESULTS AND DISCUSSION

Composition of  the Strains

 The selected 20 strains, originated from the 
rhizosphere of  rice and peanut, belonged to the 
genera Burkholderia, Bacillus, Achromobacter, 
Pseudomonas, Azospirillum, Rhizobium and 
Azotobacter (Table 2). The selected strains were 
originated from non-saline soil. The reason for 
the selection was to compare the physiological 
characteristics of  microbes isolated from saline 
and non-saline soil. The result of  this study 
showed that the functional microbes for 

Table 2  List of  bacteria isolated from rice and peanut rhizosphere

Isolate  
code*  

Phylum/class**  Taxon  Source  
(rhizosphere)  

CSC P1  
CSC P2  
CSC P3  
CSC P4  
CSC P5  
CSC P6  
CSC P7  
CSC P8  
CSC P9  
CSC P10  
CSC P11

 
CSC P12

 
CSC N1

 
CSC N2

 
CSC N3

 
CSC N7

 
CSC N8

 CSC N9
 CSC N10
 CSC N11

Proteobacteria/Beta-  
Proteobacteria/Beta-  
Firmicutes/Bacilli  
Proteobacteria/Beta-  
Firmicutes/Bacilli  
Proteobacteria/Gamma-  
Proteobacteria/Alpha-  
Proteobacteria/Alpha-  
Proteobacteria/Alpha-  
Proteobacteria/Gamma-  
Proteobacteria/Gamma-

 
Proteobacteria/Beta-

 
Proteobacteria/Alpha-

 
Proteobacteria/Gamma-

 
Proteobacteria/Alpha-

 
Proteobacteria/Alpha-

 
Firmicutes/Bacilli

 Proteobacteria/Gamma-
 Proteobacteria/Gamma-

Proteobacteria/Alpha-

 

 

 

Rice  
Rice  
Rice  
Rice  
Rice  
Rice  
Rice   
Rice  
Rice  
Rice  
Rice 

 
Rice 

 
Peanut 

 
Peanut 

 
Peanut 

 
Peanut 

 
Peanut 

 Peanut 
 Peanut 
 Peanut

Notes: * = A Strain with P in its code were isolated as Ca-P solubilizing bacteria, and that with N were isolated as nitrogen fixing bacteria
 ** = Alpha-, Beta-  and Gamma- denote the classes Alphaproteobacteria,  Betaproteobacteria and Gammaproteobacteria,  respectively

Burkholderia cepacia-complex
Burkholderia cenocepacia
Bacillus cereus-complex
Achromobacter spanius
Bacillus cereus-complex
Pseudomonas sp.
Azospirillum sp.
Azospirillum sp.
Rhizobium sp.
Azotobacter sp.
Azotobacter sp.
Burkholderia anthina
Rhizobium sp.
Pseudomonas sp.
Rhizobium leguminosarum
Azospirillum sp.
Bacillus cereus-complex
Azotobacter sp.
Pseudomonas sp.
Azospirillum sp.

118

BIOTROPIA Vol. 23 No. 2, 2016



promoting rice growth were not different from 
that reported by Susilowati et al. (2015).

Phosphate Solubilizing Ability of  the Strains

 Ca-P solubilizing ability of  the strains is shown 
in Table 3. The difference in the strength of  Ca-P 
solubilizing ability was not related to the 
taxonomic property. All strains formed halo zone 
around colonies, and the area ratio of  the halo 
zone to a colony was variable (data not shown) 
indicating the ability to solubilize Ca-P differed 
among the strains. This was reflected in the Ca-P 
solubilizing ability which was quantitatively 
determined (Table 3). The highest Ca-P 
solubilization ability was shown by Pseudomonas sp. 
CSC N2 and the lowest was shown by 
Achromobacter spanius CSC P4. The activity of  
PMEase is shown in Table 3. Pseudomonas sp. 
CSCN2 again showed the highest PMEase 
activity, and Achromobacter spanius CSC P4 seemed 
to have no extracellular PMEase activity.

Nitrogen-Fixing Ability of  the Strains

 All strains belonging to Rhizobium, Azotobacter 
and Azospirillum  genera were able to grow on 
nitrogen-limited media implying that these strains 
were able to fix nitrogen (Chien et al. 1992).

IAA Production of  the Strains

 IAA production of  the strains is shown in 
Table 3. The amount of  IAA produced varied 
depending on strains. The highest production was 
achieved by Azospirillum sp. CSC P8 and 
Azospirillum sp. CSC P7. The lowest IAA 
production was detected in Achromobacter spanius   
CSC P4.

Effect of  Bacterial Inoculation on the Rice

 During the 7-day germination assay with 0.4% 
NaCl, the effect of  bacterial inoculation varied 
depending on the strains (Table 4). The best 
growth was obtained by the mixture of  strains on 
INPARA-3, with 7.46 cm and 6.5 cm in shoot and 
root length, respectively. Medium level effect was 
observed in Burkholderia cepacia-complex, Bacillus 
cereus-complex, Pseudomonas sp., Azospirillum sp. 
and Azotobacter sp. However, inoculation of  
Burkholderia cenocepacia, Achromobacter spanius, 
Rhizobium sp., Burkholderia anthina and Rhizobium 
leguminosarum had no effect on shoot and root 
length. Cultivars INPARA-6 and INPARI-13 
could not grow without any inoculant (control) or 
with five single-strain-inoculants.
 In the 45-day growth assay (Table 5), the 
growth of  rice cultivar INPARA-3  under saline 

Burkholderia cepacia-complex
Burkholderia cenocepacia
Bacillus cereus-complex
Achromobacter spanius
Bacillus cereus-complex
Pseudomonas sp.
Azospirillum sp.
Azospirillum sp.
Rhizobium sp.
Azotobacter sp.
Azotobacter sp.
Burkholderia anthina 
Rhizobium sp.
Pseudomonas sp.
Rhizobium leguminosarum
Azospirillum sp.
Bacillus cereus-complex
Azotobacter sp.
Pseudomonas sp.
Azospirillum sp.

Table 3   Ca (PO ) solubilization ability, PMEase activity and IAA production of  the strains3 4 2 

  Isolate  
   code 

 
Taxon  

Phosphate  
Solubilization  

(mg/L)*  

PMEase  
(Unit)*  

IAA  
Production  

(mg/L)*  

CSC P1  
CSC P2  
CSC P3  
CSC P4  
CSC P5  
CSC P6  
CSC P7  
CSC P8  
CSC P9  
CSC P10  
CSC P11  
CSC P12  
CSC N1  
CSC N2  
CSC N3  
CSC N7

 
CSC N8

 
CSC N9

 
CSCN10

 
CSCN11

 

 

8.72 ± 0.89  
1.06 ± 0.16  
10.54 ± 0.16  
0.30 ± 0.68  
1.51 ± 0.11  
11.26 ± 0.58  
7.39 ± 0.42  
6.68 ± 0.37  
2.28 ± 0.63  
5.71 ± 0.53  
1.57 ± 0.95  
0.47 ± 0.47  
1.18 ± 0.05  
11.39 ± 0.53  
4.94 ± 0.32  
2.00 ± 0.32

 
0.89 ± 0.95

 
0.83 ± 0.89

 
10.08 ± 0.26

 
1.86 ± 0.47

0.63 ± 0.71  
0.13 ± 0.52  
0.82 ± 0.85  
0.01 ± 0.04  
0.10 ± 0.86  
0.75 ± 0.26  
0.60 ± 0.86  
0.68 ± 0.10  
0.51 ± 0.70  
1.27 ± 0.68  
0.49 ± 0.67  
0.10 ± 0.12  
2.01 ± 0.34  
2.22 ± 0.93  
0.31 ± 0.27  
0.47 ± 0.03

 
0.12 ± 0.88

 
0.45 ± 0.09

 
0.85 ± 0.89

 
0.14 ± 0.59

8.67 ± 0.92  
2.63 ± 0.16  
8.16 ± 0.90  
1.94 ± 0.21  
5.46 ± 0.58  
8.27 ± 0.67  
9.45 ± 0.06  
9.56 ± 0.16  
6.08 ± 0.42  
8.75 ± 0.98  
6.21 ± 0.32  
2.13 ± 0.16  
3.82 ± 0.89  
8.16 ± 0.90  
8.61 ± 0.10  
7.61 ± 0.39

 
2.73 ± 0.68

 
8.39 ± 0.06

 
8.33 ± 0.84

 
8.09 ± 0.22

    
Note: Values represent mean±standard deviation (n = 3)

119

 
 Promoting rice growth using rhizosphere – Widawati  and Sudiana



Table  4 The effect of  bacterial inoculants on root and shoot length of  rice (three cultivars) at the stage of  seed germination

Isolate code              Taxon  Rice  cultivar  
Shoot length 
   (cm)*  

Root length  
    (cm)*  

Control 
 
 
 
CSC P1 
 
  
CSC P2 
 

  
CSC P3 
 
  
CSC P4 
 

  
CSC P6 
 

  
CSC P8

 
 

  
CSC N1

 
 

  
CSC N9

 
 

  CSC N12
 

 

  CSC N3
 

 

  Mix
 

 

(Control: no inoculation)  
 
 
 
Burkholderia cepacia-complex   
 
  
Burkholderia cenocepacia   
 

  
Bacillus cereus-complex   
 
  
Achromobacter spanius   
 

  
Pseudomonas  sp.  
 

  
Azospirillum

 
sp.

 
 

  
Rhizobium

 
sp.

 
 

  
Azotobacter

 
sp.

 
 

  Burkholderia anthina
  

 

  Rhizobium leguminosarum 
 

 

  Mixture of  strain
 

 

INPARA -3  
INPARI -13  
INPARA -6  
 

INPARA -3  
INPARI -13  
INPARA -6   
INPARA -3  
INPARI -13  
INPARA -6   
INPARA -3  
INPARI -13  
INPARA -6   
INPARA -3  
INPARI -13  
INPARA -6

  
INPARA -3  
INPARI -13  
INPARA -6

  
INPARA -3

 
INPARI -13

 
INPARA -6

  
INPARA -3

 
INPARI -13

 
INPARA -6

  
INPARA -3

 
INPARI -13

 
INPARA -6

  INPARA -3
 INPARI -13
 INPARA -6
  INPARA -3
 INPARI -13
 INPARA -6
  INPARA -3
 INPARI -13
 INPARA -6

4.03 a  
dead  
dead  
 

5.55 de  
4.23 ab  
4.37 ab   
4.16 ab  
dead  
dead   
5.54 de  
4.51 abcd  
4.59 abcd   
4.09 a  
dead  
dead

  
5.58 de  
4.55 abcd  
4.79 abcd

  
6.10 e

 
4.80 abcd

 
4.94 abcd

  
4.30 ab

 
dead

 
dead

  
5.56 de

 
4.82 abcd

 
4.31 ab

  4.03 a
 dead

 dead
  4.34
 dead
 dead
  7.46 f
 4.98 abcd

 4.96 abcd

0.51 a  
dead  
dead  

 
4.43 ghi  
2,00 bcde  
1.39 abc   
1.47 abcd  
dead  
dead   
4.24 ghi  
2.99 defg  
2.04 bcde   
2.90 cdefg  
dead  
dead

  
4.70 hi  
3.41 efgh  
3.22 efgh

  
5.00 i

 
3.65 fghi

 
3.11 efgh

  
3.95 fghi

 
dead

 
dead

  
4.44 ghi

 
2.83 cdefg

 
2.39 bcdef

  1.25 ab
 dead

 dead
  3.62
 dead
 dead
  6.50 j
 4.01 ghi

 4.13 ghi

Note: Values followed  by the same letter in the same column are not significantly different  based on Duncan's multiple range test at 
5% level

condition was less than that under no saline 
condition.  Under saline condition, rice cultivar 
INPARA-3 inoculated with the mixture of  strains 
showed the best growth with 29 cm in plant height 
and 5.5 cm in root length. As a single isolate 
inoculation, Pseudomonas sp. CSC N6 showed the 
best effect.
 Twenty strains with Ca-P solubilizing, 
extracellular PMEase producing and IAA 
producing abilities were successfully obtained, 
with an exception of  A. spanius CSC P4 that did 

not show clear PMEase activity. These strains did 
not lean to a specific taxonomic lineage and 
composed of  members of  the phyla Proteobacteria 
(the classes Alphaproteobacteria, Betaproteobacteria 
and Gammaproteobacteria) and Fermicutes. The fact 
that the strains were isolated as nitrogen-fixing 
bacteria including Ca-P solubilizing members 
indicated that Ca-P solubilizing ability was 
common among bacteria, at least among those 
living in the rhizosphere. It was also possible that 
P M E a s e  a c t iv i t y  wa s  c o m m o n  a m o n g  

120

BIOTROPIA Vol. 23 No. 2, 2016



Table 5 The effect of  bacterial inoculants on the growth of  rice cultivar INPARA-3, in sterile sand media under saline and 
non-saline conditions  45 days after planting

Isolate 
code 

            Inoculant  Salinity 
condition  

Total dry 
biomass  

    (g)  

Plant  
height  
(cm)  

Root  
length  
(cm)  

–  
 

CSC P1  
 

CSC P2  
 

CSC P3  
 

CSCP4  
 

CSC P6  
 

CSC P8
 

 
CSC N1

 
 

CSC N9
 

 
CSCN12

 
 

CSC N3
 

 –

No bacteria  
 
Burkholderia cepacia-complex   
 
Burkholderia cenocepacia   
 
Bacillus cereus-complex   
 
Achromobacter spanius   
 
Pseudomonas  sp.  
 
Azospirillum

 
sp.

 
 
Rhizobium

 
sp.

 
 
Azotobacter

 
sp.

 
 
Burkholderia anthina

  
 
Rhizobium leguminosarum 

 
  Mixture of  all the isolates

 

Non-saline  
Saline  
Non-saline  
Saline  
Non-saline  
Saline  
Non-saline  
Saline  
Non-saline  
Saline  
Non-saline  
Saline  
Non-saline

 
Saline

 
Non-saline

 
Saline

 
Non-saline

 
Saline

 
Non-saline

 
Saline

 
Non-saline

 Saline
 Non-saline

 Saline
 

0.02  a  
0.01  a  
0.09  cde  
0.07  abcd  
0.06  abcd  
0.04  abc  
0.09  cde  
0.08  bcd

 
0.04  abc

 
0.02  a

 
0.13  e

 
0.09  cde

 
0.09  cde

 
0.07  abcd

 
0.07  abcd

 0.04  abc
 0.08  bcd
 0.07  abcd
 0.06  abc

 0.02  a
 0.05  abc

 0.02  abc
 0.14  e

 0.12  de

14.25  ab  
13.00  a  
27.50  ghi  
26.25  ghi  
26.00  fgh  
22.75  cdefg  
27.30  ghi  
26.00  fgh

 
25.50  efgh

 
17.00  abc

 
29.50  hi

 
26.88  ghi

 
27.50  ghi

 
26.25  ghi

 
24.50  defgh

 20.75  cde
 26.50  ghi
 26.25  ghi
 21.00  cdef
 17.15  abc

 23.00  defg
 19.00  bcd

 31.00  i
 29.00  hi

1.50  ab  
1.00  a  
5.00  jk  
4.00  hij  
3.50  fgh  
2.65  de  
4.50 ij  
3.75  ghi

 
3.50  fgh

 
3.00  ef

 
6.15  l

 
5.00  jk 

 
4.25  ij

 
4.00  hij

 
3.25  fg

 2.25  cd
 4.50  ij

 3.75  ghi
 3.50  fgh
 2.25  cd

 3.25  fg
 2.00  bc
 6.50 l

 5.50  k

rhizosphere bacteria. Interestingly, the strains with 
higher Ca-P solubilizing ability generally showed 
higher PMEase activity. IAA production was also 
reported as common among soil bacteria (Hasan 
2002; Xin et al. 2009), which was supported by the 
present study.
 Saline environment inhibits rice growth. This is 
because rice is a saline sensitive plant (Ashraf  & 

+ +
Harris 2004); also because the uptake of  Ca , K  2
and inorganic N and  P are disrupted under high 
Na concentration (Ashraf  & Harris 2004). In 
addition, the salinity also affected soil enzyme 
activities (Siddikee et al. 2011), which could 
indirectly affect rice growth. The inoculation of  
the selected strains affected germination of  rice 
under saline condition (Table 4). The inoculation 
of  mixture of  the strains resulted in the best rice 
growth. As single strain, Azospirillum sp. CSC P8 
and Pseudomonas sp. CSC P6 provided the best and 
the second best rice growth support, respectively. 
It was possible that the inoculants supported the 
growth of  rice by supplying phosphate and IAA. 

Azospirillum sp. is a potential nitrogen fixer and the 
mixture of  the strains also includes nitrogen 
fixers. Therefore, it was possible that nitrogen 
fixed by the inoculants might also promote rice 
growth. Rice cultivars INPARI-13 and INPARA-
6 did not grow without the existence of  
inoculants. The present study showed that the 
inoculation of  five strains and the mixture of  
strains enabled these cultivars to grow. This 
indicated that the inoculation not only promoted 
rice growth by supplying nutrient and IAA, but 
also enhanced rice tolerance towards salinity. It 
was interesting that some strains isolated from 
peanut rhizosphere could promote and support 
rice growth.
 Among the rice cultivars tested in the present 
study, only INPARA-3 grew in saline condition 
without inoculation of  the strains. Therefore, 
INPARA-3 was then subjected to rice growth 
assay with 0.4% NaCl. In this assay, the 
inoculation of   the mixture of  strains, Pseudomonas 
sp. CSC P6 and Azospirillum sp. CSC P8 provided 

Notes: Values followed  by the same letter in the same column are not significantly different by Duncan's multiple range test at 5% level.
 Non-saline condition = 360 mL freshwater  in 0.5 gallon pots. 
 Saline condition = 360 mL freshwater in 0.5 gallon pots was added with 0.4% NaCl (6 g NaCl).

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 Promoting rice growth using rhizosphere – Widawati  and Sudiana



the best, the second best, and the third best rice 
growth support, respectively. These inoculants 
may be promising as biofertilizer to support rice 
growth in saline paddy fields.

  
CONCLUSIONS

 Twenty strains of  rhizosphere bacteria with 
Ca-P solubilizing ability and IAA production were 
successfully obtained in this study. Those bacteria 
mainly belonged to Burkholderia cepacia-complex,  
Burkholderia anthina, Burkholderia cenocepacia,  
Bacillus cereus-complex, Achromobacter spanius,  
Azospirillum sp.,  Azotobacter sp.,  Rhizobium 
leguminosarum,  Rhizobium sp. and Pseudomonas sp.
 Potential nitrogen fixing bacteria are 
Azospirillum sp., Azotobacter sp., Rhizobium 
leguminosarum  and Rhizobium sp. Most strains had 
PMEase activity. Some strains showed growth-
promoting effect on rice under saline conditions 
and produced plant growth hormone. These 
strains could be candidates for biofertilizer for rice 
in saline paddy field.  It is also important to 
consider using combination of   inoculants and  
rice cultivars to obtain maximum result.

ACKNOWLEDGEMENTS

 This work was funded by JICA-JST SATREP 
2011-2016. We thank Dr Shigeto Otsuka from 
University of  Tokyo for research guidance.  We 
are grateful to Senlie Oktavitana, Anis Mutirani 
and Rinatu Siwi for their assistance in laboratory 
works.

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