id	sid	tid	token	lemma	pos
caryologia-232	1	1	caryologia	caryologia	ADJ
caryologia-232	1	2	.	.	PUNCT
caryologia-232	2	1	international	international	ADJ
caryologia-232	2	2	journal	journal	PROPN
caryologia-232	2	3	of	of	ADP
caryologia-232	2	4	cytology	cytology	PROPN
caryologia-232	2	5	,	,	PUNCT
caryologia-232	2	6	cytosystematics	cytosystematic	NOUN
caryologia-232	2	7	and	and	CCONJ
caryologia-232	2	8	cytogenetics	cytogenetic	NOUN
caryologia-232	2	9	72(2	72(2	NUM
caryologia-232	2	10	):	):	PUNCT
caryologia-232	2	11	69	69	NUM
caryologia-232	2	12	-	-	SYM
caryologia-232	2	13	79	79	NUM
caryologia-232	2	14	,	,	PUNCT
caryologia-232	2	15	2019	2019	NUM
caryologia-232	2	16	firenze	firenze	PROPN
caryologia-232	2	17	university	university	NOUN
caryologia-232	2	18	press	press	NOUN
caryologia-232	2	19	www.fupress.com/caryologiacaryologia	www.fupress.com/caryologiacaryologia	NUM
caryologia-232	2	20	international	international	ADJ
caryologia-232	2	21	journal	journal	NOUN
caryologia-232	2	22	of	of	ADP
caryologia-232	2	23	cytology	cytology	PROPN
caryologia-232	2	24	,	,	PUNCT
caryologia-232	2	25	cytosystematics	cytosystematic	NOUN
caryologia-232	2	26	and	and	CCONJ
caryologia-232	2	27	cytogenetics	cytogenetic	NOUN
caryologia-232	2	28	issn	issn	VERB
caryologia-232	2	29	0008	0008	NUM
caryologia-232	2	30	-	-	SYM
caryologia-232	2	31	7114	7114	NUM
caryologia-232	2	32	(	(	PUNCT
caryologia-232	2	33	print	print	NOUN
caryologia-232	2	34	)	)	PUNCT
caryologia-232	2	35	|	|	ADV
caryologia-232	2	36	issn	issn	VERB
caryologia-232	2	37	2165	2165	NUM
caryologia-232	2	38	-	-	SYM
caryologia-232	2	39	5391	5391	NUM
caryologia-232	2	40	(	(	PUNCT
caryologia-232	2	41	online	online	NOUN
caryologia-232	2	42	)	)	PUNCT
caryologia-232	2	43	|	|	ADV
caryologia-232	2	44	doi	doi	NOUN
caryologia-232	2	45	:	:	PUNCT
caryologia-232	2	46	10.13128	10.13128	NUM
caryologia-232	2	47	/	/	SYM
caryologia-232	2	48	cayologia-232	cayologia-232	NOUN
caryologia-232	2	49	citation	citation	NOUN
caryologia-232	2	50	:	:	PUNCT
caryologia-232	2	51	a.	a.	NOUN
caryologia-232	2	52	vangelisti	vangelisti	PROPN
caryologia-232	2	53	,	,	PUNCT
caryologia-232	2	54	g.	g.	PROPN
caryologia-232	2	55	usai	usai	PROPN
caryologia-232	2	56	,	,	PUNCT
caryologia-232	2	57	f.	f.	PROPN
caryologia-232	2	58	mascagni	mascagni	PROPN
caryologia-232	2	59	,	,	PUNCT
caryologia-232	2	60	l.	l.	PROPN
caryologia-232	2	61	natali	natali	PROPN
caryologia-232	2	62	,	,	PUNCT
caryologia-232	2	63	t.	t.	PROPN
caryologia-232	2	64	giordani	giordani	PROPN
caryologia-232	2	65	,	,	PUNCT
caryologia-232	2	66	a.	a.	NOUN
caryologia-232	2	67	cavallini	cavallini	PROPN
caryologia-232	2	68	(	(	PUNCT
caryologia-232	2	69	2019	2019	NUM
caryologia-232	2	70	)	)	PUNCT
caryologia-232	2	71	a	a	DET
caryologia-232	2	72	whole	whole	ADJ
caryologia-232	2	73	genome	genome	NOUN
caryologia-232	2	74	analysis	analysis	NOUN
caryologia-232	2	75	of	of	ADP
caryologia-232	2	76	long	long	ADJ
caryologia-232	2	77	-	-	PUNCT
caryologia-232	2	78	terminal	terminal	ADJ
caryologia-232	2	79	-	-	PUNCT
caryologia-232	2	80	repeat	repeat	NOUN
caryologia-232	2	81	retrotransposon	retrotransposon	NOUN
caryologia-232	2	82	transcription	transcription	NOUN
caryologia-232	2	83	in	in	ADP
caryologia-232	2	84	leaves	leave	NOUN
caryologia-232	2	85	of	of	ADP
caryologia-232	2	86	populus	populus	ADJ
caryologia-232	2	87	trichocarpa	trichocarpa	NOUN
caryologia-232	2	88	l.	l.	PROPN
caryologia-232	2	89	subjected	subject	VERB
caryologia-232	2	90	to	to	ADP
caryologia-232	2	91	different	different	ADJ
caryologia-232	2	92	stresses	stress	NOUN
caryologia-232	2	93	.	.	PUNCT
caryologia-232	3	1	caryologia	caryologia	ADJ
caryologia-232	3	2	72(2	72(2	NOUN
caryologia-232	3	3	):	):	PUNCT
caryologia-232	3	4	69	69	NUM
caryologia-232	3	5	-	-	SYM
caryologia-232	3	6	79	79	NUM
caryologia-232	3	7	.	.	PUNCT
caryologia-232	4	1	doi	doi	NOUN
caryologia-232	4	2	:	:	PUNCT
caryologia-232	4	3	10.13128	10.13128	NUM
caryologia-232	4	4	/	/	SYM
caryologia-232	4	5	cayologia-232	cayologia-232	NOUN
caryologia-232	4	6	published	publish	VERB
caryologia-232	4	7	:	:	PUNCT
caryologia-232	4	8	december	december	PROPN
caryologia-232	4	9	5	5	NUM
caryologia-232	4	10	,	,	PUNCT
caryologia-232	4	11	2019	2019	NUM
caryologia-232	4	12	copyright	copyright	NOUN
caryologia-232	4	13	:	:	PUNCT
caryologia-232	4	14	©	©	PROPN
caryologia-232	4	15	2019	2019	NUM
caryologia-232	4	16	a.	a.	NOUN
caryologia-232	4	17	vangelisti	vangelisti	PROPN
caryologia-232	4	18	,	,	PUNCT
caryologia-232	4	19	g.	g.	PROPN
caryologia-232	4	20	usai	usai	PROPN
caryologia-232	4	21	,	,	PUNCT
caryologia-232	4	22	f.	f.	PROPN
caryologia-232	4	23	mascagni	mascagni	PROPN
caryologia-232	4	24	,	,	PUNCT
caryologia-232	4	25	l.	l.	PROPN
caryologia-232	4	26	natali	natali	PROPN
caryologia-232	4	27	,	,	PUNCT
caryologia-232	4	28	t.	t.	PROPN
caryologia-232	4	29	giordani	giordani	PROPN
caryologia-232	4	30	,	,	PUNCT
caryologia-232	4	31	a.	a.	NOUN
caryologia-232	4	32	cavallini	cavallini	PROPN
caryologia-232	4	33	.	.	PUNCT
caryologia-232	5	1	this	this	PRON
caryologia-232	5	2	is	be	AUX
caryologia-232	5	3	an	an	DET
caryologia-232	5	4	open	open	ADJ
caryologia-232	5	5	access	access	NOUN
caryologia-232	5	6	,	,	PUNCT
caryologia-232	5	7	peer	peer	NOUN
caryologia-232	5	8	-	-	PUNCT
caryologia-232	5	9	reviewed	review	VERB
caryologia-232	5	10	article	article	NOUN
caryologia-232	5	11	published	publish	VERB
caryologia-232	5	12	by	by	ADP
caryologia-232	5	13	firenze	firenze	PROPN
caryologia-232	5	14	university	university	PROPN
caryologia-232	5	15	press	press	NOUN
caryologia-232	5	16	(	(	PUNCT
caryologia-232	5	17	http://www	http://www	PROPN
caryologia-232	5	18	.	.	PROPN
caryologia-232	5	19	fupress.com/caryologia	fupress.com/caryologia	NUM
caryologia-232	5	20	)	)	PUNCT
caryologia-232	5	21	and	and	CCONJ
caryologia-232	5	22	distributed	distribute	VERB
caryologia-232	5	23	under	under	ADP
caryologia-232	5	24	the	the	DET
caryologia-232	5	25	terms	term	NOUN
caryologia-232	5	26	of	of	ADP
caryologia-232	5	27	the	the	DET
caryologia-232	5	28	creative	creative	ADJ
caryologia-232	5	29	commons	common	NOUN
caryologia-232	5	30	attribution	attribution	NOUN
caryologia-232	5	31	license	license	NOUN
caryologia-232	5	32	,	,	PUNCT
caryologia-232	5	33	which	which	PRON
caryologia-232	5	34	permits	permit	VERB
caryologia-232	5	35	unrestricted	unrestricted	ADJ
caryologia-232	5	36	use	use	NOUN
caryologia-232	5	37	,	,	PUNCT
caryologia-232	5	38	distribution	distribution	NOUN
caryologia-232	5	39	,	,	PUNCT
caryologia-232	5	40	and	and	CCONJ
caryologia-232	5	41	reproduction	reproduction	NOUN
caryologia-232	5	42	in	in	ADP
caryologia-232	5	43	any	any	DET
caryologia-232	5	44	medium	medium	NOUN
caryologia-232	5	45	,	,	PUNCT
caryologia-232	5	46	provided	provide	VERB
caryologia-232	5	47	the	the	DET
caryologia-232	5	48	original	original	ADJ
caryologia-232	5	49	author	author	NOUN
caryologia-232	5	50	and	and	CCONJ
caryologia-232	5	51	source	source	NOUN
caryologia-232	5	52	are	be	AUX
caryologia-232	5	53	credited	credit	VERB
caryologia-232	5	54	.	.	PUNCT
caryologia-232	6	1	data	datum	NOUN
caryologia-232	6	2	availability	availability	NOUN
caryologia-232	6	3	statement	statement	NOUN
caryologia-232	6	4	:	:	PUNCT
caryologia-232	6	5	all	all	DET
caryologia-232	6	6	relevant	relevant	ADJ
caryologia-232	6	7	data	datum	NOUN
caryologia-232	6	8	are	be	AUX
caryologia-232	6	9	within	within	ADP
caryologia-232	6	10	the	the	DET
caryologia-232	6	11	paper	paper	NOUN
caryologia-232	6	12	and	and	CCONJ
caryologia-232	6	13	its	its	PRON
caryologia-232	6	14	supporting	support	VERB
caryologia-232	6	15	information	information	NOUN
caryologia-232	6	16	files	file	NOUN
caryologia-232	6	17	.	.	PUNCT
caryologia-232	7	1	competing	compete	VERB
caryologia-232	7	2	interests	interest	NOUN
caryologia-232	7	3	:	:	PUNCT
caryologia-232	7	4	the	the	DET
caryologia-232	7	5	author(s	author(s	PROPN
caryologia-232	7	6	)	)	PUNCT
caryologia-232	7	7	declare(s	declare(s	PROPN
caryologia-232	7	8	)	)	PUNCT
caryologia-232	7	9	no	no	DET
caryologia-232	7	10	conflict	conflict	NOUN
caryologia-232	7	11	of	of	ADP
caryologia-232	7	12	interest	interest	NOUN
caryologia-232	7	13	.	.	PUNCT
caryologia-232	8	1	a	a	DET
caryologia-232	8	2	whole	whole	ADJ
caryologia-232	8	3	genome	genome	NOUN
caryologia-232	8	4	analysis	analysis	NOUN
caryologia-232	8	5	of	of	ADP
caryologia-232	8	6	long	long	ADJ
caryologia-232	8	7	-	-	PUNCT
caryologia-232	8	8	terminalrepeat	terminalrepeat	NOUN
caryologia-232	8	9	retrotransposon	retrotransposon	NOUN
caryologia-232	8	10	transcription	transcription	NOUN
caryologia-232	8	11	in	in	ADP
caryologia-232	8	12	leaves	leave	NOUN
caryologia-232	8	13	of	of	ADP
caryologia-232	8	14	populus	populus	ADJ
caryologia-232	8	15	trichocarpa	trichocarpa	NOUN
caryologia-232	8	16	l.	l.	PROPN
caryologia-232	8	17	subjected	subject	VERB
caryologia-232	8	18	to	to	ADP
caryologia-232	8	19	different	different	ADJ
caryologia-232	8	20	stresses	stress	NOUN
caryologia-232	8	21	alberto	alberto	PROPN
caryologia-232	8	22	vangelisti	vangelisti	PROPN
caryologia-232	8	23	#	#	SYM
caryologia-232	8	24	,	,	PUNCT
caryologia-232	8	25	gabriele	gabriele	PROPN
caryologia-232	8	26	usai	usai	PROPN
caryologia-232	8	27	#	#	PROPN
caryologia-232	8	28	,	,	PUNCT
caryologia-232	8	29	flavia	flavia	PROPN
caryologia-232	8	30	mascagni	mascagni	PROPN
caryologia-232	8	31	#	#	PROPN
caryologia-232	8	32	,	,	PUNCT
caryologia-232	8	33	lucia	lucia	PROPN
caryologia-232	8	34	natali	natali	PROPN
caryologia-232	8	35	,	,	PUNCT
caryologia-232	8	36	tommaso	tommaso	PROPN
caryologia-232	8	37	giordani	giordani	PROPN
caryologia-232	8	38	*	*	PROPN
caryologia-232	8	39	,	,	PUNCT
caryologia-232	8	40	andrea	andrea	PROPN
caryologia-232	8	41	cavallini	cavallini	PROPN
caryologia-232	8	42	department	department	PROPN
caryologia-232	8	43	of	of	ADP
caryologia-232	8	44	agriculture	agriculture	PROPN
caryologia-232	8	45	,	,	PUNCT
caryologia-232	8	46	food	food	NOUN
caryologia-232	8	47	and	and	CCONJ
caryologia-232	8	48	environment	environment	NOUN
caryologia-232	8	49	,	,	PUNCT
caryologia-232	8	50	university	university	PROPN
caryologia-232	8	51	of	of	ADP
caryologia-232	8	52	pisa	pisa	PROPN
caryologia-232	8	53	,	,	PUNCT
caryologia-232	8	54	via	via	ADP
caryologia-232	8	55	del	del	PROPN
caryologia-232	8	56	borghetto	borghetto	NOUN
caryologia-232	8	57	80	80	NUM
caryologia-232	8	58	,	,	PUNCT
caryologia-232	8	59	i-56124	i-56124	PROPN
caryologia-232	8	60	pisa	pisa	PROPN
caryologia-232	8	61	,	,	PUNCT
caryologia-232	8	62	italy	italy	PROPN
caryologia-232	8	63	#	#	PROPN
caryologia-232	8	64	these	these	DET
caryologia-232	8	65	authors	author	NOUN
caryologia-232	8	66	contributed	contribute	VERB
caryologia-232	8	67	equally	equally	ADV
caryologia-232	8	68	to	to	ADP
caryologia-232	8	69	this	this	DET
caryologia-232	8	70	study	study	NOUN
caryologia-232	8	71	*	*	PUNCT
caryologia-232	8	72	corresponding	correspond	VERB
caryologia-232	8	73	author	author	NOUN
caryologia-232	8	74	:	:	PUNCT
caryologia-232	8	75	tommaso.giordani@unipi.it	tommaso.giordani@unipi.it	PROPN
caryologia-232	8	76	abstract	abstract	ADJ
caryologia-232	8	77	.	.	PUNCT
caryologia-232	9	1	long	long	ADJ
caryologia-232	9	2	terminal	terminal	ADJ
caryologia-232	9	3	repeat	repeat	NOUN
caryologia-232	9	4	retrotransposons	retrotransposon	NOUN
caryologia-232	9	5	have	have	VERB
caryologia-232	9	6	a	a	DET
caryologia-232	9	7	main	main	ADJ
caryologia-232	9	8	role	role	NOUN
caryologia-232	9	9	in	in	ADP
caryologia-232	9	10	shaping	shape	VERB
caryologia-232	9	11	the	the	DET
caryologia-232	9	12	structure	structure	NOUN
caryologia-232	9	13	of	of	ADP
caryologia-232	9	14	plant	plant	NOUN
caryologia-232	9	15	genomes	genome	NOUN
caryologia-232	9	16	.	.	PUNCT
caryologia-232	10	1	we	we	PRON
caryologia-232	10	2	used	use	VERB
caryologia-232	10	3	available	available	ADJ
caryologia-232	10	4	genomic	genomic	ADJ
caryologia-232	10	5	resources	resource	NOUN
caryologia-232	10	6	to	to	PART
caryologia-232	10	7	study	study	VERB
caryologia-232	10	8	as	as	SCONJ
caryologia-232	10	9	several	several	ADJ
caryologia-232	10	10	factors	factor	NOUN
caryologia-232	10	11	affect	affect	VERB
caryologia-232	10	12	the	the	DET
caryologia-232	10	13	expression	expression	NOUN
caryologia-232	10	14	of	of	ADP
caryologia-232	10	15	long	long	ADJ
caryologia-232	10	16	terminal	terminal	ADJ
caryologia-232	10	17	repeat	repeat	NOUN
caryologia-232	10	18	retrotransposons	retrotransposon	NOUN
caryologia-232	10	19	in	in	ADP
caryologia-232	10	20	populus	populus	ADJ
caryologia-232	10	21	trichocarpa	trichocarpa	NOUN
caryologia-232	10	22	.	.	PUNCT
caryologia-232	11	1	such	such	ADJ
caryologia-232	11	2	factors	factor	NOUN
caryologia-232	11	3	included	include	VERB
caryologia-232	11	4	redundancy	redundancy	NOUN
caryologia-232	11	5	of	of	ADP
caryologia-232	11	6	a	a	DET
caryologia-232	11	7	retrotransposon	retrotransposon	NOUN
caryologia-232	11	8	in	in	ADP
caryologia-232	11	9	the	the	DET
caryologia-232	11	10	genome	genome	NOUN
caryologia-232	11	11	,	,	PUNCT
caryologia-232	11	12	chromosomal	chromosomal	ADJ
caryologia-232	11	13	localization	localization	NOUN
caryologia-232	11	14	,	,	PUNCT
caryologia-232	11	15	“	"	PUNCT
caryologia-232	11	16	genotype	genotype	NOUN
caryologia-232	11	17	”	"	PUNCT
caryologia-232	11	18	of	of	ADP
caryologia-232	11	19	the	the	DET
caryologia-232	11	20	retrotransposon	retrotransposon	NOUN
caryologia-232	11	21	,	,	PUNCT
caryologia-232	11	22	and	and	CCONJ
caryologia-232	11	23	changes	change	NOUN
caryologia-232	11	24	in	in	ADP
caryologia-232	11	25	the	the	DET
caryologia-232	11	26	environment	environment	NOUN
caryologia-232	11	27	.	.	PUNCT
caryologia-232	12	1	overall	overall	ADV
caryologia-232	12	2	,	,	PUNCT
caryologia-232	12	3	we	we	PRON
caryologia-232	12	4	identified	identify	VERB
caryologia-232	12	5	and	and	CCONJ
caryologia-232	12	6	annotated	annotate	VERB
caryologia-232	12	7	828	828	NUM
caryologia-232	12	8	full	full	ADJ
caryologia-232	12	9	-	-	PUNCT
caryologia-232	12	10	length	length	NOUN
caryologia-232	12	11	retrotransposons	retrotransposon	NOUN
caryologia-232	12	12	,	,	PUNCT
caryologia-232	12	13	and	and	CCONJ
caryologia-232	12	14	analyzed	analyze	VERB
caryologia-232	12	15	their	their	PRON
caryologia-232	12	16	abundance	abundance	NOUN
caryologia-232	12	17	in	in	ADP
caryologia-232	12	18	the	the	DET
caryologia-232	12	19	genome	genome	NOUN
caryologia-232	12	20	.	.	PUNCT
caryologia-232	13	1	then	then	ADV
caryologia-232	13	2	,	,	PUNCT
caryologia-232	13	3	we	we	PRON
caryologia-232	13	4	measured	measure	VERB
caryologia-232	13	5	their	their	PRON
caryologia-232	13	6	expression	expression	NOUN
caryologia-232	13	7	in	in	ADP
caryologia-232	13	8	leaves	leave	NOUN
caryologia-232	13	9	of	of	ADP
caryologia-232	13	10	plants	plant	NOUN
caryologia-232	13	11	subjected	subject	VERB
caryologia-232	13	12	to	to	ADP
caryologia-232	13	13	several	several	ADJ
caryologia-232	13	14	stresses	stress	NOUN
caryologia-232	13	15	(	(	PUNCT
caryologia-232	13	16	drought	drought	NOUN
caryologia-232	13	17	,	,	PUNCT
caryologia-232	13	18	cold	cold	ADJ
caryologia-232	13	19	,	,	PUNCT
caryologia-232	13	20	heat	heat	NOUN
caryologia-232	13	21	,	,	PUNCT
caryologia-232	13	22	and	and	CCONJ
caryologia-232	13	23	salt	salt	NOUN
caryologia-232	13	24	)	)	PUNCT
caryologia-232	13	25	as	as	ADV
caryologia-232	13	26	well	well	ADV
caryologia-232	13	27	as	as	ADP
caryologia-232	13	28	in	in	ADP
caryologia-232	13	29	control	control	NOUN
caryologia-232	13	30	plants	plant	NOUN
caryologia-232	13	31	.	.	PUNCT
caryologia-232	14	1	our	our	PRON
caryologia-232	14	2	analyses	analysis	NOUN
caryologia-232	14	3	showed	show	VERB
caryologia-232	14	4	that	that	SCONJ
caryologia-232	14	5	the	the	DET
caryologia-232	14	6	expression	expression	NOUN
caryologia-232	14	7	of	of	ADP
caryologia-232	14	8	retrotransposons	retrotransposon	NOUN
caryologia-232	14	9	was	be	AUX
caryologia-232	14	10	generally	generally	ADV
caryologia-232	14	11	low	low	ADJ
caryologia-232	14	12	,	,	PUNCT
caryologia-232	14	13	especially	especially	ADV
caryologia-232	14	14	that	that	PRON
caryologia-232	14	15	of	of	ADP
caryologia-232	14	16	abundant	abundant	ADJ
caryologia-232	14	17	elements	element	NOUN
caryologia-232	14	18	.	.	PUNCT
caryologia-232	15	1	the	the	DET
caryologia-232	15	2	transcription	transcription	NOUN
caryologia-232	15	3	of	of	ADP
caryologia-232	15	4	an	an	DET
caryologia-232	15	5	element	element	NOUN
caryologia-232	15	6	was	be	AUX
caryologia-232	15	7	found	find	VERB
caryologia-232	15	8	to	to	PART
caryologia-232	15	9	be	be	AUX
caryologia-232	15	10	only	only	ADV
caryologia-232	15	11	slightly	slightly	ADV
caryologia-232	15	12	dependent	dependent	ADJ
caryologia-232	15	13	on	on	ADP
caryologia-232	15	14	its	its	PRON
caryologia-232	15	15	chromosomal	chromosomal	ADJ
caryologia-232	15	16	localization	localization	NOUN
caryologia-232	15	17	,	,	PUNCT
caryologia-232	15	18	rather	rather	ADV
caryologia-232	15	19	it	it	PRON
caryologia-232	15	20	depended	depend	VERB
caryologia-232	15	21	on	on	ADP
caryologia-232	15	22	the	the	DET
caryologia-232	15	23	superfamily	superfamily	NOUN
caryologia-232	15	24	and	and	CCONJ
caryologia-232	15	25	the	the	DET
caryologia-232	15	26	lineage	lineage	NOUN
caryologia-232	15	27	to	to	PART
caryologia-232	15	28	which	which	PRON
caryologia-232	15	29	the	the	DET
caryologia-232	15	30	retrotransposon	retrotransposon	NOUN
caryologia-232	15	31	belonged	belong	VERB
caryologia-232	15	32	.	.	PUNCT
caryologia-232	16	1	finally	finally	ADV
caryologia-232	16	2	,	,	PUNCT
caryologia-232	16	3	some	some	DET
caryologia-232	16	4	retrotransposons	retrotransposon	NOUN
caryologia-232	16	5	were	be	AUX
caryologia-232	16	6	specifically	specifically	ADV
caryologia-232	16	7	activated	activate	VERB
caryologia-232	16	8	by	by	ADP
caryologia-232	16	9	different	different	ADJ
caryologia-232	16	10	environmental	environmental	ADJ
caryologia-232	16	11	stresses	stress	NOUN
caryologia-232	16	12	.	.	PUNCT
caryologia-232	17	1	keywords	keyword	NOUN
caryologia-232	17	2	.	.	PUNCT
caryologia-232	18	1	ltr	ltr	ADJ
caryologia-232	18	2	-	-	PUNCT
caryologia-232	18	3	retrotransposons	retrotransposon	NOUN
caryologia-232	18	4	,	,	PUNCT
caryologia-232	18	5	retrotransposon	retrotransposon	NOUN
caryologia-232	18	6	expression	expression	NOUN
caryologia-232	18	7	,	,	PUNCT
caryologia-232	18	8	retrotransposon	retrotransposon	PROPN
caryologia-232	18	9	abundance	abundance	PROPN
caryologia-232	18	10	,	,	PUNCT
caryologia-232	18	11	illumina	illumina	PROPN
caryologia-232	18	12	cdna	cdna	PROPN
caryologia-232	18	13	libraries	libraries	PROPN
caryologia-232	18	14	,	,	PUNCT
caryologia-232	18	15	populus	populus	ADJ
caryologia-232	18	16	trichocarpa	trichocarpa	NOUN
caryologia-232	18	17	.	.	PUNCT
caryologia-232	19	1	introduction	introduction	NOUN
caryologia-232	19	2	transposable	transposable	ADJ
caryologia-232	19	3	elements	element	NOUN
caryologia-232	19	4	are	be	AUX
caryologia-232	19	5	mobile	mobile	ADJ
caryologia-232	19	6	dna	dna	PROPN
caryologia-232	19	7	sequences	sequence	NOUN
caryologia-232	19	8	,	,	PUNCT
caryologia-232	19	9	which	which	PRON
caryologia-232	19	10	are	be	AUX
caryologia-232	19	11	abundant	abundant	ADJ
caryologia-232	19	12	and	and	CCONJ
caryologia-232	19	13	widespread	widespread	ADJ
caryologia-232	19	14	in	in	ADP
caryologia-232	19	15	all	all	DET
caryologia-232	19	16	eukaryotic	eukaryotic	ADJ
caryologia-232	19	17	genomes	genome	NOUN
caryologia-232	19	18	.	.	PUNCT
caryologia-232	20	1	they	they	PRON
caryologia-232	20	2	can	can	AUX
caryologia-232	20	3	change	change	VERB
caryologia-232	20	4	their	their	PRON
caryologia-232	20	5	position	position	NOUN
caryologia-232	20	6	on	on	ADP
caryologia-232	20	7	chromosomes	chromosome	NOUN
caryologia-232	20	8	by	by	ADP
caryologia-232	20	9	a	a	DET
caryologia-232	20	10	mechanism	mechanism	NOUN
caryologia-232	20	11	,	,	PUNCT
caryologia-232	20	12	called	call	VERB
caryologia-232	20	13	transposition	transposition	NOUN
caryologia-232	20	14	,	,	PUNCT
caryologia-232	20	15	driven	drive	VERB
caryologia-232	20	16	by	by	ADP
caryologia-232	20	17	enzymes	enzyme	NOUN
caryologia-232	20	18	encoded	encode	VERB
caryologia-232	20	19	by	by	ADP
caryologia-232	20	20	the	the	DET
caryologia-232	20	21	element	element	NOUN
caryologia-232	20	22	itself	itself	PRON
caryologia-232	20	23	.	.	PUNCT
caryologia-232	21	1	transposable	transposable	ADJ
caryologia-232	21	2	elements	element	NOUN
caryologia-232	21	3	can	can	AUX
caryologia-232	21	4	be	be	AUX
caryologia-232	21	5	divided	divide	VERB
caryologia-232	21	6	between	between	ADP
caryologia-232	21	7	retrotransposons	retrotransposon	NOUN
caryologia-232	21	8	(	(	PUNCT
caryologia-232	21	9	res	re	NOUN
caryologia-232	21	10	,	,	PUNCT
caryologia-232	21	11	class	class	NOUN
caryologia-232	21	12	i	i	PROPN
caryologia-232	21	13	)	)	PUNCT
caryologia-232	21	14	and	and	CCONJ
caryologia-232	21	15	dna	dna	PROPN
caryologia-232	21	16	transposons	transposon	NOUN
caryologia-232	21	17	(	(	PUNCT
caryologia-232	21	18	class	class	NOUN
caryologia-232	21	19	ii	ii	PROPN
caryologia-232	21	20	)	)	PUNCT
caryologia-232	21	21	,	,	PUNCT
caryologia-232	21	22	according	accord	VERB
caryologia-232	21	23	to	to	ADP
caryologia-232	21	24	their	their	PRON
caryologia-232	21	25	transposition	transposition	NOUN
caryologia-232	21	26	mechanism	mechanism	NOUN
caryologia-232	21	27	(	(	PUNCT
caryologia-232	21	28	wicker	wicker	NOUN
caryologia-232	21	29	et	et	PROPN
caryologia-232	21	30	al	al	PROPN
caryologia-232	21	31	.	.	PROPN
caryologia-232	21	32	2007	2007	NUM
caryologia-232	21	33	)	)	PUNCT
caryologia-232	21	34	.	.	PUNCT
caryologia-232	22	1	the	the	DET
caryologia-232	22	2	transposition	transposition	NOUN
caryologia-232	22	3	of	of	ADP
caryologia-232	22	4	res	re	NOUN
caryologia-232	22	5	occurs	occur	VERB
caryologia-232	22	6	through	through	ADP
caryologia-232	22	7	a	a	DET
caryologia-232	22	8	“	"	PUNCT
caryologia-232	22	9	copy	copy	NOUN
caryologia-232	22	10	and	and	CCONJ
caryologia-232	22	11	paste	paste	VERB
caryologia-232	22	12	”	"	PUNCT
caryologia-232	22	13	replicative	replicative	ADJ
caryologia-232	22	14	mechanism	mechanism	NOUN
caryologia-232	22	15	that	that	PRON
caryologia-232	22	16	includes	include	VERB
caryologia-232	22	17	the	the	DET
caryologia-232	22	18	transcription	transcription	NOUN
caryologia-232	22	19	of	of	ADP
caryologia-232	22	20	an	an	DET
caryologia-232	22	21	rna	rna	NOUN
caryologia-232	22	22	intermediate	intermediate	NOUN
caryologia-232	22	23	followed	follow	VERB
caryologia-232	22	24	by	by	ADP
caryologia-232	22	25	its	its	PRON
caryologia-232	22	26	retro	retro	NOUN
caryologia-232	22	27	-	-	PUNCT
caryologia-232	22	28	transcription	transcription	NOUN
caryologia-232	22	29	and	and	CCONJ
caryologia-232	22	30	insertion	insertion	NOUN
caryologia-232	22	31	into	into	ADP
caryologia-232	22	32	the	the	DET
caryologia-232	22	33	genome	genome	NOUN
caryologia-232	22	34	(	(	PUNCT
caryologia-232	22	35	wicker	wicker	NOUN
caryologia-232	22	36	et	et	PROPN
caryologia-232	22	37	al	al	PROPN
caryologia-232	22	38	.	.	PROPN
caryologia-232	22	39	70	70	NUM
caryologia-232	22	40	alberto	alberto	PROPN
caryologia-232	22	41	vangelisti	vangelisti	PROPN
caryologia-232	22	42	et	et	PROPN
caryologia-232	22	43	al	al	PROPN
caryologia-232	22	44	.	.	PROPN
caryologia-232	22	45	2007	2007	NUM
caryologia-232	22	46	)	)	PUNCT
caryologia-232	22	47	.	.	PUNCT
caryologia-232	23	1	this	this	DET
caryologia-232	23	2	transposition	transposition	NOUN
caryologia-232	23	3	mechanism	mechanism	NOUN
caryologia-232	23	4	has	have	AUX
caryologia-232	23	5	allowed	allow	VERB
caryologia-232	23	6	res	re	NOUN
caryologia-232	23	7	to	to	PART
caryologia-232	23	8	become	become	VERB
caryologia-232	23	9	the	the	DET
caryologia-232	23	10	largest	large	ADJ
caryologia-232	23	11	portion	portion	NOUN
caryologia-232	23	12	of	of	ADP
caryologia-232	23	13	most	most	ADJ
caryologia-232	23	14	eukaryotic	eukaryotic	ADJ
caryologia-232	23	15	genomes	genome	NOUN
caryologia-232	23	16	,	,	PUNCT
caryologia-232	23	17	often	often	ADV
caryologia-232	23	18	represented	represent	VERB
caryologia-232	23	19	by	by	ADP
caryologia-232	23	20	many	many	ADJ
caryologia-232	23	21	thousands	thousand	NOUN
caryologia-232	23	22	of	of	ADP
caryologia-232	23	23	copies	copy	NOUN
caryologia-232	23	24	(	(	PUNCT
caryologia-232	23	25	sanmiguel	sanmiguel	NOUN
caryologia-232	23	26	et	et	PROPN
caryologia-232	23	27	al	al	PROPN
caryologia-232	23	28	.	.	PROPN
caryologia-232	23	29	1998	1998	NUM
caryologia-232	23	30	;	;	PUNCT
caryologia-232	23	31	vicient	vicient	NOUN
caryologia-232	23	32	et	et	PROPN
caryologia-232	23	33	al	al	PROPN
caryologia-232	23	34	.	.	PROPN
caryologia-232	23	35	1999	1999	NUM
caryologia-232	23	36	)	)	PUNCT
caryologia-232	23	37	.	.	PUNCT
caryologia-232	24	1	a	a	DET
caryologia-232	24	2	retrotransposon	retrotransposon	NOUN
caryologia-232	24	3	can	can	AUX
caryologia-232	24	4	be	be	AUX
caryologia-232	24	5	classified	classify	VERB
caryologia-232	24	6	as	as	ADP
caryologia-232	24	7	ltror	ltror	NOUN
caryologia-232	24	8	not	not	PART
caryologia-232	24	9	ltr	ltr	NOUN
caryologia-232	24	10	-	-	PUNCT
caryologia-232	24	11	re	re	NOUN
caryologia-232	24	12	,	,	PUNCT
caryologia-232	24	13	according	accord	VERB
caryologia-232	24	14	to	to	ADP
caryologia-232	24	15	the	the	DET
caryologia-232	24	16	presence	presence	NOUN
caryologia-232	24	17	of	of	ADP
caryologia-232	24	18	long	long	ADJ
caryologia-232	24	19	terminal	terminal	ADJ
caryologia-232	24	20	repeats	repeat	NOUN
caryologia-232	24	21	(	(	PUNCT
caryologia-232	24	22	ltrs	ltrs	PROPN
caryologia-232	24	23	)	)	PUNCT
caryologia-232	24	24	at	at	ADP
caryologia-232	24	25	its	its	PRON
caryologia-232	24	26	ends	end	NOUN
caryologia-232	24	27	.	.	PUNCT
caryologia-232	25	1	as	as	ADP
caryologia-232	25	2	for	for	ADP
caryologia-232	25	3	the	the	DET
caryologia-232	25	4	ltr	ltr	NOUN
caryologia-232	25	5	-	-	PUNCT
caryologia-232	25	6	res	re	NOUN
caryologia-232	25	7	,	,	PUNCT
caryologia-232	25	8	the	the	DET
caryologia-232	25	9	promoter	promoter	NOUN
caryologia-232	25	10	elements	element	NOUN
caryologia-232	25	11	,	,	PUNCT
caryologia-232	25	12	the	the	DET
caryologia-232	25	13	polyadenylation	polyadenylation	NOUN
caryologia-232	25	14	signals	signal	NOUN
caryologia-232	25	15	and	and	CCONJ
caryologia-232	25	16	the	the	DET
caryologia-232	25	17	expression	expression	NOUN
caryologia-232	25	18	enhancers	enhancer	NOUN
caryologia-232	25	19	are	be	AUX
caryologia-232	25	20	found	find	VERB
caryologia-232	25	21	in	in	ADP
caryologia-232	25	22	the	the	DET
caryologia-232	25	23	ltrs	ltrs	PROPN
caryologia-232	25	24	.	.	PUNCT
caryologia-232	26	1	these	these	DET
caryologia-232	26	2	domains	domain	NOUN
caryologia-232	26	3	regulate	regulate	VERB
caryologia-232	26	4	the	the	DET
caryologia-232	26	5	transcription	transcription	NOUN
caryologia-232	26	6	of	of	ADP
caryologia-232	26	7	the	the	DET
caryologia-232	26	8	element	element	NOUN
caryologia-232	26	9	(	(	PUNCT
caryologia-232	26	10	bennetzen	bennetzen	NOUN
caryologia-232	26	11	2000	2000	NUM
caryologia-232	26	12	)	)	PUNCT
caryologia-232	26	13	.	.	PUNCT
caryologia-232	27	1	in	in	ADP
caryologia-232	27	2	the	the	DET
caryologia-232	27	3	coding	code	VERB
caryologia-232	27	4	portion	portion	NOUN
caryologia-232	27	5	of	of	ADP
caryologia-232	27	6	the	the	DET
caryologia-232	27	7	ltr	ltr	NOUN
caryologia-232	27	8	-	-	PUNCT
caryologia-232	27	9	res	re	NOUN
caryologia-232	27	10	,	,	PUNCT
caryologia-232	27	11	gag	gag	NOUN
caryologia-232	27	12	and	and	CCONJ
caryologia-232	27	13	pol	pol	NOUN
caryologia-232	27	14	domains	domain	NOUN
caryologia-232	27	15	can	can	AUX
caryologia-232	27	16	be	be	AUX
caryologia-232	27	17	found	find	VERB
caryologia-232	27	18	.	.	PUNCT
caryologia-232	28	1	gag	gag	NOUN
caryologia-232	28	2	encodes	encode	NOUN
caryologia-232	28	3	virus	virus	NOUN
caryologia-232	28	4	-	-	PUNCT
caryologia-232	28	5	like	like	ADJ
caryologia-232	28	6	particles	particle	NOUN
caryologia-232	28	7	,	,	PUNCT
caryologia-232	28	8	pol	pol	NOUN
caryologia-232	28	9	encodes	encode	VERB
caryologia-232	28	10	the	the	DET
caryologia-232	28	11	enzymes	enzyme	NOUN
caryologia-232	28	12	necessary	necessary	ADJ
caryologia-232	28	13	to	to	PART
caryologia-232	28	14	produce	produce	VERB
caryologia-232	28	15	new	new	ADJ
caryologia-232	28	16	cdna	cdna	NOUN
caryologia-232	28	17	molecules	molecule	NOUN
caryologia-232	28	18	from	from	ADP
caryologia-232	28	19	the	the	DET
caryologia-232	28	20	re	re	NOUN
caryologia-232	28	21	transcripts	transcript	NOUN
caryologia-232	28	22	and	and	CCONJ
caryologia-232	28	23	to	to	PART
caryologia-232	28	24	integrate	integrate	VERB
caryologia-232	28	25	them	they	PRON
caryologia-232	28	26	into	into	ADP
caryologia-232	28	27	new	new	ADJ
caryologia-232	28	28	sites	site	NOUN
caryologia-232	28	29	in	in	ADP
caryologia-232	28	30	the	the	DET
caryologia-232	28	31	host	host	NOUN
caryologia-232	28	32	genome	genome	NOUN
caryologia-232	28	33	(	(	PUNCT
caryologia-232	28	34	bennetzen	bennetzen	NOUN
caryologia-232	28	35	2000	2000	NUM
caryologia-232	28	36	)	)	PUNCT
caryologia-232	28	37	.	.	PUNCT
caryologia-232	29	1	other	other	ADJ
caryologia-232	29	2	structural	structural	ADJ
caryologia-232	29	3	features	feature	NOUN
caryologia-232	29	4	involved	involve	VERB
caryologia-232	29	5	in	in	ADP
caryologia-232	29	6	the	the	DET
caryologia-232	29	7	re	re	NOUN
caryologia-232	29	8	replication	replication	NOUN
caryologia-232	29	9	process	process	NOUN
caryologia-232	29	10	include	include	VERB
caryologia-232	29	11	a	a	DET
caryologia-232	29	12	primer	primer	NOUN
caryologia-232	29	13	binding	bind	VERB
caryologia-232	29	14	site	site	NOUN
caryologia-232	29	15	and	and	CCONJ
caryologia-232	29	16	a	a	DET
caryologia-232	29	17	poly	poly	ADJ
caryologia-232	29	18	-	-	PUNCT
caryologia-232	29	19	purine	purine	NOUN
caryologia-232	29	20	tract	tract	NOUN
caryologia-232	29	21	(	(	PUNCT
caryologia-232	29	22	bennetzen	bennetzen	NOUN
caryologia-232	29	23	2000	2000	NUM
caryologia-232	29	24	)	)	PUNCT
caryologia-232	29	25	.	.	PUNCT
caryologia-232	30	1	the	the	DET
caryologia-232	30	2	ltr	ltr	NOUN
caryologia-232	30	3	-	-	PUNCT
caryologia-232	30	4	res	re	NOUN
caryologia-232	30	5	are	be	AUX
caryologia-232	30	6	essentially	essentially	ADV
caryologia-232	30	7	subdivided	subdivide	VERB
caryologia-232	30	8	into	into	ADP
caryologia-232	30	9	two	two	NUM
caryologia-232	30	10	superfamilies	superfamily	NOUN
caryologia-232	30	11	,	,	PUNCT
caryologia-232	30	12	gypsy	gypsy	NOUN
caryologia-232	30	13	and	and	CCONJ
caryologia-232	30	14	copia	copia	PROPN
caryologia-232	30	15	(	(	PUNCT
caryologia-232	30	16	wicker	wicker	PROPN
caryologia-232	30	17	et	et	PROPN
caryologia-232	30	18	al	al	PROPN
caryologia-232	30	19	.	.	PROPN
caryologia-232	30	20	2007	2007	NUM
caryologia-232	30	21	)	)	PUNCT
caryologia-232	30	22	,	,	PUNCT
caryologia-232	30	23	according	accord	VERB
caryologia-232	30	24	to	to	ADP
caryologia-232	30	25	the	the	DET
caryologia-232	30	26	order	order	NOUN
caryologia-232	30	27	of	of	ADP
caryologia-232	30	28	gene	gene	NOUN
caryologia-232	30	29	sequences	sequence	NOUN
caryologia-232	30	30	within	within	ADP
caryologia-232	30	31	the	the	DET
caryologia-232	30	32	pol	pol	NOUN
caryologia-232	30	33	domain	domain	NOUN
caryologia-232	30	34	.	.	PUNCT
caryologia-232	31	1	superfamilies	superfamily	NOUN
caryologia-232	31	2	,	,	PUNCT
caryologia-232	31	3	in	in	ADP
caryologia-232	31	4	turn	turn	NOUN
caryologia-232	31	5	,	,	PUNCT
caryologia-232	31	6	are	be	AUX
caryologia-232	31	7	distinguished	distinguish	VERB
caryologia-232	31	8	into	into	ADP
caryologia-232	31	9	several	several	ADJ
caryologia-232	31	10	lineages	lineage	NOUN
caryologia-232	31	11	in	in	ADP
caryologia-232	31	12	relation	relation	NOUN
caryologia-232	31	13	to	to	ADP
caryologia-232	31	14	sequence	sequence	NOUN
caryologia-232	31	15	conservation	conservation	NOUN
caryologia-232	31	16	and	and	CCONJ
caryologia-232	31	17	structure	structure	NOUN
caryologia-232	31	18	(	(	PUNCT
caryologia-232	31	19	barghini	barghini	PROPN
caryologia-232	31	20	et	et	PROPN
caryologia-232	31	21	al	al	PROPN
caryologia-232	31	22	.	.	PROPN
caryologia-232	31	23	2015a	2015a	NUM
caryologia-232	31	24	;	;	PUNCT
caryologia-232	31	25	usai	usai	VERB
caryologia-232	31	26	et	et	PROPN
caryologia-232	31	27	al	al	PROPN
caryologia-232	31	28	.	.	PROPN
caryologia-232	31	29	2017	2017	NUM
caryologia-232	31	30	;	;	PUNCT
caryologia-232	31	31	buti	buti	NOUN
caryologia-232	31	32	et	et	PROPN
caryologia-232	31	33	al	al	PROPN
caryologia-232	31	34	.	.	PROPN
caryologia-232	31	35	2018	2018	NUM
caryologia-232	31	36	;	;	PUNCT
caryologia-232	31	37	mascagni	mascagni	NOUN
caryologia-232	31	38	et	et	PROPN
caryologia-232	31	39	al	al	PROPN
caryologia-232	31	40	.	.	PROPN
caryologia-232	31	41	2017	2017	NUM
caryologia-232	31	42	;	;	PUNCT
caryologia-232	31	43	2018a	2018a	NUM
caryologia-232	31	44	)	)	PUNCT
caryologia-232	31	45	.	.	PUNCT
caryologia-232	32	1	the	the	DET
caryologia-232	32	2	replicative	replicative	ADJ
caryologia-232	32	3	activity	activity	NOUN
caryologia-232	32	4	of	of	ADP
caryologia-232	32	5	ltr	ltr	ADJ
caryologia-232	32	6	-	-	PUNCT
caryologia-232	32	7	res	re	NOUN
caryologia-232	32	8	can	can	AUX
caryologia-232	32	9	determine	determine	VERB
caryologia-232	32	10	large	large	ADJ
caryologia-232	32	11	variations	variation	NOUN
caryologia-232	32	12	in	in	ADP
caryologia-232	32	13	the	the	DET
caryologia-232	32	14	genome	genome	NOUN
caryologia-232	32	15	structureof	structureof	NOUN
caryologia-232	32	16	eukaryotic	eukaryotic	ADJ
caryologia-232	32	17	species	specie	NOUN
caryologia-232	32	18	(	(	PUNCT
caryologia-232	32	19	springer	springer	NOUN
caryologia-232	32	20	et	et	PROPN
caryologia-232	32	21	al	al	PROPN
caryologia-232	32	22	.	.	PROPN
caryologia-232	32	23	2009	2009	NUM
caryologia-232	32	24	;	;	PUNCT
caryologia-232	32	25	vitte	vitte	PROPN
caryologia-232	32	26	et	et	PROPN
caryologia-232	32	27	al	al	PROPN
caryologia-232	32	28	.	.	PROPN
caryologia-232	32	29	2014	2014	NUM
caryologia-232	32	30	)	)	PUNCT
caryologia-232	32	31	.	.	PUNCT
caryologia-232	33	1	among	among	ADP
caryologia-232	33	2	the	the	DET
caryologia-232	33	3	effects	effect	NOUN
caryologia-232	33	4	of	of	ADP
caryologia-232	33	5	retrotransposition	retrotransposition	NOUN
caryologia-232	33	6	,	,	PUNCT
caryologia-232	33	7	besides	besides	SCONJ
caryologia-232	33	8	determining	determine	VERB
caryologia-232	33	9	changes	change	NOUN
caryologia-232	33	10	in	in	ADP
caryologia-232	33	11	genome	genome	NOUN
caryologia-232	33	12	size	size	NOUN
caryologia-232	33	13	,	,	PUNCT
caryologia-232	33	14	re	re	VERB
caryologia-232	33	15	-	-	VERB
caryologia-232	33	16	related	relate	VERB
caryologia-232	33	17	structural	structural	ADJ
caryologia-232	33	18	variations	variation	NOUN
caryologia-232	33	19	can	can	AUX
caryologia-232	33	20	modify	modify	VERB
caryologia-232	33	21	the	the	DET
caryologia-232	33	22	regulation	regulation	NOUN
caryologia-232	33	23	patterns	pattern	NOUN
caryologia-232	33	24	of	of	ADP
caryologia-232	33	25	protein	protein	NOUN
caryologia-232	33	26	-	-	PUNCT
caryologia-232	33	27	encoding	encoding	NOUN
caryologia-232	33	28	genes	gene	NOUN
caryologia-232	33	29	and	and	CCONJ
caryologia-232	33	30	,	,	PUNCT
caryologia-232	33	31	consequently	consequently	ADV
caryologia-232	33	32	,	,	PUNCT
caryologia-232	33	33	their	their	PRON
caryologia-232	33	34	activity	activity	NOUN
caryologia-232	33	35	,	,	PUNCT
caryologia-232	33	36	influencing	influence	VERB
caryologia-232	33	37	the	the	DET
caryologia-232	33	38	phenotype	phenotype	NOUN
caryologia-232	33	39	(	(	PUNCT
caryologia-232	33	40	slotkin	slotkin	ADJ
caryologia-232	33	41	and	and	CCONJ
caryologia-232	33	42	martienssen	martienssen	VERB
caryologia-232	33	43	2007	2007	NUM
caryologia-232	33	44	;	;	PUNCT
caryologia-232	33	45	butelli	butelli	PROPN
caryologia-232	33	46	et	et	PROPN
caryologia-232	33	47	al	al	PROPN
caryologia-232	33	48	.	.	PROPN
caryologia-232	33	49	2012	2012	NUM
caryologia-232	33	50	;	;	PUNCT
caryologia-232	33	51	falchi	falchi	PROPN
caryologia-232	33	52	et	et	PROPN
caryologia-232	33	53	al	al	PROPN
caryologia-232	33	54	.	.	PROPN
caryologia-232	33	55	2013	2013	NUM
caryologia-232	33	56	;	;	PUNCT
caryologia-232	33	57	lisch	lisch	ADJ
caryologia-232	33	58	2013	2013	NUM
caryologia-232	33	59	)	)	PUNCT
caryologia-232	33	60	.	.	PUNCT
caryologia-232	34	1	the	the	DET
caryologia-232	34	2	first	first	ADJ
caryologia-232	34	3	phase	phase	NOUN
caryologia-232	34	4	of	of	ADP
caryologia-232	34	5	retrotransposition	retrotransposition	NOUN
caryologia-232	34	6	is	be	AUX
caryologia-232	34	7	represented	represent	VERB
caryologia-232	34	8	by	by	ADP
caryologia-232	34	9	the	the	DET
caryologia-232	34	10	transcription	transcription	NOUN
caryologia-232	34	11	of	of	ADP
caryologia-232	34	12	the	the	DET
caryologia-232	34	13	element	element	NOUN
caryologia-232	34	14	.	.	PUNCT
caryologia-232	35	1	the	the	DET
caryologia-232	35	2	re	re	NOUN
caryologia-232	35	3	transcripts	transcript	NOUN
caryologia-232	35	4	can	can	AUX
caryologia-232	35	5	be	be	AUX
caryologia-232	35	6	capped	cap	VERB
caryologia-232	35	7	and	and	CCONJ
caryologia-232	35	8	polyadenylated	polyadenylate	VERB
caryologia-232	35	9	or	or	CCONJ
caryologia-232	35	10	not	not	PART
caryologia-232	35	11	.	.	PUNCT
caryologia-232	36	1	in	in	ADP
caryologia-232	36	2	the	the	DET
caryologia-232	36	3	former	former	ADJ
caryologia-232	36	4	case	case	NOUN
caryologia-232	36	5	,	,	PUNCT
caryologia-232	36	6	transcripts	transcript	NOUN
caryologia-232	36	7	should	should	AUX
caryologia-232	36	8	be	be	AUX
caryologia-232	36	9	destined	destine	VERB
caryologia-232	36	10	to	to	PART
caryologia-232	36	11	be	be	AUX
caryologia-232	36	12	translated	translate	VERB
caryologia-232	36	13	into	into	ADP
caryologia-232	36	14	the	the	DET
caryologia-232	36	15	enzymes	enzyme	NOUN
caryologia-232	36	16	for	for	ADP
caryologia-232	36	17	retrotransposition	retrotransposition	NOUN
caryologia-232	36	18	,	,	PUNCT
caryologia-232	36	19	in	in	ADP
caryologia-232	36	20	the	the	DET
caryologia-232	36	21	latter	latter	ADJ
caryologia-232	36	22	case	case	NOUN
caryologia-232	36	23	,	,	PUNCT
caryologia-232	36	24	transcripts	transcript	NOUN
caryologia-232	36	25	should	should	AUX
caryologia-232	36	26	be	be	AUX
caryologia-232	36	27	reverse	reverse	NOUN
caryologia-232	36	28	-	-	PUNCT
caryologia-232	36	29	transcribed	transcribe	VERB
caryologia-232	36	30	(	(	PUNCT
caryologia-232	36	31	chang	chang	PROPN
caryologia-232	36	32	et	et	PROPN
caryologia-232	36	33	al	al	PROPN
caryologia-232	36	34	.	.	PROPN
caryologia-232	36	35	2013	2013	NUM
caryologia-232	36	36	;	;	PUNCT
caryologia-232	36	37	meignin	meignin	PROPN
caryologia-232	36	38	et	et	PROPN
caryologia-232	36	39	al	al	PROPN
caryologia-232	36	40	.	.	PROPN
caryologia-232	36	41	2003	2003	NUM
caryologia-232	36	42	)	)	PUNCT
caryologia-232	36	43	.	.	PUNCT
caryologia-232	37	1	transcription	transcription	NOUN
caryologia-232	37	2	of	of	ADP
caryologia-232	37	3	res	re	NOUN
caryologia-232	37	4	has	have	AUX
caryologia-232	37	5	been	be	AUX
caryologia-232	37	6	described	describe	VERB
caryologia-232	37	7	in	in	ADP
caryologia-232	37	8	several	several	ADJ
caryologia-232	37	9	plant	plant	NOUN
caryologia-232	37	10	species	specie	NOUN
caryologia-232	37	11	(	(	PUNCT
caryologia-232	37	12	grandbastien	grandbastien	NOUN
caryologia-232	37	13	2015	2015	NUM
caryologia-232	37	14	)	)	PUNCT
caryologia-232	37	15	.	.	PUNCT
caryologia-232	38	1	in	in	ADP
caryologia-232	38	2	some	some	DET
caryologia-232	38	3	grass	grass	NOUN
caryologia-232	38	4	species	specie	NOUN
caryologia-232	38	5	ltr	ltr	NOUN
caryologia-232	38	6	-	-	PUNCT
caryologia-232	38	7	res	re	NOUN
caryologia-232	38	8	are	be	AUX
caryologia-232	38	9	poorly	poorly	ADV
caryologia-232	38	10	constitutively	constitutively	ADV
caryologia-232	38	11	transcribed	transcribe	VERB
caryologia-232	38	12	(	(	PUNCT
caryologia-232	38	13	vicient	vicient	NOUN
caryologia-232	38	14	et	et	PROPN
caryologia-232	38	15	al	al	PROPN
caryologia-232	38	16	.	.	PROPN
caryologia-232	38	17	2001	2001	NUM
caryologia-232	38	18	;	;	PUNCT
caryologia-232	38	19	ishiguro	ishiguro	PROPN
caryologia-232	38	20	et	et	PROPN
caryologia-232	38	21	al	al	PROPN
caryologia-232	38	22	.	.	PROPN
caryologia-232	38	23	2014	2014	NUM
caryologia-232	38	24	)	)	PUNCT
caryologia-232	38	25	.	.	PUNCT
caryologia-232	39	1	in	in	ADP
caryologia-232	39	2	other	other	ADJ
caryologia-232	39	3	species	specie	NOUN
caryologia-232	39	4	,	,	PUNCT
caryologia-232	39	5	for	for	ADP
caryologia-232	39	6	example	example	NOUN
caryologia-232	39	7	in	in	ADP
caryologia-232	39	8	populus	populus	ADJ
caryologia-232	39	9	x	x	NOUN
caryologia-232	39	10	canadensis	canadensis	NOUN
caryologia-232	39	11	,	,	PUNCT
caryologia-232	39	12	certain	certain	ADJ
caryologia-232	39	13	ltr	ltr	NOUN
caryologia-232	39	14	-	-	PUNCT
caryologia-232	39	15	res	re	NOUN
caryologia-232	39	16	are	be	AUX
caryologia-232	39	17	expressed	express	VERB
caryologia-232	39	18	constitutively	constitutively	ADV
caryologia-232	39	19	,	,	PUNCT
caryologia-232	39	20	without	without	ADP
caryologia-232	39	21	apparent	apparent	ADJ
caryologia-232	39	22	induction	induction	NOUN
caryologia-232	39	23	conditions	condition	NOUN
caryologia-232	39	24	(	(	PUNCT
caryologia-232	39	25	giordani	giordani	NOUN
caryologia-232	39	26	et	et	PROPN
caryologia-232	39	27	al	al	PROPN
caryologia-232	39	28	.	.	PROPN
caryologia-232	39	29	2016	2016	NUM
caryologia-232	39	30	)	)	PUNCT
caryologia-232	39	31	.	.	PUNCT
caryologia-232	40	1	retrotransposition	retrotransposition	NOUN
caryologia-232	40	2	is	be	AUX
caryologia-232	40	3	completed	complete	VERB
caryologia-232	40	4	when	when	SCONJ
caryologia-232	40	5	a	a	DET
caryologia-232	40	6	new	new	ADJ
caryologia-232	40	7	copy	copy	NOUN
caryologia-232	40	8	of	of	ADP
caryologia-232	40	9	the	the	DET
caryologia-232	40	10	element	element	NOUN
caryologia-232	40	11	is	be	AUX
caryologia-232	40	12	inserted	insert	VERB
caryologia-232	40	13	into	into	ADP
caryologia-232	40	14	the	the	DET
caryologia-232	40	15	genome	genome	NOUN
caryologia-232	40	16	.	.	PUNCT
caryologia-232	41	1	this	this	PRON
caryologia-232	41	2	has	have	AUX
caryologia-232	41	3	been	be	AUX
caryologia-232	41	4	reported	report	VERB
caryologia-232	41	5	for	for	ADP
caryologia-232	41	6	tnt1	tnt1	NOUN
caryologia-232	41	7	and	and	CCONJ
caryologia-232	41	8	tto1	tto1	NOUN
caryologia-232	41	9	elements	element	NOUN
caryologia-232	41	10	of	of	ADP
caryologia-232	41	11	nicotiana	nicotiana	NOUN
caryologia-232	41	12	and	and	CCONJ
caryologia-232	41	13	for	for	ADP
caryologia-232	41	14	tos17	tos17	PROPN
caryologia-232	41	15	of	of	ADP
caryologia-232	41	16	rice	rice	NOUN
caryologia-232	41	17	,	,	PUNCT
caryologia-232	41	18	induced	induce	VERB
caryologia-232	41	19	by	by	ADP
caryologia-232	41	20	tissue	tissue	NOUN
caryologia-232	41	21	culture	culture	NOUN
caryologia-232	41	22	(	(	PUNCT
caryologia-232	41	23	grandbastien	grandbastien	NOUN
caryologia-232	41	24	1998	1998	NUM
caryologia-232	41	25	)	)	PUNCT
caryologia-232	41	26	.	.	PUNCT
caryologia-232	42	1	complete	complete	ADJ
caryologia-232	42	2	retrotransposition	retrotransposition	NOUN
caryologia-232	42	3	of	of	ADP
caryologia-232	42	4	a	a	DET
caryologia-232	42	5	copia	copia	NOUN
caryologia-232	42	6	re	re	VERB
caryologia-232	42	7	has	have	AUX
caryologia-232	42	8	been	be	AUX
caryologia-232	42	9	described	describe	VERB
caryologia-232	42	10	also	also	ADV
caryologia-232	42	11	in	in	ADP
caryologia-232	42	12	sunflower	sunflower	NOUN
caryologia-232	42	13	seedlings	seedling	NOUN
caryologia-232	42	14	,	,	PUNCT
caryologia-232	42	15	grown	grow	VERB
caryologia-232	42	16	under	under	ADP
caryologia-232	42	17	standard	standard	ADJ
caryologia-232	42	18	conditions	condition	NOUN
caryologia-232	42	19	(	(	PUNCT
caryologia-232	42	20	vukich	vukich	X
caryologia-232	42	21	et	et	PROPN
caryologia-232	42	22	al	al	PROPN
caryologia-232	42	23	.	.	PROPN
caryologia-232	42	24	2009	2009	NUM
caryologia-232	42	25	)	)	PUNCT
caryologia-232	42	26	.	.	PUNCT
caryologia-232	43	1	retrotransposition	retrotransposition	NOUN
caryologia-232	43	2	is	be	AUX
caryologia-232	43	3	generally	generally	ADV
caryologia-232	43	4	limited	limit	VERB
caryologia-232	43	5	by	by	ADP
caryologia-232	43	6	the	the	DET
caryologia-232	43	7	host	host	NOUN
caryologia-232	43	8	genome	genome	NOUN
caryologia-232	43	9	due	due	ADP
caryologia-232	43	10	to	to	ADP
caryologia-232	43	11	its	its	PRON
caryologia-232	43	12	potentially	potentially	ADV
caryologia-232	43	13	mutagenic	mutagenic	ADJ
caryologia-232	43	14	action	action	NOUN
caryologia-232	43	15	.	.	PUNCT
caryologia-232	44	1	a	a	DET
caryologia-232	44	2	major	major	ADJ
caryologia-232	44	3	mechanism	mechanism	NOUN
caryologia-232	44	4	to	to	PART
caryologia-232	44	5	inactivate	inactivate	VERB
caryologia-232	44	6	mobile	mobile	ADJ
caryologia-232	44	7	elements	element	NOUN
caryologia-232	44	8	involves	involve	VERB
caryologia-232	44	9	the	the	DET
caryologia-232	44	10	methylation	methylation	NOUN
caryologia-232	44	11	of	of	ADP
caryologia-232	44	12	histones	histone	NOUN
caryologia-232	44	13	and	and	CCONJ
caryologia-232	44	14	cytosine	cytosine	NOUN
caryologia-232	44	15	residues	residue	NOUN
caryologia-232	44	16	with	with	ADP
caryologia-232	44	17	consequent	consequent	ADJ
caryologia-232	44	18	silencing	silencing	NOUN
caryologia-232	44	19	of	of	ADP
caryologia-232	44	20	chromatin	chromatin	NOUN
caryologia-232	44	21	(	(	PUNCT
caryologia-232	44	22	dieguez	dieguez	NOUN
caryologia-232	44	23	et	et	PROPN
caryologia-232	44	24	al	al	PROPN
caryologia-232	44	25	.	.	PROPN
caryologia-232	44	26	1998	1998	NUM
caryologia-232	44	27	)	)	PUNCT
caryologia-232	44	28	.	.	PUNCT
caryologia-232	45	1	post	post	ADJ
caryologia-232	45	2	-	-	ADJ
caryologia-232	45	3	transcriptional	transcriptional	ADJ
caryologia-232	45	4	silencing	silencing	NOUN
caryologia-232	45	5	by	by	ADP
caryologia-232	45	6	rna	rna	NOUN
caryologia-232	45	7	degradation	degradation	NOUN
caryologia-232	45	8	also	also	ADV
caryologia-232	45	9	plays	play	VERB
caryologia-232	45	10	an	an	DET
caryologia-232	45	11	important	important	ADJ
caryologia-232	45	12	role	role	NOUN
caryologia-232	45	13	in	in	ADP
caryologia-232	45	14	the	the	DET
caryologia-232	45	15	epigenetic	epigenetic	ADJ
caryologia-232	45	16	control	control	NOUN
caryologia-232	45	17	of	of	ADP
caryologia-232	45	18	re	re	NOUN
caryologia-232	45	19	activity	activity	NOUN
caryologia-232	45	20	(	(	PUNCT
caryologia-232	45	21	slotkin	slotkin	ADJ
caryologia-232	45	22	and	and	CCONJ
caryologia-232	45	23	martienssen	martienssen	ADJ
caryologia-232	45	24	2007	2007	NUM
caryologia-232	45	25	;	;	PUNCT
caryologia-232	45	26	lisch	lisch	PROPN
caryologia-232	45	27	2013	2013	NUM
caryologia-232	45	28	;	;	PUNCT
caryologia-232	45	29	ito	ito	PROPN
caryologia-232	45	30	2013	2013	NUM
caryologia-232	45	31	)	)	PUNCT
caryologia-232	45	32	.	.	PUNCT
caryologia-232	46	1	in	in	ADP
caryologia-232	46	2	recent	recent	ADJ
caryologia-232	46	3	years	year	NOUN
caryologia-232	46	4	,	,	PUNCT
caryologia-232	46	5	many	many	ADJ
caryologia-232	46	6	studies	study	NOUN
caryologia-232	46	7	have	have	AUX
caryologia-232	46	8	been	be	AUX
caryologia-232	46	9	carried	carry	VERB
caryologia-232	46	10	on	on	ADP
caryologia-232	46	11	the	the	DET
caryologia-232	46	12	ltr	ltr	NOUN
caryologia-232	46	13	-	-	PUNCT
caryologia-232	46	14	res	re	NOUN
caryologia-232	46	15	of	of	ADP
caryologia-232	46	16	the	the	DET
caryologia-232	46	17	genus	genus	ADJ
caryologia-232	46	18	populus	populus	NOUN
caryologia-232	46	19	and	and	CCONJ
caryologia-232	46	20	in	in	ADP
caryologia-232	46	21	particular	particular	ADJ
caryologia-232	46	22	on	on	ADP
caryologia-232	46	23	p.	p.	PROPN
caryologia-232	46	24	trichocarpa	trichocarpa	NOUN
caryologia-232	46	25	,	,	PUNCT
caryologia-232	46	26	which	which	PRON
caryologia-232	46	27	is	be	AUX
caryologia-232	46	28	considered	consider	VERB
caryologia-232	46	29	a	a	DET
caryologia-232	46	30	model	model	NOUN
caryologia-232	46	31	species	species	NOUN
caryologia-232	46	32	for	for	ADP
caryologia-232	46	33	forest	forest	NOUN
caryologia-232	46	34	trees	tree	NOUN
caryologia-232	46	35	.	.	PUNCT
caryologia-232	47	1	the	the	DET
caryologia-232	47	2	p.	p.	PROPN
caryologia-232	47	3	trichocarpa	trichocarpa	NOUN
caryologia-232	47	4	genome	genome	NOUN
caryologia-232	47	5	was	be	AUX
caryologia-232	47	6	the	the	DET
caryologia-232	47	7	first	first	ADJ
caryologia-232	47	8	genome	genome	NOUN
caryologia-232	47	9	to	to	PART
caryologia-232	47	10	have	have	AUX
caryologia-232	47	11	been	be	AUX
caryologia-232	47	12	sequenced	sequence	VERB
caryologia-232	47	13	for	for	ADP
caryologia-232	47	14	a	a	DET
caryologia-232	47	15	forest	forest	NOUN
caryologia-232	47	16	species	specie	NOUN
caryologia-232	47	17	(	(	PUNCT
caryologia-232	47	18	tuskan	tuskan	PROPN
caryologia-232	47	19	et	et	PROPN
caryologia-232	47	20	al	al	PROPN
caryologia-232	47	21	.	.	PROPN
caryologia-232	47	22	2006	2006	NUM
caryologia-232	47	23	)	)	PUNCT
caryologia-232	47	24	and	and	CCONJ
caryologia-232	47	25	has	have	AUX
caryologia-232	47	26	been	be	AUX
caryologia-232	47	27	recently	recently	ADV
caryologia-232	47	28	updated	update	VERB
caryologia-232	47	29	(	(	PUNCT
caryologia-232	47	30	zeng	zeng	PROPN
caryologia-232	47	31	et	et	PROPN
caryologia-232	47	32	al	al	PROPN
caryologia-232	47	33	.	.	PROPN
caryologia-232	47	34	2017	2017	NUM
caryologia-232	47	35	)	)	PUNCT
caryologia-232	47	36	.	.	PUNCT
caryologia-232	48	1	this	this	DET
caryologia-232	48	2	species	specie	NOUN
caryologia-232	48	3	has	have	VERB
caryologia-232	48	4	a	a	DET
caryologia-232	48	5	relatively	relatively	ADV
caryologia-232	48	6	small	small	ADJ
caryologia-232	48	7	genome	genome	NOUN
caryologia-232	48	8	(	(	PUNCT
caryologia-232	48	9	550	550	NUM
caryologia-232	48	10	mbp	mbp	NOUN
caryologia-232	48	11	)	)	PUNCT
caryologia-232	48	12	and	and	CCONJ
caryologia-232	48	13	res	re	NOUN
caryologia-232	48	14	cover	cover	VERB
caryologia-232	48	15	approximately	approximately	ADV
caryologia-232	48	16	176	176	NUM
caryologia-232	48	17	mbp	mbp	NOUN
caryologia-232	48	18	(	(	PUNCT
caryologia-232	48	19	32	32	NUM
caryologia-232	48	20	%	%	NOUN
caryologia-232	48	21	of	of	ADP
caryologia-232	48	22	the	the	DET
caryologia-232	48	23	genome	genome	NOUN
caryologia-232	48	24	)	)	PUNCT
caryologia-232	48	25	,	,	PUNCT
caryologia-232	48	26	with	with	ADP
caryologia-232	48	27	a	a	DET
caryologia-232	48	28	prevalence	prevalence	NOUN
caryologia-232	48	29	of	of	ADP
caryologia-232	48	30	gypsy	gypsy	PROPN
caryologia-232	48	31	over	over	ADP
caryologia-232	48	32	copia	copia	PROPN
caryologia-232	48	33	re	re	PROPN
caryologia-232	48	34	sequences	sequence	NOUN
caryologia-232	48	35	(	(	PUNCT
caryologia-232	48	36	tuskan	tuskan	PROPN
caryologia-232	48	37	et	et	PROPN
caryologia-232	48	38	al	al	PROPN
caryologia-232	48	39	.	.	PROPN
caryologia-232	48	40	2006	2006	NUM
caryologia-232	48	41	)	)	PUNCT
caryologia-232	48	42	.	.	PUNCT
caryologia-232	49	1	populus	populus	PROPN
caryologia-232	49	2	trichocarpa	trichocarpa	NOUN
caryologia-232	49	3	res	re	NOUN
caryologia-232	49	4	have	have	AUX
caryologia-232	49	5	been	be	AUX
caryologia-232	49	6	identified	identify	VERB
caryologia-232	49	7	and	and	CCONJ
caryologia-232	49	8	annotated	annotate	VERB
caryologia-232	49	9	according	accord	VERB
caryologia-232	49	10	to	to	ADP
caryologia-232	49	11	their	their	PRON
caryologia-232	49	12	superfamily	superfamily	ADJ
caryologia-232	49	13	and	and	CCONJ
caryologia-232	49	14	lineage	lineage	NOUN
caryologia-232	49	15	,	,	PUNCT
caryologia-232	49	16	and	and	CCONJ
caryologia-232	49	17	ltr	ltr	PROPN
caryologia-232	49	18	-	-	PUNCT
caryologia-232	49	19	re	re	NOUN
caryologia-232	49	20	genomic	genomic	NOUN
caryologia-232	49	21	abundance	abundance	NOUN
caryologia-232	49	22	and	and	CCONJ
caryologia-232	49	23	age	age	NOUN
caryologia-232	49	24	of	of	ADP
caryologia-232	49	25	insertion	insertion	NOUN
caryologia-232	49	26	were	be	AUX
caryologia-232	49	27	analyzed	analyze	VERB
caryologia-232	49	28	as	as	ADV
caryologia-232	49	29	well	well	ADV
caryologia-232	49	30	(	(	PUNCT
caryologia-232	49	31	natali	natali	PROPN
caryologia-232	49	32	et	et	PROPN
caryologia-232	49	33	al	al	PROPN
caryologia-232	49	34	.	.	PROPN
caryologia-232	49	35	2015	2015	NUM
caryologia-232	49	36	;	;	PUNCT
caryologia-232	49	37	mascagni	mascagni	NOUN
caryologia-232	49	38	et	et	PROPN
caryologia-232	49	39	al	al	PROPN
caryologia-232	49	40	.	.	PROPN
caryologia-232	49	41	2018b	2018b	NUM
caryologia-232	49	42	)	)	PUNCT
caryologia-232	49	43	.	.	PUNCT
caryologia-232	50	1	p.	p.	NOUN
caryologia-232	50	2	trichocarpa	trichocarpa	PROPN
caryologia-232	50	3	ltrres	ltrre	NOUN
caryologia-232	50	4	have	have	AUX
caryologia-232	50	5	been	be	AUX
caryologia-232	50	6	also	also	ADV
caryologia-232	50	7	used	use	VERB
caryologia-232	50	8	as	as	ADP
caryologia-232	50	9	a	a	DET
caryologia-232	50	10	reference	reference	NOUN
caryologia-232	50	11	for	for	ADP
caryologia-232	50	12	several	several	ADJ
caryologia-232	50	13	analyses	analysis	NOUN
caryologia-232	50	14	related	relate	VERB
caryologia-232	50	15	to	to	ADP
caryologia-232	50	16	the	the	DET
caryologia-232	50	17	repetitive	repetitive	ADJ
caryologia-232	50	18	component	component	NOUN
caryologia-232	50	19	in	in	ADP
caryologia-232	50	20	other	other	ADJ
caryologia-232	50	21	species	specie	NOUN
caryologia-232	50	22	of	of	ADP
caryologia-232	50	23	the	the	DET
caryologia-232	50	24	genus	genus	ADJ
caryologia-232	50	25	populus	populus	NOUN
caryologia-232	50	26	(	(	PUNCT
caryologia-232	50	27	giordani	giordani	PROPN
caryologia-232	50	28	et	et	PROPN
caryologia-232	50	29	al	al	PROPN
caryologia-232	50	30	.	.	PROPN
caryologia-232	50	31	2016	2016	NUM
caryologia-232	50	32	;	;	PUNCT
caryologia-232	50	33	usai	usai	VERB
caryologia-232	50	34	et	et	PROPN
caryologia-232	50	35	al	al	PROPN
caryologia-232	50	36	.	.	PROPN
caryologia-232	50	37	2017	2017	NUM
caryologia-232	50	38	)	)	PUNCT
caryologia-232	50	39	.	.	PUNCT
caryologia-232	51	1	the	the	DET
caryologia-232	51	2	transcription	transcription	NOUN
caryologia-232	51	3	of	of	ADP
caryologia-232	51	4	res	re	NOUN
caryologia-232	51	5	is	be	AUX
caryologia-232	51	6	only	only	ADV
caryologia-232	51	7	the	the	DET
caryologia-232	51	8	first	first	ADJ
caryologia-232	51	9	step	step	NOUN
caryologia-232	51	10	for	for	ADP
caryologia-232	51	11	retrotransposition	retrotransposition	NOUN
caryologia-232	51	12	and	and	CCONJ
caryologia-232	51	13	insertion	insertion	NOUN
caryologia-232	51	14	of	of	ADP
caryologia-232	51	15	new	new	ADJ
caryologia-232	51	16	copies	copy	NOUN
caryologia-232	51	17	of	of	ADP
caryologia-232	51	18	the	the	DET
caryologia-232	51	19	element	element	NOUN
caryologia-232	51	20	in	in	ADP
caryologia-232	51	21	the	the	DET
caryologia-232	51	22	genome	genome	NOUN
caryologia-232	51	23	.	.	PUNCT
caryologia-232	52	1	for	for	ADP
caryologia-232	52	2	this	this	DET
caryologia-232	52	3	reason	reason	NOUN
caryologia-232	52	4	,	,	PUNCT
caryologia-232	52	5	analyses	analysis	NOUN
caryologia-232	52	6	on	on	ADP
caryologia-232	52	7	ltrre	ltrre	ADJ
caryologia-232	52	8	activity	activity	NOUN
caryologia-232	52	9	should	should	AUX
caryologia-232	52	10	include	include	VERB
caryologia-232	52	11	searching	search	VERB
caryologia-232	52	12	for	for	ADP
caryologia-232	52	13	new	new	ADJ
caryologia-232	52	14	insertion	insertion	NOUN
caryologia-232	52	15	events	event	NOUN
caryologia-232	52	16	.	.	PUNCT
caryologia-232	53	1	however	however	ADV
caryologia-232	53	2	,	,	PUNCT
caryologia-232	53	3	an	an	DET
caryologia-232	53	4	overall	overall	ADJ
caryologia-232	53	5	study	study	NOUN
caryologia-232	53	6	of	of	ADP
caryologia-232	53	7	factors	factor	NOUN
caryologia-232	53	8	potentially	potentially	ADV
caryologia-232	53	9	able	able	ADJ
caryologia-232	53	10	to	to	PART
caryologia-232	53	11	influence	influence	VERB
caryologia-232	53	12	the	the	DET
caryologia-232	53	13	transcription	transcription	NOUN
caryologia-232	53	14	of	of	ADP
caryologia-232	53	15	these	these	DET
caryologia-232	53	16	elements	element	NOUN
caryologia-232	53	17	is	be	AUX
caryologia-232	53	18	not	not	PART
caryologia-232	53	19	yet	yet	ADV
caryologia-232	53	20	available	available	ADJ
caryologia-232	53	21	for	for	ADP
caryologia-232	53	22	poplar	poplar	NOUN
caryologia-232	53	23	.	.	PUNCT
caryologia-232	54	1	we	we	PRON
caryologia-232	54	2	therefore	therefore	ADV
caryologia-232	54	3	decided	decide	VERB
caryologia-232	54	4	to	to	PART
caryologia-232	54	5	perform	perform	VERB
caryologia-232	54	6	a	a	DET
caryologia-232	54	7	meta	meta	ADJ
caryologia-232	54	8	-	-	PUNCT
caryologia-232	54	9	analysis	analysis	NOUN
caryologia-232	54	10	of	of	ADP
caryologia-232	54	11	ltr	ltr	NOUN
caryologia-232	54	12	-	-	PUNCT
caryologia-232	54	13	re	re	NOUN
caryologia-232	54	14	expression	expression	NOUN
caryologia-232	54	15	by	by	ADP
caryologia-232	54	16	using	use	VERB
caryologia-232	54	17	publicly	publicly	ADV
caryologia-232	54	18	available	available	ADJ
caryologia-232	54	19	genomic	genomic	NOUN
caryologia-232	54	20	dna	dna	NOUN
caryologia-232	54	21	and	and	CCONJ
caryologia-232	54	22	cdna	cdna	PROPN
caryologia-232	54	23	libraries	library	NOUN
caryologia-232	54	24	obtained	obtain	VERB
caryologia-232	54	25	from	from	ADP
caryologia-232	54	26	leaves	leave	NOUN
caryologia-232	54	27	of	of	ADP
caryologia-232	54	28	plants	plant	NOUN
caryologia-232	54	29	cultivated	cultivate	VERB
caryologia-232	54	30	under	under	ADP
caryologia-232	54	31	standard	standard	ADJ
caryologia-232	54	32	conditions	condition	NOUN
caryologia-232	54	33	or	or	CCONJ
caryologia-232	54	34	subjected	subject	VERB
caryologia-232	54	35	to	to	ADP
caryologia-232	54	36	four	four	NUM
caryologia-232	54	37	types	type	NOUN
caryologia-232	54	38	of	of	ADP
caryologia-232	54	39	abiotic	abiotic	ADJ
caryologia-232	54	40	stress	stress	NOUN
caryologia-232	54	41	(	(	PUNCT
caryologia-232	54	42	cold	cold	ADJ
caryologia-232	54	43	,	,	PUNCT
caryologia-232	54	44	drought	drought	NOUN
caryologia-232	54	45	,	,	PUNCT
caryologia-232	54	46	heat	heat	NOUN
caryologia-232	54	47	,	,	PUNCT
caryologia-232	54	48	and	and	CCONJ
caryologia-232	54	49	salt	salt	NOUN
caryologia-232	54	50	)	)	PUNCT
caryologia-232	54	51	.	.	PUNCT
caryologia-232	55	1	the	the	DET
caryologia-232	55	2	objectives	objective	NOUN
caryologia-232	55	3	of	of	ADP
caryologia-232	55	4	this	this	DET
caryologia-232	55	5	work	work	NOUN
caryologia-232	55	6	were	be	AUX
caryologia-232	55	7	to	to	PART
caryologia-232	55	8	evaluate	evaluate	VERB
caryologia-232	55	9	i	i	PRON
caryologia-232	55	10	)	)	PUNCT
caryologia-232	55	11	the	the	DET
caryologia-232	55	12	expression	expression	NOUN
caryologia-232	55	13	level	level	NOUN
caryologia-232	55	14	of	of	ADP
caryologia-232	55	15	res	re	NOUN
caryologia-232	55	16	under	under	ADP
caryologia-232	55	17	standard	standard	ADJ
caryologia-232	55	18	and	and	CCONJ
caryologia-232	55	19	stress	stress	NOUN
caryologia-232	55	20	conditions	condition	NOUN
caryologia-232	55	21	;	;	PUNCT
caryologia-232	55	22	ii	ii	X
caryologia-232	55	23	)	)	PUNCT
caryologia-232	55	24	the	the	DET
caryologia-232	55	25	correlation	correlation	NOUN
caryologia-232	55	26	between	between	ADP
caryologia-232	55	27	abundance	abundance	NOUN
caryologia-232	55	28	of	of	ADP
caryologia-232	55	29	res	re	NOUN
caryologia-232	55	30	and	and	CCONJ
caryologia-232	55	31	their	their	PRON
caryologia-232	55	32	expression	expression	NOUN
caryologia-232	55	33	level	level	NOUN
caryologia-232	55	34	;	;	PUNCT
caryologia-232	55	35	iii	iii	X
caryologia-232	55	36	)	)	PUNCT
caryologia-232	55	37	the	the	DET
caryologia-232	55	38	possibility	possibility	NOUN
caryologia-232	55	39	that	that	SCONJ
caryologia-232	55	40	different	different	ADJ
caryologia-232	55	41	ltr	ltr	NOUN
caryologia-232	55	42	-	-	PUNCT
caryologia-232	55	43	res	re	NOUN
caryologia-232	55	44	are	be	AUX
caryologia-232	55	45	induced	induce	VERB
caryologia-232	55	46	by	by	ADP
caryologia-232	55	47	different	different	ADJ
caryologia-232	55	48	(	(	PUNCT
caryologia-232	55	49	and	and	CCONJ
caryologia-232	55	50	specific	specific	ADJ
caryologia-232	55	51	)	)	PUNCT
caryologia-232	55	52	stresses	stress	NOUN
caryologia-232	55	53	;	;	PUNCT
caryologia-232	55	54	iv	iv	X
caryologia-232	55	55	)	)	PUNCT
caryologia-232	55	56	the	the	DET
caryologia-232	55	57	possibility	possibility	NOUN
caryologia-232	55	58	that	that	SCONJ
caryologia-232	55	59	the	the	DET
caryologia-232	55	60	expression	expression	NOUN
caryologia-232	55	61	of	of	ADP
caryologia-232	55	62	a	a	DET
caryologia-232	55	63	re	re	NOUN
caryologia-232	55	64	is	be	AUX
caryologia-232	55	65	related	relate	VERB
caryologia-232	55	66	to	to	ADP
caryologia-232	55	67	the	the	DET
caryologia-232	55	68	“	"	PUNCT
caryologia-232	55	69	genotype	genotype	NOUN
caryologia-232	55	70	”	"	PUNCT
caryologia-232	55	71	of	of	ADP
caryologia-232	55	72	the	the	DET
caryologia-232	55	73	re	re	X
caryologia-232	55	74	itself	itself	PRON
caryologia-232	55	75	,	,	PUNCT
caryologia-232	55	76	i.e.	i.e.	X
caryologia-232	55	77	,	,	PUNCT
caryologia-232	55	78	to	to	ADP
caryologia-232	55	79	the	the	DET
caryologia-232	55	80	lineage	lineage	NOUN
caryologia-232	55	81	to	to	PART
caryologia-232	55	82	which	which	PRON
caryologia-232	55	83	it	it	PRON
caryologia-232	55	84	belongs	belong	VERB
caryologia-232	55	85	;	;	PUNCT
caryologia-232	55	86	v	v	X
caryologia-232	55	87	)	)	PUNCT
caryologia-232	55	88	the	the	DET
caryologia-232	55	89	possibility	possibility	NOUN
caryologia-232	55	90	that	that	SCONJ
caryologia-232	55	91	the	the	DET
caryologia-232	55	92	chromosomal	chromosomal	ADJ
caryologia-232	55	93	localization	localization	NOUN
caryologia-232	55	94	of	of	ADP
caryologia-232	55	95	a	a	DET
caryologia-232	55	96	re	re	NOUN
caryologia-232	55	97	can	can	AUX
caryologia-232	55	98	influence	influence	VERB
caryologia-232	55	99	its	its	PRON
caryologia-232	55	100	expression	expression	NOUN
caryologia-232	55	101	.	.	PUNCT
caryologia-232	56	1	71genome	71genome	X
caryologia-232	57	1	analysis	analysis	NOUN
caryologia-232	57	2	of	of	ADP
caryologia-232	57	3	long	long	ADJ
caryologia-232	57	4	-	-	PUNCT
caryologia-232	57	5	terminal	terminal	ADJ
caryologia-232	57	6	-	-	PUNCT
caryologia-232	57	7	repeat	repeat	NOUN
caryologia-232	57	8	retrotransposon	retrotransposon	NOUN
caryologia-232	57	9	transcription	transcription	NOUN
caryologia-232	57	10	in	in	ADP
caryologia-232	57	11	leaves	leave	NOUN
caryologia-232	57	12	of	of	ADP
caryologia-232	57	13	populus	populus	ADJ
caryologia-232	57	14	trichocarpa	trichocarpa	NOUN
caryologia-232	57	15	methods	method	NOUN
caryologia-232	57	16	isolation	isolation	NOUN
caryologia-232	57	17	of	of	ADP
caryologia-232	57	18	full	full	ADJ
caryologia-232	57	19	-	-	PUNCT
caryologia-232	57	20	length	length	NOUN
caryologia-232	57	21	ltr	ltr	NOUN
caryologia-232	57	22	-	-	PUNCT
caryologia-232	57	23	res	re	NOUN
caryologia-232	57	24	of	of	ADP
caryologia-232	57	25	p.	p.	PROPN
caryologia-232	57	26	trichocarpa	trichocarpa	PROPN
caryologia-232	57	27	putative	putative	ADJ
caryologia-232	57	28	full	full	ADJ
caryologia-232	57	29	-	-	PUNCT
caryologia-232	57	30	length	length	NOUN
caryologia-232	57	31	ltr	ltr	NOUN
caryologia-232	57	32	-	-	PUNCT
caryologia-232	57	33	res	re	NOUN
caryologia-232	57	34	were	be	AUX
caryologia-232	57	35	isolated	isolate	VERB
caryologia-232	57	36	from	from	ADP
caryologia-232	57	37	the	the	DET
caryologia-232	57	38	gca_000002775.3	gca_000002775.3	PROPN
caryologia-232	57	39	version	version	NOUN
caryologia-232	57	40	(	(	PUNCT
caryologia-232	57	41	zeng	zeng	PROPN
caryologia-232	57	42	et	et	PROPN
caryologia-232	57	43	al	al	PROPN
caryologia-232	57	44	.	.	PROPN
caryologia-232	57	45	2017	2017	NUM
caryologia-232	57	46	)	)	PUNCT
caryologia-232	57	47	of	of	ADP
caryologia-232	57	48	the	the	DET
caryologia-232	57	49	p.	p.	NOUN
caryologia-232	57	50	trichocarpa	trichocarpa	NOUN
caryologia-232	57	51	genome	genome	NOUN
caryologia-232	57	52	sequence	sequence	NOUN
caryologia-232	57	53	(	(	PUNCT
caryologia-232	57	54	tuskan	tuskan	PROPN
caryologia-232	57	55	et	et	PROPN
caryologia-232	57	56	al	al	PROPN
caryologia-232	57	57	.	.	PROPN
caryologia-232	57	58	2006	2006	NUM
caryologia-232	57	59	;	;	PUNCT
caryologia-232	57	60	slavov	slavov	PROPN
caryologia-232	57	61	et	et	PROPN
caryologia-232	57	62	al	al	PROPN
caryologia-232	57	63	.	.	PROPN
caryologia-232	57	64	2012	2012	NUM
caryologia-232	57	65	)	)	PUNCT
caryologia-232	57	66	,	,	PUNCT
caryologia-232	57	67	deposited	deposit	VERB
caryologia-232	57	68	at	at	ADP
caryologia-232	57	69	the	the	DET
caryologia-232	57	70	ncbi	ncbi	PROPN
caryologia-232	57	71	site	site	NOUN
caryologia-232	57	72	(	(	PUNCT
caryologia-232	57	73	wgs	wgs	NOUN
caryologia-232	57	74	project	project	NOUN
caryologia-232	57	75	number	number	NOUN
caryologia-232	57	76	aarh02	aarh02	NOUN
caryologia-232	57	77	,	,	PUNCT
caryologia-232	57	78	http://www.ncbi.nlm.nih.gov/	http://www.ncbi.nlm.nih.gov/	PROPN
caryologia-232	57	79	assembly	assembly	PROPN
caryologia-232	57	80	/	/	SYM
caryologia-232	57	81	gcf_000002775.3	gcf_000002775.3	PROPN
caryologia-232	57	82	)	)	PUNCT
caryologia-232	57	83	.	.	PUNCT
caryologia-232	58	1	full	full	ADJ
caryologia-232	58	2	-	-	PUNCT
caryologia-232	58	3	length	length	NOUN
caryologia-232	58	4	ltr	ltr	NOUN
caryologia-232	58	5	-	-	PUNCT
caryologia-232	58	6	res	re	NOUN
caryologia-232	58	7	were	be	AUX
caryologia-232	58	8	isolated	isolate	VERB
caryologia-232	58	9	by	by	ADP
caryologia-232	58	10	using	use	VERB
caryologia-232	58	11	:	:	PUNCT
caryologia-232	58	12	i	i	NOUN
caryologia-232	58	13	)	)	PUNCT
caryologia-232	58	14	ltrharvest	ltrharv	ADJ
caryologia-232	58	15	(	(	PUNCT
caryologia-232	58	16	ellinghaus	ellinghaus	X
caryologia-232	58	17	et	et	PROPN
caryologia-232	58	18	al	al	PROPN
caryologia-232	58	19	.	.	PROPN
caryologia-232	58	20	2008	2008	NUM
caryologia-232	58	21	)	)	PUNCT
caryologia-232	58	22	with	with	ADP
caryologia-232	58	23	the	the	DET
caryologia-232	58	24	following	follow	VERB
caryologia-232	58	25	parameters	parameter	NOUN
caryologia-232	58	26	:	:	PUNCT
caryologia-232	58	27	minlenltr=100	minlenltr=100	NOUN
caryologia-232	58	28	,	,	PUNCT
caryologia-232	58	29	maxlenltr=6000	maxlenltr=6000	PROPN
caryologia-232	58	30	,	,	PUNCT
caryologia-232	58	31	mindistltr=1500	mindistltr=1500	PROPN
caryologia-232	58	32	,	,	PUNCT
caryologia-232	58	33	maxdistltr=25000	maxdistltr=25000	PROPN
caryologia-232	58	34	,	,	PUNCT
caryologia-232	58	35	mintsd=5	mintsd=5	PROPN
caryologia-232	58	36	,	,	PUNCT
caryologia-232	58	37	maxtsd=5	maxtsd=5	PROPN
caryologia-232	58	38	,	,	PUNCT
caryologia-232	58	39	similar=85	similar=85	ADJ
caryologia-232	58	40	,	,	PUNCT
caryologia-232	58	41	vic=10	vic=10	PROPN
caryologia-232	58	42	,	,	PUNCT
caryologia-232	58	43	including	include	VERB
caryologia-232	58	44	the	the	DET
caryologia-232	58	45	presence	presence	NOUN
caryologia-232	58	46	of	of	ADP
caryologia-232	58	47	tg	tg	PROPN
caryologia-232	58	48	and	and	CCONJ
caryologia-232	58	49	ca	can	AUX
caryologia-232	58	50	dinucleotides	dinucleotide	VERB
caryologia-232	58	51	at	at	ADP
caryologia-232	58	52	5	5	NUM
caryologia-232	58	53	’	'	PUNCT
caryologia-232	58	54	and	and	CCONJ
caryologia-232	58	55	3’-ends	3’-ends	NUM
caryologia-232	58	56	,	,	PUNCT
caryologia-232	58	57	respectively	respectively	ADV
caryologia-232	58	58	;	;	PUNCT
caryologia-232	58	59	ii	ii	X
caryologia-232	58	60	)	)	PUNCT
caryologia-232	58	61	ltr	ltr	ADJ
caryologia-232	58	62	-	-	PUNCT
caryologia-232	58	63	finder	finder	PROPN
caryologia-232	58	64	(	(	PUNCT
caryologia-232	58	65	xu	xu	INTJ
caryologia-232	58	66	et	et	PROPN
caryologia-232	58	67	al	al	PROPN
caryologia-232	58	68	.	.	PROPN
caryologia-232	58	69	2007	2007	NUM
caryologia-232	58	70	)	)	PUNCT
caryologia-232	58	71	,	,	PUNCT
caryologia-232	58	72	under	under	ADP
caryologia-232	58	73	default	default	NOUN
caryologia-232	58	74	.	.	PUNCT
caryologia-232	59	1	a	a	DET
caryologia-232	59	2	random	random	ADJ
caryologia-232	59	3	sample	sample	NOUN
caryologia-232	59	4	of	of	ADP
caryologia-232	59	5	putative	putative	ADJ
caryologia-232	59	6	ltr	ltr	ADJ
caryologia-232	59	7	-	-	PUNCT
caryologia-232	59	8	res	re	NOUN
caryologia-232	59	9	(	(	PUNCT
caryologia-232	59	10	around	around	ADP
caryologia-232	59	11	20	20	NUM
caryologia-232	59	12	%	%	NOUN
caryologia-232	59	13	of	of	ADP
caryologia-232	59	14	the	the	DET
caryologia-232	59	15	isolated	isolate	VERB
caryologia-232	59	16	elements	element	NOUN
caryologia-232	59	17	)	)	PUNCT
caryologia-232	59	18	were	be	AUX
caryologia-232	59	19	manually	manually	ADV
caryologia-232	59	20	validated	validate	VERB
caryologia-232	59	21	using	use	VERB
caryologia-232	59	22	dotter	dotter	NOUN
caryologia-232	59	23	(	(	PUNCT
caryologia-232	59	24	sonnhammer	sonnhammer	NOUN
caryologia-232	59	25	and	and	CCONJ
caryologia-232	59	26	durbin	durbin	ADJ
caryologia-232	59	27	1995	1995	NUM
caryologia-232	59	28	)	)	PUNCT
caryologia-232	59	29	to	to	PART
caryologia-232	59	30	verify	verify	VERB
caryologia-232	59	31	the	the	DET
caryologia-232	59	32	occurrence	occurrence	NOUN
caryologia-232	59	33	of	of	ADP
caryologia-232	59	34	the	the	DET
caryologia-232	59	35	two	two	NUM
caryologia-232	59	36	ltrs	ltr	NOUN
caryologia-232	59	37	,	,	PUNCT
caryologia-232	59	38	of	of	ADP
caryologia-232	59	39	dinucleotides	dinucleotide	NOUN
caryologia-232	59	40	tg	tg	PROPN
caryologia-232	59	41	and	and	CCONJ
caryologia-232	59	42	ca	can	AUX
caryologia-232	59	43	at	at	ADP
caryologia-232	59	44	the	the	DET
caryologia-232	59	45	respective	respective	ADJ
caryologia-232	59	46	5	5	NUM
caryologia-232	59	47	’	'	PUNCT
caryologia-232	59	48	and	and	CCONJ
caryologia-232	59	49	3	3	NUM
caryologia-232	59	50	’	'	PUNCT
caryologia-232	59	51	ends	end	VERB
caryologia-232	59	52	,	,	PUNCT
caryologia-232	59	53	and	and	CCONJ
caryologia-232	59	54	of	of	ADP
caryologia-232	59	55	the	the	DET
caryologia-232	59	56	tandem	tandem	NOUN
caryologia-232	59	57	site	site	NOUN
caryologia-232	59	58	duplications	duplication	NOUN
caryologia-232	59	59	.	.	PUNCT
caryologia-232	60	1	all	all	DET
caryologia-232	60	2	ltr	ltr	ADJ
caryologia-232	60	3	-	-	PUNCT
caryologia-232	60	4	res	re	NOUN
caryologia-232	60	5	were	be	AUX
caryologia-232	60	6	annotated	annotate	VERB
caryologia-232	60	7	by	by	ADP
caryologia-232	60	8	using	use	VERB
caryologia-232	60	9	blastn	blastn	ADJ
caryologia-232	60	10	search	search	NOUN
caryologia-232	60	11	against	against	ADP
caryologia-232	60	12	plant	plant	NOUN
caryologia-232	60	13	re	re	NOUN
caryologia-232	60	14	datasets	dataset	NOUN
caryologia-232	60	15	(	(	PUNCT
caryologia-232	60	16	barghini	barghini	PROPN
caryologia-232	60	17	et	et	PROPN
caryologia-232	60	18	al	al	PROPN
caryologia-232	60	19	.	.	PROPN
caryologia-232	60	20	2015b	2015b	NUM
caryologia-232	60	21	;	;	PUNCT
caryologia-232	60	22	natali	natali	PROPN
caryologia-232	60	23	et	et	PROPN
caryologia-232	60	24	al	al	PROPN
caryologia-232	60	25	.	.	PROPN
caryologia-232	60	26	2015	2015	NUM
caryologia-232	60	27	;	;	PUNCT
caryologia-232	60	28	usai	usai	VERB
caryologia-232	60	29	et	et	PROPN
caryologia-232	60	30	al	al	PROPN
caryologia-232	60	31	.	.	PROPN
caryologia-232	60	32	2017	2017	NUM
caryologia-232	60	33	;	;	PUNCT
caryologia-232	60	34	buti	buti	NOUN
caryologia-232	60	35	et	et	PROPN
caryologia-232	60	36	al	al	PROPN
caryologia-232	60	37	.	.	PROPN
caryologia-232	60	38	2018	2018	NUM
caryologia-232	60	39	)	)	PUNCT
caryologia-232	60	40	and	and	CCONJ
caryologia-232	60	41	by	by	ADP
caryologia-232	60	42	using	use	VERB
caryologia-232	60	43	the	the	DET
caryologia-232	60	44	domain	domain	NOUN
caryologia-232	60	45	search	search	NOUN
caryologia-232	60	46	tool	tool	NOUN
caryologia-232	60	47	of	of	ADP
caryologia-232	60	48	repeatexplorer	repeatexplorer	NOUN
caryologia-232	60	49	(	(	PUNCT
caryologia-232	60	50	novak	novak	PROPN
caryologia-232	60	51	et	et	PROPN
caryologia-232	60	52	al	al	PROPN
caryologia-232	60	53	.	.	PROPN
caryologia-232	60	54	2013	2013	NUM
caryologia-232	60	55	)	)	PUNCT
caryologia-232	60	56	.	.	PUNCT
caryologia-232	61	1	whenever	whenever	SCONJ
caryologia-232	61	2	possible	possible	ADJ
caryologia-232	61	3	,	,	PUNCT
caryologia-232	61	4	the	the	DET
caryologia-232	61	5	fulllength	fulllength	NOUN
caryologia-232	61	6	ltr	ltr	NOUN
caryologia-232	61	7	-	-	PUNCT
caryologia-232	61	8	res	re	NOUN
caryologia-232	61	9	were	be	AUX
caryologia-232	61	10	identified	identify	VERB
caryologia-232	61	11	as	as	ADP
caryologia-232	61	12	belonging	belong	VERB
caryologia-232	61	13	to	to	ADP
caryologia-232	61	14	gypsy	gypsy	NOUN
caryologia-232	61	15	or	or	CCONJ
caryologia-232	61	16	copia	copia	NOUN
caryologia-232	61	17	superfamilies	superfamily	NOUN
caryologia-232	61	18	and	and	CCONJ
caryologia-232	61	19	to	to	ADP
caryologia-232	61	20	the	the	DET
caryologia-232	61	21	respective	respective	ADJ
caryologia-232	61	22	lineages	lineage	NOUN
caryologia-232	61	23	.	.	PUNCT
caryologia-232	62	1	a	a	DET
caryologia-232	62	2	multi	multi	ADJ
caryologia-232	62	3	-	-	ADJ
caryologia-232	62	4	fasta	fasta	ADJ
caryologia-232	62	5	file	file	NOUN
caryologia-232	62	6	with	with	ADP
caryologia-232	62	7	the	the	DET
caryologia-232	62	8	sequences	sequence	NOUN
caryologia-232	62	9	of	of	ADP
caryologia-232	62	10	identified	identify	VERB
caryologia-232	62	11	full	full	ADJ
caryologia-232	62	12	-	-	PUNCT
caryologia-232	62	13	length	length	NOUN
caryologia-232	62	14	ltr	ltr	NOUN
caryologia-232	62	15	-	-	PUNCT
caryologia-232	62	16	res	re	NOUN
caryologia-232	62	17	is	be	AUX
caryologia-232	62	18	available	available	ADJ
caryologia-232	62	19	at	at	ADP
caryologia-232	62	20	the	the	DET
caryologia-232	62	21	sequence	sequence	NOUN
caryologia-232	62	22	repository	repository	NOUN
caryologia-232	62	23	site	site	NOUN
caryologia-232	62	24	of	of	ADP
caryologia-232	62	25	the	the	DET
caryologia-232	62	26	department	department	PROPN
caryologia-232	62	27	of	of	ADP
caryologia-232	62	28	agriculture	agriculture	PROPN
caryologia-232	62	29	,	,	PUNCT
caryologia-232	62	30	food	food	NOUN
caryologia-232	62	31	and	and	CCONJ
caryologia-232	62	32	environment	environment	NOUN
caryologia-232	62	33	of	of	ADP
caryologia-232	62	34	the	the	DET
caryologia-232	62	35	university	university	PROPN
caryologia-232	62	36	of	of	ADP
caryologia-232	62	37	pisa	pisa	PROPN
caryologia-232	62	38	(	(	PUNCT
caryologia-232	62	39	http://pgagl.agr	http://pgagl.agr	PROPN
caryologia-232	62	40	.	.	PUNCT
caryologia-232	63	1	unipi.it/sequence-repository/	unipi.it/sequence-repository/	PROPN
caryologia-232	63	2	)	)	PUNCT
caryologia-232	63	3	.	.	PUNCT
caryologia-232	64	1	illumina	illumina	PROPN
caryologia-232	64	2	cdna	cdna	PROPN
caryologia-232	64	3	libraries	libraries	PROPN
caryologia-232	64	4	collection	collection	VERB
caryologia-232	64	5	the	the	DET
caryologia-232	64	6	expression	expression	NOUN
caryologia-232	64	7	of	of	ADP
caryologia-232	64	8	ltr	ltr	ADJ
caryologia-232	64	9	-	-	PUNCT
caryologia-232	64	10	res	re	NOUN
caryologia-232	64	11	was	be	AUX
caryologia-232	64	12	analyzed	analyze	VERB
caryologia-232	64	13	using	use	VERB
caryologia-232	64	14	illumina	illumina	PROPN
caryologia-232	64	15	cdna	cdna	PROPN
caryologia-232	64	16	paired	pair	VERB
caryologia-232	64	17	-	-	PUNCT
caryologia-232	64	18	end	end	NOUN
caryologia-232	64	19	libraries	library	NOUN
caryologia-232	64	20	publicly	publicly	ADV
caryologia-232	64	21	available	available	ADJ
caryologia-232	64	22	at	at	ADP
caryologia-232	64	23	the	the	DET
caryologia-232	64	24	ncbi	ncbi	PROPN
caryologia-232	64	25	sra	sra	PROPN
caryologia-232	64	26	(	(	PUNCT
caryologia-232	64	27	https://www.ncbi.nlm.nih.gov/sra/	https://www.ncbi.nlm.nih.gov/sra/	PROPN
caryologia-232	64	28	,	,	PUNCT
caryologia-232	64	29	bioproject	bioproject	NOUN
caryologia-232	64	30	accession	accession	NOUN
caryologia-232	64	31	prjeb19784	prjeb19784	PROPN
caryologia-232	64	32	)	)	PUNCT
caryologia-232	64	33	(	(	PUNCT
caryologia-232	64	34	filichkin	filichkin	PROPN
caryologia-232	64	35	et	et	PROPN
caryologia-232	64	36	al	al	PROPN
caryologia-232	64	37	.	.	PROPN
caryologia-232	64	38	2018	2018	NUM
caryologia-232	64	39	)	)	PUNCT
caryologia-232	64	40	.	.	PUNCT
caryologia-232	65	1	such	such	ADJ
caryologia-232	65	2	cdna	cdna	PROPN
caryologia-232	65	3	libraries	library	NOUN
caryologia-232	65	4	were	be	AUX
caryologia-232	65	5	obtained	obtain	VERB
caryologia-232	65	6	from	from	ADP
caryologia-232	65	7	rnas	rna	NOUN
caryologia-232	65	8	from	from	ADP
caryologia-232	65	9	leaves	leave	NOUN
caryologia-232	65	10	of	of	ADP
caryologia-232	65	11	p.	p.	PROPN
caryologia-232	65	12	trichocarpa	trichocarpa	NOUN
caryologia-232	65	13	(	(	PUNCT
caryologia-232	65	14	clone	clone	NOUN
caryologia-232	65	15	nisqually	nisqually	NOUN
caryologia-232	65	16	1	1	NUM
caryologia-232	65	17	)	)	PUNCT
caryologia-232	65	18	plants	plant	NOUN
caryologia-232	65	19	exposed	expose	VERB
caryologia-232	65	20	to	to	ADP
caryologia-232	65	21	different	different	ADJ
caryologia-232	65	22	stresses	stress	NOUN
caryologia-232	65	23	,	,	PUNCT
caryologia-232	65	24	i.e.	i.e.	X
caryologia-232	65	25	,	,	PUNCT
caryologia-232	65	26	heat	heat	NOUN
caryologia-232	65	27	,	,	PUNCT
caryologia-232	65	28	cold	cold	ADJ
caryologia-232	65	29	,	,	PUNCT
caryologia-232	65	30	drought	drought	NOUN
caryologia-232	65	31	,	,	PUNCT
caryologia-232	65	32	and	and	CCONJ
caryologia-232	65	33	salt	salt	NOUN
caryologia-232	65	34	.	.	PUNCT
caryologia-232	66	1	all	all	DET
caryologia-232	66	2	cultivation	cultivation	NOUN
caryologia-232	66	3	conditions	condition	NOUN
caryologia-232	66	4	are	be	AUX
caryologia-232	66	5	described	describe	VERB
caryologia-232	66	6	by	by	ADP
caryologia-232	66	7	filichkin	filichkin	PROPN
caryologia-232	66	8	et	et	PROPN
caryologia-232	66	9	al	al	PROPN
caryologia-232	66	10	.	.	PROPN
caryologia-232	67	1	(	(	PUNCT
caryologia-232	67	2	2018	2018	NUM
caryologia-232	67	3	)	)	PUNCT
caryologia-232	67	4	.	.	PUNCT
caryologia-232	68	1	in	in	ADP
caryologia-232	68	2	brief	brief	NOUN
caryologia-232	68	3	,	,	PUNCT
caryologia-232	68	4	for	for	ADP
caryologia-232	68	5	heat	heat	NOUN
caryologia-232	68	6	stress	stress	NOUN
caryologia-232	68	7	,	,	PUNCT
caryologia-232	68	8	plants	plant	NOUN
caryologia-232	68	9	were	be	AUX
caryologia-232	68	10	treated	treat	VERB
caryologia-232	68	11	at	at	ADP
caryologia-232	68	12	39	39	NUM
caryologia-232	68	13	°	°	NOUN
caryologia-232	68	14	c	c	NOUN
caryologia-232	68	15	for	for	ADP
caryologia-232	68	16	12	12	NUM
caryologia-232	68	17	h	h	NOUN
caryologia-232	68	18	(	(	PUNCT
caryologia-232	68	19	short	short	ADJ
caryologia-232	68	20	treatment	treatment	NOUN
caryologia-232	68	21	)	)	PUNCT
caryologia-232	68	22	or	or	CCONJ
caryologia-232	68	23	7	7	NUM
caryologia-232	68	24	days	day	NOUN
caryologia-232	68	25	(	(	PUNCT
caryologia-232	68	26	prolonged	prolonged	ADJ
caryologia-232	68	27	treatment	treatment	NOUN
caryologia-232	68	28	)	)	PUNCT
caryologia-232	68	29	.	.	PUNCT
caryologia-232	69	1	for	for	ADP
caryologia-232	69	2	cold	cold	ADJ
caryologia-232	69	3	stress	stress	NOUN
caryologia-232	69	4	,	,	PUNCT
caryologia-232	69	5	plants	plant	NOUN
caryologia-232	69	6	were	be	AUX
caryologia-232	69	7	exposed	expose	VERB
caryologia-232	69	8	to	to	ADP
caryologia-232	69	9	cycles	cycle	NOUN
caryologia-232	69	10	of	of	ADP
caryologia-232	69	11	4	4	NUM
caryologia-232	69	12	°	°	ADP
caryologia-232	69	13	c	c	NOUN
caryologia-232	69	14	(	(	PUNCT
caryologia-232	69	15	night)/12	night)/12	PROPN
caryologia-232	69	16	°	°	ADP
caryologia-232	69	17	c	c	NOUN
caryologia-232	69	18	(	(	PUNCT
caryologia-232	69	19	day	day	NOUN
caryologia-232	69	20	)	)	PUNCT
caryologia-232	69	21	for	for	ADP
caryologia-232	69	22	24	24	NUM
caryologia-232	69	23	h	h	NOUN
caryologia-232	69	24	(	(	PUNCT
caryologia-232	69	25	short	short	ADJ
caryologia-232	69	26	treatment	treatment	NOUN
caryologia-232	69	27	)	)	PUNCT
caryologia-232	69	28	or	or	CCONJ
caryologia-232	69	29	7	7	NUM
caryologia-232	69	30	days	day	NOUN
caryologia-232	69	31	(	(	PUNCT
caryologia-232	69	32	prolonged	prolonged	ADJ
caryologia-232	69	33	treatment	treatment	NOUN
caryologia-232	69	34	)	)	PUNCT
caryologia-232	69	35	.	.	PUNCT
caryologia-232	70	1	for	for	ADP
caryologia-232	70	2	drought	drought	NOUN
caryologia-232	70	3	treatment	treatment	NOUN
caryologia-232	70	4	,	,	PUNCT
caryologia-232	70	5	watering	watering	NOUN
caryologia-232	70	6	was	be	AUX
caryologia-232	70	7	withheld	withhold	VERB
caryologia-232	70	8	until	until	SCONJ
caryologia-232	70	9	soil	soil	NOUN
caryologia-232	70	10	moisture	moisture	NOUN
caryologia-232	70	11	reached	reach	VERB
caryologia-232	70	12	0.1	0.1	NUM
caryologia-232	70	13	m3	m3	PROPN
caryologia-232	70	14	/	/	SYM
caryologia-232	70	15	m3	m3	PROPN
caryologia-232	70	16	and	and	CCONJ
caryologia-232	70	17	maintained	maintain	VERB
caryologia-232	70	18	at	at	ADP
caryologia-232	70	19	the	the	DET
caryologia-232	70	20	level	level	NOUN
caryologia-232	70	21	of	of	ADP
caryologia-232	70	22	0.06	0.06	NUM
caryologia-232	70	23	–	–	SYM
caryologia-232	70	24	0.1	0.1	NUM
caryologia-232	70	25	m3	m3	PROPN
caryologia-232	70	26	/	/	SYM
caryologia-232	70	27	m3	m3	PROPN
caryologia-232	70	28	for	for	ADP
caryologia-232	70	29	5	5	NUM
caryologia-232	70	30	days	day	NOUN
caryologia-232	70	31	(	(	PUNCT
caryologia-232	70	32	short	short	ADJ
caryologia-232	70	33	treatment	treatment	NOUN
caryologia-232	70	34	)	)	PUNCT
caryologia-232	70	35	or	or	CCONJ
caryologia-232	70	36	for	for	ADP
caryologia-232	70	37	12	12	NUM
caryologia-232	70	38	days	day	NOUN
caryologia-232	70	39	after	after	ADP
caryologia-232	70	40	water	water	NOUN
caryologia-232	70	41	withholding	withholding	NOUN
caryologia-232	70	42	(	(	PUNCT
caryologia-232	70	43	prolonged	prolonged	ADJ
caryologia-232	70	44	treatment	treatment	NOUN
caryologia-232	70	45	)	)	PUNCT
caryologia-232	70	46	.	.	PUNCT
caryologia-232	71	1	for	for	ADP
caryologia-232	71	2	salt	salt	NOUN
caryologia-232	71	3	stress	stress	NOUN
caryologia-232	71	4	,	,	PUNCT
caryologia-232	71	5	plants	plant	NOUN
caryologia-232	71	6	were	be	AUX
caryologia-232	71	7	irrigated	irrigate	VERB
caryologia-232	71	8	with	with	ADP
caryologia-232	71	9	100	100	NUM
caryologia-232	71	10	mm	mm	NOUN
caryologia-232	71	11	nacl	nacl	NOUN
caryologia-232	71	12	solution	solution	NOUN
caryologia-232	71	13	for	for	ADP
caryologia-232	71	14	24	24	NUM
caryologia-232	71	15	h	h	NOUN
caryologia-232	71	16	(	(	PUNCT
caryologia-232	71	17	short	short	ADJ
caryologia-232	71	18	treatment	treatment	NOUN
caryologia-232	71	19	)	)	PUNCT
caryologia-232	71	20	or	or	CCONJ
caryologia-232	71	21	for	for	ADP
caryologia-232	71	22	7	7	NUM
caryologia-232	71	23	days	day	NOUN
caryologia-232	71	24	(	(	PUNCT
caryologia-232	71	25	prolonged	prolonged	ADJ
caryologia-232	71	26	treatment	treatment	NOUN
caryologia-232	71	27	)	)	PUNCT
caryologia-232	71	28	.	.	PUNCT
caryologia-232	72	1	three	three	NUM
caryologia-232	72	2	replicate	replicate	ADJ
caryologia-232	72	3	libraries	library	NOUN
caryologia-232	72	4	were	be	AUX
caryologia-232	72	5	downloaded	download	VERB
caryologia-232	72	6	for	for	ADP
caryologia-232	72	7	each	each	DET
caryologia-232	72	8	stress	stress	NOUN
caryologia-232	72	9	and	and	CCONJ
caryologia-232	72	10	control	control	NOUN
caryologia-232	72	11	plants	plant	NOUN
caryologia-232	72	12	.	.	PUNCT
caryologia-232	73	1	illumina	illumina	PROPN
caryologia-232	73	2	genomic	genomic	PROPN
caryologia-232	73	3	dna	dna	PROPN
caryologia-232	73	4	sequences	sequence	NOUN
caryologia-232	73	5	of	of	ADP
caryologia-232	73	6	the	the	DET
caryologia-232	73	7	same	same	ADJ
caryologia-232	73	8	clone	clone	NOUN
caryologia-232	73	9	of	of	ADP
caryologia-232	73	10	p.	p.	PROPN
caryologia-232	73	11	trichocarpa	trichocarpa	PROPN
caryologia-232	73	12	were	be	AUX
caryologia-232	73	13	retrieved	retrieve	VERB
caryologia-232	73	14	from	from	ADP
caryologia-232	73	15	the	the	DET
caryologia-232	73	16	ncbi	ncbi	PROPN
caryologia-232	73	17	sequence	sequence	NOUN
caryologia-232	73	18	read	read	VERB
caryologia-232	73	19	archive	archive	NOUN
caryologia-232	73	20	(	(	PUNCT
caryologia-232	73	21	ncbi	ncbi	PROPN
caryologia-232	73	22	,	,	PUNCT
caryologia-232	73	23	washington	washington	PROPN
caryologia-232	73	24	,	,	PUNCT
caryologia-232	73	25	usa	usa	PROPN
caryologia-232	73	26	,	,	PUNCT
caryologia-232	73	27	https://www	https://www	PROPN
caryologia-232	73	28	.	.	PUNCT
caryologia-232	74	1	ncbi.nlm.nih.gov/sra	ncbi.nlm.nih.gov/sra	PROPN
caryologia-232	74	2	,	,	PUNCT
caryologia-232	74	3	sra	sra	PROPN
caryologia-232	74	4	i	i	PROPN
caryologia-232	74	5	d	d	PROPN
caryologia-232	74	6	srr1801106	srr1801106	NOUN
caryologia-232	74	7	)	)	PUNCT
caryologia-232	74	8	.	.	PUNCT
caryologia-232	75	1	the	the	DET
caryologia-232	75	2	quality	quality	NOUN
caryologia-232	75	3	of	of	ADP
caryologia-232	75	4	the	the	DET
caryologia-232	75	5	cdna	cdna	PROPN
caryologia-232	75	6	and	and	CCONJ
caryologia-232	75	7	genomic	genomic	PROPN
caryologia-232	75	8	dna	dna	PROPN
caryologia-232	75	9	reads	read	NOUN
caryologia-232	75	10	was	be	AUX
caryologia-232	75	11	checked	check	VERB
caryologia-232	75	12	using	use	VERB
caryologia-232	75	13	fastqc	fastqc	PROPN
caryologia-232	75	14	(	(	PUNCT
caryologia-232	75	15	v.	v.	PROPN
caryologia-232	75	16	0.11.3	0.11.3	PROPN
caryologia-232	75	17	)	)	PUNCT
caryologia-232	75	18	(	(	PUNCT
caryologia-232	75	19	http://www.bioinformatics.babraham.ac.uk/projects/fastqc/	http://www.bioinformatics.babraham.ac.uk/projects/fastqc/	ADV
caryologia-232	75	20	)	)	PUNCT
caryologia-232	75	21	,	,	PUNCT
caryologia-232	75	22	and	and	CCONJ
caryologia-232	75	23	the	the	DET
caryologia-232	75	24	overall	overall	ADJ
caryologia-232	75	25	quality	quality	NOUN
caryologia-232	75	26	was	be	AUX
caryologia-232	75	27	improved	improve	VERB
caryologia-232	75	28	by	by	ADP
caryologia-232	75	29	removing	remove	VERB
caryologia-232	75	30	illumina	illumina	ADJ
caryologia-232	75	31	adapters	adapter	NOUN
caryologia-232	75	32	and	and	CCONJ
caryologia-232	75	33	trimming	trim	VERB
caryologia-232	75	34	the	the	DET
caryologia-232	75	35	reads	read	NOUN
caryologia-232	75	36	using	use	VERB
caryologia-232	75	37	trimmomatic	trimmomatic	PROPN
caryologia-232	75	38	(	(	PUNCT
caryologia-232	75	39	v.	v.	ADV
caryologia-232	75	40	0.38	0.38	NUM
caryologia-232	75	41	)	)	PUNCT
caryologia-232	75	42	(	(	PUNCT
caryologia-232	75	43	bolger	bolger	NOUN
caryologia-232	75	44	et	et	PROPN
caryologia-232	75	45	al	al	PROPN
caryologia-232	75	46	.	.	PROPN
caryologia-232	75	47	,	,	PUNCT
caryologia-232	75	48	2014	2014	NUM
caryologia-232	75	49	)	)	PUNCT
caryologia-232	75	50	with	with	ADP
caryologia-232	75	51	different	different	ADJ
caryologia-232	75	52	parameters	parameter	NOUN
caryologia-232	75	53	for	for	ADP
caryologia-232	75	54	cdna	cdna	PROPN
caryologia-232	75	55	(	(	PUNCT
caryologia-232	75	56	illuminaclip:2:30:10	illuminaclip:2:30:10	NOUN
caryologia-232	75	57	,	,	PUNCT
caryologia-232	75	58	slidingwindow:4:20	slidingwindow:4:20	PROPN
caryologia-232	75	59	,	,	PUNCT
caryologia-232	75	60	crop:96	crop:96	PROPN
caryologia-232	75	61	,	,	PUNCT
caryologia-232	75	62	headcrop:12	headcrop:12	X
caryologia-232	75	63	and	and	CCONJ
caryologia-232	75	64	minlen:90	minlen:90	NOUN
caryologia-232	75	65	)	)	PUNCT
caryologia-232	75	66	and	and	CCONJ
caryologia-232	75	67	genomic	genomic	ADJ
caryologia-232	75	68	dna	dna	NOUN
caryologia-232	75	69	(	(	PUNCT
caryologia-232	75	70	illuminaclip:2:30:10	illuminaclip:2:30:10	NOUN
caryologia-232	75	71	,	,	PUNCT
caryologia-232	75	72	slidingwindow:4:15	slidingwindow:4:15	NOUN
caryologia-232	75	73	,	,	PUNCT
caryologia-232	75	74	crop:85	crop:85	PROPN
caryologia-232	75	75	,	,	PUNCT
caryologia-232	75	76	minlen:85	minlen:85	NUM
caryologia-232	75	77	)	)	PUNCT
caryologia-232	75	78	.	.	PUNCT
caryologia-232	76	1	organellar	organellar	ADJ
caryologia-232	76	2	sequences	sequence	NOUN
caryologia-232	76	3	were	be	AUX
caryologia-232	76	4	removed	remove	VERB
caryologia-232	76	5	from	from	ADP
caryologia-232	76	6	the	the	DET
caryologia-232	76	7	illumina	illumina	PROPN
caryologia-232	76	8	libraries	library	NOUN
caryologia-232	76	9	by	by	ADP
caryologia-232	76	10	mapping	map	VERB
caryologia-232	76	11	against	against	ADP
caryologia-232	76	12	a	a	DET
caryologia-232	76	13	database	database	NOUN
caryologia-232	76	14	of	of	ADP
caryologia-232	76	15	chloroplast	chloroplast	ADJ
caryologia-232	76	16	genomes	genome	NOUN
caryologia-232	76	17	of	of	ADP
caryologia-232	76	18	poplar	poplar	ADJ
caryologia-232	76	19	species	specie	NOUN
caryologia-232	76	20	(	(	PUNCT
caryologia-232	76	21	usai	usai	VERB
caryologia-232	76	22	et	et	PROPN
caryologia-232	76	23	al	al	PROPN
caryologia-232	76	24	.	.	PROPN
caryologia-232	76	25	2017	2017	NUM
caryologia-232	76	26	)	)	PUNCT
caryologia-232	76	27	using	use	VERB
caryologia-232	76	28	clcbio	clcbio	NOUN
caryologia-232	76	29	genomicworkbench	genomicworkbench	NOUN
caryologia-232	76	30	(	(	PUNCT
caryologia-232	76	31	v.	v.	ADP
caryologia-232	76	32	9.5.3	9.5.3	NUM
caryologia-232	76	33	,	,	PUNCT
caryologia-232	76	34	clc	clc	PROPN
caryologia-232	76	35	-	-	PUNCT
caryologia-232	76	36	bio	bio	PROPN
caryologia-232	76	37	,	,	PUNCT
caryologia-232	76	38	aarhus	aarhus	PROPN
caryologia-232	76	39	,	,	PUNCT
caryologia-232	76	40	denmark	denmark	NOUN
caryologia-232	76	41	)	)	PUNCT
caryologia-232	76	42	with	with	ADP
caryologia-232	76	43	the	the	DET
caryologia-232	76	44	following	follow	VERB
caryologia-232	76	45	parameters	parameter	NOUN
caryologia-232	76	46	:	:	PUNCT
caryologia-232	76	47	mismatch	mismatch	NOUN
caryologia-232	76	48	cost	cost	NOUN
caryologia-232	76	49	2	2	NUM
caryologia-232	76	50	,	,	PUNCT
caryologia-232	76	51	insertion	insertion	NOUN
caryologia-232	76	52	cost	cost	NOUN
caryologia-232	76	53	3	3	NUM
caryologia-232	76	54	,	,	PUNCT
caryologia-232	76	55	deletion	deletion	NOUN
caryologia-232	76	56	cost	cost	NOUN
caryologia-232	76	57	3	3	NUM
caryologia-232	76	58	,	,	PUNCT
caryologia-232	76	59	length	length	NOUN
caryologia-232	76	60	fraction	fraction	NOUN
caryologia-232	76	61	0.5	0.5	NUM
caryologia-232	76	62	,	,	PUNCT
caryologia-232	76	63	similarity	similarity	NOUN
caryologia-232	76	64	fraction	fraction	NOUN
caryologia-232	76	65	0.8	0.8	NUM
caryologia-232	76	66	.	.	PUNCT
caryologia-232	77	1	all	all	DET
caryologia-232	77	2	matching	match	VERB
caryologia-232	77	3	reads	read	NOUN
caryologia-232	77	4	were	be	AUX
caryologia-232	77	5	considered	consider	VERB
caryologia-232	77	6	putatively	putatively	ADV
caryologia-232	77	7	belonging	belong	VERB
caryologia-232	77	8	to	to	ADP
caryologia-232	77	9	organellar	organellar	ADJ
caryologia-232	77	10	genomes	genome	NOUN
caryologia-232	77	11	and	and	CCONJ
caryologia-232	77	12	removed	remove	VERB
caryologia-232	77	13	.	.	PUNCT
caryologia-232	78	1	estimation	estimation	NOUN
caryologia-232	78	2	of	of	ADP
caryologia-232	78	3	retrotransposon	retrotransposon	NOUN
caryologia-232	78	4	expression	expression	NOUN
caryologia-232	78	5	and	and	CCONJ
caryologia-232	78	6	abundance	abundance	NOUN
caryologia-232	78	7	in	in	ADP
caryologia-232	78	8	the	the	DET
caryologia-232	78	9	genome	genome	NOUN
caryologia-232	78	10	the	the	DET
caryologia-232	78	11	expression	expression	NOUN
caryologia-232	78	12	of	of	ADP
caryologia-232	78	13	ltr	ltr	NOUN
caryologia-232	78	14	-	-	PUNCT
caryologia-232	78	15	res	re	NOUN
caryologia-232	78	16	was	be	AUX
caryologia-232	78	17	measured	measure	VERB
caryologia-232	78	18	mapping	mapping	NOUN
caryologia-232	78	19	cdna	cdna	NOUN
caryologia-232	78	20	sequence	sequence	NOUN
caryologia-232	78	21	reads	read	NOUN
caryologia-232	78	22	of	of	ADP
caryologia-232	78	23	control	control	NOUN
caryologia-232	78	24	and	and	CCONJ
caryologia-232	78	25	cold-	cold-	X
caryologia-232	78	26	,	,	PUNCT
caryologia-232	78	27	drought-	drought-	PROPN
caryologia-232	78	28	,	,	PUNCT
caryologia-232	78	29	heat-	heat-	NOUN
caryologia-232	78	30	,	,	PUNCT
caryologia-232	78	31	or	or	CCONJ
caryologia-232	78	32	salt	salt	NOUN
caryologia-232	78	33	-	-	PUNCT
caryologia-232	78	34	exposed	expose	VERB
caryologia-232	78	35	leaves	leave	NOUN
caryologia-232	78	36	onto	onto	ADP
caryologia-232	78	37	the	the	DET
caryologia-232	78	38	library	library	NOUN
caryologia-232	78	39	of	of	ADP
caryologia-232	78	40	p.	p.	PROPN
caryologia-232	78	41	trichocarpa	trichocarpa	NOUN
caryologia-232	78	42	full	full	ADJ
caryologia-232	78	43	-	-	PUNCT
caryologia-232	78	44	length	length	NOUN
caryologia-232	78	45	ltr	ltr	NOUN
caryologia-232	78	46	-	-	PUNCT
caryologia-232	78	47	res	re	NOUN
caryologia-232	78	48	,	,	PUNCT
caryologia-232	78	49	using	use	VERB
caryologia-232	78	50	clc	clc	PROPN
caryologia-232	78	51	-	-	PUNCT
caryologia-232	78	52	bio	bio	NOUN
caryologia-232	78	53	genomic	genomic	ADJ
caryologia-232	78	54	workbench	workbench	NOUN
caryologia-232	78	55	with	with	ADP
caryologia-232	78	56	the	the	DET
caryologia-232	78	57	following	follow	VERB
caryologia-232	78	58	parameters	parameter	NOUN
caryologia-232	78	59	:	:	PUNCT
caryologia-232	78	60	mismatch	mismatch	NOUN
caryologia-232	78	61	cost	cost	NOUN
caryologia-232	78	62	1	1	NUM
caryologia-232	78	63	,	,	PUNCT
caryologia-232	78	64	deletion	deletion	NOUN
caryologia-232	78	65	cost	cost	NOUN
caryologia-232	78	66	1	1	NUM
caryologia-232	78	67	,	,	PUNCT
caryologia-232	78	68	insertion	insertion	NOUN
caryologia-232	78	69	cost	cost	NOUN
caryologia-232	78	70	1	1	NUM
caryologia-232	78	71	,	,	PUNCT
caryologia-232	78	72	similarity	similarity	NOUN
caryologia-232	78	73	0.9	0.9	NUM
caryologia-232	78	74	and	and	CCONJ
caryologia-232	78	75	length	length	NOUN
caryologia-232	78	76	fraction	fraction	NOUN
caryologia-232	78	77	0.9	0.9	NUM
caryologia-232	78	78	.	.	PUNCT
caryologia-232	79	1	the	the	DET
caryologia-232	79	2	expression	expression	NOUN
caryologia-232	79	3	level	level	NOUN
caryologia-232	79	4	of	of	ADP
caryologia-232	79	5	each	each	DET
caryologia-232	79	6	sequence	sequence	NOUN
caryologia-232	79	7	was	be	AUX
caryologia-232	79	8	calculated	calculate	VERB
caryologia-232	79	9	and	and	CCONJ
caryologia-232	79	10	converted	convert	VERB
caryologia-232	79	11	both	both	PRON
caryologia-232	79	12	to	to	ADP
caryologia-232	79	13	mapped	map	VERB
caryologia-232	79	14	reads	read	NOUN
caryologia-232	79	15	per	per	ADP
caryologia-232	79	16	million	million	NUM
caryologia-232	79	17	(	(	PUNCT
caryologia-232	79	18	mrpm	mrpm	ADJ
caryologia-232	79	19	)	)	PUNCT
caryologia-232	79	20	and	and	CCONJ
caryologia-232	79	21	to	to	PART
caryologia-232	79	22	rpkm	rpkm	VERB
caryologia-232	79	23	(	(	PUNCT
caryologia-232	79	24	mortazavi	mortazavi	VERB
caryologia-232	79	25	et	et	PROPN
caryologia-232	79	26	al	al	PROPN
caryologia-232	79	27	.	.	PROPN
caryologia-232	79	28	2008	2008	NUM
caryologia-232	79	29	)	)	PUNCT
caryologia-232	79	30	.	.	PUNCT
caryologia-232	80	1	ltr	ltr	ADJ
caryologia-232	80	2	-	-	PUNCT
caryologia-232	80	3	res	re	NOUN
caryologia-232	80	4	mapped	map	VERB
caryologia-232	80	5	by	by	ADP
caryologia-232	80	6	1	1	NUM
caryologia-232	80	7	to	to	PART
caryologia-232	80	8	10	10	NUM
caryologia-232	80	9	reads	read	NOUN
caryologia-232	80	10	per	per	ADP
caryologia-232	80	11	million	million	NUM
caryologia-232	80	12	of	of	ADP
caryologia-232	80	13	reads	read	NOUN
caryologia-232	80	14	in	in	ADP
caryologia-232	80	15	at	at	ADV
caryologia-232	80	16	least	least	ADV
caryologia-232	80	17	one	one	NUM
caryologia-232	80	18	sample	sample	NOUN
caryologia-232	80	19	were	be	AUX
caryologia-232	80	20	considered	consider	VERB
caryologia-232	80	21	as	as	SCONJ
caryologia-232	80	22	expressed	express	VERB
caryologia-232	80	23	(	(	PUNCT
caryologia-232	80	24	lu	lu	INTJ
caryologia-232	80	25	et	et	PROPN
caryologia-232	80	26	al	al	PROPN
caryologia-232	80	27	.	.	PROPN
caryologia-232	80	28	2013	2013	NUM
caryologia-232	80	29	)	)	PUNCT
caryologia-232	80	30	,	,	PUNCT
caryologia-232	80	31	those	those	PRON
caryologia-232	80	32	mapped	map	VERB
caryologia-232	80	33	by	by	ADP
caryologia-232	80	34	at	at	ADV
caryologia-232	80	35	least	least	ADV
caryologia-232	80	36	10	10	NUM
caryologia-232	80	37	reads	read	NOUN
caryologia-232	80	38	per	per	ADP
caryologia-232	80	39	million	million	NUM
caryologia-232	80	40	were	be	AUX
caryologia-232	80	41	considered	consider	VERB
caryologia-232	80	42	as	as	ADV
caryologia-232	80	43	highly	highly	ADV
caryologia-232	80	44	expressed	express	VERB
caryologia-232	80	45	.	.	PUNCT
caryologia-232	81	1	expression	expression	NOUN
caryologia-232	81	2	values	value	NOUN
caryologia-232	81	3	were	be	AUX
caryologia-232	81	4	compared	compare	VERB
caryologia-232	81	5	,	,	PUNCT
caryologia-232	81	6	using	use	VERB
caryologia-232	81	7	baggerley	baggerley	PROPN
caryologia-232	81	8	’s	’s	PART
caryologia-232	81	9	test	test	NOUN
caryologia-232	81	10	(	(	PUNCT
caryologia-232	81	11	baggerley	baggerley	PROPN
caryologia-232	81	12	et	et	PROPN
caryologia-232	81	13	al	al	PROPN
caryologia-232	81	14	.	.	PROPN
caryologia-232	81	15	2003	2003	NUM
caryologia-232	81	16	)	)	PUNCT
caryologia-232	81	17	,	,	PUNCT
caryologia-232	81	18	considering	consider	VERB
caryologia-232	81	19	rpkm	rpkm	NOUN
caryologia-232	81	20	values	value	NOUN
caryologia-232	81	21	in	in	ADP
caryologia-232	81	22	the	the	DET
caryologia-232	81	23	short	short	ADJ
caryologia-232	81	24	and	and	CCONJ
caryologia-232	81	25	prolonged	prolonged	ADJ
caryologia-232	81	26	stage	stage	NOUN
caryologia-232	81	27	of	of	ADP
caryologia-232	81	28	each	each	DET
caryologia-232	81	29	treatment	treatment	NOUN
caryologia-232	81	30	in	in	ADP
caryologia-232	81	31	comparison	comparison	NOUN
caryologia-232	81	32	to	to	ADP
caryologia-232	81	33	control	control	NOUN
caryologia-232	81	34	leaves	leave	NOUN
caryologia-232	81	35	.	.	PUNCT
caryologia-232	82	1	the	the	DET
caryologia-232	82	2	weighted	weight	VERB
caryologia-232	82	3	proportion	proportion	NOUN
caryologia-232	82	4	fold	fold	NOUN
caryologia-232	82	5	changes	change	NOUN
caryologia-232	82	6	between	between	ADP
caryologia-232	82	7	a	a	DET
caryologia-232	82	8	treatment	treatment	NOUN
caryologia-232	82	9	and	and	CCONJ
caryologia-232	82	10	controls	control	NOUN
caryologia-232	82	11	were	be	AUX
caryologia-232	82	12	considered	consider	VERB
caryologia-232	82	13	significant	significant	ADJ
caryologia-232	82	14	when	when	SCONJ
caryologia-232	82	15	the	the	DET
caryologia-232	82	16	weight	weight	NOUN
caryologia-232	82	17	of	of	ADP
caryologia-232	82	18	a	a	DET
caryologia-232	82	19	sample	sample	NOUN
caryologia-232	82	20	was	be	AUX
caryologia-232	82	21	at	at	ADV
caryologia-232	82	22	least	least	ADJ
caryologia-232	82	23	two	two	NUM
caryologia-232	82	24	-	-	PUNCT
caryologia-232	82	25	fold	fold	VERB
caryologia-232	82	26	higher	high	ADJ
caryologia-232	82	27	or	or	CCONJ
caryologia-232	82	28	lower	low	ADJ
caryologia-232	82	29	than	than	ADP
caryologia-232	82	30	another	another	PRON
caryologia-232	82	31	,	,	PUNCT
caryologia-232	82	32	with	with	ADP
caryologia-232	82	33	a	a	DET
caryologia-232	82	34	false	false	ADJ
caryologia-232	82	35	dis72	dis72	NOUN
caryologia-232	82	36	alberto	alberto	PROPN
caryologia-232	82	37	vangelisti	vangelisti	PROPN
caryologia-232	82	38	et	et	PROPN
caryologia-232	82	39	al	al	PROPN
caryologia-232	82	40	.	.	PROPN
caryologia-232	82	41	covery	covery	NOUN
caryologia-232	82	42	rate	rate	NOUN
caryologia-232	82	43	(	(	PUNCT
caryologia-232	82	44	fdr	fdr	PROPN
caryologia-232	82	45	;	;	PUNCT
caryologia-232	82	46	benjamini	benjamini	NOUN
caryologia-232	82	47	and	and	CCONJ
caryologia-232	82	48	hochberg	hochberg	NOUN
caryologia-232	82	49	,	,	PUNCT
caryologia-232	82	50	1995	1995	NUM
caryologia-232	82	51	)	)	PUNCT
caryologia-232	82	52	corrected	correct	VERB
caryologia-232	82	53	p	p	NOUN
caryologia-232	82	54	-	-	PUNCT
caryologia-232	82	55	value	value	NOUN
caryologia-232	82	56	≤	≤	NOUN
caryologia-232	82	57	0.05	0.05	NUM
caryologia-232	82	58	.	.	PUNCT
caryologia-232	83	1	in	in	ADP
caryologia-232	83	2	order	order	NOUN
caryologia-232	83	3	to	to	PART
caryologia-232	83	4	assess	assess	VERB
caryologia-232	83	5	genomic	genomic	ADJ
caryologia-232	83	6	abundance	abundance	NOUN
caryologia-232	83	7	of	of	ADP
caryologia-232	83	8	res	re	NOUN
caryologia-232	83	9	,	,	PUNCT
caryologia-232	83	10	genomic	genomic	NOUN
caryologia-232	83	11	dna	dna	NOUN
caryologia-232	83	12	reads	read	NOUN
caryologia-232	83	13	of	of	ADP
caryologia-232	83	14	p.	p.	PROPN
caryologia-232	83	15	trichocarpa	trichocarpa	PROPN
caryologia-232	83	16	were	be	AUX
caryologia-232	83	17	mapped	map	VERB
caryologia-232	83	18	onto	onto	ADP
caryologia-232	83	19	reference	reference	NOUN
caryologia-232	83	20	retrotransposon	retrotransposon	NOUN
caryologia-232	83	21	domains	domain	NOUN
caryologia-232	83	22	library	library	NOUN
caryologia-232	83	23	using	use	VERB
caryologia-232	83	24	clcbio	clcbio	NOUN
caryologia-232	83	25	genomics	genomics	NOUN
caryologia-232	83	26	workbench	workbench	NOUN
caryologia-232	83	27	with	with	ADP
caryologia-232	83	28	the	the	DET
caryologia-232	83	29	same	same	ADJ
caryologia-232	83	30	parameters	parameter	NOUN
caryologia-232	83	31	described	describe	VERB
caryologia-232	83	32	above	above	ADV
caryologia-232	83	33	.	.	PUNCT
caryologia-232	84	1	for	for	ADP
caryologia-232	84	2	each	each	DET
caryologia-232	84	3	ltr	ltr	NOUN
caryologia-232	84	4	-	-	PUNCT
caryologia-232	84	5	re	re	NOUN
caryologia-232	84	6	the	the	DET
caryologia-232	84	7	average	average	ADJ
caryologia-232	84	8	coverage	coverage	NOUN
caryologia-232	84	9	was	be	AUX
caryologia-232	84	10	calculated	calculate	VERB
caryologia-232	84	11	.	.	PUNCT
caryologia-232	85	1	the	the	DET
caryologia-232	85	2	average	average	ADJ
caryologia-232	85	3	coverage	coverage	NOUN
caryologia-232	85	4	is	be	AUX
caryologia-232	85	5	the	the	DET
caryologia-232	85	6	sum	sum	NOUN
caryologia-232	85	7	of	of	ADP
caryologia-232	85	8	the	the	DET
caryologia-232	85	9	bases	basis	NOUN
caryologia-232	85	10	of	of	ADP
caryologia-232	85	11	the	the	DET
caryologia-232	85	12	aligned	aligned	ADJ
caryologia-232	85	13	parts	part	NOUN
caryologia-232	85	14	of	of	ADP
caryologia-232	85	15	all	all	DET
caryologia-232	85	16	the	the	DET
caryologia-232	85	17	reads	read	NOUN
caryologia-232	85	18	divided	divide	VERB
caryologia-232	85	19	by	by	ADP
caryologia-232	85	20	the	the	DET
caryologia-232	85	21	length	length	NOUN
caryologia-232	85	22	of	of	ADP
caryologia-232	85	23	the	the	DET
caryologia-232	85	24	reference	reference	NOUN
caryologia-232	85	25	sequence	sequence	NOUN
caryologia-232	85	26	.	.	PUNCT
caryologia-232	86	1	localization	localization	NOUN
caryologia-232	86	2	of	of	ADP
caryologia-232	86	3	expressed	express	VERB
caryologia-232	86	4	res	re	NOUN
caryologia-232	86	5	along	along	ADP
caryologia-232	86	6	the	the	DET
caryologia-232	86	7	poplar	poplar	ADJ
caryologia-232	86	8	genome	genome	NOUN
caryologia-232	86	9	each	each	PRON
caryologia-232	86	10	of	of	ADP
caryologia-232	86	11	the	the	DET
caryologia-232	86	12	19	19	NUM
caryologia-232	86	13	linkage	linkage	NOUN
caryologia-232	86	14	groups	group	NOUN
caryologia-232	86	15	(	(	PUNCT
caryologia-232	86	16	lgs	lgs	NOUN
caryologia-232	86	17	)	)	PUNCT
caryologia-232	86	18	of	of	ADP
caryologia-232	86	19	the	the	DET
caryologia-232	86	20	currently	currently	ADV
caryologia-232	86	21	available	available	ADJ
caryologia-232	86	22	p.	p.	NOUN
caryologia-232	86	23	trichocarpa	trichocarpa	NOUN
caryologia-232	86	24	genome	genome	NOUN
caryologia-232	86	25	sequence	sequence	NOUN
caryologia-232	86	26	(	(	PUNCT
caryologia-232	86	27	version	version	PROPN
caryologia-232	86	28	gca_000002775.3	gca_000002775.3	PROPN
caryologia-232	86	29	,	,	PUNCT
caryologia-232	86	30	zeng	zeng	PROPN
caryologia-232	86	31	et	et	PROPN
caryologia-232	86	32	al	al	PROPN
caryologia-232	86	33	.	.	PROPN
caryologia-232	86	34	2017	2017	NUM
caryologia-232	86	35	)	)	PUNCT
caryologia-232	86	36	were	be	AUX
caryologia-232	86	37	subdivided	subdivide	VERB
caryologia-232	86	38	into	into	ADP
caryologia-232	86	39	3	3	NUM
caryologia-232	86	40	-	-	PUNCT
caryologia-232	86	41	mbp	mbp	NOUN
caryologia-232	86	42	-	-	PUNCT
caryologia-232	86	43	long	long	ADJ
caryologia-232	86	44	genome	genome	NOUN
caryologia-232	86	45	regions	region	NOUN
caryologia-232	86	46	.	.	PUNCT
caryologia-232	87	1	then	then	ADV
caryologia-232	87	2	,	,	PUNCT
caryologia-232	87	3	in	in	ADP
caryologia-232	87	4	order	order	NOUN
caryologia-232	87	5	to	to	PART
caryologia-232	87	6	localize	localize	VERB
caryologia-232	87	7	ltr	ltr	NOUN
caryologia-232	87	8	-	-	PUNCT
caryologia-232	87	9	re	re	NOUN
caryologia-232	87	10	sequences	sequence	NOUN
caryologia-232	87	11	in	in	ADP
caryologia-232	87	12	the	the	DET
caryologia-232	87	13	genome	genome	NOUN
caryologia-232	87	14	,	,	PUNCT
caryologia-232	87	15	the	the	DET
caryologia-232	87	16	ltr	ltr	NOUN
caryologia-232	87	17	-	-	PUNCT
caryologia-232	87	18	res	re	NOUN
caryologia-232	87	19	were	be	AUX
caryologia-232	87	20	used	use	VERB
caryologia-232	87	21	for	for	ADP
caryologia-232	87	22	masking	mask	VERB
caryologia-232	87	23	the	the	DET
caryologia-232	87	24	3	3	NUM
caryologia-232	87	25	-	-	PUNCT
caryologia-232	87	26	mbp	mbp	NOUN
caryologia-232	87	27	-	-	PUNCT
caryologia-232	87	28	long	long	ADJ
caryologia-232	87	29	fragments	fragment	NOUN
caryologia-232	87	30	of	of	ADP
caryologia-232	87	31	the	the	DET
caryologia-232	87	32	poplar	poplar	ADJ
caryologia-232	87	33	genome	genome	NOUN
caryologia-232	87	34	using	use	VERB
caryologia-232	87	35	repeatmasker	repeatmasker	PROPN
caryologia-232	87	36	(	(	PUNCT
caryologia-232	87	37	http://www.repeatmasker.org	http://www.repeatmasker.org	NUM
caryologia-232	87	38	)	)	PUNCT
caryologia-232	87	39	with	with	ADP
caryologia-232	87	40	the	the	DET
caryologia-232	87	41	following	follow	VERB
caryologia-232	87	42	parameters	parameter	NOUN
caryologia-232	87	43	:	:	PUNCT
caryologia-232	87	44	s	s	X
caryologia-232	87	45	,	,	PUNCT
caryologia-232	87	46	no	no	PRON
caryologia-232	87	47	-	-	PUNCT
caryologia-232	87	48	is	be	AUX
caryologia-232	87	49	,	,	PUNCT
caryologia-232	87	50	no	no	DET
caryologia-232	87	51	-	-	PUNCT
caryologia-232	87	52	low	low	ADJ
caryologia-232	87	53	.	.	PUNCT
caryologia-232	88	1	masking	masking	NOUN
caryologia-232	88	2	was	be	AUX
caryologia-232	88	3	performed	perform	VERB
caryologia-232	88	4	using	use	VERB
caryologia-232	88	5	i	i	PRON
caryologia-232	88	6	)	)	PUNCT
caryologia-232	88	7	all	all	DET
caryologia-232	88	8	isolated	isolated	ADJ
caryologia-232	88	9	full	full	ADJ
caryologia-232	88	10	-	-	PUNCT
caryologia-232	88	11	length	length	NOUN
caryologia-232	88	12	elements	element	NOUN
caryologia-232	88	13	;	;	PUNCT
caryologia-232	88	14	ii	ii	X
caryologia-232	88	15	)	)	PUNCT
caryologia-232	88	16	all	all	DET
caryologia-232	88	17	chromovirus	chromovirus	NOUN
caryologia-232	88	18	ltr	ltr	NOUN
caryologia-232	88	19	-	-	PUNCT
caryologia-232	88	20	res	re	NOUN
caryologia-232	88	21	;	;	PUNCT
caryologia-232	88	22	iii	iii	X
caryologia-232	88	23	)	)	PUNCT
caryologia-232	88	24	a	a	DET
caryologia-232	88	25	putative	putative	ADJ
caryologia-232	88	26	poplar	poplar	ADJ
caryologia-232	88	27	centromeric	centromeric	ADJ
caryologia-232	88	28	sequence	sequence	NOUN
caryologia-232	88	29	(	(	PUNCT
caryologia-232	88	30	islam	islam	PROPN
caryologia-232	88	31	-	-	PUNCT
caryologia-232	88	32	faridi	faridi	PROPN
caryologia-232	88	33	et	et	PROPN
caryologia-232	88	34	al	al	PROPN
caryologia-232	88	35	.	.	PROPN
caryologia-232	88	36	2009	2009	NUM
caryologia-232	88	37	;	;	PUNCT
caryologia-232	88	38	cossu	cossu	PROPN
caryologia-232	88	39	et	et	PROPN
caryologia-232	88	40	al	al	PROPN
caryologia-232	88	41	.	.	PROPN
caryologia-232	88	42	2012	2012	NUM
caryologia-232	88	43	)	)	PUNCT
caryologia-232	88	44	;	;	PUNCT
caryologia-232	89	1	iv	iv	X
caryologia-232	89	2	)	)	PUNCT
caryologia-232	89	3	all	all	DET
caryologia-232	89	4	ltr	ltr	ADJ
caryologia-232	89	5	-	-	PUNCT
caryologia-232	89	6	res	re	NOUN
caryologia-232	89	7	expressed	express	VERB
caryologia-232	89	8	in	in	ADP
caryologia-232	89	9	control	control	NOUN
caryologia-232	89	10	leaves	leave	NOUN
caryologia-232	89	11	(	(	PUNCT
caryologia-232	89	12	mapped	map	VERB
caryologia-232	89	13	by	by	ADP
caryologia-232	89	14	more	more	ADJ
caryologia-232	89	15	than	than	ADP
caryologia-232	89	16	ten	ten	NUM
caryologia-232	89	17	reads	read	NOUN
caryologia-232	89	18	per	per	ADP
caryologia-232	89	19	million	million	NUM
caryologia-232	89	20	)	)	PUNCT
caryologia-232	89	21	.	.	PUNCT
caryologia-232	90	1	the	the	DET
caryologia-232	90	2	number	number	NOUN
caryologia-232	90	3	of	of	ADP
caryologia-232	90	4	masked	mask	VERB
caryologia-232	90	5	bases	basis	NOUN
caryologia-232	90	6	was	be	AUX
caryologia-232	90	7	then	then	ADV
caryologia-232	90	8	counted	count	VERB
caryologia-232	90	9	for	for	ADP
caryologia-232	90	10	each	each	PRON
caryologia-232	90	11	of	of	ADP
caryologia-232	90	12	the	the	DET
caryologia-232	90	13	3	3	NUM
caryologia-232	90	14	mbp	mbp	NOUN
caryologia-232	90	15	fragment	fragment	NOUN
caryologia-232	90	16	using	use	VERB
caryologia-232	90	17	an	an	DET
caryologia-232	90	18	in	in	ADP
caryologia-232	90	19	-	-	PUNCT
caryologia-232	90	20	house	house	NOUN
caryologia-232	90	21	perl	perl	NOUN
caryologia-232	90	22	script	script	NOUN
caryologia-232	90	23	.	.	PUNCT
caryologia-232	91	1	results	result	VERB
caryologia-232	91	2	identification	identification	NOUN
caryologia-232	91	3	of	of	ADP
caryologia-232	91	4	full	full	ADJ
caryologia-232	91	5	-	-	PUNCT
caryologia-232	91	6	length	length	NOUN
caryologia-232	91	7	ltr	ltr	NOUN
caryologia-232	91	8	-	-	PUNCT
caryologia-232	91	9	res	re	NOUN
caryologia-232	91	10	of	of	ADP
caryologia-232	91	11	p.	p.	PROPN
caryologia-232	91	12	trichocarpa	trichocarpa	NOUN
caryologia-232	92	1	the	the	DET
caryologia-232	92	2	full	full	ADJ
caryologia-232	92	3	-	-	PUNCT
caryologia-232	92	4	length	length	NOUN
caryologia-232	92	5	ltr	ltr	NOUN
caryologia-232	92	6	-	-	PUNCT
caryologia-232	92	7	res	re	NOUN
caryologia-232	92	8	used	use	VERB
caryologia-232	92	9	in	in	ADP
caryologia-232	92	10	this	this	DET
caryologia-232	92	11	study	study	NOUN
caryologia-232	92	12	were	be	AUX
caryologia-232	92	13	isolated	isolate	VERB
caryologia-232	92	14	from	from	ADP
caryologia-232	92	15	the	the	DET
caryologia-232	92	16	updated	update	VERB
caryologia-232	92	17	genome	genome	NOUN
caryologia-232	92	18	sequence	sequence	NOUN
caryologia-232	92	19	of	of	ADP
caryologia-232	92	20	p.	p.	PROPN
caryologia-232	92	21	trichocarpa	trichocarpa	PROPN
caryologia-232	92	22	(	(	PUNCT
caryologia-232	92	23	zeng	zeng	PROPN
caryologia-232	92	24	et	et	PROPN
caryologia-232	92	25	al	al	PROPN
caryologia-232	92	26	.	.	PROPN
caryologia-232	92	27	2017	2017	NUM
caryologia-232	92	28	)	)	PUNCT
caryologia-232	92	29	,	,	PUNCT
caryologia-232	92	30	by	by	ADP
caryologia-232	92	31	performing	perform	VERB
caryologia-232	92	32	a	a	DET
caryologia-232	92	33	complete	complete	ADJ
caryologia-232	92	34	genome	genome	NOUN
caryologia-232	92	35	scan	scan	NOUN
caryologia-232	92	36	with	with	ADP
caryologia-232	92	37	ltrharvest	ltrharv	ADJ
caryologia-232	92	38	and	and	CCONJ
caryologia-232	92	39	ltrfinder	ltrfinder	NOUN
caryologia-232	92	40	.	.	PUNCT
caryologia-232	93	1	besides	besides	SCONJ
caryologia-232	93	2	using	use	VERB
caryologia-232	93	3	these	these	DET
caryologia-232	93	4	tools	tool	NOUN
caryologia-232	93	5	with	with	ADP
caryologia-232	93	6	stringent	stringent	ADJ
caryologia-232	93	7	parameters	parameter	NOUN
caryologia-232	93	8	,	,	PUNCT
caryologia-232	93	9	a	a	DET
caryologia-232	93	10	sample	sample	NOUN
caryologia-232	93	11	of	of	ADP
caryologia-232	93	12	isolated	isolated	ADJ
caryologia-232	93	13	elements	element	NOUN
caryologia-232	93	14	were	be	AUX
caryologia-232	93	15	manually	manually	ADV
caryologia-232	93	16	validated	validate	VERB
caryologia-232	93	17	at	at	ADP
caryologia-232	93	18	structural	structural	ADJ
caryologia-232	93	19	level	level	NOUN
caryologia-232	93	20	and	and	CCONJ
caryologia-232	93	21	all	all	PRON
caryologia-232	93	22	were	be	AUX
caryologia-232	93	23	confirmed	confirm	VERB
caryologia-232	93	24	as	as	ADP
caryologia-232	93	25	ltr	ltr	NOUN
caryologia-232	93	26	-	-	PUNCT
caryologia-232	93	27	res	re	NOUN
caryologia-232	93	28	.	.	PUNCT
caryologia-232	94	1	the	the	DET
caryologia-232	94	2	dataset	dataset	NOUN
caryologia-232	94	3	includes	include	VERB
caryologia-232	94	4	828	828	NUM
caryologia-232	94	5	full	full	ADJ
caryologia-232	94	6	-	-	PUNCT
caryologia-232	94	7	length	length	NOUN
caryologia-232	94	8	ltr	ltr	NOUN
caryologia-232	94	9	-	-	PUNCT
caryologia-232	94	10	res	re	NOUN
caryologia-232	94	11	.	.	PUNCT
caryologia-232	94	12	table	table	NOUN
caryologia-232	94	13	1	1	NUM
caryologia-232	94	14	reports	report	VERB
caryologia-232	94	15	the	the	DET
caryologia-232	94	16	number	number	NOUN
caryologia-232	94	17	of	of	ADP
caryologia-232	94	18	ltr	ltr	ADJ
caryologia-232	94	19	-	-	PUNCT
caryologia-232	94	20	res	res	NOUN
caryologia-232	94	21	belonging	belong	VERB
caryologia-232	94	22	to	to	ADP
caryologia-232	94	23	the	the	DET
caryologia-232	94	24	gypsy	gypsy	NOUN
caryologia-232	94	25	and	and	CCONJ
caryologia-232	94	26	copia	copia	NOUN
caryologia-232	94	27	superfamilies	superfamily	NOUN
caryologia-232	94	28	,	,	PUNCT
caryologia-232	94	29	subdivided	subdivide	VERB
caryologia-232	94	30	according	accord	VERB
caryologia-232	94	31	to	to	ADP
caryologia-232	94	32	the	the	DET
caryologia-232	94	33	lineage	lineage	NOUN
caryologia-232	94	34	to	to	PART
caryologia-232	94	35	which	which	PRON
caryologia-232	94	36	they	they	PRON
caryologia-232	94	37	belong	belong	VERB
caryologia-232	94	38	,	,	PUNCT
caryologia-232	94	39	i.e.	i.e.	X
caryologia-232	94	40	athila	athila	ADJ
caryologia-232	94	41	,	,	PUNCT
caryologia-232	94	42	ogre	ogre	NOUN
caryologia-232	94	43	and	and	CCONJ
caryologia-232	94	44	chromovirus	chromovirus	NOUN
caryologia-232	94	45	for	for	ADP
caryologia-232	94	46	gypsy	gypsy	NOUN
caryologia-232	94	47	elements	element	NOUN
caryologia-232	94	48	and	and	CCONJ
caryologia-232	94	49	ale	ale	NOUN
caryologia-232	94	50	(	(	PUNCT
caryologia-232	94	51	distinguished	distinguish	VERB
caryologia-232	94	52	into	into	ADP
caryologia-232	94	53	alei	alei	NOUN
caryologia-232	94	54	and	and	CCONJ
caryologia-232	94	55	aleii	aleii	NOUN
caryologia-232	94	56	)	)	PUNCT
caryologia-232	94	57	,	,	PUNCT
caryologia-232	94	58	angela	angela	PROPN
caryologia-232	94	59	,	,	PUNCT
caryologia-232	94	60	bianca	bianca	PROPN
caryologia-232	94	61	,	,	PUNCT
caryologia-232	94	62	ivana	ivana	PROPN
caryologia-232	94	63	/	/	SYM
caryologia-232	94	64	oryco	oryco	PROPN
caryologia-232	94	65	,	,	PUNCT
caryologia-232	94	66	sire	sire	NOUN
caryologia-232	94	67	and	and	CCONJ
caryologia-232	94	68	tar	tar	NOUN
caryologia-232	94	69	/	/	SYM
caryologia-232	94	70	tork	tork	NOUN
caryologia-232	94	71	for	for	ADP
caryologia-232	94	72	copia	copia	NOUN
caryologia-232	94	73	elements	element	NOUN
caryologia-232	94	74	.	.	PUNCT
caryologia-232	95	1	for	for	ADP
caryologia-232	95	2	each	each	DET
caryologia-232	95	3	lineage	lineage	NOUN
caryologia-232	95	4	the	the	DET
caryologia-232	95	5	mean	mean	ADJ
caryologia-232	95	6	average	average	ADJ
caryologia-232	95	7	coverage	coverage	NOUN
caryologia-232	95	8	is	be	AUX
caryologia-232	95	9	also	also	ADV
caryologia-232	95	10	reported	report	VERB
caryologia-232	95	11	,	,	PUNCT
caryologia-232	95	12	calculated	calculate	VERB
caryologia-232	95	13	after	after	ADP
caryologia-232	95	14	mapping	map	VERB
caryologia-232	95	15	elements	element	NOUN
caryologia-232	95	16	with	with	ADP
caryologia-232	95	17	illumina	illumina	PROPN
caryologia-232	95	18	gdna	gdna	PROPN
caryologia-232	95	19	reads	read	NOUN
caryologia-232	95	20	,	,	PUNCT
caryologia-232	95	21	which	which	PRON
caryologia-232	95	22	represents	represent	VERB
caryologia-232	95	23	the	the	DET
caryologia-232	95	24	mean	mean	ADJ
caryologia-232	95	25	abundance	abundance	NOUN
caryologia-232	95	26	of	of	ADP
caryologia-232	95	27	that	that	DET
caryologia-232	95	28	lineage	lineage	NOUN
caryologia-232	95	29	in	in	ADP
caryologia-232	95	30	the	the	DET
caryologia-232	95	31	p.	p.	NOUN
caryologia-232	95	32	trichocarpa	trichocarpa	NOUN
caryologia-232	95	33	genome	genome	NOUN
caryologia-232	95	34	.	.	PUNCT
caryologia-232	96	1	transcription	transcription	NOUN
caryologia-232	96	2	of	of	ADP
caryologia-232	96	3	ltr	ltr	NOUN
caryologia-232	96	4	-	-	PUNCT
caryologia-232	96	5	res	re	NOUN
caryologia-232	96	6	the	the	DET
caryologia-232	96	7	expression	expression	NOUN
caryologia-232	96	8	of	of	ADP
caryologia-232	96	9	828	828	NUM
caryologia-232	96	10	full	full	ADJ
caryologia-232	96	11	-	-	PUNCT
caryologia-232	96	12	length	length	NOUN
caryologia-232	96	13	ltr	ltr	NOUN
caryologia-232	96	14	-	-	PUNCT
caryologia-232	96	15	res	re	NOUN
caryologia-232	96	16	was	be	AUX
caryologia-232	96	17	measured	measure	VERB
caryologia-232	96	18	by	by	ADP
caryologia-232	96	19	mapping	map	VERB
caryologia-232	96	20	the	the	DET
caryologia-232	96	21	elements	element	NOUN
caryologia-232	96	22	with	with	ADP
caryologia-232	96	23	illumina	illumina	PROPN
caryologia-232	96	24	cdna	cdna	PROPN
caryologia-232	96	25	reads	read	NOUN
caryologia-232	96	26	obtained	obtain	VERB
caryologia-232	96	27	from	from	ADP
caryologia-232	96	28	leaves	leave	NOUN
caryologia-232	96	29	of	of	ADP
caryologia-232	96	30	plants	plant	NOUN
caryologia-232	96	31	of	of	ADP
caryologia-232	96	32	p.	p.	NOUN
caryologia-232	96	33	trichocarpa	trichocarpa	NOUN
caryologia-232	96	34	cultivated	cultivate	VERB
caryologia-232	96	35	in	in	ADP
caryologia-232	96	36	standard	standard	ADJ
caryologia-232	96	37	conditions	condition	NOUN
caryologia-232	96	38	(	(	PUNCT
caryologia-232	96	39	controls	control	NOUN
caryologia-232	96	40	)	)	PUNCT
caryologia-232	96	41	and	and	CCONJ
caryologia-232	96	42	under	under	ADP
caryologia-232	96	43	different	different	ADJ
caryologia-232	96	44	stress	stress	NOUN
caryologia-232	96	45	(	(	PUNCT
caryologia-232	96	46	drought	drought	NOUN
caryologia-232	96	47	,	,	PUNCT
caryologia-232	96	48	heat	heat	NOUN
caryologia-232	96	49	,	,	PUNCT
caryologia-232	96	50	cold	cold	ADJ
caryologia-232	96	51	,	,	PUNCT
caryologia-232	96	52	or	or	CCONJ
caryologia-232	96	53	salt	salt	NOUN
caryologia-232	96	54	)	)	PUNCT
caryologia-232	96	55	.	.	PUNCT
caryologia-232	97	1	in	in	ADP
caryologia-232	97	2	the	the	DET
caryologia-232	97	3	control	control	NOUN
caryologia-232	97	4	leaves	leave	NOUN
caryologia-232	97	5	,	,	PUNCT
caryologia-232	97	6	only	only	ADV
caryologia-232	97	7	0.47	0.47	NUM
caryologia-232	97	8	%	%	NOUN
caryologia-232	97	9	of	of	ADP
caryologia-232	97	10	the	the	DET
caryologia-232	97	11	cdna	cdna	PROPN
caryologia-232	97	12	reads	read	NOUN
caryologia-232	97	13	mapped	map	VERB
caryologia-232	97	14	the	the	DET
caryologia-232	97	15	library	library	NOUN
caryologia-232	97	16	,	,	PUNCT
caryologia-232	97	17	hence	hence	ADV
caryologia-232	97	18	,	,	PUNCT
caryologia-232	97	19	in	in	ADP
caryologia-232	97	20	general	general	ADJ
caryologia-232	97	21	,	,	PUNCT
caryologia-232	97	22	ltr	ltr	ADJ
caryologia-232	97	23	-	-	PUNCT
caryologia-232	97	24	res	re	NOUN
caryologia-232	97	25	are	be	AUX
caryologia-232	97	26	barely	barely	ADV
caryologia-232	97	27	expressed	express	VERB
caryologia-232	97	28	(	(	PUNCT
caryologia-232	97	29	fig	fig	NOUN
caryologia-232	97	30	.	.	NOUN
caryologia-232	98	1	1	1	NUM
caryologia-232	98	2	)	)	PUNCT
caryologia-232	98	3	.	.	PUNCT
caryologia-232	99	1	the	the	DET
caryologia-232	99	2	expression	expression	NOUN
caryologia-232	99	3	level	level	NOUN
caryologia-232	99	4	of	of	ADP
caryologia-232	99	5	ltr	ltr	NOUN
caryologia-232	99	6	-	-	PUNCT
caryologia-232	99	7	res	re	NOUN
caryologia-232	99	8	decreased	decrease	VERB
caryologia-232	99	9	with	with	ADP
caryologia-232	99	10	stress	stress	NOUN
caryologia-232	99	11	,	,	PUNCT
caryologia-232	99	12	in	in	ADP
caryologia-232	99	13	the	the	DET
caryologia-232	99	14	decreasing	decrease	VERB
caryologia-232	99	15	order	order	NOUN
caryologia-232	99	16	drought	drought	NOUN
caryologia-232	99	17	-	-	PUNCT
caryologia-232	99	18	cold	cold	ADJ
caryologia-232	99	19	-	-	PUNCT
caryologia-232	99	20	heat	heat	NOUN
caryologia-232	99	21	-	-	PUNCT
caryologia-232	99	22	salt	salt	NOUN
caryologia-232	99	23	(	(	PUNCT
caryologia-232	99	24	fig	fig	NOUN
caryologia-232	99	25	.	.	PUNCT
caryologia-232	100	1	1	1	NUM
caryologia-232	100	2	)	)	PUNCT
caryologia-232	100	3	.	.	PUNCT
caryologia-232	101	1	no	no	DET
caryologia-232	101	2	significant	significant	ADJ
caryologia-232	101	3	difference	difference	NOUN
caryologia-232	101	4	was	be	AUX
caryologia-232	101	5	observed	observe	VERB
caryologia-232	101	6	between	between	ADP
caryologia-232	101	7	short	short	ADJ
caryologia-232	101	8	and	and	CCONJ
caryologia-232	101	9	prolonged	prolonged	ADJ
caryologia-232	101	10	treatments	treatment	NOUN
caryologia-232	101	11	,	,	PUNCT
caryologia-232	101	12	with	with	ADP
caryologia-232	101	13	the	the	DET
caryologia-232	101	14	exception	exception	NOUN
caryologia-232	101	15	of	of	ADP
caryologia-232	101	16	cold	cold	ADJ
caryologia-232	101	17	treatment	treatment	NOUN
caryologia-232	101	18	,	,	PUNCT
caryologia-232	101	19	where	where	SCONJ
caryologia-232	101	20	expression	expression	NOUN
caryologia-232	101	21	decreased	decreased	AUX
caryologia-232	101	22	reduced	reduce	VERB
caryologia-232	101	23	in	in	ADP
caryologia-232	101	24	prolonged	prolonged	ADJ
caryologia-232	101	25	exposition	exposition	NOUN
caryologia-232	101	26	.	.	PUNCT
caryologia-232	102	1	according	accord	VERB
caryologia-232	102	2	to	to	ADP
caryologia-232	102	3	lu	lu	PROPN
caryologia-232	102	4	et	et	PROPN
caryologia-232	102	5	al	al	PROPN
caryologia-232	102	6	.	.	PROPN
caryologia-232	103	1	(	(	PUNCT
caryologia-232	103	2	2013	2013	NUM
caryologia-232	103	3	)	)	PUNCT
caryologia-232	103	4	,	,	PUNCT
caryologia-232	103	5	we	we	PRON
caryologia-232	103	6	considered	consider	VERB
caryologia-232	103	7	as	as	SCONJ
caryologia-232	103	8	expressed	express	VERB
caryologia-232	103	9	those	those	DET
caryologia-232	103	10	ltr	ltr	ADJ
caryologia-232	103	11	-	-	PUNCT
caryologia-232	103	12	res	re	NOUN
caryologia-232	103	13	mapped	map	VERB
caryologia-232	103	14	by	by	ADP
caryologia-232	103	15	more	more	ADJ
caryologia-232	103	16	than	than	ADP
caryologia-232	103	17	one	one	NUM
caryologia-232	103	18	read	read	NOUN
caryologia-232	103	19	per	per	ADP
caryologia-232	103	20	million	million	NUM
caryologia-232	103	21	.	.	PUNCT
caryologia-232	104	1	the	the	DET
caryologia-232	104	2	number	number	NOUN
caryologia-232	104	3	of	of	ADP
caryologia-232	104	4	expressed	express	VERB
caryologia-232	104	5	ltr	ltr	ADJ
caryologia-232	104	6	-	-	PUNCT
caryologia-232	104	7	res	re	NOUN
caryologia-232	104	8	in	in	ADP
caryologia-232	104	9	controls	control	NOUN
caryologia-232	104	10	and	and	CCONJ
caryologia-232	104	11	in	in	ADP
caryologia-232	104	12	drought-	drought-	PROPN
caryologia-232	104	13	,	,	PUNCT
caryologia-232	104	14	cold-	cold-	X
caryologia-232	104	15	,	,	PUNCT
caryologia-232	104	16	heatand	heatand	ADJ
caryologia-232	104	17	salt	salt	NOUN
caryologia-232	104	18	-	-	PUNCT
caryologia-232	104	19	exposed	expose	VERB
caryologia-232	104	20	leaves	leave	NOUN
caryologia-232	104	21	is	be	AUX
caryologia-232	104	22	reported	report	VERB
caryologia-232	104	23	in	in	ADP
caryologia-232	104	24	fig	fig	NOUN
caryologia-232	104	25	.	.	PUNCT
caryologia-232	105	1	2	2	X
caryologia-232	105	2	.	.	X
caryologia-232	105	3	the	the	DET
caryologia-232	105	4	number	number	NOUN
caryologia-232	105	5	of	of	ADP
caryologia-232	105	6	ltr	ltr	NOUN
caryologia-232	105	7	-	-	PUNCT
caryologia-232	105	8	res	re	NOUN
caryologia-232	105	9	expressed	express	VERB
caryologia-232	105	10	in	in	ADP
caryologia-232	105	11	drought	drought	NOUN
caryologia-232	105	12	-	-	PUNCT
caryologia-232	105	13	treated	treat	VERB
caryologia-232	105	14	leaves	leave	NOUN
caryologia-232	105	15	is	be	AUX
caryologia-232	105	16	similar	similar	ADJ
caryologia-232	105	17	to	to	ADP
caryologia-232	105	18	that	that	PRON
caryologia-232	105	19	of	of	ADP
caryologia-232	105	20	control	control	NOUN
caryologia-232	105	21	leaves	leave	NOUN
caryologia-232	105	22	.	.	PUNCT
caryologia-232	106	1	on	on	ADP
caryologia-232	106	2	the	the	DET
caryologia-232	106	3	contrary	contrary	NOUN
caryologia-232	106	4	,	,	PUNCT
caryologia-232	106	5	this	this	DET
caryologia-232	106	6	number	number	NOUN
caryologia-232	106	7	is	be	AUX
caryologia-232	106	8	strongly	strongly	ADV
caryologia-232	106	9	reduced	reduce	VERB
caryologia-232	106	10	after	after	ADP
caryologia-232	106	11	the	the	DET
caryologia-232	106	12	other	other	ADJ
caryologia-232	106	13	treatments	treatment	NOUN
caryologia-232	106	14	(	(	PUNCT
caryologia-232	106	15	fig	fig	NOUN
caryologia-232	106	16	.	.	PUNCT
caryologia-232	107	1	2	2	NUM
caryologia-232	107	2	)	)	PUNCT
caryologia-232	107	3	.	.	PUNCT
caryologia-232	108	1	however	however	ADV
caryologia-232	108	2	,	,	PUNCT
caryologia-232	108	3	the	the	DET
caryologia-232	108	4	table	table	NOUN
caryologia-232	108	5	1	1	NUM
caryologia-232	108	6	.	.	X
caryologia-232	108	7	number	number	NOUN
caryologia-232	108	8	and	and	CCONJ
caryologia-232	108	9	mean	mean	ADJ
caryologia-232	108	10	average	average	ADJ
caryologia-232	108	11	coverage	coverage	NOUN
caryologia-232	108	12	of	of	ADP
caryologia-232	108	13	full	full	ADJ
caryologia-232	108	14	-	-	PUNCT
caryologia-232	108	15	length	length	NOUN
caryologia-232	108	16	ltr	ltr	NOUN
caryologia-232	108	17	-	-	PUNCT
caryologia-232	108	18	res	re	NOUN
caryologia-232	108	19	collected	collect	VERB
caryologia-232	108	20	in	in	ADP
caryologia-232	108	21	the	the	DET
caryologia-232	108	22	p.	p.	NOUN
caryologia-232	108	23	trichocarpa	trichocarpa	NOUN
caryologia-232	108	24	genome	genome	NOUN
caryologia-232	108	25	(	(	PUNCT
caryologia-232	108	26	version	version	NOUN
caryologia-232	108	27	gca_000002775.3	gca_000002775.3	PROPN
caryologia-232	108	28	)	)	PUNCT
caryologia-232	108	29	and	and	CCONJ
caryologia-232	108	30	separated	separate	VERB
caryologia-232	108	31	according	accord	VERB
caryologia-232	108	32	to	to	ADP
caryologia-232	108	33	their	their	PRON
caryologia-232	108	34	superfamily	superfamily	ADJ
caryologia-232	108	35	and	and	CCONJ
caryologia-232	108	36	lineage	lineage	NOUN
caryologia-232	108	37	.	.	PUNCT
caryologia-232	109	1	super	super	ADJ
caryologia-232	109	2	-	-	ADJ
caryologia-232	109	3	family	family	ADJ
caryologia-232	109	4	lineage	lineage	NOUN
caryologia-232	109	5	nr	nr	PROPN
caryologia-232	109	6	.	.	PROPN
caryologia-232	109	7	of	of	ADP
caryologia-232	109	8	elements	element	NOUN
caryologia-232	109	9	mean	mean	VERB
caryologia-232	109	10	average	average	ADJ
caryologia-232	109	11	coverage	coverage	NOUN
caryologia-232	109	12	copia	copia	PROPN
caryologia-232	109	13	alei	alei	PROPN
caryologia-232	109	14	42	42	NUM
caryologia-232	109	15	14.04	14.04	NUM
caryologia-232	109	16	aleii	aleii	NOUN
caryologia-232	109	17	122	122	NUM
caryologia-232	109	18	22.33	22.33	NUM
caryologia-232	109	19	angela	angela	PROPN
caryologia-232	109	20	2	2	NUM
caryologia-232	109	21	64.13	64.13	NUM
caryologia-232	109	22	bianca	bianca	NOUN
caryologia-232	109	23	1	1	NUM
caryologia-232	109	24	28.24	28.24	NUM
caryologia-232	109	25	ivana	ivana	PROPN
caryologia-232	109	26	/	/	SYM
caryologia-232	109	27	oryco	oryco	PROPN
caryologia-232	109	28	104	104	NUM
caryologia-232	109	29	19.06	19.06	NUM
caryologia-232	109	30	sire	sire	NOUN
caryologia-232	109	31	7	7	NUM
caryologia-232	109	32	42.11	42.11	NUM
caryologia-232	109	33	tar	tar	NOUN
caryologia-232	109	34	/	/	SYM
caryologia-232	109	35	tork	tork	NOUN
caryologia-232	109	36	90	90	NUM
caryologia-232	109	37	17.45	17.45	NUM
caryologia-232	109	38	total	total	NOUN
caryologia-232	109	39	368	368	NUM
caryologia-232	109	40	19.89	19.89	NUM
caryologia-232	109	41	gypsy	gypsy	NOUN
caryologia-232	109	42	athila	athila	VERB
caryologia-232	109	43	126	126	NUM
caryologia-232	109	44	57.37	57.37	NUM
caryologia-232	109	45	chromovirus	chromovirus	NOUN
caryologia-232	109	46	174	174	NUM
caryologia-232	109	47	40.20	40.20	NUM
caryologia-232	109	48	ogre	ogre	NOUN
caryologia-232	109	49	67	67	NUM
caryologia-232	109	50	41.16	41.16	NUM
caryologia-232	109	51	unknown	unknown	ADJ
caryologia-232	109	52	50	50	NUM
caryologia-232	109	53	13.46	13.46	NUM
caryologia-232	109	54	total	total	NOUN
caryologia-232	109	55	417	417	NUM
caryologia-232	109	56	42.34	42.34	NUM
caryologia-232	109	57	unknown	unknown	ADJ
caryologia-232	109	58	43	43	NUM
caryologia-232	109	59	22.65	22.65	NUM
caryologia-232	109	60	total	total	NOUN
caryologia-232	109	61	828	828	NUM
caryologia-232	109	62	31.34	31.34	NUM
caryologia-232	109	63	73genome	73genome	NUM
caryologia-232	109	64	analysis	analysis	NOUN
caryologia-232	109	65	of	of	ADP
caryologia-232	109	66	long	long	ADJ
caryologia-232	109	67	-	-	PUNCT
caryologia-232	109	68	terminal	terminal	ADJ
caryologia-232	109	69	-	-	PUNCT
caryologia-232	109	70	repeat	repeat	NOUN
caryologia-232	109	71	retrotransposon	retrotransposon	NOUN
caryologia-232	109	72	transcription	transcription	NOUN
caryologia-232	109	73	in	in	ADP
caryologia-232	109	74	leaves	leave	NOUN
caryologia-232	109	75	of	of	ADP
caryologia-232	109	76	populus	populus	ADJ
caryologia-232	109	77	trichocarpa	trichocarpa	NOUN
caryologia-232	109	78	number	number	NOUN
caryologia-232	109	79	of	of	ADP
caryologia-232	109	80	expressed	express	VERB
caryologia-232	109	81	ltr	ltr	ADJ
caryologia-232	109	82	-	-	PUNCT
caryologia-232	109	83	res	re	NOUN
caryologia-232	109	84	increased	increase	VERB
caryologia-232	109	85	after	after	ADP
caryologia-232	109	86	prolonged	prolonged	ADJ
caryologia-232	109	87	salt	salt	NOUN
caryologia-232	109	88	treatment	treatment	NOUN
caryologia-232	109	89	.	.	PUNCT
caryologia-232	110	1	the	the	DET
caryologia-232	110	2	relationship	relationship	NOUN
caryologia-232	110	3	between	between	ADP
caryologia-232	110	4	the	the	DET
caryologia-232	110	5	abundance	abundance	NOUN
caryologia-232	110	6	of	of	ADP
caryologia-232	110	7	a	a	DET
caryologia-232	110	8	retrotransposon	retrotransposon	NOUN
caryologia-232	110	9	in	in	ADP
caryologia-232	110	10	the	the	DET
caryologia-232	110	11	genome	genome	NOUN
caryologia-232	110	12	and	and	CCONJ
caryologia-232	110	13	its	its	PRON
caryologia-232	110	14	expression	expression	NOUN
caryologia-232	110	15	in	in	ADP
caryologia-232	110	16	another	another	DET
caryologia-232	110	17	analysis	analysis	NOUN
caryologia-232	110	18	we	we	PRON
caryologia-232	110	19	measured	measure	VERB
caryologia-232	110	20	the	the	DET
caryologia-232	110	21	relationship	relationship	NOUN
caryologia-232	110	22	between	between	ADP
caryologia-232	110	23	the	the	DET
caryologia-232	110	24	abundance	abundance	NOUN
caryologia-232	110	25	of	of	ADP
caryologia-232	110	26	a	a	DET
caryologia-232	110	27	ltr	ltr	NOUN
caryologia-232	110	28	-	-	PUNCT
caryologia-232	110	29	re	re	NOUN
caryologia-232	110	30	in	in	ADP
caryologia-232	110	31	the	the	DET
caryologia-232	110	32	genome	genome	NOUN
caryologia-232	110	33	and	and	CCONJ
caryologia-232	110	34	the	the	DET
caryologia-232	110	35	corresponding	corresponding	ADJ
caryologia-232	110	36	expression	expression	NOUN
caryologia-232	110	37	level	level	NOUN
caryologia-232	110	38	.	.	PUNCT
caryologia-232	111	1	such	such	ADJ
caryologia-232	111	2	data	datum	NOUN
caryologia-232	111	3	are	be	AUX
caryologia-232	111	4	reported	report	VERB
caryologia-232	111	5	for	for	ADP
caryologia-232	111	6	control	control	NOUN
caryologia-232	111	7	leaves	leave	NOUN
caryologia-232	111	8	in	in	ADP
caryologia-232	111	9	fig	fig	NOUN
caryologia-232	111	10	.	.	PUNCT
caryologia-232	112	1	3	3	X
caryologia-232	112	2	.	.	X
caryologia-232	112	3	it	it	PRON
caryologia-232	112	4	can	can	AUX
caryologia-232	112	5	be	be	AUX
caryologia-232	112	6	observed	observe	VERB
caryologia-232	112	7	that	that	SCONJ
caryologia-232	112	8	abundant	abundant	ADJ
caryologia-232	112	9	ltr	ltr	ADJ
caryologia-232	112	10	-	-	PUNCT
caryologia-232	112	11	res	re	NOUN
caryologia-232	112	12	(	(	PUNCT
caryologia-232	112	13	average	average	ADJ
caryologia-232	112	14	coverage	coverage	NOUN
caryologia-232	112	15	>	>	X
caryologia-232	112	16	100	100	NUM
caryologia-232	112	17	)	)	PUNCT
caryologia-232	112	18	are	be	AUX
caryologia-232	112	19	lowly	lowly	ADV
caryologia-232	112	20	expressed	express	VERB
caryologia-232	112	21	.	.	PUNCT
caryologia-232	113	1	similar	similar	ADJ
caryologia-232	113	2	results	result	NOUN
caryologia-232	113	3	were	be	AUX
caryologia-232	113	4	also	also	ADV
caryologia-232	113	5	found	find	VERB
caryologia-232	113	6	in	in	ADP
caryologia-232	113	7	leaves	leave	NOUN
caryologia-232	113	8	of	of	ADP
caryologia-232	113	9	plants	plant	NOUN
caryologia-232	113	10	exposed	expose	VERB
caryologia-232	113	11	to	to	ADP
caryologia-232	113	12	different	different	ADJ
caryologia-232	113	13	stresses	stress	NOUN
caryologia-232	113	14	(	(	PUNCT
caryologia-232	113	15	not	not	PART
caryologia-232	113	16	reported	report	VERB
caryologia-232	113	17	)	)	PUNCT
caryologia-232	113	18	.	.	PUNCT
caryologia-232	114	1	since	since	SCONJ
caryologia-232	114	2	assessing	assess	VERB
caryologia-232	114	3	the	the	DET
caryologia-232	114	4	expression	expression	NOUN
caryologia-232	114	5	of	of	ADP
caryologia-232	114	6	a	a	DET
caryologia-232	114	7	ltr	ltr	NOUN
caryologia-232	114	8	-	-	PUNCT
caryologia-232	114	9	re	re	NOUN
caryologia-232	114	10	is	be	AUX
caryologia-232	114	11	based	base	VERB
caryologia-232	114	12	on	on	ADP
caryologia-232	114	13	the	the	DET
caryologia-232	114	14	occurrence	occurrence	NOUN
caryologia-232	114	15	of	of	ADP
caryologia-232	114	16	ltr	ltr	NOUN
caryologia-232	114	17	-	-	PUNCT
caryologia-232	114	18	re	re	NOUN
caryologia-232	114	19	sequences	sequence	NOUN
caryologia-232	114	20	in	in	ADP
caryologia-232	114	21	cdna	cdna	PROPN
caryologia-232	114	22	libraries	library	NOUN
caryologia-232	114	23	,	,	PUNCT
caryologia-232	114	24	one	one	PRON
caryologia-232	114	25	might	might	AUX
caryologia-232	114	26	ascribe	ascribe	VERB
caryologia-232	114	27	such	such	ADJ
caryologia-232	114	28	occurrence	occurrence	NOUN
caryologia-232	114	29	to	to	ADP
caryologia-232	114	30	genomic	genomic	VERB
caryologia-232	114	31	dna	dna	PROPN
caryologia-232	114	32	contamination	contamination	NOUN
caryologia-232	114	33	.	.	PUNCT
caryologia-232	115	1	actually	actually	ADV
caryologia-232	115	2	,	,	PUNCT
caryologia-232	115	3	since	since	SCONJ
caryologia-232	115	4	the	the	DET
caryologia-232	115	5	most	most	ADV
caryologia-232	115	6	abundant	abundant	ADJ
caryologia-232	115	7	ltrres	ltrre	NOUN
caryologia-232	115	8	resulted	result	VERB
caryologia-232	115	9	slightly	slightly	ADV
caryologia-232	115	10	or	or	CCONJ
caryologia-232	115	11	even	even	ADV
caryologia-232	115	12	not	not	PART
caryologia-232	115	13	expressed	express	VERB
caryologia-232	115	14	,	,	PUNCT
caryologia-232	115	15	contamination	contamination	NOUN
caryologia-232	115	16	by	by	ADP
caryologia-232	115	17	genomic	genomic	ADJ
caryologia-232	115	18	dna	dna	PROPN
caryologia-232	115	19	in	in	ADP
caryologia-232	115	20	the	the	DET
caryologia-232	115	21	cdna	cdna	PROPN
caryologia-232	115	22	libraries	library	NOUN
caryologia-232	115	23	can	can	AUX
caryologia-232	115	24	be	be	AUX
caryologia-232	115	25	largely	largely	ADV
caryologia-232	115	26	ruled	rule	VERB
caryologia-232	115	27	out	out	ADP
caryologia-232	115	28	.	.	PUNCT
caryologia-232	116	1	influence	influence	NOUN
caryologia-232	116	2	of	of	ADP
caryologia-232	116	3	chromosomal	chromosomal	ADJ
caryologia-232	116	4	localization	localization	NOUN
caryologia-232	116	5	on	on	ADP
caryologia-232	116	6	retrotransposons	retrotransposon	NOUN
caryologia-232	116	7	expression	expression	NOUN
caryologia-232	116	8	in	in	ADP
caryologia-232	116	9	order	order	NOUN
caryologia-232	116	10	to	to	PART
caryologia-232	116	11	verify	verify	VERB
caryologia-232	116	12	whether	whether	SCONJ
caryologia-232	116	13	active	active	ADJ
caryologia-232	116	14	ltr	ltr	NOUN
caryologia-232	116	15	-	-	PUNCT
caryologia-232	116	16	res	re	NOUN
caryologia-232	116	17	were	be	AUX
caryologia-232	116	18	localized	localize	VERB
caryologia-232	116	19	at	at	ADP
caryologia-232	116	20	specific	specific	ADJ
caryologia-232	116	21	chromosomal	chromosomal	ADJ
caryologia-232	116	22	sites	site	NOUN
caryologia-232	116	23	,	,	PUNCT
caryologia-232	116	24	we	we	PRON
caryologia-232	116	25	aligned	align	VERB
caryologia-232	116	26	ltr	ltr	NOUN
caryologia-232	116	27	-	-	PUNCT
caryologia-232	116	28	re	re	NOUN
caryologia-232	116	29	sequences	sequence	NOUN
caryologia-232	116	30	,	,	PUNCT
caryologia-232	116	31	highly	highly	ADV
caryologia-232	116	32	expressed	express	VERB
caryologia-232	116	33	(	(	PUNCT
caryologia-232	116	34	mrpm	mrpm	ADJ
caryologia-232	116	35	>	>	X
caryologia-232	116	36	10	10	NUM
caryologia-232	116	37	)	)	PUNCT
caryologia-232	116	38	in	in	ADP
caryologia-232	116	39	the	the	DET
caryologia-232	116	40	control	control	NOUN
caryologia-232	116	41	leaves	leave	VERB
caryologia-232	116	42	,	,	PUNCT
caryologia-232	116	43	to	to	ADP
caryologia-232	116	44	the	the	DET
caryologia-232	116	45	genome	genome	NOUN
caryologia-232	116	46	of	of	ADP
caryologia-232	116	47	p.	p.	PROPN
caryologia-232	116	48	trichocarpa	trichocarpa	PROPN
caryologia-232	116	49	(	(	PUNCT
caryologia-232	116	50	fig	fig	NOUN
caryologia-232	116	51	.	.	PUNCT
caryologia-232	116	52	4	4	NUM
caryologia-232	116	53	)	)	PUNCT
caryologia-232	116	54	.	.	PUNCT
caryologia-232	117	1	for	for	ADP
caryologia-232	117	2	comparison	comparison	NOUN
caryologia-232	117	3	,	,	PUNCT
caryologia-232	117	4	we	we	PRON
caryologia-232	117	5	separately	separately	ADV
caryologia-232	117	6	aligned	align	VERB
caryologia-232	117	7	the	the	DET
caryologia-232	117	8	genome	genome	NOUN
caryologia-232	117	9	with	with	ADP
caryologia-232	117	10	all	all	DET
caryologia-232	117	11	the	the	DET
caryologia-232	117	12	828	828	NUM
caryologia-232	117	13	ltr	ltr	ADJ
caryologia-232	117	14	-	-	PUNCT
caryologia-232	117	15	res	re	NOUN
caryologia-232	117	16	;	;	PUNCT
caryologia-232	117	17	furthermore	furthermore	ADV
caryologia-232	117	18	we	we	PRON
caryologia-232	117	19	determined	determine	VERB
caryologia-232	117	20	the	the	DET
caryologia-232	117	21	putative	putative	ADJ
caryologia-232	117	22	position	position	NOUN
caryologia-232	117	23	of	of	ADP
caryologia-232	117	24	the	the	DET
caryologia-232	117	25	centromere	centromere	NOUN
caryologia-232	117	26	on	on	ADP
caryologia-232	117	27	each	each	DET
caryologia-232	117	28	linkage	linkage	NOUN
caryologia-232	117	29	group	group	NOUN
caryologia-232	117	30	(	(	PUNCT
caryologia-232	117	31	lg	lg	NOUN
caryologia-232	117	32	)	)	PUNCT
caryologia-232	117	33	by	by	ADP
caryologia-232	117	34	aligning	align	VERB
caryologia-232	117	35	a	a	DET
caryologia-232	117	36	tandemly	tandemly	ADV
caryologia-232	117	37	repeated	repeat	VERB
caryologia-232	117	38	centromeric	centromeric	ADJ
caryologia-232	117	39	sequence	sequence	NOUN
caryologia-232	117	40	of	of	ADP
caryologia-232	117	41	p.	p.	PROPN
caryologia-232	117	42	trichocarpa	trichocarpa	PROPN
caryologia-232	117	43	(	(	PUNCT
caryologia-232	117	44	islam	islam	PROPN
caryologia-232	117	45	-	-	PUNCT
caryologia-232	117	46	faridi	faridi	PROPN
caryologia-232	117	47	et	et	PROPN
caryologia-232	117	48	al	al	PROPN
caryologia-232	117	49	.	.	PROPN
caryologia-232	117	50	2009	2009	NUM
caryologia-232	117	51	)	)	PUNCT
caryologia-232	117	52	and	and	CCONJ
caryologia-232	117	53	chromovirus	chromovirus	NOUN
caryologia-232	117	54	elements	element	NOUN
caryologia-232	117	55	(	(	PUNCT
caryologia-232	117	56	which	which	PRON
caryologia-232	117	57	preferentially	preferentially	ADV
caryologia-232	117	58	localize	localize	VERB
caryologia-232	117	59	at	at	ADP
caryologia-232	117	60	centromeres	centromere	NOUN
caryologia-232	117	61	,	,	PUNCT
caryologia-232	117	62	neumann	neumann	PROPN
caryologia-232	117	63	et	et	PROPN
caryologia-232	117	64	al	al	PROPN
caryologia-232	117	65	.	.	PROPN
caryologia-232	117	66	2011	2011	NUM
caryologia-232	117	67	)	)	PUNCT
caryologia-232	117	68	.	.	PUNCT
caryologia-232	118	1	the	the	DET
caryologia-232	118	2	chromosomal	chromosomal	ADJ
caryologia-232	118	3	profiles	profile	NOUN
caryologia-232	118	4	of	of	ADP
caryologia-232	118	5	all	all	DET
caryologia-232	118	6	the	the	DET
caryologia-232	118	7	ltr	ltr	ADJ
caryologia-232	118	8	-	-	PUNCT
caryologia-232	118	9	res	re	NOUN
caryologia-232	118	10	and	and	CCONJ
caryologia-232	118	11	highly	highly	ADV
caryologia-232	118	12	expressed	express	VERB
caryologia-232	118	13	ltrres	ltrre	NOUN
caryologia-232	118	14	were	be	AUX
caryologia-232	118	15	substantially	substantially	ADV
caryologia-232	118	16	similar	similar	ADJ
caryologia-232	118	17	(	(	PUNCT
caryologia-232	118	18	fig	fig	NOUN
caryologia-232	118	19	.	.	PUNCT
caryologia-232	118	20	4	4	NUM
caryologia-232	118	21	)	)	PUNCT
caryologia-232	118	22	.	.	PUNCT
caryologia-232	119	1	in	in	ADP
caryologia-232	119	2	some	some	DET
caryologia-232	119	3	cases	case	NOUN
caryologia-232	119	4	,	,	PUNCT
caryologia-232	119	5	minor	minor	ADJ
caryologia-232	119	6	peaks	peak	NOUN
caryologia-232	119	7	in	in	ADP
caryologia-232	119	8	the	the	DET
caryologia-232	119	9	general	general	ADJ
caryologia-232	119	10	ltr	ltr	ADJ
caryologia-232	119	11	-	-	PUNCT
caryologia-232	119	12	res	re	NOUN
caryologia-232	119	13	profiles	profile	NOUN
caryologia-232	119	14	were	be	AUX
caryologia-232	119	15	apparently	apparently	ADV
caryologia-232	119	16	absent	absent	ADJ
caryologia-232	119	17	in	in	ADP
caryologia-232	119	18	the	the	DET
caryologia-232	119	19	expressed	express	VERB
caryologia-232	119	20	ltr	ltr	ADJ
caryologia-232	119	21	-	-	PUNCT
caryologia-232	119	22	res	re	NOUN
caryologia-232	119	23	profiles	profile	NOUN
caryologia-232	119	24	,	,	PUNCT
caryologia-232	119	25	suggesting	suggest	VERB
caryologia-232	119	26	that	that	SCONJ
caryologia-232	119	27	elements	element	NOUN
caryologia-232	119	28	at	at	ADP
caryologia-232	119	29	those	those	DET
caryologia-232	119	30	loci	locus	NOUN
caryologia-232	119	31	were	be	AUX
caryologia-232	119	32	generally	generally	ADV
caryologia-232	119	33	inactive	inactive	ADJ
caryologia-232	119	34	.	.	PUNCT
caryologia-232	120	1	fig	fig	NOUN
caryologia-232	120	2	.	.	PUNCT
caryologia-232	121	1	1	1	X
caryologia-232	121	2	.	.	X
caryologia-232	121	3	total	total	ADJ
caryologia-232	121	4	number	number	NOUN
caryologia-232	121	5	of	of	ADP
caryologia-232	121	6	mapped	map	VERB
caryologia-232	121	7	reads	read	NOUN
caryologia-232	121	8	(	(	PUNCT
caryologia-232	121	9	per	per	ADP
caryologia-232	121	10	million	million	NUM
caryologia-232	121	11	of	of	ADP
caryologia-232	121	12	reads	read	NOUN
caryologia-232	121	13	)	)	PUNCT
caryologia-232	121	14	on	on	ADP
caryologia-232	121	15	the	the	DET
caryologia-232	121	16	828	828	NUM
caryologia-232	121	17	full	full	ADJ
caryologia-232	121	18	-	-	PUNCT
caryologia-232	121	19	length	length	NOUN
caryologia-232	121	20	ltr	ltr	NOUN
caryologia-232	121	21	-	-	PUNCT
caryologia-232	121	22	res	re	NOUN
caryologia-232	121	23	of	of	ADP
caryologia-232	121	24	p.	p.	PROPN
caryologia-232	121	25	trichocarpa	trichocarpa	NOUN
caryologia-232	121	26	,	,	PUNCT
caryologia-232	121	27	in	in	ADP
caryologia-232	121	28	leaves	leave	NOUN
caryologia-232	121	29	of	of	ADP
caryologia-232	121	30	control	control	NOUN
caryologia-232	121	31	and	and	CCONJ
caryologia-232	121	32	stress	stress	NOUN
caryologia-232	121	33	-	-	PUNCT
caryologia-232	121	34	exposed	expose	VERB
caryologia-232	121	35	plants	plant	NOUN
caryologia-232	121	36	.	.	PUNCT
caryologia-232	122	1	stresses	stress	NOUN
caryologia-232	122	2	included	include	VERB
caryologia-232	122	3	cold	cold	ADJ
caryologia-232	122	4	,	,	PUNCT
caryologia-232	122	5	drought	drought	NOUN
caryologia-232	122	6	,	,	PUNCT
caryologia-232	122	7	heat	heat	NOUN
caryologia-232	122	8	and	and	CCONJ
caryologia-232	122	9	salt	salt	NOUN
caryologia-232	122	10	treatments	treatment	NOUN
caryologia-232	122	11	,	,	PUNCT
caryologia-232	122	12	for	for	ADP
caryologia-232	122	13	short	short	ADJ
caryologia-232	122	14	and	and	CCONJ
caryologia-232	122	15	prolonged	prolonged	ADJ
caryologia-232	122	16	times	time	NOUN
caryologia-232	122	17	.	.	PUNCT
caryologia-232	123	1	the	the	DET
caryologia-232	123	2	differences	difference	NOUN
caryologia-232	123	3	between	between	ADP
caryologia-232	123	4	control	control	NOUN
caryologia-232	123	5	and	and	CCONJ
caryologia-232	123	6	each	each	DET
caryologia-232	123	7	treatment	treatment	NOUN
caryologia-232	123	8	and	and	CCONJ
caryologia-232	123	9	between	between	ADP
caryologia-232	123	10	short	short	ADJ
caryologia-232	123	11	and	and	CCONJ
caryologia-232	123	12	prolonged	prolonged	ADJ
caryologia-232	123	13	stress	stress	NOUN
caryologia-232	123	14	treatments	treatment	NOUN
caryologia-232	123	15	were	be	AUX
caryologia-232	123	16	significant	significant	ADJ
caryologia-232	123	17	at	at	ADP
caryologia-232	123	18	p<0.001	p<0.001	X
caryologia-232	123	19	(	(	PUNCT
caryologia-232	123	20	*	*	PUNCT
caryologia-232	123	21	*	*	PUNCT
caryologia-232	123	22	*	*	PUNCT
caryologia-232	123	23	)	)	PUNCT
caryologia-232	123	24	,	,	PUNCT
caryologia-232	123	25	p<0.01	p<0.01	PROPN
caryologia-232	123	26	(	(	PUNCT
caryologia-232	123	27	*	*	PUNCT
caryologia-232	123	28	*	*	PUNCT
caryologia-232	123	29	)	)	PUNCT
caryologia-232	123	30	,	,	PUNCT
caryologia-232	123	31	p<0.05	p<0.05	NOUN
caryologia-232	123	32	(	(	PUNCT
caryologia-232	123	33	*	*	NOUN
caryologia-232	123	34	)	)	PUNCT
caryologia-232	123	35	,	,	PUNCT
caryologia-232	123	36	or	or	CCONJ
caryologia-232	123	37	not	not	PART
caryologia-232	123	38	significant	significant	ADJ
caryologia-232	123	39	(	(	PUNCT
caryologia-232	123	40	n.s	n.s	PROPN
caryologia-232	123	41	.	.	PROPN
caryologia-232	123	42	)	)	PUNCT
caryologia-232	124	1	according	accord	VERB
caryologia-232	124	2	to	to	ADP
caryologia-232	124	3	tukey	tukey	PROPN
caryologia-232	124	4	’s	’s	PART
caryologia-232	124	5	test	test	NOUN
caryologia-232	124	6	.	.	PUNCT
caryologia-232	125	1	fig	fig	NOUN
caryologia-232	125	2	.	.	PUNCT
caryologia-232	126	1	2	2	X
caryologia-232	126	2	.	.	X
caryologia-232	126	3	number	number	NOUN
caryologia-232	126	4	of	of	ADP
caryologia-232	126	5	expressed	express	VERB
caryologia-232	126	6	(	(	PUNCT
caryologia-232	126	7	mrpm	mrpm	ADJ
caryologia-232	126	8	>	>	X
caryologia-232	126	9	1	1	X
caryologia-232	126	10	)	)	PUNCT
caryologia-232	126	11	ltr	ltr	NOUN
caryologia-232	126	12	-	-	PUNCT
caryologia-232	126	13	res	re	NOUN
caryologia-232	126	14	in	in	ADP
caryologia-232	126	15	leaves	leave	NOUN
caryologia-232	126	16	of	of	ADP
caryologia-232	126	17	control	control	NOUN
caryologia-232	126	18	and	and	CCONJ
caryologia-232	126	19	stress	stress	NOUN
caryologia-232	126	20	-	-	PUNCT
caryologia-232	126	21	exposed	expose	VERB
caryologia-232	126	22	plants	plant	NOUN
caryologia-232	126	23	.	.	PUNCT
caryologia-232	127	1	stresses	stress	NOUN
caryologia-232	127	2	included	include	VERB
caryologia-232	127	3	cold	cold	ADJ
caryologia-232	127	4	,	,	PUNCT
caryologia-232	127	5	drought	drought	NOUN
caryologia-232	127	6	,	,	PUNCT
caryologia-232	127	7	heat	heat	NOUN
caryologia-232	127	8	and	and	CCONJ
caryologia-232	127	9	salt	salt	NOUN
caryologia-232	127	10	treatments	treatment	NOUN
caryologia-232	127	11	,	,	PUNCT
caryologia-232	127	12	for	for	ADP
caryologia-232	127	13	short	short	ADJ
caryologia-232	127	14	and	and	CCONJ
caryologia-232	127	15	prolonged	prolonged	ADJ
caryologia-232	127	16	times	time	NOUN
caryologia-232	127	17	.	.	PUNCT
caryologia-232	128	1	74	74	NUM
caryologia-232	128	2	alberto	alberto	PROPN
caryologia-232	128	3	vangelisti	vangelisti	PROPN
caryologia-232	128	4	et	et	PROPN
caryologia-232	128	5	al	al	PROPN
caryologia-232	128	6	.	.	PUNCT
caryologia-232	129	1	only	only	ADV
caryologia-232	129	2	two	two	NUM
caryologia-232	129	3	peaks	peak	NOUN
caryologia-232	129	4	(	(	PUNCT
caryologia-232	129	5	within	within	ADP
caryologia-232	129	6	lg	lg	PROPN
caryologia-232	129	7	i	i	PROPN
caryologia-232	129	8	and	and	CCONJ
caryologia-232	129	9	lg	lg	PROPN
caryologia-232	129	10	xix	xix	PROPN
caryologia-232	129	11	)	)	PUNCT
caryologia-232	129	12	were	be	AUX
caryologia-232	129	13	apparently	apparently	ADV
caryologia-232	129	14	more	more	ADV
caryologia-232	129	15	evident	evident	ADJ
caryologia-232	129	16	in	in	ADP
caryologia-232	129	17	the	the	DET
caryologia-232	129	18	expressed	express	VERB
caryologia-232	129	19	ltr	ltr	ADJ
caryologia-232	129	20	-	-	PUNCT
caryologia-232	129	21	res	re	NOUN
caryologia-232	129	22	profiles	profile	NOUN
caryologia-232	129	23	,	,	PUNCT
caryologia-232	129	24	indicating	indicate	VERB
caryologia-232	129	25	that	that	SCONJ
caryologia-232	129	26	res	re	NOUN
caryologia-232	129	27	at	at	ADP
caryologia-232	129	28	these	these	DET
caryologia-232	129	29	loci	locus	NOUN
caryologia-232	129	30	were	be	AUX
caryologia-232	129	31	particularly	particularly	ADV
caryologia-232	129	32	active	active	ADJ
caryologia-232	129	33	.	.	PUNCT
caryologia-232	130	1	in	in	ADP
caryologia-232	130	2	general	general	ADJ
caryologia-232	130	3	,	,	PUNCT
caryologia-232	130	4	it	it	PRON
caryologia-232	130	5	can	can	AUX
caryologia-232	130	6	be	be	AUX
caryologia-232	130	7	observed	observe	VERB
caryologia-232	130	8	that	that	SCONJ
caryologia-232	130	9	peaks	peak	NOUN
caryologia-232	130	10	in	in	ADP
caryologia-232	130	11	putative	putative	ADJ
caryologia-232	130	12	centromere	centromere	NOUN
caryologia-232	130	13	positions	position	NOUN
caryologia-232	130	14	were	be	AUX
caryologia-232	130	15	less	less	ADV
caryologia-232	130	16	evident	evident	ADJ
caryologia-232	130	17	in	in	ADP
caryologia-232	130	18	the	the	DET
caryologia-232	130	19	expressed	express	VERB
caryologia-232	130	20	ltr	ltr	PROPN
caryologia-232	130	21	-	-	PUNCT
caryologia-232	130	22	re	re	NOUN
caryologia-232	130	23	profiles	profile	NOUN
caryologia-232	130	24	,	,	PUNCT
caryologia-232	130	25	suggesting	suggest	VERB
caryologia-232	130	26	that	that	SCONJ
caryologia-232	130	27	centromere	centromere	NOUN
caryologia-232	130	28	ltr	ltr	NOUN
caryologia-232	130	29	-	-	PUNCT
caryologia-232	130	30	res	re	NOUN
caryologia-232	130	31	were	be	AUX
caryologia-232	130	32	less	less	ADV
caryologia-232	130	33	active	active	ADJ
caryologia-232	130	34	than	than	ADP
caryologia-232	130	35	elements	element	NOUN
caryologia-232	130	36	lying	lie	VERB
caryologia-232	130	37	at	at	ADP
caryologia-232	130	38	other	other	ADJ
caryologia-232	130	39	loci	loci	NOUN
caryologia-232	130	40	(	(	PUNCT
caryologia-232	130	41	fig	fig	NOUN
caryologia-232	130	42	.	.	PUNCT
caryologia-232	131	1	4	4	NUM
caryologia-232	131	2	)	)	PUNCT
caryologia-232	131	3	.	.	PUNCT
caryologia-232	132	1	influence	influence	NOUN
caryologia-232	132	2	of	of	ADP
caryologia-232	132	3	the	the	DET
caryologia-232	132	4	superfamily	superfamily	ADJ
caryologia-232	132	5	/	/	SYM
caryologia-232	132	6	lineage	lineage	NOUN
caryologia-232	132	7	of	of	ADP
caryologia-232	132	8	the	the	DET
caryologia-232	132	9	retrotransposon	retrotransposon	NOUN
caryologia-232	132	10	on	on	ADP
caryologia-232	132	11	its	its	PRON
caryologia-232	132	12	expression	expression	NOUN
caryologia-232	132	13	in	in	ADP
caryologia-232	132	14	order	order	NOUN
caryologia-232	132	15	to	to	PART
caryologia-232	132	16	assess	assess	VERB
caryologia-232	132	17	whether	whether	SCONJ
caryologia-232	132	18	the	the	DET
caryologia-232	132	19	expression	expression	NOUN
caryologia-232	132	20	of	of	ADP
caryologia-232	132	21	ltrres	ltrre	NOUN
caryologia-232	132	22	was	be	AUX
caryologia-232	132	23	related	relate	VERB
caryologia-232	132	24	to	to	ADP
caryologia-232	132	25	the	the	DET
caryologia-232	132	26	superfamily	superfamily	NOUN
caryologia-232	132	27	/	/	SYM
caryologia-232	132	28	lineage	lineage	NOUN
caryologia-232	132	29	to	to	PART
caryologia-232	132	30	which	which	PRON
caryologia-232	132	31	the	the	DET
caryologia-232	132	32	element	element	NOUN
caryologia-232	132	33	belonged	belong	VERB
caryologia-232	132	34	,	,	PUNCT
caryologia-232	132	35	ltr	ltr	ADJ
caryologia-232	132	36	-	-	PUNCT
caryologia-232	132	37	res	re	NOUN
caryologia-232	132	38	were	be	AUX
caryologia-232	132	39	subdivided	subdivide	VERB
caryologia-232	132	40	into	into	ADP
caryologia-232	132	41	lineages	lineage	NOUN
caryologia-232	132	42	and	and	CCONJ
caryologia-232	132	43	separated	separate	VERB
caryologia-232	132	44	among	among	ADP
caryologia-232	132	45	highly	highly	ADV
caryologia-232	132	46	expressed	express	VERB
caryologia-232	132	47	(	(	PUNCT
caryologia-232	132	48	i.e.	i.e.	X
caryologia-232	132	49	,	,	PUNCT
caryologia-232	132	50	mapped	map	VERB
caryologia-232	132	51	by	by	ADP
caryologia-232	132	52	more	more	ADJ
caryologia-232	132	53	than	than	ADP
caryologia-232	132	54	10	10	NUM
caryologia-232	132	55	reads	read	NOUN
caryologia-232	132	56	per	per	ADP
caryologia-232	132	57	million	million	NUM
caryologia-232	132	58	)	)	PUNCT
caryologia-232	132	59	,	,	PUNCT
caryologia-232	132	60	expressed	express	VERB
caryologia-232	132	61	(	(	PUNCT
caryologia-232	132	62	1	1	NUM
caryologia-232	132	63	-	-	SYM
caryologia-232	132	64	10	10	NUM
caryologia-232	132	65	mapped	map	VERB
caryologia-232	132	66	reads	read	NOUN
caryologia-232	132	67	per	per	ADP
caryologia-232	132	68	million	million	NUM
caryologia-232	132	69	)	)	PUNCT
caryologia-232	132	70	and	and	CCONJ
caryologia-232	132	71	not	not	PART
caryologia-232	132	72	expressed	express	VERB
caryologia-232	132	73	(	(	PUNCT
caryologia-232	132	74	less	less	ADJ
caryologia-232	132	75	than	than	ADP
caryologia-232	132	76	1	1	NUM
caryologia-232	132	77	mapped	map	VERB
caryologia-232	132	78	read	read	VERB
caryologia-232	132	79	per	per	ADP
caryologia-232	132	80	million	million	NUM
caryologia-232	132	81	)	)	PUNCT
caryologia-232	132	82	.	.	PUNCT
caryologia-232	133	1	gypsy	gypsy	PROPN
caryologia-232	133	2	elements	element	NOUN
caryologia-232	133	3	resulted	result	VERB
caryologia-232	133	4	more	more	ADV
caryologia-232	133	5	expressed	express	VERB
caryologia-232	133	6	than	than	ADP
caryologia-232	133	7	copia	copia	PROPN
caryologia-232	133	8	,	,	PUNCT
caryologia-232	133	9	in	in	ADP
caryologia-232	133	10	fact	fact	NOUN
caryologia-232	133	11	48	48	NUM
caryologia-232	133	12	out	out	ADP
caryologia-232	133	13	of	of	ADP
caryologia-232	133	14	417	417	NUM
caryologia-232	133	15	gypsy	gypsy	NOUN
caryologia-232	133	16	res	re	NOUN
caryologia-232	133	17	(	(	PUNCT
caryologia-232	133	18	11.5	11.5	NUM
caryologia-232	133	19	%	%	NOUN
caryologia-232	133	20	)	)	PUNCT
caryologia-232	133	21	were	be	AUX
caryologia-232	133	22	expressed	express	VERB
caryologia-232	133	23	,	,	PUNCT
caryologia-232	133	24	compared	compare	VERB
caryologia-232	133	25	to	to	ADP
caryologia-232	133	26	16	16	NUM
caryologia-232	133	27	out	out	ADP
caryologia-232	133	28	of	of	ADP
caryologia-232	133	29	368	368	NUM
caryologia-232	133	30	copia	copia	NOUN
caryologia-232	133	31	res	re	NOUN
caryologia-232	133	32	(	(	PUNCT
caryologia-232	133	33	4.4	4.4	NUM
caryologia-232	133	34	%	%	NOUN
caryologia-232	133	35	)	)	PUNCT
caryologia-232	133	36	.	.	PUNCT
caryologia-232	134	1	in	in	ADP
caryologia-232	134	2	general	general	ADJ
caryologia-232	134	3	,	,	PUNCT
caryologia-232	134	4	most	most	ADJ
caryologia-232	134	5	lineages	lineage	NOUN
caryologia-232	134	6	showed	show	VERB
caryologia-232	134	7	low	low	ADJ
caryologia-232	134	8	percentages	percentage	NOUN
caryologia-232	134	9	of	of	ADP
caryologia-232	134	10	highly	highly	ADV
caryologia-232	134	11	expressed	express	VERB
caryologia-232	134	12	or	or	CCONJ
caryologia-232	134	13	expressed	express	VERB
caryologia-232	134	14	ltr	ltr	ADJ
caryologia-232	134	15	-	-	PUNCT
caryologia-232	134	16	res	re	NOUN
caryologia-232	134	17	(	(	PUNCT
caryologia-232	134	18	fig	fig	NOUN
caryologia-232	134	19	.	.	PUNCT
caryologia-232	135	1	5	5	NUM
caryologia-232	135	2	)	)	PUNCT
caryologia-232	135	3	.	.	PUNCT
caryologia-232	136	1	however	however	ADV
caryologia-232	136	2	,	,	PUNCT
caryologia-232	136	3	for	for	ADP
caryologia-232	136	4	two	two	NUM
caryologia-232	136	5	copia	copia	NOUN
caryologia-232	136	6	lineages	lineage	NOUN
caryologia-232	136	7	(	(	PUNCT
caryologia-232	136	8	sire	sire	NOUN
caryologia-232	136	9	and	and	CCONJ
caryologia-232	136	10	tar	tar	NOUN
caryologia-232	136	11	/	/	SYM
caryologia-232	136	12	tork	tork	NOUN
caryologia-232	136	13	)	)	PUNCT
caryologia-232	136	14	and	and	CCONJ
caryologia-232	136	15	one	one	NUM
caryologia-232	136	16	gypsy	gypsy	NOUN
caryologia-232	136	17	lineage	lineage	NOUN
caryologia-232	136	18	(	(	PUNCT
caryologia-232	136	19	ogre	ogre	NOUN
caryologia-232	136	20	)	)	PUNCT
caryologia-232	136	21	the	the	DET
caryologia-232	136	22	majority	majority	NOUN
caryologia-232	136	23	of	of	ADP
caryologia-232	136	24	ltr	ltr	ADJ
caryologia-232	136	25	-	-	PUNCT
caryologia-232	136	26	res	re	NOUN
caryologia-232	136	27	resulted	result	VERB
caryologia-232	136	28	highly	highly	ADV
caryologia-232	136	29	expressed	express	VERB
caryologia-232	136	30	or	or	CCONJ
caryologia-232	136	31	expressed	express	VERB
caryologia-232	136	32	(	(	PUNCT
caryologia-232	136	33	fig	fig	NOUN
caryologia-232	136	34	.	.	PUNCT
caryologia-232	136	35	5	5	NUM
caryologia-232	136	36	)	)	PUNCT
caryologia-232	136	37	.	.	PUNCT
caryologia-232	137	1	in	in	ADP
caryologia-232	137	2	particular	particular	ADJ
caryologia-232	137	3	,	,	PUNCT
caryologia-232	137	4	the	the	DET
caryologia-232	137	5	ogre	ogre	NOUN
caryologia-232	137	6	lineage	lineage	NOUN
caryologia-232	137	7	showed	show	VERB
caryologia-232	137	8	the	the	DET
caryologia-232	137	9	highest	high	ADJ
caryologia-232	137	10	percentage	percentage	NOUN
caryologia-232	137	11	of	of	ADP
caryologia-232	137	12	expressed	express	VERB
caryologia-232	137	13	elements	element	NOUN
caryologia-232	137	14	.	.	PUNCT
caryologia-232	138	1	diffused	diffuse	VERB
caryologia-232	138	2	ltr	ltr	NOUN
caryologia-232	138	3	-	-	PUNCT
caryologia-232	138	4	re	re	NOUN
caryologia-232	138	5	expression	expression	NOUN
caryologia-232	138	6	was	be	AUX
caryologia-232	138	7	also	also	ADV
caryologia-232	138	8	observed	observe	VERB
caryologia-232	138	9	for	for	ADP
caryologia-232	138	10	those	those	DET
caryologia-232	138	11	elements	element	NOUN
caryologia-232	138	12	belonging	belong	VERB
caryologia-232	138	13	to	to	ADP
caryologia-232	138	14	the	the	DET
caryologia-232	138	15	gypsy	gypsy	NOUN
caryologia-232	138	16	superfamily	superfamily	ADV
caryologia-232	138	17	,	,	PUNCT
caryologia-232	138	18	but	but	CCONJ
caryologia-232	138	19	for	for	ADP
caryologia-232	138	20	which	which	PRON
caryologia-232	138	21	the	the	DET
caryologia-232	138	22	lineage	lineage	NOUN
caryologia-232	138	23	could	could	AUX
caryologia-232	138	24	not	not	PART
caryologia-232	138	25	be	be	AUX
caryologia-232	138	26	determined	determine	VERB
caryologia-232	138	27	.	.	PUNCT
caryologia-232	139	1	fig	fig	NOUN
caryologia-232	139	2	.	.	PUNCT
caryologia-232	140	1	3	3	X
caryologia-232	140	2	.	.	X
caryologia-232	140	3	relationship	relationship	NOUN
caryologia-232	140	4	between	between	ADP
caryologia-232	140	5	average	average	ADJ
caryologia-232	140	6	coverage	coverage	NOUN
caryologia-232	140	7	and	and	CCONJ
caryologia-232	140	8	rpkm	rpkm	VERB
caryologia-232	140	9	for	for	ADP
caryologia-232	140	10	each	each	PRON
caryologia-232	140	11	of	of	ADP
caryologia-232	140	12	828	828	NUM
caryologia-232	140	13	full	full	ADJ
caryologia-232	140	14	-	-	PUNCT
caryologia-232	140	15	length	length	NOUN
caryologia-232	140	16	ltr	ltr	NOUN
caryologia-232	140	17	-	-	PUNCT
caryologia-232	140	18	res	re	NOUN
caryologia-232	140	19	of	of	ADP
caryologia-232	140	20	p.	p.	PROPN
caryologia-232	140	21	trichocarpa	trichocarpa	NOUN
caryologia-232	140	22	.	.	PUNCT
caryologia-232	141	1	fig	fig	NOUN
caryologia-232	141	2	.	.	PUNCT
caryologia-232	142	1	4	4	X
caryologia-232	142	2	.	.	X
caryologia-232	142	3	percentage	percentage	NOUN
caryologia-232	142	4	of	of	ADP
caryologia-232	142	5	aligned	aligned	ADJ
caryologia-232	142	6	nucleotides	nucleotide	NOUN
caryologia-232	142	7	along	along	ADP
caryologia-232	142	8	p.	p.	PROPN
caryologia-232	142	9	trichocarpa	trichocarpa	PROPN
caryologia-232	142	10	lgs	lgs	NOUN
caryologia-232	142	11	using	use	VERB
caryologia-232	142	12	all	all	DET
caryologia-232	142	13	the	the	DET
caryologia-232	142	14	full	full	ADJ
caryologia-232	142	15	-	-	PUNCT
caryologia-232	142	16	length	length	NOUN
caryologia-232	142	17	ltr	ltr	NOUN
caryologia-232	142	18	-	-	PUNCT
caryologia-232	142	19	res	re	NOUN
caryologia-232	142	20	expressed	express	VERB
caryologia-232	142	21	in	in	ADP
caryologia-232	142	22	control	control	NOUN
caryologia-232	142	23	leaves	leave	NOUN
caryologia-232	142	24	,	,	PUNCT
caryologia-232	142	25	all	all	DET
caryologia-232	142	26	isolated	isolated	ADJ
caryologia-232	142	27	full	full	ADJ
caryologia-232	142	28	-	-	PUNCT
caryologia-232	142	29	length	length	NOUN
caryologia-232	142	30	ltr	ltr	NOUN
caryologia-232	142	31	-	-	PUNCT
caryologia-232	142	32	res	re	NOUN
caryologia-232	142	33	,	,	PUNCT
caryologia-232	142	34	all	all	DET
caryologia-232	142	35	isolated	isolated	ADJ
caryologia-232	142	36	chromovirus	chromovirus	NOUN
caryologia-232	142	37	res	re	NOUN
caryologia-232	142	38	and	and	CCONJ
caryologia-232	142	39	a	a	DET
caryologia-232	142	40	putative	putative	ADJ
caryologia-232	142	41	centromeric	centromeric	ADJ
caryologia-232	142	42	sequence	sequence	NOUN
caryologia-232	142	43	(	(	PUNCT
caryologia-232	142	44	in	in	ADP
caryologia-232	142	45	black	black	NOUN
caryologia-232	142	46	)	)	PUNCT
caryologia-232	142	47	.	.	PUNCT
caryologia-232	143	1	red	red	ADJ
caryologia-232	143	2	arrows	arrow	NOUN
caryologia-232	143	3	indicate	indicate	VERB
caryologia-232	143	4	the	the	DET
caryologia-232	143	5	putative	putative	ADJ
caryologia-232	143	6	position	position	NOUN
caryologia-232	143	7	of	of	ADP
caryologia-232	143	8	the	the	DET
caryologia-232	143	9	centromeres	centromere	NOUN
caryologia-232	143	10	.	.	PUNCT
caryologia-232	144	1	black	black	ADJ
caryologia-232	144	2	arrows	arrow	NOUN
caryologia-232	144	3	indicate	indicate	VERB
caryologia-232	144	4	minor	minor	ADJ
caryologia-232	144	5	peaks	peak	NOUN
caryologia-232	144	6	which	which	PRON
caryologia-232	144	7	are	be	AUX
caryologia-232	144	8	especially	especially	ADV
caryologia-232	144	9	evident	evident	ADJ
caryologia-232	144	10	in	in	ADP
caryologia-232	144	11	the	the	DET
caryologia-232	144	12	expressed	express	VERB
caryologia-232	144	13	ltr	ltr	ADJ
caryologia-232	144	14	-	-	PUNCT
caryologia-232	144	15	res	re	NOUN
caryologia-232	144	16	profiles	profile	NOUN
caryologia-232	144	17	or	or	CCONJ
caryologia-232	144	18	in	in	ADP
caryologia-232	144	19	the	the	DET
caryologia-232	144	20	profiles	profile	NOUN
caryologia-232	144	21	of	of	ADP
caryologia-232	144	22	all	all	DET
caryologia-232	144	23	ltr	ltr	ADJ
caryologia-232	144	24	-	-	PUNCT
caryologia-232	144	25	res	re	NOUN
caryologia-232	144	26	.	.	PUNCT
caryologia-232	145	1	fig	fig	NOUN
caryologia-232	145	2	.	.	PUNCT
caryologia-232	146	1	5	5	X
caryologia-232	146	2	.	.	X
caryologia-232	146	3	percentages	percentage	NOUN
caryologia-232	146	4	of	of	ADP
caryologia-232	146	5	highly	highly	ADV
caryologia-232	146	6	expressed	express	VERB
caryologia-232	146	7	(	(	PUNCT
caryologia-232	146	8	mrpm	mrpm	ADJ
caryologia-232	146	9	>	>	X
caryologia-232	146	10	10	10	NUM
caryologia-232	146	11	)	)	PUNCT
caryologia-232	146	12	,	,	PUNCT
caryologia-232	146	13	expressed	express	VERB
caryologia-232	146	14	(	(	PUNCT
caryologia-232	146	15	mrpm	mrpm	ADV
caryologia-232	146	16	ranging	range	VERB
caryologia-232	146	17	from	from	ADP
caryologia-232	146	18	1	1	NUM
caryologia-232	146	19	to	to	PART
caryologia-232	146	20	10	10	NUM
caryologia-232	146	21	)	)	PUNCT
caryologia-232	146	22	and	and	CCONJ
caryologia-232	146	23	unexpressed	unexpresse	VERB
caryologia-232	146	24	(	(	PUNCT
caryologia-232	146	25	mrpm	mrpm	ADJ
caryologia-232	146	26	<	<	X
caryologia-232	146	27	1	1	NUM
caryologia-232	146	28	)	)	PUNCT
caryologia-232	146	29	ltrres	ltrre	NOUN
caryologia-232	146	30	,	,	PUNCT
caryologia-232	146	31	distinguished	distinguish	VERB
caryologia-232	146	32	among	among	ADP
caryologia-232	146	33	ltr	ltr	PROPN
caryologia-232	146	34	-	-	PUNCT
caryologia-232	146	35	re	re	NOUN
caryologia-232	146	36	superfamilies	superfamily	NOUN
caryologia-232	146	37	and	and	CCONJ
caryologia-232	146	38	lineages	lineage	NOUN
caryologia-232	146	39	.	.	PUNCT
caryologia-232	147	1	75genome	75genome	NUM
caryologia-232	148	1	analysis	analysis	NOUN
caryologia-232	148	2	of	of	ADP
caryologia-232	148	3	long	long	ADJ
caryologia-232	148	4	-	-	PUNCT
caryologia-232	148	5	terminal	terminal	ADJ
caryologia-232	148	6	-	-	PUNCT
caryologia-232	148	7	repeat	repeat	NOUN
caryologia-232	148	8	retrotransposon	retrotransposon	NOUN
caryologia-232	148	9	transcription	transcription	NOUN
caryologia-232	148	10	in	in	ADP
caryologia-232	148	11	leaves	leave	NOUN
caryologia-232	148	12	of	of	ADP
caryologia-232	148	13	populus	populus	ADJ
caryologia-232	148	14	trichocarpa	trichocarpa	NOUN
caryologia-232	148	15	stress	stress	NOUN
caryologia-232	148	16	-	-	PUNCT
caryologia-232	148	17	specific	specific	ADJ
caryologia-232	148	18	induction	induction	NOUN
caryologia-232	148	19	of	of	ADP
caryologia-232	148	20	retrotransposons	retrotransposon	NOUN
caryologia-232	148	21	expression	expression	NOUN
caryologia-232	148	22	most	most	ADJ
caryologia-232	148	23	ltr	ltr	ADJ
caryologia-232	148	24	-	-	PUNCT
caryologia-232	148	25	res	re	NOUN
caryologia-232	148	26	which	which	PRON
caryologia-232	148	27	were	be	AUX
caryologia-232	148	28	expressed	express	VERB
caryologia-232	148	29	in	in	ADP
caryologia-232	148	30	control	control	NOUN
caryologia-232	148	31	leaves	leave	NOUN
caryologia-232	148	32	were	be	AUX
caryologia-232	148	33	also	also	ADV
caryologia-232	148	34	expressed	express	VERB
caryologia-232	148	35	in	in	ADP
caryologia-232	148	36	leaves	leave	NOUN
caryologia-232	148	37	of	of	ADP
caryologia-232	148	38	stress	stress	NOUN
caryologia-232	148	39	exposed	expose	VERB
caryologia-232	148	40	plants	plant	NOUN
caryologia-232	148	41	.	.	PUNCT
caryologia-232	149	1	of	of	ADP
caryologia-232	149	2	313	313	NUM
caryologia-232	149	3	ltr	ltr	ADJ
caryologia-232	149	4	-	-	PUNCT
caryologia-232	149	5	res	re	NOUN
caryologia-232	149	6	expressed	express	VERB
caryologia-232	149	7	(	(	PUNCT
caryologia-232	149	8	mrpm	mrpm	ADJ
caryologia-232	149	9	>	>	X
caryologia-232	149	10	1	1	NUM
caryologia-232	149	11	)	)	PUNCT
caryologia-232	149	12	in	in	ADP
caryologia-232	149	13	controls	control	NOUN
caryologia-232	149	14	and/or	and/or	CCONJ
caryologia-232	149	15	in	in	ADP
caryologia-232	149	16	different	different	ADJ
caryologia-232	149	17	stresses	stress	NOUN
caryologia-232	149	18	,	,	PUNCT
caryologia-232	149	19	only	only	ADV
caryologia-232	149	20	4	4	NUM
caryologia-232	149	21	(	(	PUNCT
caryologia-232	149	22	1.3	1.3	NUM
caryologia-232	149	23	%	%	NOUN
caryologia-232	149	24	)	)	PUNCT
caryologia-232	149	25	were	be	AUX
caryologia-232	149	26	expressed	express	VERB
caryologia-232	149	27	only	only	ADV
caryologia-232	149	28	in	in	ADP
caryologia-232	149	29	controls	control	NOUN
caryologia-232	149	30	and	and	CCONJ
caryologia-232	149	31	81	81	NUM
caryologia-232	149	32	(	(	PUNCT
caryologia-232	149	33	25.9	25.9	NUM
caryologia-232	149	34	%	%	NOUN
caryologia-232	149	35	)	)	PUNCT
caryologia-232	149	36	were	be	AUX
caryologia-232	149	37	specifically	specifically	ADV
caryologia-232	149	38	activated	activate	VERB
caryologia-232	149	39	by	by	ADP
caryologia-232	149	40	one	one	NUM
caryologia-232	149	41	or	or	CCONJ
caryologia-232	149	42	more	more	ADJ
caryologia-232	149	43	stresses	stress	NOUN
caryologia-232	149	44	.	.	PUNCT
caryologia-232	150	1	figure	figure	VERB
caryologia-232	150	2	6	6	NUM
caryologia-232	150	3	reports	report	NOUN
caryologia-232	150	4	the	the	DET
caryologia-232	150	5	number	number	NOUN
caryologia-232	150	6	of	of	ADP
caryologia-232	150	7	ltr	ltr	ADJ
caryologia-232	150	8	-	-	PUNCT
caryologia-232	150	9	res	re	NOUN
caryologia-232	150	10	expressed	express	VERB
caryologia-232	150	11	(	(	PUNCT
caryologia-232	150	12	i.e.	i.e.	X
caryologia-232	150	13	with	with	ADP
caryologia-232	150	14	more	more	ADJ
caryologia-232	150	15	than	than	ADP
caryologia-232	150	16	one	one	NUM
caryologia-232	150	17	mapped	map	VERB
caryologia-232	150	18	read	read	VERB
caryologia-232	150	19	per	per	ADP
caryologia-232	150	20	million	million	NUM
caryologia-232	150	21	)	)	PUNCT
caryologia-232	150	22	after	after	ADP
caryologia-232	150	23	different	different	ADJ
caryologia-232	150	24	stresses	stress	NOUN
caryologia-232	150	25	(	(	PUNCT
caryologia-232	150	26	in	in	ADP
caryologia-232	150	27	both	both	CCONJ
caryologia-232	150	28	short	short	ADJ
caryologia-232	150	29	and	and	CCONJ
caryologia-232	150	30	prolonged	prolonged	ADJ
caryologia-232	150	31	treatments	treatment	NOUN
caryologia-232	150	32	)	)	PUNCT
caryologia-232	150	33	.	.	PUNCT
caryologia-232	151	1	of	of	ADP
caryologia-232	151	2	264	264	NUM
caryologia-232	151	3	ltrres	ltrre	NOUN
caryologia-232	151	4	expressed	express	VERB
caryologia-232	151	5	during	during	ADP
caryologia-232	151	6	one	one	NUM
caryologia-232	151	7	or	or	CCONJ
caryologia-232	151	8	more	more	ADJ
caryologia-232	151	9	stresses	stress	NOUN
caryologia-232	151	10	,	,	PUNCT
caryologia-232	151	11	87	87	NUM
caryologia-232	151	12	(	(	PUNCT
caryologia-232	151	13	33.0	33.0	NUM
caryologia-232	151	14	%	%	NOUN
caryologia-232	151	15	)	)	PUNCT
caryologia-232	151	16	were	be	AUX
caryologia-232	151	17	active	active	ADJ
caryologia-232	151	18	under	under	ADP
caryologia-232	151	19	each	each	DET
caryologia-232	151	20	stress	stress	NOUN
caryologia-232	151	21	.	.	PUNCT
caryologia-232	152	1	fifty	fifty	NUM
caryologia-232	152	2	-	-	PUNCT
caryologia-232	152	3	six	six	NUM
caryologia-232	152	4	elements	element	NOUN
caryologia-232	152	5	(	(	PUNCT
caryologia-232	152	6	21.2	21.2	NUM
caryologia-232	152	7	%	%	NOUN
caryologia-232	152	8	)	)	PUNCT
caryologia-232	152	9	were	be	AUX
caryologia-232	152	10	specifically	specifically	ADV
caryologia-232	152	11	active	active	ADJ
caryologia-232	152	12	during	during	ADP
caryologia-232	152	13	drought	drought	NOUN
caryologia-232	152	14	treatments	treatment	NOUN
caryologia-232	152	15	,	,	PUNCT
caryologia-232	152	16	30	30	NUM
caryologia-232	152	17	(	(	PUNCT
caryologia-232	152	18	11.4	11.4	NUM
caryologia-232	152	19	%	%	NOUN
caryologia-232	152	20	)	)	PUNCT
caryologia-232	152	21	during	during	ADP
caryologia-232	152	22	salt	salt	NOUN
caryologia-232	152	23	treatments	treatment	NOUN
caryologia-232	152	24	and	and	CCONJ
caryologia-232	152	25	35	35	NUM
caryologia-232	152	26	(	(	PUNCT
caryologia-232	152	27	13.3	13.3	NUM
caryologia-232	152	28	%	%	NOUN
caryologia-232	152	29	)	)	PUNCT
caryologia-232	152	30	during	during	ADP
caryologia-232	152	31	both	both	CCONJ
caryologia-232	152	32	drought	drought	NOUN
caryologia-232	152	33	and	and	CCONJ
caryologia-232	152	34	salt	salt	NOUN
caryologia-232	152	35	stresses	stress	NOUN
caryologia-232	152	36	,	,	PUNCT
caryologia-232	152	37	indicating	indicate	VERB
caryologia-232	152	38	that	that	SCONJ
caryologia-232	152	39	these	these	DET
caryologia-232	152	40	treatments	treatment	NOUN
caryologia-232	152	41	were	be	AUX
caryologia-232	152	42	the	the	DET
caryologia-232	152	43	most	most	ADV
caryologia-232	152	44	effective	effective	ADJ
caryologia-232	152	45	in	in	ADP
caryologia-232	152	46	inducing	induce	VERB
caryologia-232	152	47	ltrre	ltrre	ADJ
caryologia-232	152	48	expression	expression	NOUN
caryologia-232	152	49	.	.	PUNCT
caryologia-232	153	1	on	on	ADP
caryologia-232	153	2	the	the	DET
caryologia-232	153	3	contrary	contrary	ADJ
caryologia-232	153	4	,	,	PUNCT
caryologia-232	153	5	cold	cold	ADJ
caryologia-232	153	6	and	and	CCONJ
caryologia-232	153	7	heat	heat	NOUN
caryologia-232	153	8	stresses	stress	NOUN
caryologia-232	153	9	induced	induce	VERB
caryologia-232	153	10	only	only	ADV
caryologia-232	153	11	a	a	DET
caryologia-232	153	12	limited	limited	ADJ
caryologia-232	153	13	number	number	NOUN
caryologia-232	153	14	of	of	ADP
caryologia-232	153	15	ltr	ltr	ADJ
caryologia-232	153	16	-	-	PUNCT
caryologia-232	153	17	res	re	NOUN
caryologia-232	153	18	(	(	PUNCT
caryologia-232	153	19	fig	fig	NOUN
caryologia-232	153	20	.	.	PUNCT
caryologia-232	153	21	6	6	NUM
caryologia-232	153	22	)	)	PUNCT
caryologia-232	153	23	.	.	PUNCT
caryologia-232	154	1	we	we	PRON
caryologia-232	154	2	also	also	ADV
caryologia-232	154	3	analysed	analyse	VERB
caryologia-232	154	4	differential	differential	ADJ
caryologia-232	154	5	expression	expression	NOUN
caryologia-232	154	6	of	of	ADP
caryologia-232	154	7	ltrres	ltrre	NOUN
caryologia-232	154	8	during	during	ADP
caryologia-232	154	9	the	the	DET
caryologia-232	154	10	different	different	ADJ
caryologia-232	154	11	stresses	stress	NOUN
caryologia-232	154	12	compared	compare	VERB
caryologia-232	154	13	to	to	ADP
caryologia-232	154	14	the	the	DET
caryologia-232	154	15	controls	control	NOUN
caryologia-232	154	16	.	.	PUNCT
caryologia-232	155	1	considering	consider	VERB
caryologia-232	155	2	only	only	ADV
caryologia-232	155	3	the	the	DET
caryologia-232	155	4	72	72	NUM
caryologia-232	155	5	highly	highly	ADV
caryologia-232	155	6	expressed	express	VERB
caryologia-232	155	7	elements	element	NOUN
caryologia-232	155	8	(	(	PUNCT
caryologia-232	155	9	mrpm	mrpm	ADJ
caryologia-232	155	10	>	>	X
caryologia-232	155	11	10	10	NUM
caryologia-232	155	12	)	)	PUNCT
caryologia-232	155	13	,	,	PUNCT
caryologia-232	155	14	70	70	NUM
caryologia-232	155	15	showed	show	VERB
caryologia-232	155	16	differential	differential	ADJ
caryologia-232	155	17	expression	expression	NOUN
caryologia-232	155	18	(	(	PUNCT
caryologia-232	155	19	fold	fold	VERB
caryologia-232	155	20	change	change	NOUN
caryologia-232	155	21	>	>	X
caryologia-232	155	22	2	2	NUM
caryologia-232	155	23	,	,	PUNCT
caryologia-232	155	24	fdr	fdr	PROPN
caryologia-232	155	25	-	-	PUNCT
caryologia-232	155	26	corrected	correct	VERB
caryologia-232	155	27	p	p	X
caryologia-232	155	28	<	<	X
caryologia-232	155	29	0.05	0.05	NUM
caryologia-232	155	30	)	)	PUNCT
caryologia-232	155	31	in	in	ADP
caryologia-232	155	32	at	at	ADV
caryologia-232	155	33	least	least	ADV
caryologia-232	155	34	one	one	NUM
caryologia-232	155	35	treatment	treatment	NOUN
caryologia-232	155	36	(	(	PUNCT
caryologia-232	155	37	fig	fig	NOUN
caryologia-232	155	38	.	.	PUNCT
caryologia-232	155	39	7	7	NUM
caryologia-232	155	40	)	)	PUNCT
caryologia-232	155	41	.	.	PUNCT
caryologia-232	156	1	no	no	DET
caryologia-232	156	2	elements	element	NOUN
caryologia-232	156	3	were	be	AUX
caryologia-232	156	4	differentially	differentially	ADV
caryologia-232	156	5	expressed	express	VERB
caryologia-232	156	6	along	along	ADP
caryologia-232	156	7	all	all	DET
caryologia-232	156	8	treatments	treatment	NOUN
caryologia-232	156	9	.	.	PUNCT
caryologia-232	157	1	in	in	ADP
caryologia-232	157	2	most	most	ADJ
caryologia-232	157	3	cases	case	NOUN
caryologia-232	157	4	,	,	PUNCT
caryologia-232	157	5	the	the	DET
caryologia-232	157	6	same	same	ADJ
caryologia-232	157	7	ltr	ltr	NOUN
caryologia-232	157	8	-	-	PUNCT
caryologia-232	157	9	re	re	NOUN
caryologia-232	157	10	was	be	AUX
caryologia-232	157	11	under	under	ADV
caryologia-232	157	12	-	-	PUNCT
caryologia-232	157	13	expressed	express	VERB
caryologia-232	157	14	(	(	PUNCT
caryologia-232	157	15	blue	blue	ADJ
caryologia-232	157	16	in	in	ADP
caryologia-232	157	17	fig	fig	NOUN
caryologia-232	157	18	.	.	PUNCT
caryologia-232	158	1	7	7	NUM
caryologia-232	158	2	)	)	PUNCT
caryologia-232	158	3	or	or	CCONJ
caryologia-232	158	4	unaffected	unaffected	ADJ
caryologia-232	158	5	(	(	PUNCT
caryologia-232	158	6	white	white	ADJ
caryologia-232	158	7	in	in	ADP
caryologia-232	158	8	fig	fig	NOUN
caryologia-232	158	9	.	.	PUNCT
caryologia-232	159	1	7	7	NUM
caryologia-232	159	2	)	)	PUNCT
caryologia-232	159	3	during	during	ADP
caryologia-232	159	4	the	the	DET
caryologia-232	159	5	different	different	ADJ
caryologia-232	159	6	stresses	stress	NOUN
caryologia-232	159	7	.	.	PUNCT
caryologia-232	160	1	only	only	ADV
caryologia-232	160	2	7	7	NUM
caryologia-232	160	3	ltr	ltr	ADJ
caryologia-232	160	4	-	-	PUNCT
caryologia-232	160	5	res	re	NOUN
caryologia-232	160	6	were	be	AUX
caryologia-232	160	7	induced	induce	VERB
caryologia-232	160	8	(	(	PUNCT
caryologia-232	160	9	red	red	ADJ
caryologia-232	160	10	in	in	ADP
caryologia-232	160	11	fig	fig	NOUN
caryologia-232	160	12	.	.	PUNCT
caryologia-232	161	1	7	7	NUM
caryologia-232	161	2	)	)	PUNCT
caryologia-232	161	3	or	or	CCONJ
caryologia-232	161	4	unaffected	unaffected	ADJ
caryologia-232	161	5	.	.	PUNCT
caryologia-232	162	1	thirteen	thirteen	NUM
caryologia-232	162	2	elements	element	NOUN
caryologia-232	162	3	were	be	AUX
caryologia-232	162	4	repressed	repress	VERB
caryologia-232	162	5	by	by	ADP
caryologia-232	162	6	certain	certain	ADJ
caryologia-232	162	7	treatments	treatment	NOUN
caryologia-232	162	8	,	,	PUNCT
caryologia-232	162	9	activated	activate	VERB
caryologia-232	162	10	by	by	ADP
caryologia-232	162	11	other	other	ADJ
caryologia-232	162	12	,	,	PUNCT
caryologia-232	162	13	or	or	CCONJ
caryologia-232	162	14	unaffected	unaffected	ADJ
caryologia-232	162	15	(	(	PUNCT
caryologia-232	162	16	blue	blue	ADJ
caryologia-232	162	17	,	,	PUNCT
caryologia-232	162	18	red	red	ADJ
caryologia-232	162	19	,	,	PUNCT
caryologia-232	162	20	or	or	CCONJ
caryologia-232	162	21	white	white	ADJ
caryologia-232	162	22	in	in	ADP
caryologia-232	162	23	fig	fig	NOUN
caryologia-232	162	24	.	.	PUNCT
caryologia-232	163	1	7	7	NUM
caryologia-232	163	2	)	)	PUNCT
caryologia-232	163	3	.	.	PUNCT
caryologia-232	164	1	discussion	discussion	NOUN
caryologia-232	164	2	availability	availability	NOUN
caryologia-232	164	3	of	of	ADP
caryologia-232	164	4	the	the	DET
caryologia-232	164	5	updated	update	VERB
caryologia-232	164	6	sequence	sequence	NOUN
caryologia-232	164	7	of	of	ADP
caryologia-232	164	8	the	the	DET
caryologia-232	164	9	p.	p.	NOUN
caryologia-232	164	10	trichocarpa	trichocarpa	NOUN
caryologia-232	164	11	genome	genome	NOUN
caryologia-232	164	12	and	and	CCONJ
caryologia-232	164	13	of	of	ADP
caryologia-232	164	14	genomic	genomic	ADJ
caryologia-232	164	15	dna	dna	PROPN
caryologia-232	164	16	and	and	CCONJ
caryologia-232	164	17	cdna	cdna	PROPN
caryologia-232	164	18	libraries	library	NOUN
caryologia-232	164	19	obtained	obtain	VERB
caryologia-232	164	20	from	from	ADP
caryologia-232	164	21	plants	plant	NOUN
caryologia-232	164	22	of	of	ADP
caryologia-232	164	23	the	the	DET
caryologia-232	164	24	same	same	ADJ
caryologia-232	164	25	genotype	genotype	NOUN
caryologia-232	164	26	and	and	CCONJ
caryologia-232	164	27	subjected	subject	VERB
caryologia-232	164	28	to	to	ADP
caryologia-232	164	29	different	different	ADJ
caryologia-232	164	30	treatments	treatment	NOUN
caryologia-232	164	31	,	,	PUNCT
caryologia-232	164	32	allowed	allow	VERB
caryologia-232	164	33	us	we	PRON
caryologia-232	164	34	to	to	PART
caryologia-232	164	35	evaluate	evaluate	VERB
caryologia-232	164	36	several	several	ADJ
caryologia-232	164	37	factors	factor	NOUN
caryologia-232	164	38	which	which	PRON
caryologia-232	164	39	can	can	AUX
caryologia-232	164	40	influence	influence	VERB
caryologia-232	164	41	the	the	DET
caryologia-232	164	42	expression	expression	NOUN
caryologia-232	164	43	of	of	ADP
caryologia-232	164	44	ltr	ltr	NOUN
caryologia-232	164	45	-	-	PUNCT
caryologia-232	164	46	res	re	NOUN
caryologia-232	164	47	in	in	ADP
caryologia-232	164	48	this	this	DET
caryologia-232	164	49	species	specie	NOUN
caryologia-232	164	50	.	.	PUNCT
caryologia-232	165	1	in	in	ADP
caryologia-232	165	2	general	general	ADJ
caryologia-232	165	3	,	,	PUNCT
caryologia-232	165	4	our	our	PRON
caryologia-232	165	5	data	datum	NOUN
caryologia-232	165	6	confirmed	confirm	VERB
caryologia-232	165	7	that	that	SCONJ
caryologia-232	165	8	the	the	DET
caryologia-232	165	9	expression	expression	NOUN
caryologia-232	165	10	of	of	ADP
caryologia-232	165	11	retrotransposons	retrotransposon	NOUN
caryologia-232	165	12	is	be	AUX
caryologia-232	165	13	generally	generally	ADV
caryologia-232	165	14	limited	limited	ADJ
caryologia-232	165	15	:	:	PUNCT
caryologia-232	165	16	only	only	ADV
caryologia-232	165	17	72	72	NUM
caryologia-232	165	18	out	out	ADP
caryologia-232	165	19	of	of	ADP
caryologia-232	165	20	828	828	NUM
caryologia-232	165	21	ltr	ltr	ADJ
caryologia-232	165	22	-	-	PUNCT
caryologia-232	165	23	res	re	NOUN
caryologia-232	165	24	were	be	AUX
caryologia-232	165	25	mapped	map	VERB
caryologia-232	165	26	by	by	ADP
caryologia-232	165	27	more	more	ADJ
caryologia-232	165	28	than	than	ADP
caryologia-232	165	29	ten	ten	NUM
caryologia-232	165	30	reads	read	NOUN
caryologia-232	165	31	per	per	ADP
caryologia-232	165	32	million	million	NUM
caryologia-232	165	33	.	.	PUNCT
caryologia-232	166	1	the	the	DET
caryologia-232	166	2	transcription	transcription	NOUN
caryologia-232	166	3	of	of	ADP
caryologia-232	166	4	res	re	NOUN
caryologia-232	166	5	have	have	AUX
caryologia-232	166	6	been	be	AUX
caryologia-232	166	7	reported	report	VERB
caryologia-232	166	8	in	in	ADP
caryologia-232	166	9	tissues	tissue	NOUN
caryologia-232	166	10	and	and	CCONJ
caryologia-232	166	11	organs	organ	NOUN
caryologia-232	166	12	of	of	ADP
caryologia-232	166	13	many	many	ADJ
caryologia-232	166	14	plant	plant	NOUN
caryologia-232	166	15	species	specie	NOUN
caryologia-232	166	16	(	(	PUNCT
caryologia-232	166	17	grandbastien	grandbastien	NOUN
caryologia-232	166	18	2015	2015	NUM
caryologia-232	166	19	)	)	PUNCT
caryologia-232	166	20	,	,	PUNCT
caryologia-232	166	21	related	relate	VERB
caryologia-232	166	22	to	to	ADP
caryologia-232	166	23	biotic	biotic	ADJ
caryologia-232	166	24	and	and	CCONJ
caryologia-232	166	25	abiotic	abiotic	ADJ
caryologia-232	166	26	stresses	stress	NOUN
caryologia-232	166	27	or	or	CCONJ
caryologia-232	166	28	even	even	ADV
caryologia-232	166	29	without	without	ADP
caryologia-232	166	30	apparent	apparent	ADJ
caryologia-232	166	31	induction	induction	NOUN
caryologia-232	166	32	.	.	PUNCT
caryologia-232	167	1	in	in	ADP
caryologia-232	167	2	rice	rice	NOUN
caryologia-232	167	3	,	,	PUNCT
caryologia-232	167	4	sunflower	sunflower	NOUN
caryologia-232	167	5	,	,	PUNCT
caryologia-232	167	6	citrus	citrus	NOUN
caryologia-232	167	7	sinensis	sinensis	NOUN
caryologia-232	167	8	,	,	PUNCT
caryologia-232	167	9	and	and	CCONJ
caryologia-232	167	10	even	even	ADV
caryologia-232	167	11	in	in	ADP
caryologia-232	167	12	poplars	poplar	NOUN
caryologia-232	167	13	certain	certain	ADJ
caryologia-232	167	14	ltr	ltr	NOUN
caryologia-232	167	15	-	-	PUNCT
caryologia-232	167	16	res	re	NOUN
caryologia-232	167	17	are	be	AUX
caryologia-232	167	18	actively	actively	ADV
caryologia-232	167	19	transcribed	transcribe	VERB
caryologia-232	167	20	(	(	PUNCT
caryologia-232	167	21	rico	rico	NOUN
caryologia-232	167	22	-	-	PUNCT
caryologia-232	167	23	cabanas	cabanas	PROPN
caryologia-232	167	24	and	and	CCONJ
caryologia-232	167	25	martínez	martínez	NOUN
caryologia-232	167	26	-	-	PUNCT
caryologia-232	167	27	izquierdo	izquierdo	PROPN
caryologia-232	167	28	fig	fig	NOUN
caryologia-232	167	29	.	.	PUNCT
caryologia-232	168	1	6	6	NUM
caryologia-232	168	2	.	.	X
caryologia-232	169	1	venn	venn	PROPN
caryologia-232	169	2	diagram	diagram	PROPN
caryologia-232	169	3	of	of	ADP
caryologia-232	169	4	expressed	express	VERB
caryologia-232	169	5	(	(	PUNCT
caryologia-232	169	6	mrpm	mrpm	ADJ
caryologia-232	169	7	>	>	X
caryologia-232	169	8	1	1	X
caryologia-232	169	9	)	)	PUNCT
caryologia-232	169	10	ltr	ltr	NOUN
caryologia-232	169	11	-	-	PUNCT
caryologia-232	169	12	res	re	NOUN
caryologia-232	169	13	in	in	ADP
caryologia-232	169	14	the	the	DET
caryologia-232	169	15	four	four	NUM
caryologia-232	169	16	stresses	stress	NOUN
caryologia-232	169	17	used	use	VERB
caryologia-232	169	18	in	in	ADP
caryologia-232	169	19	these	these	DET
caryologia-232	169	20	experiments	experiment	NOUN
caryologia-232	169	21	(	(	PUNCT
caryologia-232	169	22	d	d	NOUN
caryologia-232	169	23	=	=	SYM
caryologia-232	169	24	drought	drought	NOUN
caryologia-232	169	25	;	;	PUNCT
caryologia-232	169	26	h	h	NOUN
caryologia-232	169	27	=	=	NOUN
caryologia-232	169	28	heat	heat	NOUN
caryologia-232	169	29	;	;	PUNCT
caryologia-232	169	30	c	c	NOUN
caryologia-232	169	31	=	=	SYM
caryologia-232	169	32	cold	cold	ADJ
caryologia-232	169	33	;	;	PUNCT
caryologia-232	169	34	s	s	NOUN
caryologia-232	169	35	=	=	NOUN
caryologia-232	169	36	salt	salt	NOUN
caryologia-232	169	37	)	)	PUNCT
caryologia-232	169	38	.	.	PUNCT
caryologia-232	170	1	results	result	NOUN
caryologia-232	170	2	of	of	ADP
caryologia-232	170	3	short	short	ADJ
caryologia-232	170	4	and	and	CCONJ
caryologia-232	170	5	prolonged	prolonged	ADJ
caryologia-232	170	6	treatments	treatment	NOUN
caryologia-232	170	7	were	be	AUX
caryologia-232	170	8	cumulated	cumulate	VERB
caryologia-232	170	9	for	for	ADP
caryologia-232	170	10	each	each	DET
caryologia-232	170	11	stress	stress	NOUN
caryologia-232	170	12	.	.	PUNCT
caryologia-232	171	1	fig	fig	NOUN
caryologia-232	171	2	.	.	PUNCT
caryologia-232	172	1	7	7	X
caryologia-232	172	2	.	.	NOUN
caryologia-232	172	3	differential	differential	ADJ
caryologia-232	172	4	expression	expression	NOUN
caryologia-232	172	5	(	(	PUNCT
caryologia-232	172	6	fold	fold	VERB
caryologia-232	172	7	change	change	NOUN
caryologia-232	172	8	>	>	X
caryologia-232	172	9	2	2	NUM
caryologia-232	172	10	,	,	PUNCT
caryologia-232	172	11	fdr	fdr	PROPN
caryologia-232	172	12	-	-	PUNCT
caryologia-232	172	13	corrected	correct	VERB
caryologia-232	172	14	p	p	X
caryologia-232	172	15	<	<	X
caryologia-232	172	16	0.05	0.05	NUM
caryologia-232	172	17	)	)	PUNCT
caryologia-232	172	18	of	of	ADP
caryologia-232	172	19	ltr	ltr	ADJ
caryologia-232	172	20	-	-	PUNCT
caryologia-232	172	21	res	re	NOUN
caryologia-232	172	22	after	after	ADP
caryologia-232	172	23	short	short	ADJ
caryologia-232	172	24	(	(	PUNCT
caryologia-232	172	25	s	s	NOUN
caryologia-232	172	26	)	)	PUNCT
caryologia-232	172	27	or	or	CCONJ
caryologia-232	172	28	prolonged	prolong	VERB
caryologia-232	172	29	(	(	PUNCT
caryologia-232	172	30	p	p	NOUN
caryologia-232	172	31	)	)	PUNCT
caryologia-232	172	32	treatments	treatment	NOUN
caryologia-232	172	33	with	with	ADP
caryologia-232	172	34	different	different	ADJ
caryologia-232	172	35	stresses	stress	NOUN
caryologia-232	172	36	compared	compare	VERB
caryologia-232	172	37	to	to	ADP
caryologia-232	172	38	controls	control	NOUN
caryologia-232	172	39	.	.	PUNCT
caryologia-232	173	1	blue	blue	ADJ
caryologia-232	173	2	cells	cell	NOUN
caryologia-232	173	3	refer	refer	VERB
caryologia-232	173	4	to	to	ADP
caryologia-232	173	5	underexpression	underexpression	NOUN
caryologia-232	173	6	,	,	PUNCT
caryologia-232	173	7	red	red	ADJ
caryologia-232	173	8	cells	cell	NOUN
caryologia-232	173	9	to	to	ADP
caryologia-232	173	10	over	over	ADP
caryologia-232	173	11	-	-	PUNCT
caryologia-232	173	12	expression	expression	NOUN
caryologia-232	173	13	,	,	PUNCT
caryologia-232	173	14	white	white	ADJ
caryologia-232	173	15	cells	cell	NOUN
caryologia-232	173	16	indicate	indicate	VERB
caryologia-232	173	17	no	no	DET
caryologia-232	173	18	effect	effect	NOUN
caryologia-232	173	19	of	of	ADP
caryologia-232	173	20	the	the	DET
caryologia-232	173	21	treatment	treatment	NOUN
caryologia-232	173	22	in	in	ADP
caryologia-232	173	23	comparison	comparison	NOUN
caryologia-232	173	24	to	to	ADP
caryologia-232	173	25	control	control	NOUN
caryologia-232	173	26	.	.	PUNCT
caryologia-232	174	1	76	76	NUM
caryologia-232	174	2	alberto	alberto	PROPN
caryologia-232	174	3	vangelisti	vangelisti	PROPN
caryologia-232	174	4	et	et	PROPN
caryologia-232	174	5	al	al	PROPN
caryologia-232	174	6	.	.	PROPN
caryologia-232	174	7	2007	2007	NUM
caryologia-232	174	8	;	;	PUNCT
caryologia-232	174	9	vukich	vukich	ADJ
caryologia-232	174	10	et	et	PROPN
caryologia-232	174	11	al	al	PROPN
caryologia-232	174	12	.	.	PROPN
caryologia-232	174	13	2009	2009	NUM
caryologia-232	174	14	;	;	PUNCT
caryologia-232	174	15	gao	gao	PROPN
caryologia-232	174	16	et	et	PROPN
caryologia-232	174	17	al	al	PROPN
caryologia-232	174	18	.	.	PROPN
caryologia-232	174	19	2015	2015	NUM
caryologia-232	174	20	;	;	PUNCT
caryologia-232	174	21	giordani	giordani	PROPN
caryologia-232	174	22	et	et	PROPN
caryologia-232	174	23	al	al	PROPN
caryologia-232	174	24	.	.	PROPN
caryologia-232	174	25	2016	2016	NUM
caryologia-232	174	26	)	)	PUNCT
caryologia-232	174	27	.	.	PUNCT
caryologia-232	175	1	however	however	ADV
caryologia-232	175	2	,	,	PUNCT
caryologia-232	175	3	the	the	DET
caryologia-232	175	4	majority	majority	NOUN
caryologia-232	175	5	of	of	ADP
caryologia-232	175	6	ltr	ltr	ADJ
caryologia-232	175	7	-	-	PUNCT
caryologia-232	175	8	res	re	NOUN
caryologia-232	175	9	are	be	AUX
caryologia-232	175	10	barely	barely	ADV
caryologia-232	175	11	expressed	express	VERB
caryologia-232	175	12	(	(	PUNCT
caryologia-232	175	13	vicient	vicient	NOUN
caryologia-232	175	14	et	et	PROPN
caryologia-232	175	15	al	al	PROPN
caryologia-232	175	16	.	.	PROPN
caryologia-232	175	17	2001	2001	NUM
caryologia-232	175	18	;	;	PUNCT
caryologia-232	175	19	ishiguro	ishiguro	PROPN
caryologia-232	175	20	et	et	PROPN
caryologia-232	175	21	al	al	PROPN
caryologia-232	175	22	.	.	PROPN
caryologia-232	175	23	2014	2014	NUM
caryologia-232	175	24	;	;	PUNCT
caryologia-232	175	25	vangelisti	vangelisti	PROPN
caryologia-232	175	26	et	et	PROPN
caryologia-232	175	27	al	al	PROPN
caryologia-232	175	28	.	.	PROPN
caryologia-232	175	29	2019	2019	NUM
caryologia-232	175	30	)	)	PUNCT
caryologia-232	175	31	.	.	PUNCT
caryologia-232	176	1	in	in	ADP
caryologia-232	176	2	some	some	DET
caryologia-232	176	3	cases	case	NOUN
caryologia-232	176	4	,	,	PUNCT
caryologia-232	176	5	specific	specific	ADJ
caryologia-232	176	6	ltr	ltr	NOUN
caryologia-232	176	7	-	-	PUNCT
caryologia-232	176	8	re	re	NOUN
caryologia-232	176	9	sublineages	sublineage	NOUN
caryologia-232	176	10	have	have	AUX
caryologia-232	176	11	been	be	AUX
caryologia-232	176	12	shown	show	VERB
caryologia-232	176	13	to	to	PART
caryologia-232	176	14	be	be	AUX
caryologia-232	176	15	activated	activate	VERB
caryologia-232	176	16	and	and	CCONJ
caryologia-232	176	17	possibly	possibly	ADV
caryologia-232	176	18	overexpressed	overexpresse	VERB
caryologia-232	176	19	by	by	ADP
caryologia-232	176	20	different	different	ADJ
caryologia-232	176	21	culture	culture	NOUN
caryologia-232	176	22	conditions	condition	NOUN
caryologia-232	176	23	,	,	PUNCT
caryologia-232	176	24	as	as	ADP
caryologia-232	176	25	tissue	tissue	NOUN
caryologia-232	176	26	culture	culture	NOUN
caryologia-232	176	27	(	(	PUNCT
caryologia-232	176	28	kashkush	kashkush	PROPN
caryologia-232	176	29	et	et	PROPN
caryologia-232	176	30	al	al	PROPN
caryologia-232	176	31	.	.	PROPN
caryologia-232	176	32	2003	2003	NUM
caryologia-232	176	33	;	;	PUNCT
caryologia-232	176	34	liu	liu	PROPN
caryologia-232	176	35	et	et	PROPN
caryologia-232	176	36	al	al	PROPN
caryologia-232	176	37	.	.	PROPN
caryologia-232	176	38	2004	2004	NUM
caryologia-232	176	39	)	)	PUNCT
caryologia-232	176	40	,	,	PUNCT
caryologia-232	176	41	wounding	wounding	NOUN
caryologia-232	176	42	,	,	PUNCT
caryologia-232	176	43	methyl	methyl	NOUN
caryologia-232	176	44	jasmonate	jasmonate	NOUN
caryologia-232	176	45	and	and	CCONJ
caryologia-232	176	46	fungal	fungal	ADJ
caryologia-232	176	47	elicitors	elicitor	NOUN
caryologia-232	176	48	(	(	PUNCT
caryologia-232	176	49	takeda	takeda	X
caryologia-232	176	50	et	et	PROPN
caryologia-232	176	51	al	al	PROPN
caryologia-232	176	52	.	.	PROPN
caryologia-232	176	53	1999	1999	NUM
caryologia-232	176	54	)	)	PUNCT
caryologia-232	176	55	,	,	PUNCT
caryologia-232	176	56	various	various	ADJ
caryologia-232	176	57	phytohormones	phytohormone	NOUN
caryologia-232	176	58	and	and	CCONJ
caryologia-232	176	59	cold	cold	ADJ
caryologia-232	176	60	stress	stress	NOUN
caryologia-232	176	61	(	(	PUNCT
caryologia-232	176	62	he	he	PRON
caryologia-232	176	63	et	et	PROPN
caryologia-232	176	64	al	al	PROPN
caryologia-232	176	65	.	.	PROPN
caryologia-232	176	66	2010	2010	NUM
caryologia-232	176	67	,	,	PUNCT
caryologia-232	176	68	2012	2012	NUM
caryologia-232	176	69	)	)	PUNCT
caryologia-232	176	70	,	,	PUNCT
caryologia-232	176	71	heat	heat	NOUN
caryologia-232	176	72	stress	stress	NOUN
caryologia-232	176	73	(	(	PUNCT
caryologia-232	176	74	ito	ito	PROPN
caryologia-232	176	75	et	et	PROPN
caryologia-232	176	76	al	al	PROPN
caryologia-232	176	77	.	.	PROPN
caryologia-232	176	78	2013	2013	NUM
caryologia-232	176	79	)	)	PUNCT
caryologia-232	176	80	.	.	PUNCT
caryologia-232	177	1	hormones	hormone	NOUN
caryologia-232	177	2	,	,	PUNCT
caryologia-232	177	3	and	and	CCONJ
caryologia-232	177	4	biotic	biotic	ADJ
caryologia-232	177	5	/	/	SYM
caryologia-232	177	6	abiotic	abiotic	ADJ
caryologia-232	177	7	stresses	stress	NOUN
caryologia-232	177	8	induced	induce	VERB
caryologia-232	177	9	a	a	DET
caryologia-232	177	10	general	general	ADJ
caryologia-232	177	11	ltr	ltr	NOUN
caryologia-232	177	12	-	-	PUNCT
caryologia-232	177	13	re	re	NOUN
caryologia-232	177	14	activation	activation	NOUN
caryologia-232	177	15	in	in	ADP
caryologia-232	177	16	pine	pine	NOUN
caryologia-232	177	17	(	(	PUNCT
caryologia-232	177	18	voronova	voronova	X
caryologia-232	177	19	et	et	PROPN
caryologia-232	177	20	al	al	PROPN
caryologia-232	177	21	.	.	PROPN
caryologia-232	177	22	2014	2014	NUM
caryologia-232	177	23	;	;	PUNCT
caryologia-232	177	24	fan	fan	PROPN
caryologia-232	177	25	et	et	PROPN
caryologia-232	177	26	al	al	PROPN
caryologia-232	177	27	.	.	PROPN
caryologia-232	177	28	2014	2014	NUM
caryologia-232	177	29	)	)	PUNCT
caryologia-232	177	30	and	and	CCONJ
caryologia-232	177	31	in	in	ADP
caryologia-232	177	32	sunflower	sunflower	NOUN
caryologia-232	177	33	(	(	PUNCT
caryologia-232	177	34	vangelisti	vangelisti	PROPN
caryologia-232	177	35	et	et	PROPN
caryologia-232	177	36	al	al	PROPN
caryologia-232	177	37	.	.	PROPN
caryologia-232	177	38	2019	2019	NUM
caryologia-232	177	39	)	)	PUNCT
caryologia-232	177	40	.	.	PUNCT
caryologia-232	178	1	in	in	ADP
caryologia-232	178	2	the	the	DET
caryologia-232	178	3	present	present	ADJ
caryologia-232	178	4	study	study	NOUN
caryologia-232	178	5	,	,	PUNCT
caryologia-232	178	6	as	as	ADP
caryologia-232	178	7	in	in	ADP
caryologia-232	178	8	all	all	DET
caryologia-232	178	9	previous	previous	ADJ
caryologia-232	178	10	works	work	NOUN
caryologia-232	178	11	,	,	PUNCT
caryologia-232	178	12	the	the	DET
caryologia-232	178	13	same	same	ADJ
caryologia-232	178	14	treatment	treatment	NOUN
caryologia-232	178	15	up	up	ADV
caryologia-232	178	16	-	-	PUNCT
caryologia-232	178	17	regulated	regulate	VERB
caryologia-232	178	18	certain	certain	ADJ
caryologia-232	178	19	ltr	ltr	ADJ
caryologia-232	178	20	-	-	PUNCT
caryologia-232	178	21	res	re	NOUN
caryologia-232	178	22	and	and	CCONJ
caryologia-232	178	23	repressed	repressed	ADJ
caryologia-232	178	24	or	or	CCONJ
caryologia-232	178	25	unaffected	unaffected	ADJ
caryologia-232	178	26	other	other	ADJ
caryologia-232	178	27	elements	element	NOUN
caryologia-232	178	28	.	.	PUNCT
caryologia-232	179	1	in	in	ADP
caryologia-232	179	2	p.	p.	PROPN
caryologia-232	179	3	trichocarpa	trichocarpa	NOUN
caryologia-232	179	4	,	,	PUNCT
caryologia-232	179	5	the	the	DET
caryologia-232	179	6	overall	overall	ADJ
caryologia-232	179	7	re	re	NOUN
caryologia-232	179	8	expression	expression	NOUN
caryologia-232	179	9	level	level	NOUN
caryologia-232	179	10	was	be	AUX
caryologia-232	179	11	higher	high	ADJ
caryologia-232	179	12	in	in	ADP
caryologia-232	179	13	leaves	leave	NOUN
caryologia-232	179	14	of	of	ADP
caryologia-232	179	15	control	control	NOUN
caryologia-232	179	16	plants	plant	NOUN
caryologia-232	179	17	than	than	ADP
caryologia-232	179	18	in	in	ADP
caryologia-232	179	19	those	those	PRON
caryologia-232	179	20	of	of	ADP
caryologia-232	179	21	plants	plant	NOUN
caryologia-232	179	22	exposed	expose	VERB
caryologia-232	179	23	to	to	ADP
caryologia-232	179	24	different	different	ADJ
caryologia-232	179	25	stresses	stress	NOUN
caryologia-232	179	26	,	,	PUNCT
caryologia-232	179	27	suggesting	suggest	VERB
caryologia-232	179	28	that	that	SCONJ
caryologia-232	179	29	plants	plant	NOUN
caryologia-232	179	30	responded	respond	VERB
caryologia-232	179	31	to	to	ADP
caryologia-232	179	32	stresses	stress	NOUN
caryologia-232	179	33	increasing	increase	VERB
caryologia-232	179	34	defence	defence	NOUN
caryologia-232	179	35	mechanisms	mechanism	NOUN
caryologia-232	179	36	related	relate	VERB
caryologia-232	179	37	to	to	ADP
caryologia-232	179	38	res	re	NOUN
caryologia-232	179	39	.	.	PUNCT
caryologia-232	180	1	this	this	PRON
caryologia-232	180	2	is	be	AUX
caryologia-232	180	3	different	different	ADJ
caryologia-232	180	4	from	from	ADP
caryologia-232	180	5	what	what	PRON
caryologia-232	180	6	found	find	VERB
caryologia-232	180	7	by	by	ADP
caryologia-232	180	8	vangelisti	vangelisti	NOUN
caryologia-232	180	9	et	et	PROPN
caryologia-232	180	10	al	al	PROPN
caryologia-232	180	11	(	(	PUNCT
caryologia-232	180	12	2019	2019	NUM
caryologia-232	180	13	)	)	PUNCT
caryologia-232	180	14	in	in	ADP
caryologia-232	180	15	roots	root	NOUN
caryologia-232	180	16	of	of	ADP
caryologia-232	180	17	sunflower	sunflower	NOUN
caryologia-232	180	18	:	:	PUNCT
caryologia-232	180	19	in	in	ADP
caryologia-232	180	20	this	this	DET
caryologia-232	180	21	species	specie	NOUN
caryologia-232	180	22	,	,	PUNCT
caryologia-232	180	23	the	the	DET
caryologia-232	180	24	expression	expression	NOUN
caryologia-232	180	25	level	level	NOUN
caryologia-232	180	26	of	of	ADP
caryologia-232	180	27	ltr	ltr	NOUN
caryologia-232	180	28	-	-	PUNCT
caryologia-232	180	29	res	re	NOUN
caryologia-232	180	30	remained	remain	VERB
caryologia-232	180	31	substantially	substantially	ADV
caryologia-232	180	32	very	very	ADV
caryologia-232	180	33	low	low	ADJ
caryologia-232	180	34	but	but	CCONJ
caryologia-232	180	35	it	it	PRON
caryologia-232	180	36	slightly	slightly	ADV
caryologia-232	180	37	increased	increase	VERB
caryologia-232	180	38	after	after	ADP
caryologia-232	180	39	different	different	ADJ
caryologia-232	180	40	stresses	stress	NOUN
caryologia-232	180	41	.	.	PUNCT
caryologia-232	181	1	although	although	SCONJ
caryologia-232	181	2	the	the	DET
caryologia-232	181	3	generally	generally	ADV
caryologia-232	181	4	low	low	ADJ
caryologia-232	181	5	level	level	NOUN
caryologia-232	181	6	of	of	ADP
caryologia-232	181	7	ltr	ltr	ADJ
caryologia-232	181	8	-	-	PUNCT
caryologia-232	181	9	res	re	NOUN
caryologia-232	181	10	expression	expression	NOUN
caryologia-232	181	11	,	,	PUNCT
caryologia-232	181	12	more	more	ADJ
caryologia-232	181	13	than	than	ADP
caryologia-232	181	14	40	40	NUM
caryologia-232	181	15	elements	element	NOUN
caryologia-232	181	16	showed	show	VERB
caryologia-232	181	17	a	a	DET
caryologia-232	181	18	significant	significant	ADJ
caryologia-232	181	19	activity	activity	NOUN
caryologia-232	181	20	(	(	PUNCT
caryologia-232	181	21	more	more	ADJ
caryologia-232	181	22	than	than	ADP
caryologia-232	181	23	10	10	NUM
caryologia-232	181	24	mapped	map	VERB
caryologia-232	181	25	reads	read	NOUN
caryologia-232	181	26	x	x	SYM
caryologia-232	181	27	million	million	NUM
caryologia-232	181	28	)	)	PUNCT
caryologia-232	181	29	,	,	PUNCT
caryologia-232	181	30	either	either	CCONJ
caryologia-232	181	31	in	in	ADP
caryologia-232	181	32	controls	control	NOUN
caryologia-232	181	33	and	and	CCONJ
caryologia-232	181	34	stressed	stress	VERB
caryologia-232	181	35	plants	plant	NOUN
caryologia-232	181	36	,	,	PUNCT
caryologia-232	181	37	suggesting	suggest	VERB
caryologia-232	181	38	that	that	SCONJ
caryologia-232	181	39	they	they	PRON
caryologia-232	181	40	are	be	AUX
caryologia-232	181	41	not	not	PART
caryologia-232	181	42	silenced	silence	VERB
caryologia-232	181	43	and	and	CCONJ
caryologia-232	181	44	hence	hence	ADV
caryologia-232	181	45	may	may	AUX
caryologia-232	181	46	still	still	ADV
caryologia-232	181	47	have	have	VERB
caryologia-232	181	48	mutagenic	mutagenic	ADJ
caryologia-232	181	49	potential	potential	NOUN
caryologia-232	181	50	,	,	PUNCT
caryologia-232	181	51	if	if	SCONJ
caryologia-232	181	52	retrotranscription	retrotranscription	NOUN
caryologia-232	181	53	and	and	CCONJ
caryologia-232	181	54	insertion	insertion	NOUN
caryologia-232	181	55	in	in	ADP
caryologia-232	181	56	new	new	ADJ
caryologia-232	181	57	sites	site	NOUN
caryologia-232	181	58	would	would	AUX
caryologia-232	181	59	occur	occur	VERB
caryologia-232	181	60	after	after	ADP
caryologia-232	181	61	expression	expression	NOUN
caryologia-232	181	62	.	.	PUNCT
caryologia-232	182	1	the	the	DET
caryologia-232	182	2	comparison	comparison	NOUN
caryologia-232	182	3	,	,	PUNCT
caryologia-232	182	4	for	for	ADP
caryologia-232	182	5	each	each	DET
caryologia-232	182	6	ltr	ltr	NOUN
caryologia-232	182	7	-	-	PUNCT
caryologia-232	182	8	re	re	NOUN
caryologia-232	182	9	,	,	PUNCT
caryologia-232	182	10	of	of	ADP
caryologia-232	182	11	the	the	DET
caryologia-232	182	12	abundance	abundance	NOUN
caryologia-232	182	13	in	in	ADP
caryologia-232	182	14	the	the	DET
caryologia-232	182	15	genome	genome	NOUN
caryologia-232	182	16	and	and	CCONJ
caryologia-232	182	17	its	its	PRON
caryologia-232	182	18	expression	expression	NOUN
caryologia-232	182	19	in	in	ADP
caryologia-232	182	20	leaves	leave	NOUN
caryologia-232	182	21	of	of	ADP
caryologia-232	182	22	control	control	NOUN
caryologia-232	182	23	or	or	CCONJ
caryologia-232	182	24	stressed	stress	VERB
caryologia-232	182	25	plants	plant	NOUN
caryologia-232	182	26	,	,	PUNCT
caryologia-232	182	27	showed	show	VERB
caryologia-232	182	28	that	that	SCONJ
caryologia-232	182	29	most	most	ADV
caryologia-232	182	30	expressed	express	VERB
caryologia-232	182	31	elements	element	NOUN
caryologia-232	182	32	are	be	AUX
caryologia-232	182	33	generally	generally	ADV
caryologia-232	182	34	lowly	lowly	ADJ
caryologia-232	182	35	abundant	abundant	ADJ
caryologia-232	182	36	.	.	PUNCT
caryologia-232	183	1	such	such	ADJ
caryologia-232	183	2	lack	lack	NOUN
caryologia-232	183	3	of	of	ADP
caryologia-232	183	4	correlation	correlation	NOUN
caryologia-232	183	5	between	between	ADP
caryologia-232	183	6	ltr	ltr	NOUN
caryologia-232	183	7	-	-	PUNCT
caryologia-232	183	8	re	re	NOUN
caryologia-232	183	9	abundance	abundance	NOUN
caryologia-232	183	10	and	and	CCONJ
caryologia-232	183	11	transcription	transcription	NOUN
caryologia-232	183	12	is	be	AUX
caryologia-232	183	13	not	not	PART
caryologia-232	183	14	surprising	surprising	ADJ
caryologia-232	183	15	:	:	PUNCT
caryologia-232	183	16	other	other	ADJ
caryologia-232	183	17	studies	study	NOUN
caryologia-232	183	18	showed	show	VERB
caryologia-232	183	19	that	that	SCONJ
caryologia-232	183	20	the	the	PRON
caryologia-232	183	21	more	more	ADV
caryologia-232	183	22	an	an	DET
caryologia-232	183	23	element	element	NOUN
caryologia-232	183	24	is	be	AUX
caryologia-232	183	25	repeated	repeat	VERB
caryologia-232	183	26	the	the	DET
caryologia-232	183	27	more	more	ADJ
caryologia-232	183	28	it	it	PRON
caryologia-232	183	29	is	be	AUX
caryologia-232	183	30	recognized	recognize	VERB
caryologia-232	183	31	by	by	ADP
caryologia-232	183	32	the	the	DET
caryologia-232	183	33	rna	rna	NOUN
caryologia-232	183	34	silencing	silence	VERB
caryologia-232	183	35	machinery	machinery	NOUN
caryologia-232	183	36	(	(	PUNCT
caryologia-232	183	37	meyers	meyer	NOUN
caryologia-232	183	38	et	et	PROPN
caryologia-232	183	39	al	al	PROPN
caryologia-232	183	40	.	.	PROPN
caryologia-232	183	41	2001	2001	NUM
caryologia-232	183	42	;	;	PUNCT
caryologia-232	183	43	yamazaki	yamazaki	PROPN
caryologia-232	183	44	et	et	PROPN
caryologia-232	183	45	al	al	PROPN
caryologia-232	183	46	.	.	PROPN
caryologia-232	183	47	2001	2001	NUM
caryologia-232	183	48	;	;	PUNCT
caryologia-232	183	49	lisch	lisch	PROPN
caryologia-232	183	50	2009	2009	NUM
caryologia-232	183	51	)	)	PUNCT
caryologia-232	183	52	.	.	PUNCT
caryologia-232	184	1	low	low	ADJ
caryologia-232	184	2	levels	level	NOUN
caryologia-232	184	3	of	of	ADP
caryologia-232	184	4	transcription	transcription	NOUN
caryologia-232	184	5	of	of	ADP
caryologia-232	184	6	repeated	repeat	VERB
caryologia-232	184	7	sequences	sequence	NOUN
caryologia-232	184	8	are	be	AUX
caryologia-232	184	9	often	often	ADV
caryologia-232	184	10	attributed	attribute	VERB
caryologia-232	184	11	to	to	ADP
caryologia-232	184	12	dna	dna	PROPN
caryologia-232	184	13	contamination	contamination	NOUN
caryologia-232	184	14	of	of	ADP
caryologia-232	184	15	rna	rna	NOUN
caryologia-232	184	16	samples	sample	NOUN
caryologia-232	184	17	.	.	PUNCT
caryologia-232	185	1	the	the	DET
caryologia-232	185	2	low	low	ADJ
caryologia-232	185	3	expression	expression	NOUN
caryologia-232	185	4	level	level	NOUN
caryologia-232	185	5	of	of	ADP
caryologia-232	185	6	most	most	ADJ
caryologia-232	185	7	abundant	abundant	ADJ
caryologia-232	185	8	ltr	ltr	ADJ
caryologia-232	185	9	-	-	PUNCT
caryologia-232	185	10	res	re	NOUN
caryologia-232	185	11	suggested	suggest	VERB
caryologia-232	185	12	also	also	ADV
caryologia-232	185	13	that	that	SCONJ
caryologia-232	185	14	the	the	DET
caryologia-232	185	15	occurrence	occurrence	NOUN
caryologia-232	185	16	of	of	ADP
caryologia-232	185	17	retrotransposon	retrotransposon	NOUN
caryologia-232	185	18	-	-	PUNCT
caryologia-232	185	19	related	relate	VERB
caryologia-232	185	20	reads	read	NOUN
caryologia-232	185	21	in	in	ADP
caryologia-232	185	22	the	the	DET
caryologia-232	185	23	cdna	cdna	PROPN
caryologia-232	185	24	libraries	library	NOUN
caryologia-232	185	25	was	be	AUX
caryologia-232	185	26	not	not	PART
caryologia-232	185	27	due	due	ADJ
caryologia-232	185	28	to	to	ADP
caryologia-232	185	29	dna	dna	PROPN
caryologia-232	185	30	contamination	contamination	NOUN
caryologia-232	185	31	.	.	PUNCT
caryologia-232	186	1	genome	genome	NOUN
caryologia-232	186	2	localization	localization	NOUN
caryologia-232	186	3	of	of	ADP
caryologia-232	186	4	highly	highly	ADV
caryologia-232	186	5	expressed	express	VERB
caryologia-232	186	6	(	(	PUNCT
caryologia-232	186	7	mrpm	mrpm	ADJ
caryologia-232	186	8	>	>	X
caryologia-232	186	9	10	10	NUM
caryologia-232	186	10	)	)	PUNCT
caryologia-232	186	11	ltr	ltr	ADJ
caryologia-232	186	12	-	-	PUNCT
caryologia-232	186	13	res	re	NOUN
caryologia-232	186	14	indicated	indicate	VERB
caryologia-232	186	15	that	that	SCONJ
caryologia-232	186	16	,	,	PUNCT
caryologia-232	186	17	in	in	ADP
caryologia-232	186	18	poplar	poplar	NOUN
caryologia-232	186	19	,	,	PUNCT
caryologia-232	186	20	the	the	DET
caryologia-232	186	21	expression	expression	NOUN
caryologia-232	186	22	of	of	ADP
caryologia-232	186	23	an	an	DET
caryologia-232	186	24	element	element	NOUN
caryologia-232	186	25	is	be	AUX
caryologia-232	186	26	only	only	ADV
caryologia-232	186	27	slightly	slightly	ADV
caryologia-232	186	28	related	relate	VERB
caryologia-232	186	29	to	to	ADP
caryologia-232	186	30	its	its	PRON
caryologia-232	186	31	chromosomal	chromosomal	ADJ
caryologia-232	186	32	localization	localization	NOUN
caryologia-232	186	33	,	,	PUNCT
caryologia-232	186	34	because	because	SCONJ
caryologia-232	186	35	the	the	DET
caryologia-232	186	36	profiles	profile	NOUN
caryologia-232	186	37	of	of	ADP
caryologia-232	186	38	expressed	express	VERB
caryologia-232	186	39	ltr	ltr	ADJ
caryologia-232	186	40	-	-	PUNCT
caryologia-232	186	41	res	re	NOUN
caryologia-232	186	42	parallels	parallel	VERB
caryologia-232	186	43	those	those	PRON
caryologia-232	186	44	of	of	ADP
caryologia-232	186	45	all	all	DET
caryologia-232	186	46	ltr	ltr	NOUN
caryologia-232	186	47	-	-	PUNCT
caryologia-232	186	48	res	re	NOUN
caryologia-232	186	49	.	.	PUNCT
caryologia-232	187	1	however	however	ADV
caryologia-232	187	2	,	,	PUNCT
caryologia-232	187	3	we	we	PRON
caryologia-232	187	4	observed	observe	VERB
caryologia-232	187	5	a	a	DET
caryologia-232	187	6	few	few	ADJ
caryologia-232	187	7	specific	specific	ADJ
caryologia-232	187	8	chromosome	chromosome	NOUN
caryologia-232	187	9	regions	region	NOUN
caryologia-232	187	10	showing	show	VERB
caryologia-232	187	11	differences	difference	NOUN
caryologia-232	187	12	between	between	ADP
caryologia-232	187	13	profiles	profile	NOUN
caryologia-232	187	14	of	of	ADP
caryologia-232	187	15	all	all	DET
caryologia-232	187	16	the	the	DET
caryologia-232	187	17	ltr	ltr	ADJ
caryologia-232	187	18	-	-	PUNCT
caryologia-232	187	19	res	re	NOUN
caryologia-232	187	20	and	and	CCONJ
caryologia-232	187	21	expressed	express	VERB
caryologia-232	187	22	ltrres	ltrre	NOUN
caryologia-232	187	23	,	,	PUNCT
caryologia-232	187	24	suggesting	suggest	VERB
caryologia-232	187	25	that	that	SCONJ
caryologia-232	187	26	some	some	DET
caryologia-232	187	27	regions	region	NOUN
caryologia-232	187	28	are	be	AUX
caryologia-232	187	29	specifically	specifically	ADV
caryologia-232	187	30	activated	activate	VERB
caryologia-232	187	31	or	or	CCONJ
caryologia-232	187	32	repressed	repress	VERB
caryologia-232	187	33	.	.	PUNCT
caryologia-232	188	1	in	in	ADP
caryologia-232	188	2	species	specie	NOUN
caryologia-232	188	3	with	with	ADP
caryologia-232	188	4	much	much	ADV
caryologia-232	188	5	larger	large	ADJ
caryologia-232	188	6	genomes	genome	NOUN
caryologia-232	188	7	than	than	ADP
caryologia-232	188	8	poplar	poplar	NOUN
caryologia-232	188	9	,	,	PUNCT
caryologia-232	188	10	as	as	SCONJ
caryologia-232	188	11	the	the	DET
caryologia-232	188	12	sunflower	sunflower	NOUN
caryologia-232	188	13	,	,	PUNCT
caryologia-232	188	14	ltr	ltr	NOUN
caryologia-232	188	15	-	-	PUNCT
caryologia-232	188	16	re	re	NOUN
caryologia-232	188	17	expression	expression	NOUN
caryologia-232	188	18	was	be	AUX
caryologia-232	188	19	observed	observe	VERB
caryologia-232	188	20	in	in	ADP
caryologia-232	188	21	specific	specific	ADJ
caryologia-232	188	22	genomic	genomic	ADJ
caryologia-232	188	23	regions	region	NOUN
caryologia-232	188	24	,	,	PUNCT
caryologia-232	188	25	relatively	relatively	ADV
caryologia-232	188	26	distant	distant	ADJ
caryologia-232	188	27	from	from	ADP
caryologia-232	188	28	putative	putative	ADJ
caryologia-232	188	29	centromeres	centromere	NOUN
caryologia-232	188	30	,	,	PUNCT
caryologia-232	188	31	and	and	CCONJ
caryologia-232	188	32	preferentially	preferentially	ADV
caryologia-232	188	33	located	locate	VERB
caryologia-232	188	34	at	at	ADP
caryologia-232	188	35	chromosome	chromosome	NOUN
caryologia-232	188	36	ends	end	NOUN
caryologia-232	188	37	(	(	PUNCT
caryologia-232	188	38	mascagni	mascagni	NOUN
caryologia-232	188	39	et	et	PROPN
caryologia-232	188	40	al	al	PROPN
caryologia-232	188	41	.	.	PROPN
caryologia-232	188	42	2019	2019	NUM
caryologia-232	188	43	)	)	PUNCT
caryologia-232	188	44	.	.	PUNCT
caryologia-232	189	1	concerning	concern	VERB
caryologia-232	189	2	the	the	DET
caryologia-232	189	3	relationship	relationship	NOUN
caryologia-232	189	4	between	between	ADP
caryologia-232	189	5	expression	expression	NOUN
caryologia-232	189	6	and	and	CCONJ
caryologia-232	189	7	superfamily	superfamily	ADJ
caryologia-232	189	8	/	/	SYM
caryologia-232	189	9	lineage	lineage	NOUN
caryologia-232	189	10	of	of	ADP
caryologia-232	189	11	the	the	DET
caryologia-232	189	12	elements	element	NOUN
caryologia-232	189	13	,	,	PUNCT
caryologia-232	189	14	our	our	PRON
caryologia-232	189	15	results	result	NOUN
caryologia-232	189	16	showed	show	VERB
caryologia-232	189	17	that	that	SCONJ
caryologia-232	189	18	expression	expression	NOUN
caryologia-232	189	19	of	of	ADP
caryologia-232	189	20	gypsy	gypsy	NOUN
caryologia-232	189	21	res	re	NOUN
caryologia-232	189	22	was	be	AUX
caryologia-232	189	23	higher	high	ADJ
caryologia-232	189	24	than	than	ADP
caryologia-232	189	25	expression	expression	NOUN
caryologia-232	189	26	of	of	ADP
caryologia-232	189	27	copia	copia	PROPN
caryologia-232	189	28	elements	element	NOUN
caryologia-232	189	29	.	.	PUNCT
caryologia-232	190	1	at	at	ADP
caryologia-232	190	2	lineage	lineage	NOUN
caryologia-232	190	3	level	level	NOUN
caryologia-232	190	4	,	,	PUNCT
caryologia-232	190	5	ogre	ogre	NOUN
caryologia-232	190	6	ltr	ltr	NOUN
caryologia-232	190	7	-	-	PUNCT
caryologia-232	190	8	res	re	NOUN
caryologia-232	190	9	were	be	AUX
caryologia-232	190	10	by	by	ADP
caryologia-232	190	11	far	far	ADV
caryologia-232	190	12	the	the	DET
caryologia-232	190	13	most	most	ADV
caryologia-232	190	14	transcribed	transcribe	VERB
caryologia-232	190	15	elements	element	NOUN
caryologia-232	190	16	.	.	PUNCT
caryologia-232	191	1	among	among	ADP
caryologia-232	191	2	copia	copia	PROPN
caryologia-232	191	3	lineages	lineage	NOUN
caryologia-232	191	4	,	,	PUNCT
caryologia-232	191	5	the	the	DET
caryologia-232	191	6	most	most	ADV
caryologia-232	191	7	expressed	express	VERB
caryologia-232	191	8	were	be	AUX
caryologia-232	191	9	sire	sire	NOUN
caryologia-232	191	10	and	and	CCONJ
caryologia-232	191	11	tar	tar	NOUN
caryologia-232	191	12	/	/	SYM
caryologia-232	191	13	tork	tork	NOUN
caryologia-232	191	14	,	,	PUNCT
caryologia-232	191	15	indicating	indicate	VERB
caryologia-232	191	16	that	that	SCONJ
caryologia-232	191	17	,	,	PUNCT
caryologia-232	191	18	besides	besides	SCONJ
caryologia-232	191	19	chromosomal	chromosomal	ADJ
caryologia-232	191	20	localization	localization	NOUN
caryologia-232	191	21	and	and	CCONJ
caryologia-232	191	22	genome	genome	NOUN
caryologia-232	191	23	abundance	abundance	NOUN
caryologia-232	191	24	,	,	PUNCT
caryologia-232	191	25	also	also	ADV
caryologia-232	191	26	the	the	DET
caryologia-232	191	27	“	"	PUNCT
caryologia-232	191	28	genotype	genotype	NOUN
caryologia-232	191	29	”	"	PUNCT
caryologia-232	191	30	of	of	ADP
caryologia-232	191	31	the	the	DET
caryologia-232	191	32	ltr	ltr	NOUN
caryologia-232	191	33	-	-	PUNCT
caryologia-232	191	34	re	re	NOUN
caryologia-232	191	35	may	may	AUX
caryologia-232	191	36	play	play	VERB
caryologia-232	191	37	a	a	DET
caryologia-232	191	38	role	role	NOUN
caryologia-232	191	39	in	in	ADP
caryologia-232	191	40	its	its	PRON
caryologia-232	191	41	activation	activation	NOUN
caryologia-232	191	42	.	.	PUNCT
caryologia-232	192	1	our	our	PRON
caryologia-232	192	2	results	result	NOUN
caryologia-232	192	3	confirmed	confirm	VERB
caryologia-232	192	4	what	what	PRON
caryologia-232	192	5	previously	previously	ADV
caryologia-232	192	6	shown	show	VERB
caryologia-232	192	7	in	in	ADP
caryologia-232	192	8	other	other	ADJ
caryologia-232	192	9	studies	study	NOUN
caryologia-232	192	10	,	,	PUNCT
caryologia-232	192	11	since	since	SCONJ
caryologia-232	192	12	many	many	ADJ
caryologia-232	192	13	of	of	ADP
caryologia-232	192	14	the	the	DET
caryologia-232	192	15	ltr	ltr	NOUN
caryologia-232	192	16	-	-	PUNCT
caryologia-232	192	17	res	re	NOUN
caryologia-232	192	18	expressed	express	VERB
caryologia-232	192	19	in	in	ADP
caryologia-232	192	20	other	other	ADJ
caryologia-232	192	21	species	specie	NOUN
caryologia-232	192	22	are	be	AUX
caryologia-232	192	23	actually	actually	ADV
caryologia-232	192	24	of	of	ADP
caryologia-232	192	25	the	the	DET
caryologia-232	192	26	copia	copia	NOUN
caryologia-232	192	27	superfamily	superfamily	NOUN
caryologia-232	192	28	(	(	PUNCT
caryologia-232	192	29	ma	ma	PROPN
caryologia-232	192	30	et	et	PROPN
caryologia-232	192	31	al	al	PROPN
caryologia-232	192	32	.	.	PROPN
caryologia-232	192	33	2008	2008	NUM
caryologia-232	192	34	)	)	PUNCT
caryologia-232	192	35	.	.	PUNCT
caryologia-232	193	1	in	in	ADP
caryologia-232	193	2	the	the	DET
caryologia-232	193	3	case	case	NOUN
caryologia-232	193	4	of	of	ADP
caryologia-232	193	5	tobacco	tobacco	NOUN
caryologia-232	193	6	,	,	PUNCT
caryologia-232	193	7	both	both	DET
caryologia-232	193	8	tnt1	tnt1	NOUN
caryologia-232	193	9	and	and	CCONJ
caryologia-232	193	10	tto1	tto1	PROPN
caryologia-232	193	11	(	(	PUNCT
caryologia-232	193	12	which	which	PRON
caryologia-232	193	13	are	be	AUX
caryologia-232	193	14	induced	induce	VERB
caryologia-232	193	15	by	by	ADP
caryologia-232	193	16	tissue	tissue	NOUN
caryologia-232	193	17	culture	culture	NOUN
caryologia-232	193	18	)	)	PUNCT
caryologia-232	193	19	belong	belong	VERB
caryologia-232	193	20	to	to	ADP
caryologia-232	193	21	the	the	DET
caryologia-232	193	22	tar	tar	NOUN
caryologia-232	193	23	/	/	SYM
caryologia-232	193	24	tork	tork	NOUN
caryologia-232	193	25	lineage	lineage	NOUN
caryologia-232	193	26	(	(	PUNCT
caryologia-232	193	27	neumann	neumann	PROPN
caryologia-232	193	28	et	et	PROPN
caryologia-232	193	29	al	al	PROPN
caryologia-232	193	30	.	.	PROPN
caryologia-232	193	31	2019	2019	NUM
caryologia-232	193	32	)	)	PUNCT
caryologia-232	193	33	.	.	PUNCT
caryologia-232	194	1	gypsy	gypsy	PROPN
caryologia-232	194	2	ltr	ltr	PROPN
caryologia-232	194	3	-	-	PUNCT
caryologia-232	194	4	re	re	NOUN
caryologia-232	194	5	induction	induction	NOUN
caryologia-232	194	6	was	be	AUX
caryologia-232	194	7	reported	report	VERB
caryologia-232	194	8	in	in	ADP
caryologia-232	194	9	cotton	cotton	NOUN
caryologia-232	194	10	(	(	PUNCT
caryologia-232	194	11	hawkins	hawkin	NOUN
caryologia-232	194	12	et	et	NOUN
caryologia-232	194	13	al	al	PROPN
caryologia-232	194	14	.	.	PROPN
caryologia-232	194	15	2006	2006	NUM
caryologia-232	194	16	)	)	PUNCT
caryologia-232	194	17	,	,	PUNCT
caryologia-232	194	18	one	one	NUM
caryologia-232	194	19	of	of	ADP
caryologia-232	194	20	the	the	DET
caryologia-232	194	21	families	family	NOUN
caryologia-232	194	22	analyzed	analyze	VERB
caryologia-232	194	23	in	in	ADP
caryologia-232	194	24	that	that	DET
caryologia-232	194	25	study	study	NOUN
caryologia-232	194	26	belonged	belong	VERB
caryologia-232	194	27	to	to	ADP
caryologia-232	194	28	the	the	DET
caryologia-232	194	29	ogre	ogre	NOUN
caryologia-232	194	30	lineage	lineage	NOUN
caryologia-232	194	31	.	.	PUNCT
caryologia-232	195	1	it	it	PRON
caryologia-232	195	2	can	can	AUX
caryologia-232	195	3	be	be	AUX
caryologia-232	195	4	concluded	conclude	VERB
caryologia-232	195	5	that	that	SCONJ
caryologia-232	195	6	,	,	PUNCT
caryologia-232	195	7	probably	probably	ADV
caryologia-232	195	8	,	,	PUNCT
caryologia-232	195	9	different	different	ADJ
caryologia-232	195	10	ltr	ltr	ADJ
caryologia-232	195	11	-	-	PUNCT
caryologia-232	195	12	re	re	NOUN
caryologia-232	195	13	lineages	lineage	NOUN
caryologia-232	195	14	are	be	AUX
caryologia-232	195	15	specifically	specifically	ADV
caryologia-232	195	16	activated	activate	VERB
caryologia-232	195	17	in	in	ADP
caryologia-232	195	18	different	different	ADJ
caryologia-232	195	19	species	specie	NOUN
caryologia-232	195	20	.	.	PUNCT
caryologia-232	196	1	it	it	PRON
caryologia-232	196	2	can	can	AUX
caryologia-232	196	3	be	be	AUX
caryologia-232	196	4	assumed	assume	VERB
caryologia-232	196	5	that	that	SCONJ
caryologia-232	196	6	young	young	ADJ
caryologia-232	196	7	ltr	ltr	NOUN
caryologia-232	196	8	-	-	PUNCT
caryologia-232	196	9	res	re	NOUN
caryologia-232	196	10	are	be	AUX
caryologia-232	196	11	more	more	ADV
caryologia-232	196	12	prone	prone	ADJ
caryologia-232	196	13	to	to	PART
caryologia-232	196	14	be	be	AUX
caryologia-232	196	15	expressed	express	VERB
caryologia-232	196	16	than	than	ADP
caryologia-232	196	17	older	old	ADJ
caryologia-232	196	18	elements	element	NOUN
caryologia-232	196	19	,	,	PUNCT
caryologia-232	196	20	probably	probably	ADV
caryologia-232	196	21	because	because	SCONJ
caryologia-232	196	22	the	the	DET
caryologia-232	196	23	host	host	NOUN
caryologia-232	196	24	needs	need	VERB
caryologia-232	196	25	time	time	NOUN
caryologia-232	196	26	to	to	PART
caryologia-232	196	27	develop	develop	VERB
caryologia-232	196	28	defence	defence	NOUN
caryologia-232	196	29	mechanisms	mechanism	NOUN
caryologia-232	196	30	against	against	ADP
caryologia-232	196	31	new	new	ADJ
caryologia-232	196	32	elements	element	NOUN
caryologia-232	196	33	.	.	PUNCT
caryologia-232	197	1	ogre	ogre	NOUN
caryologia-232	197	2	and	and	CCONJ
caryologia-232	197	3	tar	tar	NOUN
caryologia-232	197	4	/	/	SYM
caryologia-232	197	5	tork	tork	NOUN
caryologia-232	197	6	elements	element	NOUN
caryologia-232	197	7	are	be	AUX
caryologia-232	197	8	the	the	DET
caryologia-232	197	9	youngest	young	ADJ
caryologia-232	197	10	ltr	ltr	NOUN
caryologia-232	197	11	-	-	PUNCT
caryologia-232	197	12	res	re	NOUN
caryologia-232	197	13	in	in	ADP
caryologia-232	197	14	p.	p.	PROPN
caryologia-232	197	15	trichocarpa	trichocarpa	PROPN
caryologia-232	198	1	(	(	PUNCT
caryologia-232	198	2	mascagni	mascagni	NOUN
caryologia-232	198	3	et	et	PROPN
caryologia-232	198	4	al	al	PROPN
caryologia-232	198	5	.	.	PROPN
caryologia-232	198	6	2018b	2018b	NUM
caryologia-232	198	7	):	):	PUNCT
caryologia-232	198	8	this	this	PRON
caryologia-232	198	9	could	could	AUX
caryologia-232	198	10	explain	explain	VERB
caryologia-232	198	11	why	why	SCONJ
caryologia-232	198	12	these	these	DET
caryologia-232	198	13	two	two	NUM
caryologia-232	198	14	lineages	lineage	NOUN
caryologia-232	198	15	showed	show	VERB
caryologia-232	198	16	the	the	DET
caryologia-232	198	17	highest	high	ADJ
caryologia-232	198	18	percentages	percentage	NOUN
caryologia-232	198	19	of	of	ADP
caryologia-232	198	20	expressed	express	VERB
caryologia-232	198	21	elements	element	NOUN
caryologia-232	198	22	.	.	PUNCT
caryologia-232	199	1	although	although	SCONJ
caryologia-232	199	2	most	most	ADJ
caryologia-232	199	3	ltr	ltr	ADJ
caryologia-232	199	4	-	-	PUNCT
caryologia-232	199	5	res	re	NOUN
caryologia-232	199	6	were	be	AUX
caryologia-232	199	7	expressed	express	VERB
caryologia-232	199	8	at	at	ADP
caryologia-232	199	9	the	the	DET
caryologia-232	199	10	same	same	ADJ
caryologia-232	199	11	level	level	NOUN
caryologia-232	199	12	in	in	ADP
caryologia-232	199	13	plants	plant	NOUN
caryologia-232	199	14	subjected	subject	VERB
caryologia-232	199	15	to	to	ADP
caryologia-232	199	16	different	different	ADJ
caryologia-232	199	17	treatments	treatment	NOUN
caryologia-232	199	18	,	,	PUNCT
caryologia-232	199	19	two	two	NUM
caryologia-232	199	20	stresses	stress	NOUN
caryologia-232	199	21	(	(	PUNCT
caryologia-232	199	22	salt	salt	NOUN
caryologia-232	199	23	and	and	CCONJ
caryologia-232	199	24	drought	drought	NOUN
caryologia-232	199	25	)	)	PUNCT
caryologia-232	199	26	specifically	specifically	ADV
caryologia-232	199	27	induced	induce	VERB
caryologia-232	199	28	a	a	DET
caryologia-232	199	29	number	number	NOUN
caryologia-232	199	30	of	of	ADP
caryologia-232	199	31	ltr	ltr	NOUN
caryologia-232	199	32	-	-	PUNCT
caryologia-232	199	33	res	re	NOUN
caryologia-232	199	34	.	.	PUNCT
caryologia-232	200	1	no	no	DET
caryologia-232	200	2	elements	element	NOUN
caryologia-232	200	3	were	be	AUX
caryologia-232	200	4	always	always	ADV
caryologia-232	200	5	induced	induce	VERB
caryologia-232	200	6	or	or	CCONJ
caryologia-232	200	7	always	always	ADV
caryologia-232	200	8	repressed	repress	VERB
caryologia-232	200	9	by	by	ADP
caryologia-232	200	10	every	every	DET
caryologia-232	200	11	stress	stress	NOUN
caryologia-232	200	12	.	.	PUNCT
caryologia-232	201	1	in	in	ADP
caryologia-232	201	2	some	some	DET
caryologia-232	201	3	cases	case	NOUN
caryologia-232	201	4	,	,	PUNCT
caryologia-232	201	5	the	the	DET
caryologia-232	201	6	same	same	ADJ
caryologia-232	201	7	element	element	NOUN
caryologia-232	201	8	was	be	AUX
caryologia-232	201	9	up	up	ADV
caryologia-232	201	10	-	-	PUNCT
caryologia-232	201	11	regulated	regulate	VERB
caryologia-232	201	12	by	by	ADP
caryologia-232	201	13	one	one	NUM
caryologia-232	201	14	stress	stress	NOUN
caryologia-232	201	15	and	and	CCONJ
caryologia-232	201	16	repressed	repress	VERB
caryologia-232	201	17	by	by	ADP
caryologia-232	201	18	another	another	PRON
caryologia-232	201	19	,	,	PUNCT
caryologia-232	201	20	probably	probably	ADV
caryologia-232	201	21	because	because	SCONJ
caryologia-232	201	22	of	of	ADP
caryologia-232	201	23	the	the	DET
caryologia-232	201	24	occurrence	occurrence	NOUN
caryologia-232	201	25	,	,	PUNCT
caryologia-232	201	26	within	within	ADP
caryologia-232	201	27	the	the	DET
caryologia-232	201	28	ltrs	ltrs	PROPN
caryologia-232	201	29	,	,	PUNCT
caryologia-232	201	30	of	of	ADP
caryologia-232	201	31	cis	cis	NOUN
caryologia-232	201	32	-	-	ADJ
caryologia-232	201	33	regulatory	regulatory	ADJ
caryologia-232	201	34	motifs	motif	NOUN
caryologia-232	201	35	recognized	recognize	VERB
caryologia-232	201	36	in	in	ADP
caryologia-232	201	37	specific	specific	ADJ
caryologia-232	201	38	stresses	stress	NOUN
caryologia-232	201	39	,	,	PUNCT
caryologia-232	201	40	as	as	ADP
caryologia-232	201	41	those	those	PRON
caryologia-232	201	42	identified	identify	VERB
caryologia-232	201	43	in	in	ADP
caryologia-232	201	44	the	the	DET
caryologia-232	201	45	ltr	ltr	NOUN
caryologia-232	201	46	of	of	ADP
caryologia-232	201	47	the	the	DET
caryologia-232	201	48	hacre1	hacre1	PROPN
caryologia-232	201	49	element	element	NOUN
caryologia-232	201	50	of	of	ADP
caryologia-232	201	51	sunflower	sunflower	NOUN
caryologia-232	201	52	(	(	PUNCT
caryologia-232	201	53	buti	buti	PROPN
caryologia-232	201	54	et	et	PROPN
caryologia-232	201	55	al	al	PROPN
caryologia-232	201	56	.	.	PROPN
caryologia-232	201	57	2009	2009	NUM
caryologia-232	201	58	)	)	PUNCT
caryologia-232	201	59	.	.	PUNCT
caryologia-232	202	1	in	in	ADP
caryologia-232	202	2	conclusion	conclusion	NOUN
caryologia-232	202	3	,	,	PUNCT
caryologia-232	202	4	this	this	DET
caryologia-232	202	5	study	study	NOUN
caryologia-232	202	6	outlines	outline	VERB
caryologia-232	202	7	a	a	DET
caryologia-232	202	8	general	general	ADJ
caryologia-232	202	9	picture	picture	NOUN
caryologia-232	202	10	of	of	ADP
caryologia-232	202	11	ltr	ltr	NOUN
caryologia-232	202	12	-	-	PUNCT
caryologia-232	202	13	re	re	NOUN
caryologia-232	202	14	activity	activity	NOUN
caryologia-232	202	15	in	in	ADP
caryologia-232	202	16	leaves	leave	NOUN
caryologia-232	202	17	of	of	ADP
caryologia-232	202	18	poplar	poplar	ADJ
caryologia-232	202	19	plants	plant	NOUN
caryologia-232	202	20	treated	treat	VERB
caryologia-232	202	21	with	with	ADP
caryologia-232	202	22	different	different	ADJ
caryologia-232	202	23	stresses	stress	NOUN
caryologia-232	202	24	.	.	PUNCT
caryologia-232	203	1	results	result	NOUN
caryologia-232	203	2	allowed	allow	VERB
caryologia-232	203	3	us	we	PRON
caryologia-232	203	4	to	to	PART
caryologia-232	203	5	have	have	VERB
caryologia-232	203	6	a	a	DET
caryologia-232	203	7	global	global	ADJ
caryologia-232	203	8	insight	insight	NOUN
caryologia-232	203	9	on	on	ADP
caryologia-232	203	10	the	the	DET
caryologia-232	203	11	features	feature	NOUN
caryologia-232	203	12	that	that	PRON
caryologia-232	203	13	affect	affect	VERB
caryologia-232	203	14	ltr	ltr	ADJ
caryologia-232	203	15	-	-	PUNCT
caryologia-232	203	16	re	re	NOUN
caryologia-232	203	17	expression	expression	NOUN
caryologia-232	203	18	.	.	PUNCT
caryologia-232	204	1	since	since	SCONJ
caryologia-232	204	2	ltr	ltr	NOUN
caryologia-232	204	3	-	-	PUNCT
caryologia-232	204	4	re	re	NOUN
caryologia-232	204	5	expression	expression	NOUN
caryologia-232	204	6	is	be	AUX
caryologia-232	204	7	just	just	ADV
caryologia-232	204	8	the	the	DET
caryologia-232	204	9	first	first	ADJ
caryologia-232	204	10	stage	stage	NOUN
caryologia-232	204	11	of	of	ADP
caryologia-232	204	12	retrotransposition	retrotransposition	NOUN
caryologia-232	204	13	,	,	PUNCT
caryologia-232	204	14	further	further	ADJ
caryologia-232	204	15	studies	study	NOUN
caryologia-232	204	16	are	be	AUX
caryologia-232	204	17	necessary	necessary	ADJ
caryologia-232	204	18	to	to	PART
caryologia-232	204	19	estimate	estimate	VERB
caryologia-232	204	20	subsequent	subsequent	ADJ
caryologia-232	204	21	stages	stage	NOUN
caryologia-232	204	22	of	of	ADP
caryologia-232	204	23	retrotransposition	retrotransposition	NOUN
caryologia-232	204	24	,	,	PUNCT
caryologia-232	204	25	including	include	VERB
caryologia-232	204	26	the	the	DET
caryologia-232	204	27	77genome	77genome	NUM
caryologia-232	204	28	analysis	analysis	NOUN
caryologia-232	204	29	of	of	ADP
caryologia-232	204	30	long	long	ADJ
caryologia-232	204	31	-	-	PUNCT
caryologia-232	204	32	terminal	terminal	ADJ
caryologia-232	204	33	-	-	PUNCT
caryologia-232	204	34	repeat	repeat	NOUN
caryologia-232	204	35	retrotransposon	retrotransposon	NOUN
caryologia-232	204	36	transcription	transcription	NOUN
caryologia-232	204	37	in	in	ADP
caryologia-232	204	38	leaves	leave	NOUN
caryologia-232	204	39	of	of	ADP
caryologia-232	204	40	populus	populus	ADJ
caryologia-232	204	41	trichocarpa	trichocarpa	NOUN
caryologia-232	204	42	insertion	insertion	NOUN
caryologia-232	204	43	of	of	ADP
caryologia-232	204	44	new	new	ADJ
caryologia-232	204	45	elements	element	NOUN
caryologia-232	204	46	in	in	ADP
caryologia-232	204	47	the	the	DET
caryologia-232	204	48	genome	genome	NOUN
caryologia-232	204	49	,	,	PUNCT
caryologia-232	204	50	in	in	ADP
caryologia-232	204	51	order	order	NOUN
caryologia-232	204	52	to	to	PART
caryologia-232	204	53	clarify	clarify	VERB
caryologia-232	204	54	the	the	DET
caryologia-232	204	55	biological	biological	ADJ
caryologia-232	204	56	significance	significance	NOUN
caryologia-232	204	57	of	of	ADP
caryologia-232	204	58	retrotransposon	retrotransposon	NOUN
caryologia-232	204	59	activity	activity	NOUN
caryologia-232	204	60	.	.	PUNCT
caryologia-232	205	1	funding	funding	NOUN
caryologia-232	205	2	research	research	NOUN
caryologia-232	205	3	work	work	NOUN
caryologia-232	205	4	funded	fund	VERB
caryologia-232	205	5	by	by	ADP
caryologia-232	205	6	department	department	NOUN
caryologia-232	205	7	of	of	ADP
caryologia-232	205	8	agriculture	agriculture	PROPN
caryologia-232	205	9	,	,	PUNCT
caryologia-232	205	10	food	food	NOUN
caryologia-232	205	11	,	,	PUNCT
caryologia-232	205	12	and	and	CCONJ
caryologia-232	205	13	environment	environment	NOUN
caryologia-232	205	14	,	,	PUNCT
caryologia-232	205	15	university	university	PROPN
caryologia-232	205	16	of	of	ADP
caryologia-232	205	17	pisa	pisa	PROPN
caryologia-232	205	18	,	,	PUNCT
caryologia-232	205	19	italy	italy	PROPN
caryologia-232	205	20	,	,	PUNCT
caryologia-232	205	21	project	project	NOUN
caryologia-232	205	22	plantomics	plantomic	NOUN
caryologia-232	205	23	.	.	PUNCT
caryologia-232	206	1	data	datum	NOUN
caryologia-232	206	2	availability	availability	NOUN
caryologia-232	206	3	statement	statement	NOUN
caryologia-232	206	4	the	the	DET
caryologia-232	206	5	set	set	NOUN
caryologia-232	206	6	of	of	ADP
caryologia-232	206	7	828	828	NUM
caryologia-232	206	8	full	full	ADJ
caryologia-232	206	9	length	length	NOUN
caryologia-232	206	10	ltr	ltr	NOUN
caryologia-232	206	11	-	-	PUNCT
caryologia-232	206	12	res	re	NOUN
caryologia-232	206	13	of	of	ADP
caryologia-232	206	14	p.	p.	PROPN
caryologia-232	206	15	trichocarpa	trichocarpa	NOUN
caryologia-232	206	16	is	be	AUX
caryologia-232	206	17	available	available	ADJ
caryologia-232	206	18	at	at	ADP
caryologia-232	206	19	the	the	DET
caryologia-232	206	20	sequence	sequence	NOUN
caryologia-232	206	21	repository	repository	NOUN
caryologia-232	206	22	of	of	ADP
caryologia-232	206	23	the	the	DET
caryologia-232	206	24	department	department	PROPN
caryologia-232	206	25	of	of	ADP
caryologia-232	206	26	agriculture	agriculture	PROPN
caryologia-232	206	27	,	,	PUNCT
caryologia-232	206	28	food	food	NOUN
caryologia-232	206	29	and	and	CCONJ
caryologia-232	206	30	environment	environment	NOUN
caryologia-232	206	31	,	,	PUNCT
caryologia-232	206	32	university	university	NOUN
caryologia-232	206	33	of	of	ADP
caryologia-232	206	34	pisa	pisa	PROPN
caryologia-232	206	35	(	(	PUNCT
caryologia-232	206	36	http://pgagl.agr.unipi.it/sequence-repository/	http://pgagl.agr.unipi.it/sequence-repository/	NOUN
caryologia-232	206	37	)	)	PUNCT
caryologia-232	206	38	.	.	PUNCT
caryologia-232	207	1	references	reference	NOUN
caryologia-232	207	2	baggerley	baggerley	PROPN
caryologia-232	207	3	ka	ka	PROPN
caryologia-232	207	4	,	,	PUNCT
caryologia-232	207	5	deng	deng	PROPN
caryologia-232	207	6	l	l	PROPN
caryologia-232	207	7	,	,	PUNCT
caryologia-232	207	8	morris	morris	PROPN
caryologia-232	207	9	js	js	PROPN
caryologia-232	207	10	,	,	PUNCT
caryologia-232	207	11	aldaz	aldaz	ADP
caryologia-232	207	12	cm	cm	NOUN
caryologia-232	207	13	.	.	PUNCT
caryologia-232	207	14	2003	2003	NUM
caryologia-232	207	15	.	.	PUNCT
caryologia-232	208	1	differential	differential	ADJ
caryologia-232	208	2	expression	expression	NOUN
caryologia-232	208	3	in	in	ADP
caryologia-232	208	4	sage	sage	NOUN
caryologia-232	208	5	:	:	PUNCT
caryologia-232	208	6	accounting	account	VERB
caryologia-232	208	7	for	for	ADP
caryologia-232	208	8	normal	normal	ADJ
caryologia-232	208	9	between	between	ADP
caryologia-232	208	10	-	-	PUNCT
caryologia-232	208	11	library	library	NOUN
caryologia-232	208	12	variation	variation	NOUN
caryologia-232	208	13	.	.	PUNCT
caryologia-232	209	1	bioinformatics	bioinformatic	NOUN
caryologia-232	209	2	.	.	PUNCT
caryologia-232	210	1	19	19	NUM
caryologia-232	210	2	:	:	SYM
caryologia-232	210	3	1477	1477	NUM
caryologia-232	210	4	–	–	PUNCT
caryologia-232	210	5	1483	1483	NUM
caryologia-232	210	6	.	.	PUNCT
caryologia-232	211	1	barghini	barghini	PROPN
caryologia-232	211	2	e	e	PROPN
caryologia-232	211	3	,	,	PUNCT
caryologia-232	211	4	mascagni	mascagni	PROPN
caryologia-232	211	5	f	f	PROPN
caryologia-232	211	6	,	,	PUNCT
caryologia-232	211	7	natali	natali	PROPN
caryologia-232	211	8	l	l	NOUN
caryologia-232	211	9	,	,	PUNCT
caryologia-232	211	10	giordani	giordani	PROPN
caryologia-232	211	11	t	t	PROPN
caryologia-232	211	12	,	,	PUNCT
caryologia-232	211	13	cavallini	cavallini	NOUN
caryologia-232	211	14	a.	a.	NOUN
caryologia-232	211	15	2015a	2015a	NOUN
caryologia-232	211	16	analysis	analysis	NOUN
caryologia-232	211	17	of	of	ADP
caryologia-232	211	18	the	the	DET
caryologia-232	211	19	repetitive	repetitive	ADJ
caryologia-232	211	20	component	component	NOUN
caryologia-232	211	21	and	and	CCONJ
caryologia-232	211	22	retrotransposon	retrotransposon	NOUN
caryologia-232	211	23	population	population	NOUN
caryologia-232	211	24	in	in	ADP
caryologia-232	211	25	the	the	DET
caryologia-232	211	26	genome	genome	NOUN
caryologia-232	211	27	of	of	ADP
caryologia-232	211	28	a	a	DET
caryologia-232	211	29	marine	marine	ADJ
caryologia-232	211	30	angiosperm	angiosperm	NOUN
caryologia-232	211	31	,	,	PUNCT
caryologia-232	211	32	posidonia	posidonia	PROPN
caryologia-232	211	33	oceanica	oceanica	PROPN
caryologia-232	211	34	(	(	PUNCT
caryologia-232	211	35	l.	l.	PROPN
caryologia-232	211	36	)	)	PUNCT
caryologia-232	211	37	delile	delile	PROPN
caryologia-232	211	38	.	.	PUNCT
caryologia-232	212	1	mar	mar	PROPN
caryologia-232	212	2	genomics	genomics	PROPN
caryologia-232	212	3	.	.	PUNCT
caryologia-232	213	1	24	24	NUM
caryologia-232	213	2	:	:	PUNCT
caryologia-232	213	3	397–404	397–404	NUM
caryologia-232	213	4	.	.	PUNCT
caryologia-232	213	5	barghini	barghini	PROPN
caryologia-232	213	6	e	e	PROPN
caryologia-232	213	7	,	,	PUNCT
caryologia-232	213	8	natali	natali	PROPN
caryologia-232	213	9	l	l	NOUN
caryologia-232	213	10	,	,	PUNCT
caryologia-232	213	11	giordani	giordani	PROPN
caryologia-232	213	12	t	t	PROPN
caryologia-232	213	13	,	,	PUNCT
caryologia-232	213	14	cossu	cossu	PROPN
caryologia-232	213	15	rm	rm	PROPN
caryologia-232	213	16	,	,	PUNCT
caryologia-232	213	17	scalabrin	scalabrin	PROPN
caryologia-232	213	18	s	s	PART
caryologia-232	213	19	,	,	PUNCT
caryologia-232	213	20	cattonaro	cattonaro	NOUN
caryologia-232	213	21	f	f	X
caryologia-232	213	22	,	,	PUNCT
caryologia-232	213	23	šimková	šimková	PRON
caryologia-232	213	24	h	h	NOUN
caryologia-232	213	25	,	,	PUNCT
caryologia-232	213	26	vrána	vrána	PROPN
caryologia-232	213	27	j	j	PROPN
caryologia-232	213	28	,	,	PUNCT
caryologia-232	213	29	doležel	doležel	PROPN
caryologia-232	213	30	j	j	PROPN
caryologia-232	213	31	,	,	PUNCT
caryologia-232	213	32	morgante	morgante	PROPN
caryologia-232	213	33	m	m	PROPN
caryologia-232	213	34	,	,	PUNCT
caryologia-232	213	35	cavallini	cavallini	NOUN
caryologia-232	213	36	a.	a.	NOUN
caryologia-232	213	37	2015b	2015b	NUM
caryologia-232	213	38	.	.	PUNCT
caryologia-232	214	1	ltr	ltr	PROPN
caryologia-232	214	2	retrotransposon	retrotransposon	PROPN
caryologia-232	214	3	dynamics	dynamic	NOUN
caryologia-232	214	4	in	in	ADP
caryologia-232	214	5	the	the	DET
caryologia-232	214	6	evolution	evolution	NOUN
caryologia-232	214	7	of	of	ADP
caryologia-232	214	8	the	the	DET
caryologia-232	214	9	olive	olive	NOUN
caryologia-232	214	10	(	(	PUNCT
caryologia-232	214	11	olea	olea	NOUN
caryologia-232	214	12	europaea	europaea	VERB
caryologia-232	214	13	)	)	PUNCT
caryologia-232	214	14	genome	genome	NOUN
caryologia-232	214	15	.	.	PUNCT
caryologia-232	215	1	dna	dna	PROPN
caryologia-232	215	2	res	re	NOUN
caryologia-232	215	3	.	.	PUNCT
caryologia-232	216	1	22	22	NUM
caryologia-232	216	2	:	:	SYM
caryologia-232	216	3	91	91	NUM
caryologia-232	216	4	-	-	SYM
caryologia-232	216	5	100	100	NUM
caryologia-232	216	6	.	.	PUNCT
caryologia-232	217	1	benjamini	benjamini	PROPN
caryologia-232	217	2	y	y	PROPN
caryologia-232	217	3	,	,	PUNCT
caryologia-232	217	4	hochberg	hochberg	PROPN
caryologia-232	217	5	y.	y.	PROPN
caryologia-232	217	6	1995	1995	NUM
caryologia-232	217	7	.	.	PUNCT
caryologia-232	218	1	controlling	control	VERB
caryologia-232	218	2	the	the	DET
caryologia-232	218	3	false	false	ADJ
caryologia-232	218	4	discovery	discovery	NOUN
caryologia-232	218	5	rate	rate	NOUN
caryologia-232	218	6	:	:	PUNCT
caryologia-232	218	7	a	a	DET
caryologia-232	218	8	practical	practical	ADJ
caryologia-232	218	9	and	and	CCONJ
caryologia-232	218	10	powerful	powerful	ADJ
caryologia-232	218	11	approach	approach	NOUN
caryologia-232	218	12	to	to	ADP
caryologia-232	218	13	multiple	multiple	ADJ
caryologia-232	218	14	testing	testing	NOUN
caryologia-232	218	15	.	.	PUNCT
caryologia-232	219	1	j	j	PROPN
caryologia-232	219	2	r	r	NOUN
caryologia-232	219	3	statistic	statistic	NOUN
caryologia-232	219	4	soc	soc	NOUN
caryologia-232	219	5	.	.	PUNCT
caryologia-232	220	1	57	57	NUM
caryologia-232	220	2	:	:	SYM
caryologia-232	220	3	289	289	NUM
caryologia-232	220	4	-	-	SYM
caryologia-232	220	5	300	300	NUM
caryologia-232	220	6	.	.	PUNCT
caryologia-232	220	7	bennetzen	bennetzen	VERB
caryologia-232	220	8	jl	jl	PROPN
caryologia-232	220	9	.	.	PROPN
caryologia-232	220	10	2000	2000	NUM
caryologia-232	220	11	.	.	PUNCT
caryologia-232	221	1	transposable	transposable	ADJ
caryologia-232	221	2	elements	element	NOUN
caryologia-232	221	3	contributions	contribution	NOUN
caryologia-232	221	4	to	to	PART
caryologia-232	221	5	plant	plant	VERB
caryologia-232	221	6	gene	gene	NOUN
caryologia-232	221	7	and	and	CCONJ
caryologia-232	221	8	genome	genome	NOUN
caryologia-232	221	9	evolution	evolution	NOUN
caryologia-232	221	10	.	.	PUNCT
caryologia-232	222	1	plant	plant	NOUN
caryologia-232	222	2	mol	mol	ADP
caryologia-232	222	3	biol	biol	PROPN
caryologia-232	222	4	.	.	PUNCT
caryologia-232	223	1	42	42	NUM
caryologia-232	223	2	:	:	PUNCT
caryologia-232	224	1	251–269	251–269	NUM
caryologia-232	224	2	.	.	PUNCT
caryologia-232	225	1	bolger	bolger	PROPN
caryologia-232	225	2	am	be	AUX
caryologia-232	225	3	,	,	PUNCT
caryologia-232	225	4	lohse	lohse	PROPN
caryologia-232	225	5	m	m	PROPN
caryologia-232	225	6	,	,	PUNCT
caryologia-232	225	7	usadel	usadel	PROPN
caryologia-232	225	8	b.	b.	PROPN
caryologia-232	225	9	2014	2014	NUM
caryologia-232	225	10	.	.	PUNCT
caryologia-232	226	1	trimmomatic	trimmomatic	ADJ
caryologia-232	226	2	:	:	PUNCT
caryologia-232	226	3	a	a	DET
caryologia-232	226	4	flexible	flexible	ADJ
caryologia-232	226	5	trimmer	trimmer	NOUN
caryologia-232	226	6	for	for	ADP
caryologia-232	226	7	illumina	illumina	ADJ
caryologia-232	226	8	sequence	sequence	NOUN
caryologia-232	226	9	data	datum	NOUN
caryologia-232	226	10	.	.	PUNCT
caryologia-232	227	1	bioinformatics	bioinformatic	NOUN
caryologia-232	227	2	.	.	PUNCT
caryologia-232	228	1	30	30	NUM
caryologia-232	228	2	:	:	PUNCT
caryologia-232	228	3	2114	2114	NUM
caryologia-232	228	4	-	-	SYM
caryologia-232	228	5	2120	2120	NUM
caryologia-232	228	6	.	.	PUNCT
caryologia-232	229	1	butelli	butelli	PROPN
caryologia-232	229	2	e	e	PROPN
caryologia-232	229	3	,	,	PUNCT
caryologia-232	229	4	licciardello	licciardello	PROPN
caryologia-232	229	5	c	c	PROPN
caryologia-232	229	6	,	,	PUNCT
caryologia-232	229	7	zhang	zhang	PROPN
caryologia-232	229	8	y	y	PROPN
caryologia-232	229	9	,	,	PUNCT
caryologia-232	229	10	liu	liu	PROPN
caryologia-232	229	11	j	j	PROPN
caryologia-232	229	12	,	,	PUNCT
caryologia-232	229	13	mackay	mackay	PROPN
caryologia-232	229	14	s	s	PROPN
caryologia-232	229	15	,	,	PUNCT
caryologia-232	229	16	bailey	bailey	PROPN
caryologia-232	229	17	p.	p.	PROPN
caryologia-232	229	18	2012	2012	NUM
caryologia-232	229	19	.	.	PUNCT
caryologia-232	230	1	retrotransposons	retrotransposon	NOUN
caryologia-232	230	2	control	control	VERB
caryologia-232	230	3	fruit	fruit	NOUN
caryologia-232	230	4	-	-	PUNCT
caryologia-232	230	5	specific	specific	ADJ
caryologia-232	230	6	,	,	PUNCT
caryologia-232	230	7	colddependent	colddependent	NOUN
caryologia-232	230	8	accumulation	accumulation	NOUN
caryologia-232	230	9	of	of	ADP
caryologia-232	230	10	anthocyanins	anthocyanin	NOUN
caryologia-232	230	11	in	in	ADP
caryologia-232	230	12	blood	blood	NOUN
caryologia-232	230	13	oranges	orange	NOUN
caryologia-232	230	14	.	.	PUNCT
caryologia-232	231	1	plant	plant	NOUN
caryologia-232	231	2	cell	cell	NOUN
caryologia-232	231	3	.	.	PUNCT
caryologia-232	232	1	24	24	NUM
caryologia-232	232	2	:	:	SYM
caryologia-232	232	3	1242	1242	NUM
caryologia-232	232	4	-	-	SYM
caryologia-232	232	5	1255	1255	NUM
caryologia-232	232	6	.	.	PUNCT
caryologia-232	233	1	buti	buti	PROPN
caryologia-232	233	2	m	m	PROPN
caryologia-232	233	3	,	,	PUNCT
caryologia-232	233	4	giordani	giordani	PROPN
caryologia-232	233	5	t	t	PROPN
caryologia-232	233	6	,	,	PUNCT
caryologia-232	233	7	vukich	vukich	PROPN
caryologia-232	233	8	m	m	NOUN
caryologia-232	233	9	,	,	PUNCT
caryologia-232	233	10	gentzbittel	gentzbittel	PROPN
caryologia-232	233	11	l	l	NOUN
caryologia-232	233	12	,	,	PUNCT
caryologia-232	233	13	pistelli	pistelli	PROPN
caryologia-232	233	14	l	l	NOUN
caryologia-232	233	15	,	,	PUNCT
caryologia-232	233	16	cattonaro	cattonaro	NOUN
caryologia-232	233	17	f	f	NOUN
caryologia-232	233	18	,	,	PUNCT
caryologia-232	233	19	morgante	morgante	PROPN
caryologia-232	233	20	m	m	PROPN
caryologia-232	233	21	,	,	PUNCT
caryologia-232	233	22	cavallini	cavallini	VERB
caryologia-232	233	23	a	a	PRON
caryologia-232	233	24	,	,	PUNCT
caryologia-232	233	25	natali	natali	PROPN
caryologia-232	233	26	l.	l.	PROPN
caryologia-232	233	27	2009	2009	NUM
caryologia-232	233	28	.	.	PUNCT
caryologia-232	234	1	hacre1	hacre1	PROPN
caryologia-232	234	2	,	,	PUNCT
caryologia-232	234	3	a	a	DET
caryologia-232	234	4	recently	recently	ADV
caryologia-232	234	5	inserted	insert	VERB
caryologia-232	234	6	copia	copia	NOUN
caryologia-232	234	7	-	-	PUNCT
caryologia-232	234	8	like	like	ADJ
caryologia-232	234	9	retrotransposon	retrotransposon	NOUN
caryologia-232	234	10	of	of	ADP
caryologia-232	234	11	sunflower	sunflower	NOUN
caryologia-232	234	12	(	(	PUNCT
caryologia-232	234	13	helianthus	helianthus	PROPN
caryologia-232	234	14	annuus	annuus	NOUN
caryologia-232	234	15	l.	l.	PROPN
caryologia-232	234	16	)	)	PUNCT
caryologia-232	234	17	.	.	PUNCT
caryologia-232	235	1	genome	genome	NOUN
caryologia-232	235	2	.	.	PUNCT
caryologia-232	236	1	52	52	NUM
caryologia-232	236	2	:	:	PUNCT
caryologia-232	236	3	904	904	NUM
caryologia-232	236	4	-	-	SYM
caryologia-232	236	5	911	911	NUM
caryologia-232	236	6	.	.	PUNCT
caryologia-232	237	1	buti	buti	PROPN
caryologia-232	237	2	m	m	PROPN
caryologia-232	237	3	,	,	PUNCT
caryologia-232	237	4	moretto	moretto	PROPN
caryologia-232	237	5	m	m	PROPN
caryologia-232	237	6	,	,	PUNCT
caryologia-232	237	7	barghini	barghini	PROPN
caryologia-232	237	8	e	e	PROPN
caryologia-232	237	9	,	,	PUNCT
caryologia-232	237	10	mascagni	mascagni	PROPN
caryologia-232	237	11	f	f	PROPN
caryologia-232	237	12	,	,	PUNCT
caryologia-232	237	13	natali	natali	PROPN
caryologia-232	237	14	l	l	NOUN
caryologia-232	237	15	,	,	PUNCT
caryologia-232	237	16	brilli	brilli	NOUN
caryologia-232	237	17	m	m	NOUN
caryologia-232	237	18	,	,	PUNCT
caryologia-232	237	19	lomsadze	lomsadze	VERB
caryologia-232	237	20	a	a	PRON
caryologia-232	237	21	,	,	PUNCT
caryologia-232	237	22	sonego	sonego	NOUN
caryologia-232	237	23	p	p	NOUN
caryologia-232	237	24	,	,	PUNCT
caryologia-232	237	25	et	et	PROPN
caryologia-232	237	26	al	al	PROPN
caryologia-232	237	27	.	.	PROPN
caryologia-232	237	28	2018	2018	NUM
caryologia-232	237	29	.	.	PUNCT
caryologia-232	238	1	the	the	DET
caryologia-232	238	2	genome	genome	NOUN
caryologia-232	238	3	sequence	sequence	NOUN
caryologia-232	238	4	and	and	CCONJ
caryologia-232	238	5	transcriptome	transcriptome	NOUN
caryologia-232	238	6	of	of	ADP
caryologia-232	238	7	potentilla	potentilla	NOUN
caryologia-232	238	8	micrantha	micrantha	PROPN
caryologia-232	238	9	and	and	CCONJ
caryologia-232	238	10	their	their	PRON
caryologia-232	238	11	comparison	comparison	NOUN
caryologia-232	238	12	to	to	ADP
caryologia-232	238	13	fragaria	fragaria	ADJ
caryologia-232	238	14	vesca	vesca	NOUN
caryologia-232	238	15	(	(	PUNCT
caryologia-232	238	16	the	the	DET
caryologia-232	238	17	woodland	woodland	NOUN
caryologia-232	238	18	strawberry	strawberry	NOUN
caryologia-232	238	19	)	)	PUNCT
caryologia-232	238	20	.	.	PUNCT
caryologia-232	239	1	gigascience	gigascience	NOUN
caryologia-232	239	2	.	.	PUNCT
caryologia-232	240	1	7	7	NUM
caryologia-232	240	2	:	:	SYM
caryologia-232	240	3	1	1	NUM
caryologia-232	240	4	-	-	SYM
caryologia-232	240	5	14	14	NUM
caryologia-232	240	6	.	.	PUNCT
caryologia-232	241	1	chang	chang	PROPN
caryologia-232	241	2	w	w	PROPN
caryologia-232	241	3	,	,	PUNCT
caryologia-232	241	4	jääskeläinen	jääskeläinen	PROPN
caryologia-232	241	5	m	m	PROPN
caryologia-232	241	6	,	,	PUNCT
caryologia-232	241	7	li	li	PROPN
caryologia-232	241	8	s	s	PROPN
caryologia-232	241	9	,	,	PUNCT
caryologia-232	241	10	schulman	schulman	NOUN
caryologia-232	241	11	ah	ah	INTJ
caryologia-232	241	12	.	.	PUNCT
caryologia-232	241	13	2013	2013	NUM
caryologia-232	241	14	.	.	PUNCT
caryologia-232	242	1	bare	bare	ADJ
caryologia-232	242	2	retrotransposons	retrotransposon	NOUN
caryologia-232	242	3	are	be	AUX
caryologia-232	242	4	translated	translate	VERB
caryologia-232	242	5	and	and	CCONJ
caryologia-232	242	6	replicated	replicate	VERB
caryologia-232	242	7	via	via	ADP
caryologia-232	242	8	distinct	distinct	ADJ
caryologia-232	242	9	rna	rna	NOUN
caryologia-232	242	10	pools	pool	NOUN
caryologia-232	242	11	.	.	PUNCT
caryologia-232	243	1	plos	plos	PROPN
caryologia-232	243	2	one	one	NUM
caryologia-232	243	3	.	.	PUNCT
caryologia-232	244	1	8	8	NUM
caryologia-232	244	2	:	:	PUNCT
caryologia-232	244	3	e72270	e72270	INTJ
caryologia-232	244	4	.	.	PUNCT
caryologia-232	245	1	cossu	cossu	PROPN
caryologia-232	245	2	rm	rm	PROPN
caryologia-232	245	3	,	,	PUNCT
caryologia-232	245	4	buti	buti	PROPN
caryologia-232	245	5	m	m	PROPN
caryologia-232	245	6	,	,	PUNCT
caryologia-232	245	7	giordani	giordani	PROPN
caryologia-232	245	8	t	t	PROPN
caryologia-232	245	9	,	,	PUNCT
caryologia-232	245	10	natali	natali	PROPN
caryologia-232	245	11	l	l	NOUN
caryologia-232	245	12	,	,	PUNCT
caryologia-232	245	13	cavallini	cavallini	VERB
caryologia-232	245	14	a.	a.	NOUN
caryologia-232	245	15	2012	2012	NUM
caryologia-232	245	16	.	.	PUNCT
caryologia-232	246	1	a	a	DET
caryologia-232	246	2	computational	computational	ADJ
caryologia-232	246	3	study	study	NOUN
caryologia-232	246	4	of	of	ADP
caryologia-232	246	5	the	the	DET
caryologia-232	246	6	dynamics	dynamic	NOUN
caryologia-232	246	7	of	of	ADP
caryologia-232	246	8	ltr	ltr	ADJ
caryologia-232	246	9	retrotransposons	retrotransposon	NOUN
caryologia-232	246	10	in	in	ADP
caryologia-232	246	11	the	the	DET
caryologia-232	246	12	populus	populus	ADJ
caryologia-232	246	13	trichocarpa	trichocarpa	NOUN
caryologia-232	246	14	genome	genome	NOUN
caryologia-232	246	15	.	.	PUNCT
caryologia-232	247	1	tree	tree	NOUN
caryologia-232	247	2	genet	genet	NOUN
caryologia-232	247	3	genomes	genome	NOUN
caryologia-232	247	4	.	.	PUNCT
caryologia-232	248	1	8	8	NUM
caryologia-232	248	2	:	:	PUNCT
caryologia-232	248	3	61–75	61–75	NUM
caryologia-232	248	4	.	.	PUNCT
caryologia-232	249	1	dieguez	dieguez	PROPN
caryologia-232	249	2	mj	mj	PROPN
caryologia-232	249	3	,	,	PUNCT
caryologia-232	249	4	vaucheret	vaucheret	NOUN
caryologia-232	249	5	h	h	PROPN
caryologia-232	249	6	,	,	PUNCT
caryologia-232	249	7	paszkowski	paszkowski	PROPN
caryologia-232	249	8	j	j	PROPN
caryologia-232	249	9	,	,	PUNCT
caryologia-232	249	10	mittelsten	mittelsten	VERB
caryologia-232	249	11	scheid	scheid	NOUN
caryologia-232	249	12	o.	o.	NOUN
caryologia-232	249	13	1998	1998	NUM
caryologia-232	249	14	.	.	PUNCT
caryologia-232	250	1	cytosine	cytosine	NOUN
caryologia-232	250	2	methylation	methylation	NOUN
caryologia-232	250	3	at	at	ADP
caryologia-232	250	4	cg	cg	NOUN
caryologia-232	250	5	and	and	CCONJ
caryologia-232	250	6	cng	cng	PROPN
caryologia-232	250	7	sites	site	NOUN
caryologia-232	250	8	is	be	AUX
caryologia-232	250	9	not	not	PART
caryologia-232	250	10	a	a	DET
caryologia-232	250	11	prerequisite	prerequisite	NOUN
caryologia-232	250	12	for	for	ADP
caryologia-232	250	13	the	the	DET
caryologia-232	250	14	initiation	initiation	NOUN
caryologia-232	250	15	of	of	ADP
caryologia-232	250	16	transcriptional	transcriptional	ADJ
caryologia-232	250	17	gene	gene	NOUN
caryologia-232	250	18	silencing	silence	VERB
caryologia-232	250	19	in	in	ADP
caryologia-232	250	20	plants	plant	NOUN
caryologia-232	250	21	,	,	PUNCT
caryologia-232	250	22	but	but	CCONJ
caryologia-232	250	23	it	it	PRON
caryologia-232	250	24	is	be	AUX
caryologia-232	250	25	required	require	VERB
caryologia-232	250	26	for	for	ADP
caryologia-232	250	27	its	its	PRON
caryologia-232	250	28	maintenance	maintenance	NOUN
caryologia-232	250	29	.	.	PUNCT
caryologia-232	251	1	mol	mol	ADP
caryologia-232	251	2	gen	gen	PROPN
caryologia-232	251	3	genet	genet	NOUN
caryologia-232	251	4	.	.	PUNCT
caryologia-232	252	1	259	259	NUM
caryologia-232	252	2	:	:	PUNCT
caryologia-232	252	3	207–215	207–215	NUM
caryologia-232	252	4	.	.	PUNCT
caryologia-232	252	5	ellinghaus	ellinghaus	PROPN
caryologia-232	253	1	d	d	PROPN
caryologia-232	253	2	,	,	PUNCT
caryologia-232	253	3	kurtz	kurtz	PROPN
caryologia-232	253	4	s	s	PROPN
caryologia-232	253	5	,	,	PUNCT
caryologia-232	253	6	willhoeft	willhoeft	PROPN
caryologia-232	253	7	u.	u.	PROPN
caryologia-232	253	8	2008	2008	NUM
caryologia-232	253	9	.	.	PUNCT
caryologia-232	254	1	ltrharvest	ltrharvest	PROPN
caryologia-232	254	2	,	,	PUNCT
caryologia-232	254	3	an	an	DET
caryologia-232	254	4	efficient	efficient	ADJ
caryologia-232	254	5	and	and	CCONJ
caryologia-232	254	6	flexible	flexible	ADJ
caryologia-232	254	7	software	software	NOUN
caryologia-232	254	8	for	for	ADP
caryologia-232	254	9	de	de	X
caryologia-232	254	10	novo	novo	NOUN
caryologia-232	254	11	detection	detection	NOUN
caryologia-232	254	12	of	of	ADP
caryologia-232	254	13	ltr	ltr	PROPN
caryologia-232	254	14	retrotransposons	retrotransposon	NOUN
caryologia-232	254	15	.	.	PUNCT
caryologia-232	255	1	bmc	bmc	ADJ
caryologia-232	255	2	bioinformatics	bioinformatic	NOUN
caryologia-232	255	3	.	.	PUNCT
caryologia-232	256	1	9	9	NUM
caryologia-232	256	2	:	:	SYM
caryologia-232	256	3	18	18	NUM
caryologia-232	256	4	.	.	X
caryologia-232	256	5	falchi	falchi	PROPN
caryologia-232	256	6	r	r	NOUN
caryologia-232	256	7	,	,	PUNCT
caryologia-232	256	8	vendramin	vendramin	NOUN
caryologia-232	256	9	e	e	NOUN
caryologia-232	256	10	,	,	PUNCT
caryologia-232	256	11	zanon	zanon	PROPN
caryologia-232	256	12	l	l	NOUN
caryologia-232	256	13	,	,	PUNCT
caryologia-232	256	14	scalabrin	scalabrin	PROPN
caryologia-232	256	15	s	s	PART
caryologia-232	256	16	,	,	PUNCT
caryologia-232	256	17	cipriani	cipriani	PROPN
caryologia-232	256	18	g	g	PROPN
caryologia-232	256	19	,	,	PUNCT
caryologia-232	256	20	verde	verde	NOUN
caryologia-232	256	21	i	i	PRON
caryologia-232	256	22	,	,	PUNCT
caryologia-232	256	23	et	et	PROPN
caryologia-232	256	24	al	al	PROPN
caryologia-232	256	25	.	.	PROPN
caryologia-232	256	26	2013	2013	NUM
caryologia-232	256	27	.	.	PUNCT
caryologia-232	257	1	three	three	NUM
caryologia-232	257	2	distinct	distinct	ADJ
caryologia-232	257	3	mutational	mutational	ADJ
caryologia-232	257	4	mechanisms	mechanism	NOUN
caryologia-232	257	5	acting	act	VERB
caryologia-232	257	6	on	on	ADP
caryologia-232	257	7	a	a	DET
caryologia-232	257	8	single	single	ADJ
caryologia-232	257	9	gene	gene	NOUN
caryologia-232	257	10	underpin	underpin	VERB
caryologia-232	257	11	the	the	DET
caryologia-232	257	12	origin	origin	NOUN
caryologia-232	257	13	of	of	ADP
caryologia-232	257	14	yellow	yellow	ADJ
caryologia-232	257	15	flesh	flesh	NOUN
caryologia-232	257	16	in	in	ADP
caryologia-232	257	17	peach	peach	NOUN
caryologia-232	257	18	.	.	PUNCT
caryologia-232	258	1	plant	plant	NOUN
caryologia-232	258	2	j.	j.	PROPN
caryologia-232	258	3	76	76	NUM
caryologia-232	258	4	:	:	PUNCT
caryologia-232	258	5	175	175	NUM
caryologia-232	258	6	-	-	SYM
caryologia-232	258	7	187	187	NUM
caryologia-232	258	8	.	.	PUNCT
caryologia-232	259	1	fan	fan	PROPN
caryologia-232	259	2	fh	fh	PROPN
caryologia-232	259	3	,	,	PUNCT
caryologia-232	259	4	cui	cui	PROPN
caryologia-232	259	5	bw	bw	PROPN
caryologia-232	259	6	,	,	PUNCT
caryologia-232	259	7	zhang	zhang	PROPN
caryologia-232	259	8	t	t	PROPN
caryologia-232	259	9	,	,	PUNCT
caryologia-232	259	10	ding	ding	PROPN
caryologia-232	259	11	gj	gj	PROPN
caryologia-232	259	12	,	,	PUNCT
caryologia-232	259	13	wen	wen	PROPN
caryologia-232	259	14	xp	xp	PROPN
caryologia-232	259	15	.	.	PROPN
caryologia-232	259	16	2014	2014	NUM
caryologia-232	259	17	.	.	PUNCT
caryologia-232	260	1	ltrretrotransposon	ltrretrotransposon	NOUN
caryologia-232	260	2	activation	activation	NOUN
caryologia-232	260	3	,	,	PUNCT
caryologia-232	260	4	irap	irap	NOUN
caryologia-232	260	5	marker	marker	NOUN
caryologia-232	260	6	development	development	NOUN
caryologia-232	260	7	and	and	CCONJ
caryologia-232	260	8	its	its	PRON
caryologia-232	260	9	potential	potential	NOUN
caryologia-232	260	10	in	in	ADP
caryologia-232	260	11	genetic	genetic	ADJ
caryologia-232	260	12	diversity	diversity	NOUN
caryologia-232	260	13	assessment	assessment	NOUN
caryologia-232	260	14	of	of	ADP
caryologia-232	260	15	masson	masson	PROPN
caryologia-232	260	16	pine	pine	PROPN
caryologia-232	260	17	(	(	PUNCT
caryologia-232	260	18	pinus	pinus	NOUN
caryologia-232	260	19	massoniana	massoniana	PROPN
caryologia-232	260	20	)	)	PUNCT
caryologia-232	260	21	.	.	PUNCT
caryologia-232	261	1	tree	tree	NOUN
caryologia-232	261	2	genet	genet	NOUN
caryologia-232	261	3	genomes	genome	NOUN
caryologia-232	261	4	.	.	PUNCT
caryologia-232	262	1	10	10	NUM
caryologia-232	262	2	:	:	PUNCT
caryologia-232	262	3	213–222	213–222	NUM
caryologia-232	262	4	.	.	PUNCT
caryologia-232	263	1	filichkin	filichkin	PROPN
caryologia-232	263	2	sa	sa	PROPN
caryologia-232	263	3	,	,	PUNCT
caryologia-232	263	4	hamilton	hamilton	PROPN
caryologia-232	263	5	m	m	PROPN
caryologia-232	263	6	,	,	PUNCT
caryologia-232	263	7	dharmawardhana	dharmawardhana	PROPN
caryologia-232	263	8	pd	pd	PROPN
caryologia-232	263	9	,	,	PUNCT
caryologia-232	263	10	singh	singh	PROPN
caryologia-232	263	11	sk	sk	PROPN
caryologia-232	263	12	,	,	PUNCT
caryologia-232	263	13	sullivan	sullivan	PROPN
caryologia-232	263	14	c	c	PROPN
caryologia-232	263	15	,	,	PUNCT
caryologia-232	263	16	ben	ben	PROPN
caryologia-232	263	17	-	-	PUNCT
caryologia-232	263	18	hur	hur	PROPN
caryologia-232	264	1	a	a	PROPN
caryologia-232	264	2	,	,	PUNCT
caryologia-232	264	3	reddy	reddy	PROPN
caryologia-232	264	4	asn	asn	PROPN
caryologia-232	264	5	,	,	PUNCT
caryologia-232	264	6	jaiswal	jaiswal	PROPN
caryologia-232	264	7	p.	p.	PROPN
caryologia-232	264	8	2018	2018	NUM
caryologia-232	264	9	.	.	PUNCT
caryologia-232	265	1	abiotic	abiotic	ADJ
caryologia-232	265	2	stresses	stress	NOUN
caryologia-232	265	3	modulate	modulate	VERB
caryologia-232	265	4	landscape	landscape	NOUN
caryologia-232	265	5	of	of	ADP
caryologia-232	265	6	poplar	poplar	ADJ
caryologia-232	265	7	transcriptome	transcriptome	NOUN
caryologia-232	265	8	via	via	ADP
caryologia-232	265	9	alternative	alternative	ADJ
caryologia-232	265	10	splicing	splicing	NOUN
caryologia-232	265	11	,	,	PUNCT
caryologia-232	265	12	differential	differential	VERB
caryologia-232	265	13	intron	intron	ADJ
caryologia-232	265	14	retention	retention	NOUN
caryologia-232	265	15	,	,	PUNCT
caryologia-232	265	16	and	and	CCONJ
caryologia-232	265	17	isoform	isoform	NOUN
caryologia-232	265	18	ratio	ratio	NOUN
caryologia-232	265	19	switching	switching	NOUN
caryologia-232	265	20	.	.	PUNCT
caryologia-232	266	1	front	front	ADJ
caryologia-232	266	2	plant	plant	NOUN
caryologia-232	266	3	sci	sci	PROPN
caryologia-232	266	4	.	.	PROPN
caryologia-232	267	1	9	9	NUM
caryologia-232	267	2	:	:	SYM
caryologia-232	267	3	5	5	NUM
caryologia-232	267	4	.	.	X
caryologia-232	267	5	gao	gao	PROPN
caryologia-232	267	6	x	x	PROPN
caryologia-232	267	7	,	,	PUNCT
caryologia-232	267	8	zhou	zhou	PROPN
caryologia-232	267	9	j	j	PROPN
caryologia-232	267	10	,	,	PUNCT
caryologia-232	267	11	li	li	PROPN
caryologia-232	267	12	j	j	PROPN
caryologia-232	267	13	,	,	PUNCT
caryologia-232	267	14	zou	zou	PROPN
caryologia-232	267	15	x	x	PROPN
caryologia-232	267	16	,	,	PUNCT
caryologia-232	267	17	zhao	zhao	PROPN
caryologia-232	267	18	j	j	PROPN
caryologia-232	267	19	,	,	PUNCT
caryologia-232	267	20	li	li	PROPN
caryologia-232	267	21	q	q	PROPN
caryologia-232	267	22	,	,	PUNCT
caryologia-232	267	23	et	et	PROPN
caryologia-232	267	24	al	al	PROPN
caryologia-232	267	25	.	.	PROPN
caryologia-232	267	26	2015	2015	NUM
caryologia-232	267	27	.	.	PUNCT
caryologia-232	268	1	efficient	efficient	ADJ
caryologia-232	268	2	generation	generation	NOUN
caryologia-232	268	3	of	of	ADP
caryologia-232	268	4	marker	marker	NOUN
caryologia-232	268	5	-	-	PUNCT
caryologia-232	268	6	free	free	ADJ
caryologia-232	268	7	transgenic	transgenic	NOUN
caryologia-232	268	8	rice	rice	NOUN
caryologia-232	268	9	plants	plant	NOUN
caryologia-232	268	10	using	use	VERB
caryologia-232	268	11	an	an	DET
caryologia-232	268	12	improved	improved	ADJ
caryologia-232	268	13	transposon	transposon	NOUN
caryologia-232	268	14	-	-	PUNCT
caryologia-232	268	15	mediated	mediate	VERB
caryologia-232	268	16	transgene	transgene	ADJ
caryologia-232	268	17	reintegration	reintegration	NOUN
caryologia-232	268	18	strategy	strategy	NOUN
caryologia-232	268	19	.	.	PUNCT
caryologia-232	269	1	plant	plant	NOUN
caryologia-232	269	2	physiol	physiol	PROPN
caryologia-232	269	3	.	.	PUNCT
caryologia-232	270	1	167	167	NUM
caryologia-232	270	2	:	:	SYM
caryologia-232	270	3	11	11	NUM
caryologia-232	270	4	-	-	SYM
caryologia-232	270	5	24	24	NUM
caryologia-232	270	6	.	.	PUNCT
caryologia-232	271	1	giordani	giordani	PROPN
caryologia-232	271	2	t	t	PROPN
caryologia-232	271	3	,	,	PUNCT
caryologia-232	271	4	cossu	cossu	PROPN
caryologia-232	271	5	rm	rm	PROPN
caryologia-232	271	6	,	,	PUNCT
caryologia-232	271	7	mascagni	mascagni	PROPN
caryologia-232	271	8	f	f	PROPN
caryologia-232	271	9	,	,	PUNCT
caryologia-232	271	10	marroni	marroni	PROPN
caryologia-232	271	11	f	f	X
caryologia-232	271	12	,	,	PUNCT
caryologia-232	271	13	morgante	morgante	PROPN
caryologia-232	271	14	m	m	PROPN
caryologia-232	271	15	,	,	PUNCT
caryologia-232	271	16	cavallini	cavallini	VERB
caryologia-232	271	17	a	a	PRON
caryologia-232	271	18	,	,	PUNCT
caryologia-232	271	19	natali	natali	PROPN
caryologia-232	271	20	l.	l.	PROPN
caryologia-232	271	21	2016	2016	NUM
caryologia-232	271	22	.	.	PUNCT
caryologia-232	272	1	genome	genome	NOUN
caryologia-232	272	2	-	-	PUNCT
caryologia-232	272	3	wide	wide	ADJ
caryologia-232	272	4	analysis	analysis	NOUN
caryologia-232	272	5	of	of	ADP
caryologia-232	272	6	ltr	ltr	ADJ
caryologia-232	272	7	-	-	PUNCT
caryologia-232	272	8	retrotransposon	retrotransposon	NOUN
caryologia-232	272	9	expression	expression	NOUN
caryologia-232	272	10	in	in	ADP
caryologia-232	272	11	leaves	leave	NOUN
caryologia-232	272	12	of	of	ADP
caryologia-232	272	13	populus	populus	ADJ
caryologia-232	272	14	×	×	NOUN
caryologia-232	272	15	canadensis	canadensis	NOUN
caryologia-232	272	16	water	water	NOUN
caryologia-232	272	17	-	-	PUNCT
caryologia-232	272	18	deprived	deprive	VERB
caryologia-232	272	19	plants	plant	NOUN
caryologia-232	272	20	.	.	PUNCT
caryologia-232	273	1	tree	tree	NOUN
caryologia-232	273	2	genet	genet	NOUN
caryologia-232	273	3	genomes	genome	NOUN
caryologia-232	273	4	.	.	PUNCT
caryologia-232	274	1	12	12	NUM
caryologia-232	274	2	:	:	PUNCT
caryologia-232	274	3	75	75	NUM
caryologia-232	274	4	.	.	PUNCT
caryologia-232	275	1	grandbastien	grandbastien	PROPN
caryologia-232	275	2	ma	ma	PROPN
caryologia-232	275	3	.	.	PROPN
caryologia-232	275	4	1998	1998	NUM
caryologia-232	275	5	.	.	PUNCT
caryologia-232	276	1	activation	activation	NOUN
caryologia-232	276	2	of	of	ADP
caryologia-232	276	3	plant	plant	NOUN
caryologia-232	276	4	retrotransposons	retrotransposon	NOUN
caryologia-232	276	5	under	under	ADP
caryologia-232	276	6	stress	stress	NOUN
caryologia-232	276	7	conditions	condition	NOUN
caryologia-232	276	8	.	.	PUNCT
caryologia-232	277	1	trends	trend	NOUN
caryologia-232	277	2	plant	plant	VERB
caryologia-232	277	3	sci	sci	PROPN
caryologia-232	277	4	.	.	PUNCT
caryologia-232	278	1	3	3	NUM
caryologia-232	278	2	:	:	PUNCT
caryologia-232	278	3	181–189	181–189	NUM
caryologia-232	278	4	.	.	PUNCT
caryologia-232	279	1	grandbastien	grandbastien	PROPN
caryologia-232	279	2	ma	ma	PROPN
caryologia-232	279	3	.	.	PROPN
caryologia-232	279	4	2015	2015	NUM
caryologia-232	279	5	.	.	PUNCT
caryologia-232	280	1	ltr	ltr	PROPN
caryologia-232	280	2	retrotransposons	retrotransposon	NOUN
caryologia-232	280	3	,	,	PUNCT
caryologia-232	280	4	handy	handy	ADJ
caryologia-232	280	5	hitchhikers	hitchhiker	NOUN
caryologia-232	280	6	of	of	ADP
caryologia-232	280	7	plant	plant	NOUN
caryologia-232	280	8	regulation	regulation	NOUN
caryologia-232	280	9	and	and	CCONJ
caryologia-232	280	10	stress	stress	NOUN
caryologia-232	280	11	response	response	NOUN
caryologia-232	280	12	.	.	PUNCT
caryologia-232	281	1	biochim	biochim	PROPN
caryologia-232	281	2	biophys	biophy	NOUN
caryologia-232	281	3	acta	acta	PROPN
caryologia-232	281	4	.	.	PUNCT
caryologia-232	282	1	1849	1849	NUM
caryologia-232	282	2	:	:	PUNCT
caryologia-232	283	1	403–416	403–416	NUM
caryologia-232	283	2	.	.	PUNCT
caryologia-232	284	1	78	78	NUM
caryologia-232	284	2	alberto	alberto	PROPN
caryologia-232	284	3	vangelisti	vangelisti	PROPN
caryologia-232	284	4	et	et	PROPN
caryologia-232	284	5	al	al	PROPN
caryologia-232	284	6	.	.	PROPN
caryologia-232	284	7	hawkins	hawkins	PROPN
caryologia-232	284	8	js	js	PROPN
caryologia-232	284	9	,	,	PUNCT
caryologia-232	284	10	kim	kim	PROPN
caryologia-232	284	11	hr	hr	PROPN
caryologia-232	284	12	,	,	PUNCT
caryologia-232	284	13	nason	nason	PROPN
caryologia-232	284	14	jd	jd	PROPN
caryologia-232	284	15	,	,	PUNCT
caryologia-232	284	16	wing	wing	PROPN
caryologia-232	284	17	ra	ra	PROPN
caryologia-232	284	18	,	,	PUNCT
caryologia-232	284	19	wendel	wendel	PROPN
caryologia-232	284	20	jf	jf	PROPN
caryologia-232	284	21	.	.	PROPN
caryologia-232	284	22	2006	2006	NUM
caryologia-232	284	23	.	.	PUNCT
caryologia-232	285	1	differential	differential	ADJ
caryologia-232	285	2	lineage	lineage	NOUN
caryologia-232	285	3	-	-	PUNCT
caryologia-232	285	4	specific	specific	ADJ
caryologia-232	285	5	amplification	amplification	NOUN
caryologia-232	285	6	of	of	ADP
caryologia-232	285	7	transposable	transposable	ADJ
caryologia-232	285	8	elements	element	NOUN
caryologia-232	285	9	is	be	AUX
caryologia-232	285	10	responsible	responsible	ADJ
caryologia-232	285	11	for	for	ADP
caryologia-232	285	12	genome	genome	NOUN
caryologia-232	285	13	size	size	NOUN
caryologia-232	285	14	variation	variation	NOUN
caryologia-232	285	15	in	in	ADP
caryologia-232	285	16	gossypium	gossypium	NOUN
caryologia-232	285	17	.	.	PUNCT
caryologia-232	286	1	genome	genome	NOUN
caryologia-232	286	2	res	re	NOUN
caryologia-232	286	3	.	.	PUNCT
caryologia-232	287	1	16	16	NUM
caryologia-232	287	2	:	:	PUNCT
caryologia-232	287	3	1252	1252	NUM
caryologia-232	287	4	-	-	SYM
caryologia-232	287	5	1261	1261	NUM
caryologia-232	287	6	.	.	PUNCT
caryologia-232	288	1	he	he	PRON
caryologia-232	288	2	p	p	X
caryologia-232	288	3	,	,	PUNCT
caryologia-232	288	4	ma	ma	PROPN
caryologia-232	288	5	y	y	PROPN
caryologia-232	288	6	,	,	PUNCT
caryologia-232	288	7	dai	dai	PROPN
caryologia-232	288	8	hy	hy	PROPN
caryologia-232	288	9	,	,	PUNCT
caryologia-232	288	10	li	li	PROPN
caryologia-232	288	11	lg	lg	PROPN
caryologia-232	288	12	,	,	PUNCT
caryologia-232	288	13	liu	liu	PROPN
caryologia-232	288	14	yx	yx	PROPN
caryologia-232	288	15	,	,	PUNCT
caryologia-232	288	16	li	li	PROPN
caryologia-232	288	17	h	h	PROPN
caryologia-232	288	18	,	,	PUNCT
caryologia-232	288	19	zhao	zhao	PROPN
caryologia-232	288	20	gl	gl	PROPN
caryologia-232	288	21	,	,	PUNCT
caryologia-232	288	22	zhang	zhang	PROPN
caryologia-232	288	23	zh	zh	PROPN
caryologia-232	288	24	.	.	PROPN
caryologia-232	288	25	2012	2012	NUM
caryologia-232	288	26	.	.	PUNCT
caryologia-232	289	1	characterization	characterization	NOUN
caryologia-232	289	2	of	of	ADP
caryologia-232	289	3	the	the	DET
caryologia-232	289	4	hormone	hormone	NOUN
caryologia-232	289	5	and	and	CCONJ
caryologia-232	289	6	stress	stress	NOUN
caryologia-232	289	7	-	-	PUNCT
caryologia-232	289	8	induced	induce	VERB
caryologia-232	289	9	expression	expression	NOUN
caryologia-232	289	10	of	of	ADP
caryologia-232	289	11	fare1	fare1	PROPN
caryologia-232	289	12	retrotransposon	retrotransposon	PROPN
caryologia-232	289	13	promoter	promoter	NOUN
caryologia-232	289	14	in	in	ADP
caryologia-232	289	15	strawberry	strawberry	NOUN
caryologia-232	289	16	.	.	PUNCT
caryologia-232	290	1	j	j	PROPN
caryologia-232	290	2	plant	plant	NOUN
caryologia-232	290	3	biol	biol	NOUN
caryologia-232	290	4	.	.	PUNCT
caryologia-232	291	1	55	55	NUM
caryologia-232	291	2	:	:	PUNCT
caryologia-232	291	3	1–7	1–7	X
caryologia-232	291	4	.	.	PUNCT
caryologia-232	292	1	he	he	PRON
caryologia-232	292	2	p	p	PROPN
caryologia-232	292	3	,	,	PUNCT
caryologia-232	292	4	ma	ma	PROPN
caryologia-232	292	5	y	y	PROPN
caryologia-232	292	6	,	,	PUNCT
caryologia-232	292	7	zhao	zhao	PROPN
caryologia-232	292	8	g	g	PROPN
caryologia-232	292	9	,	,	PUNCT
caryologia-232	292	10	dai	dai	PROPN
caryologia-232	292	11	h	h	PROPN
caryologia-232	292	12	,	,	PUNCT
caryologia-232	292	13	li	li	PROPN
caryologia-232	292	14	h	h	PROPN
caryologia-232	292	15	,	,	PUNCT
caryologia-232	292	16	chang	chang	PROPN
caryologia-232	292	17	l	l	PROPN
caryologia-232	292	18	,	,	PUNCT
caryologia-232	292	19	zhang	zhang	PROPN
caryologia-232	292	20	zh	zh	PROPN
caryologia-232	292	21	.	.	PROPN
caryologia-232	292	22	2010	2010	NUM
caryologia-232	292	23	.	.	PUNCT
caryologia-232	293	1	fare1	fare1	ADV
caryologia-232	293	2	:	:	PUNCT
caryologia-232	293	3	a	a	DET
caryologia-232	293	4	transcriptionally	transcriptionally	ADV
caryologia-232	293	5	active	active	ADJ
caryologia-232	293	6	ty1	ty1	ADJ
caryologia-232	293	7	-	-	PUNCT
caryologia-232	293	8	copia	copia	ADJ
caryologia-232	293	9	retrotransposon	retrotransposon	NOUN
caryologia-232	293	10	in	in	ADP
caryologia-232	293	11	strawberry	strawberry	PROPN
caryologia-232	293	12	.	.	PUNCT
caryologia-232	294	1	j	j	PROPN
caryologia-232	294	2	plant	plant	NOUN
caryologia-232	294	3	res	re	NOUN
caryologia-232	294	4	.	.	PUNCT
caryologia-232	295	1	123	123	NUM
caryologia-232	295	2	:	:	PUNCT
caryologia-232	296	1	707–714	707–714	NUM
caryologia-232	296	2	.	.	PUNCT
caryologia-232	296	3	ishiguro	ishiguro	PROPN
caryologia-232	296	4	s	s	PROPN
caryologia-232	296	5	,	,	PUNCT
caryologia-232	296	6	ogasawara	ogasawara	ADJ
caryologia-232	296	7	k	k	PROPN
caryologia-232	296	8	,	,	PUNCT
caryologia-232	296	9	fujino	fujino	PROPN
caryologia-232	296	10	k	k	PROPN
caryologia-232	296	11	,	,	PUNCT
caryologia-232	296	12	sato	sato	PROPN
caryologia-232	296	13	y	y	PROPN
caryologia-232	296	14	,	,	PUNCT
caryologia-232	296	15	kishima	kishima	PROPN
caryologia-232	296	16	y.	y.	PROPN
caryologia-232	296	17	2014	2014	NUM
caryologia-232	296	18	.	.	PUNCT
caryologia-232	297	1	low	low	ADJ
caryologia-232	297	2	temperature	temperature	NOUN
caryologia-232	297	3	-	-	PUNCT
caryologia-232	297	4	responsive	responsive	ADJ
caryologia-232	297	5	changes	change	NOUN
caryologia-232	297	6	in	in	ADP
caryologia-232	297	7	the	the	DET
caryologia-232	297	8	anther	anther	ADJ
caryologia-232	297	9	transcriptome	transcriptome	PROPN
caryologia-232	297	10	’s	’s	PART
caryologia-232	297	11	repeat	repeat	NOUN
caryologia-232	297	12	sequences	sequence	NOUN
caryologia-232	297	13	are	be	AUX
caryologia-232	297	14	indicative	indicative	ADJ
caryologia-232	297	15	of	of	ADP
caryologia-232	297	16	stress	stress	NOUN
caryologia-232	297	17	sensitivity	sensitivity	NOUN
caryologia-232	297	18	and	and	CCONJ
caryologia-232	297	19	pollen	pollen	NOUN
caryologia-232	297	20	sterility	sterility	NOUN
caryologia-232	297	21	in	in	ADP
caryologia-232	297	22	rice	rice	NOUN
caryologia-232	297	23	strains	strain	NOUN
caryologia-232	297	24	.	.	PUNCT
caryologia-232	298	1	plant	plant	NOUN
caryologia-232	298	2	physiol	physiol	NOUN
caryologia-232	298	3	.	.	PUNCT
caryologia-232	299	1	164	164	NUM
caryologia-232	299	2	:	:	PUNCT
caryologia-232	299	3	671–682	671–682	NUM
caryologia-232	299	4	.	.	PUNCT
caryologia-232	300	1	islam	islam	PROPN
caryologia-232	300	2	-	-	PUNCT
caryologia-232	300	3	faridi	faridi	PROPN
caryologia-232	300	4	mn	mn	PROPN
caryologia-232	300	5	,	,	PUNCT
caryologia-232	300	6	nelson	nelson	PROPN
caryologia-232	300	7	cd	cd	PROPN
caryologia-232	300	8	,	,	PUNCT
caryologia-232	300	9	difazio	difazio	PROPN
caryologia-232	300	10	sp	sp	ADP
caryologia-232	300	11	,	,	PUNCT
caryologia-232	300	12	gunter	gunter	NOUN
caryologia-232	300	13	le	le	PROPN
caryologia-232	300	14	,	,	PUNCT
caryologia-232	300	15	tuskan	tuskan	PROPN
caryologia-232	300	16	ga	ga	PROPN
caryologia-232	300	17	.	.	PROPN
caryologia-232	300	18	2009	2009	NUM
caryologia-232	300	19	.	.	PUNCT
caryologia-232	301	1	cytogenetic	cytogenetic	ADJ
caryologia-232	301	2	analysis	analysis	NOUN
caryologia-232	301	3	of	of	ADP
caryologia-232	301	4	populus	populus	ADJ
caryologia-232	301	5	trichocarpa	trichocarpa	NOUN
caryologia-232	301	6	ribosomal	ribosomal	NOUN
caryologia-232	301	7	dna	dna	PROPN
caryologia-232	301	8	,	,	PUNCT
caryologia-232	301	9	telomere	telomere	NOUN
caryologia-232	301	10	repeat	repeat	VERB
caryologia-232	301	11	sequence	sequence	NOUN
caryologia-232	301	12	,	,	PUNCT
caryologia-232	301	13	and	and	CCONJ
caryologia-232	301	14	marker	marker	NOUN
caryologia-232	301	15	-	-	PUNCT
caryologia-232	301	16	selected	select	VERB
caryologia-232	301	17	bacs	bac	NOUN
caryologia-232	301	18	.	.	PUNCT
caryologia-232	302	1	cytogenet	cytogenet	NOUN
caryologia-232	302	2	genome	genome	NOUN
caryologia-232	302	3	res	re	NOUN
caryologia-232	302	4	.	.	PUNCT
caryologia-232	303	1	125	125	NUM
caryologia-232	303	2	:	:	PUNCT
caryologia-232	303	3	74–80	74–80	NUM
caryologia-232	303	4	.	.	PUNCT
caryologia-232	304	1	ito	ito	PROPN
caryologia-232	304	2	h	h	PROPN
caryologia-232	304	3	,	,	PUNCT
caryologia-232	304	4	yoshida	yoshida	PROPN
caryologia-232	304	5	t	t	PROPN
caryologia-232	304	6	,	,	PUNCT
caryologia-232	304	7	tsukahara	tsukahara	PROPN
caryologia-232	304	8	s	s	PROPN
caryologia-232	304	9	,	,	PUNCT
caryologia-232	304	10	kawabe	kawabe	PROPN
caryologia-232	304	11	a.	a.	NOUN
caryologia-232	304	12	2013	2013	NUM
caryologia-232	304	13	.	.	PUNCT
caryologia-232	305	1	evolution	evolution	NOUN
caryologia-232	305	2	of	of	ADP
caryologia-232	305	3	the	the	DET
caryologia-232	305	4	onsen	onsen	PROPN
caryologia-232	305	5	retrotransposon	retrotransposon	PROPN
caryologia-232	305	6	family	family	PROPN
caryologia-232	305	7	activated	activate	VERB
caryologia-232	305	8	upon	upon	SCONJ
caryologia-232	305	9	heat	heat	NOUN
caryologia-232	305	10	stress	stress	NOUN
caryologia-232	305	11	in	in	ADP
caryologia-232	305	12	brassicaceae	brassicaceae	PROPN
caryologia-232	305	13	.	.	PUNCT
caryologia-232	306	1	gene	gene	NOUN
caryologia-232	306	2	.	.	PUNCT
caryologia-232	307	1	518	518	NUM
caryologia-232	307	2	:	:	PUNCT
caryologia-232	307	3	256–261	256–261	NUM
caryologia-232	307	4	.	.	PUNCT
caryologia-232	307	5	ito	ito	PROPN
caryologia-232	307	6	h.	h.	PROPN
caryologia-232	307	7	2013	2013	NUM
caryologia-232	307	8	.	.	PUNCT
caryologia-232	308	1	small	small	ADJ
caryologia-232	308	2	rnas	rna	NOUN
caryologia-232	308	3	and	and	CCONJ
caryologia-232	308	4	regulation	regulation	NOUN
caryologia-232	308	5	of	of	ADP
caryologia-232	308	6	transposons	transposon	NOUN
caryologia-232	308	7	in	in	ADP
caryologia-232	308	8	plants	plant	NOUN
caryologia-232	308	9	.	.	PUNCT
caryologia-232	309	1	genes	gene	NOUN
caryologia-232	309	2	genet	genet	PROPN
caryologia-232	309	3	syst	syst	PROPN
caryologia-232	309	4	.	.	PUNCT
caryologia-232	310	1	88	88	NUM
caryologia-232	310	2	:	:	PUNCT
caryologia-232	310	3	3–7	3–7	NUM
caryologia-232	310	4	.	.	PUNCT
caryologia-232	311	1	kashkush	kashkush	PROPN
caryologia-232	311	2	k	k	PROPN
caryologia-232	311	3	,	,	PUNCT
caryologia-232	311	4	feldman	feldman	PROPN
caryologia-232	311	5	m	m	PROPN
caryologia-232	311	6	,	,	PUNCT
caryologia-232	311	7	levy	levy	VERB
caryologia-232	311	8	aa	aa	NOUN
caryologia-232	311	9	.	.	PUNCT
caryologia-232	312	1	2003	2003	NUM
caryologia-232	312	2	.	.	PUNCT
caryologia-232	313	1	transcriptional	transcriptional	ADJ
caryologia-232	313	2	activation	activation	NOUN
caryologia-232	313	3	of	of	ADP
caryologia-232	313	4	retrotransposons	retrotransposon	NOUN
caryologia-232	313	5	alters	alter	VERB
caryologia-232	313	6	the	the	DET
caryologia-232	313	7	expression	expression	NOUN
caryologia-232	313	8	of	of	ADP
caryologia-232	313	9	adjacent	adjacent	ADJ
caryologia-232	313	10	genes	gene	NOUN
caryologia-232	313	11	in	in	ADP
caryologia-232	313	12	wheat	wheat	NOUN
caryologia-232	313	13	.	.	PUNCT
caryologia-232	314	1	nat	nat	PROPN
caryologia-232	314	2	genet	genet	PROPN
caryologia-232	314	3	.	.	PUNCT
caryologia-232	315	1	33	33	NUM
caryologia-232	315	2	:	:	PUNCT
caryologia-232	315	3	102–106	102–106	NUM
caryologia-232	315	4	.	.	PUNCT
caryologia-232	316	1	lisch	lisch	PROPN
caryologia-232	316	2	d.	d.	PROPN
caryologia-232	316	3	2009	2009	NUM
caryologia-232	316	4	.	.	PUNCT
caryologia-232	317	1	epigenetic	epigenetic	ADJ
caryologia-232	317	2	regulation	regulation	NOUN
caryologia-232	317	3	of	of	ADP
caryologia-232	317	4	transposable	transposable	ADJ
caryologia-232	317	5	elements	element	NOUN
caryologia-232	317	6	in	in	ADP
caryologia-232	317	7	plants	plant	NOUN
caryologia-232	317	8	.	.	PUNCT
caryologia-232	318	1	annu	annu	NOUN
caryologia-232	318	2	rev	rev	VERB
caryologia-232	318	3	plant	plant	NOUN
caryologia-232	318	4	biol	biol	NOUN
caryologia-232	318	5	.	.	PUNCT
caryologia-232	319	1	60	60	NUM
caryologia-232	319	2	:	:	PUNCT
caryologia-232	319	3	43–66	43–66	NUM
caryologia-232	319	4	.	.	PUNCT
caryologia-232	320	1	lisch	lisch	PROPN
caryologia-232	320	2	d.	d.	PROPN
caryologia-232	320	3	2013	2013	NUM
caryologia-232	320	4	.	.	PUNCT
caryologia-232	321	1	how	how	SCONJ
caryologia-232	321	2	important	important	ADJ
caryologia-232	321	3	are	be	AUX
caryologia-232	321	4	transposons	transposon	NOUN
caryologia-232	321	5	for	for	ADP
caryologia-232	321	6	plant	plant	NOUN
caryologia-232	321	7	evolution	evolution	NOUN
caryologia-232	321	8	?	?	PUNCT
caryologia-232	322	1	nat	nat	PROPN
caryologia-232	322	2	rev	rev	PROPN
caryologia-232	322	3	genet	genet	PROPN
caryologia-232	322	4	.	.	PUNCT
caryologia-232	323	1	14	14	NUM
caryologia-232	323	2	:	:	SYM
caryologia-232	323	3	49	49	NUM
caryologia-232	323	4	-	-	SYM
caryologia-232	323	5	61	61	NUM
caryologia-232	323	6	.	.	PUNCT
caryologia-232	324	1	liu	liu	PROPN
caryologia-232	324	2	z	z	PROPN
caryologia-232	324	3	,	,	PUNCT
caryologia-232	324	4	han	han	PROPN
caryologia-232	324	5	pf	pf	PROPN
caryologia-232	324	6	,	,	PUNCT
caryologia-232	324	7	tan	tan	PROPN
caryologia-232	324	8	m	m	PROPN
caryologia-232	324	9	,	,	PUNCT
caryologia-232	324	10	shan	shan	PROPN
caryologia-232	324	11	xh	xh	PROPN
caryologia-232	324	12	,	,	PUNCT
caryologia-232	324	13	dong	dong	PROPN
caryologia-232	324	14	yz	yz	PROPN
caryologia-232	324	15	,	,	PUNCT
caryologia-232	324	16	wang	wang	PROPN
caryologia-232	324	17	xz	xz	PROPN
caryologia-232	324	18	,	,	PUNCT
caryologia-232	324	19	fedak	fedak	PROPN
caryologia-232	324	20	g	g	PROPN
caryologia-232	324	21	,	,	PUNCT
caryologia-232	324	22	hao	hao	PROPN
caryologia-232	324	23	s	s	PROPN
caryologia-232	324	24	,	,	PUNCT
caryologia-232	324	25	liu	liu	PROPN
caryologia-232	324	26	b.	b.	PROPN
caryologia-232	324	27	2004	2004	NUM
caryologia-232	324	28	.	.	PUNCT
caryologia-232	325	1	activation	activation	NOUN
caryologia-232	325	2	of	of	ADP
caryologia-232	325	3	a	a	DET
caryologia-232	325	4	rice	rice	NOUN
caryologia-232	325	5	endogenous	endogenous	ADJ
caryologia-232	325	6	retrotransposon	retrotransposon	NOUN
caryologia-232	325	7	tos17	tos17	VERB
caryologia-232	325	8	in	in	ADP
caryologia-232	325	9	tissue	tissue	NOUN
caryologia-232	325	10	culture	culture	NOUN
caryologia-232	325	11	is	be	AUX
caryologia-232	325	12	accompanied	accompany	VERB
caryologia-232	325	13	by	by	ADP
caryologia-232	325	14	cytosine	cytosine	NOUN
caryologia-232	325	15	demethylation	demethylation	NOUN
caryologia-232	325	16	and	and	CCONJ
caryologia-232	325	17	causes	cause	VERB
caryologia-232	325	18	heritable	heritable	ADJ
caryologia-232	325	19	alteration	alteration	NOUN
caryologia-232	325	20	in	in	ADP
caryologia-232	325	21	methylation	methylation	NOUN
caryologia-232	325	22	pattern	pattern	NOUN
caryologia-232	325	23	of	of	ADP
caryologia-232	325	24	flanking	flank	VERB
caryologia-232	325	25	genomic	genomic	ADJ
caryologia-232	325	26	regions	region	NOUN
caryologia-232	325	27	.	.	PUNCT
caryologia-232	326	1	theor	theor	PROPN
caryologia-232	326	2	appl	appl	PROPN
caryologia-232	326	3	genet	genet	PROPN
caryologia-232	326	4	.	.	PUNCT
caryologia-232	327	1	109	109	NUM
caryologia-232	327	2	:	:	PUNCT
caryologia-232	327	3	200–209	200–209	NUM
caryologia-232	327	4	.	.	PUNCT
caryologia-232	328	1	lu	lu	PROPN
caryologia-232	328	2	x	x	PROPN
caryologia-232	328	3	,	,	PUNCT
caryologia-232	328	4	chen	chen	PROPN
caryologia-232	328	5	d	d	PROPN
caryologia-232	328	6	,	,	PUNCT
caryologia-232	328	7	shu	shu	PROPN
caryologia-232	328	8	d	d	PROPN
caryologia-232	328	9	,	,	PUNCT
caryologia-232	328	10	zhang	zhang	PROPN
caryologia-232	328	11	z	z	PROPN
caryologia-232	328	12	,	,	PUNCT
caryologia-232	328	13	wang	wang	PROPN
caryologia-232	328	14	w	w	PROPN
caryologia-232	328	15	,	,	PUNCT
caryologia-232	328	16	klukas	klukas	PROPN
caryologia-232	328	17	c	c	PROPN
caryologia-232	328	18	,	,	PUNCT
caryologia-232	328	19	chen	chen	PROPN
caryologia-232	328	20	l	l	PROPN
caryologia-232	328	21	,	,	PUNCT
caryologia-232	328	22	fan	fan	PROPN
caryologia-232	328	23	y	y	PROPN
caryologia-232	328	24	,	,	PUNCT
caryologia-232	328	25	chen	chen	PROPN
caryologia-232	328	26	m	m	PROPN
caryologia-232	328	27	,	,	PUNCT
caryologia-232	328	28	zhang	zhang	PROPN
caryologia-232	328	29	c.	c.	PROPN
caryologia-232	328	30	2013	2013	NUM
caryologia-232	328	31	.	.	PUNCT
caryologia-232	329	1	the	the	DET
caryologia-232	329	2	differential	differential	ADJ
caryologia-232	329	3	transcription	transcription	NOUN
caryologia-232	329	4	network	network	NOUN
caryologia-232	329	5	between	between	ADP
caryologia-232	329	6	embryo	embryo	NOUN
caryologia-232	329	7	and	and	CCONJ
caryologia-232	329	8	endosperm	endosperm	NOUN
caryologia-232	329	9	in	in	ADP
caryologia-232	329	10	the	the	DET
caryologia-232	329	11	early	early	ADJ
caryologia-232	329	12	developing	develop	VERB
caryologia-232	329	13	maize	maize	NOUN
caryologia-232	329	14	seed	seed	NOUN
caryologia-232	329	15	.	.	PUNCT
caryologia-232	330	1	plant	plant	NOUN
caryologia-232	330	2	physiol	physiol	NOUN
caryologia-232	330	3	.	.	PUNCT
caryologia-232	331	1	162	162	NUM
caryologia-232	331	2	:	:	PUNCT
caryologia-232	331	3	440–455	440–455	NUM
caryologia-232	331	4	.	.	PUNCT
caryologia-232	331	5	ma	ma	PROPN
caryologia-232	331	6	y	y	PROPN
caryologia-232	331	7	,	,	PUNCT
caryologia-232	331	8	sun	sun	PROPN
caryologia-232	331	9	hy	hy	PROPN
caryologia-232	331	10	,	,	PUNCT
caryologia-232	331	11	zhao	zhao	PROPN
caryologia-232	331	12	gl	gl	PROPN
caryologia-232	331	13	,	,	PUNCT
caryologia-232	331	14	dai	dai	PROPN
caryologia-232	331	15	hy	hy	PROPN
caryologia-232	331	16	,	,	PUNCT
caryologia-232	331	17	gao	gao	PROPN
caryologia-232	331	18	xy	xy	PROPN
caryologia-232	331	19	,	,	PUNCT
caryologia-232	331	20	li	li	PROPN
caryologia-232	331	21	h	h	PROPN
caryologia-232	331	22	,	,	PUNCT
caryologia-232	331	23	zhang	zhang	PROPN
caryologia-232	331	24	zh	zh	PROPN
caryologia-232	331	25	.	.	PROPN
caryologia-232	331	26	2008	2008	NUM
caryologia-232	331	27	.	.	PUNCT
caryologia-232	332	1	isolation	isolation	NOUN
caryologia-232	332	2	and	and	CCONJ
caryologia-232	332	3	characterization	characterization	NOUN
caryologia-232	332	4	of	of	ADP
caryologia-232	332	5	genomic	genomic	ADJ
caryologia-232	332	6	retrotransposon	retrotransposon	NOUN
caryologia-232	332	7	sequences	sequence	NOUN
caryologia-232	332	8	from	from	ADP
caryologia-232	332	9	octoploid	octoploid	NOUN
caryologia-232	332	10	strawberry	strawberry	NOUN
caryologia-232	332	11	(	(	PUNCT
caryologia-232	332	12	fragaria	fragaria	PROPN
caryologia-232	332	13	×	×	PROPN
caryologia-232	332	14	ananassa	ananassa	NOUN
caryologia-232	332	15	duch	duch	PROPN
caryologia-232	332	16	.	.	PUNCT
caryologia-232	332	17	)	)	PUNCT
caryologia-232	332	18	.	.	PUNCT
caryologia-232	333	1	plant	plant	NOUN
caryologia-232	333	2	cell	cell	NOUN
caryologia-232	333	3	rep	rep	PROPN
caryologia-232	333	4	.	.	PROPN
caryologia-232	333	5	27	27	NUM
caryologia-232	333	6	:	:	PUNCT
caryologia-232	334	1	499–507	499–507	NUM
caryologia-232	334	2	.	.	PUNCT
caryologia-232	334	3	mascagni	mascagni	PROPN
caryologia-232	334	4	f	f	PROPN
caryologia-232	334	5	,	,	PUNCT
caryologia-232	334	6	cavallini	cavallini	VERB
caryologia-232	334	7	a	a	PRON
caryologia-232	334	8	,	,	PUNCT
caryologia-232	334	9	giordani	giordani	PROPN
caryologia-232	334	10	t	t	PROPN
caryologia-232	334	11	,	,	PUNCT
caryologia-232	334	12	natali	natali	PROPN
caryologia-232	334	13	l.	l.	PROPN
caryologia-232	334	14	2017	2017	NUM
caryologia-232	334	15	.	.	PUNCT
caryologia-232	335	1	different	different	ADJ
caryologia-232	335	2	histories	history	NOUN
caryologia-232	335	3	of	of	ADP
caryologia-232	335	4	two	two	NUM
caryologia-232	335	5	highly	highly	ADV
caryologia-232	335	6	variable	variable	ADJ
caryologia-232	335	7	ltr	ltr	ADJ
caryologia-232	335	8	retrotransposons	retrotransposon	NOUN
caryologia-232	335	9	in	in	ADP
caryologia-232	335	10	sunflower	sunflower	NOUN
caryologia-232	335	11	species	specie	NOUN
caryologia-232	335	12	.	.	PUNCT
caryologia-232	336	1	gene	gene	NOUN
caryologia-232	336	2	.	.	PUNCT
caryologia-232	337	1	634	634	NUM
caryologia-232	337	2	:	:	PUNCT
caryologia-232	337	3	5	5	NUM
caryologia-232	337	4	-	-	SYM
caryologia-232	337	5	14	14	NUM
caryologia-232	337	6	.	.	PUNCT
caryologia-232	338	1	mascagni	mascagni	PROPN
caryologia-232	338	2	f	f	PROPN
caryologia-232	338	3	,	,	PUNCT
caryologia-232	338	4	vangelisti	vangelisti	PROPN
caryologia-232	338	5	a	a	PRON
caryologia-232	338	6	,	,	PUNCT
caryologia-232	338	7	giordani	giordani	PROPN
caryologia-232	338	8	t	t	PROPN
caryologia-232	338	9	,	,	PUNCT
caryologia-232	338	10	cavallini	cavallini	VERB
caryologia-232	338	11	a	a	DET
caryologia-232	338	12	,	,	PUNCT
caryologia-232	338	13	natali	natali	PROPN
caryologia-232	338	14	l.	l.	PROPN
caryologia-232	338	15	2018a	2018a	PROPN
caryologia-232	338	16	.	.	PUNCT
caryologia-232	339	1	specific	specific	ADJ
caryologia-232	339	2	ltr	ltr	ADJ
caryologia-232	339	3	-	-	PUNCT
caryologia-232	339	4	retrotransposons	retrotransposon	NOUN
caryologia-232	339	5	show	show	NOUN
caryologia-232	339	6	copy	copy	VERB
caryologia-232	339	7	number	number	NOUN
caryologia-232	339	8	variations	variation	NOUN
caryologia-232	339	9	between	between	ADP
caryologia-232	339	10	wild	wild	ADJ
caryologia-232	339	11	and	and	CCONJ
caryologia-232	339	12	cultivated	cultivate	VERB
caryologia-232	339	13	sunflowers	sunflower	NOUN
caryologia-232	339	14	.	.	PUNCT
caryologia-232	340	1	genes	gene	NOUN
caryologia-232	340	2	.	.	PUNCT
caryologia-232	341	1	9	9	NUM
caryologia-232	341	2	:	:	SYM
caryologia-232	341	3	433	433	NUM
caryologia-232	341	4	.	.	PUNCT
caryologia-232	342	1	mascagni	mascagni	PROPN
caryologia-232	342	2	f	f	PROPN
caryologia-232	342	3	,	,	PUNCT
caryologia-232	342	4	usai	usai	VERB
caryologia-232	342	5	g	g	PROPN
caryologia-232	342	6	,	,	PUNCT
caryologia-232	342	7	natali	natali	PROPN
caryologia-232	342	8	l	l	NOUN
caryologia-232	342	9	,	,	PUNCT
caryologia-232	342	10	cavallini	cavallini	VERB
caryologia-232	342	11	a	a	PRON
caryologia-232	342	12	,	,	PUNCT
caryologia-232	342	13	giordani	giordani	ADJ
caryologia-232	342	14	t.	t.	PROPN
caryologia-232	342	15	2018b	2018b	NUM
caryologia-232	342	16	.	.	PUNCT
caryologia-232	343	1	a	a	DET
caryologia-232	343	2	comparison	comparison	NOUN
caryologia-232	343	3	of	of	ADP
caryologia-232	343	4	methods	method	NOUN
caryologia-232	343	5	for	for	ADP
caryologia-232	343	6	ltr	ltr	ADJ
caryologia-232	343	7	-	-	PUNCT
caryologia-232	343	8	retrotransposon	retrotransposon	NOUN
caryologia-232	343	9	insertion	insertion	NOUN
caryologia-232	343	10	time	time	NOUN
caryologia-232	343	11	profiling	profiling	NOUN
caryologia-232	343	12	in	in	ADP
caryologia-232	343	13	the	the	DET
caryologia-232	343	14	populus	populus	ADJ
caryologia-232	343	15	trichocarpa	trichocarpa	NOUN
caryologia-232	343	16	genome	genome	NOUN
caryologia-232	343	17	.	.	PUNCT
caryologia-232	344	1	caryologia	caryologia	ADJ
caryologia-232	344	2	.	.	PUNCT
caryologia-232	345	1	71	71	NUM
caryologia-232	345	2	:	:	SYM
caryologia-232	345	3	85	85	NUM
caryologia-232	345	4	-	-	SYM
caryologia-232	345	5	92	92	NUM
caryologia-232	345	6	.	.	PUNCT
caryologia-232	346	1	mascagni	mascagni	PROPN
caryologia-232	346	2	f	f	PROPN
caryologia-232	346	3	,	,	PUNCT
caryologia-232	346	4	vangelisti	vangelisti	PROPN
caryologia-232	346	5	a	a	PRON
caryologia-232	346	6	,	,	PUNCT
caryologia-232	346	7	usai	usai	VERB
caryologia-232	346	8	g	g	PROPN
caryologia-232	346	9	,	,	PUNCT
caryologia-232	346	10	giordani	giordani	PROPN
caryologia-232	346	11	t	t	PROPN
caryologia-232	346	12	,	,	PUNCT
caryologia-232	346	13	cavallini	cavallini	VERB
caryologia-232	346	14	a	a	PRON
caryologia-232	346	15	,	,	PUNCT
caryologia-232	346	16	natali	natali	PROPN
caryologia-232	346	17	l.	l.	PROPN
caryologia-232	346	18	2019	2019	NUM
caryologia-232	346	19	.	.	PUNCT
caryologia-232	347	1	a	a	DET
caryologia-232	347	2	computational	computational	ADJ
caryologia-232	347	3	genome	genome	NOUN
caryologia-232	347	4	-	-	PUNCT
caryologia-232	347	5	wide	wide	ADJ
caryologia-232	347	6	analysis	analysis	NOUN
caryologia-232	347	7	of	of	ADP
caryologia-232	347	8	long	long	ADJ
caryologia-232	347	9	terminal	terminal	ADJ
caryologia-232	347	10	repeats	repeat	NOUN
caryologia-232	347	11	retrotransposon	retrotransposon	NOUN
caryologia-232	347	12	expression	expression	NOUN
caryologia-232	347	13	in	in	ADP
caryologia-232	347	14	sunflower	sunflower	NOUN
caryologia-232	347	15	roots	root	NOUN
caryologia-232	347	16	(	(	PUNCT
caryologia-232	347	17	helianthus	helianthus	PROPN
caryologia-232	347	18	annuus	annuus	NOUN
caryologia-232	347	19	l.	l.	PROPN
caryologia-232	347	20	)	)	PUNCT
caryologia-232	347	21	.	.	PUNCT
caryologia-232	348	1	submitted	submit	VERB
caryologia-232	348	2	.	.	PUNCT
caryologia-232	349	1	meignin	meignin	PROPN
caryologia-232	349	2	c	c	PROPN
caryologia-232	349	3	,	,	PUNCT
caryologia-232	349	4	bailly	bailly	PROPN
caryologia-232	349	5	jl	jl	PROPN
caryologia-232	349	6	,	,	PUNCT
caryologia-232	349	7	arnaud	arnaud	PROPN
caryologia-232	349	8	f	f	X
caryologia-232	349	9	,	,	PUNCT
caryologia-232	349	10	dastugue	dastugue	NOUN
caryologia-232	349	11	b	b	PROPN
caryologia-232	349	12	,	,	PUNCT
caryologia-232	349	13	vaury	vaury	PROPN
caryologia-232	349	14	c.	c.	PROPN
caryologia-232	349	15	2003	2003	NUM
caryologia-232	349	16	.	.	PUNCT
caryologia-232	350	1	the	the	DET
caryologia-232	350	2	5	5	NUM
caryologia-232	350	3	’	'	PUNCT
caryologia-232	350	4	untranslated	untranslated	ADJ
caryologia-232	350	5	region	region	NOUN
caryologia-232	350	6	and	and	CCONJ
caryologia-232	350	7	gag	gag	NOUN
caryologia-232	350	8	product	product	NOUN
caryologia-232	350	9	of	of	ADP
caryologia-232	350	10	idefix	idefix	NOUN
caryologia-232	350	11	,	,	PUNCT
caryologia-232	350	12	a	a	DET
caryologia-232	350	13	long	long	ADJ
caryologia-232	350	14	terminal	terminal	ADJ
caryologia-232	350	15	repeat	repeat	NOUN
caryologia-232	350	16	retrotransposon	retrotransposon	NOUN
caryologia-232	350	17	from	from	ADP
caryologia-232	350	18	drosophila	drosophila	PROPN
caryologia-232	350	19	melanogaster	melanogaster	NOUN
caryologia-232	350	20	,	,	PUNCT
caryologia-232	350	21	act	act	VERB
caryologia-232	350	22	together	together	ADV
caryologia-232	350	23	to	to	PART
caryologia-232	350	24	initiate	initiate	VERB
caryologia-232	350	25	a	a	DET
caryologia-232	350	26	switch	switch	NOUN
caryologia-232	350	27	between	between	ADP
caryologia-232	350	28	translated	translate	VERB
caryologia-232	350	29	and	and	CCONJ
caryologia-232	350	30	untranslated	untranslated	ADJ
caryologia-232	350	31	states	state	NOUN
caryologia-232	350	32	of	of	ADP
caryologia-232	350	33	the	the	DET
caryologia-232	350	34	genomic	genomic	NOUN
caryologia-232	350	35	mrna	mrna	PROPN
caryologia-232	350	36	.	.	PUNCT
caryologia-232	351	1	mol	mol	ADP
caryologia-232	351	2	cell	cell	NOUN
caryologia-232	351	3	biol	biol	NOUN
caryologia-232	351	4	.	.	PUNCT
caryologia-232	352	1	23	23	NUM
caryologia-232	352	2	:	:	SYM
caryologia-232	352	3	8246–8254	8246–8254	NUM
caryologia-232	352	4	.	.	PUNCT
caryologia-232	353	1	meyers	meyers	PROPN
caryologia-232	353	2	bc	bc	PROPN
caryologia-232	353	3	,	,	PUNCT
caryologia-232	353	4	tingey	tingey	ADV
caryologia-232	353	5	sv	sv	PROPN
caryologia-232	353	6	,	,	PUNCT
caryologia-232	353	7	morgante	morgante	ADJ
caryologia-232	353	8	m.	m.	NOUN
caryologia-232	353	9	2001	2001	NUM
caryologia-232	353	10	.	.	PUNCT
caryologia-232	354	1	abundance	abundance	NOUN
caryologia-232	354	2	,	,	PUNCT
caryologia-232	354	3	distribution	distribution	NOUN
caryologia-232	354	4	,	,	PUNCT
caryologia-232	354	5	and	and	CCONJ
caryologia-232	354	6	transcriptional	transcriptional	ADJ
caryologia-232	354	7	activity	activity	NOUN
caryologia-232	354	8	of	of	ADP
caryologia-232	354	9	repetitive	repetitive	ADJ
caryologia-232	354	10	elements	element	NOUN
caryologia-232	354	11	in	in	ADP
caryologia-232	354	12	the	the	DET
caryologia-232	354	13	maize	maize	NOUN
caryologia-232	354	14	genome	genome	NOUN
caryologia-232	354	15	.	.	PUNCT
caryologia-232	355	1	genome	genome	NOUN
caryologia-232	355	2	res	re	NOUN
caryologia-232	355	3	.	.	PUNCT
caryologia-232	356	1	11	11	NUM
caryologia-232	356	2	:	:	SYM
caryologia-232	356	3	1660–1676	1660–1676	NUM
caryologia-232	356	4	.	.	PUNCT
caryologia-232	356	5	mortazavi	mortazavi	VERB
caryologia-232	356	6	a	a	PRON
caryologia-232	356	7	,	,	PUNCT
caryologia-232	356	8	williams	williams	PROPN
caryologia-232	356	9	ba	ba	PROPN
caryologia-232	356	10	,	,	PUNCT
caryologia-232	356	11	mccue	mccue	PROPN
caryologia-232	356	12	k	k	PROPN
caryologia-232	356	13	,	,	PUNCT
caryologia-232	356	14	schaeffer	schaeffer	PROPN
caryologia-232	356	15	l	l	PROPN
caryologia-232	356	16	,	,	PUNCT
caryologia-232	356	17	wold	wold	PROPN
caryologia-232	356	18	b.	b.	PROPN
caryologia-232	356	19	2008	2008	NUM
caryologia-232	356	20	.	.	PUNCT
caryologia-232	357	1	mapping	mapping	NOUN
caryologia-232	357	2	and	and	CCONJ
caryologia-232	357	3	quantifying	quantifying	ADJ
caryologia-232	357	4	mammalian	mammalian	ADJ
caryologia-232	357	5	transcriptomes	transcriptome	NOUN
caryologia-232	357	6	by	by	ADP
caryologia-232	357	7	rna	rna	PROPN
caryologia-232	357	8	-	-	PUNCT
caryologia-232	357	9	seq	seq	NOUN
caryologia-232	357	10	.	.	PUNCT
caryologia-232	358	1	nature	nature	NOUN
caryologia-232	358	2	meth	meth	NOUN
caryologia-232	358	3	.	.	PUNCT
caryologia-232	359	1	5	5	NUM
caryologia-232	359	2	:	:	PUNCT
caryologia-232	359	3	621–628	621–628	NUM
caryologia-232	359	4	.	.	PUNCT
caryologia-232	360	1	natali	natali	PROPN
caryologia-232	360	2	l	l	PROPN
caryologia-232	360	3	,	,	PUNCT
caryologia-232	360	4	cossu	cossu	PROPN
caryologia-232	360	5	rm	rm	PROPN
caryologia-232	360	6	,	,	PUNCT
caryologia-232	360	7	mascagni	mascagni	PROPN
caryologia-232	360	8	f	f	PROPN
caryologia-232	360	9	,	,	PUNCT
caryologia-232	360	10	giordani	giordani	PROPN
caryologia-232	360	11	t	t	PROPN
caryologia-232	360	12	,	,	PUNCT
caryologia-232	360	13	cavallini	cavallini	NOUN
caryologia-232	360	14	a.	a.	NOUN
caryologia-232	360	15	2015	2015	NUM
caryologia-232	360	16	.	.	PUNCT
caryologia-232	361	1	a	a	DET
caryologia-232	361	2	survey	survey	NOUN
caryologia-232	361	3	of	of	ADP
caryologia-232	361	4	gypsy	gypsy	PROPN
caryologia-232	361	5	and	and	CCONJ
caryologia-232	361	6	copia	copia	PROPN
caryologia-232	361	7	ltr	ltr	PROPN
caryologia-232	361	8	-	-	PUNCT
caryologia-232	361	9	retrotransposon	retrotransposon	NOUN
caryologia-232	361	10	superfamilies	superfamily	NOUN
caryologia-232	361	11	and	and	CCONJ
caryologia-232	361	12	lineages	lineage	NOUN
caryologia-232	361	13	and	and	CCONJ
caryologia-232	361	14	their	their	PRON
caryologia-232	361	15	distinct	distinct	ADJ
caryologia-232	361	16	dynamics	dynamic	NOUN
caryologia-232	361	17	in	in	ADP
caryologia-232	361	18	the	the	DET
caryologia-232	361	19	populus	populus	ADJ
caryologia-232	361	20	trichocarpa	trichocarpa	NOUN
caryologia-232	361	21	(	(	PUNCT
caryologia-232	361	22	l.	l.	NOUN
caryologia-232	361	23	)	)	PUNCT
caryologia-232	361	24	genome	genome	NOUN
caryologia-232	361	25	.	.	PUNCT
caryologia-232	362	1	tree	tree	NOUN
caryologia-232	362	2	genet	genet	NOUN
caryologia-232	362	3	.	.	PUNCT
caryologia-232	363	1	genomes	genome	NOUN
caryologia-232	363	2	.	.	PUNCT
caryologia-232	364	1	11	11	NUM
caryologia-232	364	2	:	:	SYM
caryologia-232	364	3	107	107	NUM
caryologia-232	364	4	.	.	PUNCT
caryologia-232	365	1	neumann	neumann	PROPN
caryologia-232	365	2	p	p	PROPN
caryologia-232	365	3	,	,	PUNCT
caryologia-232	365	4	navrátilová	navrátilová	PROPN
caryologia-232	365	5	a	a	X
caryologia-232	365	6	,	,	PUNCT
caryologia-232	365	7	koblížková	koblížková	PROPN
caryologia-232	365	8	a	a	PRON
caryologia-232	365	9	,	,	PUNCT
caryologia-232	365	10	kejnovský	kejnovský	PROPN
caryologia-232	365	11	e	e	PROPN
caryologia-232	365	12	,	,	PUNCT
caryologia-232	365	13	hřibová	hřibová	PROPN
caryologia-232	365	14	e	e	PROPN
caryologia-232	365	15	,	,	PUNCT
caryologia-232	365	16	hobza	hobza	PROPN
caryologia-232	365	17	r	r	PROPN
caryologia-232	365	18	,	,	PUNCT
caryologia-232	365	19	widmer	widmer	X
caryologia-232	365	20	a	a	X
caryologia-232	365	21	,	,	PUNCT
caryologia-232	365	22	doležel	doležel	PROPN
caryologia-232	365	23	j	j	PROPN
caryologia-232	365	24	,	,	PUNCT
caryologia-232	365	25	macas	macas	PROPN
caryologia-232	365	26	j.	j.	PROPN
caryologia-232	365	27	2011	2011	NUM
caryologia-232	365	28	.	.	PUNCT
caryologia-232	366	1	plant	plant	VERB
caryologia-232	366	2	centromeric	centromeric	ADJ
caryologia-232	366	3	retrotransposons	retrotransposon	NOUN
caryologia-232	366	4	:	:	PUNCT
caryologia-232	366	5	a	a	DET
caryologia-232	366	6	structural	structural	ADJ
caryologia-232	366	7	and	and	CCONJ
caryologia-232	366	8	cytogenetic	cytogenetic	ADJ
caryologia-232	366	9	perspective	perspective	NOUN
caryologia-232	366	10	.	.	PUNCT
caryologia-232	367	1	mob	mob	PROPN
caryologia-232	367	2	dna	dna	PROPN
caryologia-232	367	3	.	.	PUNCT
caryologia-232	368	1	2	2	NUM
caryologia-232	368	2	:	:	SYM
caryologia-232	368	3	4	4	NUM
caryologia-232	368	4	.	.	X
caryologia-232	368	5	neumann	neumann	PROPN
caryologia-232	368	6	p	p	X
caryologia-232	368	7	,	,	PUNCT
caryologia-232	368	8	novák	novák	NOUN
caryologia-232	368	9	p	p	X
caryologia-232	368	10	,	,	PUNCT
caryologia-232	368	11	hoštáková	hoštáková	NOUN
caryologia-232	368	12	n	n	CCONJ
caryologia-232	368	13	,	,	PUNCT
caryologia-232	368	14	macas	macas	PROPN
caryologia-232	368	15	j.	j.	PROPN
caryologia-232	368	16	2019	2019	NUM
caryologia-232	368	17	.	.	PUNCT
caryologia-232	369	1	systematic	systematic	ADJ
caryologia-232	369	2	survey	survey	NOUN
caryologia-232	369	3	of	of	ADP
caryologia-232	369	4	plant	plant	NOUN
caryologia-232	369	5	ltr	ltr	NOUN
caryologia-232	369	6	retrotransposons	retrotransposon	NOUN
caryologia-232	369	7	elucidates	elucidate	VERB
caryologia-232	369	8	phylogenetic	phylogenetic	ADJ
caryologia-232	369	9	relationships	relationship	NOUN
caryologia-232	369	10	of	of	ADP
caryologia-232	369	11	their	their	PRON
caryologia-232	369	12	polyprotein	polyprotein	ADJ
caryologia-232	369	13	domains	domain	NOUN
caryologia-232	369	14	and	and	CCONJ
caryologia-232	369	15	provides	provide	VERB
caryologia-232	369	16	a	a	DET
caryologia-232	369	17	reference	reference	NOUN
caryologia-232	369	18	for	for	ADP
caryologia-232	369	19	element	element	ADJ
caryologia-232	369	20	classification	classification	NOUN
caryologia-232	369	21	.	.	PUNCT
caryologia-232	370	1	mob	mob	PROPN
caryologia-232	370	2	dna	dna	PROPN
caryologia-232	370	3	.	.	PUNCT
caryologia-232	371	1	10	10	NUM
caryologia-232	371	2	:	:	SYM
caryologia-232	371	3	1	1	X
caryologia-232	371	4	.	.	X
caryologia-232	371	5	novák	novák	PROPN
caryologia-232	371	6	p	p	PROPN
caryologia-232	371	7	,	,	PUNCT
caryologia-232	371	8	neumann	neumann	PROPN
caryologia-232	371	9	p	p	PROPN
caryologia-232	371	10	,	,	PUNCT
caryologia-232	371	11	pech	pech	PROPN
caryologia-232	371	12	j	j	PROPN
caryologia-232	371	13	,	,	PUNCT
caryologia-232	371	14	steinhaisl	steinhaisl	PROPN
caryologia-232	371	15	j	j	PROPN
caryologia-232	371	16	,	,	PUNCT
caryologia-232	371	17	macas	macas	PROPN
caryologia-232	371	18	j.	j.	PROPN
caryologia-232	371	19	2013	2013	PROPN
caryologia-232	371	20	.	.	PUNCT
caryologia-232	372	1	repeatexplorer	repeatexplorer	NOUN
caryologia-232	372	2	:	:	PUNCT
caryologia-232	372	3	a	a	DET
caryologia-232	372	4	galaxy	galaxy	NOUN
caryologia-232	372	5	based	base	VERB
caryologia-232	372	6	web	web	NOUN
caryologia-232	372	7	server	server	NOUN
caryologia-232	372	8	for	for	ADP
caryologia-232	372	9	genome	genome	NOUN
caryologia-232	372	10	-	-	PUNCT
caryologia-232	372	11	wide	wide	ADJ
caryologia-232	372	12	characterization	characterization	NOUN
caryologia-232	372	13	of	of	ADP
caryologia-232	372	14	eukaryotic	eukaryotic	ADJ
caryologia-232	372	15	repetitive	repetitive	ADJ
caryologia-232	372	16	elements	element	NOUN
caryologia-232	372	17	from	from	ADP
caryologia-232	372	18	next	next	ADJ
caryologia-232	372	19	generation	generation	NOUN
caryologia-232	372	20	sequence	sequence	NOUN
caryologia-232	372	21	reads	read	VERB
caryologia-232	372	22	.	.	PUNCT
caryologia-232	373	1	bioinformatics	bioinformatics	NOUN
caryologia-232	373	2	.	.	PUNCT
caryologia-232	374	1	29	29	NUM
caryologia-232	374	2	:	:	PUNCT
caryologia-232	375	1	792–793	792–793	NUM
caryologia-232	375	2	.	.	X
caryologia-232	375	3	rico	rico	PROPN
caryologia-232	375	4	-	-	PUNCT
caryologia-232	375	5	cabanas	cabanas	PROPN
caryologia-232	375	6	l	l	NOUN
caryologia-232	375	7	,	,	PUNCT
caryologia-232	375	8	martínez	martínez	PROPN
caryologia-232	375	9	-	-	PUNCT
caryologia-232	375	10	izquierdo	izquierdo	PROPN
caryologia-232	375	11	ja	ja	PROPN
caryologia-232	375	12	.	.	PROPN
caryologia-232	375	13	2007	2007	NUM
caryologia-232	375	14	.	.	PUNCT
caryologia-232	376	1	cire1	cire1	PROPN
caryologia-232	376	2	,	,	PUNCT
caryologia-232	376	3	a	a	DET
caryologia-232	376	4	novel	novel	NOUN
caryologia-232	376	5	transcriptionally	transcriptionally	ADV
caryologia-232	376	6	active	active	ADJ
caryologia-232	376	7	ty1	ty1	PROPN
caryologia-232	376	8	-	-	PUNCT
caryologia-232	376	9	copia	copia	ADJ
caryologia-232	376	10	retrotransposon	retrotransposon	NOUN
caryologia-232	376	11	from	from	ADP
caryologia-232	376	12	citrus	citrus	NOUN
caryologia-232	376	13	sinensis	sinensis	NOUN
caryologia-232	376	14	.	.	PUNCT
caryologia-232	377	1	mol	mol	ADP
caryologia-232	377	2	genet	genet	PROPN
caryologia-232	377	3	genom	genom	PROPN
caryologia-232	377	4	.	.	PUNCT
caryologia-232	378	1	277	277	NUM
caryologia-232	378	2	:	:	PUNCT
caryologia-232	378	3	365	365	NUM
caryologia-232	378	4	.	.	PUNCT
caryologia-232	379	1	sanmiguel	sanmiguel	PROPN
caryologia-232	379	2	p	p	NOUN
caryologia-232	379	3	,	,	PUNCT
caryologia-232	379	4	gaut	gaut	X
caryologia-232	379	5	bs	bs	PROPN
caryologia-232	379	6	,	,	PUNCT
caryologia-232	379	7	tikhonov	tikhonov	NOUN
caryologia-232	379	8	a	a	PRON
caryologia-232	379	9	,	,	PUNCT
caryologia-232	379	10	nakajima	nakajima	PROPN
caryologia-232	379	11	y	y	PROPN
caryologia-232	379	12	,	,	PUNCT
caryologia-232	379	13	bennetzen	bennetzen	NOUN
caryologia-232	379	14	jl	jl	NOUN
caryologia-232	379	15	.	.	PROPN
caryologia-232	380	1	1998	1998	NUM
caryologia-232	380	2	.	.	PUNCT
caryologia-232	381	1	the	the	DET
caryologia-232	381	2	paleontology	paleontology	NOUN
caryologia-232	381	3	of	of	ADP
caryologia-232	381	4	intergene	intergene	ADJ
caryologia-232	381	5	retrotransposons	retrotransposon	NOUN
caryologia-232	381	6	of	of	ADP
caryologia-232	381	7	maize	maize	NOUN
caryologia-232	381	8	.	.	PUNCT
caryologia-232	382	1	nat	nat	PROPN
caryologia-232	382	2	genet	genet	PROPN
caryologia-232	382	3	.	.	PUNCT
caryologia-232	383	1	20	20	NUM
caryologia-232	383	2	:	:	PUNCT
caryologia-232	383	3	43–45	43–45	NUM
caryologia-232	383	4	.	.	PUNCT
caryologia-232	384	1	79genome	79genome	NUM
caryologia-232	384	2	analysis	analysis	NOUN
caryologia-232	384	3	of	of	ADP
caryologia-232	384	4	long	long	ADJ
caryologia-232	384	5	-	-	PUNCT
caryologia-232	384	6	terminal	terminal	ADJ
caryologia-232	384	7	-	-	PUNCT
caryologia-232	384	8	repeat	repeat	NOUN
caryologia-232	384	9	retrotransposon	retrotransposon	NOUN
caryologia-232	384	10	transcription	transcription	NOUN
caryologia-232	384	11	in	in	ADP
caryologia-232	384	12	leaves	leave	NOUN
caryologia-232	384	13	of	of	ADP
caryologia-232	384	14	populus	populus	ADJ
caryologia-232	384	15	trichocarpa	trichocarpa	NOUN
caryologia-232	384	16	slavov	slavov	PROPN
caryologia-232	384	17	gt	gt	PROPN
caryologia-232	384	18	,	,	PUNCT
caryologia-232	384	19	difazio	difazio	PROPN
caryologia-232	384	20	sp	sp	PROPN
caryologia-232	384	21	,	,	PUNCT
caryologia-232	384	22	martin	martin	PROPN
caryologia-232	384	23	j	j	PROPN
caryologia-232	384	24	,	,	PUNCT
caryologia-232	384	25	schackwitz	schackwitz	PROPN
caryologia-232	384	26	w	w	PROPN
caryologia-232	384	27	,	,	PUNCT
caryologia-232	384	28	muchero	muchero	PROPN
caryologia-232	384	29	w	w	PROPN
caryologia-232	384	30	,	,	PUNCT
caryologia-232	384	31	rodgers	rodgers	PROPN
caryologia-232	384	32	-	-	PUNCT
caryologia-232	384	33	melnick	melnick	PROPN
caryologia-232	384	34	e	e	PROPN
caryologia-232	384	35	,	,	PUNCT
caryologia-232	384	36	lipphardt	lipphardt	VERB
caryologia-232	384	37	mf	mf	VERB
caryologia-232	384	38	et	et	PROPN
caryologia-232	384	39	al	al	PROPN
caryologia-232	384	40	.	.	PROPN
caryologia-232	384	41	2012	2012	NUM
caryologia-232	384	42	.	.	PUNCT
caryologia-232	385	1	genome	genome	NOUN
caryologia-232	385	2	resequencing	resequencing	NOUN
caryologia-232	385	3	reveals	reveal	VERB
caryologia-232	385	4	multiscale	multiscale	ADJ
caryologia-232	385	5	geographic	geographic	ADJ
caryologia-232	385	6	structure	structure	NOUN
caryologia-232	385	7	and	and	CCONJ
caryologia-232	385	8	extensive	extensive	ADJ
caryologia-232	385	9	linkage	linkage	NOUN
caryologia-232	385	10	disequilibrium	disequilibrium	NOUN
caryologia-232	385	11	in	in	ADP
caryologia-232	385	12	the	the	DET
caryologia-232	385	13	forest	forest	NOUN
caryologia-232	385	14	tree	tree	NOUN
caryologia-232	385	15	populus	populus	PROPN
caryologia-232	385	16	trichocarpa	trichocarpa	NOUN
caryologia-232	385	17	.	.	PUNCT
caryologia-232	386	1	new	new	ADJ
caryologia-232	386	2	phytol	phytol	NOUN
caryologia-232	386	3	.	.	PUNCT
caryologia-232	387	1	196	196	NUM
caryologia-232	387	2	:	:	PUNCT
caryologia-232	388	1	713–725	713–725	NUM
caryologia-232	388	2	.	.	PUNCT
caryologia-232	389	1	slotkin	slotkin	ADJ
caryologia-232	389	2	rk	rk	NOUN
caryologia-232	389	3	,	,	PUNCT
caryologia-232	389	4	martienssen	martienssen	PROPN
caryologia-232	389	5	r.	r.	PROPN
caryologia-232	389	6	2007	2007	NUM
caryologia-232	389	7	.	.	PUNCT
caryologia-232	390	1	transposable	transposable	ADJ
caryologia-232	390	2	elements	element	NOUN
caryologia-232	390	3	and	and	CCONJ
caryologia-232	390	4	the	the	DET
caryologia-232	390	5	epigenetic	epigenetic	ADJ
caryologia-232	390	6	regulation	regulation	NOUN
caryologia-232	390	7	of	of	ADP
caryologia-232	390	8	the	the	DET
caryologia-232	390	9	genome	genome	NOUN
caryologia-232	390	10	.	.	PUNCT
caryologia-232	391	1	nat	nat	PROPN
caryologia-232	391	2	rev	rev	PROPN
caryologia-232	391	3	genet	genet	PROPN
caryologia-232	391	4	.	.	PUNCT
caryologia-232	392	1	8	8	NUM
caryologia-232	392	2	:	:	PUNCT
caryologia-232	392	3	272–285	272–285	NUM
caryologia-232	392	4	.	.	PUNCT
caryologia-232	392	5	sonnhammer	sonnhammer	PROPN
caryologia-232	392	6	el	el	PROPN
caryologia-232	392	7	,	,	PUNCT
caryologia-232	392	8	durbin	durbin	PROPN
caryologia-232	392	9	r.	r.	PROPN
caryologia-232	392	10	1995	1995	NUM
caryologia-232	392	11	.	.	PUNCT
caryologia-232	393	1	a	a	DET
caryologia-232	393	2	dot	dot	NOUN
caryologia-232	393	3	-	-	PUNCT
caryologia-232	393	4	matriprogram	matriprogram	NOUN
caryologia-232	393	5	with	with	ADP
caryologia-232	393	6	dynamic	dynamic	ADJ
caryologia-232	393	7	threshold	threshold	NOUN
caryologia-232	393	8	control	control	NOUN
caryologia-232	393	9	suited	suit	VERB
caryologia-232	393	10	for	for	ADP
caryologia-232	393	11	genomic	genomic	ADJ
caryologia-232	393	12	dna	dna	NOUN
caryologia-232	393	13	and	and	CCONJ
caryologia-232	393	14	protein	protein	NOUN
caryologia-232	393	15	sequence	sequence	NOUN
caryologia-232	393	16	analysis	analysis	NOUN
caryologia-232	393	17	.	.	PUNCT
caryologia-232	394	1	gene	gene	NOUN
caryologia-232	394	2	.	.	PUNCT
caryologia-232	395	1	167	167	NUM
caryologia-232	395	2	:	:	PUNCT
caryologia-232	395	3	gc1	gc1	PROPN
caryologia-232	395	4	–	–	PUNCT
caryologia-232	395	5	gc10	gc10	PROPN
caryologia-232	395	6	.	.	PUNCT
caryologia-232	396	1	springer	springer	PROPN
caryologia-232	396	2	nm	nm	PROPN
caryologia-232	396	3	,	,	PUNCT
caryologia-232	396	4	ying	ying	PROPN
caryologia-232	396	5	k	k	PROPN
caryologia-232	396	6	,	,	PUNCT
caryologia-232	396	7	fu	fu	PROPN
caryologia-232	396	8	y	y	PROPN
caryologia-232	396	9	,	,	PUNCT
caryologia-232	396	10	ji	ji	PROPN
caryologia-232	396	11	t	t	PROPN
caryologia-232	396	12	,	,	PUNCT
caryologia-232	396	13	yeh	yeh	PROPN
caryologia-232	396	14	ct	ct	PROPN
caryologia-232	396	15	,	,	PUNCT
caryologia-232	396	16	jia	jia	PROPN
caryologia-232	396	17	y	y	PROPN
caryologia-232	396	18	,	,	PUNCT
caryologia-232	396	19	et	et	PROPN
caryologia-232	396	20	al	al	PROPN
caryologia-232	396	21	.	.	PROPN
caryologia-232	396	22	2009	2009	NUM
caryologia-232	396	23	.	.	PUNCT
caryologia-232	397	1	maize	maize	NOUN
caryologia-232	397	2	inbreds	inbred	NOUN
caryologia-232	397	3	exhibit	exhibit	VERB
caryologia-232	397	4	high	high	ADJ
caryologia-232	397	5	levels	level	NOUN
caryologia-232	397	6	of	of	ADP
caryologia-232	397	7	copy	copy	NOUN
caryologia-232	397	8	number	number	NOUN
caryologia-232	397	9	variation	variation	NOUN
caryologia-232	397	10	(	(	PUNCT
caryologia-232	397	11	cnv	cnv	NOUN
caryologia-232	397	12	)	)	PUNCT
caryologia-232	397	13	and	and	CCONJ
caryologia-232	397	14	presence	presence	NOUN
caryologia-232	397	15	/	/	SYM
caryologia-232	397	16	absence	absence	NOUN
caryologia-232	397	17	variation	variation	NOUN
caryologia-232	397	18	(	(	PUNCT
caryologia-232	397	19	pav	pav	PROPN
caryologia-232	397	20	)	)	PUNCT
caryologia-232	397	21	in	in	ADP
caryologia-232	397	22	genome	genome	NOUN
caryologia-232	397	23	content	content	NOUN
caryologia-232	397	24	.	.	PUNCT
caryologia-232	398	1	plos	plos	PROPN
caryologia-232	398	2	genet	genet	PROPN
caryologia-232	398	3	.	.	PUNCT
caryologia-232	399	1	5	5	NUM
caryologia-232	399	2	:	:	PUNCT
caryologia-232	399	3	e1000734	e1000734	NUM
caryologia-232	399	4	.	.	PUNCT
caryologia-232	400	1	takeda	takeda	PROPN
caryologia-232	400	2	s	s	PROPN
caryologia-232	400	3	,	,	PUNCT
caryologia-232	400	4	sugimoto	sugimoto	PROPN
caryologia-232	400	5	k	k	PROPN
caryologia-232	400	6	,	,	PUNCT
caryologia-232	400	7	otsuki	otsuki	ADJ
caryologia-232	400	8	h	h	NOUN
caryologia-232	400	9	,	,	PUNCT
caryologia-232	400	10	hirochika	hirochika	NOUN
caryologia-232	400	11	h.	h.	PROPN
caryologia-232	400	12	1999	1999	NUM
caryologia-232	400	13	.	.	PUNCT
caryologia-232	401	1	a	a	DET
caryologia-232	401	2	13	13	NUM
caryologia-232	401	3	-	-	PUNCT
caryologia-232	401	4	bp	bp	NOUN
caryologia-232	401	5	cis	cis	NOUN
caryologia-232	401	6	-	-	PUNCT
caryologia-232	401	7	regulatory	regulatory	ADJ
caryologia-232	401	8	element	element	NOUN
caryologia-232	401	9	in	in	ADP
caryologia-232	401	10	the	the	DET
caryologia-232	401	11	ltr	ltr	ADJ
caryologia-232	401	12	promoter	promoter	NOUN
caryologia-232	401	13	of	of	ADP
caryologia-232	401	14	the	the	DET
caryologia-232	401	15	tobacco	tobacco	NOUN
caryologia-232	401	16	retrotransposon	retrotransposon	NOUN
caryologia-232	401	17	tto1	tto1	PROPN
caryologia-232	401	18	is	be	AUX
caryologia-232	401	19	involved	involve	VERB
caryologia-232	401	20	in	in	ADP
caryologia-232	401	21	responsiveness	responsiveness	NOUN
caryologia-232	401	22	to	to	ADP
caryologia-232	401	23	tissue	tissue	NOUN
caryologia-232	401	24	culture	culture	NOUN
caryologia-232	401	25	,	,	PUNCT
caryologia-232	401	26	wounding	wounding	NOUN
caryologia-232	401	27	,	,	PUNCT
caryologia-232	401	28	methyl	methyl	NOUN
caryologia-232	401	29	jasmonate	jasmonate	NOUN
caryologia-232	401	30	and	and	CCONJ
caryologia-232	401	31	fungal	fungal	ADJ
caryologia-232	401	32	elicitors	elicitor	NOUN
caryologia-232	401	33	.	.	PUNCT
caryologia-232	402	1	plant	plant	NOUN
caryologia-232	402	2	j.	j.	PROPN
caryologia-232	402	3	18	18	NUM
caryologia-232	402	4	:	:	PUNCT
caryologia-232	402	5	383–393	383–393	NUM
caryologia-232	402	6	.	.	PUNCT
caryologia-232	403	1	tuskan	tuskan	PROPN
caryologia-232	403	2	ga	ga	PROPN
caryologia-232	403	3	,	,	PUNCT
caryologia-232	403	4	difazio	difazio	VERB
caryologia-232	403	5	s	s	PART
caryologia-232	403	6	,	,	PUNCT
caryologia-232	403	7	jansson	jansson	PROPN
caryologia-232	403	8	s	s	PROPN
caryologia-232	403	9	,	,	PUNCT
caryologia-232	403	10	bohlmann	bohlmann	PROPN
caryologia-232	403	11	j	j	PROPN
caryologia-232	403	12	,	,	PUNCT
caryologia-232	403	13	grigoriev	grigoriev	PROPN
caryologia-232	403	14	i	i	PROPN
caryologia-232	403	15	,	,	PUNCT
caryologia-232	403	16	hellsten	hellsten	PROPN
caryologia-232	403	17	u	u	NOUN
caryologia-232	403	18	,	,	PUNCT
caryologia-232	403	19	putnam	putnam	PROPN
caryologia-232	403	20	n	n	CCONJ
caryologia-232	403	21	,	,	PUNCT
caryologia-232	403	22	ralph	ralph	PROPN
caryologia-232	403	23	s	s	PROPN
caryologia-232	403	24	,	,	PUNCT
caryologia-232	403	25	rombauts	rombauts	PROPN
caryologia-232	403	26	s	s	PART
caryologia-232	403	27	,	,	PUNCT
caryologia-232	403	28	salamov	salamov	VERB
caryologia-232	403	29	a	a	PRON
caryologia-232	403	30	,	,	PUNCT
caryologia-232	403	31	schein	schein	PROPN
caryologia-232	403	32	j	j	PROPN
caryologia-232	403	33	,	,	PUNCT
caryologia-232	403	34	sterck	sterck	PROPN
caryologia-232	403	35	l	l	PROPN
caryologia-232	403	36	,	,	PUNCT
caryologia-232	403	37	aerts	aert	VERB
caryologia-232	403	38	a	a	PRON
caryologia-232	403	39	,	,	PUNCT
caryologia-232	403	40	bhalerao	bhalerao	PROPN
caryologia-232	403	41	rr	rr	PROPN
caryologia-232	403	42	,	,	PUNCT
caryologia-232	403	43	bhalerao	bhalerao	NOUN
caryologia-232	403	44	rp	rp	NOUN
caryologia-232	403	45	,	,	PUNCT
caryologia-232	403	46	blaudez	blaudez	PROPN
caryologia-232	403	47	d	d	PROPN
caryologia-232	403	48	,	,	PUNCT
caryologia-232	403	49	boerjan	boerjan	NOUN
caryologia-232	403	50	w	w	PROPN
caryologia-232	403	51	,	,	PUNCT
caryologia-232	403	52	brun	brun	NOUN
caryologia-232	403	53	a	a	PRON
caryologia-232	403	54	,	,	PUNCT
caryologia-232	403	55	brunner	brunner	PROPN
caryologia-232	403	56	a	a	NOUN
caryologia-232	403	57	,	,	PUNCT
caryologia-232	403	58	busov	busov	NOUN
caryologia-232	403	59	v	v	NOUN
caryologia-232	403	60	,	,	PUNCT
caryologia-232	403	61	campbell	campbell	PROPN
caryologia-232	403	62	m	m	PROPN
caryologia-232	403	63	,	,	PUNCT
caryologia-232	403	64	carlson	carlson	PROPN
caryologia-232	403	65	j	j	PROPN
caryologia-232	403	66	,	,	PUNCT
caryologia-232	403	67	chalot	chalot	PROPN
caryologia-232	403	68	m	m	PROPN
caryologia-232	403	69	,	,	PUNCT
caryologia-232	403	70	chapman	chapman	PROPN
caryologia-232	403	71	j	j	PROPN
caryologia-232	403	72	,	,	PUNCT
caryologia-232	403	73	chen	chen	PROPN
caryologia-232	403	74	gl	gl	PROPN
caryologia-232	403	75	,	,	PUNCT
caryologia-232	403	76	cooper	cooper	PROPN
caryologia-232	403	77	d	d	PROPN
caryologia-232	403	78	,	,	PUNCT
caryologia-232	403	79	coutinho	coutinho	PROPN
caryologia-232	403	80	pm	pm	PROPN
caryologia-232	403	81	,	,	PUNCT
caryologia-232	403	82	couturier	couturier	PROPN
caryologia-232	403	83	j	j	PROPN
caryologia-232	403	84	,	,	PUNCT
caryologia-232	403	85	covert	covert	PROPN
caryologia-232	403	86	s	s	PROPN
caryologia-232	403	87	,	,	PUNCT
caryologia-232	403	88	cronk	cronk	PROPN
caryologia-232	403	89	q	q	PROPN
caryologia-232	403	90	,	,	PUNCT
caryologia-232	403	91	cunningham	cunningham	PROPN
caryologia-232	403	92	r	r	PROPN
caryologia-232	403	93	,	,	PUNCT
caryologia-232	403	94	davis	davis	PROPN
caryologia-232	403	95	j	j	PROPN
caryologia-232	403	96	,	,	PUNCT
caryologia-232	403	97	degroeve	degroeve	PROPN
caryologia-232	403	98	s	s	PART
caryologia-232	403	99	,	,	PUNCT
caryologia-232	403	100	déjardin	déjardin	VERB
caryologia-232	403	101	a	a	DET
caryologia-232	403	102	,	,	PUNCT
caryologia-232	403	103	depamphilis	depamphilis	PROPN
caryologia-232	403	104	c	c	NOUN
caryologia-232	403	105	,	,	PUNCT
caryologia-232	403	106	detter	detter	PROPN
caryologia-232	403	107	j	j	PROPN
caryologia-232	403	108	,	,	PUNCT
caryologia-232	403	109	dirks	dirks	PROPN
caryologia-232	403	110	b	b	PROPN
caryologia-232	403	111	,	,	PUNCT
caryologia-232	403	112	dubchak	dubchak	NOUN
caryologia-232	403	113	i	i	PRON
caryologia-232	403	114	,	,	PUNCT
caryologia-232	403	115	duplessis	duplessis	NOUN
caryologia-232	403	116	s	s	PROPN
caryologia-232	403	117	,	,	PUNCT
caryologia-232	403	118	ehlting	ehlte	VERB
caryologia-232	403	119	j	j	PROPN
caryologia-232	403	120	,	,	PUNCT
caryologia-232	403	121	ellis	ellis	PROPN
caryologia-232	403	122	b	b	PROPN
caryologia-232	403	123	,	,	PUNCT
caryologia-232	403	124	gendler	gendler	NOUN
caryologia-232	403	125	k	k	PROPN
caryologia-232	403	126	,	,	PUNCT
caryologia-232	403	127	goodstein	goodstein	PRON
caryologia-232	403	128	d	d	NOUN
caryologia-232	403	129	,	,	PUNCT
caryologia-232	403	130	gribskov	gribskov	NOUN
caryologia-232	403	131	m	m	PROPN
caryologia-232	403	132	,	,	PUNCT
caryologia-232	403	133	grimwood	grimwood	PROPN
caryologia-232	403	134	j	j	PROPN
caryologia-232	403	135	,	,	PUNCT
caryologia-232	403	136	groover	groover	PROPN
caryologia-232	403	137	a	a	X
caryologia-232	403	138	,	,	PUNCT
caryologia-232	403	139	gunter	gunter	NOUN
caryologia-232	403	140	l	l	PROPN
caryologia-232	403	141	,	,	PUNCT
caryologia-232	403	142	hamberger	hamberger	NOUN
caryologia-232	403	143	b	b	PROPN
caryologia-232	403	144	,	,	PUNCT
caryologia-232	403	145	heinze	heinze	PROPN
caryologia-232	403	146	b	b	PROPN
caryologia-232	403	147	,	,	PUNCT
caryologia-232	403	148	helariutta	helariutta	PROPN
caryologia-232	403	149	y	y	PROPN
caryologia-232	403	150	,	,	PUNCT
caryologia-232	403	151	et	et	PROPN
caryologia-232	403	152	al	al	PROPN
caryologia-232	403	153	.	.	PROPN
caryologia-232	403	154	2006	2006	NUM
caryologia-232	403	155	.	.	PUNCT
caryologia-232	404	1	the	the	DET
caryologia-232	404	2	genome	genome	NOUN
caryologia-232	404	3	of	of	ADP
caryologia-232	404	4	black	black	ADJ
caryologia-232	404	5	cottonwood	cottonwood	PROPN
caryologia-232	404	6	,	,	PUNCT
caryologia-232	404	7	populus	populus	PROPN
caryologia-232	404	8	trichocarpa	trichocarpa	NOUN
caryologia-232	404	9	(	(	PUNCT
caryologia-232	404	10	torr	torr	PROPN
caryologia-232	404	11	.	.	PROPN
caryologia-232	404	12	&	&	CCONJ
caryologia-232	404	13	gray	gray	ADJ
caryologia-232	404	14	)	)	PUNCT
caryologia-232	404	15	.	.	PUNCT
caryologia-232	405	1	science	science	NOUN
caryologia-232	405	2	.	.	PUNCT
caryologia-232	406	1	313	313	NUM
caryologia-232	406	2	:	:	PUNCT
caryologia-232	406	3	1596	1596	NUM
caryologia-232	406	4	-	-	SYM
caryologia-232	406	5	1604	1604	NUM
caryologia-232	406	6	.	.	PUNCT
caryologia-232	407	1	usai	usai	VERB
caryologia-232	407	2	g	g	PROPN
caryologia-232	407	3	,	,	PUNCT
caryologia-232	407	4	mascagni	mascagni	NOUN
caryologia-232	407	5	f	f	PROPN
caryologia-232	407	6	,	,	PUNCT
caryologia-232	407	7	natali	natali	PROPN
caryologia-232	407	8	l	l	NOUN
caryologia-232	407	9	,	,	PUNCT
caryologia-232	407	10	giordani	giordani	PROPN
caryologia-232	407	11	t	t	PROPN
caryologia-232	407	12	,	,	PUNCT
caryologia-232	407	13	cavallini	cavallini	PROPN
caryologia-232	407	14	a.	a.	NOUN
caryologia-232	407	15	2017	2017	NUM
caryologia-232	407	16	.	.	PUNCT
caryologia-232	408	1	comparative	comparative	ADJ
caryologia-232	408	2	genome	genome	NOUN
caryologia-232	408	3	-	-	PUNCT
caryologia-232	408	4	wide	wide	ADJ
caryologia-232	408	5	analysis	analysis	NOUN
caryologia-232	408	6	of	of	ADP
caryologia-232	408	7	repetitive	repetitive	ADJ
caryologia-232	408	8	dna	dna	NOUN
caryologia-232	408	9	in	in	ADP
caryologia-232	408	10	the	the	DET
caryologia-232	408	11	genus	genus	ADJ
caryologia-232	408	12	populus	populus	PROPN
caryologia-232	408	13	l.	l.	PROPN
caryologia-232	408	14	tree	tree	PROPN
caryologia-232	408	15	genet	genet	NOUN
caryologia-232	408	16	genomes	genome	NOUN
caryologia-232	408	17	.	.	PUNCT
caryologia-232	409	1	13	13	NUM
caryologia-232	409	2	:	:	SYM
caryologia-232	409	3	96	96	NUM
caryologia-232	409	4	.	.	PUNCT
caryologia-232	410	1	vangelisti	vangelisti	PROPN
caryologia-232	410	2	a	a	PRON
caryologia-232	410	3	,	,	PUNCT
caryologia-232	410	4	mascagni	mascagni	NOUN
caryologia-232	410	5	f	f	PROPN
caryologia-232	410	6	,	,	PUNCT
caryologia-232	410	7	giordani	giordani	PROPN
caryologia-232	410	8	t	t	PROPN
caryologia-232	410	9	,	,	PUNCT
caryologia-232	410	10	sbrana	sbrana	NOUN
caryologia-232	410	11	c	c	NOUN
caryologia-232	410	12	,	,	PUNCT
caryologia-232	410	13	turrini	turrini	ADV
caryologia-232	410	14	a	a	X
caryologia-232	410	15	,	,	PUNCT
caryologia-232	410	16	cavallini	cavallini	VERB
caryologia-232	410	17	a	a	PRON
caryologia-232	410	18	,	,	PUNCT
caryologia-232	410	19	giovannetti	giovannetti	NOUN
caryologia-232	410	20	m	m	PROPN
caryologia-232	410	21	,	,	PUNCT
caryologia-232	410	22	natali	natali	PROPN
caryologia-232	410	23	l.	l.	PROPN
caryologia-232	410	24	2019	2019	NUM
caryologia-232	410	25	.	.	PUNCT
caryologia-232	411	1	arbuscular	arbuscular	ADJ
caryologia-232	411	2	mycorrhizal	mycorrhizal	NOUN
caryologia-232	411	3	fungi	fungus	NOUN
caryologia-232	411	4	induce	induce	VERB
caryologia-232	411	5	the	the	DET
caryologia-232	411	6	expression	expression	NOUN
caryologia-232	411	7	of	of	ADP
caryologia-232	411	8	specific	specific	ADJ
caryologia-232	411	9	retrotransposons	retrotransposon	NOUN
caryologia-232	411	10	in	in	ADP
caryologia-232	411	11	roots	root	NOUN
caryologia-232	411	12	of	of	ADP
caryologia-232	411	13	sunflower	sunflower	NOUN
caryologia-232	411	14	(	(	PUNCT
caryologia-232	411	15	helianthus	helianthus	PROPN
caryologia-232	411	16	annuus	annuus	NOUN
caryologia-232	411	17	l.	l.	PROPN
caryologia-232	411	18	)	)	PUNCT
caryologia-232	411	19	.	.	PUNCT
caryologia-232	412	1	plos	plos	PROPN
caryologia-232	412	2	one	one	NUM
caryologia-232	412	3	.	.	PUNCT
caryologia-232	413	1	14	14	NUM
caryologia-232	413	2	:	:	PUNCT
caryologia-232	413	3	e0212371	e0212371	PROPN
caryologia-232	413	4	.	.	PROPN
caryologia-232	413	5	vicient	vicient	PROPN
caryologia-232	413	6	cm	cm	PROPN
caryologia-232	413	7	,	,	PUNCT
caryologia-232	413	8	suoniemi	suoniemi	NOUN
caryologia-232	413	9	a	a	PRON
caryologia-232	413	10	,	,	PUNCT
caryologia-232	413	11	anamthawat	anamthawat	PROPN
caryologia-232	413	12	-	-	PUNCT
caryologia-232	413	13	jonsson	jonsson	PROPN
caryologia-232	413	14	k	k	PROPN
caryologia-232	413	15	,	,	PUNCT
caryologia-232	413	16	tanskanen	tanskanen	PROPN
caryologia-232	413	17	j	j	PROPN
caryologia-232	413	18	,	,	PUNCT
caryologia-232	413	19	beharav	beharav	VERB
caryologia-232	413	20	a	a	PRON
caryologia-232	413	21	,	,	PUNCT
caryologia-232	413	22	nevo	nevo	PROPN
caryologia-232	413	23	e	e	PROPN
caryologia-232	413	24	,	,	PUNCT
caryologia-232	413	25	schulman	schulman	NOUN
caryologia-232	413	26	ah	ah	INTJ
caryologia-232	413	27	.	.	PUNCT
caryologia-232	413	28	1999	1999	NUM
caryologia-232	413	29	.	.	PUNCT
caryologia-232	414	1	retrotransposon	retrotransposon	PROPN
caryologia-232	414	2	bare-1	bare-1	PROPN
caryologia-232	414	3	and	and	CCONJ
caryologia-232	414	4	its	its	PRON
caryologia-232	414	5	role	role	NOUN
caryologia-232	414	6	in	in	ADP
caryologia-232	414	7	genome	genome	NOUN
caryologia-232	414	8	evolution	evolution	NOUN
caryologia-232	414	9	in	in	ADP
caryologia-232	414	10	the	the	DET
caryologia-232	414	11	genus	genus	ADJ
caryologia-232	414	12	hordeum	hordeum	NOUN
caryologia-232	414	13	.	.	PUNCT
caryologia-232	415	1	plant	plant	NOUN
caryologia-232	415	2	cell	cell	NOUN
caryologia-232	415	3	.	.	PUNCT
caryologia-232	416	1	11	11	NUM
caryologia-232	416	2	:	:	SYM
caryologia-232	416	3	1769	1769	NUM
caryologia-232	416	4	–	–	PUNCT
caryologia-232	416	5	1784	1784	NUM
caryologia-232	416	6	.	.	PUNCT
caryologia-232	417	1	vicient	vicient	PROPN
caryologia-232	417	2	cm	cm	PROPN
caryologia-232	417	3	,	,	PUNCT
caryologia-232	417	4	jaaskelainen	jaaskelainen	PROPN
caryologia-232	417	5	mj	mj	PROPN
caryologia-232	417	6	,	,	PUNCT
caryologia-232	417	7	kalendar	kalendar	PROPN
caryologia-232	417	8	r	r	NOUN
caryologia-232	417	9	,	,	PUNCT
caryologia-232	417	10	schulman	schulman	NOUN
caryologia-232	417	11	ah	ah	INTJ
caryologia-232	417	12	.	.	PUNCT
caryologia-232	418	1	2001	2001	NUM
caryologia-232	418	2	.	.	PUNCT
caryologia-232	419	1	active	active	ADJ
caryologia-232	419	2	retrotransposons	retrotransposon	NOUN
caryologia-232	419	3	are	be	AUX
caryologia-232	419	4	a	a	DET
caryologia-232	419	5	common	common	ADJ
caryologia-232	419	6	feature	feature	NOUN
caryologia-232	419	7	of	of	ADP
caryologia-232	419	8	grass	grass	NOUN
caryologia-232	419	9	genomes	genome	NOUN
caryologia-232	419	10	.	.	PUNCT
caryologia-232	420	1	plant	plant	NOUN
caryologia-232	420	2	physiol	physiol	NOUN
caryologia-232	420	3	.	.	PUNCT
caryologia-232	421	1	125	125	NUM
caryologia-232	421	2	:	:	SYM
caryologia-232	421	3	1283–1292	1283–1292	NUM
caryologia-232	421	4	.	.	PUNCT
caryologia-232	422	1	vitte	vitte	PROPN
caryologia-232	422	2	c	c	PROPN
caryologia-232	422	3	,	,	PUNCT
caryologia-232	422	4	fustier	fustier	PROPN
caryologia-232	422	5	ma	ma	PROPN
caryologia-232	422	6	,	,	PUNCT
caryologia-232	422	7	alix	alix	PROPN
caryologia-232	422	8	k	k	PROPN
caryologia-232	422	9	,	,	PUNCT
caryologia-232	422	10	tenaillon	tenaillon	PROPN
caryologia-232	422	11	mi	mi	PROPN
caryologia-232	422	12	.	.	PROPN
caryologia-232	422	13	2014	2014	NUM
caryologia-232	422	14	.	.	PUNCT
caryologia-232	423	1	the	the	DET
caryologia-232	423	2	bright	bright	ADJ
caryologia-232	423	3	side	side	NOUN
caryologia-232	423	4	of	of	ADP
caryologia-232	423	5	transposons	transposon	NOUN
caryologia-232	423	6	in	in	ADP
caryologia-232	423	7	crop	crop	NOUN
caryologia-232	423	8	evolution	evolution	NOUN
caryologia-232	423	9	.	.	PUNCT
caryologia-232	424	1	briefings	briefing	NOUN
caryologia-232	424	2	funct	funct	PROPN
caryologia-232	424	3	genom	genom	NOUN
caryologia-232	424	4	.	.	PUNCT
caryologia-232	425	1	13	13	NUM
caryologia-232	425	2	:	:	PUNCT
caryologia-232	425	3	276	276	NUM
caryologia-232	425	4	-	-	SYM
caryologia-232	425	5	295	295	NUM
caryologia-232	425	6	.	.	PUNCT
caryologia-232	426	1	voronova	voronova	VERB
caryologia-232	426	2	a	a	PRON
caryologia-232	426	3	,	,	PUNCT
caryologia-232	426	4	belevich	belevich	ADJ
caryologia-232	426	5	v	v	ADP
caryologia-232	426	6	,	,	PUNCT
caryologia-232	426	7	rungis	rungis	ADJ
caryologia-232	426	8	d	d	PROPN
caryologia-232	426	9	,	,	PUNCT
caryologia-232	426	10	jansons	janson	NOUN
caryologia-232	426	11	a.	a.	NOUN
caryologia-232	426	12	2014	2014	NUM
caryologia-232	426	13	.	.	PUNCT
caryologia-232	427	1	stress	stress	NOUN
caryologia-232	427	2	-	-	PUNCT
caryologia-232	427	3	induced	induce	VERB
caryologia-232	427	4	transcriptional	transcriptional	ADJ
caryologia-232	427	5	activation	activation	NOUN
caryologia-232	427	6	of	of	ADP
caryologia-232	427	7	retrotransposon	retrotransposon	NOUN
caryologia-232	427	8	-	-	PUNCT
caryologia-232	427	9	like	like	ADJ
caryologia-232	427	10	sequences	sequence	NOUN
caryologia-232	427	11	in	in	ADP
caryologia-232	427	12	the	the	DET
caryologia-232	427	13	scots	scot	NOUN
caryologia-232	427	14	pine	pine	NOUN
caryologia-232	427	15	(	(	PUNCT
caryologia-232	427	16	pinus	pinus	NOUN
caryologia-232	427	17	sylvestris	sylvestris	NOUN
caryologia-232	427	18	l.	l.	PROPN
caryologia-232	427	19	)	)	PUNCT
caryologia-232	427	20	genome	genome	NOUN
caryologia-232	427	21	.	.	PUNCT
caryologia-232	428	1	tree	tree	NOUN
caryologia-232	428	2	genet	genet	NOUN
caryologia-232	428	3	genomes	genome	NOUN
caryologia-232	428	4	.	.	PUNCT
caryologia-232	429	1	10	10	NUM
caryologia-232	429	2	:	:	PUNCT
caryologia-232	429	3	937–951	937–951	NUM
caryologia-232	429	4	.	.	PUNCT
caryologia-232	430	1	vukich	vukich	PROPN
caryologia-232	430	2	m	m	PROPN
caryologia-232	430	3	,	,	PUNCT
caryologia-232	430	4	giordani	giordani	PROPN
caryologia-232	430	5	t	t	PROPN
caryologia-232	430	6	,	,	PUNCT
caryologia-232	430	7	natali	natali	PROPN
caryologia-232	430	8	l	l	NOUN
caryologia-232	430	9	,	,	PUNCT
caryologia-232	430	10	cavallini	cavallini	VERB
caryologia-232	430	11	a.	a.	NOUN
caryologia-232	430	12	2009	2009	NUM
caryologia-232	430	13	.	.	PUNCT
caryologia-232	431	1	copia	copia	PROPN
caryologia-232	431	2	and	and	CCONJ
caryologia-232	431	3	gypsy	gypsy	NOUN
caryologia-232	431	4	retrotransposons	retrotransposon	NOUN
caryologia-232	431	5	activity	activity	NOUN
caryologia-232	431	6	in	in	ADP
caryologia-232	431	7	sunflower	sunflower	NOUN
caryologia-232	431	8	(	(	PUNCT
caryologia-232	431	9	helianthus	helianthus	PROPN
caryologia-232	431	10	annuus	annuus	NOUN
caryologia-232	431	11	l.	l.	PROPN
caryologia-232	431	12	)	)	PUNCT
caryologia-232	431	13	.	.	PUNCT
caryologia-232	432	1	bmc	bmc	ADJ
caryologia-232	432	2	plant	plant	NOUN
caryologia-232	432	3	biol	biol	NOUN
caryologia-232	432	4	.	.	PUNCT
caryologia-232	433	1	9	9	NUM
caryologia-232	433	2	:	:	SYM
caryologia-232	433	3	150	150	NUM
caryologia-232	433	4	.	.	PUNCT
caryologia-232	434	1	wicker	wicker	PROPN
caryologia-232	434	2	t	t	PROPN
caryologia-232	434	3	,	,	PUNCT
caryologia-232	434	4	sabot	sabot	NOUN
caryologia-232	434	5	f	f	PROPN
caryologia-232	434	6	,	,	PUNCT
caryologia-232	434	7	hua	hua	PROPN
caryologia-232	434	8	-	-	PROPN
caryologia-232	434	9	van	van	PROPN
caryologia-232	434	10	a	a	NOUN
caryologia-232	434	11	,	,	PUNCT
caryologia-232	434	12	bennetzen	bennetzen	NOUN
caryologia-232	434	13	jl	jl	NOUN
caryologia-232	434	14	,	,	PUNCT
caryologia-232	434	15	capy	capy	PROPN
caryologia-232	434	16	p	p	PROPN
caryologia-232	434	17	,	,	PUNCT
caryologia-232	434	18	chalhoub	chalhoub	PROPN
caryologia-232	434	19	b	b	PROPN
caryologia-232	434	20	,	,	PUNCT
caryologia-232	434	21	flavell	flavell	NOUN
caryologia-232	434	22	a	a	X
caryologia-232	434	23	,	,	PUNCT
caryologia-232	434	24	leroy	leroy	PROPN
caryologia-232	434	25	p	p	X
caryologia-232	434	26	,	,	PUNCT
caryologia-232	434	27	morgante	morgante	PROPN
caryologia-232	434	28	m	m	PROPN
caryologia-232	434	29	,	,	PUNCT
caryologia-232	434	30	panaud	panaud	ADJ
caryologia-232	434	31	o	o	NOUN
caryologia-232	434	32	,	,	PUNCT
caryologia-232	434	33	paux	paux	PROPN
caryologia-232	434	34	e	e	PROPN
caryologia-232	434	35	,	,	PUNCT
caryologia-232	434	36	sanmiguel	sanmiguel	NOUN
caryologia-232	434	37	p	p	PROPN
caryologia-232	434	38	,	,	PUNCT
caryologia-232	434	39	schulman	schulman	NOUN
caryologia-232	434	40	ah	ah	INTJ
caryologia-232	434	41	.	.	PUNCT
caryologia-232	434	42	2007	2007	NUM
caryologia-232	434	43	.	.	PUNCT
caryologia-232	435	1	a	a	DET
caryologia-232	435	2	unified	unified	ADJ
caryologia-232	435	3	classification	classification	NOUN
caryologia-232	435	4	systemfor	systemfor	ADP
caryologia-232	435	5	eukaryotic	eukaryotic	ADJ
caryologia-232	435	6	transposable	transposable	ADJ
caryologia-232	435	7	elements	element	NOUN
caryologia-232	435	8	.	.	PUNCT
caryologia-232	436	1	nature	nature	PROPN
caryologia-232	436	2	rev	rev	PROPN
caryologia-232	436	3	genet	genet	PROPN
caryologia-232	436	4	.	.	PUNCT
caryologia-232	437	1	8	8	NUM
caryologia-232	437	2	:	:	PUNCT
caryologia-232	437	3	973–982	973–982	NUM
caryologia-232	437	4	.	.	PUNCT
caryologia-232	438	1	xu	xu	PROPN
caryologia-232	439	1	z	z	PROPN
caryologia-232	439	2	,	,	PUNCT
caryologia-232	439	3	wang	wang	PROPN
caryologia-232	439	4	h.	h.	PROPN
caryologia-232	439	5	2007	2007	NUM
caryologia-232	439	6	.	.	PUNCT
caryologia-232	440	1	ltr_finder	ltr_finder	NOUN
caryologia-232	440	2	:	:	PUNCT
caryologia-232	440	3	an	an	DET
caryologia-232	440	4	efficient	efficient	ADJ
caryologia-232	440	5	tool	tool	NOUN
caryologia-232	440	6	for	for	ADP
caryologia-232	440	7	the	the	DET
caryologia-232	440	8	prediction	prediction	NOUN
caryologia-232	440	9	of	of	ADP
caryologia-232	440	10	full	full	ADJ
caryologia-232	440	11	-	-	PUNCT
caryologia-232	440	12	length	length	NOUN
caryologia-232	440	13	ltr	ltr	NOUN
caryologia-232	440	14	retrotransposons	retrotransposon	NOUN
caryologia-232	440	15	.	.	PUNCT
caryologia-232	441	1	nucleic	nucleic	ADJ
caryologia-232	441	2	acids	acid	NOUN
caryologia-232	441	3	res	re	NOUN
caryologia-232	441	4	.	.	PUNCT
caryologia-232	442	1	35	35	NUM
caryologia-232	442	2	:	:	PUNCT
caryologia-232	442	3	w265	w265	NUM
caryologia-232	442	4	–	–	PUNCT
caryologia-232	442	5	w268	w268	PROPN
caryologia-232	442	6	.	.	PUNCT
caryologia-232	443	1	yamazaki	yamazaki	PROPN
caryologia-232	443	2	m	m	PROPN
caryologia-232	443	3	,	,	PUNCT
caryologia-232	443	4	tsugawa	tsugawa	PROPN
caryologia-232	443	5	h	h	NOUN
caryologia-232	443	6	,	,	PUNCT
caryologia-232	443	7	miyao	miyao	PROPN
caryologia-232	443	8	a	a	PRON
caryologia-232	443	9	,	,	PUNCT
caryologia-232	443	10	yano	yano	PROPN
caryologia-232	443	11	m	m	PROPN
caryologia-232	443	12	,	,	PUNCT
caryologia-232	443	13	wu	wu	PROPN
caryologia-232	443	14	j	j	PROPN
caryologia-232	443	15	,	,	PUNCT
caryologia-232	443	16	yamamoto	yamamoto	PROPN
caryologia-232	443	17	s	s	PROPN
caryologia-232	443	18	,	,	PUNCT
caryologia-232	443	19	et	et	PROPN
caryologia-232	443	20	al	al	PROPN
caryologia-232	443	21	.	.	PROPN
caryologia-232	443	22	2001	2001	NUM
caryologia-232	443	23	.	.	PUNCT
caryologia-232	444	1	the	the	DET
caryologia-232	444	2	rice	rice	NOUN
caryologia-232	444	3	retrotransposon	retrotransposon	NOUN
caryologia-232	444	4	tos17	tos17	PROPN
caryologia-232	444	5	prefers	prefer	VERB
caryologia-232	444	6	low	low	ADJ
caryologia-232	444	7	-	-	PUNCT
caryologia-232	444	8	copy	copy	NOUN
caryologia-232	444	9	-	-	PUNCT
caryologia-232	444	10	number	number	NOUN
caryologia-232	444	11	sequences	sequence	NOUN
caryologia-232	444	12	as	as	ADP
caryologia-232	444	13	integration	integration	NOUN
caryologia-232	444	14	targets	target	NOUN
caryologia-232	444	15	.	.	PUNCT
caryologia-232	445	1	mol	mol	ADP
caryologia-232	445	2	genet	genet	NOUN
caryologia-232	445	3	genomics	genomic	NOUN
caryologia-232	445	4	.	.	PUNCT
caryologia-232	446	1	265	265	NUM
caryologia-232	446	2	:	:	PUNCT
caryologia-232	446	3	336–344	336–344	NUM
caryologia-232	446	4	.	.	PUNCT
caryologia-232	447	1	zeng	zeng	PROPN
caryologia-232	447	2	l	l	PROPN
caryologia-232	447	3	,	,	PUNCT
caryologia-232	447	4	zhang	zhang	PROPN
caryologia-232	447	5	n	n	PROPN
caryologia-232	447	6	,	,	PUNCT
caryologia-232	447	7	zhang	zhang	PROPN
caryologia-232	447	8	q	q	ADJ
caryologia-232	447	9	,	,	PUNCT
caryologia-232	447	10	endress	endress	ADJ
caryologia-232	447	11	pk	pk	NOUN
caryologia-232	447	12	,	,	PUNCT
caryologia-232	447	13	huang	huang	PROPN
caryologia-232	447	14	j	j	PROPN
caryologia-232	447	15	,	,	PUNCT
caryologia-232	447	16	ma	ma	PROPN
caryologia-232	447	17	h.	h.	PROPN
caryologia-232	447	18	2017	2017	NUM
caryologia-232	447	19	.	.	PUNCT
caryologia-232	448	1	resolution	resolution	NOUN
caryologia-232	448	2	of	of	ADP
caryologia-232	448	3	deep	deep	ADJ
caryologia-232	448	4	eudicot	eudicot	NOUN
caryologia-232	448	5	phylogeny	phylogeny	NOUN
caryologia-232	448	6	and	and	CCONJ
caryologia-232	448	7	their	their	PRON
caryologia-232	448	8	temporal	temporal	ADJ
caryologia-232	448	9	diversification	diversification	NOUN
caryologia-232	448	10	using	use	VERB
caryologia-232	448	11	nuclear	nuclear	ADJ
caryologia-232	448	12	genes	gene	NOUN
caryologia-232	448	13	from	from	ADP
caryologia-232	448	14	transcriptomic	transcriptomic	ADJ
caryologia-232	448	15	and	and	CCONJ
caryologia-232	448	16	genomic	genomic	ADJ
caryologia-232	448	17	datasets	dataset	NOUN
caryologia-232	448	18	.	.	PUNCT
caryologia-232	449	1	new	new	ADJ
caryologia-232	449	2	phytol	phytol	NOUN
caryologia-232	449	3	.	.	PUNCT
caryologia-232	450	1	214	214	NUM
caryologia-232	450	2	:	:	PUNCT
caryologia-232	450	3	1338	1338	NUM
caryologia-232	450	4	-	-	SYM
caryologia-232	450	5	1354	1354	NUM
caryologia-232	450	6	.	.	PUNCT
caryologia-232	451	1	caryologia	caryologia	ADJ
caryologia-232	451	2	international	international	PROPN
caryologia-232	451	3	journal	journal	PROPN
caryologia-232	451	4	of	of	ADP
caryologia-232	451	5	cytology	cytology	PROPN
caryologia-232	451	6	,	,	PUNCT
caryologia-232	451	7	cytosystematics	cytosystematic	NOUN
caryologia-232	451	8	and	and	CCONJ
caryologia-232	451	9	cytogenetics	cytogenetic	NOUN
caryologia-232	451	10	volume	volume	NOUN
caryologia-232	451	11	72	72	NUM
caryologia-232	451	12	,	,	PUNCT
caryologia-232	451	13	issue	issue	NOUN
caryologia-232	451	14	2	2	NUM
caryologia-232	451	15	2019	2019	NUM
caryologia-232	451	16	firenze	firenze	NOUN
caryologia-232	451	17	university	university	NOUN
caryologia-232	451	18	press	press	NOUN
caryologia-232	451	19	karyotype	karyotype	NOUN
caryologia-232	451	20	analysis	analysis	NOUN
caryologia-232	451	21	of	of	ADP
caryologia-232	451	22	a	a	DET
caryologia-232	451	23	natural	natural	ADJ
caryologia-232	451	24	lycoris	lycoris	ADJ
caryologia-232	451	25	double	double	ADJ
caryologia-232	451	26	-	-	PUNCT
caryologia-232	451	27	flowered	flower	VERB
caryologia-232	451	28	hybrid	hybrid	ADJ
caryologia-232	451	29	jin	jin	PROPN
caryologia-232	451	30	-	-	PUNCT
caryologia-232	451	31	xia	xia	PROPN
caryologia-232	451	32	wang1	wang1	PROPN
caryologia-232	451	33	,	,	PUNCT
caryologia-232	451	34	yuan	yuan	NOUN
caryologia-232	451	35	-	-	PUNCT
caryologia-232	451	36	jin	jin	PROPN
caryologia-232	451	37	cao1	cao1	PROPN
caryologia-232	451	38	,	,	PUNCT
caryologia-232	451	39	yu	yu	PROPN
caryologia-232	451	40	-	-	PUNCT
caryologia-232	451	41	chun	chun	PROPN
caryologia-232	451	42	han1	han1	PROPN
caryologia-232	451	43	,	,	PUNCT
caryologia-232	451	44	shou	shou	PROPN
caryologia-232	451	45	-	-	PUNCT
caryologia-232	451	46	biao	biao	PROPN
caryologia-232	451	47	zhou1,2	zhou1,2	PROPN
caryologia-232	451	48	,	,	PUNCT
caryologia-232	451	49	kun	kun	PROPN
caryologia-232	451	50	liu1	liu1	PROPN
caryologia-232	451	51	,	,	PUNCT
caryologia-232	451	52	*	*	VERB
caryologia-232	451	53	insights	insight	NOUN
caryologia-232	451	54	on	on	ADP
caryologia-232	451	55	cytogenetic	cytogenetic	ADJ
caryologia-232	451	56	of	of	ADP
caryologia-232	451	57	the	the	DET
caryologia-232	451	58	only	only	ADJ
caryologia-232	451	59	strict	strict	ADJ
caryologia-232	451	60	african	african	ADJ
caryologia-232	451	61	representative	representative	NOUN
caryologia-232	451	62	of	of	ADP
caryologia-232	451	63	genus	genus	ADJ
caryologia-232	451	64	prunus	prunus	NOUN
caryologia-232	451	65	(	(	PUNCT
caryologia-232	451	66	p.	p.	NOUN
caryologia-232	451	67	africana	africana	NOUN
caryologia-232	451	68	):	):	PUNCT
caryologia-232	451	69	first	first	ADJ
caryologia-232	451	70	genome	genome	NOUN
caryologia-232	451	71	size	size	NOUN
caryologia-232	451	72	assessment	assessment	NOUN
caryologia-232	451	73	,	,	PUNCT
caryologia-232	451	74	heterochromatin	heterochromatin	NOUN
caryologia-232	451	75	and	and	CCONJ
caryologia-232	451	76	rdna	rdna	PROPN
caryologia-232	451	77	chromosome	chromosome	NOUN
caryologia-232	451	78	pattern	pattern	NOUN
caryologia-232	451	79	justine	justine	PROPN
caryologia-232	451	80	germo	germo	PROPN
caryologia-232	451	81	nzweundji1	nzweundji1	PROPN
caryologia-232	451	82	,	,	PUNCT
caryologia-232	451	83	marie	marie	PROPN
caryologia-232	451	84	florence	florence	PROPN
caryologia-232	451	85	sandrine	sandrine	PROPN
caryologia-232	451	86	ngo	ngo	PROPN
caryologia-232	451	87	ngwe2	ngwe2	PROPN
caryologia-232	451	88	,	,	PUNCT
caryologia-232	451	89	sonja	sonja	PROPN
caryologia-232	451	90	siljak	siljak	PROPN
caryologia-232	451	91	-	-	PUNCT
caryologia-232	451	92	yakovlev3	yakovlev3	NOUN
caryologia-232	451	93	,	,	PUNCT
caryologia-232	451	94	*	*	PUNCT
caryologia-232	451	95	assessment	assessment	NOUN
caryologia-232	451	96	of	of	ADP
caryologia-232	451	97	cytotoxicity	cytotoxicity	NOUN
caryologia-232	451	98	and	and	CCONJ
caryologia-232	451	99	mutagenicity	mutagenicity	NOUN
caryologia-232	451	100	of	of	ADP
caryologia-232	451	101	insecticide	insecticide	NOUN
caryologia-232	451	102	demond	demond	NOUN
caryologia-232	451	103	ec25	ec25	PROPN
caryologia-232	451	104	in	in	ADP
caryologia-232	451	105	allium	allium	NOUN
caryologia-232	451	106	cepa	cepa	NOUN
caryologia-232	451	107	and	and	CCONJ
caryologia-232	451	108	ames	ames	PROPN
caryologia-232	451	109	test	test	NOUN
caryologia-232	451	110	arzu	arzu	VERB
caryologia-232	451	111	özkara	özkara	ADJ
caryologia-232	451	112	cytogenetic	cytogenetic	ADJ
caryologia-232	451	113	effects	effect	NOUN
caryologia-232	451	114	of	of	ADP
caryologia-232	451	115	fulvic	fulvic	ADJ
caryologia-232	451	116	acid	acid	NOUN
caryologia-232	451	117	on	on	ADP
caryologia-232	451	118	allium	allium	NOUN
caryologia-232	451	119	cepa	cepa	NOUN
caryologia-232	451	120	l.	l.	PROPN
caryologia-232	451	121	root	root	PROPN
caryologia-232	451	122	tip	tip	PROPN
caryologia-232	451	123	meristem	meristem	NOUN
caryologia-232	451	124	cells	cell	NOUN
caryologia-232	451	125	özlem	özlem	PROPN
caryologia-232	451	126	sultan	sultan	PROPN
caryologia-232	451	127	aslantürk	aslantürk	PROPN
caryologia-232	451	128	evaluation	evaluation	NOUN
caryologia-232	451	129	of	of	ADP
caryologia-232	451	130	the	the	DET
caryologia-232	451	131	cytotoxic	cytotoxic	ADJ
caryologia-232	451	132	and	and	CCONJ
caryologia-232	451	133	genotoxic	genotoxic	ADJ
caryologia-232	451	134	potential	potential	NOUN
caryologia-232	451	135	of	of	ADP
caryologia-232	451	136	some	some	DET
caryologia-232	451	137	heavy	heavy	ADJ
caryologia-232	451	138	metals	metal	NOUN
caryologia-232	451	139	by	by	ADP
caryologia-232	451	140	use	use	NOUN
caryologia-232	451	141	of	of	ADP
caryologia-232	451	142	allium	allium	NOUN
caryologia-232	451	143	test	test	NOUN
caryologia-232	451	144	ioan	ioan	PROPN
caryologia-232	451	145	sarac1	sarac1	PROPN
caryologia-232	451	146	,	,	PUNCT
caryologia-232	451	147	elena	elena	PROPN
caryologia-232	451	148	bonciu2	bonciu2	PROPN
caryologia-232	451	149	,	,	PUNCT
caryologia-232	451	150	*	*	PUNCT
caryologia-232	451	151	,	,	PUNCT
caryologia-232	451	152	monica	monica	PROPN
caryologia-232	451	153	butnariu1	butnariu1	PROPN
caryologia-232	451	154	,	,	PUNCT
caryologia-232	451	155	irina	irina	PROPN
caryologia-232	451	156	petrescu1	petrescu1	PROPN
caryologia-232	451	157	,	,	PUNCT
caryologia-232	451	158	emilian	emilian	PROPN
caryologia-232	451	159	madosa1	madosa1	PROPN
caryologia-232	451	160	fluorescence	fluorescence	NOUN
caryologia-232	451	161	in	in	ADP
caryologia-232	451	162	situ	situ	ADJ
caryologia-232	451	163	hybridisation	hybridisation	NOUN
caryologia-232	451	164	study	study	NOUN
caryologia-232	451	165	of	of	ADP
caryologia-232	451	166	micronuclei	micronucleus	NOUN
caryologia-232	451	167	in	in	ADP
caryologia-232	451	168	c3a	c3a	PROPN
caryologia-232	451	169	cells	cell	NOUN
caryologia-232	451	170	following	follow	VERB
caryologia-232	451	171	exposure	exposure	NOUN
caryologia-232	451	172	to	to	ADP
caryologia-232	451	173	elf	elf	NOUN
caryologia-232	451	174	-	-	PUNCT
caryologia-232	451	175	magnetic	magnetic	ADJ
caryologia-232	451	176	fields	field	NOUN
caryologia-232	451	177	luc	luc	PROPN
caryologia-232	451	178	verschaeve1,2	verschaeve1,2	PROPN
caryologia-232	451	179	,	,	PUNCT
caryologia-232	451	180	*	*	PROPN
caryologia-232	451	181	,	,	PUNCT
caryologia-232	451	182	roel	roel	PROPN
caryologia-232	451	183	antonissen1	antonissen1	PROPN
caryologia-232	451	184	,	,	PUNCT
caryologia-232	451	185	ans	an	NOUN
caryologia-232	451	186	baeyens3	baeyens3	NOUN
caryologia-232	451	187	,	,	PUNCT
caryologia-232	451	188	anne	anne	PROPN
caryologia-232	451	189	vral3	vral3	PROPN
caryologia-232	451	190	,	,	PUNCT
caryologia-232	451	191	annemarie	annemarie	NOUN
caryologia-232	451	192	maes1	maes1	ADJ
caryologia-232	451	193	phytochemical	phytochemical	ADJ
caryologia-232	451	194	analysis	analysis	NOUN
caryologia-232	451	195	and	and	CCONJ
caryologia-232	451	196	in	in	ADP
caryologia-232	451	197	vitro	vitro	X
caryologia-232	451	198	assessment	assessment	NOUN
caryologia-232	451	199	of	of	ADP
caryologia-232	451	200	polystichum	polystichum	ADJ
caryologia-232	451	201	setiferum	setiferum	NOUN
caryologia-232	451	202	extracts	extract	NOUN
caryologia-232	451	203	for	for	ADP
caryologia-232	451	204	their	their	PRON
caryologia-232	451	205	cytotoxic	cytotoxic	ADJ
caryologia-232	451	206	and	and	CCONJ
caryologia-232	451	207	antimicrobial	antimicrobial	ADJ
caryologia-232	451	208	activities	activity	NOUN
caryologia-232	451	209	nicoleta	nicoleta	PROPN
caryologia-232	451	210	anca	anca	PROPN
caryologia-232	451	211	şuţan1	şuţan1	PROPN
caryologia-232	451	212	,	,	PUNCT
caryologia-232	451	213	*	*	PROPN
caryologia-232	451	214	,	,	PUNCT
caryologia-232	451	215	irina	irina	PROPN
caryologia-232	451	216	fierăscu2	fierăscu2	PROPN
caryologia-232	451	217	,	,	PUNCT
caryologia-232	451	218	radu	radu	PROPN
caryologia-232	451	219	fierăscu2	fierăscu2	PROPN
caryologia-232	451	220	,	,	PUNCT
caryologia-232	451	221	deliu	deliu	PROPN
caryologia-232	451	222	ionica1	ionica1	PROPN
caryologia-232	451	223	,	,	PUNCT
caryologia-232	451	224	liliana	liliana	PROPN
caryologia-232	451	225	cristina	cristina	PROPN
caryologia-232	451	226	soare1	soare1	PROPN
caryologia-232	452	1	telomeric	telomeric	PROPN
caryologia-232	452	2	heterochromatin	heterochromatin	NOUN
caryologia-232	452	3	and	and	CCONJ
caryologia-232	452	4	meiotic	meiotic	ADJ
caryologia-232	452	5	recombination	recombination	NOUN
caryologia-232	452	6	in	in	ADP
caryologia-232	452	7	three	three	NUM
caryologia-232	452	8	species	specie	NOUN
caryologia-232	452	9	of	of	ADP
caryologia-232	452	10	coleoptera	coleoptera	NOUN
caryologia-232	452	11	(	(	PUNCT
caryologia-232	452	12	dorcadion	dorcadion	NOUN
caryologia-232	452	13	olympicum	olympicum	NOUN
caryologia-232	452	14	ganglebauer	ganglebauer	NOUN
caryologia-232	452	15	,	,	PUNCT
caryologia-232	452	16	stephanorrhina	stephanorrhina	PROPN
caryologia-232	452	17	princeps	princeps	PROPN
caryologia-232	452	18	oberthür	oberthür	PROPN
caryologia-232	452	19	and	and	CCONJ
caryologia-232	452	20	macraspis	macraspis	VERB
caryologia-232	452	21	tristis	tristis	PROPN
caryologia-232	452	22	laporte	laporte	PROPN
caryologia-232	452	23	)	)	PUNCT
caryologia-232	452	24	anne	anne	PROPN
caryologia-232	452	25	-	-	PUNCT
caryologia-232	452	26	marie	marie	PROPN
caryologia-232	452	27	dutrillaux	dutrillaux	NOUN
caryologia-232	452	28	,	,	PUNCT
caryologia-232	452	29	bernard	bernard	NOUN
caryologia-232	452	30	dutrillaux	dutrillaux	NOUN
caryologia-232	452	31	*	*	VERB
caryologia-232	452	32	a	a	DET
caryologia-232	452	33	whole	whole	ADJ
caryologia-232	452	34	genome	genome	NOUN
caryologia-232	452	35	analysis	analysis	NOUN
caryologia-232	452	36	of	of	ADP
caryologia-232	452	37	long	long	ADJ
caryologia-232	452	38	-	-	PUNCT
caryologia-232	452	39	terminal	terminal	ADJ
caryologia-232	452	40	-	-	PUNCT
caryologia-232	452	41	repeat	repeat	NOUN
caryologia-232	452	42	retrotransposon	retrotransposon	NOUN
caryologia-232	452	43	transcription	transcription	NOUN
caryologia-232	452	44	in	in	ADP
caryologia-232	452	45	leaves	leave	NOUN
caryologia-232	452	46	of	of	ADP
caryologia-232	452	47	populus	populus	ADJ
caryologia-232	452	48	trichocarpa	trichocarpa	NOUN
caryologia-232	452	49	l.	l.	PROPN
caryologia-232	452	50	subjected	subject	VERB
caryologia-232	452	51	to	to	ADP
caryologia-232	452	52	different	different	ADJ
caryologia-232	452	53	stresses	stress	NOUN
caryologia-232	452	54	alberto	alberto	PROPN
caryologia-232	452	55	vangelisti	vangelisti	PROPN
caryologia-232	452	56	#	#	SYM
caryologia-232	452	57	,	,	PUNCT
caryologia-232	452	58	gabriele	gabriele	PROPN
caryologia-232	452	59	usai	usai	PROPN
caryologia-232	452	60	#	#	PROPN
caryologia-232	452	61	,	,	PUNCT
caryologia-232	452	62	flavia	flavia	PROPN
caryologia-232	452	63	mascagni	mascagni	PROPN
caryologia-232	452	64	#	#	PROPN
caryologia-232	452	65	,	,	PUNCT
caryologia-232	452	66	lucia	lucia	PROPN
caryologia-232	452	67	natali	natali	PROPN
caryologia-232	452	68	,	,	PUNCT
caryologia-232	452	69	tommaso	tommaso	PROPN
caryologia-232	452	70	giordani	giordani	PROPN
caryologia-232	452	71	*	*	PROPN
caryologia-232	452	72	,	,	PUNCT
caryologia-232	452	73	andrea	andrea	PROPN
caryologia-232	452	74	cavallini	cavallini	PROPN
caryologia-232	452	75	differences	difference	NOUN
caryologia-232	452	76	in	in	ADP
caryologia-232	452	77	c	c	NOUN
caryologia-232	452	78	-	-	PUNCT
caryologia-232	452	79	band	band	NOUN
caryologia-232	452	80	patterns	pattern	NOUN
caryologia-232	452	81	between	between	ADP
caryologia-232	452	82	the	the	DET
caryologia-232	452	83	japanese	japanese	ADJ
caryologia-232	452	84	house	house	PROPN
caryologia-232	452	85	mice	mice	NOUN
caryologia-232	452	86	(	(	PUNCT
caryologia-232	452	87	mus	mus	PROPN
caryologia-232	452	88	musculus	musculus	PROPN
caryologia-232	452	89	)	)	PUNCT
caryologia-232	452	90	in	in	ADP
caryologia-232	452	91	hokkaido	hokkaido	PROPN
caryologia-232	452	92	and	and	CCONJ
caryologia-232	452	93	eastern	eastern	ADJ
caryologia-232	452	94	honshu	honshu	PROPN
caryologia-232	452	95	hikari	hikari	PROPN
caryologia-232	452	96	myoshu	myoshu	NOUN
caryologia-232	452	97	,	,	PUNCT
caryologia-232	452	98	masahiro	masahiro	PROPN
caryologia-232	452	99	a.	a.	PROPN
caryologia-232	452	100	iwasa	iwasa	PROPN
caryologia-232	452	101	*	*	PUNCT
caryologia-232	452	102	karyotypic	karyotypic	NOUN
caryologia-232	452	103	description	description	NOUN
caryologia-232	452	104	and	and	CCONJ
caryologia-232	452	105	repetitive	repetitive	ADJ
caryologia-232	452	106	dna	dna	NOUN
caryologia-232	452	107	chromosome	chromosome	NOUN
caryologia-232	452	108	mapping	mapping	NOUN
caryologia-232	452	109	of	of	ADP
caryologia-232	452	110	melipona	melipona	PROPN
caryologia-232	452	111	interrupta	interrupta	PROPN
caryologia-232	452	112	latreille	latreille	PROPN
caryologia-232	452	113	,	,	PUNCT
caryologia-232	452	114	1811	1811	NUM
caryologia-232	452	115	(	(	PUNCT
caryologia-232	452	116	hymenoptera	hymenoptera	NOUN
caryologia-232	452	117	:	:	PUNCT
caryologia-232	452	118	meliponini	meliponini	PROPN
caryologia-232	452	119	)	)	PUNCT
caryologia-232	452	120	natália	natália	PROPN
caryologia-232	452	121	martins	martins	PROPN
caryologia-232	452	122	travenzoli1	travenzoli1	PROPN
caryologia-232	452	123	,	,	PUNCT
caryologia-232	452	124	ingrid	ingrid	PROPN
caryologia-232	452	125	cândido	cândido	PROPN
caryologia-232	452	126	de	de	PROPN
caryologia-232	452	127	oliveira	oliveira	PROPN
caryologia-232	452	128	barbosa2	barbosa2	PROPN
caryologia-232	452	129	,	,	PUNCT
caryologia-232	452	130	gislene	gislene	PROPN
caryologia-232	452	131	almeida	almeida	PROPN
caryologia-232	452	132	carvalho	carvalho	PROPN
caryologia-232	452	133	-	-	PUNCT
caryologia-232	452	134	zilse2	zilse2	PROPN
caryologia-232	452	135	,	,	PUNCT
caryologia-232	452	136	tânia	tânia	PROPN
caryologia-232	452	137	maria	maria	PROPN
caryologia-232	452	138	fernandes	fernandes	PROPN
caryologia-232	452	139	salomão3	salomão3	PROPN
caryologia-232	452	140	,	,	PUNCT
caryologia-232	452	141	denilce	denilce	PROPN
caryologia-232	452	142	meneses	menese	NOUN
caryologia-232	452	143	lopes1	lopes1	PROPN
caryologia-232	452	144	,	,	PUNCT
caryologia-232	452	145	*	*	PUNCT