001.docx


 CHEMICAL ENGINEERING TRANSACTIONS  
 

VOL. 83, 2021 

A publication of 

 
The Italian Association 

of Chemical Engineering 
Online at www.cetjournal.it 

Guest Editors: Jeng Shiun Lim, Nor Alafiza Yunus, Jiří Jaromír Klemeš 
Copyright © 2021, AIDIC Servizi S.r.l. 
ISBN 978-88-95608-81-5; ISSN 2283-9216 

Recovery of Nutrients from Fish Sludge as Liquid Fertilizer to 
Enhance Sustainability of Aquaponics: A Review  

Hong Zhanga, Yueshu Gaoa, Junyan Liua, Zhiyun Lina, Chew Tin Leeb, Haslenda 
Hashimb, Wei-Min Wuc, Chunjie Lia,* 
aSchool of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China  
bSchool of Chemical & Energy Engineering, Universiti Teknologi Malaysia, 81310 Johor Bahru, Johor, Malaysia 
cDepartment of Civil & Environmental Engineering, Center for Sustainable Development and Global Competitiveness,  
 William & Cloy Codiga Resource Recovery Research Center, Stanford University, Stanford, CA 94305-4020, USA  
 cjli@sjtu.edu.cn 

Aquaponics combines aquaculture with hydroponics by recirculating water in a closed loop. As an innovative 
environmental-friendly system, aquaponics is able to reuse available nutrient resource and minimize waste 
discharge. Current commercial aquaponics technologies only recycle liquid effluent but considerable amount 
of fish sludge is filtered out of the system as waste, and therefore, a great proportion of nutrients in the sludge 
has not re-utilized as resource. Recovering nutrients from fish sludge directly and reintroducing it into 
aquaponics as liquid fertilizer has become attractive because of environmental and economic benefits which 
enhance the sustainability of aquaponics. This article reviewed recent progress in aquaponic system with fish 
sludge management as resource, including the potential of recovering nutrients in fish sludge, methods for 
collection of fish sludge, and the nutrient recovery via the mineralization of fish sludge. The results indicate 
that the management of fish sludge can be optimized to ensure high efficiency of nutrient utilization in 
aquaponics. Effective collection and digestion of the fish sludge to generate nutrients are the key for 
successful nutrient recovery. The digestion of the concentrated sludge can be performed either in anaerobic 
reactors or aerobic reactors. Combining the collection of fish sludge with the conversion of solid nutrients in a 
single device is effective in achieving high nutrient recovery efficiency of aquaponic system. A modified 
biological aerated filter in the process is proposed for the filtration of fish sludge and the conversion of 
nutrients in aquaponics. 

1. Introduction 
An evolutional food production system which is intensified, highly productive and environmental-friendly is 
urgently required to satisfy the need of rapid urbanization (Li et al., 2018). Aquaponics, an integrated 
recirculating water system which combines aquaculture with hydroponics, is a promising approach for 
industrialized food production (Dong et al., 2020). It mainly composes of fish tanks, a mechanical filtration unit 
for solid removal, a biofilter for nitrification, a hydroponic unit and a UV disinfection unit. They form a closed 
loop and enable aquaculture effluent to provide fertilizer for the growth of edible plant. In turn, with the uptake 
of plant, water quality is improved and inhibitory metabolites, such as ammonia and nitrite can be removed, 
thus the effluent can flow back into aquaculture unit for reuse. The unique combination of two systems 
eliminates the weakness of both when running separately and bring some superior merits to aquaponics, such 
as obvious reduction in land use, efficient utilization of water and nutrients, high productivity and quality of fish 
and plants, and low pollutant discharge.  
In aquaponics, fish feed, as the main input of nutrients, is partially assimilated to fish biomass, and converted 
to soluble excreta, solid faeces with various portion of uneaten/residual feed. The soluble components could 
provide macronutrients and micronutrients for plant. Fish sludge is composed of solid faeces and uneaten 
feed, and remains as suspended and precipitated solids. Strauch et al. (2018) indicated that 7.1–9.9 % of the 
fish feed input would finally be sediments. Cerozi and Fitzsimmons (2017) estimated that 25–35 % of the feed 
may remain in water as suspended solids. Once aquaculture wastes accumulated without proper treatment, 

 
 
 
 
 
 
 
 
 
 
                                                                                                                                                                 DOI: 10.3303/CET2183010 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Paper Received: 05/06/2020; Revised: 28/06/2020; Accepted: 12/07/2020 
Please cite this article as: Zhang H., Gao Y., Liu J., Lin Z., Lee C.T., Hashim H., Wu W.-M., Li C., 2021, Recovery of Nutrients from Fish 
Sludge as Liquid Fertilizer to Enhance Sustainability of Aquaponics: A Review, Chemical Engineering Transactions, 83, 55-60  
DOI:10.3303/CET2183010 
  

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they may lead to higher oxygen consumption, the production of toxins, eutrophication, and the blockage of 
plumbing and equipment (Fu et al., 2018). Fine particles may also get into gills of fish or coat on roots of 
plants, threatening their survival.  
Solid waste management is essential for aquaponics. At present, only nutrient in liquid effluent is recovered in 
aquaponics while fish sludge is concentrated by mechanical filtration unit and then removed from the system 
as waste (Khiari et al., 2019). According to Cerozi and Fitzsimmons (2017), daily sludge discharged accounts 
for 5–20 % of the total volume of recirculating aquaculture system. The discarded sludge can be further 
treated by land field application, composting, or anaerobic digestion. Field application comes with high 
transportation cost due to the high water content of sludge (≥99.76%) (Strauch et al., 2018), incalculable loss 
of nutrients and severe environmental pollution. Composting has been accepted as a promising method of 
stabilizing solid waste. It converts sludge into humic substances with a significant reduction in volume and the 
stabilized end product can serve as solid fertilizer and soil conditioner. The shortcomings are long processing 
period and air pollution due to emission of ammonia and pollutant VOCs (Volatile Organic Compounds). 
Anaerobic digestion decomposes organic matters by anaerobic bacteria to generate methane as biogas 
energy resource and nutrients like ammonium and phosphate in liquid phase could be reused. Remaining 
digested sludge can also be used as fertilizer. It is limited by production of offensive odours, low by-products 
yield, high process variability, and decreased nutrients availability (Khiari et al., 2019).  
The management of fish sludge remains an issue regarding on the nutrient recovery and enhancement of the 
efficiency in aquaponics. This paper introduces a new way of fish sludge management in aquaponics: 
recovering nutrients from fish sludge and reintroducing them into the system as liquid fertilizer. The potential of 
nutrient recovery in fish sludge, technologies for collection of fish sludge, and the nutrient mineralization are 
reviewed. A modified biological aerated filter is also proposed for both the filtration and the nutrient conversion 
of fish sludge. 

2. Potential of nutrient recovery from fish sludge in aquaponics 
As a closed loop of food production system, aquaponics is desired to fulfil zero discharge, eliminate negative 
environmental impact and enhance system sustainability. A great potential is to recover the nutrients of fish 
sludge into soluable form via mineralization and then reintroduce the obtained nutrient solution as recirculating 
water to provide liquid fertilizers for hydroponic plants (Goddek et al., 2019).  
Aquaculture sludge contains large amounts of water, nutrients and energy, which should not be regarded as 
merely waste. According to Fu et al. (2018), 17 %, 3 %, and 62 % of residual feed and fish faeces are protein, 
fat and carbohydrates (based on dry matter). Most macronutrients and micronutrients that are essential for the 
plant can be obtained from aquaculture solid waste. Cripps and Bergheim (2000) mentioned that the sludge 
solids contain 7–32 % of the total nitrogen and 30–84 % of the total phosphorus of the wastewater. Goddek et 
al. (2019) noticed that among macronutrient, 6 % of the nitrogen, 18 % of the phosphorus, 6 % of the 
potassium, 16 % of the calcium, 89 % of the magnesium are contained in the sludge; while for micronutrients, 
24 % of the iron, 86 % of the manganese, 47 % of the zinc, and 22 % of the copper were measured (based on 
dry matter). Phosphorus is more present in sludge (Delaide et al., 2017). Micronutrients like Cu, Zn and Mn 
are also mainly concentrated in solids (Strauch et al., 2018). More than 99% of N, P, Fe, Mn, Zn, Se, Co and 
Cr, 95–98% of K, 69–87% of Ca, 67–85% of Mg, 69–86% of S, 95–98% Mo, and 90–96% Cu are derived from 
fish feed (based on dry matter) (Strauch et al., 2018). 
Nutrient recovery from fish sludge can also alleviate the problem of plant nutrient deficiency faced by 
aquaponics and save the cost of additional purchase of plant nutrients. According to the definition of 
aquaponics by EU Aquaponics Hub, no less than half of the nutrition that hydroponics needs should be 
provided by aquaculture tank. The existing system is far from meeting this requirement. It was found that most 
nutrients provided by the aquaculture effluent are insufficient compared with those in the nutrient solutions 
used by independent hydroponic systems (N: 70–164 mg/L, P: 5–40 mg/L, K: 120–280 mg/L, Ca: 80–140 
mg/L, Mg: 40–60 mg/L, S: 60–130 mg/L, Fe: 2.0–6.0 mg/L, Mn: 0.4–1.0 mg/L, B: 0.2–1.0 mg/L, Cu: 0.01–0.1 
mg/L, Zn: 0.04–0.08 mg/L, Mo: 0.01–0.4 mg/L). Therefore, the hydroponic products in aquaponics are 
restricted to leafy vegetables rather than fruit crops (Nozzi et al., 2018). Aquaculture effluent is generally 
deficient in phosphorus, potassium, calcium and micronutrients, especially iron, molybdenum and manganese 
(Delaide et al., 2017). If the nutrients obtained via fish sludge mineralization were added into aquaculture 
effluent, the concentrations of total nutrients available for plants would be effectively increased, and the 
deficiency of specific nutrients could be eliminated (Montanhini Neto and Ostrensky, 2015). 

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3. Technologies for collection of fish sludge 
Collecting fish sludge effectively has a great significance to the recovery of nutrients. At present, the solid 
removal methods adopted by aquaponics are mainly those used in the recirculating aquaculture system (RAS) 
which include sedimentation, sieve separation, medium filtration and foam separation. Sedimentation works 
on the basis of the gravity of particles and the centrifugal force generated by the water flow rotation or the 
centripetal force generated by the secondary retention. Settling basins, tube or plate separators, centrifugal 
separators, and swirl separators are commonly used devices (Rakocy, 2012). Sedimentation requires lower 
energy consumption and operating cost but is time-consuming and manpower-consuming for it is bulky. Sieve 
separation traps solids by a sieve with a certain aperture base on the particle size and removes solids by 
backwashing. Drum filters are the most frequently used equipment. For suspended solids with particle size 
between 60-100 microns, the removal rate of rotary drum filters can reach 68–94 % when the inlet 
concentration is higher than 50 mg/L (Cheng et al., 2014). But the cost of drum filter is high, and the 
secondary crushing of large particles may be caused in the process, which reduces the efficiency (Cheng et 
al., 2014). Media filtration intercepts the suspended solids by the media such as quartz sand, ceramsite, 
anthracite, and polystyrene materials due to the pores formed. Sand and gravel hydroponic substrates are 
good alternative for solid waste removal as they intercept solids when aquaculture effluent flow through 
hydroponic bed and simultaneously decompose organic matters of the solid remained in the unit (Rakocy, 
2012). Bed tillage or periodic media replacement is required from system water in case of the clogging of the 
media (Rakocy, 2012). Foam separation is a technique using the interface properties of surfactants and the 
bubbles generated to adsorb the solids. Foam separation needs less energy and has good performance on 
removing particles less than 10 microns or 50-90 microns, but can be limited by low concentration of organic 
matter and electrolytes (Shan et al., 2013). 
The particle size and density of solid are two parameters in consideration of suitable separation technology for 
fish sludge. In the recirculating aquaculture system, the particle size distribution range of solid particles is 
relatively wide, from 3 to 300 microns, most of which are less than 20 microns, accounting for more than 47 % 
of the total weight of particles (Chen et al., 1993). Particles size over 100 microns are settleable solids, which 
are suitable for gravity sedimentation or using hydrocyclone; size under 100 microns are unsettleable solids 
and some of them may be further dispersed into fine particles with particle size smaller than 30 microns under 
the action of aquatic organisms and water power (Fu et al., 2018). Solids with particle size less than 60 
microns are suitable for mechanical filtration or physicochemical methods (Zhang et al., 2008).  
Combining the collection of fish sludge with the conversion of solid nutrients in a single equipment in 
aquaponics has been proposed by Zhang et al. (2020) and may be a trend. All the sludge collected in the filter 
can be further mineralized into soluable nutrients by activities of microorganisms, which can reduce nutrient 
loss to a higher degree and is highly-efficient in nutrient utilization. 

4. The nutrient mineralization of fish sludge 
Fish sludge can be mineralized into soluble and bioavailable nutrients that hydroponic plants can uptake either 
in anaerobic reactors or aerobic reactors with degradation by microorganisms (Delaide et al., 2018). 
Anaerobic digestion has been regarded as a promising way to stabilize and reduce solid waste along with 
methane production. In recent years, it also has been evaluated with nutrient recovery. The anaerobic 
digestion produces less residual sludge than aerobic process (Gichana et al., 2018). It consumes less energy 
due to without aeration and can produce biogas to recover energy, which brings economic benefits. 
Continuously stirred tank reactor (CSTR), upflow anaerobic sludge blanket (UASB) reactor and membrane 
bioreactor are common reactors of anaerobic digestion (Mirzoyan et al., 2010). Goddek et al. (2018) 
investigated the mineralization performance of fish sludge from RAS in sequential UASB-EGSB reactors and 
recovered 26–71 % P, K, Ca, and Mg (based on dry matter) in the minimally acidic reactor. Delaide et al. 
(2018) found that among 2–35.8 % of phosphorus, calcium, magnesium and boron and among 5.7–21.9 % of 
copper, zinc and manganese (based on dry matter) were mineralized in anaerobic reactor for nutrient 
recycling in aquaponics. Anaerobic digestion faces some drawbacks, including long reaction period and strict 
requirements of conditions such as pH, temperature, salinity, mineral composition, carbon/nitrogen ratio (C/N), 
volatile fatty acids (VFAs) content and hydraulic retention time (HRT) (Mirzoyan et al., 2010). According to 
Strauch et al. (2018), TOC (Total Organic Carbon) in aquaculture sludge (366–416 g/kg·dm) is 36–42 % lower 
than that of typical matrix, and C/N is 1.1–3.8 times lower than the recommended value of anaerobic 
digestion. This reveals that it is necessary to adjust composition of the fish sludge before anaerobic digestion 
in order to ensure digestion performance, i.e., supplementing acids, carbon sources and bacterial suspension 
(Monsees et al., 2017). 

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Aerobic conversion of fish sludge decomposes organic matters and releases a variety of minerals, including all 
the macronutrients and micronutrients that plants need via activities of a variety of heterotrophic 
microorganisms (Khiari et al., 2019). Aerobic conversion has the advantage in dynamics compared with 
anaerobic reaction, especially in terms of TSS (Total Suspended Solid) and COD (Chemical Oxygen Demand) 
removal (Delaide et al., 2018). The production of VFAs, anaerobic secondary metabolites and other toxins to 
plants can also be avoided. At this point, aerobic conversion is more environmental friendly and safe due to 
the reduction in odour, greenhouse gas emissions and pathogens. Aerobic conversion shows higher nutrients 
capture abilities and less nutrient loss. Monsees et al. (2017) found that the concentration of nitrate in the 
aerobic reactors was reduced by 16 % compared to 97 % in the unaerated treatment. Aerobic digestion also 
increased the concentration of P and K by 330 % and 31 % within 14 d of incubation, while those under 
anaerobic treatment only had minor increase (Monsees et al., 2017). Delaide et al. (2018) also concluded 
better mineralization performances of P (54.25 %), Ca (64.95 %), Mg (57.49 %), B (62.98 %), Cu (21.79 %), 
Zn (24.60 %), Mg (13.18 %), Na (55.98 %) (based on dry matter) in aerobic reactors. Rakocy et al. (2007) 
showed concentrations of six of thirteen nutrients required by plant exceeded standard hydroponic values after 
aerobic mineralization of 29 d. The disadvantage of aerobic digestion is the high energy consumption due to 
continuous aeration, the management complexity and capital costs of the system. The growth rate of 
microorganisms under aerobic conditions is much faster than that under anaerobic conditions, thus a 
considerable amount of new biomass may be produced and accumulated in the reactor, which is not 
conducive to the reduction of solids (Delaide et al., 2018). In general, aerobic digestion may also be a 
promising approach for nutrient recovery from fish sludge in aquaponics (Monsees et al., 2017). 

5. Modified biological aerated filter for nutrient recovery from fish sludge 
Biological aerated filter (BAF) is a flexible and efficient bioreactor developed on the basis of European 
bioreactor (Wu et al., 2015). BAF is filled with granular media or porous media which can trap solids from 
water passing through. The large specific surface area of filter media also enable the growth of nitrifying 
bacteria and heterotrophic bacteria, which are responsible for the removal of ammonium and the degradation 
of organic compounds in water. For years, it has been used for treating industrial and municipal wastewater. 
Considering BAF integrates mechanical filtration with biofiltration, it may also perform well in the recovery of 
nutrients from aquaculture sludge after proper modification. The modified BAF should be capable of both the 
collection and the aerobic nutrient mineralization of fish sludge. Specifically, the BAF should quickly capture a 
large amount of sludge and then efficiently convert the sludge in nutrients without backwashing, thus reducing 
the nutrient loss at maximum and improving the operating efficiency with a compact footprint. 
Recently, a new BAF which is modified based on the reactor reported by Zhang et al. (2020) has been 
proposed to fulfill the collection of fish sludge and the recovery of nutrients in one device. The reactor is 
composed of two columns connected by the flange (Figure 1a). The upperside column is transparent, which is 
used for observing the level of water. The downside column with filter materials inside is for the interception of 
sludge. The effluent is pumped into the BAF from the upperside column and then flows downward through the 
lowerside column. Three layers of perforated aerator, named high-level aerator, middle-level aerator and low-
level aerator, are equipped in the lowerside column which is controlled by valves. The upper filter media will 
be blocked by the fish sludge first, resulting in the rise of water level in the upperside column. In this case, 
high-level aerator is opened, which alleviating the resistance of upper filter media. Meanwhile, the middle filter 
media intercepts fish sludge. Once the water level in upperside column is observed again, the middle-level 
aerator is opened and the lower layer of filter media work. Until the water level in upperside column rises 
again, the valve of effluent of BAF is then closed and the low-level aerator is also opened for nutrient 
conversion.  
For industrial production, the BAF can be designed as: upperside column (height=0.4 m, diameter=0.12 m), 
made of plexiglass; downside column (height=0.9 m, diameter=0.3 m), made of polyvinyl chloride. In high 
density aquaculture (2–8 kg/m3) with daily feed input accounting for 4 % of the fish weight, two BAFs may 
provide effective filtration for 20–30 d. 
The selection of filter media in BAF is of great importance. Zhang et al. (2020) tested ceramsite with different 
lignocellulosic materials as filter media of BAFs and gained inspiring nutrient recovery efficiency for most 
macronutrients and micronutrients. The BAFs encountered constrains because of the biodegradation of 
lignocellulosic materials and nutrient loss. For small scale or home-based aquaponics, the retention rate of 
fish sludge can be improved by using sponge materials. For large scale or factory-based aquaponics, porous 
polyethylene floating balls which normally used in moving bed bioreactor (MBBR) are recommended. 
A proposed aquaponic system with the modified BAF is shown in Figure 1b, which includes the fish tank, the 
sump with BAFs, the immobilized biofilm unit with polypropylene fibers (PF) and immobilized microbial 
granules (IMG) in separate compartments, the hydroponic unit, and the ultraviolet (UV) disinfection tank. In 

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this system, the modified BAF intercepts fish sludge. The BAF is operated as a bypass circulation rather than 
full-flow filtration. Thus, it is inevitable that a portion of fish sludge flows via the whole system. In order to 
reduce the impact of the residual fish sludge, the unit with polypropylene fibers acts for the interception for the 
sludge. Immobilized microbial granules (IMG) are used for the conversion of ammonia nitrogen into nitrate. 
The flow rate of circulating water of the BAF is an important operational parameter. The faster the circulating 
rate is, the higher the efficiency of interception of fish sludge is, which is benefit for nutrient recovery, but more 
energy is consumed. In the proposed system, at least two BAFs are required to alternatively perform 
continuous operation: one is used for fish sludge collection (BAF-F) and another is for nutrient conversion 
(BAF-C). After the nutrient conversion period is ended in a BAF, the liquid solution flows from the BAF into the 
hydroponic system.  
In this aquaponic system with BAFs, the nutrients that hydroponic plants need all come from fish tank. The 
system recovers nutrients effectively in a closed loop, thus is environmentally friendly and cost-effectively.  
Future research should be performed for the improvement in the efficiency of nutrient recovery by 
investigating the mechanisms of nutrient balance and optimizing operational parameters of BAFs. 

(a) (b)  

Figure 1: Schematic of (a) the modified BAF, and (b) aquaponics with modified BAFs  

6. Conclusions 
Aquaponics is desired to fulfil zero discharge, eliminate negative environmental impact and enhance 
sustainability of aquaculture with hydroponics. This system can be enhanced further via recovery of the 
nutrients of fish sludge and reuse of the treated water. Effective collection of fish sludge and efficient nutrient 
mineralization are crucial to solid nutrient recovery in aquaponics. Combining the fish sludge separation with 
nutrient conversion in a single device is an effective way. The digestion of the concentrated sludge can be 
performed in either in anaerobic reactors or aerobic reactors. A modified BAF is proposed to perform as both 
filter for sludge collection and bioreactor for nutrient conversion in order to fulfil nutrient recovery effectively in 
a closed loop, with environmental and economic benefits. Future research should be performed for the 
improvement in the efficiency of nutrient recovery by modifying device design and optimizing operational 
parameters for solid collection and sludge mineralization as well as investigating the mechanisms of nutrient 
balance. 

Acknowledgments 

This research is financially supported by the National Natural Science Foundation of China (No. 21808141), 
the Science and Technology Commission of Shanghai Municipality (No. 18230743000), and the Startup Fund 
for Youngman Research of Shanghai Jiao Tong University (17X100040069). 

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