CHEMICAL ENGINEERING TRANSACTIONS  
 

VOL. 51, 2016 

A publication of 

 
The Italian Association 

of Chemical Engineering 
Online at www.aidic.it/cet 

Guest Editors: Tichun Wang, Hongyang Zhang, Lei Tian 
Copyright © 2016, AIDIC Servizi S.r.l., 

ISBN 978-88-95608-43-3; ISSN 2283-9216 

The Susceptibility of Soil Microbial Metabolism and 
Diazotroph Functional Groups to Silica Nanoparticles 

Hankui Chaia, Jun Yao*,a,Mijia Zhua, Brunello Ceccantib 
a School of Civil & Environmental Engineering, National International Cooperation Base on Environment and Energy,  
University of Science and Technology Beijing, 100083 Beijing, PR China 
b Institute of Ecosystem Studies (ISE), Italian National Research Council (CNR), Pisa, Italy 
yaojun@ustb.edu.cn 

The agro-ecological effect of silica nanoparticles on soil metabolism has been investigated by 
microcalorimetry with specific enzymatic tests (urease, catalase and fluorescein diacetate hydrolase, FDA) 
and diazothroph account. Three SNP doses (10, 25 and 50 mg kg-1) corresponding to each dimension (9, 12 
and 40 nm) were used. The thermodynamic parameters obtained from the power-time curves showed an 
increase, with some exception, of total heat output, microbial growth rate constant (k) and heat output peak 
(Pmax) by increasing SNP dose, indicating a general stimulation of microbial populations. Urease and FDA 
activity, except catalase, showed similar positive size-dose response thus supporting microcalorimetric 
analysis. However, no direct effects on diazotrophs were found. The results confirmed the capability of SNP to 
maintain or enhance nitrogenous nutrient availability and to promote microbial deoxygenation of the soil 
microenvironments. SNP did not depress total microbial biomass (no changes in FDA) or impair plant nutrition 
and the diazotroph taxa. 

1. Introduction 

Engineered nanoparticles (NP) are now becoming a significant fraction of the material in global economy. 
Their application in the fields of material sciences, industrial engineering and medical care has increased in 
last few years owing to their special and novel physical and chemical properties (Tso et al., 2010, Keller et al., 
2013; Wehling et al., 2013). The reduction of particle size to nanoscale dimension not only provides benefits to 
diverse medical and technological areas but also poses potential risks for human health and ecosystem safety 
once dispersed into the environment (Dominique et al., 2013, Arne et al., 2013). Now NP pollution is an 
increasing environmental problem and worldwide concern (Yotova et al., 2015; Feng et al., 2015; Wu et al., 
2014; Li and Zhang, 2014). Silicon is the second most abundant element on the earth’s crust, but silica 
nanoparticles (SNP) may be not beneficial for many organisms as their bulk (Schaller et al., 2013). Previous 
research on phytotoxicity of SNP showed that they were non-toxic (Lee et al., 2009). By contrast, serious 
damage was detected in pulmonary and angiocarpy of adult mice after inhalation of SNP (Chen et al., 2008). 
Disperse SNP caused cell membrane damage of Saccharomyces cerevisiae (García et al., 2011). SNP 
showed size-dependent toxicity for microorganisms which increased by decreasing particle sizes (Wehling et 
al., 2013). SNP were also found to exhibit size-dependent toxicity toward the alga (Chlorella kessleri, 
Pseudokirchneriella subcapitata) (Fujiwara et al., 2008, Van et al., 2011).  
The abuse of NP will cause accumulation over time in the form of aggregates and colloids, producing an 
unpredictable anthropogenic waste in the agroecosystem (Thul et al., 2013). Emissions of NP into soils 
represent up to about a quarter of the material flows, mostly from disposal of biosolids to land, thus 
highlighting the importance of understanding the impact of NP on agriculture soils (Keller et al., 2013). 
Therefore, more data are required about the behavior of NP in soil and their interactions with microorganisms 
especially under intensive cultivation. Heat transfer in conjunction with other specific bio-tests has been 
successfully applied to assess the impacts of environmental hazardous pollutants on soil microbial metabolism 
(Mahmoudi and Mejri, 2015; Hongyang,2015; Biserni and Garai, 2016). In microcalorimetry, the heat evolution 
is positively correlated to the amount of glucose degradation, microbial biomass and activity in glucose-

                               
 
 

 

 
   

                                                  
DOI: 10.3303/CET1651014

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Please cite this article as: Chai H.K., Yao J., Zhu M.J., Ceccanti B., 2016, The susceptibility of soil microbial metabolism and diazotroph 
functional groups to silica nanoparticles, Chemical Engineering Transactions, 51, 79-84  DOI:10.3303/CET1651014   

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addition calorimetric assays (Kimura and Takahashi, 1985). In addition, developing new approaches to assess 
soil enzyme functional diversity is necessary for our comprehending of the relations between resource 
availability, microbial community structure and function, and ecosystem processes (Caldwell, 2005). As such, 
this study focuses on the effects of various sizes of SNP on microbial metabolism in agricultural soil. The 
thermogenic metabolic energy flux, enzymatic activities (urease, catalase, fluorescein diacetate hydrolase) 
and soil diazotroph number were systematically monitored as they are markers fertility and health.  

2. Materials and methods  

2.1 Soil analysis 

The experimental loam soil was collected on the top (2–5 cm) of an arable field planted with winter wheat from 
Hebei Province, China. The soil was thoroughly sieved < 2mm, air dried and kept at 4 ºC in refrigerator before 
using. The properties of soil is pH7.2, sand/silt/clay 13.3/70.8/15.9, CEC (cmol kg-1) 7.6, total N (µg g-1) 0.8, 
total organic C (mg g-1)15.4, available P (µg g-1) 13.2, available K (µg g-1) 96.7, field capacity (v/v) 0.32. 

2.2 Preparation of soil with nanoparticle  

Three commercial SNP amorphous powders at ca. 9, 12, 40 nm with > 99.9% purity were obtained from 
Boyugaoke Inc. (Beijing, China). The surface area were 300 ± 30 m2 g-1 (9nm), 200 ± 20 m2 g-1 (12 nm) and 
110 ± 25 m2 g-1 (40nm), respectively. The size of SNP were determined by scanning electron microscopy and 
the surface area of SNP was examined using the BET method.  
SNP were suspended in distilled water and sonicated to achieve a homogeneous mixture before adding to the 
soil samples in a test-microcosm. Each microcosm consisted of 50 g of soil in 200 mL sterile plastic bottles 
and NP mixtures were added to achieve a final concentration of 10, 25, 50 mg kg-1, respectively. Microcosm 
without SNP was used as control. Three triplicates of each microcosm were incubated at 25 ºC for one month 
and soil moisture was adjusted at 25% of water holding capacity by adding sterile deionized water.  

2.3 Microcalorimetric analysis  

An isothermal TAM III multi-channel microcalorimeter (TA instruments, New Castle, DE, USA) was used to 
record the metabolic thermogenetic flux curves. Each 4.0 ml stainless steel ampoule was loaded with 1 g soil 
containing SNP. Then 200 µL nutrient solution containing 5.0 mg glucose and 5.0 mg ammonium sulphate 
was added to the soil. The calorimetric parameters such as total heat output (Qtotal), microbial growth constant 
(k), peak time and the height of peak was calculated from the power-time curves. Qtotal was computed by 
integrating the power-time curves. A classical equation is used to fit the exponential growth phase, lnPt =lnP0 + 
kt, where t is the time, Pt is the output of power at time t, and the P0 is the power at the initial stage of the 
exponential growth (Guo et al., 2012). 

2.4 Measurement of soil enzyme activity and diazotroph counting 

The activity of urease was measured using colorimetric determination of ammonium released from urea 
hydrolysis (Zhuang et al., 2011, Guo et al., 2012). Catalase activity was determined by back-titrating residual 
H2O2 with 0.1 mol L-1 KMnO4 solution (Du et al., 2011). The FDA hydrolytic activity was carried out at 490 nm 
as absorption of the hydrolysis product fluorescein (Schnürer and Rosswall, 1982). Soil samples (5 g) were 
placed in Erlenmeyer flasks containing sterile water for shaking (180 rpm, 30 min) and followed by continuous 
dilutions for plate counting. Viable counts of soil diazotroph were performed on Ashby Mannitol Phosphate 
Agar incubated 28 ºC for 7 days. All bioassays conducted with materials were in accordance with national and 
institutional guidelines for the protection of human subjects and animal welfare. 

3. Results and discussions 

3.1 Dose-size effects of silica nanoparticles  

Figure 1 depicts the thermal output curves of soil samples containing various concentrations and sizes of 
SNP. Two major peaks (Pmax1 at the time Pt1 and Pmax2 at the time Pt2) were observed in the thermograms. 
These peaks showed a tendency to appear at shorter times with the increase in SNP concentration and even 
shorter than the untreated controls. However, no significant differences of Pt were observed by changing size 
of SNP. In general, Pmax1 is smaller than Pmax2. Both Pmax1 and Pmax2 increases with the concentration of SNP. 
SNP is likely to express indirect positive effects on microbial metabolism, acting as a biochemical concentrator 
of substrates at the surface (Dinesh et al., 2012), thus, allowing dormant populations to benefit from the 
enriched surrounding habitat to grow faster than the control. Qtotal increases with the increase in the 
concentration of SNP whereas k does not change much with the increase in dose and size of SNP. The 
average relative values of Pmax1 showed a regular increase with increasing SNP size; Pmax2, even showing 
values higher than Pmax1, also showed a flattening at 9-12 nm and a dropping in the 40 nm test. The percent 
increase of Pmax1 and Pmax2 had the same order of magnitude at 9-12 nm, while at 40 nm size showed an 

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opposite trend, i.e., maximum stimulation at short time Pt1 (8-10 h) and lower metabolic rates at longer Pt2 (30 
h) time, comparatively to the percent increase control.  

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Figure 1: Thermogenesis metabolism curves of soil microorganism spiked with various sized of silica 

nanoparticles: (A) control, (B) 9, (C) 12, and (D) 40 nm 

Kinetics of glucose degradation is proportional to kinetics of microbial growth (Castello et al., 2014). For this 
reason, the microbial growth rate constant k is considered as the apparent degradation rate of the substrate 
(Barja and Núñez, 1999). Therefore, k was regarded as a sensitive parameter expressing minor changes in 
the mean life adaptability of the many microbial populations and in their response to the stressing effects 
caused (Koga et al., 2003). It has been found that generally NP with different sizes caused different 
environmental effects at equivalent concentrations (Gao et al., 2008). This variability in microbial activities of 
the soil might have been caused by superoxide and other reactive oxygen species (Yang et al., 2010). SNP 
were found to exhibit size-dependent toxicity toward the alga (Fujiwara et al., 2008). It also has been 
demonstrated that the cytotoxicity of SNP with the same morphology was strongly related to the particle size 
(Napierska et al., 2009). Most of studies have proved that metal oxide NP display effect of size-dependent 
effectiveness and efficiency on bacteria (Ma et al., 2013). 

3.2 Enzymatic activities 

Soil enzyme activity is considered as direct indicators of the soil community to metabolic demand and 
available nutrients. It has been argued that maintaining critical functions may ultimately be more important 
than maintaining taxonomic diversity in soil microbial communities (Caldwell, 2005). Urease activity in soil 
originated from soil microbes containing urease and approximately 17-77 % soil bacteria and 78-98 % soil 
fungi have capacity to hydrolyze urea into ammonia. Table 1 displays the effect of SNP on the soil urease 
activity. It is found that the soil urease activity significantly (p < 0.05) increases with increase concentration of 
SNP but to a lesser extent with the increase in particle size. The highest urease activity was found in 
coincidence of the highest SNP dose and size, contrarily to the trend observed for the thermodynamic 
parameters Pmax2. It seems that the soil catalase activity does not affect too much by the dose of SNP (p > 
0.05). There is also not much difference in the soil catalase activity for difference sizes of SNP. Since catalase 
is not affected by the size and dose of SNP, it could be a good candidate for assessing oxidation–reduction 
potential of stressed soils. By the contrast, FDA is significantly stimulated by SNP concentration (p < 0.01) at 
all sizes. FDA shows higher activity with the increase in the concentration of SNP. The trends are similar for 
each type of SNP. At 10 mg kg-1 SNP, the effect is very small and is not significantly different (p > 0.05) from 
that of the control. Our results are different to that of ZnO NP which can inhibit soil protease, catalase, 
dehydrogenase, phosphatase and peroxidase (Du et al., 2011, Kim et al., 2011).  

3.3 Viable counting of soil diazotroph  
Soil diazotroph plays a critical role in the nitrogen enrichment for plant growth as promoters of nitrogen fixation 
and stimulators of the nitrogen cycle in soils, which is also a good criterion for assessing soil ecosystem 
quality and plant health. These bacteria can contribute to 10-50 % of the total N requirement of wheat 

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(Kennedy and Islam, 2001). Figure 3 depicts the effect of SNP on soil diazoroph. The colony forming units of 
soil diazotroph are not affected by the SNP. There is no sign of inhibition or stimulation effect of SNP in terms 
of size and concentration on the number of diazotroph bacteria. However, other soils contaminated with ZnO 
and TiO2 NP resulted in the reduction of N-fixation capacity of soils N-fixing microorganisms (Priester et al., 
2012). Several studies reported other NP show inhibition effect on the N-cycling bacteria and N-fixation rate of 
aquatic organism (Yang et al., 2013). It is obvious that our SNP do not exhibit inhibition effect on the soil 
microbes which are different from other types of NP. 

Table 1: Effect of silica nanoparticles on the soil enzyme activities (A) urease, (B) catalase and (C) FDA 

hydrolysis (Urease, mg NH4+-N g-1soil 24 h-1; Catalase, mL KMnO4 g-1 soil 0.5 h-1; FDA Hydrolysis, mg 
Fluorescein g

-1
 soil 0.5 h

-1
) 

   Size control 10 mg kg-1  25 mg kg-1    50 mg kg-1 

 9 nm 
0.98 

0.97 1.03 1.18 
Urease 12 nm 1.03 1.08 1.17 

 40 nm 1.18 1.20 1.25 

      
 9 nm 

1.14 
1.14 1.17 1.23 

Catalase 12 nm 1.13 1.16 1.19 

 40 nm 1.13 1.18 1.22 

      
 9 nm 

13.01 

13.74 16.25 19.65 
FDA 
Hydrolysis 12 nm 13.44 19.27 20.58 

  40 nm 14.28 18.48 19.86 

9nm 12nm 40nm

0

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 control     10 mg kg

1
  25 mg kg

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Figure 3:  Effect of silica nanoparticles on the soil diazotroph 

4. Conclusion 

Microcalorimetry and biomarkers of metabolic processes related to soil fertility, i.e., urease, catalase, FDA, 
and diazotroph are used to estabilsh an efficient and fast screening methodology for NP. The reason for 
strengthening microcalorimetry with additional biomarkers, arises from the general knowledge and the wide 
scientific consensus that the total thermal effect observed under microcalorimetric tests is the result of the 
catabolic degradation of a substrate with little anabolic reactions contribute to the final state of equilibrium. The 
combination of easily executable, efficient and reproducible analytical tests such as the enzymatic assays and 
microcalorimetric analysis that gives a continuous and longer monitoring of the metabolic processes, are very 
promising for revealing many and still unknown reasons of microbial biomass activity and structure. Such 
methodology, before being systematically applied in many agro-ecosystems, must be affined and validated on 
a wide range of cultivated and uncultivated soils. It has been demonstrated that the effect of SNP is strongly 
related to the dose and particle size but smaller SNP only showed minor effects.  

Acknowledgments 

Financial supports from the International Joint Key Project of the Chinese Ministry of Science and Technology 

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(2010DFB23160), International Joint Key Project of the National Natural Science Foundation of China 
(40920134003), National Natural Science Foundation of China (41273092), Overseas, Hong Kong and Macau 
Young Scholars Collaborative Research Fund (41328005), and National Outstanding Youth Research 
Foundation of China (40925010) are gratefully acknowledged. 

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