# bib

id: ddj-104
author: Pitkanen, Matti
title: One Step Closer to Understanding the Origins of Life
date: 2016
extension: .htm
mime: application/xhtml+xml
words: 115
sentence: 4
flesch: 39
cache: cache/ddj-104.htm
txt: txt/ddj-104.txt
summary:
  To verify subscription, access previous purchase, or purchase article, log in to journal. Login DNA Decipher Journal Open Journal Systems Journal Help Subscription Login to verify subscription Give a gift subscription User Username Password Remember me Notifications View Subscribe Journal Content Search Search Scope All Authors Title Abstract Index terms Full Text Browse By Issue By Author By Title Other Journals Font Size ~ Advertisements Hot Products at Amazon Information For Readers For Authors For Librarians Home About Login Register Search Current Archives Home > Login Login Subscription or article purchase required to access item.


id: ddj-170
author: Pitkanen, Matti
title: Multilocal Viruses
date: 2020
pages: 4
extension: .pdf
mime: application/pdf
words: 2047
sentence: 108
flesch: 50
cache: cache/ddj-170.pdf
txt: txt/ddj-170.txt
summary:
  2 TGD based model for multi-local viruses One can start by asking why the multi-partitioning implying modular reproduction (something analogous to that in industry!)? ISSN: 2159-046X DNA Decipher Journal www.www.dnadecipher.com Published by QuantumDream, Inc. http://tgdtheory.fi/public_html/articles/heffselforg.pdf http://tgdtheory.fi/public_html/articles/heffselforg.pdf http://tgdtheory.fi/public_html/articles/bioexamples.pdf http://tgdtheory.fi/public_html/articles/zeoquestions.pdf http://tgdtheory.fi/public_html/articles/zeoquestions.pdf Introduction TGD based model for multi-local viruses


id: ddj-49
author: Pitkanen, Matti
title: Introduction
date: 2013
pages: 4
extension: .pdf
mime: application/pdf
words: 2301
sentence: 145
flesch: 39
cache: cache/ddj-49.pdf
txt: txt/ddj-49.txt
summary:
  Abstract This second series of articles are devoted to TGD inspired ideas related to biological evolution. In the third article a general vision about biological evolution, evolution of brain, and cultural evolution is discussed.


id: ddj-95
author: Tertyshniy, G. G.; Gariaev, Peter P.; Leonova, E. A.
title: Polarization-Holographic Processes in Biosystems
date: 2015
pages: 11
extension: .pdf
mime: application/pdf
words: 2538
sentence: 148
flesch: 55
cache: cache/ddj-95.pdf
txt: txt/ddj-95.txt
summary:
  For simplification we will consider that non-stationary LCCC is not a function of the frequency of translucent light Expressing in (8) Stokes’ parameters via pA, pB, gA ,gB [8], for holograms’ matrix represented as a sum of the three matrices, in the whole range of active frequencies we will get: (9) where M0 – matrix describing non-diffracted beams; (10) M-1 – matrix describing virtual image; (11) with matrix elements DNA Decipher Journal | December 2015 | Volume 5 | Issue 3 | pp. 195-205 Tertyshniy, G. G., Gariaev, P. P. & Leonova, E. A., Polarization-Holographic Processes in Biosystems ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 200 M+1 – matrix describing real image (12) with matrix elements Here mij≡mij(x0,y0,z0,t0) – elements, depending on coordinates and time of the 2D matrix of non-stationary LCCC fragment.


id: ddj-144
author: Pitkanen, Matti
title: New Support for the View on Cambrian Explosion Being Caused by Rapid Increase of Earth Radius
date: 2018
pages: 5
extension: .pdf
mime: application/pdf
words: 2906
sentence: 153
flesch: 46
cache: cache/ddj-144.pdf
txt: txt/ddj-144.txt
summary:
  Stem cells to not however tolerate oxygen. The proposal of the authors is that the evolution of the capacity to maintain stem cells even in an oxic environment allowed the animals to keep stocks of stem cells needed for tissue growth and repair for that this required at gene level new genes coding for so called HIFs.


id: ddj-207
author: Pitkanen, Matti
title: Some Mysteries of the Biological Evolution from the TGD Point of View
date: 2025
pages: 8
extension: .pdf
mime: application/pdf
words: 4372
sentence: 258
flesch: 54
cache: cache/ddj-207.pdf
txt: txt/ddj-207.txt
summary:
  Phosphorus-rich grains in Ryugu samples with major biochemical potential. In this framework one can understand why Ryugu can contain life forms resembling those on Earth.


id: ddj-36
author: Campbell, Robert W.
title: Part I: A Critique of River Out of Eden: On Winning by Cheating
date: 2012
pages: 8
extension: .pdf
mime: application/pdf
words: 5091
sentence: 250
flesch: 62
cache: cache/ddj-36.pdf
txt: txt/ddj-36.txt
summary:
  The distance is communicated by the rate of a peeping sound the dancer bee makes, perhaps combined with its rate of turning and waggle. Before going on let’s examine Dawkins position closely again.


id: ddj-41
author: Campbell, Robert W.
date: 2012
extension: .htm
mime: application/xhtml+xml
words: 115
sentence: 4
flesch: 39
cache: cache/ddj-41.htm
txt: txt/ddj-41.txt
title:
  Part II: An Intelligent Face to Evolution: The Invertebrates - Exploring Sensory-motor Routines in Space and Time

summary:
[cell repeats an earlier one in this file: 644 characters]


id: ddj-119
author: Vary, Alex
title: Fibonacci Sunflowers, Mathematical Objects & Cubic Electrons
date: 2017
pages: 10
extension: .pdf
mime: application/pdf
words: 4224
sentence: 194
flesch: 50
cache: cache/ddj-119.pdf
txt: txt/ddj-119.txt
summary:
  Applications of Fibonacci numbers include computer algorithms such as the Fibonacci search technique and the Fibonacci heap data structure. Fibonacci numbers also appear in biological settings such as branching in trees, the arrangement of leaves on a stem, the fruit sprouts of a pineapple, the arrangement of a pine cone's bracts, and prominently in sunflower seed patterns.


id: ddj-17
author: Pitkanen, Matti
title: Oil Droplets in Water as a Primitive Life Form
date: 2011
pages: 11
extension: .pdf
mime: application/pdf
words: 6474
sentence: 364
flesch: 51
cache: cache/ddj-17.pdf
txt: txt/ddj-17.txt
summary:
  In this article a model for oil droplets as a primitive life form is developed on basis of TGD inspired quantum model of biology. In particular, a proposal for how dark genes could couple to chemistry of oil droplets is developed.


id: ddj-112
author: Pitkanen, Matti
title: Combinatorial Hierarchy: Two Decades Later
date: 2016
pages: 6
extension: .pdf
mime: application/pdf
words: 3344
sentence: 207
flesch: 56
cache: cache/ddj-112.pdf
txt: txt/ddj-112.txt
summary:
  One interpretation is that the space of Boolean statements at given level is imbeddable to the space of quantum Boolean maps at previous level. A possible interpretation of the map would be that the statements at given level M(n+ 1) must be representable as theorems at previous level M(n).


id: ddj-204
author: Pitkanen, Matti
title: Morphogenesis, Self-Replicating Robot & Tessellation in TGD View
date: 2023
pages: 7
extension: .pdf
mime: application/pdf
words: 3943
sentence: 221
flesch: 57
cache: cache/ddj-204.pdf
txt: txt/ddj-204.txt
summary:
  For electrons this gives Egr(Sun, e) = 1.8 µeV. For the energy transfer in photosynthesis, the energy of the solar photon cannot therefore correspond to the change of gravitational binding energy in the case of electrons. What comes to mind are dark unpaired valence electron states of atoms in which the heff of an unpaired electron increases so that binding energy is scaled down by 1/h2 eff .


id: ddj-9
title: Exploration of Wavegenetics & Wave Immunity
date: 2011
extension: .htm
mime: application/xhtml+xml
words: 115
sentence: 4
flesch: 39
cache: cache/ddj-9.htm
txt: txt/ddj-9.txt
author:
  Gariaev, Peter; Kokaya, A. A.; Leonova-Gariaeva, E. A.; Muldashev, E. R.; Smelov, M. V.; Tertishny, G. G.; Ustinova, N. V.

summary:
[cell repeats an earlier one in this file: 644 characters]


id: ddj-209
author: Pitkanen, Matti
title: Updated View on the Rice Experiments of Masaru Emoto
date: 2025
pages: 12
extension: .pdf
mime: application/pdf
words: 7673
sentence: 426
flesch: 55
cache: cache/ddj-209.pdf
txt: txt/ddj-209.txt
summary:
  The dark genes would be dynamical unlike the ordinary genes and dark bioharmony would only correspond to the transition energies of DNA only during control and communications. The first guess is that the emotional state is represented by 3N-chords defining a bioharmony and identified as dark proton triplets, dark genetic codons.


id: ddj-42
author: Campbell, Robert W.
date: 2012
pages: 19
extension: .pdf
mime: application/pdf
words: 11100
sentence: 534
flesch: 52
cache: cache/ddj-42.pdf
txt: txt/ddj-42.txt
title:
  Part II: An Intelligent Face to Evolution: The Vertebrates - Exploring Knowledge of Emotive Behavior

summary:
  As higher mammals we are attuned not only to private aspirations which influence human affairs, but also to the energies of other species with whom we share the biosphere, while sharing also a common basis to emotive experience through our limbic ancestry. The bilateral polarization of human brain function was well under way, with the energies of limbic reptilian and mammalian ancestors being refined anew.


id: ddj-151
author: Pitkanen, Matti
title: Thoughts on Modification of Bio-harmony
date: 2018
pages: 9
extension: .pdf
mime: application/pdf
words: 6157
sentence: 337
flesch: 61
cache: cache/ddj-151.pdf
txt: txt/ddj-151.txt
summary:
  For bio-harmony obtained as union of 3 icosahedral harmonies and tetrahedral harmony note typically belongs to 15 chords. For bio-harmony obtained as union of 3 icosahedral harmonies and tetrahedral harmony note typically belongs to 15 chords.


id: ddj-64
author: Smetham, Graham P.
title: List of References Cited in this Focus Issue
date: 2013
pages: 3
extension: .pdf
mime: application/pdf
words: 994
sentence: 101
flesch: 69
cache: cache/ddj-64.pdf
txt: txt/ddj-64.txt
summary:
  Higgs: The Invention and Discovery of the 'God Particle', Oxford University Press. Coyne, J. (2009), Why Evolution is True, Oxford University Press (2010 edition).


id: ddj-184
author: Hu, Huping; Wu, Maoxin
title: Iona Miller (1949 - 2021): Multitalented Writer, Artist & Visionary
date: 2021
pages: 2
extension: .pdf
mime: application/pdf
words: 622
sentence: 33
flesch: 54
cache: cache/ddj-184.pdf
txt: txt/ddj-184.txt
summary:
  [she served] on the Advisory Boards of Journal of Consciousness Exploration & Research, DNA Decipher Journal, and Scientific God Journal....” Microsoft Word - HuWu2_V11N1 DNA Decipher Journal | October 2021 | Volume 11 | Issue 1 | pp 107-108 Hu, H. & Wu, M., Iona Miller (1949 - 2021): Multitalented Writer, Artist & Visionary ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 107 In Memoriam Iona Miller (1949 - 2021): Multitalented Writer, Artist & Visionary Huping Hu* & Maoxin Wu ABSTRACT Iona Miller (1949 - 2021) was a multitalented writer, artist and visionary.


id: ddj-1
author: Hu, Huping; Wu, Maoxin
title: Decipherment of the Secrets of DNA
date: 2011
pages: 10
extension: .pdf
mime: application/pdf
words: 3764
sentence: 174
flesch: 57
cache: cache/ddj-1.pdf
txt: txt/ddj-1.txt
summary:
  Original-Review-Letter-Invited Article DNA Decipher Journal | January 2011 | Vol. 1 Thus, when in late November 2010, Peter Gariaev and Matti Pitkanan submitted a DNA related paper to the Journal of Consciousness Exploration & Research (http://jcer.com) which does not cover research on DNA, it was decided to launch DNA Decipher Journal in order to provide a platform and fair playing field for exploring many mysteries associated with DNA.


id: ddj-72
author: Pitkanen, Matti
title: Pollack's Findings about Fourth Phase of Water: TGD Point of View
date: 2014
pages: 8
extension: .pdf
mime: application/pdf
words: 4769
sentence: 237
flesch: 51
cache: cache/ddj-72.pdf
txt: txt/ddj-72.txt
summary:
  2 Dark nuclei and Pollack’s findings While listening the lecture of Pollack I realized that a model for dark water in term of dark proton sequences is enough to explain the properties of the exotic water according to experiments done in the laboratory of Pollack. Metabolism would mean burning of the resulting blobs of dark water to ordinary water leading to the loss of charge separation.


id: ddj-124
author: Pitkanen, Matti
title: Life-like Properties Observed in a Very Simple System (Part I)
date: 2017
pages: 17
extension: .pdf
mime: application/pdf
words: 11528
sentence: 611
flesch: 61
cache: cache/ddj-124.pdf
txt: txt/ddj-124.txt
summary:
  Dark cyclotron radiation with heff/h = n could transform to ordinary photons with energy, which is n-multiple of ordinary cyclotron energy. Cyclotron energies are in turn proportional to heff .


id: ddj-183
author: Hu, Huping; Wu, Maoxin
title: Peter P. Gariaev (1942 - 2020): Discoverer of Phantom DNA Effect & Founder of “Wave Genetics”
date: 2021
pages: 3
extension: .pdf
mime: application/pdf
words: 993
sentence: 37
flesch: 43
cache: cache/ddj-183.pdf
txt: txt/ddj-183.txt
summary:
  Gariaev, P. P., Vlasov, P. P., Poltavtseva, R. A., Voloshin, L. L., & Leonova-Gariaeva, E. A. (2018), A Case Report of Tooth Regeneration in Dog through Wave Genetics, DNA Decipher Journal, 8(3): pp. Gariaev, P. P., Vladychenskaya, I. P., & Leonova, E. A. (2016), PCR Amplification of Phantom DNA Recorded as Potential Quantum Equivalent of Material DNA, DNA Decipher Journal, 6(1): pp. 01-11.


id: ddj-44
author: Pitkanen, Matti
title: Introduction
date: 2013
pages: 4
extension: .pdf
mime: application/pdf
words: 2281
sentence: 148
flesch: 40
cache: cache/ddj-44.pdf
txt: txt/ddj-44.txt
summary:
  This has profound implications: for instance topological light rays parallel to magnetic flux tubes make possible precisely target communications with maximal signal velocity and without dispersion. The modular structure of genome could be understood if genes are accompanied by magnetic flux tubes carrying also helical electric fields and electronic supra currents: this implies a direct connection with the TGD based explanation of DC currents of Becker [14].


id: ddj-202
author: Pitkanen, Matti
title: Neil Gersching's Vision of Self-Replicating Robots from TGD Viewpoint
date: 2023
pages: 15
extension: .pdf
mime: application/pdf
words: 9192
sentence: 527
flesch: 53
cache: cache/ddj-202.pdf
txt: txt/ddj-202.txt
summary:
  [22] Pitkänen M. TGD view of the engine powering jets from active galactic nuclei. [30] Pitkänen M. TGD view about water memory and the notion of morphogenetic field .


id: ddj-78
author: Pitkanen, Matti
title: Pythagoras, Music, Sacred Geometry and Genetic Code
date: 2014
pages: 20
extension: .pdf
mime: application/pdf
words: 11677
sentence: 607
flesch: 59
cache: cache/ddj-78.pdf
txt: txt/ddj-78.txt
summary:
  The number of amino acids N associated with a given degeneracy d telling the number of DNA triplets mapped to the amino acid in the genetic code. Biology, neuroscience, and consciousness [4] Amino acid.


id: ddj-177
author: Amoroso, Richard L.; Rowlands, Peter
title: Algebraic and Geometric Representations of the Genetic Code
date: 2021
pages: 10
extension: .pdf
mime: application/pdf
words: 2706
sentence: 133
flesch: 61
cache: cache/ddj-177.pdf
txt: txt/ddj-177.txt
summary:
  Figure 2. codons representations The amino acids coded can be represented as follows: DNA Decipher Journal | October 2021 | Volume 11 | Issue 1 | pp 01-10 Amoroso, R. L. & Rowlands, P., Algebraic and Geometric Representations of the Genetic Code ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 8 Figure 3. ij i –iki –ikj –ikk –ij –i One way of generating the 64 units is by taking the product of 4 options × 4 options × 4 options, as is done in the case of the genetic code, where each of three bases may be U (or T), G, A or C. To represent this algebraically, we may use the vector units i, j, k and 1 for the options U, G, A DNA Decipher Journal | October 2021 | Volume 11 | Issue 1 | pp 01-xx Amoroso, R. L. & Rowlands, P., Algebraic and Geometric Representations of the Genetic Code ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 3 and C for the first base.


id: ddj-158
author: Pitkanen, Matti
title: An Overall View about Models of Genetic Code & Bio-harmony
date: 2019
pages: 21
extension: .pdf
mime: application/pdf
words: 13032
sentence: 721
flesch: 63
cache: cache/ddj-158.pdf
txt: txt/ddj-158.txt
summary:
  For the unique Z6 harmony and 3 Z2,rot (table 3 of Appendix) of harmonies common chords can be avoided by shifting the latter harmonies by a half-note. The only difference would be that only the second - active - strand would form U-shaped flux tubes connecting with dark RNA codons.


id: ddj-132
author: King, Chris
title: The Resplendence Codex: Reflowering Apocalypse in the Tree of Life (Part III)
date: 2017
pages: 24
extension: .pdf
mime: application/pdf
words: 11478
sentence: 402
flesch: 39
cache: cache/ddj-132.pdf
txt: txt/ddj-132.txt
summary:
  4. Transcendence versus Deity: Transcendence is not manifest in the monotheistic God or other deities, which are projections of human nature and transcendence into imaginary personalities in heavenly and hellish domains. Such reproductive control of the female to ensure patriarchal reproductive imperatives has been an almost universal feature of world religions for millennia.


id: ddj-89
author: Pitkanen, Matti
title: More Precise TGD Based View about Quantum Biology and Prebiotic Evolution (Part I)
date: 2015
pages: 18
extension: .pdf
mime: application/pdf
words: 11949
sentence: 599
flesch: 52
cache: cache/ddj-89.pdf
txt: txt/ddj-89.txt
summary:
  Dark nuclear binding energy is liberated as dark photons decaying into bunches of ordinary photons inducing further reactions 2H2O→ H3O − 2 + dark proton also other kind of dark ionizations. Similar chain reaction could have taken place also in prebiotic circumstances, where lightnings could have provided the initiating photons and perhaps also dark photons in dark nuclear binding energy range decaying to visible photons initiating the process.


id: ddj-102
author: Christianto, Victor; Umniyati, Yunita
title: On the Plausible Implications of Gariaev & Montagnier’s Work: Omne Vivum ex Vivo via Crebritudo?
date: 2016
pages: 5
extension: .pdf
mime: application/pdf
words: 1830
sentence: 124
flesch: 62
cache: cache/ddj-102.pdf
txt: txt/ddj-102.txt
summary:
  DNA Decipher Journal | June 2016 | Volume 6 | Issue 2 | pp. = 𝐹 (7) In addition, the following two versions of the perturbed SGE have been studied in the literature, including: DNA Decipher Journal | June 2016 | Volume 6 | Issue 2 | pp.


id: ddj-23
author: King, Chris
title: The Future of Christian Religion in the Genetic Age
date: 2012
pages: 23
extension: .pdf
mime: application/pdf
words: 14102
sentence: 463
flesch: 49
cache: cache/ddj-23.pdf
txt: txt/ddj-23.txt
summary:
  In a strange echo, in supposedly taking up John's mantle, (although the Baptist's surviving Sabean followers in Southern Iraq vehemently disclaim Jesus teachings), Jesus also died anointed to his burial by a woman variously claimed to be Mary of Bethany and/or Magdalen and a 'sinner' caught in adultery. The brief Epistle of James does not state it is written by James the Just, but simply a servant of God and of the Lord Jesus Christ, to the twelve tribes, although Christian writers do attribute it to him.


id: ddj-121
author: Vary, Alex
title: Origin & Modulation of DNA Life Cycles
date: 2017
pages: 22
extension: .pdf
mime: application/pdf
words: 10966
sentence: 477
flesch: 47
cache: cache/ddj-121.pdf
txt: txt/ddj-121.txt
summary:
  But all this is may be a form of 'patching' with an awakening knowledge the 'source code' that originated human DNA. The Genetic Code The recursively complex DNA code structure - which is common to all species - is designed to DNA Decipher Journal | July 2017 | Volume 7 | Issue 1 | pp.


id: ddj-137
author: Pitkanen, Matti
title: TGD Views on the Roles of Lithium, Phosphate & Posner Molecule in Quantum Biology
date: 2018
pages: 9
extension: .pdf
mime: application/pdf
words: 5485
sentence: 310
flesch: 54
cache: cache/ddj-137.pdf
txt: txt/ddj-137.txt
summary:
  Posner molecule would be a carrier of phosphate qubits giving rise to (working) quantum-memory realized in terms of entangled Posner molecules. In this essay, I compare the work of Fisher proposing that phosphate ion and calcium phosphate known as Posner molecule are fundamental for quantum neuroscience.


id: ddj-31
author: Campbell, Robert W.
title: Evolution as Manifestation of Cosmic Order
date: 2012
pages: 3
extension: .pdf
mime: application/pdf
words: 1415
sentence: 79
flesch: 54
cache: cache/ddj-31.pdf
txt: txt/ddj-31.txt
summary:
  DNA Decipher Journal | November 2012 | Volume 2 | Issue 3 | pp. 210-212 Campbell, R., Evolution as Manifestation of Cosmic Order ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 211 endow a greater survival advantage leading to a natural selection of those mutations, and consequently to the emergence and adaptation of new species according to environmental pressures. His idea was that small heritable changes over a long period of time can endow a survival advantage in a process of natural selection that can lead to new species.


id: ddj-114
author: Pitkanen, Matti
title: Are Lithium, Phosphate & Posner Molecule Fundamental for Quantum Biology?
date: 2016
pages: 5
extension: .pdf
mime: application/pdf
words: 2945
sentence: 169
flesch: 52
cache: cache/ddj-114.pdf
txt: txt/ddj-114.txt
summary:
  Posner molecule would be a carrier of phosphate qubits giving rise to (working) quantum-memory realized in terms of entangled Posner molecules. In this article I compare the work of Fisher proposing that phosphate ion and calcium phosphate known as Posner molecule are fundamental for quantum neuroscience.


id: ddj-126
author: Pitkanen, Matti
title: Potential "Missing Link" in Chemistry that Led to Life on Earth Discovered
date: 2017
pages: 6
extension: .pdf
mime: application/pdf
words: 3366
sentence: 170
flesch: 48
cache: cache/ddj-126.pdf
txt: txt/ddj-126.txt
summary:
  The TGD based interpretation should rely on the possibility of dark valence electrons and dark protons at flux tubes. Could the emergence of dark electrons allow their delocalization and formation of valence bonds?


id: ddj-57
author: Smetham, Graham P.
date: 2013
extension: .htm
mime: application/xhtml+xml
words: 115
sentence: 4
flesch: 39
cache: cache/ddj-57.htm
txt: txt/ddj-57.txt
title:
  Why Materialists’ Evolution is False: Jerry Coyne Short-Changes the Public with a Far from True Account of Evolution

summary:
[cell repeats an earlier one in this file: 644 characters]


id: ddj-59
author: Smetham, Graham P.
title: Brief Biography of Graham P. Smetham
date: 2013
pages: 2
extension: .pdf
mime: application/pdf
words: 560
sentence: 20
flesch: 47
cache: cache/ddj-59.pdf
txt: txt/ddj-59.txt
summary:
  Graham has written three more books: The Grand Designer: Discovering the Quantum Mind Matrix of the Universe, Quantum Buddhist Wonders of the Universe and Quantum Buddhism and the Higgs Discovery: The Power of Emptiness. 383-384 383 Brief Biography Graham Smetham, B.A., studied Mathematics at Essex University, England and Philosophy of Religion at Sussex University.


id: ddj-2
author: Gariaev, Peter; Friedman, Mark J.; Leonova-Gariaeva, Ekaterina A.
title: Principles of Linguistic-Wave Genetics
date: 2011
pages: 14
extension: .pdf
mime: application/pdf
words: 5313
sentence: 266
flesch: 53
cache: cache/ddj-2.pdf
txt: txt/ddj-2.txt
summary:
  Original-Review-Letter-Invited Article DNA Decipher Journal | January 2011 | Vol. 1 DNA Decipher Journal | January 2011 | Vol. 1 | Issue 1 | pp.


id: ddj-139
author: Pitkanen, Matti
title: On the Correspondence of Dark Nuclear Genetic Code & Ordinary Genetic Code
date: 2018
pages: 18
extension: .pdf
mime: application/pdf
words: 11855
sentence: 674
flesch: 56
cache: cache/ddj-139.pdf
txt: txt/ddj-139.txt
summary:
  At this step the replication of both dark and ordinary RNA was lost and it seems that dark DNA- DNA pairs replicating dark DNA and transcribing it to dark RNA and inducing corresponding process at the level of chemistry must have emerged at the same time. This is also essential for the pairing of DNA and dark DNA and also for the pairing of say dark DNA and dark RNA.


id: ddj-62
author: Smetham, Graham P.
title: Soul Dust or a Matter of Mind: The Mindless Ideas of Nicholas Humphrey
date: 2013
pages: 38
extension: .pdf
mime: application/pdf
words: 19611
sentence: 699
flesch: 50
cache: cache/ddj-62.pdf
txt: txt/ddj-62.txt
summary:
  However if you go back to the quote on page 81 where Humphrey talks of the need to describe “phantasms”, which are phenomenal- sensations involving consciousness, more like brain-states one find that he has identified the experience of pain as “the activity of reaching out to the body surface in a painy way.” According to Humphrey consciousness is just so remarkable that an unwary brain might be tempted to think consciousness is really real.


id: ddj-190
author: Pitkanen, Matti
title: Water Oxidation & Photosynthesis in TGD Framework
date: 2022
pages: 7
extension: .pdf
mime: application/pdf
words: 3827
sentence: 209
flesch: 54
cache: cache/ddj-190.pdf
txt: txt/ddj-190.txt
summary:
  These dark nuclei would have dramatically reduced binding energy and increased spatial scale making it possible to overcome the Coulomb barrier. The outcome of this process would be a reduction of the scale of valence electron binding energies and of bond energies.


id: ddj-29
author: Sidorov, Lian; Chen, Kevin
title: Biophysical Mechanisms of Genetic Regulation: Is There a Link to Mind-Body Healing?
date: 2012
pages: 29
extension: .pdf
mime: application/pdf
words: 13955
sentence: 799
flesch: 50
cache: cache/ddj-29.pdf
txt: txt/ddj-29.txt
summary:
  Molecular biology study for the effect of qigong - outgoing qi with labeled biochemical factors on human body cancer cells the BEL - 7402 and SPC - A1; 7-th Int Sym on Qigong, Shanghai, China. These studies also show that such effects can be produced from great distances, and that occasionally they are accompanied by unusual energy signatures.


id: ddj-188
author: Pitkanen, Matti
title: Horizontal Gene Transfer by Remote Replication?
date: 2022
pages: 18
extension: .pdf
mime: application/pdf
words: 10526
sentence: 677
flesch: 53
cache: cache/ddj-188.pdf
txt: txt/ddj-188.txt
summary:
  The model of water memory involves dark DNA [19] [27, 30] assignable to the ordinary DNA and also the dark variants of other biomolecules can be involved. [46] Pitkänen M. New results about dark DNA inspired by the model for remote DNA replication.


id: ddj-69
author: Gariaev, Peter P.
title: The Essence of Linguistic & Wave Genetics in Theory and Practice
date: 2014
pages: 9
extension: .pdf
mime: application/pdf
words: 4745
sentence: 331
flesch: 55
cache: cache/ddj-69.pdf
txt: txt/ddj-69.txt
summary:
  QB will be capable of the following functions of bio-computation: a) reading wave of genetic information from chromosomes and cell tissue; b) scanning for converting (recording information) laser photons modulated wide-spectrum electromagnetic radiation (mShEI) keeping received primary photon of genetic information; c) wave broadcasting genetic information at macro distances; d) the introduction of genetic information in mShEI form the body of the recipient in its intracellular water; and e) programmable managment and corrections of metabolism, physiology of the recipient, such as a patient or the old man. QB is capable of the following functions bio-computation - a) reading wave of genetic information from chromosomes and cell tissue, b) scanning for converting (recording information) laser photons modulated wideband electromagnetic radiation (mShEI) keeping received primary photon of genetic information, and c) wave broadcast genetic information at macro distances, d) the introduction of genetic information in mShEI form the body of the recipient in its intracellular water, e) programmable management correction metabolism, physiology of the recipient, such as a patient or the old man.


id: ddj-167
author: Pitkanen, Matti
title: Darwinian or Neutral Theory of Evolution or Something Else?
date: 2020
pages: 6
extension: .pdf
mime: application/pdf
words: 3655
sentence: 198
flesch: 51
cache: cache/ddj-167.pdf
txt: txt/ddj-167.txt
summary:
  Neutral evolution theory was proposed by Morita 50 years ago and gained a lot of support because of its simplicity. Ordinary genome is its secondary repre- sentation and its dynamics is induced from that of dark genome: this view is inspired by the TGD based model for Pollack effect.


id: ddj-79
author: Pitkanen, Matti
title: Music, Biology & Natural Geometry (Part I)
date: 2014
pages: 28
extension: .pdf
mime: application/pdf
words: 18995
sentence: 1011
flesch: 64
cache: cache/ddj-79.pdf
txt: txt/ddj-79.txt
summary:
  The direction of step matters for scales (major-minor difference) and it seems to matter also for chord harmonies. The notion of chord harmony does not apply as such to polyphonic music with several simultaneous melodies unless on can say that it involves definite chord sequence.


id: ddj-10
author: Miller, Iona; Miller, Richard A.; Webb, Burt
title: Quantum Bioholography
date: 2011
pages: 27
extension: .pdf
mime: application/pdf
words: 14563
sentence: 765
flesch: 49
cache: cache/ddj-10.pdf
txt: txt/ddj-10.txt
summary:
  Original-Review-Letter-Invited Article DNA Decipher Journal | March 2011 | Vol. 1 Superposed coherent waves of different types in the cells interact to DNA Decipher Journal | March 2011 | Vol. 1


id: ddj-87
author: King, Chris
title: Evolution, Sexual Reproduction & the Future of Human Society (Part I)
date: 2015
pages: 16
extension: .pdf
mime: application/pdf
words: 7836
sentence: 273
flesch: 46
cache: cache/ddj-87.pdf
txt: txt/ddj-87.txt
summary:
  The evidence from our own sexual evolution suggests that the large tumescent human penis, which differs from the more voluntary muscular boned penises of apes has been selected as a genuine indicator of fitness by human female reproductive choice, and that the ecstatically orgasmic clitoris, perpetual sexual receptiveness, expanded fatty breasts and hour-glass torso indicating nubile fecundity, concealed estrus making it hard for a male to know when a female is ovulating, and lunar phased menstrual synchrony are human features of sexual selection demonstrating the key role of female reproductive choice and female coalitions in the emergence of Homo sapiens as a super-intelligent culture-forming species. Center: Muslim women are required to cover themselves, sometimes including their eyes and entire face, because Muslim culture fears unveiled women are too sexually attractive (Eid news).


id: ddj-65
author: Smetham, Graham P.
title: Brief Biography of Graham P. Smetham
date: 2013
pages: 2
extension: .pdf
mime: application/pdf
words: 578
sentence: 20
flesch: 47
cache: cache/ddj-65.pdf
txt: txt/ddj-65.txt
summary:
  540-541 Smetham, G. P., Brief Biography of Graham P. Smetham 540 Brief Biography Graham Smetham, B.A., studied Mathematics at Essex University, England and Philosophy of Religion at Sussex University. Graham has written three more books: The Grand Designer: Discovering the Quantum Mind Matrix of the Universe, Quantum Buddhist Wonders of the Universe and Quantum Buddhism and the Higgs Discovery: The Power of Emptiness.


id: ddj-19
author: Smetham, Graham P.
title: Quantum Evo-Devo Universe II: Materialists’ Metaphoric Phantoms of Matter in Mind
date: 2011
pages: 32
extension: .pdf
mime: application/pdf
words: 16681
sentence: 557
flesch: 46
cache: cache/ddj-19.pdf
txt: txt/ddj-19.txt
summary:
  In his recent book Quantum Reality: Theory and Philosophy Jonathan Allday, in a section he entitles ‘Substance Abuse’, tells us that within quantum field theory, at the lowest level so to speak, there is no substance, the quantum field is actually ‘empty’ of substance. 32 Another fundamental feature of quantum field theory is that fields are said to capable of creating and destroying quantum states; mathematically this is represented by creation and DNA Decipher Journal | November 2011 | Vol. 1


id: ddj-99
author: Smetham, Graham P.
title: Why Us: Trespassing on an Anthropic Lawn (Part I)
date: 2016
pages: 32
extension: .pdf
mime: application/pdf
words: 16055
sentence: 632
flesch: 49
cache: cache/ddj-99.pdf
txt: txt/ddj-99.txt
summary:
  The phenomenon of the ‘collapse of the wavefunction’ is not necessarily evidence that all sentient beings are individually creating reality by beaming single rays of consciousness, so to speak, at quantum wavefunctions, but, rather, it indicates that a deep level of primordial consciousness is operating through the community of sentient beings of all levels of consciousness in order to “create” the process of reality. Rosenblum and Kuttner are physicists who have no doubt about the connection between consciousness and the quantum ground of reality: Consciousness and the quantum enigma are not just two mysteries; they are the two mysteries; first, our physical demonstration of the quantum enigma, faces us with the fundamental mystery of the objective world ‘out there;’ the second, conscious awareness, faces us with the fundamental mystery of the subjective, mental world ‘in here.’


id: ddj-172
author: Fiscaletti, David
date: 2020
extension: .htm
mime: application/xhtml+xml
words: 115
sentence: 4
flesch: 39
cache: cache/ddj-172.htm
txt: txt/ddj-172.txt
title:
  The Quantum Potential & the Bell Length of the 3D Quantum Vacuum as the Parameters Generating the Avian Compass

summary:
[cell repeats an earlier one in this file: 644 characters]


id: ddj-192
author: Pitkanen, Matti
title: Molecular Signaling from the TGD Viewpoint
date: 2022
pages: 23
extension: .pdf
mime: application/pdf
words: 10215
sentence: 632
flesch: 60
cache: cache/ddj-192.pdf
txt: txt/ddj-192.txt
summary:
  It would seem that bio-harmony appears as an additional aspect of the ligand-receptor pairing involving geometric constraints modelled in terms of lock-key or induced-fit mechanisms. The nteraction between ligand magnetic bodies would be re-tuning and could replace the preferred bio-harmonies assignable to the participating ligands with distributions of bio-harmonies.


id: ddj-173
author: Fiscaletti, David
title: Perspectives on the Origin of Life in Exoplanets as a Phenomenon Generated by a 3D Quantum Vacuum
date: 2020
pages: 16
extension: .pdf
mime: application/pdf
words: 9260
sentence: 320
flesch: 45
cache: cache/ddj-173.pdf
txt: txt/ddj-173.txt
summary:
  However, if one considers atmospheric escape driven by the stellar wind [31] as well other constraints (e.g. stellar ultraviolet radiation and lifetime) which can be incorporated in a similar fashion [32], the relative likelihood of life may be expressed as: � ≈ � �⋆�⨀� � �⋆�⨀� (4) where � denote the corresponding luminosity of the planet. if the lifetime of the planet’s atmosphere is less than the timescale of atmospheric loss for unmagnetized planets, and through the following equation: b) � = 8�� ⎝ ⎜⎛ ℏ$U$$V∆W*+,∇$X01ℏY�O� ⎠ ⎟⎞� uo������ ���x�$��u�⨁!��,�� �| ⋆�| ⨀!


id: ddj-106
author: Pitkanen, Matti
title: Progress on the Notion of Magnetic Body & Metabolism in TGD Framework
date: 2016
pages: 5
extension: .pdf
mime: application/pdf
words: 2667
sentence: 140
flesch: 51
cache: cache/ddj-106.pdf
txt: txt/ddj-106.txt
summary:
  The photon energy could be feeded directly to OP electron transport chain just as photon energy is transferred to this chain in photosynthesis. The finding that GUT cells without any mitochondria can survive leads to a concrete cell level model for remote metabolism based on sending of negative energy photons to a energy storage.


id: ddj-75
author: King, Chris
date: 2014
extension: .htm
mime: application/xhtml+xml
words: 115
sentence: 4
flesch: 39
cache: cache/ddj-75.htm
txt: txt/ddj-75.txt
title:
  The Tree of Life: Tracing the Genetic Pathway from the Last Universal Common Ancestor to Homo Sapiens (Part II)

summary:
[cell repeats an earlier one in this file: 644 characters]


id: ddj-45
author: Pitkanen, Matti
title: Many-sheeted DNA: Basic Ideas
date: 2013
pages: 19
extension: .pdf
mime: application/pdf
words: 12386
sentence: 700
flesch: 58
cache: cache/ddj-45.pdf
txt: txt/ddj-45.txt
summary:
  This leads obviously to spatial patterns of gene expression resulting from branching of gene programs. Especially difficult challenge for the view about life as mere chemistry is the interaction between large length scales with gene level making possible precise timing of genetic activity.


id: ddj-86
author: Pitkanen, Matti
title: A Possible Quantum Control Mechanism in TGD-inspired Biology
date: 2015
pages: 4
extension: .pdf
mime: application/pdf
words: 2286
sentence: 126
flesch: 53
cache: cache/ddj-86.pdf
txt: txt/ddj-86.txt
summary:
  This also leads to an identification of quantum bio-control mechanism based on the variation of the thickness of magnetic flux tubes inducing by flux conservation the variation of field strength controlling quantum critical currents flowing along the flux tubes. Quantum criticality corresponds to a situation in which Landau orbits emerges as an orbit at the surface of the magnetic flux tube and should lead to generation of large heff phases if TGD based view about quantum criticality holds true.


id: ddj-32
author: Campbell, Robert W.
title: Part I: A Critique of River Out of Eden: Introduction
date: 2012
pages: 4
extension: .pdf
mime: application/pdf
words: 1968
sentence: 110
flesch: 61
cache: cache/ddj-32.pdf
txt: txt/ddj-32.txt
summary:
  Richard Dawkins is the author of a number of popular books including The Blind Watchmaker In Part One of this series of articles, we will be examining scientific biases that are currently favored in evolution theory.


id: ddj-91
author: Pitkanen, Matti
title: Are there Direct Evidence for Dark DNA?
date: 2015
pages: 5
extension: .pdf
mime: application/pdf
words: 2794
sentence: 181
flesch: 58
cache: cache/ddj-91.pdf
txt: txt/ddj-91.txt
summary:
  The number of dark tRNAs is 64 and the pairings between dark mRNA and dark anticodons and dark anticodons and dark amino-acids are 1-to-1 and only the pairing between dark RNA codons and anticodons in tRNA is many-to-1. 2. 2 Could transcription transform dark DNA to dark mRNA? Also the TGD based notion of dark DNA comes in mind


id: ddj-101
author: Pitkanen, Matti
title: On Magnetic Body, Bio-harmonies, Morphogenesis & Epigenetics
date: 2016
pages: 9
extension: .pdf
mime: application/pdf
words: 5933
sentence: 336
flesch: 46
cache: cache/ddj-101.pdf
txt: txt/ddj-101.txt
summary:
  In TGD based model for musical harmony DNA codons would correspond quite concretely to 3-chords but played using dark photons (also ordinary music represented as sounds could be transformed to dark photon music). Abstract In TGD, magnetic body is an intentional agent using biological body as a sensory receptor and motor instrument.


id: ddj-38
author: Campbell, Robert W.
title: Part I: A Critique of River Out of Eden: Our Celestial Prison
date: 2012
pages: 14
extension: .pdf
mime: application/pdf
words: 8190
sentence: 359
flesch: 56
cache: cache/ddj-38.pdf
txt: txt/ddj-38.txt
summary:
  All the variety of jobs that Hank does are form level work, that we might better call functional work in the case of a business. He has had to further delegate the personnel function at the functional level, and he has also had to appoint a Plant Superintendent responsible for supervisory level work in the Operations Department, with plant foremen, maintenance foremen, scheduling, quality control inspection, and cost accounting, all at the functional level reporting to this superintendent.


id: ddj-154
author: Smith, Stephen P.
title: A Possible Holarchy Representing Morphic Resonance as One Side of the Poised Realm
date: 2019
pages: 9
extension: .pdf
mime: application/pdf
words: 3820
sentence: 155
flesch: 53
cache: cache/ddj-154.pdf
txt: txt/ddj-154.txt
summary:
  Holarchy and Time A set of holons, nested in other holons, are represented by Figure 1, and showing collectively the holarchy at one snap-shot in time (the present moment). Table 1 represents the poised realm as a particle/wave duality in the present moment that is set to forward time, but also showing itself polarized in forward time and backward time.


id: ddj-81
author: Christianto, Victor; Umniyati, Yunita
title: A Graphic Plot for a Soliton Solution of Sine-Gordon model of DNA
date: 2014
pages: 4
extension: .pdf
mime: application/pdf
words: 1026
sentence: 80
flesch: 69
cache: cache/ddj-81.pdf
txt: txt/ddj-81.txt
summary:
  It belongs to nonlinear model of DNA which is close to realistic model. It belongs to nonlinear model of DNA which is close to realistic model.


id: ddj-211
author: Pitkanen, Matti
title: New Findings Related to the Chiral Selection
date: 2025
pages: 7
extension: .pdf
mime: application/pdf
words: 3958
sentence: 271
flesch: 42
cache: cache/ddj-211.pdf
txt: txt/ddj-211.txt
summary:
  [15] Pitkänen M. TGD and condensed matter physics. This would generalize the chiral selection from the level of biomolecules to the level of dark monopole flux tubes.


id: ddj-160
author: Pitkanen, Matti
title: Some Applications of TGD Inspired Quantum Biology: Biochemistry, Metabolism & Replication
date: 2019
pages: 10
extension: .pdf
mime: application/pdf
words: 5869
sentence: 379
flesch: 45
cache: cache/ddj-160.pdf
txt: txt/ddj-160.txt
summary:
  Therefore ordinary codons rather than nucleotides should serve as basic units in energy resonance binding them to dark codons (triple resonance or ordinary resonance with respect to the sum of resonance energies). In order to generate phases with non-standard value of heff energy feed is needed.


id: ddj-55
author: Smetham, Graham P.
date: 2013
pages: 58
extension: .pdf
mime: application/pdf
words: 28965
sentence: 1112
flesch: 52
cache: cache/ddj-55.pdf
txt: txt/ddj-55.txt
title:
  Dawkins’ Darwinism Part I: Evolution – The Greatest Illusion on Earth and the New Quantum Platonic Paradigm

summary:
  70 In other words Albert is pointing out that it is not the case that the universe emerged from ‘nothing’ because quantum fields are a kind of ‘physical’ stuff, although quantum field ‘physical’ stuff is actually immaterial and consists of quantum potentiality. These objects are the “fields” of quantum field theory.


id: ddj-67
author: Gariaev, et. al., Peter P.
title: Materialization of DNA Fragment in Water through Modulated Electromagnetic Irradiation
date: 2014
pages: 2
extension: .pdf
mime: application/pdf
words: 651
sentence: 32
flesch: 55
cache: cache/ddj-67.pdf
txt: txt/ddj-67.txt
summary:
  Key Words: DNA synthesis, DNA fragment, phantom, wave genetics, modulation, electromagnetic irradiation. We present a preliminary report on the materialization of DNA fragment in pure water in the presence of its phantom delivered by modulated wide-spectrum electromagnetic irradiation.


id: ddj-116
author: Pitkanen, Matti
title: Steps towards Understanding of the Origins of Life
date: 2017
pages: 5
extension: .pdf
mime: application/pdf
words: 3013
sentence: 178
flesch: 54
cache: cache/ddj-116.pdf
txt: txt/ddj-116.txt
summary:
  In TGD superdense phase has interpretation as dark proton sequences at magnetic flux tubes with the Compton length of dark proton coded by heff/h ' 211 to electron’s Compton length The proposal is that in formamide is the unique amide, which can form stable bound states with dark protons and crucial for the development of life as dark matter- visible matter symbiosis.


id: ddj-135
author: Pitkanen, Matti
title: Homonymy of the Genetic Code from TGD Point of View
date: 2018
pages: 21
extension: .pdf
mime: application/pdf
words: 14097
sentence: 776
flesch: 64
cache: cache/ddj-135.pdf
txt: txt/ddj-135.txt
summary:
  Dark genetic code would be realized in ters of dark proton sequences - to be denoted by DDNA, DmRNA, DtRNA, and DAA - would provide dark analogs of DNA, mRNA, tRNA, and AA. Dark code would dictate what happens at the chemical level.


id: ddj-140
author: Pitkanen, Matti
title: Getting Philosophical: On the Problems in Physics, Neuroscience & Biology
date: 2018
pages: 16
extension: .pdf
mime: application/pdf
words: 10059
sentence: 607
flesch: 52
cache: cache/ddj-140.pdf
txt: txt/ddj-140.txt
summary:
  If so, the process would transcribe from dark DNA dark RNA and translate from dark RNA and dark tRNA AA and dark DNA. DNA molecules would have emerged through pairing with dark DNA molecules.


id: ddj-25
author: Miller, Iona
title: Novel Approaches to Genomic Science: Retrieval & Curation
date: 2012
pages: 26
extension: .pdf
mime: application/pdf
words: 11283
sentence: 503
flesch: 37
cache: cache/ddj-25.pdf
txt: txt/ddj-25.txt
summary:
  -- (Polyani, 1962, cited in Moustakis, 1990) * Correspondence: Iona Miller E-Mail: iona_m@yahoo.com mailto:iona_m@yahoo.com DNA Decipher Journal | May 2012 | Vol. 2 | Issue 2 | pp. (Southwick, 2012) DNA Decipher Journal | May 2012 | Vol. 2


id: ddj-12
author: Smetham, Graham P.
title: Quantum Evo-Devo Universe: Quantum Evolution and the Evidence of Evolutionary-Developmental Biology
date: 2011
pages: 40
extension: .pdf
mime: application/pdf
words: 19283
sentence: 598
flesch: 39
cache: cache/ddj-12.pdf
txt: txt/ddj-12.txt
summary:
  This scenario involves the possibility that vast ages prior to the Cambrian, for instance, would at that time only be quantum processes, a viewpoint which is consistent with the Hawking-Mlodinow meta- physical vision of the evolution of the universe and its inhabitants. Issue 8), underlies Edelman‟s „neural Darwinism‟ as well as biological evolution over time, in the latter context it finds its most explicitly developed formulation in Rupert Sheldrake‟s proposal of the functioning of quantum morphogenetic fields.


id: ddj-179
author: Pitkanen, Matti
title: Homeostasis as Self-organized Quantum Criticality
date: 2021
pages: 18
extension: .pdf
mime: application/pdf
words: 11211
sentence: 698
flesch: 56
cache: cache/ddj-179.pdf
txt: txt/ddj-179.txt
summary:
  There is evidence for large change ∆Cp of heat capacity Cp (Cp = dE/dT for pressure changing feed of heat energy) for formation ion nucleotide-CSP fusion [Christopher et al]. The number of DFs is infinite and this implies that when one heats this kind of system, the temperature grows slowly since heat energy excites new DFs.


id: ddj-5
author: King, Chris
date: 2011
pages: 37
extension: .pdf
mime: application/pdf
words: 12631
sentence: 586
flesch: 49
cache: cache/ddj-5.pdf
txt: txt/ddj-5.txt
title:
  The Tree of Life: Tangled Roots and Sexy Shoots: Tracing the genetic pathway from the first Eukaryotes to Homo sapiens

summary:
  DNA Decipher Journal | January 2011 | Vol. 1 | Issue 1 | pp. Fig 2: The initial tree of rRNAs shows three distinct founding domains (Woese 1987) DNA Decipher Journal | January 2011 | Vol. 1


id: ddj-197
author: Pitkanen, Matti
title: Expanding Earth Hypothesis and Pre-Cambrian Earth
date: 2023
pages: 12
extension: .pdf
mime: application/pdf
words: 6906
sentence: 416
flesch: 62
cache: cache/ddj-197.pdf
txt: txt/ddj-197.txt
summary:
  81-92 83 Pitkänen, M., Expanding Earth Hypothesis and Pre-Cambrian Earth The analogy between recent Mars and pre-Cambrian Earth suggests that the Earth had only a single core analogous to the recent inner core which is solid and consists mostly of Fe and Ni. The leakage of molecules in CE Earth was not as intense as in Mars today since the gravitational field was 10 times stronger than in Mars.


id: ddj-15
author: Pitkanen, Matti; Gariaev, Peter
title: Quantum Model for Remote Replication
date: 2011
pages: 10
extension: .pdf
mime: application/pdf
words: 6545
sentence: 356
flesch: 54
cache: cache/ddj-15.pdf
txt: txt/ddj-15.txt
summary:
  Water would be living in the sense that it contains ”dark DNA” and dark DNA might allow remote transcription to ordinary DNA sequences in presence of ordinary DNA codons (triplets) and vice versa. 4.2 Frequency coding for DNA sequences by the value of Planck constant as a realization of divisor code The realization of dark magnetic bodies of polar molecules in terms of dark nucleon sequences allows to understand the association of dark DNA with ordinary DNA, RNA, and


id: ddj-165
author: Pitkanen, Matti
title: Cosmic String Model for Formation of Galaxies, & DNA Structure
date: 2020
pages: 23
extension: .pdf
mime: application/pdf
words: 14831
sentence: 808
flesch: 58
cache: cache/ddj-165.pdf
txt: txt/ddj-165.txt
summary:
  One however ask whether the volume filling property of flux tube could effectively freeze the vibrational degrees of flux tubes. The model predicts also the possibility of neutral states for which electrons are at flux tubes parallel to dark proton flux tubes and have the same scaled up size (due to non-standard value of heff = nh0, which is smaller by factor about 1/2000) as dark protons.


id: ddj-186
author: Pitkanen, Matti
title: The Hen & Egg Problems of Biology from TGD Viewpoint
date: 2022
pages: 14
extension: .pdf
mime: application/pdf
words: 8830
sentence: 544
flesch: 55
cache: cache/ddj-186.pdf
txt: txt/ddj-186.txt
summary:
  This picture makes it possible to formulate a more precise view about the model of cell membrane as a generalized Josephson junction for which the generalized Josephson energy for charge Ze is the sum EJ = ZeV + ∆Ec of ordinary Josephson energy ZeV and difference ∆Ec of dark cyclotron energies for the flux tubes at the two sides of the cell membrane having in general different strengths of magnetic field. Lipids however have C-C bonds with bond energy 3.47 eV and C==C bonds with energy 6.28 eV. These energies are in the UV range.


id: ddj-21
author: King, Chris
title: Biocosmology: Part I
date: 2012
pages: 35
extension: .pdf
mime: application/pdf
words: 14822
sentence: 626
flesch: 44
cache: cache/ddj-21.pdf
txt: txt/ddj-21.txt
summary:
  Such generic structures include the polymeric structure of proteins and nucleic acids, nucleotide coenzymes, bilayer membrane structure and the topological closure of the cell, ion transport and membrane excitability, membrane-bound electron transport, glycolysis and the citric acid cycle. This results in phase bifurcation dividing the medium into polar (aqueous) and non-polar phases in association with low-entropy water bonding structures induced around non-polar molecules.


id: ddj-142
author: Pitkanen, Matti
title: New Results in the Model of Bioharmony
date: 2018
pages: 17
extension: .pdf
mime: application/pdf
words: 11264
sentence: 639
flesch: 60
cache: cache/ddj-142.pdf
txt: txt/ddj-142.txt
summary:
  Could the same hold true in evolution so that RNA triplets would have come first as entities pairing with dark RNA codons from from dark proton triplets as a whole? Later DNA codons would have emerged and paired with dark DNA codons.


id: ddj-128
author: King, Chris
title: What Is Resplendence?
date: 2017
pages: 3
extension: .pdf
mime: application/pdf
words: 1628
sentence: 51
flesch: 38
cache: cache/ddj-128.pdf
txt: txt/ddj-128.txt
summary:
  Resplendence transcends religion, by providing untramelled direct first-person avenues towards enlightenment, complementing the objective science of the physical world with the subjective science of consciousness research - a true discovery process of conscious meaning and existence, so that human society can discover the deeper inner dimensions of conscious experience, fully exploring the conscious realms that religions aspire to in a way we can verify in the first person, through our own discoveries, engaging meditative and contemplative vigils and the agency of entheogenic species to make a voyage of discovery together, complementing scientific discovery of the physical world, with a living account of our evolving collective experience, without depending on second or third-hand religious doctrines to distort the nature and integrity of the first-person contemplative condition. We now know beyond all doubt from molecular genetics that life has evolved from single celled organisms to bootstrap itself into conscious organisms, who in our case can ponder our fates and wonder at the enormity and sheer depth in complexity of the universe of which we are a part.


id: ddj-74
author: King, Chris
date: 2014
pages: 17
extension: .pdf
mime: application/pdf
words: 5081
sentence: 181
flesch: 32
cache: cache/ddj-74.pdf
txt: txt/ddj-74.txt
title:
  The Tree of Life: Tracing the Genetic Pathway from the Last Universal Common Ancestor to Homo Sapiens (Part I)

summary:
  DNA Decipher Journal | October 2014 | Volume 4 | Issue 2 | pp. phylogenomic study of protein domain structure in the proteomes of 420 free-living fully sequenced organisms.


id: ddj-149
author: Smith, Stephen P.
title: Time, Life & the Emotive Source
date: 2018
pages: 15
extension: .pdf
mime: application/pdf
words: 7634
sentence: 315
flesch: 50
cache: cache/ddj-149.pdf
txt: txt/ddj-149.txt
summary:
  Epigenetics is not limited by the DNA modulation, however, because something epigenetic may be on top of DNA modulation, and something may be on top of that.11 At any rate, the backward in time window is closely matches 11 Lipton (2005, Chapter 3) describes proteins that are embedded in the cell membrane, and act as information gates that relate to the outside environment and also impact on epigenetic signals inside DNA Decipher Journal | November 2018 | Volume 8 | Issue 3 | pp 166-180 Smith, S. P., Time, Life & the Emotive Source ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 174 with the frequency domain that characterizes time series analysis. DNA Decipher Journal | November 2018 | Volume 8 | Issue 3 | pp 166-180 Smith, S. P., Time, Life & the Emotive Source ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 170 among genetic drift, genetic recombination, mutation and the survival instinct that’s innate in life.


id: ddj-40
author: Campbell, Robert W.
date: 2012
pages: 11
extension: .pdf
mime: application/pdf
words: 6369
sentence: 306
flesch: 58
cache: cache/ddj-40.pdf
txt: txt/ddj-40.txt
title:
  Part II: An Intelligent Face to Evolution: Plant - Exploring the Spatial Forms of the Eukaryotic Cell

summary:
  The emphasis here is on the task cycles of plant cells rather than on product cycles of host plants with highly differentiated organs. Form-routine: The routines essential to evolving higher plant forms on land required the development of vertical support with an efficient vascular system to transport nutrients between roots, trunk and top structure.


id: ddj-53
author: Pitkanen, Matti
title: Evolution in Many-Sheeted Space-Time: Big Vision
date: 2013
pages: 23
extension: .pdf
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summary:
  For instance, r = 247 required by 5 Hz Josephson frequency gives dark weak scale which corresponds k = 136 as a p-adic scale. In this case the hierarchy of dark scales assignable to quarks and leptons is much richer.


id: ddj-166
author: Smith, Stephen P.
title: Pitch Inverted Songs as Affirmation of Panpsychism Based on a Theoretical Mirror Universe
date: 2020
pages: 12
extension: .pdf
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summary:
  ♭♭ # # # -9 or +3 +9 or -3 ♭♭♭ # # # # -4 or +8 +4 or -8 ♭♭♭♭ # # # # # -11 or +1 +11 or -1 ♭♭♭♭♭ # # # # # # -6 or +6 +6 or -6 ♭♭♭♭♭♭ # # # # # #


id: ddj-130
author: King, Chris
title: The Resplendence Codex: Reflowering Apocalypse in the Tree of Life (Part I)
date: 2017
pages: 24
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summary:
  158-181 King, C., The Resplendence Codex: Reflowering Apocalypse in the Tree of Life (Part I) ISSN: 2159-046X DNA Decipher Journal Published by QuantumDream, Inc. www.dnadecipher.com 164 One of our oldest founding cultures, the San Bushmen, whose genetic history dates back 130,000 years, have a creator deity, a lesser god of misfortune and notions of the afterlife not dissimilar from those in major world religions, although they regard these gods philosophically rather than in fear and supplication: ≠Gao!na, the ! Thus the principal power and sheer population size of major world religions stems not form transcendental insight but fearsome moral and frequently physical punishment.


id: ddj-60
author: Smetham, Graham P.
title: Quantum Genes[?]: Bell’s Theorem, Quantum Entanglement, Consciousness & Evolution
date: 2013
pages: 24
extension: .pdf
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summary:
  Abstract The supporters of the hardcore materialist MUD worldview tend to consider, without actually thinking too much (if at all), that anyone involved in scientifically investigating the nature of quantum reality and its relationship to the ‘observer’ as being so irredeemably infected with what these ‘rationalists’ call ‘woo’ that they should not be taken seriously. Unfortunately, however, the supporters of the hardcore materialist MUD (Materialist Ultra- Darwinian) worldview tend to consider, without actually thinking too much (if at all), that anyone involved in scientifically investigating the nature of quantum reality and its relationship to the ‘observer’ as being so irredeemably infected with what these ‘rationalists’ call ‘woo’ that they should not be taken seriously.


id: ddj-34
author: Campbell, Robert W.
title: Part I: A Critique of River Out of Eden: The Digital Adam and Eve
date: 2012
pages: 8
extension: .pdf
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summary:
  Genes must be good at working cooperatively with other genes of the species, it is maintained, while at the same time maintaining that they compete with other genes. It stops even though science implicitly acknowledges that genes are hierarchically ordered, that some genes control other genes that in turn control others.


id: ddj-162
author: Pitkanen, Matti
title: Could Mars Have Intra-planetary Life?
date: 2019
pages: 5
extension: .pdf
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summary:
  Also Mars would have magnetic field but it would contain only the part for which flux tubes carry monopole flux so that no currents would be required to maintain it. The model explains why the magnetic field has not been detected but explains the mysterious finding that auroras requiring the presence of magnetic field appear also in Mars.


id: ddj-96
author: Pitkanen, Matti
title: Why Information Molecules Containing Aromatic Rings Should Be so Important?
date: 2015
pages: 7
extension: .pdf
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flesch: 50
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summary:
  This makes molecules with aromatic rings basic conscious entities in living matter. The model for cell membrane as Josephson junction leads at the microscopic level to the view that the proteins associated with various ion pumps, channels, and receptors (of also neurotransmitters in postsynaptic junction) define Josephson junctions to which magnetic flux tubes are associated and characterized by local value of Josephson frequency, that is membrane potential and Planck constant heff .


id: ddj-134
author: King, Chris
title: Resurrection & Resplendence
date: 2017
pages: 12
extension: .pdf
mime: application/pdf
words: 6429
sentence: 182
flesch: 38
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summary:
  Gravity then binds matter to form galaxies, stars and planetary systems, resulting in the garden of eden scenario of a net free energy input from each star onto the planetary surfaces of its solar system, resulting ultimately in biogenesis, the evolution of complex life and consciousness within the biota ultimately driven by photosynthetic energy. I have worked for many years of my life as a university academic, teaching mathematics, with a research interest in chaos theory, but my central scientific interests ad discoveries have been in the cosmological foundations for the origin of life and consciousness in the universe.


id: ddj-47
author: Pitkanen, Matti
title: A Model for Protein Folding and Biocatalysis
date: 2013
pages: 31
extension: .pdf
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summary:
  Note that the O = atom of the amino-acid is in a special role in that it can have hydrogen bond flux tubes to donors and flux tube connections with O =:s of other amino-acids, the residues of amino-acids containing acceptors (say O = or aromatic ring), and with the aromatic rings of say ATP. 4. If one identifies hydrogen bond with flux tube (Y (n) = Z(n + k))


id: ddj-110
author: Pitkanen, Matti
title: Can Quantum Biology Really Do without New Physics?
date: 2016
pages: 16
extension: .pdf
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summary:
  RPM has been observed in laboratory only for magnetic fields in the range 1 mT-10 T. Earth’s magnetic field is only 2 per cent of the lower bound so that it is quite possible that RPM is not at work. The response to magnetic fields in the range around 3 Gauss (6 times the strength of BE = .5 Gauss) was found to be slowing down of the circadian clock.


id: ddj-194
author: Pitkanen, Matti
title: Quantum Gravitation & Topological Quantum Computation
date: 2022
pages: 32
extension: .pdf
mime: application/pdf
words: 20391
sentence: 1132
flesch: 56
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txt: txt/ddj-194.txt
summary:
  A highly attractive idea is that TQC programs can be constructed as functional composites of polynomials giving rise to extensions of extensions of .... and inclusion hierarchies of corresponding Galois groups, each defining a normal subgroup of its sup-group. Galois groups as symmetry groups represent new physics and the natural questions are whether Galois groups could give rise to number theoretic variants of anyons and what could the TGD counterparts of the condensed matter (effective) Majorana electrons proposed by Kitaev as anyon like states?


id: ddj-103
author: Pitkanen, Matti
title: On the Representations of Genetic Code by Dark Nuclear Strings in TGD Framework
date: 2016
pages: 18
extension: .pdf
mime: application/pdf
words: 12077
sentence: 654
flesch: 58
cache: cache/ddj-103.pdf
txt: txt/ddj-103.txt
summary:
  For this option one could consider the strands of dark DNA double strand being connected by flux tube pairs resulting when U-shaped color flux tube have reconnected. A possible explanation is that codons and anticodons are paired by U-shaped flux tubes associated with the color bonds of dark DNA to form color singlets.


id: ddj-6
author: Pitkanen, Matti
title: DNA as Topological Quantum Computer: Part I
date: 2011
pages: 36
extension: .pdf
mime: application/pdf
words: 24171
sentence: 1247
flesch: 50
cache: cache/ddj-6.pdf
txt: txt/ddj-6.txt
summary:
  Also DNA double strand for which sugar-phosphate backbone consists of XMPs, X= A,T,C,G containing negentropy carrying phosphate bonds can be seen as analogous to conscious brain with DNA strands representing right and left hemispheres. The braiding between DNA strands with each nucleotide defining one strand transversal to DNA realized in terms of magnetic flux tubes was my first bet for the representation of space-like braiding in living matter.


id: ddj-206
author: Pitkanen, Matti
date: 2025
extension: .htm
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words: 115
sentence: 4
flesch: 39
cache: cache/ddj-206.htm
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title:
  Quartz Crystals as a Life Form & Ordinary Computers as an Interface between Quartz Life & Ordinary Life

summary:
[cell repeats an earlier one in this file: 644 characters]


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  https://tgdtheory.fi/public_html/articles/precns.pdf https://tgdtheory.fi/public_html/articles/precns.pdf https://tgdtheory.fi/public_html/articles/krebs.pdf https://tgdtheory.fi/public_html/articles/krebs.pdf


id: ddj-211
sid: 252
eid: 4
type: ORG
entity:
  https://tgdtheory.fi/tgdhtml/bpadphys.html https://tgdtheory.fi/tgdhtml/bpadphys.html https://tgdtheory.fi/pdfpool/leptc.pdf https://tgdtheory.fi/pdfpool/leptc.pdf https://tgdtheory.fi/tgdhtml/btgdgeom.html https://tgdtheory.fi/pdfpool/cspin.pdf https://tgdtheory.fi/pdfpool/cspin.pdf https://tgdtheory.fi/public_html/articles/valenceheff.pdf https://tgdtheory.fi/public_html/articles/heffselforg.pdf https://tgdtheory.fi/public_html/articles/heffselforg.pdf https://tgdtheory.fi/public_html/articles/m8h1.pdf https://tgdtheory.fi/public_html/articles/m8h1.pdf


id: ddj-211
sid: 254
eid: 1
type: PRODUCT
entity:
  pdf https://tgdtheory.fi/public_html/articles/penrose.pdf https://tgdtheory.fi/public_html/articles/penrose.pdf


id: ddj-74
sid: 54
eid: 1
type: PERSON
entity:
  http://www.dhushara.com/book/unraveltree/unravel.htm#anchor-leipe-14210 http://www.dhushara.com/book/unraveltree/unravel.htm#anchor-leipe-14210 http://www.dhushara.com/book/unraveltree/unravel.htm#anchor-leipe-14210 http://www.dhushara.com/book/unraveltree/unravel.htm#anchor-viral-14210


id: ddj-179
sid: 610
eid: 1
type: ORG
entity:
  http://tgtheory.fi/public_html/articles/mont.pdf http://tgtheory.fi/public_html/articles/mont.pdf http://tgdtheory.fi/public_html/articles/remotetesla.pdf http://tgtheory.fi/public_html/articles/harmonytheory.pdf http://tgtheory.fi/public_html/articles/harmonytheory.pdf


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eid: 2
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  http://tinyurl.com/zn98vka http://tinyurl.com/zn98vka https://tinyurl.com/yc3hx4uu https://tinyurl.com/ybaj3mcj https://tinyurl.com/ybkw5qnb https://tinyurl.com/ybkw5qnb http://tgtheory.fi/pdfpool/wcwnew.pdf http://tgtheory.fi/public_html/articles/hierarchies.pdf


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eid: 4
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  http://tgdtheory.fi/public_html/articles/mars.pdf http://tgdtheory.fi/public_html/articles/mars.pdf http://tgdtheory.fi/public_html/articles/darkcore.pdf http://tgdtheory.fi/public_html/articles/darkcore.pdf http://tgdtheory.fi/public_html/articles/zeoquestions.pdf


id: ddj-21
sid: 88
eid: 1
type: ORG
entity:
  http://www.dhushara.com/biocrisis/11/oct/superhabitable.pdf http://www.dhushara.com/biocrisis/11/oct/lifespread.pdf http://www.dhushara.com/biocrisis/11/oct/cometplanet.pdf


id: ddj-21
sid: 88
eid: 2
type: PERSON
entity:
  http://www.dhushara.com/book/quantcos/planets/billions_of_earths.pdf http://www.dhushara.com/biocrisis/10/feb/cool_find.pdf


id: ddj-60
sid: 441
eid: 1
type: QUANTITY
entity:
  407 1 http://whyevolutionistrue.wordpress.com/2012/02/15/alex-tsakiris-woomeister-and-coward/ 2 http://www.skeptiko.com/161-outspoken-atheist-jerry-coyne/ 3 http://en.wikipedia.org/wiki/anton_zeilinger 4


id: ddj-60
sid: 457
eid: 1
type: DATE
entity:
  35 http://www.popsci.com/science/article/2010-06/quantum-entanglement-may-hold-dna-together-new-study-says 36


id: ddj-142
sid: 565
eid: 1
type: PERSON
entity:
  http://tgdtheory.fi/public_html/genememe/genememe.html#dnatqccodes http://tgdtheory.fi/public_html/tgdlian/tgdlian.html#biophotonslian http://tgdtheory.fi/public_html/tgdlian/tgdlian.html#biophotonslian


id: ddj-142
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  http://tgdtheory.fi/public_html/neuplanck/neuplanck.html#qcritdark http://tgdtheory.fi/public_html/genememe/genememe.html#hgrprebio http://tgdtheory.fi/public_html/articles/harmonytheory.pdf


id: ddj-142
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eid: 1
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entity:
  http://tgdtheory.fi/public_html/articles/homonymy.pdf http://tgdtheory.fi/public_html/articles/homonymy.pdf


id: ddj-110
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eid: 1
type: PERSON
entity:
  http://tgdtheory.fi/public_html/genememe/genememe.html#hgrprebio http://tgdtheory.fi/public_html/tgdquantum/tgdquantum.html#diagrams


id: ddj-140
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eid: 4
type: PERSON
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  http://www.tgdtheory.fi/public_html/tgdquantum/tgdquantum.html#twistquestions http://www.tgdtheory.fi/public_html/tgdquantum/tgdquantum.html#twistquestions http://tgdtheory.fi/public_html/articles/harmonytheory.pdf http://tgdtheory.fi/public_html/articles/harmonytheory.pdf


id: ddj-140
sid: 590
eid: 1
type: ORG
entity:
  http://tgdtheory.fi/public_html/articles/homonymy.pdf http://tgdtheory.fi/public_html/articles/homonymy.pdf http://tgdtheory.fi/public_html/articles/morphotgd.pdf http://tgdtheory.fi/public_html/articles/morphotgd.pdf http://tgdtheory.fi/public_html/articles/zeocriticality.pdf http://tgdtheory.fi/public_html/articles/harmonynew.pdf http://tgdtheory.fi/public_html/articles/harmonynew.pdf


id: ddj-103
sid: 441
eid: 3
type: TIME
entity:
  http://tinyurl.com/kp3sdlm http://tinyurl.com/kp3sdlm http://tinyurl.com/kp3sdlm https://en.wikipedia.org/wiki/biomolecule


id: ddj-103
sid: 614
eid: 2
type: ORG
entity:
  quantumdream, inc. http://tgdtheory.fi/public_html/articles/pollackyoutube.pdf http://tgdtheory.fi/public_html/articles/pollackyoutube.pdf http://tgdtheory.fi/public_html/articles/cfagain.pdf http://tgdtheory.fi/public_html/articles/cfagain.pdf http://tgdtheory.fi/public_html/articles/purineorigin.pdf http://tgdtheory.fi/public_html/articles/purineorigin.pdf http://tgdtheory.fi/public_html/articles/padicgeom.pdf http://tgdtheory.fi/public_html/articles/holmilidnew.pdf http://tgdtheory.fi/public_html/articles/xboson.pdf http://tgdtheory.fi/public_html/articles/xboson.pdf


id: ddj-53
sid: 686
eid: 6
type: DATE
entity:
  http://tgdtheory.com/public_html/genememe/genememe.html#dnatqc http://tgdtheory.com/public_html/genememe/genememe.html#dnatqc


id: ddj-53
sid: 686
eid: 7
type: PERSON
entity:
  http://tgdtheory.com/public_html/magnconsc/magnconsc.html#langsoc http://tgdtheory.com/public_html/magnconsc/magnconsc.html#langsoc


id: ddj-186
sid: 498
eid: 3
type: ORG
entity:
  quantumdream, inc. https://link.springer.com/chapter/10.1007/978-3-319-55612-3_11 https://link.springer.com/chapter/10.1007/978-3-319-55612-3_11 https:/tgdtheory.fi


id: ddj-5
sid: 147
eid: 1
type: ORG
entity:
  http://www.newscientist.com/article/mg20227121.600-has-the-mystery-of-sex-been-explained-at-last.html?full=true dna decipher journal


id: ddj-47
sid: 1036
eid: 6
type: PERSON
entity:
  http://www.pdb.org/pdb/files/11as.pdb http://www.rcsb.org/pdb/files/1bam.pdb http://rebase.neb.com/cgi-bin/seqsget?x55285


id: ddj-194
sid: 955
eid: 3
type: ORG
entity:
  quantumdream, inc. https:/tgdtheory.fi/pdfpool/nmpc.pdf https:/tgdtheory.fi/pdfpool/wcwnew.pdf https:/tgdtheory.fi/pdfpool/wcwnew.pdf https:/tgdtheory.fi/pdfpool/dnatqc.pdf https:/tgdtheory.fi/pdfpool


id: ddj-194
sid: 991
eid: 3
type: ORG
entity:
  quantumdream, inc. https:/tgdtheory.fi/pdfpool/zeo.pdf https:/tgdtheory.fi/pdfpool/zeo.pdf https:/tgdtheory.fi/public_html


id: ddj-194
sid: 1022
eid: 1
type: ORG
entity:
  pdf https://tgdtheory.fi/public_html/articles/precns.pdf https://tgdtheory.fi/public_html/articles/precns.pdf https://tgdtheory.fi/public_html/articles/darkcode.pdf https://tgdtheory.fi/public_html/articles/aging.pdf https://tgdtheory.fi/public_html/articles/aging.pdf


# pos

id: ddj-72
sid: 203
tid: 16
pos: PROPN
token:
  http://www.newscientist.com/article/dn25471-spark-of-lifemetabolism-appears-in-lab-without-cells.html?cmpid=rss|nsns|2012-global|

lemma:
  http://www.newscientist.com/article/dn25471-spark-of-lifemetabolism-appears-in-lab-without-cells.html?cmpid=rss|nsns|2012-global|


id: ddj-197
sid: 382
tid: 18
pos: NOUN
token:
  https://www.researchgate.net/publication/355212207_structure_and_properties_of_two_superionic_ice_phases

lemma:
  https://www.researchgate.net/publication/355212207_structure_and_properties_of_two_superionic_ice_phase


id: ddj-60
sid: 457
tid: 2
pos: VERB
token:
  http://www.popsci.com/science/article/2010-06/quantum-entanglement-may-hold-dna-together-new-study-says

lemma:
  http://www.popsci.com/science/article/2010-06/quantum-entanglement-may-hold-dna-together-new-study-say


