id	sid	tid	token	lemma	pos
ddj-47	1	1	dna	dna	PROPN
ddj-47	1	2	decipher	decipher	PROPN
ddj-47	1	3	journal	journal	NOUN
ddj-47	1	4	|	|	ADV
ddj-47	1	5	may	may	AUX
ddj-47	1	6	2013	2013	NUM
ddj-47	1	7	|	|	ADV
ddj-47	1	8	volume	volume	NOUN
ddj-47	1	9	3	3	NUM
ddj-47	1	10	|	|	NOUN
ddj-47	1	11	issue	issue	VERB
ddj-47	1	12	1	1	NUM
ddj-47	1	13	|	|	ADV
ddj-47	1	14	pp	pp	ADJ
ddj-47	1	15	.	.	PUNCT
ddj-47	2	1	58	58	NUM
ddj-47	2	2	-	-	SYM
ddj-47	2	3	88	88	NUM
ddj-47	2	4	58	58	NUM
ddj-47	2	5	pitkänen	pitkänen	NOUN
ddj-47	2	6	,	,	PUNCT
ddj-47	2	7	m.	m.	NOUN
ddj-47	2	8	,	,	PUNCT
ddj-47	2	9	a	a	DET
ddj-47	2	10	model	model	NOUN
ddj-47	2	11	for	for	ADP
ddj-47	2	12	protein	protein	NOUN
ddj-47	2	13	folding	folding	NOUN
ddj-47	2	14	and	and	CCONJ
ddj-47	2	15	biocatalysis	biocatalysis	NOUN
ddj-47	2	16	article	article	NOUN
ddj-47	2	17	a	a	DET
ddj-47	2	18	model	model	NOUN
ddj-47	2	19	for	for	ADP
ddj-47	2	20	protein	protein	NOUN
ddj-47	2	21	folding	folding	NOUN
ddj-47	2	22	and	and	CCONJ
ddj-47	2	23	biocatalysis	biocatalysis	NOUN
ddj-47	2	24	matti	matti	PROPN
ddj-47	2	25	pitkänen	pitkänen	PROPN
ddj-47	2	26	1	1	NUM
ddj-47	2	27	abstract	abstract	NOUN
ddj-47	2	28	the	the	DET
ddj-47	2	29	model	model	NOUN
ddj-47	2	30	for	for	ADP
ddj-47	2	31	the	the	DET
ddj-47	2	32	evolution	evolution	NOUN
ddj-47	2	33	of	of	ADP
ddj-47	2	34	genetic	genetic	ADJ
ddj-47	2	35	code	code	NOUN
ddj-47	2	36	leads	lead	VERB
ddj-47	2	37	to	to	ADP
ddj-47	2	38	the	the	DET
ddj-47	2	39	idea	idea	NOUN
ddj-47	2	40	that	that	SCONJ
ddj-47	2	41	the	the	DET
ddj-47	2	42	folding	folding	NOUN
ddj-47	2	43	of	of	ADP
ddj-47	2	44	proteins	protein	NOUN
ddj-47	2	45	obeys	obey	VERB
ddj-47	2	46	a	a	DET
ddj-47	2	47	folding	fold	VERB
ddj-47	2	48	code	code	NOUN
ddj-47	2	49	inherited	inherit	VERB
ddj-47	2	50	from	from	ADP
ddj-47	2	51	the	the	DET
ddj-47	2	52	genetic	genetic	ADJ
ddj-47	2	53	code	code	NOUN
ddj-47	2	54	.	.	PUNCT
ddj-47	3	1	the	the	DET
ddj-47	3	2	flux	flux	NOUN
ddj-47	3	3	connections	connection	NOUN
ddj-47	3	4	between	between	ADP
ddj-47	3	5	molecules	molecule	NOUN
ddj-47	3	6	containing	contain	VERB
ddj-47	3	7	dark	dark	ADJ
ddj-47	3	8	matter	matter	NOUN
ddj-47	3	9	in	in	ADP
ddj-47	3	10	macroscopic	macroscopic	ADJ
ddj-47	3	11	quantum	quantum	NOUN
ddj-47	3	12	phase	phase	NOUN
ddj-47	3	13	and	and	CCONJ
ddj-47	3	14	characterized	characterize	VERB
ddj-47	3	15	by	by	ADP
ddj-47	3	16	two	two	NUM
ddj-47	3	17	integers	integer	NOUN
ddj-47	3	18	are	be	AUX
ddj-47	3	19	the	the	DET
ddj-47	3	20	basic	basic	ADJ
ddj-47	3	21	new	new	ADJ
ddj-47	3	22	physics	physics	NOUN
ddj-47	3	23	element	element	NOUN
ddj-47	3	24	of	of	ADP
ddj-47	3	25	the	the	DET
ddj-47	3	26	model	model	NOUN
ddj-47	3	27	.	.	PUNCT
ddj-47	4	1	after	after	SCONJ
ddj-47	4	2	some	some	DET
ddj-47	4	3	trials	trial	NOUN
ddj-47	4	4	one	one	PRON
ddj-47	4	5	ends	end	VERB
ddj-47	4	6	up	up	ADP
ddj-47	4	7	with	with	ADP
ddj-47	4	8	a	a	DET
ddj-47	4	9	general	general	ADJ
ddj-47	4	10	conceptualization	conceptualization	NOUN
ddj-47	4	11	of	of	ADP
ddj-47	4	12	the	the	DET
ddj-47	4	13	situation	situation	NOUN
ddj-47	4	14	with	with	ADP
ddj-47	4	15	the	the	DET
ddj-47	4	16	identification	identification	NOUN
ddj-47	4	17	o	o	PROPN
ddj-47	4	18	magnetic	magnetic	PROPN
ddj-47	4	19	flux	flux	PROPN
ddj-47	4	20	tubes	tube	NOUN
ddj-47	4	21	as	as	ADP
ddj-47	4	22	correlates	correlate	NOUN
ddj-47	4	23	of	of	ADP
ddj-47	4	24	attention	attention	NOUN
ddj-47	4	25	at	at	ADP
ddj-47	4	26	molecular	molecular	ADJ
ddj-47	4	27	level	level	NOUN
ddj-47	4	28	so	so	SCONJ
ddj-47	4	29	that	that	SCONJ
ddj-47	4	30	a	a	DET
ddj-47	4	31	direct	direct	ADJ
ddj-47	4	32	connection	connection	NOUN
ddj-47	4	33	with	with	ADP
ddj-47	4	34	tgd	tgd	PROPN
ddj-47	4	35	inspired	inspire	VERB
ddj-47	4	36	theory	theory	NOUN
ddj-47	4	37	of	of	ADP
ddj-47	4	38	consciousness	consciousness	NOUN
ddj-47	4	39	emerges	emerge	VERB
ddj-47	4	40	at	at	ADP
ddj-47	4	41	quantitative	quantitative	ADJ
ddj-47	4	42	level	level	NOUN
ddj-47	4	43	.	.	PUNCT
ddj-47	5	1	this	this	PRON
ddj-47	5	2	allows	allow	VERB
ddj-47	5	3	a	a	DET
ddj-47	5	4	far	far	ADV
ddj-47	5	5	reaching	reach	VERB
ddj-47	5	6	generalization	generalization	NOUN
ddj-47	5	7	of	of	ADP
ddj-47	5	8	the	the	DET
ddj-47	5	9	dna	dna	PROPN
ddj-47	5	10	as	as	ADP
ddj-47	5	11	topological	topological	ADJ
ddj-47	5	12	quantum	quantum	ADJ
ddj-47	5	13	computer	computer	NOUN
ddj-47	5	14	paradigm	paradigm	NOUN
ddj-47	5	15	and	and	CCONJ
ddj-47	5	16	makes	make	VERB
ddj-47	5	17	it	it	PRON
ddj-47	5	18	much	much	ADV
ddj-47	5	19	more	more	ADV
ddj-47	5	20	detailed	detailed	ADJ
ddj-47	5	21	.	.	PUNCT
ddj-47	6	1	by	by	ADP
ddj-47	6	2	their	their	PRON
ddj-47	6	3	asymmetric	asymmetric	ADJ
ddj-47	6	4	character	character	NOUN
ddj-47	6	5	hydrogen	hydrogen	NOUN
ddj-47	6	6	bonds	bond	NOUN
ddj-47	6	7	are	be	AUX
ddj-47	6	8	excellent	excellent	ADJ
ddj-47	6	9	candidates	candidate	NOUN
ddj-47	6	10	for	for	ADP
ddj-47	6	11	contracted	contract	VERB
ddj-47	6	12	magnetic	magnetic	ADJ
ddj-47	6	13	flux	flux	NOUN
ddj-47	6	14	tubes	tube	NOUN
ddj-47	6	15	serving	serve	VERB
ddj-47	6	16	as	as	ADP
ddj-47	6	17	correlates	correlate	NOUN
ddj-47	6	18	of	of	ADP
ddj-47	6	19	attention	attention	NOUN
ddj-47	6	20	at	at	ADP
ddj-47	6	21	molecular	molecular	ADJ
ddj-47	6	22	level	level	NOUN
ddj-47	6	23	.	.	PUNCT
ddj-47	7	1	one	one	PRON
ddj-47	7	2	can	can	AUX
ddj-47	7	3	consider	consider	VERB
ddj-47	7	4	two	two	NUM
ddj-47	7	5	models	model	NOUN
ddj-47	7	6	.	.	PUNCT
ddj-47	8	1	for	for	ADP
ddj-47	8	2	the	the	DET
ddj-47	8	3	first	first	ADJ
ddj-47	8	4	model	model	NOUN
ddj-47	8	5	the	the	DET
ddj-47	8	6	flux	flux	NOUN
ddj-47	8	7	tubes	tube	NOUN
ddj-47	8	8	between	between	ADP
ddj-47	8	9	amino	amino	NOUN
ddj-47	8	10	-	-	PUNCT
ddj-47	8	11	acids	acid	NOUN
ddj-47	8	12	are	be	AUX
ddj-47	8	13	assumed	assume	VERB
ddj-47	8	14	to	to	PART
ddj-47	8	15	determine	determine	VERB
ddj-47	8	16	the	the	DET
ddj-47	8	17	protein	protein	NOUN
ddj-47	8	18	folding	folding	NOUN
ddj-47	8	19	.	.	PUNCT
ddj-47	9	1	1	1	X
ddj-47	9	2	.	.	X
ddj-47	9	3	the	the	DET
ddj-47	9	4	constant	constant	ADJ
ddj-47	9	5	part	part	NOUN
ddj-47	9	6	of	of	ADP
ddj-47	9	7	free	free	ADJ
ddj-47	9	8	amino	amino	NOUN
ddj-47	9	9	-	-	PUNCT
ddj-47	9	10	acid	acid	NOUN
ddj-47	9	11	containing	contain	VERB
ddj-47	9	12	o	o	NOUN
ddj-47	9	13	−	−	PROPN
ddj-47	9	14	h	h	NOUN
ddj-47	9	15	,	,	PUNCT
ddj-47	9	16	o	o	PROPN
ddj-47	9	17	=	=	X
ddj-47	9	18	,	,	PUNCT
ddj-47	9	19	and	and	CCONJ
ddj-47	9	20	nh2	nh2	PROPN
ddj-47	9	21	would	would	AUX
ddj-47	9	22	correspond	correspond	VERB
ddj-47	9	23	to	to	ADP
ddj-47	9	24	the	the	DET
ddj-47	9	25	codon	codon	PROPN
ddj-47	9	26	xyz	xyz	NOUN
ddj-47	9	27	in	in	ADP
ddj-47	9	28	the	the	DET
ddj-47	9	29	sense	sense	NOUN
ddj-47	9	30	that	that	SCONJ
ddj-47	9	31	the	the	DET
ddj-47	9	32	flux	flux	NOUN
ddj-47	9	33	tubes	tube	NOUN
ddj-47	9	34	would	would	AUX
ddj-47	9	35	carry	carry	VERB
ddj-47	9	36	the	the	DET
ddj-47	9	37	”	"	PUNCT
ddj-47	9	38	color	color	NOUN
ddj-47	9	39	”	"	PUNCT
ddj-47	9	40	representing	represent	VERB
ddj-47	9	41	the	the	DET
ddj-47	9	42	four	four	NUM
ddj-47	9	43	nucleotides	nucleotide	NOUN
ddj-47	9	44	in	in	ADP
ddj-47	9	45	terms	term	NOUN
ddj-47	9	46	of	of	ADP
ddj-47	9	47	quark	quark	ADJ
ddj-47	9	48	pairs	pair	NOUN
ddj-47	9	49	.	.	PUNCT
ddj-47	10	1	color	color	NOUN
ddj-47	10	2	inheritance	inheritance	NOUN
ddj-47	10	3	by	by	ADP
ddj-47	10	4	flux	flux	NOUN
ddj-47	10	5	tube	tube	NOUN
ddj-47	10	6	reconnection	reconnection	NOUN
ddj-47	10	7	makes	make	VERB
ddj-47	10	8	this	this	PRON
ddj-47	10	9	possible	possible	ADJ
ddj-47	10	10	.	.	PUNCT
ddj-47	11	1	for	for	ADP
ddj-47	11	2	the	the	DET
ddj-47	11	3	amino	amino	NOUN
ddj-47	11	4	-	-	PUNCT
ddj-47	11	5	adics	adics	NOUN
ddj-47	11	6	inside	inside	ADP
ddj-47	11	7	protein	protein	NOUN
ddj-47	11	8	o	o	PROPN
ddj-47	11	9	=	=	PUNCT
ddj-47	11	10	and	and	CCONJ
ddj-47	11	11	n	n	PRON
ddj-47	11	12	−	−	PROPN
ddj-47	11	13	h	h	NOUN
ddj-47	11	14	would	would	AUX
ddj-47	11	15	correspond	correspond	VERB
ddj-47	11	16	to	to	ADP
ddj-47	11	17	y	y	PROPN
ddj-47	11	18	z.	z.	PROPN
ddj-47	11	19	also	also	ADV
ddj-47	11	20	flux	flux	VERB
ddj-47	11	21	tubes	tube	NOUN
ddj-47	11	22	connecting	connect	VERB
ddj-47	11	23	the	the	DET
ddj-47	11	24	acceptor	acceptor	NOUN
ddj-47	11	25	atoms	atom	NOUN
ddj-47	11	26	of	of	ADP
ddj-47	11	27	hydrogen	hydrogen	NOUN
ddj-47	11	28	bonds	bond	NOUN
ddj-47	11	29	are	be	AUX
ddj-47	11	30	required	require	VERB
ddj-47	11	31	by	by	ADP
ddj-47	11	32	the	the	DET
ddj-47	11	33	model	model	NOUN
ddj-47	11	34	of	of	ADP
ddj-47	11	35	dna	dna	PROPN
ddj-47	11	36	as	as	ADP
ddj-47	11	37	topological	topological	ADJ
ddj-47	11	38	quantum	quantum	ADJ
ddj-47	11	39	computer	computer	NOUN
ddj-47	11	40	.	.	PUNCT
ddj-47	12	1	the	the	DET
ddj-47	12	2	long	long	ADJ
ddj-47	12	3	flux	flux	NOUN
ddj-47	12	4	tubes	tube	NOUN
ddj-47	12	5	between	between	ADP
ddj-47	12	6	o	o	NOUN
ddj-47	12	7	=	=	NOUN
ddj-47	12	8	atoms	atom	NOUN
ddj-47	12	9	and	and	CCONJ
ddj-47	12	10	their	their	PRON
ddj-47	12	11	length	length	NOUN
ddj-47	12	12	reduction	reduction	NOUN
ddj-47	12	13	in	in	ADP
ddj-47	12	14	a	a	DET
ddj-47	12	15	phase	phase	NOUN
ddj-47	12	16	transition	transition	NOUN
ddj-47	12	17	reducing	reduce	VERB
ddj-47	12	18	planck	planck	NOUN
ddj-47	12	19	constant	constant	ADJ
ddj-47	12	20	could	could	AUX
ddj-47	12	21	be	be	AUX
ddj-47	12	22	essential	essential	ADJ
ddj-47	12	23	in	in	ADP
ddj-47	12	24	protein	protein	NOUN
ddj-47	12	25	-	-	PUNCT
ddj-47	12	26	ligand	ligand	NOUN
ddj-47	12	27	interaction	interaction	NOUN
ddj-47	12	28	.	.	PUNCT
ddj-47	13	1	2	2	X
ddj-47	13	2	.	.	X
ddj-47	13	3	the	the	DET
ddj-47	13	4	model	model	NOUN
ddj-47	13	5	predicts	predict	VERB
ddj-47	13	6	a	a	DET
ddj-47	13	7	code	code	NOUN
ddj-47	13	8	for	for	ADP
ddj-47	13	9	protein	protein	NOUN
ddj-47	13	10	folding	folding	NOUN
ddj-47	13	11	:	:	PUNCT
ddj-47	13	12	depending	depend	VERB
ddj-47	13	13	on	on	ADP
ddj-47	13	14	whether	whether	SCONJ
ddj-47	13	15	also	also	ADV
ddj-47	13	16	=	=	SYM
ddj-47	14	1	o	o	NOUN
ddj-47	14	2	−	−	NOUN
ddj-47	15	1	o	o	NOUN
ddj-47	15	2	=	=	SYM
ddj-47	15	3	flux	flux	NOUN
ddj-47	15	4	tubes	tube	NOUN
ddj-47	15	5	are	be	AUX
ddj-47	15	6	allowed	allow	VERB
ddj-47	15	7	or	or	CCONJ
ddj-47	15	8	not	not	PART
ddj-47	15	9	,	,	PUNCT
ddj-47	15	10	y	y	PROPN
ddj-47	15	11	=	=	PUNCT
ddj-47	15	12	z	z	PROPN
ddj-47	15	13	or	or	CCONJ
ddj-47	15	14	y	y	PROPN
ddj-47	15	15	=	=	PUNCT
ddj-47	15	16	zc	zc	NOUN
ddj-47	15	17	condition	condition	NOUN
ddj-47	15	18	is	be	AUX
ddj-47	15	19	satisfied	satisfied	ADJ
ddj-47	15	20	by	by	ADP
ddj-47	15	21	the	the	DET
ddj-47	15	22	amino	amino	NOUN
ddj-47	15	23	-	-	PUNCT
ddj-47	15	24	acids	acid	NOUN
ddj-47	15	25	having	have	VERB
ddj-47	15	26	n−h−−o	n−h−−o	PROPN
ddj-47	15	27	=	=	PUNCT
ddj-47	15	28	hydrogen	hydrogen	NOUN
ddj-47	15	29	bond	bond	NOUN
ddj-47	15	30	.	.	PUNCT
ddj-47	16	1	for	for	ADP
ddj-47	16	2	=	=	SYM
ddj-47	16	3	o−o	o−o	NOUN
ddj-47	16	4	=	=	NOUN
ddj-47	16	5	bonds	bond	NOUN
ddj-47	16	6	y	y	PROPN
ddj-47	16	7	−yc	−yc	NOUN
ddj-47	16	8	pairing	pairing	NOUN
ddj-47	16	9	holds	hold	VERB
ddj-47	16	10	true	true	ADJ
ddj-47	16	11	.	.	PUNCT
ddj-47	17	1	if	if	SCONJ
ddj-47	17	2	one	one	PRON
ddj-47	17	3	identifies	identify	VERB
ddj-47	17	4	hydrogen	hydrogen	NOUN
ddj-47	17	5	bond	bond	NOUN
ddj-47	17	6	with	with	ADP
ddj-47	17	7	flux	flux	NOUN
ddj-47	17	8	tube	tube	NOUN
ddj-47	17	9	(	(	PUNCT
ddj-47	17	10	y	y	PROPN
ddj-47	17	11	(	(	PUNCT
ddj-47	17	12	n	n	CCONJ
ddj-47	17	13	)	)	PUNCT
ddj-47	17	14	=	=	NOUN
ddj-47	17	15	z(n	z(n	PROPN
ddj-47	17	16	+	+	CCONJ
ddj-47	17	17	k	k	NOUN
ddj-47	17	18	)	)	PUNCT
ddj-47	17	19	)	)	PUNCT
ddj-47	17	20	the	the	DET
ddj-47	17	21	model	model	NOUN
ddj-47	17	22	works	work	VERB
ddj-47	17	23	badly	badly	ADV
ddj-47	17	24	for	for	ADP
ddj-47	17	25	both	both	DET
ddj-47	17	26	options	option	NOUN
ddj-47	17	27	.	.	PUNCT
ddj-47	18	1	if	if	SCONJ
ddj-47	18	2	one	one	PRON
ddj-47	18	3	assumes	assume	VERB
ddj-47	18	4	only	only	ADV
ddj-47	18	5	that	that	SCONJ
ddj-47	18	6	the	the	DET
ddj-47	18	7	presence	presence	NOUN
ddj-47	18	8	of	of	ADP
ddj-47	18	9	a	a	DET
ddj-47	18	10	flux	flux	NOUN
ddj-47	18	11	tube	tube	NOUN
ddj-47	18	12	connecting	connect	VERB
ddj-47	18	13	amino	amino	NOUN
ddj-47	18	14	-	-	PUNCT
ddj-47	18	15	acids	acid	NOUN
ddj-47	18	16	in	in	ADP
ddj-47	18	17	either	either	DET
ddj-47	18	18	direction	direction	NOUN
ddj-47	18	19	(	(	PUNCT
ddj-47	18	20	y	y	PROPN
ddj-47	18	21	(	(	PUNCT
ddj-47	18	22	n	n	CCONJ
ddj-47	18	23	)	)	PUNCT
ddj-47	18	24	=	=	NOUN
ddj-47	18	25	z(n	z(n	PROPN
ddj-47	18	26	+	+	CCONJ
ddj-47	18	27	k	k	NOUN
ddj-47	18	28	)	)	PUNCT
ddj-47	18	29	or	or	CCONJ
ddj-47	18	30	z(n	z(n	NOUN
ddj-47	18	31	)	)	PUNCT
ddj-47	18	32	=	=	SYM
ddj-47	18	33	y	y	PROPN
ddj-47	18	34	(	(	PUNCT
ddj-47	18	35	n	n	PROPN
ddj-47	18	36	+	+	CCONJ
ddj-47	18	37	k	k	NOUN
ddj-47	18	38	)	)	PUNCT
ddj-47	18	39	)	)	PUNCT
ddj-47	18	40	is	be	AUX
ddj-47	18	41	a	a	DET
ddj-47	18	42	prerequisite	prerequisite	NOUN
ddj-47	18	43	for	for	ADP
ddj-47	18	44	the	the	DET
ddj-47	18	45	formation	formation	NOUN
ddj-47	18	46	of	of	ADP
ddj-47	18	47	hydrogen	hydrogen	NOUN
ddj-47	18	48	bond	bond	NOUN
ddj-47	18	49	,	,	PUNCT
ddj-47	18	50	the	the	DET
ddj-47	18	51	model	model	NOUN
ddj-47	18	52	works	work	VERB
ddj-47	18	53	.	.	PUNCT
ddj-47	19	1	y	y	NOUN
ddj-47	19	2	=	=	NOUN
ddj-47	19	3	zc	zc	NOUN
ddj-47	19	4	option	option	NOUN
ddj-47	19	5	predicts	predict	VERB
ddj-47	19	6	the	the	DET
ddj-47	19	7	average	average	ADJ
ddj-47	19	8	length	length	NOUN
ddj-47	19	9	of	of	ADP
ddj-47	19	10	alpha	alpha	NOUN
ddj-47	19	11	bonds	bond	NOUN
ddj-47	19	12	correctly	correctly	ADV
ddj-47	19	13	.	.	PUNCT
ddj-47	20	1	y	y	NOUN
ddj-47	20	2	=	=	PUNCT
ddj-47	20	3	z	z	NOUN
ddj-47	20	4	rule	rule	NOUN
ddj-47	20	5	is	be	AUX
ddj-47	20	6	however	however	ADV
ddj-47	20	7	favored	favor	VERB
ddj-47	20	8	by	by	ADP
ddj-47	20	9	the	the	DET
ddj-47	20	10	study	study	NOUN
ddj-47	20	11	of	of	ADP
ddj-47	20	12	alpha	alpha	NOUN
ddj-47	20	13	helices	helix	NOUN
ddj-47	20	14	for	for	ADP
ddj-47	20	15	four	four	NUM
ddj-47	20	16	enzymes	enzyme	NOUN
ddj-47	20	17	:	:	PUNCT
ddj-47	20	18	the	the	DET
ddj-47	20	19	possible	possible	ADJ
ddj-47	20	20	average	average	ADJ
ddj-47	20	21	length	length	NOUN
ddj-47	20	22	of	of	ADP
ddj-47	20	23	alpha	alpha	ADJ
ddj-47	20	24	helix	helix	NOUN
ddj-47	20	25	is	be	AUX
ddj-47	20	26	considerably	considerably	ADV
ddj-47	20	27	longer	long	ADJ
ddj-47	20	28	than	than	ADP
ddj-47	20	29	the	the	DET
ddj-47	20	30	average	average	ADJ
ddj-47	20	31	length	length	NOUN
ddj-47	20	32	of	of	ADP
ddj-47	20	33	alpha	alpha	ADJ
ddj-47	20	34	helix	helix	NOUN
ddj-47	20	35	if	if	SCONJ
ddj-47	20	36	gene	gene	NOUN
ddj-47	20	37	is	be	AUX
ddj-47	20	38	the	the	DET
ddj-47	20	39	unique	unique	ADJ
ddj-47	20	40	gene	gene	NOUN
ddj-47	20	41	allowing	allow	VERB
ddj-47	20	42	to	to	PART
ddj-47	20	43	satisfy	satisfy	VERB
ddj-47	20	44	y	y	NOUN
ddj-47	20	45	=	=	PUNCT
ddj-47	20	46	z	z	NOUN
ddj-47	20	47	rule	rule	NOUN
ddj-47	20	48	.	.	PUNCT
ddj-47	21	1	the	the	DET
ddj-47	21	2	explicit	explicit	ADJ
ddj-47	21	3	study	study	NOUN
ddj-47	21	4	of	of	ADP
ddj-47	21	5	alpha	alpha	NOUN
ddj-47	21	6	helices	helix	NOUN
ddj-47	21	7	for	for	ADP
ddj-47	21	8	four	four	NUM
ddj-47	21	9	enzymes	enzyme	NOUN
ddj-47	21	10	demonstrates	demonstrate	VERB
ddj-47	21	11	that	that	SCONJ
ddj-47	21	12	the	the	DET
ddj-47	21	13	failure	failure	NOUN
ddj-47	21	14	to	to	PART
ddj-47	21	15	satisfy	satisfy	VERB
ddj-47	21	16	the	the	DET
ddj-47	21	17	condition	condition	NOUN
ddj-47	21	18	for	for	ADP
ddj-47	21	19	the	the	DET
ddj-47	21	20	existence	existence	NOUN
ddj-47	21	21	of	of	ADP
ddj-47	21	22	hydrogen	hydrogen	NOUN
ddj-47	21	23	bond	bond	NOUN
ddj-47	21	24	fails	fail	VERB
ddj-47	21	25	rarely	rarely	ADV
ddj-47	21	26	and	and	CCONJ
ddj-47	21	27	at	at	ADP
ddj-47	21	28	most	most	ADJ
ddj-47	21	29	for	for	ADP
ddj-47	21	30	two	two	NUM
ddj-47	21	31	amino	amino	NOUN
ddj-47	21	32	-	-	PUNCT
ddj-47	21	33	acids	acid	NOUN
ddj-47	21	34	(	(	PUNCT
ddj-47	21	35	for	for	ADP
ddj-47	21	36	2	2	NUM
ddj-47	21	37	amino	amino	NOUN
ddj-47	21	38	-	-	PUNCT
ddj-47	21	39	acids	acid	NOUN
ddj-47	21	40	in	in	ADP
ddj-47	21	41	single	single	ADJ
ddj-47	21	42	case	case	NOUN
ddj-47	21	43	only	only	ADV
ddj-47	21	44	)	)	PUNCT
ddj-47	21	45	.	.	PUNCT
ddj-47	22	1	for	for	ADP
ddj-47	22	2	beta	beta	ADJ
ddj-47	22	3	sheets	sheet	NOUN
ddj-47	22	4	there	there	ADV
ddj-47	22	5	ar	ar	VERB
ddj-47	22	6	no	no	DET
ddj-47	22	7	failures	failure	NOUN
ddj-47	22	8	for	for	ADP
ddj-47	22	9	y	y	NOUN
ddj-47	22	10	=	=	SYM
ddj-47	22	11	z	z	NOUN
ddj-47	22	12	option	option	NOUN
ddj-47	22	13	.	.	PUNCT
ddj-47	23	1	3	3	X
ddj-47	23	2	.	.	X
ddj-47	23	3	the	the	DET
ddj-47	23	4	information	information	NOUN
ddj-47	23	5	apparently	apparently	ADV
ddj-47	23	6	lost	lose	VERB
ddj-47	23	7	in	in	ADP
ddj-47	23	8	the	the	DET
ddj-47	23	9	many	many	ADJ
ddj-47	23	10	-	-	PUNCT
ddj-47	23	11	to	to	ADP
ddj-47	23	12	-	-	PUNCT
ddj-47	23	13	one	one	NUM
ddj-47	23	14	character	character	NOUN
ddj-47	23	15	of	of	ADP
ddj-47	23	16	the	the	DET
ddj-47	23	17	codon	codon	NOUN
ddj-47	23	18	-	-	PUNCT
ddj-47	23	19	amino	amino	NOUN
ddj-47	23	20	-	-	PUNCT
ddj-47	23	21	acid	acid	NOUN
ddj-47	23	22	correspondence	correspondence	NOUN
ddj-47	23	23	would	would	AUX
ddj-47	23	24	code	code	VERB
ddj-47	23	25	for	for	ADP
ddj-47	23	26	the	the	DET
ddj-47	23	27	folding	folding	NOUN
ddj-47	23	28	of	of	ADP
ddj-47	23	29	the	the	DET
ddj-47	23	30	protein	protein	NOUN
ddj-47	23	31	and	and	CCONJ
ddj-47	23	32	similar	similar	ADJ
ddj-47	23	33	amino	amino	NOUN
ddj-47	23	34	-	-	PUNCT
ddj-47	23	35	acid	acid	NOUN
ddj-47	23	36	sequences	sequence	NOUN
ddj-47	23	37	could	could	AUX
ddj-47	23	38	give	give	VERB
ddj-47	23	39	rise	rise	NOUN
ddj-47	23	40	to	to	ADP
ddj-47	23	41	different	different	ADJ
ddj-47	23	42	foldings	folding	NOUN
ddj-47	23	43	.	.	PUNCT
ddj-47	24	1	also	also	ADV
ddj-47	24	2	catalyst	catalyst	NOUN
ddj-47	24	3	action	action	NOUN
ddj-47	24	4	would	would	AUX
ddj-47	24	5	reduce	reduce	VERB
ddj-47	24	6	to	to	ADP
ddj-47	24	7	effective	effective	ADJ
ddj-47	24	8	base	base	NOUN
ddj-47	24	9	pairing	pairing	NOUN
ddj-47	24	10	and	and	CCONJ
ddj-47	24	11	one	one	PRON
ddj-47	24	12	can	can	AUX
ddj-47	24	13	speak	speak	VERB
ddj-47	24	14	about	about	ADP
ddj-47	24	15	catalyst	catalyst	NOUN
ddj-47	24	16	code	code	NOUN
ddj-47	24	17	.	.	PUNCT
ddj-47	25	1	the	the	DET
ddj-47	25	2	dna	dna	PROPN
ddj-47	25	3	sequences	sequence	NOUN
ddj-47	25	4	associated	associate	VERB
ddj-47	25	5	with	with	ADP
ddj-47	25	6	alpha	alpha	NOUN
ddj-47	25	7	helices	helix	NOUN
ddj-47	25	8	and	and	CCONJ
ddj-47	25	9	beta	beta	NOUN
ddj-47	25	10	sheets	sheet	NOUN
ddj-47	25	11	are	be	AUX
ddj-47	25	12	completely	completely	ADV
ddj-47	25	13	predictable	predictable	ADJ
ddj-47	25	14	unless	unless	SCONJ
ddj-47	25	15	one	one	NUM
ddj-47	25	16	assumes	assume	VERB
ddj-47	25	17	a	a	DET
ddj-47	25	18	quantum	quantum	ADJ
ddj-47	25	19	counterpart	counterpart	NOUN
ddj-47	25	20	of	of	ADP
ddj-47	25	21	wobble	wobble	ADJ
ddj-47	25	22	base	base	NOUN
ddj-47	25	23	pairing	pairing	NOUN
ddj-47	25	24	meaning	mean	VERB
ddj-47	25	25	that	that	SCONJ
ddj-47	25	26	n−h	n−h	PROPN
ddj-47	25	27	flux	flux	NOUN
ddj-47	25	28	tubes	tube	NOUN
ddj-47	25	29	are	be	AUX
ddj-47	25	30	before	before	ADP
ddj-47	25	31	hydrogen	hydrogen	NOUN
ddj-47	25	32	bonding	bonding	NOUN
ddj-47	25	33	in	in	ADP
ddj-47	25	34	quantum	quantum	ADJ
ddj-47	25	35	superpositions	superposition	NOUN
ddj-47	25	36	of	of	ADP
ddj-47	25	37	braid	braid	NOUN
ddj-47	25	38	colors	color	NOUN
ddj-47	25	39	associated	associate	VERB
ddj-47	25	40	with	with	ADP
ddj-47	25	41	the	the	DET
ddj-47	25	42	third	third	ADJ
ddj-47	25	43	nucleotides	nucleotide	NOUN
ddj-47	25	44	z	z	NOUN
ddj-47	25	45	of	of	ADP
ddj-47	25	46	codons	codon	NOUN
ddj-47	25	47	xy	xy	PUNCT
ddj-47	25	48	z	z	NOUN
ddj-47	25	49	coding	code	VERB
ddj-47	25	50	for	for	ADP
ddj-47	25	51	amino	amino	NOUN
ddj-47	25	52	-	-	PUNCT
ddj-47	25	53	acid	acid	NOUN
ddj-47	25	54	.	.	PUNCT
ddj-47	26	1	only	only	ADV
ddj-47	26	2	the	the	DET
ddj-47	26	3	latter	latter	ADJ
ddj-47	26	4	option	option	NOUN
ddj-47	26	5	works	work	VERB
ddj-47	26	6	.	.	PUNCT
ddj-47	27	1	the	the	DET
ddj-47	27	2	outcome	outcome	NOUN
ddj-47	27	3	is	be	AUX
ddj-47	27	4	very	very	ADV
ddj-47	27	5	simple	simple	ADJ
ddj-47	27	6	quantitative	quantitative	ADJ
ddj-47	27	7	model	model	NOUN
ddj-47	27	8	for	for	ADP
ddj-47	27	9	folding	folding	NOUN
ddj-47	27	10	and	and	CCONJ
ddj-47	27	11	catalyst	catalyst	NOUN
ddj-47	27	12	action	action	NOUN
ddj-47	27	13	based	base	VERB
ddj-47	27	14	on	on	ADP
ddj-47	27	15	minimization	minimization	NOUN
ddj-47	27	16	of	of	ADP
ddj-47	27	17	energy	energy	NOUN
ddj-47	27	18	and	and	CCONJ
ddj-47	27	19	predicting	predicting	NOUN
ddj-47	27	20	as	as	ADP
ddj-47	27	21	its	its	PRON
ddj-47	27	22	solutions	solution	NOUN
ddj-47	27	23	alpha	alpha	NOUN
ddj-47	27	24	helices	helix	NOUN
ddj-47	27	25	and	and	CCONJ
ddj-47	27	26	beta	beta	ADJ
ddj-47	27	27	strands	strand	NOUN
ddj-47	27	28	.	.	PUNCT
ddj-47	28	1	1correspondence	1correspondence	NUM
ddj-47	28	2	:	:	PUNCT
ddj-47	28	3	matti	matti	PROPN
ddj-47	28	4	pitkänen	pitkänen	PROPN
ddj-47	28	5	http://tgdtheory.com/.	http://tgdtheory.com/.	PROPN
ddj-47	28	6	address	address	NOUN
ddj-47	28	7	:	:	PUNCT
ddj-47	28	8	köydenpunojankatu	köydenpunojankatu	NOUN
ddj-47	28	9	2	2	NUM
ddj-47	28	10	d	d	PROPN
ddj-47	28	11	11	11	NUM
ddj-47	28	12	10940	10940	NUM
ddj-47	28	13	,	,	PUNCT
ddj-47	28	14	hanko	hanko	PROPN
ddj-47	28	15	,	,	PUNCT
ddj-47	28	16	finland	finland	PROPN
ddj-47	28	17	.	.	PUNCT
ddj-47	29	1	email	email	NOUN
ddj-47	29	2	:	:	PUNCT
ddj-47	30	1	matpitka@luukku.com	matpitka@luukku.com	X
ddj-47	30	2	.	.	PUNCT
ddj-47	31	1	issn	issn	PROPN
ddj-47	31	2	:	:	PUNCT
ddj-47	31	3	2159	2159	NUM
ddj-47	31	4	-	-	SYM
ddj-47	31	5	0465	0465	NUM
ddj-47	31	6	dna	dna	PROPN
ddj-47	31	7	decipher	decipher	PROPN
ddj-47	31	8	journal	journal	PROPN
ddj-47	31	9	june	june	PROPN
ddj-47	31	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	31	11	published	publish	VERB
ddj-47	31	12	by	by	ADP
ddj-47	31	13	quantumdream	quantumdream	PROPN
ddj-47	31	14	,	,	PUNCT
ddj-47	31	15	inc	inc	PROPN
ddj-47	31	16	.	.	PUNCT
ddj-47	32	1	http://tgdtheory.com/	http://tgdtheory.com/	PROPN
ddj-47	32	2	mailto:matpitka@luukku.com	mailto:matpitka@luukku.com	X
ddj-47	32	3	dna	dna	PROPN
ddj-47	32	4	decipher	decipher	PROPN
ddj-47	32	5	journal	journal	NOUN
ddj-47	33	1	|	|	ADV
ddj-47	33	2	may	may	AUX
ddj-47	33	3	2013	2013	NUM
ddj-47	33	4	|	|	ADV
ddj-47	33	5	volume	volume	NOUN
ddj-47	33	6	3	3	NUM
ddj-47	33	7	|	|	NOUN
ddj-47	33	8	issue	issue	VERB
ddj-47	33	9	1	1	NUM
ddj-47	33	10	|	|	ADV
ddj-47	33	11	pp	pp	ADJ
ddj-47	33	12	.	.	PUNCT
ddj-47	34	1	58	58	NUM
ddj-47	34	2	-	-	SYM
ddj-47	34	3	88	88	NUM
ddj-47	34	4	59	59	NUM
ddj-47	34	5	pitkänen	pitkänen	NOUN
ddj-47	34	6	,	,	PUNCT
ddj-47	34	7	m.	m.	NOUN
ddj-47	34	8	,	,	PUNCT
ddj-47	34	9	a	a	DET
ddj-47	34	10	model	model	NOUN
ddj-47	34	11	for	for	ADP
ddj-47	34	12	protein	protein	NOUN
ddj-47	34	13	folding	folding	NOUN
ddj-47	34	14	and	and	CCONJ
ddj-47	34	15	biocatalysis	biocatalysis	NOUN
ddj-47	34	16	second	second	ADJ
ddj-47	34	17	model	model	NOUN
ddj-47	34	18	represents	represent	VERB
ddj-47	34	19	a	a	DET
ddj-47	34	20	diametrical	diametrical	ADJ
ddj-47	34	21	opposite	opposite	NOUN
ddj-47	34	22	of	of	ADP
ddj-47	34	23	the	the	DET
ddj-47	34	24	first	first	ADJ
ddj-47	34	25	model	model	NOUN
ddj-47	34	26	in	in	ADP
ddj-47	34	27	the	the	DET
ddj-47	34	28	sense	sense	NOUN
ddj-47	34	29	in	in	ADP
ddj-47	34	30	that	that	SCONJ
ddj-47	34	31	it	it	PRON
ddj-47	34	32	assumes	assume	VERB
ddj-47	34	33	flux	flux	NOUN
ddj-47	34	34	tube	tube	NOUN
ddj-47	34	35	connections	connection	NOUN
ddj-47	34	36	only	only	ADV
ddj-47	34	37	between	between	ADP
ddj-47	34	38	amino	amino	NOUN
ddj-47	34	39	-	-	PUNCT
ddj-47	34	40	acids	acid	NOUN
ddj-47	34	41	and	and	CCONJ
ddj-47	34	42	water	water	NOUN
ddj-47	34	43	molecules	molecule	NOUN
ddj-47	34	44	.	.	PUNCT
ddj-47	35	1	these	these	DET
ddj-47	35	2	flux	flux	PROPN
ddj-47	35	3	tubes	tube	NOUN
ddj-47	35	4	mediate	mediate	VERB
ddj-47	35	5	an	an	DET
ddj-47	35	6	attractive	attractive	ADJ
ddj-47	35	7	(	(	PUNCT
ddj-47	35	8	repulsive	repulsive	ADJ
ddj-47	35	9	)	)	PUNCT
ddj-47	35	10	interaction	interaction	NOUN
ddj-47	35	11	in	in	ADP
ddj-47	35	12	the	the	DET
ddj-47	35	13	case	case	NOUN
ddj-47	35	14	of	of	ADP
ddj-47	35	15	hydrophily	hydrophily	PROPN
ddj-47	35	16	(	(	PUNCT
ddj-47	35	17	hydrophoby	hydrophoby	NOUN
ddj-47	35	18	)	)	PUNCT
ddj-47	35	19	due	due	ADP
ddj-47	35	20	to	to	ADP
ddj-47	35	21	the	the	DET
ddj-47	35	22	behavior	behavior	NOUN
ddj-47	35	23	of	of	ADP
ddj-47	35	24	magnetic	magnetic	ADJ
ddj-47	35	25	(	(	PUNCT
ddj-47	35	26	presumably	presumably	ADV
ddj-47	35	27	)	)	PUNCT
ddj-47	35	28	interaction	interaction	NOUN
ddj-47	35	29	energy	energy	NOUN
ddj-47	35	30	as	as	ADP
ddj-47	35	31	a	a	DET
ddj-47	35	32	function	function	NOUN
ddj-47	35	33	of	of	ADP
ddj-47	35	34	planck	planck	NOUN
ddj-47	35	35	constant	constant	ADJ
ddj-47	35	36	(	(	PUNCT
ddj-47	35	37	or	or	CCONJ
ddj-47	35	38	integers	integer	NOUN
ddj-47	35	39	characterizing	characterize	VERB
ddj-47	35	40	the	the	DET
ddj-47	35	41	level	level	NOUN
ddj-47	35	42	of	of	ADP
ddj-47	35	43	dark	dark	ADJ
ddj-47	35	44	matter	matter	NOUN
ddj-47	35	45	)	)	PUNCT
ddj-47	35	46	assignable	assignable	ADJ
ddj-47	35	47	to	to	ADP
ddj-47	35	48	the	the	DET
ddj-47	35	49	flux	flux	NOUN
ddj-47	35	50	tube	tube	NOUN
ddj-47	35	51	.	.	PUNCT
ddj-47	36	1	for	for	ADP
ddj-47	36	2	hydrophoby	hydrophoby	NOUN
ddj-47	36	3	(	(	PUNCT
ddj-47	36	4	hydrophily	hydrophily	NOUN
ddj-47	36	5	)	)	PUNCT
ddj-47	36	6	the	the	DET
ddj-47	36	7	interaction	interaction	NOUN
ddj-47	36	8	energy	energy	NOUN
ddj-47	36	9	is	be	AUX
ddj-47	36	10	minimized	minimize	VERB
ddj-47	36	11	for	for	ADP
ddj-47	36	12	long	long	ADJ
ddj-47	36	13	(	(	PUNCT
ddj-47	36	14	short	short	ADJ
ddj-47	36	15	)	)	PUNCT
ddj-47	36	16	flux	flux	NOUN
ddj-47	36	17	tubes	tube	NOUN
ddj-47	36	18	.	.	PUNCT
ddj-47	37	1	the	the	DET
ddj-47	37	2	interaction	interaction	NOUN
ddj-47	37	3	between	between	ADP
ddj-47	37	4	amino	amino	NOUN
ddj-47	37	5	-	-	PUNCT
ddj-47	37	6	acids	acid	NOUN
ddj-47	37	7	is	be	AUX
ddj-47	37	8	induced	induce	VERB
ddj-47	37	9	by	by	ADP
ddj-47	37	10	this	this	DET
ddj-47	37	11	interaction	interaction	NOUN
ddj-47	37	12	in	in	ADP
ddj-47	37	13	a	a	DET
ddj-47	37	14	manner	manner	NOUN
ddj-47	37	15	analogous	analogous	ADJ
ddj-47	37	16	to	to	ADP
ddj-47	37	17	how	how	SCONJ
ddj-47	37	18	the	the	DET
ddj-47	37	19	interaction	interaction	NOUN
ddj-47	37	20	between	between	ADP
ddj-47	37	21	electrons	electron	NOUN
ddj-47	37	22	and	and	CCONJ
ddj-47	37	23	ions	ion	NOUN
ddj-47	37	24	induces	induce	VERB
ddj-47	37	25	secondary	secondary	ADJ
ddj-47	37	26	interaction	interaction	NOUN
ddj-47	37	27	between	between	ADP
ddj-47	37	28	the	the	DET
ddj-47	37	29	members	member	NOUN
ddj-47	37	30	of	of	ADP
ddj-47	37	31	a	a	DET
ddj-47	37	32	cooper	cooper	NOUN
ddj-47	37	33	pair	pair	NOUN
ddj-47	37	34	.	.	PUNCT
ddj-47	38	1	the	the	DET
ddj-47	38	2	model	model	NOUN
ddj-47	38	3	explains	explain	VERB
ddj-47	38	4	the	the	DET
ddj-47	38	5	basic	basic	ADJ
ddj-47	38	6	qualitative	qualitative	ADJ
ddj-47	38	7	aspects	aspect	NOUN
ddj-47	38	8	of	of	ADP
ddj-47	38	9	protein	protein	NOUN
ddj-47	38	10	folding	folding	NOUN
ddj-47	38	11	and	and	CCONJ
ddj-47	38	12	the	the	DET
ddj-47	38	13	quantitative	quantitative	ADJ
ddj-47	38	14	model	model	NOUN
ddj-47	38	15	of	of	ADP
ddj-47	38	16	folding	folding	NOUN
ddj-47	38	17	based	base	VERB
ddj-47	38	18	on	on	ADP
ddj-47	38	19	amino	amino	NOUN
ddj-47	38	20	-	-	PUNCT
ddj-47	38	21	acid	acid	NOUN
ddj-47	38	22	-	-	PUNCT
ddj-47	38	23	amino	amino	NOUN
ddj-47	38	24	-	-	PUNCT
ddj-47	38	25	acid	acid	NOUN
ddj-47	38	26	flux	flux	NOUN
ddj-47	38	27	tubes	tube	NOUN
ddj-47	38	28	allows	allow	VERB
ddj-47	38	29	a	a	DET
ddj-47	38	30	generalization	generalization	NOUN
ddj-47	38	31	which	which	PRON
ddj-47	38	32	is	be	AUX
ddj-47	38	33	however	however	ADV
ddj-47	38	34	discussed	discuss	VERB
ddj-47	38	35	at	at	ADP
ddj-47	38	36	numerical	numerical	ADJ
ddj-47	38	37	level	level	NOUN
ddj-47	38	38	.	.	PUNCT
ddj-47	39	1	1	1	NUM
ddj-47	39	2	introduction	introduction	NOUN
ddj-47	39	3	the	the	DET
ddj-47	39	4	model	model	NOUN
ddj-47	39	5	for	for	ADP
ddj-47	39	6	the	the	DET
ddj-47	39	7	evolution	evolution	NOUN
ddj-47	39	8	of	of	ADP
ddj-47	39	9	the	the	DET
ddj-47	39	10	genetic	genetic	ADJ
ddj-47	39	11	code	code	NOUN
ddj-47	39	12	leads	lead	VERB
ddj-47	39	13	[	[	X
ddj-47	39	14	16	16	NUM
ddj-47	39	15	]	]	PUNCT
ddj-47	39	16	to	to	ADP
ddj-47	39	17	the	the	DET
ddj-47	39	18	idea	idea	NOUN
ddj-47	39	19	that	that	SCONJ
ddj-47	39	20	the	the	DET
ddj-47	39	21	folding	folding	NOUN
ddj-47	39	22	of	of	ADP
ddj-47	39	23	proteins	protein	NOUN
ddj-47	39	24	obeys	obey	VERB
ddj-47	39	25	a	a	DET
ddj-47	39	26	code	code	NOUN
ddj-47	39	27	inherited	inherit	VERB
ddj-47	39	28	from	from	ADP
ddj-47	39	29	the	the	DET
ddj-47	39	30	genetic	genetic	ADJ
ddj-47	39	31	code	code	NOUN
ddj-47	39	32	.	.	PUNCT
ddj-47	40	1	one	one	PRON
ddj-47	40	2	can	can	AUX
ddj-47	40	3	imagine	imagine	VERB
ddj-47	40	4	several	several	ADJ
ddj-47	40	5	variants	variant	NOUN
ddj-47	40	6	of	of	ADP
ddj-47	40	7	this	this	DET
ddj-47	40	8	code	code	NOUN
ddj-47	40	9	.	.	PUNCT
ddj-47	41	1	one	one	NUM
ddj-47	41	2	of	of	ADP
ddj-47	41	3	them	they	PRON
ddj-47	41	4	is	be	AUX
ddj-47	41	5	that	that	SCONJ
ddj-47	41	6	amino	amino	NOUN
ddj-47	41	7	-	-	PUNCT
ddj-47	41	8	acid	acid	NOUN
ddj-47	41	9	behaves	behave	NOUN
ddj-47	41	10	like	like	ADP
ddj-47	41	11	the	the	DET
ddj-47	41	12	conjugate	conjugate	ADJ
ddj-47	41	13	yc	yc	NOUN
ddj-47	41	14	of	of	ADP
ddj-47	41	15	the	the	DET
ddj-47	41	16	middle	middle	ADJ
ddj-47	41	17	nucleotide	nucleotide	NOUN
ddj-47	41	18	of	of	ADP
ddj-47	41	19	the	the	DET
ddj-47	41	20	codon	codon	NOUN
ddj-47	41	21	xy	xy	PROPN
ddj-47	42	1	z	z	NOUN
ddj-47	42	2	coding	code	VERB
ddj-47	42	3	for	for	ADP
ddj-47	42	4	it	it	PRON
ddj-47	42	5	.	.	PUNCT
ddj-47	43	1	conjugation	conjugation	NOUN
ddj-47	43	2	for	for	ADP
ddj-47	43	3	amino	amino	NOUN
ddj-47	43	4	-	-	PUNCT
ddj-47	43	5	acids	acid	NOUN
ddj-47	43	6	would	would	AUX
ddj-47	43	7	correspond	correspond	VERB
ddj-47	43	8	to	to	ADP
ddj-47	43	9	the	the	DET
ddj-47	43	10	hydrophilic	hydrophilic	ADJ
ddj-47	43	11	-	-	PUNCT
ddj-47	43	12	hydrophobic	hydrophobic	NOUN
ddj-47	43	13	dichotomy	dichotomy	NOUN
ddj-47	43	14	.	.	PUNCT
ddj-47	44	1	also	also	ADV
ddj-47	44	2	catalyst	catalyst	NOUN
ddj-47	44	3	action	action	NOUN
ddj-47	44	4	could	could	AUX
ddj-47	44	5	reduce	reduce	VERB
ddj-47	44	6	to	to	ADP
ddj-47	44	7	effective	effective	ADJ
ddj-47	44	8	base	base	NOUN
ddj-47	44	9	pairing	pair	VERB
ddj-47	44	10	in	in	ADP
ddj-47	44	11	this	this	DET
ddj-47	44	12	picture	picture	NOUN
ddj-47	44	13	chemically	chemically	ADV
ddj-47	44	14	and	and	CCONJ
ddj-47	44	15	at	at	ADP
ddj-47	44	16	the	the	DET
ddj-47	44	17	level	level	NOUN
ddj-47	44	18	of	of	ADP
ddj-47	44	19	quarks	quark	NOUN
ddj-47	44	20	associated	associate	VERB
ddj-47	44	21	with	with	ADP
ddj-47	44	22	the	the	DET
ddj-47	44	23	flux	flux	NOUN
ddj-47	44	24	tube	tube	NOUN
ddj-47	44	25	to	to	PART
ddj-47	44	26	matter	matter	VERB
ddj-47	44	27	antimatter	antimatter	NOUN
ddj-47	44	28	conjugation	conjugation	NOUN
ddj-47	44	29	.	.	PUNCT
ddj-47	45	1	the	the	DET
ddj-47	45	2	guess	guess	NOUN
ddj-47	45	3	that	that	SCONJ
ddj-47	45	4	amino	amino	NOUN
ddj-47	45	5	-	-	PUNCT
ddj-47	45	6	acid	acid	NOUN
ddj-47	45	7	and	and	CCONJ
ddj-47	45	8	its	its	PRON
ddj-47	45	9	conjugate	conjugate	ADJ
ddj-47	45	10	form	form	NOUN
ddj-47	45	11	pairs	pair	NOUN
ddj-47	45	12	turned	turn	VERB
ddj-47	45	13	out	out	ADP
ddj-47	45	14	to	to	PART
ddj-47	45	15	be	be	AUX
ddj-47	45	16	wrong	wrong	ADJ
ddj-47	45	17	however	however	ADV
ddj-47	45	18	and	and	CCONJ
ddj-47	45	19	after	after	ADP
ddj-47	45	20	various	various	ADJ
ddj-47	45	21	twists	twist	NOUN
ddj-47	45	22	and	and	CCONJ
ddj-47	45	23	turns	turn	NOUN
ddj-47	45	24	i	i	PRON
ddj-47	45	25	ended	end	VERB
ddj-47	45	26	up	up	ADP
ddj-47	45	27	with	with	ADP
ddj-47	45	28	the	the	DET
ddj-47	45	29	hypothesis	hypothesis	NOUN
ddj-47	45	30	that	that	PRON
ddj-47	45	31	the	the	DET
ddj-47	45	32	amino	amino	NOUN
ddj-47	45	33	-	-	PUNCT
ddj-47	45	34	acid	acid	NOUN
ddj-47	45	35	in	in	ADP
ddj-47	45	36	protein	protein	NOUN
ddj-47	45	37	behaves	behave	VERB
ddj-47	45	38	like	like	ADP
ddj-47	45	39	yczc	yczc	NOUN
ddj-47	45	40	where	where	SCONJ
ddj-47	45	41	z	z	NOUN
ddj-47	45	42	corresponds	correspond	VERB
ddj-47	45	43	to	to	ADP
ddj-47	45	44	third	third	ADJ
ddj-47	45	45	nucleotide	nucleotide	NOUN
ddj-47	45	46	for	for	ADP
ddj-47	45	47	some	some	DET
ddj-47	45	48	codon	codon	NOUN
ddj-47	45	49	coding	coding	NOUN
ddj-47	45	50	for	for	ADP
ddj-47	45	51	the	the	DET
ddj-47	45	52	amino	amino	NOUN
ddj-47	45	53	-	-	PUNCT
ddj-47	45	54	acid	acid	NOUN
ddj-47	45	55	.	.	PUNCT
ddj-47	46	1	there	there	PRON
ddj-47	46	2	exists	exist	VERB
ddj-47	46	3	a	a	DET
ddj-47	46	4	wonderful	wonderful	ADJ
ddj-47	46	5	book	book	NOUN
ddj-47	46	6	”	"	PUNCT
ddj-47	46	7	proteins	protein	NOUN
ddj-47	46	8	:	:	PUNCT
ddj-47	46	9	structures	structure	NOUN
ddj-47	46	10	and	and	CCONJ
ddj-47	46	11	molecular	molecular	ADJ
ddj-47	46	12	properties	property	NOUN
ddj-47	46	13	”	"	PUNCT
ddj-47	46	14	by	by	ADP
ddj-47	46	15	thomas	thomas	PROPN
ddj-47	46	16	e.	e.	PROPN
ddj-47	46	17	creighton	creighton	PROPN
ddj-47	46	18	published	publish	VERB
ddj-47	46	19	1993	1993	NUM
ddj-47	47	1	[	[	X
ddj-47	47	2	13	13	NUM
ddj-47	47	3	]	]	PUNCT
ddj-47	47	4	and	and	CCONJ
ddj-47	47	5	i	i	PRON
ddj-47	47	6	am	be	AUX
ddj-47	47	7	grateful	grateful	ADJ
ddj-47	47	8	for	for	ADP
ddj-47	47	9	timo	timo	PROPN
ddj-47	47	10	immonen	immonen	NOUN
ddj-47	47	11	for	for	ADP
ddj-47	47	12	possibility	possibility	NOUN
ddj-47	47	13	to	to	PART
ddj-47	47	14	use	use	VERB
ddj-47	47	15	the	the	DET
ddj-47	47	16	book	book	NOUN
ddj-47	47	17	.	.	PUNCT
ddj-47	48	1	in	in	ADP
ddj-47	48	2	the	the	DET
ddj-47	48	3	following	following	NOUN
ddj-47	48	4	i	i	PRON
ddj-47	48	5	freely	freely	ADV
ddj-47	48	6	refer	refer	VERB
ddj-47	48	7	to	to	ADP
ddj-47	48	8	the	the	DET
ddj-47	48	9	general	general	ADJ
ddj-47	48	10	facts	fact	NOUN
ddj-47	48	11	discussed	discuss	VERB
ddj-47	48	12	in	in	ADP
ddj-47	48	13	this	this	DET
ddj-47	48	14	book	book	NOUN
ddj-47	48	15	rather	rather	ADV
ddj-47	48	16	than	than	ADP
ddj-47	48	17	referring	refer	VERB
ddj-47	48	18	separately	separately	ADV
ddj-47	48	19	to	to	ADP
ddj-47	48	20	every	every	DET
ddj-47	48	21	detail	detail	NOUN
ddj-47	48	22	.	.	PUNCT
ddj-47	49	1	1.1	1.1	NUM
ddj-47	49	2	flux	flux	NOUN
ddj-47	49	3	tubes	tube	NOUN
ddj-47	49	4	as	as	ADP
ddj-47	49	5	correlates	correlate	NOUN
ddj-47	49	6	of	of	ADP
ddj-47	49	7	directed	direct	VERB
ddj-47	49	8	attention	attention	NOUN
ddj-47	49	9	at	at	ADP
ddj-47	49	10	molecular	molecular	ADJ
ddj-47	49	11	level	level	NOUN
ddj-47	49	12	after	after	ADP
ddj-47	49	13	some	some	DET
ddj-47	49	14	trials	trial	NOUN
ddj-47	49	15	one	one	PRON
ddj-47	49	16	ends	end	VERB
ddj-47	49	17	up	up	ADP
ddj-47	49	18	with	with	ADP
ddj-47	49	19	a	a	DET
ddj-47	49	20	general	general	ADJ
ddj-47	49	21	conceptualization	conceptualization	NOUN
ddj-47	49	22	of	of	ADP
ddj-47	49	23	the	the	DET
ddj-47	49	24	situation	situation	NOUN
ddj-47	49	25	with	with	ADP
ddj-47	49	26	the	the	DET
ddj-47	49	27	identification	identification	NOUN
ddj-47	49	28	of	of	ADP
ddj-47	49	29	(	(	PUNCT
ddj-47	49	30	”	"	PUNCT
ddj-47	49	31	wormhole	wormhole	NOUN
ddj-47	49	32	”	"	PUNCT
ddj-47	49	33	)	)	PUNCT
ddj-47	49	34	magnetic	magnetic	ADJ
ddj-47	49	35	flux	flux	NOUN
ddj-47	49	36	tubes	tube	NOUN
ddj-47	49	37	as	as	SCONJ
ddj-47	49	38	correlates	correlate	VERB
ddj-47	49	39	for	for	ADP
ddj-47	49	40	attention	attention	NOUN
ddj-47	49	41	at	at	ADP
ddj-47	49	42	molecular	molecular	ADJ
ddj-47	49	43	level	level	NOUN
ddj-47	49	44	so	so	SCONJ
ddj-47	49	45	that	that	SCONJ
ddj-47	49	46	a	a	DET
ddj-47	49	47	direct	direct	ADJ
ddj-47	49	48	connection	connection	NOUN
ddj-47	49	49	with	with	ADP
ddj-47	49	50	tgd	tgd	PROPN
ddj-47	49	51	inspired	inspire	VERB
ddj-47	49	52	theory	theory	NOUN
ddj-47	49	53	of	of	ADP
ddj-47	49	54	consciousness	consciousness	NOUN
ddj-47	49	55	emerges	emerge	VERB
ddj-47	49	56	at	at	ADP
ddj-47	49	57	quantitative	quantitative	ADJ
ddj-47	49	58	level	level	NOUN
ddj-47	49	59	.	.	PUNCT
ddj-47	50	1	whether	whether	SCONJ
ddj-47	50	2	wormhole	wormhole	NOUN
ddj-47	50	3	flux	flux	NOUN
ddj-47	50	4	tubes	tube	NOUN
ddj-47	50	5	or	or	CCONJ
ddj-47	50	6	ordinary	ordinary	ADJ
ddj-47	50	7	flux	flux	NOUN
ddj-47	50	8	tubes	tube	NOUN
ddj-47	50	9	are	be	AUX
ddj-47	50	10	needed	need	VERB
ddj-47	50	11	is	be	AUX
ddj-47	50	12	not	not	PART
ddj-47	50	13	a	a	DET
ddj-47	50	14	completely	completely	ADV
ddj-47	50	15	settled	settle	VERB
ddj-47	50	16	question	question	NOUN
ddj-47	50	17	yet	yet	ADV
ddj-47	50	18	and	and	CCONJ
ddj-47	50	19	the	the	DET
ddj-47	50	20	attribute	attribute	NOUN
ddj-47	50	21	”	"	PUNCT
ddj-47	50	22	wormhole	wormhole	NOUN
ddj-47	50	23	”	"	PUNCT
ddj-47	50	24	will	will	AUX
ddj-47	50	25	not	not	PART
ddj-47	50	26	be	be	AUX
ddj-47	50	27	used	use	VERB
ddj-47	50	28	in	in	ADP
ddj-47	50	29	the	the	DET
ddj-47	50	30	sequel	sequel	NOUN
ddj-47	50	31	.	.	PUNCT
ddj-47	51	1	this	this	PRON
ddj-47	51	2	suggests	suggest	VERB
ddj-47	51	3	a	a	DET
ddj-47	51	4	generalization	generalization	NOUN
ddj-47	51	5	of	of	ADP
ddj-47	51	6	the	the	DET
ddj-47	51	7	dna	dna	PROPN
ddj-47	51	8	as	as	ADP
ddj-47	51	9	topological	topological	ADJ
ddj-47	51	10	quantum	quantum	ADJ
ddj-47	51	11	computer	computer	NOUN
ddj-47	51	12	paradigm	paradigm	NOUN
ddj-47	51	13	making	make	VERB
ddj-47	51	14	it	it	PRON
ddj-47	51	15	much	much	ADV
ddj-47	51	16	more	more	ADV
ddj-47	51	17	detailed	detailed	ADJ
ddj-47	51	18	.	.	PUNCT
ddj-47	52	1	there	there	PRON
ddj-47	52	2	are	be	VERB
ddj-47	52	3	too	too	ADV
ddj-47	52	4	many	many	ADJ
ddj-47	52	5	uncertainties	uncertainty	NOUN
ddj-47	52	6	involved	involve	VERB
ddj-47	52	7	to	to	PART
ddj-47	52	8	allow	allow	VERB
ddj-47	52	9	anything	anything	PRON
ddj-47	52	10	except	except	SCONJ
ddj-47	52	11	playing	play	VERB
ddj-47	52	12	with	with	ADP
ddj-47	52	13	the	the	DET
ddj-47	52	14	options	option	NOUN
ddj-47	52	15	that	that	PRON
ddj-47	52	16	one	one	NOUN
ddj-47	52	17	is	be	AUX
ddj-47	52	18	able	able	ADJ
ddj-47	52	19	to	to	PART
ddj-47	52	20	imagine	imagine	VERB
ddj-47	52	21	.	.	PUNCT
ddj-47	53	1	there	there	PRON
ddj-47	53	2	are	be	VERB
ddj-47	53	3	two	two	NUM
ddj-47	53	4	kinds	kind	NOUN
ddj-47	53	5	of	of	ADP
ddj-47	53	6	flux	flux	NOUN
ddj-47	53	7	tubes	tube	NOUN
ddj-47	53	8	.	.	PUNCT
ddj-47	54	1	those	those	PRON
ddj-47	54	2	between	between	ADP
ddj-47	54	3	amino	amino	NOUN
ddj-47	54	4	-	-	PUNCT
ddj-47	54	5	acids	acid	NOUN
ddj-47	54	6	and	and	CCONJ
ddj-47	54	7	those	those	PRON
ddj-47	54	8	between	between	ADP
ddj-47	54	9	aminoacids	aminoacid	NOUN
ddj-47	54	10	and	and	CCONJ
ddj-47	54	11	water	water	NOUN
ddj-47	54	12	molecules	molecule	NOUN
ddj-47	54	13	.	.	PUNCT
ddj-47	55	1	the	the	DET
ddj-47	55	2	contractions	contraction	NOUN
ddj-47	55	3	of	of	ADP
ddj-47	55	4	flux	flux	NOUN
ddj-47	55	5	tubes	tube	NOUN
ddj-47	55	6	in	in	ADP
ddj-47	55	7	~	~	PUNCT
ddj-47	55	8	changing	change	VERB
ddj-47	55	9	phase	phase	NOUN
ddj-47	55	10	transitions	transition	NOUN
ddj-47	55	11	are	be	AUX
ddj-47	55	12	expected	expect	VERB
ddj-47	55	13	to	to	PART
ddj-47	55	14	be	be	AUX
ddj-47	55	15	important	important	ADJ
ddj-47	55	16	for	for	ADP
ddj-47	55	17	protein	protein	NOUN
ddj-47	55	18	folding	folding	NOUN
ddj-47	55	19	and	and	CCONJ
ddj-47	55	20	could	could	AUX
ddj-47	55	21	also	also	ADV
ddj-47	55	22	give	give	VERB
ddj-47	55	23	rise	rise	NOUN
ddj-47	55	24	to	to	ADP
ddj-47	55	25	the	the	DET
ddj-47	55	26	interaction	interaction	NOUN
ddj-47	55	27	responsible	responsible	ADJ
ddj-47	55	28	for	for	ADP
ddj-47	55	29	hydrophily	hydrophily	NOUN
ddj-47	55	30	and	and	CCONJ
ddj-47	55	31	hydrophoby	hydrophoby	NOUN
ddj-47	55	32	and	and	CCONJ
ddj-47	55	33	be	be	AUX
ddj-47	55	34	therefore	therefore	ADV
ddj-47	55	35	highly	highly	ADV
ddj-47	55	36	relevant	relevant	ADJ
ddj-47	55	37	for	for	ADP
ddj-47	55	38	protein	protein	NOUN
ddj-47	55	39	folding	folding	NOUN
ddj-47	55	40	.	.	PUNCT
ddj-47	56	1	what	what	PRON
ddj-47	56	2	is	be	AUX
ddj-47	56	3	the	the	DET
ddj-47	56	4	relative	relative	ADJ
ddj-47	56	5	importance	importance	NOUN
ddj-47	56	6	of	of	ADP
ddj-47	56	7	these	these	DET
ddj-47	56	8	two	two	NUM
ddj-47	56	9	kinds	kind	NOUN
ddj-47	56	10	of	of	ADP
ddj-47	56	11	flux	flux	NOUN
ddj-47	56	12	tubes	tube	NOUN
ddj-47	56	13	?	?	PUNCT
ddj-47	57	1	the	the	DET
ddj-47	57	2	first	first	ADJ
ddj-47	57	3	model	model	NOUN
ddj-47	57	4	assumed	assume	VERB
ddj-47	57	5	that	that	SCONJ
ddj-47	57	6	only	only	ADV
ddj-47	57	7	amino	amino	NOUN
ddj-47	57	8	-	-	PUNCT
ddj-47	57	9	acid	acid	NOUN
ddj-47	57	10	-	-	PUNCT
ddj-47	57	11	aminoacid	aminoacid	NOUN
ddj-47	57	12	flux	flux	NOUN
ddj-47	57	13	tubes	tube	NOUN
ddj-47	57	14	are	be	AUX
ddj-47	57	15	relevant	relevant	ADJ
ddj-47	57	16	and	and	CCONJ
ddj-47	57	17	assumed	assume	VERB
ddj-47	57	18	strong	strong	ADJ
ddj-47	57	19	selection	selection	NOUN
ddj-47	57	20	rules	rule	NOUN
ddj-47	57	21	inspired	inspire	VERB
ddj-47	57	22	by	by	ADP
ddj-47	57	23	dna	dna	PROPN
ddj-47	57	24	as	as	ADP
ddj-47	57	25	tqc	tqc	PROPN
ddj-47	57	26	model	model	NOUN
ddj-47	57	27	.	.	PUNCT
ddj-47	58	1	the	the	DET
ddj-47	58	2	second	second	ADJ
ddj-47	58	3	model	model	NOUN
ddj-47	58	4	which	which	PRON
ddj-47	58	5	emerged	emerge	VERB
ddj-47	58	6	year	year	NOUN
ddj-47	58	7	later	later	ADV
ddj-47	58	8	represents	represent	VERB
ddj-47	58	9	an	an	DET
ddj-47	58	10	extreme	extreme	NOUN
ddj-47	58	11	in	in	ADP
ddj-47	58	12	which	which	PRON
ddj-47	58	13	only	only	ADV
ddj-47	58	14	the	the	DET
ddj-47	58	15	flux	flux	NOUN
ddj-47	58	16	tube	tube	NOUN
ddj-47	58	17	connections	connection	NOUN
ddj-47	58	18	between	between	ADP
ddj-47	58	19	amino	amino	NOUN
ddj-47	58	20	-	-	PUNCT
ddj-47	58	21	acids	acid	NOUN
ddj-47	58	22	and	and	CCONJ
ddj-47	58	23	water	water	NOUN
ddj-47	58	24	molecules	molecule	NOUN
ddj-47	58	25	assumed	assume	VERB
ddj-47	58	26	to	to	PART
ddj-47	58	27	be	be	AUX
ddj-47	58	28	responsible	responsible	ADJ
ddj-47	58	29	for	for	ADP
ddj-47	58	30	hydrophily	hydrophily	NOUN
ddj-47	58	31	and	and	CCONJ
ddj-47	58	32	hydrophoby	hydrophoby	NOUN
ddj-47	58	33	induce	induce	VERB
ddj-47	58	34	the	the	DET
ddj-47	58	35	interactions	interaction	NOUN
ddj-47	58	36	between	between	ADP
ddj-47	58	37	amino	amino	NOUN
ddj-47	58	38	-	-	PUNCT
ddj-47	58	39	acids	acid	NOUN
ddj-47	58	40	as	as	ADP
ddj-47	58	41	secondary	secondary	ADJ
ddj-47	58	42	interactions	interaction	NOUN
ddj-47	58	43	.	.	PUNCT
ddj-47	59	1	this	this	DET
ddj-47	59	2	model	model	NOUN
ddj-47	59	3	works	work	VERB
ddj-47	59	4	surprisingly	surprisingly	ADV
ddj-47	59	5	well	well	ADV
ddj-47	59	6	at	at	ADP
ddj-47	59	7	qualitative	qualitative	ADJ
ddj-47	59	8	level	level	NOUN
ddj-47	59	9	.	.	PUNCT
ddj-47	60	1	1.2	1.2	NUM
ddj-47	60	2	the	the	DET
ddj-47	60	3	model	model	NOUN
ddj-47	60	4	of	of	ADP
ddj-47	60	5	folding	fold	VERB
ddj-47	60	6	code	code	NOUN
ddj-47	60	7	based	base	VERB
ddj-47	60	8	on	on	ADP
ddj-47	60	9	flux	flux	NOUN
ddj-47	60	10	tube	tube	NOUN
ddj-47	60	11	connections	connection	NOUN
ddj-47	60	12	between	between	ADP
ddj-47	60	13	aminoacids	aminoacid	NOUN
ddj-47	60	14	the	the	DET
ddj-47	60	15	first	first	ADJ
ddj-47	60	16	model	model	NOUN
ddj-47	60	17	assumes	assume	VERB
ddj-47	60	18	that	that	SCONJ
ddj-47	60	19	only	only	ADV
ddj-47	60	20	the	the	DET
ddj-47	60	21	flux	flux	NOUN
ddj-47	60	22	tubes	tube	NOUN
ddj-47	60	23	between	between	ADP
ddj-47	60	24	amino	amino	NOUN
ddj-47	60	25	-	-	PUNCT
ddj-47	60	26	acids	acid	NOUN
ddj-47	60	27	are	be	AUX
ddj-47	60	28	relevant	relevant	ADJ
ddj-47	60	29	for	for	ADP
ddj-47	60	30	protein	protein	NOUN
ddj-47	60	31	folding	folding	NOUN
ddj-47	60	32	.	.	PUNCT
ddj-47	61	1	issn	issn	PROPN
ddj-47	61	2	:	:	PUNCT
ddj-47	61	3	2159	2159	NUM
ddj-47	61	4	-	-	SYM
ddj-47	61	5	0465	0465	NUM
ddj-47	61	6	dna	dna	PROPN
ddj-47	61	7	decipher	decipher	PROPN
ddj-47	61	8	journal	journal	PROPN
ddj-47	61	9	june	june	PROPN
ddj-47	61	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	61	11	published	publish	VERB
ddj-47	61	12	by	by	ADP
ddj-47	61	13	quantumdream	quantumdream	PROPN
ddj-47	61	14	,	,	PUNCT
ddj-47	61	15	inc	inc	PROPN
ddj-47	61	16	.	.	PROPN
ddj-47	61	17	dna	dna	PROPN
ddj-47	61	18	decipher	decipher	PROPN
ddj-47	61	19	journal	journal	NOUN
ddj-47	62	1	|	|	ADV
ddj-47	62	2	may	may	AUX
ddj-47	62	3	2013	2013	NUM
ddj-47	62	4	|	|	ADV
ddj-47	62	5	volume	volume	NOUN
ddj-47	62	6	3	3	NUM
ddj-47	62	7	|	|	NOUN
ddj-47	62	8	issue	issue	VERB
ddj-47	62	9	1	1	NUM
ddj-47	62	10	|	|	ADV
ddj-47	62	11	pp	pp	ADJ
ddj-47	62	12	.	.	PUNCT
ddj-47	63	1	58	58	NUM
ddj-47	63	2	-	-	SYM
ddj-47	63	3	88	88	NUM
ddj-47	63	4	60	60	NUM
ddj-47	63	5	pitkänen	pitkänen	NOUN
ddj-47	63	6	,	,	PUNCT
ddj-47	63	7	m.	m.	NOUN
ddj-47	63	8	,	,	PUNCT
ddj-47	63	9	a	a	DET
ddj-47	63	10	model	model	NOUN
ddj-47	63	11	for	for	ADP
ddj-47	63	12	protein	protein	NOUN
ddj-47	63	13	folding	folding	NOUN
ddj-47	63	14	and	and	CCONJ
ddj-47	63	15	biocatalysis	biocatalysis	NOUN
ddj-47	63	16	1.2.1	1.2.1	NUM
ddj-47	63	17	what	what	PRON
ddj-47	63	18	kind	kind	NOUN
ddj-47	63	19	of	of	ADP
ddj-47	63	20	atoms	atom	NOUN
ddj-47	63	21	can	can	AUX
ddj-47	63	22	be	be	AUX
ddj-47	63	23	connected	connect	VERB
ddj-47	63	24	by	by	ADP
ddj-47	63	25	flux	flux	NOUN
ddj-47	63	26	tubes	tube	NOUN
ddj-47	63	27	?	?	PUNCT
ddj-47	64	1	1	1	X
ddj-47	64	2	.	.	PUNCT
ddj-47	64	3	hydrogen	hydrogen	NOUN
ddj-47	64	4	bonds	bond	NOUN
ddj-47	64	5	play	play	VERB
ddj-47	64	6	a	a	DET
ddj-47	64	7	key	key	ADJ
ddj-47	64	8	role	role	NOUN
ddj-47	64	9	in	in	ADP
ddj-47	64	10	bio	bio	NOUN
ddj-47	64	11	-	-	NOUN
ddj-47	64	12	catalysis	catalysis	NOUN
ddj-47	64	13	but	but	CCONJ
ddj-47	64	14	are	be	AUX
ddj-47	64	15	not	not	PART
ddj-47	64	16	understood	understand	VERB
ddj-47	64	17	completely	completely	ADV
ddj-47	64	18	satisfactorily	satisfactorily	ADV
ddj-47	64	19	in	in	ADP
ddj-47	64	20	the	the	DET
ddj-47	64	21	standard	standard	ADJ
ddj-47	64	22	chemistry	chemistry	NOUN
ddj-47	64	23	.	.	PUNCT
ddj-47	65	1	hence	hence	ADV
ddj-47	65	2	the	the	DET
ddj-47	65	3	basic	basic	ADJ
ddj-47	65	4	question	question	NOUN
ddj-47	65	5	is	be	AUX
ddj-47	65	6	whether	whether	SCONJ
ddj-47	65	7	hydrogen	hydrogen	NOUN
ddj-47	65	8	bonds	bond	NOUN
ddj-47	65	9	can	can	AUX
ddj-47	65	10	be	be	AUX
ddj-47	65	11	regarded	regard	VERB
ddj-47	65	12	as	as	ADP
ddj-47	65	13	or	or	CCONJ
ddj-47	65	14	are	be	AUX
ddj-47	65	15	accompanied	accompany	VERB
ddj-47	65	16	by	by	ADP
ddj-47	65	17	short	short	ADJ
ddj-47	65	18	(	(	PUNCT
ddj-47	65	19	wormhole	wormhole	NOUN
ddj-47	65	20	)	)	PUNCT
ddj-47	65	21	magnetic	magnetic	ADJ
ddj-47	65	22	flux	flux	NOUN
ddj-47	65	23	tubes	tube	NOUN
ddj-47	65	24	:	:	PUNCT
ddj-47	65	25	note	note	VERB
ddj-47	65	26	that	that	SCONJ
ddj-47	65	27	the	the	DET
ddj-47	65	28	subject	subject	ADJ
ddj-47	65	29	-	-	PUNCT
ddj-47	65	30	object	object	NOUN
ddj-47	65	31	asymmetry	asymmetry	NOUN
ddj-47	65	32	of	of	ADP
ddj-47	65	33	directed	direct	VERB
ddj-47	65	34	attention	attention	NOUN
ddj-47	65	35	would	would	AUX
ddj-47	65	36	correspond	correspond	VERB
ddj-47	65	37	to	to	ADP
ddj-47	65	38	donor	donor	NOUN
ddj-47	65	39	-	-	PUNCT
ddj-47	65	40	acceptor	acceptor	NOUN
ddj-47	65	41	asymmetry	asymmetry	NOUN
ddj-47	65	42	of	of	ADP
ddj-47	65	43	they	they	PRON
ddj-47	65	44	hydrogen	hydrogen	NOUN
ddj-47	65	45	bond	bond	NOUN
ddj-47	65	46	.	.	PUNCT
ddj-47	66	1	if	if	SCONJ
ddj-47	66	2	this	this	PRON
ddj-47	66	3	is	be	AUX
ddj-47	66	4	the	the	DET
ddj-47	66	5	case	case	NOUN
ddj-47	66	6	,	,	PUNCT
ddj-47	66	7	the	the	DET
ddj-47	66	8	identification	identification	NOUN
ddj-47	66	9	of	of	ADP
ddj-47	66	10	the	the	DET
ddj-47	66	11	magnetic	magnetic	ADJ
ddj-47	66	12	flux	flux	PROPN
ddj-47	66	13	tube	tube	NOUN
ddj-47	66	14	connection	connection	NOUN
ddj-47	66	15	as	as	ADP
ddj-47	66	16	a	a	DET
ddj-47	66	17	prerequisite	prerequisite	NOUN
ddj-47	66	18	for	for	ADP
ddj-47	66	19	a	a	DET
ddj-47	66	20	hydrogen	hydrogen	NOUN
ddj-47	66	21	bond	bond	NOUN
ddj-47	66	22	or	or	CCONJ
ddj-47	66	23	as	as	SCONJ
ddj-47	66	24	hydrogen	hydrogen	NOUN
ddj-47	66	25	bond	bond	NOUN
ddj-47	66	26	becomes	become	VERB
ddj-47	66	27	natural	natural	ADJ
ddj-47	66	28	.	.	PUNCT
ddj-47	67	1	at	at	ADP
ddj-47	67	2	least	least	ADJ
ddj-47	67	3	the	the	DET
ddj-47	67	4	atoms	atom	NOUN
ddj-47	67	5	able	able	ADJ
ddj-47	67	6	to	to	PART
ddj-47	67	7	form	form	VERB
ddj-47	67	8	hydrogen	hydrogen	NOUN
ddj-47	67	9	bonds	bond	NOUN
ddj-47	67	10	could	could	AUX
ddj-47	67	11	form	form	VERB
ddj-47	67	12	flux	flux	NOUN
ddj-47	67	13	tube	tube	NOUN
ddj-47	67	14	contacts	contact	NOUN
ddj-47	67	15	so	so	SCONJ
ddj-47	67	16	that	that	SCONJ
ddj-47	67	17	the	the	DET
ddj-47	67	18	model	model	NOUN
ddj-47	67	19	would	would	AUX
ddj-47	67	20	be	be	AUX
ddj-47	67	21	very	very	ADV
ddj-47	67	22	predictive	predictive	ADJ
ddj-47	67	23	and	and	CCONJ
ddj-47	67	24	would	would	AUX
ddj-47	67	25	conform	conform	VERB
ddj-47	67	26	with	with	ADP
ddj-47	67	27	the	the	DET
ddj-47	67	28	known	know	VERB
ddj-47	67	29	important	important	ADJ
ddj-47	67	30	role	role	NOUN
ddj-47	67	31	of	of	ADP
ddj-47	67	32	hydrogen	hydrogen	NOUN
ddj-47	67	33	bonds	bond	NOUN
ddj-47	67	34	in	in	ADP
ddj-47	67	35	bio	bio	NOUN
ddj-47	67	36	-	-	NOUN
ddj-47	67	37	catalysis	catalysis	NOUN
ddj-47	67	38	.	.	PUNCT
ddj-47	68	1	2	2	X
ddj-47	68	2	.	.	X
ddj-47	68	3	the	the	DET
ddj-47	68	4	fact	fact	NOUN
ddj-47	68	5	that	that	SCONJ
ddj-47	68	6	hydrogen	hydrogen	NOUN
ddj-47	68	7	bonds	bond	NOUN
ddj-47	68	8	connect	connect	VERB
ddj-47	68	9	base	base	NOUN
ddj-47	68	10	pairs	pair	NOUN
ddj-47	68	11	suggests	suggest	VERB
ddj-47	68	12	a	a	DET
ddj-47	68	13	generalization	generalization	NOUN
ddj-47	68	14	of	of	ADP
ddj-47	68	15	the	the	DET
ddj-47	68	16	notion	notion	NOUN
ddj-47	68	17	of	of	ADP
ddj-47	68	18	base	base	NOUN
ddj-47	68	19	pairing	pairing	NOUN
ddj-47	68	20	stating	state	VERB
ddj-47	68	21	that	that	SCONJ
ddj-47	68	22	under	under	ADP
ddj-47	68	23	some	some	DET
ddj-47	68	24	conditions	condition	NOUN
ddj-47	68	25	amino	amino	NOUN
ddj-47	68	26	-	-	PUNCT
ddj-47	68	27	acids	acid	NOUN
ddj-47	68	28	coded	code	VERB
ddj-47	68	29	by	by	ADP
ddj-47	68	30	xy	xy	PROPN
ddj-47	68	31	z	z	PROPN
ddj-47	68	32	and	and	CCONJ
ddj-47	68	33	uycv	uycv	NOUN
ddj-47	68	34	can	can	AUX
ddj-47	68	35	behave	behave	VERB
ddj-47	68	36	like	like	ADP
ddj-47	68	37	base	base	NOUN
ddj-47	68	38	pairs	pair	NOUN
ddj-47	68	39	.	.	PUNCT
ddj-47	69	1	these	these	DET
ddj-47	69	2	amino	amino	NOUN
ddj-47	69	3	-	-	PUNCT
ddj-47	69	4	acic	acic	NOUN
ddj-47	69	5	pairs	pair	NOUN
ddj-47	69	6	correspond	correspond	VERB
ddj-47	69	7	to	to	ADP
ddj-47	69	8	pairs	pair	NOUN
ddj-47	69	9	of	of	ADP
ddj-47	69	10	amino	amino	NOUN
ddj-47	69	11	-	-	PUNCT
ddj-47	69	12	acid	acid	NOUN
ddj-47	69	13	residues	residue	NOUN
ddj-47	69	14	which	which	PRON
ddj-47	69	15	are	be	AUX
ddj-47	69	16	hydrophilic	hydrophilic	ADJ
ddj-47	69	17	resp	resp	NOUN
ddj-47	69	18	.	.	PUNCT
ddj-47	70	1	hydrophobic	hydrophobic	NOUN
ddj-47	70	2	and	and	CCONJ
ddj-47	70	3	hydrophobic	hydrophobic	NOUN
ddj-47	70	4	residue	residue	NOUN
ddj-47	70	5	do	do	AUX
ddj-47	70	6	not	not	PART
ddj-47	70	7	form	form	VERB
ddj-47	70	8	hydrogen	hydrogen	NOUN
ddj-47	70	9	bonds	bond	NOUN
ddj-47	70	10	in	in	ADP
ddj-47	70	11	general	general	ADJ
ddj-47	70	12	.	.	PUNCT
ddj-47	71	1	these	these	DET
ddj-47	71	2	flux	flux	PROPN
ddj-47	71	3	tubes	tube	NOUN
ddj-47	71	4	would	would	AUX
ddj-47	71	5	thus	thus	ADV
ddj-47	71	6	be	be	AUX
ddj-47	71	7	more	more	ADV
ddj-47	71	8	general	general	ADJ
ddj-47	71	9	and	and	CCONJ
ddj-47	71	10	in	in	ADP
ddj-47	71	11	general	general	ADJ
ddj-47	71	12	long	long	ADV
ddj-47	71	13	.	.	PUNCT
ddj-47	72	1	the	the	DET
ddj-47	72	2	model	model	NOUN
ddj-47	72	3	for	for	ADP
ddj-47	72	4	dna	dna	PROPN
ddj-47	72	5	as	as	ADP
ddj-47	72	6	topological	topological	ADJ
ddj-47	72	7	quantum	quantum	ADJ
ddj-47	72	8	computer	computer	NOUN
ddj-47	72	9	requires	require	VERB
ddj-47	72	10	this	this	DET
ddj-47	72	11	kind	kind	NOUN
ddj-47	72	12	of	of	ADP
ddj-47	72	13	flux	flux	NOUN
ddj-47	72	14	tubes	tube	NOUN
ddj-47	72	15	and	and	CCONJ
ddj-47	72	16	they	they	PRON
ddj-47	72	17	would	would	AUX
ddj-47	72	18	in	in	ADP
ddj-47	72	19	general	general	ADJ
ddj-47	72	20	connect	connect	NOUN
ddj-47	72	21	atoms	atom	NOUN
ddj-47	72	22	or	or	CCONJ
ddj-47	72	23	molecules	molecule	NOUN
ddj-47	72	24	which	which	PRON
ddj-47	72	25	act	act	VERB
ddj-47	72	26	as	as	ADP
ddj-47	72	27	acceptors	acceptor	NOUN
ddj-47	72	28	in	in	ADP
ddj-47	72	29	hydrogen	hydrogen	NOUN
ddj-47	72	30	bonding	bonding	NOUN
ddj-47	72	31	:	:	PUNCT
ddj-47	72	32	o	o	X
ddj-47	72	33	=	=	PUNCT
ddj-47	72	34	atom	atom	NOUN
ddj-47	72	35	in	in	ADP
ddj-47	72	36	amino	amino	NOUN
ddj-47	72	37	-	-	PUNCT
ddj-47	72	38	acid	acid	ADJ
ddj-47	72	39	and	and	CCONJ
ddj-47	72	40	aromatic	aromatic	ADJ
ddj-47	72	41	ring	ring	NOUN
ddj-47	72	42	are	be	AUX
ddj-47	72	43	basic	basic	ADJ
ddj-47	72	44	examples	example	NOUN
ddj-47	72	45	.	.	PUNCT
ddj-47	73	1	3	3	X
ddj-47	73	2	.	.	X
ddj-47	73	3	if	if	SCONJ
ddj-47	73	4	one	one	PRON
ddj-47	73	5	assumes	assume	VERB
ddj-47	73	6	that	that	SCONJ
ddj-47	73	7	both	both	PRON
ddj-47	73	8	n	n	ADV
ddj-47	73	9	−h	−h	VERB
ddj-47	73	10	and	and	CCONJ
ddj-47	73	11	o	o	X
ddj-47	73	12	=	=	PUNCT
ddj-47	73	13	associated	associate	VERB
ddj-47	73	14	with	with	ADP
ddj-47	73	15	the	the	DET
ddj-47	73	16	constant	constant	ADJ
ddj-47	73	17	part	part	NOUN
ddj-47	73	18	of	of	ADP
ddj-47	73	19	the	the	DET
ddj-47	73	20	amino	amino	NOUN
ddj-47	73	21	-	-	PUNCT
ddj-47	73	22	acid	acid	NOUN
ddj-47	73	23	can	can	AUX
ddj-47	73	24	act	act	VERB
ddj-47	73	25	as	as	ADP
ddj-47	73	26	flux	flux	NOUN
ddj-47	73	27	tube	tube	NOUN
ddj-47	73	28	terminals	terminal	NOUN
ddj-47	73	29	and	and	CCONJ
ddj-47	73	30	represent	represent	VERB
ddj-47	73	31	z	z	PROPN
ddj-47	73	32	and	and	CCONJ
ddj-47	73	33	y	y	PROPN
ddj-47	73	34	nucleotides	nucleotide	NOUN
ddj-47	73	35	of	of	ADP
ddj-47	73	36	the	the	DET
ddj-47	73	37	codon	codon	NOUN
ddj-47	73	38	xy	xy	PROPN
ddj-47	73	39	z	z	NOUN
ddj-47	73	40	coding	code	VERB
ddj-47	73	41	for	for	ADP
ddj-47	73	42	the	the	DET
ddj-47	73	43	amino	amino	NOUN
ddj-47	73	44	-	-	PUNCT
ddj-47	73	45	acid	acid	NOUN
ddj-47	73	46	,	,	PUNCT
ddj-47	73	47	one	one	NOUN
ddj-47	73	48	obtains	obtain	VERB
ddj-47	73	49	y	y	NOUN
ddj-47	73	50	=	=	SYM
ddj-47	73	51	z	z	NOUN
ddj-47	73	52	pairing	pairing	NOUN
ddj-47	73	53	of	of	ADP
ddj-47	73	54	o	o	NOUN
ddj-47	73	55	=	=	SYM
ddj-47	73	56	−o	−o	PROPN
ddj-47	73	57	=	=	SYM
ddj-47	73	58	flux	flux	NOUN
ddj-47	73	59	tubes	tube	NOUN
ddj-47	73	60	are	be	AUX
ddj-47	73	61	allowed	allow	VERB
ddj-47	73	62	and	and	CCONJ
ddj-47	73	63	y	y	PROPN
ddj-47	73	64	=	=	PUNCT
ddj-47	73	65	zc	zc	PROPN
ddj-47	73	66	pairing	pair	VERB
ddj-47	73	67	if	if	SCONJ
ddj-47	73	68	only	only	ADJ
ddj-47	73	69	hydrogen	hydrogen	NOUN
ddj-47	73	70	bond	bond	NOUN
ddj-47	73	71	like	like	ADP
ddj-47	73	72	pairings	pairing	NOUN
ddj-47	73	73	are	be	AUX
ddj-47	73	74	allowed	allow	VERB
ddj-47	73	75	.	.	PUNCT
ddj-47	74	1	1.2.2	1.2.2	NUM
ddj-47	74	2	color	color	NOUN
ddj-47	74	3	inheritance	inheritance	NOUN
ddj-47	74	4	by	by	ADP
ddj-47	74	5	a	a	DET
ddj-47	74	6	reconnection	reconnection	NOUN
ddj-47	74	7	of	of	ADP
ddj-47	74	8	flux	flux	PROPN
ddj-47	74	9	tubes	tube	NOUN
ddj-47	74	10	1	1	NUM
ddj-47	74	11	.	.	PUNCT
ddj-47	75	1	there	there	PRON
ddj-47	75	2	should	should	AUX
ddj-47	75	3	exist	exist	VERB
ddj-47	75	4	some	some	DET
ddj-47	75	5	mechanism	mechanism	NOUN
ddj-47	75	6	allowing	allow	VERB
ddj-47	75	7	amino	amino	NOUN
ddj-47	75	8	-	-	PUNCT
ddj-47	75	9	acids	acid	NOUN
ddj-47	75	10	to	to	PART
ddj-47	75	11	inherit	inherit	VERB
ddj-47	75	12	the	the	DET
ddj-47	75	13	base	base	NOUN
ddj-47	75	14	pairing	pair	VERB
ddj-47	75	15	property	property	NOUN
ddj-47	75	16	from	from	ADP
ddj-47	75	17	the	the	DET
ddj-47	75	18	trnas	trnas	NOUN
ddj-47	75	19	associated	associate	VERB
ddj-47	75	20	with	with	ADP
ddj-47	75	21	them	they	PRON
ddj-47	75	22	so	so	SCONJ
ddj-47	75	23	that	that	SCONJ
ddj-47	75	24	one	one	PRON
ddj-47	75	25	can	can	AUX
ddj-47	75	26	identify	identify	VERB
ddj-47	75	27	amino	amino	NOUN
ddj-47	75	28	-	-	PUNCT
ddj-47	75	29	acid	acid	NOUN
ddj-47	75	30	with	with	ADP
ddj-47	75	31	the	the	DET
ddj-47	75	32	middle	middle	ADJ
ddj-47	75	33	nucleotide	nucleotide	NOUN
ddj-47	75	34	of	of	ADP
ddj-47	75	35	the	the	DET
ddj-47	75	36	codon	codon	NOUN
ddj-47	75	37	coding	code	VERB
ddj-47	75	38	it	it	PRON
ddj-47	75	39	.	.	PUNCT
ddj-47	76	1	if	if	SCONJ
ddj-47	76	2	trna	trna	PROPN
ddj-47	76	3	middle	middle	ADJ
ddj-47	76	4	nucleotide	nucleotide	NOUN
ddj-47	76	5	is	be	AUX
ddj-47	76	6	connected	connect	VERB
ddj-47	76	7	to	to	ADP
ddj-47	76	8	o	o	PROPN
ddj-47	76	9	=	=	PUNCT
ddj-47	76	10	of	of	ADP
ddj-47	76	11	the	the	DET
ddj-47	76	12	amino	amino	NOUN
ddj-47	76	13	-	-	PUNCT
ddj-47	76	14	acid	acid	NOUN
ddj-47	76	15	,	,	PUNCT
ddj-47	76	16	this	this	PRON
ddj-47	76	17	becomes	become	VERB
ddj-47	76	18	possible	possible	ADJ
ddj-47	76	19	since	since	SCONJ
ddj-47	76	20	the	the	DET
ddj-47	76	21	reconnection	reconnection	NOUN
ddj-47	76	22	of	of	ADP
ddj-47	76	23	flux	flux	PROPN
ddj-47	76	24	tubes	tube	NOUN
ddj-47	76	25	preserves	preserve	VERB
ddj-47	76	26	the	the	DET
ddj-47	76	27	”	"	PUNCT
ddj-47	76	28	color	color	NOUN
ddj-47	76	29	”	"	PUNCT
ddj-47	76	30	of	of	ADP
ddj-47	76	31	the	the	DET
ddj-47	76	32	flux	flux	NOUN
ddj-47	76	33	tubes	tube	NOUN
ddj-47	76	34	coded	code	VERB
ddj-47	76	35	by	by	ADP
ddj-47	76	36	(	(	PUNCT
ddj-47	76	37	a	a	DET
ddj-47	76	38	,	,	PUNCT
ddj-47	76	39	t	t	PROPN
ddj-47	76	40	,	,	PUNCT
ddj-47	76	41	g	g	PROPN
ddj-47	76	42	,	,	PUNCT
ddj-47	76	43	c	c	NOUN
ddj-47	76	44	)	)	PUNCT
ddj-47	76	45	that	that	PRON
ddj-47	76	46	is	be	AUX
ddj-47	76	47	by	by	ADP
ddj-47	76	48	the	the	DET
ddj-47	76	49	quark	quark	PROPN
ddj-47	76	50	or	or	CCONJ
ddj-47	76	51	anti	anti	ADJ
ddj-47	76	52	-	-	ADJ
ddj-47	76	53	quark	quark	ADJ
ddj-47	76	54	coding	coding	NOUN
ddj-47	76	55	for	for	ADP
ddj-47	76	56	the	the	DET
ddj-47	76	57	nucleotide	nucleotide	NOUN
ddj-47	76	58	.	.	PUNCT
ddj-47	77	1	the	the	DET
ddj-47	77	2	temporary	temporary	ADJ
ddj-47	77	3	formation	formation	NOUN
ddj-47	77	4	of	of	ADP
ddj-47	77	5	a	a	DET
ddj-47	77	6	hydrogen	hydrogen	NOUN
ddj-47	77	7	bond	bond	NOUN
ddj-47	77	8	between	between	ADP
ddj-47	77	9	n	n	X
ddj-47	77	10	−h	−h	ADJ
ddj-47	77	11	and	and	CCONJ
ddj-47	77	12	o	o	NOUN
ddj-47	78	1	=	=	PUNCT
ddj-47	78	2	of	of	ADP
ddj-47	78	3	two	two	NUM
ddj-47	78	4	amino	amino	NOUN
ddj-47	78	5	-	-	PUNCT
ddj-47	78	6	acids	acid	NOUN
ddj-47	78	7	as	as	ADP
ddj-47	78	8	in	in	ADP
ddj-47	78	9	the	the	DET
ddj-47	78	10	case	case	NOUN
ddj-47	78	11	of	of	ADP
ddj-47	78	12	alpha	alpha	ADJ
ddj-47	78	13	helix	helix	NOUN
ddj-47	78	14	would	would	AUX
ddj-47	78	15	allow	allow	VERB
ddj-47	78	16	n	n	PRON
ddj-47	78	17	−h	−h	VERB
ddj-47	78	18	to	to	PART
ddj-47	78	19	inherit	inherit	VERB
ddj-47	78	20	the	the	DET
ddj-47	78	21	conjugate	conjugate	NOUN
ddj-47	78	22	of	of	ADP
ddj-47	78	23	the	the	DET
ddj-47	78	24	color	color	NOUN
ddj-47	78	25	associated	associate	VERB
ddj-47	78	26	with	with	ADP
ddj-47	78	27	o	o	PROPN
ddj-47	78	28	=	=	PROPN
ddj-47	78	29	.	.	NOUN
ddj-47	78	30	alternative	alternative	ADJ
ddj-47	78	31	interpretation	interpretation	NOUN
ddj-47	78	32	is	be	AUX
ddj-47	78	33	that	that	SCONJ
ddj-47	78	34	this	this	DET
ddj-47	78	35	hydrogen	hydrogen	NOUN
ddj-47	78	36	bond	bond	NOUN
ddj-47	78	37	is	be	AUX
ddj-47	78	38	possible	possible	ADJ
ddj-47	78	39	only	only	ADV
ddj-47	78	40	if	if	SCONJ
ddj-47	78	41	the	the	DET
ddj-47	78	42	predetermined	predetermine	VERB
ddj-47	78	43	color	color	NOUN
ddj-47	78	44	of	of	ADP
ddj-47	78	45	n	n	PRON
ddj-47	78	46	−h	−h	ADV
ddj-47	78	47	is	be	AUX
ddj-47	78	48	consistent	consistent	ADJ
ddj-47	78	49	with	with	ADP
ddj-47	78	50	the	the	DET
ddj-47	78	51	inherited	inherit	VERB
ddj-47	78	52	one	one	NOUN
ddj-47	78	53	.	.	PUNCT
ddj-47	79	1	the	the	DET
ddj-47	79	2	inheritance	inheritance	NOUN
ddj-47	79	3	of	of	ADP
ddj-47	79	4	flux	flux	NOUN
ddj-47	79	5	tube	tube	NOUN
ddj-47	79	6	color	color	NOUN
ddj-47	79	7	would	would	AUX
ddj-47	79	8	be	be	AUX
ddj-47	79	9	a	a	DET
ddj-47	79	10	completely	completely	ADV
ddj-47	79	11	general	general	ADJ
ddj-47	79	12	mechanism	mechanism	NOUN
ddj-47	79	13	and	and	CCONJ
ddj-47	79	14	even	even	ADV
ddj-47	79	15	the	the	DET
ddj-47	79	16	donor	donor	NOUN
ddj-47	79	17	atoms	atom	NOUN
ddj-47	79	18	in	in	ADP
ddj-47	79	19	the	the	DET
ddj-47	79	20	residues	residue	NOUN
ddj-47	79	21	of	of	ADP
ddj-47	79	22	amino	amino	NOUN
ddj-47	79	23	-	-	PUNCT
ddj-47	79	24	acids	acid	NOUN
ddj-47	79	25	could	could	AUX
ddj-47	79	26	inherit	inherit	VERB
ddj-47	79	27	the	the	DET
ddj-47	79	28	color	color	NOUN
ddj-47	79	29	of	of	ADP
ddj-47	79	30	o	o	NOUN
ddj-47	79	31	=	=	PUNCT
ddj-47	79	32	in	in	ADP
ddj-47	79	33	this	this	DET
ddj-47	79	34	manner	manner	NOUN
ddj-47	79	35	.	.	PUNCT
ddj-47	80	1	2	2	X
ddj-47	80	2	.	.	X
ddj-47	80	3	a	a	DET
ddj-47	80	4	possible	possible	ADJ
ddj-47	80	5	interpretation	interpretation	NOUN
ddj-47	80	6	for	for	ADP
ddj-47	80	7	the	the	DET
ddj-47	80	8	fixing	fixing	NOUN
ddj-47	80	9	of	of	ADP
ddj-47	80	10	the	the	DET
ddj-47	80	11	flux	flux	NOUN
ddj-47	80	12	tube	tube	NOUN
ddj-47	80	13	color	color	NOUN
ddj-47	80	14	is	be	AUX
ddj-47	80	15	in	in	ADP
ddj-47	80	16	terms	term	NOUN
ddj-47	80	17	of	of	ADP
ddj-47	80	18	quantum	quantum	NOUN
ddj-47	80	19	measurement	measurement	NOUN
ddj-47	80	20	selecting	select	VERB
ddj-47	80	21	one	one	NUM
ddj-47	80	22	color	color	NOUN
ddj-47	80	23	from	from	ADP
ddj-47	80	24	quantum	quantum	ADJ
ddj-47	80	25	superposition	superposition	NOUN
ddj-47	80	26	in	in	ADP
ddj-47	80	27	the	the	DET
ddj-47	80	28	reconnection	reconnection	NOUN
ddj-47	80	29	process	process	NOUN
ddj-47	80	30	.	.	PUNCT
ddj-47	81	1	this	this	PRON
ddj-47	81	2	would	would	AUX
ddj-47	81	3	mean	mean	VERB
ddj-47	81	4	that	that	SCONJ
ddj-47	81	5	the	the	DET
ddj-47	81	6	unitary	unitary	ADJ
ddj-47	81	7	process	process	NOUN
ddj-47	81	8	can	can	AUX
ddj-47	81	9	bring	bring	VERB
ddj-47	81	10	superposition	superposition	NOUN
ddj-47	81	11	back	back	ADP
ddj-47	81	12	and	and	CCONJ
ddj-47	81	13	reconnection	reconnection	NOUN
ddj-47	81	14	process	process	NOUN
ddj-47	81	15	can	can	AUX
ddj-47	81	16	change	change	VERB
ddj-47	81	17	the	the	DET
ddj-47	81	18	inherited	inherit	VERB
ddj-47	81	19	color	color	NOUN
ddj-47	81	20	.	.	PUNCT
ddj-47	82	1	the	the	DET
ddj-47	82	2	hydrogen	hydrogen	NOUN
ddj-47	82	3	bonds	bond	NOUN
ddj-47	82	4	between	between	ADP
ddj-47	82	5	water	water	NOUN
ddj-47	82	6	molecules	molecule	NOUN
ddj-47	82	7	could	could	AUX
ddj-47	82	8	correspond	correspond	VERB
ddj-47	82	9	to	to	ADP
ddj-47	82	10	quantum	quantum	NOUN
ddj-47	82	11	superpositions	superposition	NOUN
ddj-47	82	12	of	of	ADP
ddj-47	82	13	different	different	ADJ
ddj-47	82	14	colors	color	NOUN
ddj-47	82	15	.	.	PUNCT
ddj-47	83	1	this	this	DET
ddj-47	83	2	superposition	superposition	NOUN
ddj-47	83	3	property	property	NOUN
ddj-47	83	4	might	might	AUX
ddj-47	83	5	relate	relate	VERB
ddj-47	83	6	to	to	ADP
ddj-47	83	7	the	the	DET
ddj-47	83	8	wobble	wobble	ADJ
ddj-47	83	9	base	base	NOUN
ddj-47	83	10	pairing	pair	VERB
ddj-47	83	11	phenomenon	phenomenon	NOUN
ddj-47	83	12	for	for	ADP
ddj-47	83	13	the	the	DET
ddj-47	83	14	third	third	ADJ
ddj-47	83	15	nucleotide	nucleotide	NOUN
ddj-47	83	16	in	in	ADP
ddj-47	83	17	trna	trna	PROPN
ddj-47	83	18	.	.	PUNCT
ddj-47	84	1	1.2.3	1.2.3	NUM
ddj-47	84	2	folding	fold	VERB
ddj-47	84	3	code	code	NOUN
ddj-47	84	4	the	the	DET
ddj-47	84	5	identification	identification	NOUN
ddj-47	84	6	of	of	ADP
ddj-47	84	7	n	n	NOUN
ddj-47	84	8	−h	−h	ADV
ddj-47	84	9	as	as	ADP
ddj-47	84	10	a	a	DET
ddj-47	84	11	representation	representation	NOUN
ddj-47	84	12	for	for	ADP
ddj-47	84	13	the	the	DET
ddj-47	84	14	conjugate	conjugate	NOUN
ddj-47	84	15	of	of	ADP
ddj-47	84	16	the	the	DET
ddj-47	84	17	third	third	ADJ
ddj-47	84	18	nucleotide	nucleotide	NOUN
ddj-47	84	19	z	z	PROPN
ddj-47	84	20	means	mean	VERB
ddj-47	84	21	that	that	SCONJ
ddj-47	84	22	amino	amino	NOUN
ddj-47	84	23	-	-	PUNCT
ddj-47	84	24	acids	acid	NOUN
ddj-47	84	25	would	would	AUX
ddj-47	84	26	remember	remember	VERB
ddj-47	84	27	which	which	DET
ddj-47	84	28	codon	codon	NOUN
ddj-47	84	29	coded	code	VERB
ddj-47	84	30	them	they	PRON
ddj-47	84	31	.	.	PUNCT
ddj-47	85	1	if	if	SCONJ
ddj-47	85	2	only	only	ADJ
ddj-47	85	3	hydrogen	hydrogen	NOUN
ddj-47	85	4	bond	bond	NOUN
ddj-47	85	5	like	like	ADP
ddj-47	85	6	flux	flux	NOUN
ddj-47	85	7	tubes	tube	NOUN
ddj-47	85	8	are	be	AUX
ddj-47	85	9	allowed	allow	VERB
ddj-47	85	10	,	,	PUNCT
ddj-47	85	11	flux	flux	PROPN
ddj-47	85	12	tubes	tube	NOUN
ddj-47	85	13	can	can	AUX
ddj-47	85	14	connect	connect	VERB
ddj-47	85	15	only	only	ADV
ddj-47	85	16	amino	amino	NOUN
ddj-47	85	17	-	-	PUNCT
ddj-47	85	18	acids	acid	NOUN
ddj-47	86	1	satisfying	satisfy	VERB
ddj-47	86	2	y	y	PROPN
ddj-47	86	3	=	=	SYM
ddj-47	86	4	zc	zc	PROPN
ddj-47	86	5	.	.	PUNCT
ddj-47	87	1	if	if	SCONJ
ddj-47	87	2	=	=	PRON
ddj-47	87	3	o	o	NOUN
ddj-47	87	4	−	−	NOUN
ddj-47	88	1	o	o	X
ddj-47	88	2	=	=	SYM
ddj-47	88	3	flux	flux	NOUN
ddj-47	88	4	tubes	tube	NOUN
ddj-47	88	5	are	be	AUX
ddj-47	88	6	allowed	allow	VERB
ddj-47	88	7	y	y	PROPN
ddj-47	88	8	=	=	SYM
ddj-47	88	9	z	z	NOUN
ddj-47	88	10	rule	rule	NOUN
ddj-47	88	11	favored	favor	VERB
ddj-47	88	12	by	by	ADP
ddj-47	88	13	the	the	DET
ddj-47	88	14	model	model	NOUN
ddj-47	88	15	of	of	ADP
ddj-47	88	16	dna	dna	PROPN
ddj-47	88	17	as	as	SCONJ
ddj-47	88	18	topological	topological	ADJ
ddj-47	88	19	quantum	quantum	ADJ
ddj-47	88	20	computer	computer	NOUN
ddj-47	88	21	follows	follow	VERB
ddj-47	88	22	.	.	PUNCT
ddj-47	89	1	the	the	DET
ddj-47	89	2	isospin	isospin	PROPN
ddj-47	89	3	symmetry	symmetry	NOUN
ddj-47	89	4	of	of	ADP
ddj-47	89	5	the	the	DET
ddj-47	89	6	third	third	ADJ
ddj-47	89	7	nucleotide	nucleotide	NOUN
ddj-47	89	8	implies	imply	VERB
ddj-47	89	9	that	that	SCONJ
ddj-47	89	10	both	both	DET
ddj-47	89	11	rules	rule	NOUN
ddj-47	89	12	are	be	AUX
ddj-47	89	13	quite	quite	ADV
ddj-47	89	14	flexible	flexible	ADJ
ddj-47	89	15	.	.	PUNCT
ddj-47	90	1	if	if	SCONJ
ddj-47	90	2	one	one	PRON
ddj-47	90	3	identifies	identify	VERB
ddj-47	90	4	hydrogen	hydrogen	NOUN
ddj-47	90	5	bond	bond	NOUN
ddj-47	90	6	with	with	ADP
ddj-47	90	7	flux	flux	NOUN
ddj-47	90	8	tube	tube	NOUN
ddj-47	90	9	(	(	PUNCT
ddj-47	90	10	y	y	PROPN
ddj-47	90	11	(	(	PUNCT
ddj-47	90	12	n	n	CCONJ
ddj-47	90	13	)	)	PUNCT
ddj-47	90	14	=	=	NOUN
ddj-47	90	15	z(n	z(n	PROPN
ddj-47	90	16	+	+	CCONJ
ddj-47	90	17	k	k	NOUN
ddj-47	90	18	)	)	PUNCT
ddj-47	90	19	)	)	PUNCT
ddj-47	90	20	the	the	DET
ddj-47	90	21	model	model	NOUN
ddj-47	90	22	works	work	VERB
ddj-47	90	23	badly	badly	ADV
ddj-47	90	24	for	for	ADP
ddj-47	90	25	both	both	DET
ddj-47	90	26	options	option	NOUN
ddj-47	90	27	.	.	PUNCT
ddj-47	91	1	if	if	SCONJ
ddj-47	91	2	one	one	PRON
ddj-47	91	3	assumes	assume	VERB
ddj-47	91	4	only	only	ADV
ddj-47	91	5	that	that	SCONJ
ddj-47	91	6	the	the	DET
ddj-47	91	7	presence	presence	NOUN
ddj-47	91	8	issn	issn	VERB
ddj-47	91	9	:	:	PUNCT
ddj-47	91	10	2159	2159	NUM
ddj-47	91	11	-	-	SYM
ddj-47	91	12	0465	0465	NUM
ddj-47	91	13	dna	dna	PROPN
ddj-47	91	14	decipher	decipher	PROPN
ddj-47	91	15	journal	journal	PROPN
ddj-47	91	16	june	june	PROPN
ddj-47	91	17	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	91	18	published	publish	VERB
ddj-47	91	19	by	by	ADP
ddj-47	91	20	quantumdream	quantumdream	PROPN
ddj-47	91	21	,	,	PUNCT
ddj-47	91	22	inc	inc	PROPN
ddj-47	91	23	.	.	PROPN
ddj-47	91	24	dna	dna	PROPN
ddj-47	91	25	decipher	decipher	PROPN
ddj-47	91	26	journal	journal	NOUN
ddj-47	91	27	|	|	ADV
ddj-47	91	28	may	may	AUX
ddj-47	91	29	2013	2013	NUM
ddj-47	91	30	|	|	ADV
ddj-47	91	31	volume	volume	NOUN
ddj-47	91	32	3	3	NUM
ddj-47	91	33	|	|	NOUN
ddj-47	91	34	issue	issue	VERB
ddj-47	91	35	1	1	NUM
ddj-47	91	36	|	|	ADV
ddj-47	91	37	pp	pp	ADJ
ddj-47	91	38	.	.	PUNCT
ddj-47	92	1	58	58	NUM
ddj-47	92	2	-	-	SYM
ddj-47	92	3	88	88	NUM
ddj-47	92	4	61	61	NUM
ddj-47	92	5	pitkänen	pitkänen	NOUN
ddj-47	92	6	,	,	PUNCT
ddj-47	92	7	m.	m.	NOUN
ddj-47	92	8	,	,	PUNCT
ddj-47	92	9	a	a	DET
ddj-47	92	10	model	model	NOUN
ddj-47	92	11	for	for	ADP
ddj-47	92	12	protein	protein	NOUN
ddj-47	92	13	folding	folding	NOUN
ddj-47	92	14	and	and	CCONJ
ddj-47	92	15	biocatalysis	biocatalysis	NOUN
ddj-47	92	16	of	of	ADP
ddj-47	92	17	a	a	DET
ddj-47	92	18	flux	flux	NOUN
ddj-47	92	19	tube	tube	NOUN
ddj-47	92	20	connecting	connect	VERB
ddj-47	92	21	amino	amino	NOUN
ddj-47	92	22	-	-	PUNCT
ddj-47	92	23	acids	acid	NOUN
ddj-47	92	24	in	in	ADP
ddj-47	92	25	either	either	DET
ddj-47	92	26	direction	direction	NOUN
ddj-47	92	27	(	(	PUNCT
ddj-47	92	28	y	y	PROPN
ddj-47	92	29	(	(	PUNCT
ddj-47	92	30	n	n	CCONJ
ddj-47	92	31	)	)	PUNCT
ddj-47	92	32	=	=	NOUN
ddj-47	92	33	z(n	z(n	PROPN
ddj-47	92	34	+	+	CCONJ
ddj-47	92	35	k	k	NOUN
ddj-47	92	36	)	)	PUNCT
ddj-47	92	37	or	or	CCONJ
ddj-47	92	38	z(n	z(n	NOUN
ddj-47	92	39	)	)	PUNCT
ddj-47	92	40	=	=	SYM
ddj-47	92	41	y	y	PROPN
ddj-47	92	42	(	(	PUNCT
ddj-47	92	43	n	n	PROPN
ddj-47	92	44	+	+	CCONJ
ddj-47	92	45	k	k	NOUN
ddj-47	92	46	)	)	PUNCT
ddj-47	92	47	)	)	PUNCT
ddj-47	92	48	is	be	AUX
ddj-47	92	49	a	a	DET
ddj-47	92	50	prerequisite	prerequisite	NOUN
ddj-47	92	51	for	for	ADP
ddj-47	92	52	the	the	DET
ddj-47	92	53	formation	formation	NOUN
ddj-47	92	54	of	of	ADP
ddj-47	92	55	hydrogen	hydrogen	NOUN
ddj-47	92	56	bond	bond	NOUN
ddj-47	92	57	,	,	PUNCT
ddj-47	92	58	the	the	DET
ddj-47	92	59	model	model	NOUN
ddj-47	92	60	works	work	VERB
ddj-47	92	61	.	.	PUNCT
ddj-47	93	1	y	y	NOUN
ddj-47	93	2	=	=	PUNCT
ddj-47	93	3	z	z	NOUN
ddj-47	93	4	rule	rule	NOUN
ddj-47	93	5	is	be	AUX
ddj-47	93	6	favored	favor	VERB
ddj-47	93	7	by	by	ADP
ddj-47	93	8	the	the	DET
ddj-47	93	9	study	study	NOUN
ddj-47	93	10	of	of	ADP
ddj-47	93	11	five	five	NUM
ddj-47	93	12	enzymes	enzyme	NOUN
ddj-47	93	13	:	:	PUNCT
ddj-47	93	14	the	the	DET
ddj-47	93	15	possible	possible	ADJ
ddj-47	93	16	average	average	ADJ
ddj-47	93	17	length	length	NOUN
ddj-47	93	18	of	of	ADP
ddj-47	93	19	alpha	alpha	ADJ
ddj-47	93	20	helix	helix	NOUN
ddj-47	93	21	is	be	AUX
ddj-47	93	22	considerably	considerably	ADV
ddj-47	93	23	longer	long	ADJ
ddj-47	93	24	than	than	ADP
ddj-47	93	25	the	the	DET
ddj-47	93	26	average	average	ADJ
ddj-47	93	27	length	length	NOUN
ddj-47	93	28	of	of	ADP
ddj-47	93	29	alpha	alpha	ADJ
ddj-47	93	30	helix	helix	NOUN
ddj-47	93	31	if	if	SCONJ
ddj-47	93	32	gene	gene	NOUN
ddj-47	93	33	is	be	AUX
ddj-47	93	34	the	the	DET
ddj-47	93	35	unique	unique	ADJ
ddj-47	93	36	gene	gene	NOUN
ddj-47	93	37	allowing	allow	VERB
ddj-47	93	38	to	to	PART
ddj-47	93	39	satisfy	satisfy	VERB
ddj-47	93	40	y	y	NOUN
ddj-47	93	41	=	=	PUNCT
ddj-47	93	42	z	z	NOUN
ddj-47	93	43	rule	rule	NOUN
ddj-47	93	44	.	.	PUNCT
ddj-47	94	1	the	the	DET
ddj-47	94	2	explicit	explicit	ADJ
ddj-47	94	3	study	study	NOUN
ddj-47	94	4	of	of	ADP
ddj-47	94	5	alpha	alpha	ADJ
ddj-47	94	6	helices	helix	NOUN
ddj-47	94	7	and	and	CCONJ
ddj-47	94	8	beta	beta	NOUN
ddj-47	94	9	sheets	sheet	NOUN
ddj-47	94	10	for	for	ADP
ddj-47	94	11	these	these	DET
ddj-47	94	12	enzymes	enzyme	NOUN
ddj-47	94	13	demonstrates	demonstrate	VERB
ddj-47	94	14	that	that	SCONJ
ddj-47	94	15	the	the	DET
ddj-47	94	16	failure	failure	NOUN
ddj-47	94	17	to	to	PART
ddj-47	94	18	satisfy	satisfy	VERB
ddj-47	94	19	the	the	DET
ddj-47	94	20	condition	condition	NOUN
ddj-47	94	21	for	for	ADP
ddj-47	94	22	the	the	DET
ddj-47	94	23	existence	existence	NOUN
ddj-47	94	24	of	of	ADP
ddj-47	94	25	hydrogen	hydrogen	NOUN
ddj-47	94	26	bond	bond	NOUN
ddj-47	94	27	fails	fail	VERB
ddj-47	94	28	rarely	rarely	ADV
ddj-47	94	29	and	and	CCONJ
ddj-47	94	30	at	at	ADP
ddj-47	94	31	most	most	ADJ
ddj-47	94	32	for	for	ADP
ddj-47	94	33	two	two	NUM
ddj-47	94	34	amino	amino	NOUN
ddj-47	94	35	-	-	PUNCT
ddj-47	94	36	acids	acid	NOUN
ddj-47	94	37	(	(	PUNCT
ddj-47	94	38	for	for	ADP
ddj-47	94	39	2	2	NUM
ddj-47	94	40	amino	amino	NOUN
ddj-47	94	41	-	-	PUNCT
ddj-47	94	42	acids	acid	NOUN
ddj-47	94	43	in	in	ADP
ddj-47	94	44	single	single	ADJ
ddj-47	94	45	case	case	NOUN
ddj-47	94	46	only	only	ADV
ddj-47	94	47	)	)	PUNCT
ddj-47	94	48	.	.	PUNCT
ddj-47	95	1	y	y	NOUN
ddj-47	95	2	=	=	PUNCT
ddj-47	95	3	z	z	NOUN
ddj-47	95	4	rule	rule	NOUN
ddj-47	95	5	could	could	AUX
ddj-47	95	6	mean	mean	VERB
ddj-47	95	7	a	a	DET
ddj-47	95	8	solution	solution	NOUN
ddj-47	95	9	of	of	ADP
ddj-47	95	10	the	the	DET
ddj-47	95	11	basic	basic	ADJ
ddj-47	95	12	problem	problem	NOUN
ddj-47	95	13	of	of	ADP
ddj-47	95	14	proteonics	proteonic	NOUN
ddj-47	95	15	:	:	PUNCT
ddj-47	95	16	do	do	AUX
ddj-47	95	17	genes	gene	NOUN
ddj-47	95	18	determine	determine	VERB
ddj-47	95	19	the	the	DET
ddj-47	95	20	folding	folding	NOUN
ddj-47	95	21	of	of	ADP
ddj-47	95	22	proteins	protein	NOUN
ddj-47	95	23	and	and	CCONJ
ddj-47	95	24	how	how	SCONJ
ddj-47	95	25	this	this	PRON
ddj-47	95	26	would	would	AUX
ddj-47	95	27	take	take	VERB
ddj-47	95	28	place	place	NOUN
ddj-47	95	29	?	?	PUNCT
ddj-47	96	1	the	the	DET
ddj-47	96	2	interpretation	interpretation	NOUN
ddj-47	96	3	would	would	AUX
ddj-47	96	4	be	be	AUX
ddj-47	96	5	that	that	SCONJ
ddj-47	96	6	the	the	DET
ddj-47	96	7	information	information	NOUN
ddj-47	96	8	loss	loss	NOUN
ddj-47	96	9	suggested	suggest	VERB
ddj-47	96	10	by	by	ADP
ddj-47	96	11	the	the	DET
ddj-47	96	12	many	many	ADJ
ddj-47	96	13	-	-	PUNCT
ddj-47	96	14	to	to	ADP
ddj-47	96	15	-	-	PUNCT
ddj-47	96	16	one	one	NUM
ddj-47	96	17	character	character	NOUN
ddj-47	96	18	of	of	ADP
ddj-47	96	19	the	the	DET
ddj-47	96	20	genetic	genetic	ADJ
ddj-47	96	21	code	code	NOUN
ddj-47	96	22	is	be	AUX
ddj-47	96	23	only	only	ADV
ddj-47	96	24	apparent	apparent	ADJ
ddj-47	96	25	.	.	PUNCT
ddj-47	97	1	the	the	DET
ddj-47	97	2	apparently	apparently	ADV
ddj-47	97	3	lost	lose	VERB
ddj-47	97	4	information	information	NOUN
ddj-47	97	5	which	which	PRON
ddj-47	97	6	corresponds	correspond	VERB
ddj-47	97	7	to	to	ADP
ddj-47	97	8	the	the	DET
ddj-47	97	9	a−g	a−g	NOUN
ddj-47	97	10	and	and	CCONJ
ddj-47	97	11	t	t	PROPN
ddj-47	97	12	−c	−c	ADJ
ddj-47	97	13	symmetries	symmetry	NOUN
ddj-47	97	14	of	of	ADP
ddj-47	97	15	the	the	DET
ddj-47	97	16	third	third	ADJ
ddj-47	97	17	nucleotide	nucleotide	NOUN
ddj-47	97	18	codes	code	NOUN
ddj-47	97	19	for	for	ADP
ddj-47	97	20	the	the	DET
ddj-47	97	21	hydrogen	hydrogen	NOUN
ddj-47	97	22	bonding	bonding	NOUN
ddj-47	97	23	and	and	CCONJ
ddj-47	97	24	hence	hence	ADV
ddj-47	97	25	for	for	ADP
ddj-47	97	26	the	the	DET
ddj-47	97	27	folding	folding	NOUN
ddj-47	97	28	of	of	ADP
ddj-47	97	29	the	the	DET
ddj-47	97	30	protein	protein	NOUN
ddj-47	97	31	.	.	PUNCT
ddj-47	98	1	the	the	DET
ddj-47	98	2	model	model	NOUN
ddj-47	98	3	in	in	ADP
ddj-47	98	4	its	its	PRON
ddj-47	98	5	most	most	ADV
ddj-47	98	6	stringent	stringent	ADJ
ddj-47	98	7	form	form	NOUN
ddj-47	98	8	is	be	AUX
ddj-47	98	9	easy	easy	ADJ
ddj-47	98	10	to	to	PART
ddj-47	98	11	kill	kill	VERB
ddj-47	98	12	since	since	ADV
ddj-47	98	13	in	in	ADP
ddj-47	98	14	the	the	DET
ddj-47	98	15	case	case	NOUN
ddj-47	98	16	of	of	ADP
ddj-47	98	17	alpha	alpha	NOUN
ddj-47	98	18	helices	helix	NOUN
ddj-47	98	19	and	and	CCONJ
ddj-47	98	20	beta	beta	NOUN
ddj-47	98	21	sheets	sheet	NOUN
ddj-47	98	22	the	the	DET
ddj-47	98	23	hydrogen	hydrogen	NOUN
ddj-47	98	24	bonding	bonding	NOUN
ddj-47	98	25	fixes	fix	NOUN
ddj-47	98	26	completely	completely	ADV
ddj-47	98	27	the	the	DET
ddj-47	98	28	dna	dna	PROPN
ddj-47	98	29	sequence	sequence	NOUN
ddj-47	98	30	coding	code	VERB
ddj-47	98	31	for	for	ADP
ddj-47	98	32	the	the	DET
ddj-47	98	33	protein	protein	NOUN
ddj-47	98	34	.	.	PUNCT
ddj-47	99	1	a	a	DET
ddj-47	99	2	weaker	weak	ADJ
ddj-47	99	3	variant	variant	NOUN
ddj-47	99	4	of	of	ADP
ddj-47	99	5	the	the	DET
ddj-47	99	6	model	model	NOUN
ddj-47	99	7	based	base	VERB
ddj-47	99	8	on	on	ADP
ddj-47	99	9	quantum	quantum	ADJ
ddj-47	99	10	variant	variant	NOUN
ddj-47	99	11	of	of	ADP
ddj-47	99	12	wobble	wobble	ADJ
ddj-47	99	13	base	base	NOUN
ddj-47	99	14	pairing	pairing	NOUN
ddj-47	99	15	:	:	PUNCT
ddj-47	99	16	in	in	ADP
ddj-47	99	17	this	this	DET
ddj-47	99	18	case	case	NOUN
ddj-47	99	19	there	there	PRON
ddj-47	99	20	are	be	VERB
ddj-47	99	21	no	no	DET
ddj-47	99	22	conditions	condition	NOUN
ddj-47	99	23	on	on	ADP
ddj-47	99	24	dna	dna	PROPN
ddj-47	99	25	sequence	sequence	NOUN
ddj-47	99	26	.	.	PUNCT
ddj-47	100	1	it	it	PRON
ddj-47	100	2	turns	turn	VERB
ddj-47	100	3	out	out	ADP
ddj-47	100	4	that	that	SCONJ
ddj-47	100	5	only	only	ADV
ddj-47	100	6	this	this	DET
ddj-47	100	7	variant	variant	ADJ
ddj-47	100	8	works	work	NOUN
ddj-47	100	9	.	.	PUNCT
ddj-47	101	1	hence	hence	ADV
ddj-47	101	2	hydrogen	hydrogen	PROPN
ddj-47	101	3	bonded	bond	VERB
ddj-47	101	4	amino	amino	NOUN
ddj-47	101	5	-	-	PUNCT
ddj-47	101	6	acid	acid	NOUN
ddj-47	101	7	behave	behave	NOUN
ddj-47	101	8	as	as	SCONJ
ddj-47	101	9	if	if	SCONJ
ddj-47	101	10	they	they	PRON
ddj-47	101	11	were	be	AUX
ddj-47	101	12	coded	code	VERB
ddj-47	101	13	by	by	ADP
ddj-47	101	14	the	the	DET
ddj-47	101	15	unique	unique	ADJ
ddj-47	101	16	codon	codon	NOUN
ddj-47	101	17	consistent	consistent	NOUN
ddj-47	101	18	with	with	ADP
ddj-47	101	19	y	y	PROPN
ddj-47	101	20	=	=	PUNCT
ddj-47	101	21	z	z	NOUN
ddj-47	101	22	rule	rule	NOUN
ddj-47	101	23	.	.	PUNCT
ddj-47	102	1	1.2.4	1.2.4	NUM
ddj-47	102	2	quantitative	quantitative	ADJ
ddj-47	102	3	model	model	NOUN
ddj-47	102	4	the	the	DET
ddj-47	102	5	quantitative	quantitative	ADJ
ddj-47	102	6	model	model	NOUN
ddj-47	102	7	relies	rely	VERB
ddj-47	102	8	on	on	ADP
ddj-47	102	9	the	the	DET
ddj-47	102	10	assumption	assumption	NOUN
ddj-47	102	11	that	that	SCONJ
ddj-47	102	12	the	the	DET
ddj-47	102	13	contribution	contribution	NOUN
ddj-47	102	14	of	of	ADP
ddj-47	102	15	a	a	DET
ddj-47	102	16	flux	flux	NOUN
ddj-47	102	17	tube	tube	NOUN
ddj-47	102	18	connecting	connect	VERB
ddj-47	102	19	two	two	NUM
ddj-47	102	20	amino	amino	NOUN
ddj-47	102	21	-	-	PUNCT
ddj-47	102	22	acids	acid	NOUN
ddj-47	102	23	to	to	ADP
ddj-47	102	24	the	the	DET
ddj-47	102	25	potential	potential	ADJ
ddj-47	102	26	energy	energy	NOUN
ddj-47	102	27	depends	depend	VERB
ddj-47	102	28	only	only	ADV
ddj-47	102	29	on	on	ADP
ddj-47	102	30	the	the	DET
ddj-47	102	31	distance	distance	NOUN
ddj-47	102	32	between	between	ADP
ddj-47	102	33	the	the	DET
ddj-47	102	34	molecules	molecule	NOUN
ddj-47	102	35	in	in	ADP
ddj-47	102	36	question	question	NOUN
ddj-47	102	37	.	.	PUNCT
ddj-47	103	1	the	the	DET
ddj-47	103	2	extremals	extremal	NOUN
ddj-47	103	3	of	of	ADP
ddj-47	103	4	the	the	DET
ddj-47	103	5	total	total	ADJ
ddj-47	103	6	interaction	interaction	NOUN
ddj-47	103	7	energy	energy	NOUN
ddj-47	103	8	are	be	AUX
ddj-47	103	9	same	same	ADJ
ddj-47	103	10	for	for	ADP
ddj-47	103	11	any	any	DET
ddj-47	103	12	choice	choice	NOUN
ddj-47	103	13	of	of	ADP
ddj-47	103	14	the	the	DET
ddj-47	103	15	potential	potential	NOUN
ddj-47	103	16	and	and	CCONJ
ddj-47	103	17	only	only	ADV
ddj-47	103	18	the	the	DET
ddj-47	103	19	absolute	absolute	ADJ
ddj-47	103	20	minimum	minimum	NOUN
ddj-47	103	21	of	of	ADP
ddj-47	103	22	the	the	DET
ddj-47	103	23	interaction	interaction	NOUN
ddj-47	103	24	energy	energy	NOUN
ddj-47	103	25	depends	depend	VERB
ddj-47	103	26	on	on	ADP
ddj-47	103	27	the	the	DET
ddj-47	103	28	choice	choice	NOUN
ddj-47	103	29	of	of	ADP
ddj-47	103	30	the	the	DET
ddj-47	103	31	potential	potential	NOUN
ddj-47	103	32	.	.	PUNCT
ddj-47	104	1	the	the	DET
ddj-47	104	2	simplest	simple	ADJ
ddj-47	104	3	potential	potential	ADJ
ddj-47	104	4	corresponds	correspond	NOUN
ddj-47	104	5	to	to	ADP
ddj-47	104	6	harmonic	harmonic	ADJ
ddj-47	104	7	oscillator	oscillator	NOUN
ddj-47	104	8	potential	potential	NOUN
ddj-47	104	9	and	and	CCONJ
ddj-47	104	10	would	would	AUX
ddj-47	104	11	explain	explain	VERB
ddj-47	104	12	formation	formation	NOUN
ddj-47	104	13	of	of	ADP
ddj-47	104	14	alpha	alpha	NOUN
ddj-47	104	15	helices	helix	NOUN
ddj-47	104	16	and	and	CCONJ
ddj-47	104	17	beta	beta	NOUN
ddj-47	104	18	sheets	sheet	NOUN
ddj-47	104	19	and	and	CCONJ
ddj-47	104	20	with	with	ADP
ddj-47	104	21	the	the	DET
ddj-47	104	22	fact	fact	NOUN
ddj-47	104	23	that	that	SCONJ
ddj-47	104	24	hydrophilic	hydrophilic	ADJ
ddj-47	104	25	and	and	CCONJ
ddj-47	104	26	hydrophobic	hydrophobic	NOUN
ddj-47	104	27	residues	residue	NOUN
ddj-47	104	28	tend	tend	VERB
ddj-47	104	29	to	to	PART
ddj-47	104	30	have	have	VERB
ddj-47	104	31	a	a	DET
ddj-47	104	32	large	large	ADJ
ddj-47	104	33	distance	distance	NOUN
ddj-47	104	34	and	and	CCONJ
ddj-47	104	35	only	only	ADV
ddj-47	104	36	few	few	ADJ
ddj-47	104	37	flux	flux	NOUN
ddj-47	104	38	tube	tube	NOUN
ddj-47	104	39	contacts	contact	NOUN
ddj-47	104	40	.	.	PUNCT
ddj-47	105	1	for	for	ADP
ddj-47	105	2	large	large	ADJ
ddj-47	105	3	planck	planck	NOUN
ddj-47	105	4	constant	constant	ADJ
ddj-47	105	5	also	also	ADV
ddj-47	105	6	long	long	ADJ
ddj-47	105	7	flux	flux	NOUN
ddj-47	105	8	tubes	tube	NOUN
ddj-47	105	9	could	could	AUX
ddj-47	105	10	correspond	correspond	VERB
ddj-47	105	11	to	to	ADP
ddj-47	105	12	attractive	attractive	ADJ
ddj-47	105	13	harmonic	harmonic	ADJ
ddj-47	105	14	oscillator	oscillator	NOUN
ddj-47	105	15	potential	potential	NOUN
ddj-47	105	16	.	.	PUNCT
ddj-47	106	1	also	also	ADV
ddj-47	106	2	the	the	DET
ddj-47	106	3	contribution	contribution	NOUN
ddj-47	106	4	of	of	ADP
ddj-47	106	5	other	other	ADJ
ddj-47	106	6	interactions	interaction	NOUN
ddj-47	106	7	between	between	ADP
ddj-47	106	8	neighboring	neighbor	VERB
ddj-47	106	9	amino	amino	NOUN
ddj-47	106	10	-	-	PUNCT
ddj-47	106	11	acids	acid	NOUN
ddj-47	106	12	are	be	AUX
ddj-47	106	13	expected	expect	VERB
ddj-47	106	14	to	to	PART
ddj-47	106	15	be	be	AUX
ddj-47	106	16	present	present	ADJ
ddj-47	106	17	but	but	CCONJ
ddj-47	106	18	are	be	AUX
ddj-47	106	19	neglected	neglect	VERB
ddj-47	106	20	in	in	ADP
ddj-47	106	21	the	the	DET
ddj-47	106	22	simplest	simple	ADJ
ddj-47	106	23	model	model	NOUN
ddj-47	106	24	.	.	PUNCT
ddj-47	107	1	the	the	DET
ddj-47	107	2	model	model	NOUN
ddj-47	107	3	predicts	predict	VERB
ddj-47	107	4	alpha	alpha	NOUN
ddj-47	107	5	helices	helix	NOUN
ddj-47	107	6	and	and	CCONJ
ddj-47	107	7	beta	beta	NOUN
ddj-47	107	8	sheets	sheet	NOUN
ddj-47	107	9	,	,	PUNCT
ddj-47	107	10	and	and	CCONJ
ddj-47	107	11	more	more	ADV
ddj-47	107	12	generally	generally	ADV
ddj-47	107	13	,	,	PUNCT
ddj-47	107	14	periodic	periodic	ADJ
ddj-47	107	15	structures	structure	NOUN
ddj-47	107	16	,	,	PUNCT
ddj-47	107	17	as	as	ADP
ddj-47	107	18	solutions	solution	NOUN
ddj-47	107	19	to	to	ADP
ddj-47	107	20	energy	energy	NOUN
ddj-47	107	21	minimization	minimization	NOUN
ddj-47	107	22	equations	equation	NOUN
ddj-47	107	23	.	.	PUNCT
ddj-47	108	1	1.3	1.3	NUM
ddj-47	108	2	a	a	DET
ddj-47	108	3	model	model	NOUN
ddj-47	108	4	for	for	ADP
ddj-47	108	5	protein	protein	NOUN
ddj-47	108	6	folding	folding	NOUN
ddj-47	108	7	based	base	VERB
ddj-47	108	8	on	on	ADP
ddj-47	108	9	flux	flux	NOUN
ddj-47	108	10	tubes	tube	NOUN
ddj-47	108	11	between	between	ADP
ddj-47	108	12	amino	amino	NOUN
ddj-47	108	13	-	-	PUNCT
ddj-47	108	14	acids	acid	NOUN
ddj-47	108	15	and	and	CCONJ
ddj-47	108	16	water	water	NOUN
ddj-47	108	17	molecules	molecule	NOUN
ddj-47	108	18	this	this	DET
ddj-47	108	19	model	model	NOUN
ddj-47	108	20	represents	represent	VERB
ddj-47	108	21	a	a	DET
ddj-47	108	22	diametrical	diametrical	ADJ
ddj-47	108	23	opposite	opposite	NOUN
ddj-47	108	24	of	of	ADP
ddj-47	108	25	the	the	DET
ddj-47	108	26	first	first	ADJ
ddj-47	108	27	model	model	NOUN
ddj-47	108	28	in	in	ADP
ddj-47	108	29	the	the	DET
ddj-47	108	30	sense	sense	NOUN
ddj-47	108	31	in	in	ADP
ddj-47	108	32	that	that	SCONJ
ddj-47	108	33	it	it	PRON
ddj-47	108	34	assumes	assume	VERB
ddj-47	108	35	flux	flux	NOUN
ddj-47	108	36	tube	tube	NOUN
ddj-47	108	37	connections	connection	NOUN
ddj-47	108	38	only	only	ADV
ddj-47	108	39	between	between	ADP
ddj-47	108	40	amino	amino	NOUN
ddj-47	108	41	-	-	PUNCT
ddj-47	108	42	acids	acid	NOUN
ddj-47	108	43	and	and	CCONJ
ddj-47	108	44	water	water	NOUN
ddj-47	108	45	molecules	molecule	NOUN
ddj-47	108	46	.	.	PUNCT
ddj-47	109	1	these	these	DET
ddj-47	109	2	flux	flux	PROPN
ddj-47	109	3	tubes	tube	NOUN
ddj-47	109	4	mediate	mediate	VERB
ddj-47	109	5	an	an	DET
ddj-47	109	6	attractive	attractive	ADJ
ddj-47	109	7	(	(	PUNCT
ddj-47	109	8	repulsive	repulsive	ADJ
ddj-47	109	9	)	)	PUNCT
ddj-47	109	10	interaction	interaction	NOUN
ddj-47	109	11	in	in	ADP
ddj-47	109	12	the	the	DET
ddj-47	109	13	case	case	NOUN
ddj-47	109	14	of	of	ADP
ddj-47	109	15	hydrophily	hydrophily	PROPN
ddj-47	109	16	(	(	PUNCT
ddj-47	109	17	hydrophoby	hydrophoby	NOUN
ddj-47	109	18	)	)	PUNCT
ddj-47	109	19	due	due	ADP
ddj-47	109	20	to	to	ADP
ddj-47	109	21	the	the	DET
ddj-47	109	22	behavior	behavior	NOUN
ddj-47	109	23	of	of	ADP
ddj-47	109	24	magnetic	magnetic	ADJ
ddj-47	109	25	(	(	PUNCT
ddj-47	109	26	presumably	presumably	ADV
ddj-47	109	27	)	)	PUNCT
ddj-47	109	28	interaction	interaction	NOUN
ddj-47	109	29	energy	energy	NOUN
ddj-47	109	30	as	as	ADP
ddj-47	109	31	a	a	DET
ddj-47	109	32	function	function	NOUN
ddj-47	109	33	of	of	ADP
ddj-47	109	34	planck	planck	NOUN
ddj-47	109	35	constant	constant	ADJ
ddj-47	109	36	(	(	PUNCT
ddj-47	109	37	or	or	CCONJ
ddj-47	109	38	integers	integer	NOUN
ddj-47	109	39	characterizing	characterize	VERB
ddj-47	109	40	the	the	DET
ddj-47	109	41	level	level	NOUN
ddj-47	109	42	of	of	ADP
ddj-47	109	43	dark	dark	ADJ
ddj-47	109	44	matter	matter	NOUN
ddj-47	109	45	)	)	PUNCT
ddj-47	109	46	assignable	assignable	ADJ
ddj-47	109	47	to	to	ADP
ddj-47	109	48	the	the	DET
ddj-47	109	49	flux	flux	NOUN
ddj-47	109	50	tube	tube	NOUN
ddj-47	109	51	.	.	PUNCT
ddj-47	110	1	for	for	ADP
ddj-47	110	2	hydrophoby	hydrophoby	NOUN
ddj-47	110	3	(	(	PUNCT
ddj-47	110	4	hydrophily	hydrophily	NOUN
ddj-47	110	5	)	)	PUNCT
ddj-47	110	6	the	the	DET
ddj-47	110	7	interaction	interaction	NOUN
ddj-47	110	8	energy	energy	NOUN
ddj-47	110	9	is	be	AUX
ddj-47	110	10	minimized	minimize	VERB
ddj-47	110	11	for	for	ADP
ddj-47	110	12	long	long	ADJ
ddj-47	110	13	(	(	PUNCT
ddj-47	110	14	short	short	ADJ
ddj-47	110	15	)	)	PUNCT
ddj-47	110	16	flux	flux	NOUN
ddj-47	110	17	tubes	tube	NOUN
ddj-47	110	18	.	.	PUNCT
ddj-47	111	1	the	the	DET
ddj-47	111	2	interaction	interaction	NOUN
ddj-47	111	3	between	between	ADP
ddj-47	111	4	amino	amino	NOUN
ddj-47	111	5	-	-	PUNCT
ddj-47	111	6	acids	acid	NOUN
ddj-47	111	7	is	be	AUX
ddj-47	111	8	induced	induce	VERB
ddj-47	111	9	by	by	ADP
ddj-47	111	10	this	this	DET
ddj-47	111	11	interaction	interaction	NOUN
ddj-47	111	12	in	in	ADP
ddj-47	111	13	a	a	DET
ddj-47	111	14	manner	manner	NOUN
ddj-47	111	15	analogous	analogous	ADJ
ddj-47	111	16	to	to	ADP
ddj-47	111	17	how	how	SCONJ
ddj-47	111	18	the	the	DET
ddj-47	111	19	interaction	interaction	NOUN
ddj-47	111	20	between	between	ADP
ddj-47	111	21	electrons	electron	NOUN
ddj-47	111	22	and	and	CCONJ
ddj-47	111	23	ions	ion	NOUN
ddj-47	111	24	induces	induce	VERB
ddj-47	111	25	secondary	secondary	ADJ
ddj-47	111	26	interaction	interaction	NOUN
ddj-47	111	27	between	between	ADP
ddj-47	111	28	the	the	DET
ddj-47	111	29	members	member	NOUN
ddj-47	111	30	of	of	ADP
ddj-47	111	31	a	a	DET
ddj-47	111	32	cooper	cooper	NOUN
ddj-47	111	33	pair	pair	NOUN
ddj-47	111	34	.	.	PUNCT
ddj-47	112	1	the	the	DET
ddj-47	112	2	model	model	NOUN
ddj-47	112	3	explains	explain	VERB
ddj-47	112	4	the	the	DET
ddj-47	112	5	basic	basic	ADJ
ddj-47	112	6	qualitative	qualitative	ADJ
ddj-47	112	7	aspects	aspect	NOUN
ddj-47	112	8	of	of	ADP
ddj-47	112	9	protein	protein	NOUN
ddj-47	112	10	folding	folding	NOUN
ddj-47	112	11	and	and	CCONJ
ddj-47	112	12	the	the	DET
ddj-47	112	13	quantitative	quantitative	ADJ
ddj-47	112	14	model	model	NOUN
ddj-47	112	15	of	of	ADP
ddj-47	112	16	folding	folding	NOUN
ddj-47	112	17	based	base	VERB
ddj-47	112	18	on	on	ADP
ddj-47	112	19	amino	amino	NOUN
ddj-47	112	20	-	-	PUNCT
ddj-47	112	21	acid	acid	NOUN
ddj-47	112	22	-	-	PUNCT
ddj-47	112	23	amino	amino	NOUN
ddj-47	112	24	-	-	PUNCT
ddj-47	112	25	acid	acid	NOUN
ddj-47	112	26	flux	flux	NOUN
ddj-47	112	27	tubes	tube	NOUN
ddj-47	112	28	allows	allow	VERB
ddj-47	112	29	a	a	DET
ddj-47	112	30	generalization	generalization	NOUN
ddj-47	112	31	which	which	PRON
ddj-47	112	32	is	be	AUX
ddj-47	112	33	however	however	ADV
ddj-47	112	34	discussed	discuss	VERB
ddj-47	112	35	at	at	ADP
ddj-47	112	36	numerical	numerical	ADJ
ddj-47	112	37	level	level	NOUN
ddj-47	112	38	.	.	PUNCT
ddj-47	113	1	several	several	ADJ
ddj-47	113	2	persons	person	NOUN
ddj-47	113	3	have	have	AUX
ddj-47	113	4	helped	help	VERB
ddj-47	113	5	me	i	PRON
ddj-47	113	6	in	in	ADP
ddj-47	113	7	writing	write	VERB
ddj-47	113	8	the	the	DET
ddj-47	113	9	chapter	chapter	NOUN
ddj-47	113	10	behind	behind	ADP
ddj-47	113	11	this	this	DET
ddj-47	113	12	article	article	NOUN
ddj-47	113	13	.	.	PUNCT
ddj-47	114	1	i	i	PRON
ddj-47	114	2	want	want	VERB
ddj-47	114	3	to	to	PART
ddj-47	114	4	express	express	VERB
ddj-47	114	5	my	my	PRON
ddj-47	114	6	gratitude	gratitude	NOUN
ddj-47	114	7	to	to	ADP
ddj-47	114	8	ulla	ulla	PROPN
ddj-47	114	9	mattfolk	mattfolk	NOUN
ddj-47	114	10	for	for	ADP
ddj-47	114	11	informing	inform	VERB
ddj-47	114	12	about	about	ADP
ddj-47	114	13	the	the	DET
ddj-47	114	14	idea	idea	NOUN
ddj-47	114	15	of	of	ADP
ddj-47	114	16	protein	protein	NOUN
ddj-47	114	17	folding	fold	VERB
ddj-47	114	18	code	code	NOUN
ddj-47	114	19	and	and	CCONJ
ddj-47	114	20	to	to	ADP
ddj-47	114	21	dale	dale	PROPN
ddj-47	114	22	trenary	trenary	NOUN
ddj-47	114	23	for	for	ADP
ddj-47	114	24	interesting	interesting	ADJ
ddj-47	114	25	discussions	discussion	NOUN
ddj-47	114	26	,	,	PUNCT
ddj-47	114	27	for	for	ADP
ddj-47	114	28	suggesting	suggest	VERB
ddj-47	114	29	proteins	protein	NOUN
ddj-47	114	30	which	which	PRON
ddj-47	114	31	could	could	AUX
ddj-47	114	32	allow	allow	VERB
ddj-47	114	33	to	to	PART
ddj-47	114	34	test	test	VERB
ddj-47	114	35	the	the	DET
ddj-47	114	36	model	model	NOUN
ddj-47	114	37	,	,	PUNCT
ddj-47	114	38	and	and	CCONJ
ddj-47	114	39	for	for	ADP
ddj-47	114	40	providing	provide	VERB
ddj-47	114	41	concrete	concrete	ADJ
ddj-47	114	42	help	help	NOUN
ddj-47	114	43	in	in	ADP
ddj-47	114	44	loading	load	VERB
ddj-47	114	45	data	datum	NOUN
ddj-47	114	46	help	help	NOUN
ddj-47	114	47	from	from	ADP
ddj-47	114	48	protein	protein	NOUN
ddj-47	114	49	data	datum	NOUN
ddj-47	114	50	bank	bank	NOUN
ddj-47	114	51	.	.	PUNCT
ddj-47	115	1	also	also	ADV
ddj-47	115	2	i	i	PRON
ddj-47	115	3	want	want	VERB
ddj-47	115	4	to	to	PART
ddj-47	115	5	thank	thank	VERB
ddj-47	115	6	timo	timo	PROPN
ddj-47	115	7	immonen	immonen	NOUN
ddj-47	115	8	for	for	ADP
ddj-47	115	9	discussions	discussion	NOUN
ddj-47	115	10	and	and	CCONJ
ddj-47	115	11	for	for	ADP
ddj-47	115	12	loaning	loan	VERB
ddj-47	115	13	the	the	DET
ddj-47	115	14	excellent	excellent	ADJ
ddj-47	115	15	book	book	NOUN
ddj-47	115	16	”	"	PUNCT
ddj-47	115	17	proteins	protein	NOUN
ddj-47	115	18	:	:	PUNCT
ddj-47	115	19	structures	structure	NOUN
ddj-47	115	20	and	and	CCONJ
ddj-47	115	21	molecular	molecular	ADJ
ddj-47	115	22	properties	property	NOUN
ddj-47	115	23	”	"	PUNCT
ddj-47	115	24	of	of	ADP
ddj-47	115	25	creighton	creighton	PROPN
ddj-47	115	26	.	.	PUNCT
ddj-47	116	1	i	i	PRON
ddj-47	116	2	am	be	AUX
ddj-47	116	3	also	also	ADV
ddj-47	116	4	grateful	grateful	ADJ
ddj-47	116	5	for	for	ADP
ddj-47	116	6	pekka	pekka	PROPN
ddj-47	116	7	rapinoja	rapinoja	PROPN
ddj-47	116	8	for	for	ADP
ddj-47	116	9	writing	write	VERB
ddj-47	116	10	the	the	DET
ddj-47	116	11	program	program	NOUN
ddj-47	116	12	transforming	transform	VERB
ddj-47	116	13	protein	protein	NOUN
ddj-47	116	14	data	datum	NOUN
ddj-47	116	15	file	file	NOUN
ddj-47	116	16	to	to	ADP
ddj-47	116	17	a	a	DET
ddj-47	116	18	form	form	NOUN
ddj-47	116	19	readable	readable	ADJ
ddj-47	116	20	by	by	ADP
ddj-47	116	21	matlab	matlab	PROPN
ddj-47	116	22	.	.	PUNCT
ddj-47	117	1	issn	issn	PROPN
ddj-47	117	2	:	:	PUNCT
ddj-47	117	3	2159	2159	NUM
ddj-47	117	4	-	-	SYM
ddj-47	117	5	0465	0465	NUM
ddj-47	117	6	dna	dna	PROPN
ddj-47	117	7	decipher	decipher	PROPN
ddj-47	117	8	journal	journal	PROPN
ddj-47	117	9	june	june	PROPN
ddj-47	117	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	117	11	published	publish	VERB
ddj-47	117	12	by	by	ADP
ddj-47	117	13	quantumdream	quantumdream	PROPN
ddj-47	117	14	,	,	PUNCT
ddj-47	117	15	inc	inc	PROPN
ddj-47	117	16	.	.	PROPN
ddj-47	117	17	dna	dna	PROPN
ddj-47	117	18	decipher	decipher	PROPN
ddj-47	117	19	journal	journal	NOUN
ddj-47	118	1	|	|	ADV
ddj-47	118	2	may	may	AUX
ddj-47	118	3	2013	2013	NUM
ddj-47	118	4	|	|	ADV
ddj-47	118	5	volume	volume	NOUN
ddj-47	118	6	3	3	NUM
ddj-47	118	7	|	|	NOUN
ddj-47	118	8	issue	issue	VERB
ddj-47	118	9	1	1	NUM
ddj-47	118	10	|	|	ADV
ddj-47	118	11	pp	pp	ADJ
ddj-47	118	12	.	.	PUNCT
ddj-47	119	1	58	58	NUM
ddj-47	119	2	-	-	SYM
ddj-47	119	3	88	88	NUM
ddj-47	119	4	62	62	NUM
ddj-47	119	5	pitkänen	pitkänen	NOUN
ddj-47	119	6	,	,	PUNCT
ddj-47	119	7	m.	m.	NOUN
ddj-47	119	8	,	,	PUNCT
ddj-47	119	9	a	a	DET
ddj-47	119	10	model	model	NOUN
ddj-47	119	11	for	for	ADP
ddj-47	119	12	protein	protein	NOUN
ddj-47	119	13	folding	folding	NOUN
ddj-47	119	14	and	and	CCONJ
ddj-47	119	15	biocatalysis	biocatalysis	NOUN
ddj-47	119	16	2	2	NUM
ddj-47	119	17	a	a	DET
ddj-47	119	18	model	model	NOUN
ddj-47	119	19	for	for	ADP
ddj-47	119	20	flux	flux	PROPN
ddj-47	119	21	tubes	tube	NOUN
ddj-47	119	22	biochemistry	biochemistry	NOUN
ddj-47	119	23	represents	represent	VERB
ddj-47	119	24	extremely	extremely	ADV
ddj-47	119	25	complex	complex	ADJ
ddj-47	119	26	and	and	CCONJ
ddj-47	119	27	refined	refined	ADJ
ddj-47	119	28	choreography	choreography	NOUN
ddj-47	119	29	.	.	PUNCT
ddj-47	120	1	it	it	PRON
ddj-47	120	2	is	be	AUX
ddj-47	120	3	hard	hard	ADJ
ddj-47	120	4	to	to	PART
ddj-47	120	5	believe	believe	VERB
ddj-47	120	6	that	that	SCONJ
ddj-47	120	7	this	this	PRON
ddj-47	120	8	reduces	reduce	VERB
ddj-47	120	9	to	to	ADP
ddj-47	120	10	a	a	DET
ddj-47	120	11	mere	mere	ADJ
ddj-47	120	12	unconscious	unconscious	ADJ
ddj-47	120	13	and	and	CCONJ
ddj-47	120	14	actually	actually	ADV
ddj-47	120	15	apparent	apparent	ADJ
ddj-47	120	16	fight	fight	NOUN
ddj-47	120	17	for	for	ADP
ddj-47	120	18	chemical	chemical	ADJ
ddj-47	120	19	survival	survival	NOUN
ddj-47	120	20	.	.	PUNCT
ddj-47	121	1	in	in	ADP
ddj-47	121	2	tgd	tgd	PROPN
ddj-47	121	3	universe	universe	ADJ
ddj-47	121	4	consciousness	consciousness	NOUN
ddj-47	121	5	would	would	AUX
ddj-47	121	6	be	be	AUX
ddj-47	121	7	involved	involve	VERB
ddj-47	121	8	even	even	ADV
ddj-47	121	9	at	at	ADP
ddj-47	121	10	the	the	DET
ddj-47	121	11	molecular	molecular	ADJ
ddj-47	121	12	level	level	NOUN
ddj-47	121	13	and	and	CCONJ
ddj-47	121	14	magnetic	magnetic	ADJ
ddj-47	121	15	body	body	NOUN
ddj-47	121	16	would	would	AUX
ddj-47	121	17	be	be	AUX
ddj-47	121	18	the	the	DET
ddj-47	121	19	choreographer	choreographer	NOUN
ddj-47	121	20	whose	whose	DET
ddj-47	121	21	dance	dance	NOUN
ddj-47	121	22	would	would	AUX
ddj-47	121	23	induce	induce	VERB
ddj-47	121	24	the	the	DET
ddj-47	121	25	molecular	molecular	ADJ
ddj-47	121	26	activities	activity	NOUN
ddj-47	121	27	.	.	PUNCT
ddj-47	122	1	this	this	DET
ddj-47	122	2	picture	picture	NOUN
ddj-47	122	3	combined	combine	VERB
ddj-47	122	4	with	with	ADP
ddj-47	122	5	the	the	DET
ddj-47	122	6	idea	idea	NOUN
ddj-47	122	7	of	of	ADP
ddj-47	122	8	standard	standard	ADJ
ddj-47	122	9	plugs	plug	NOUN
ddj-47	122	10	and	and	CCONJ
ddj-47	122	11	terminals	terminal	NOUN
ddj-47	122	12	at	at	ADP
ddj-47	122	13	which	which	PRON
ddj-47	122	14	flux	flux	NOUN
ddj-47	122	15	tubes	tube	NOUN
ddj-47	122	16	end	end	VERB
ddj-47	122	17	,	,	PUNCT
ddj-47	122	18	leads	lead	VERB
ddj-47	122	19	to	to	ADP
ddj-47	122	20	a	a	PRON
ddj-47	122	21	to	to	ADP
ddj-47	122	22	a	a	DET
ddj-47	122	23	picture	picture	NOUN
ddj-47	122	24	allowing	allow	VERB
ddj-47	122	25	to	to	PART
ddj-47	122	26	formulate	formulate	VERB
ddj-47	122	27	a	a	DET
ddj-47	122	28	model	model	NOUN
ddj-47	122	29	for	for	ADP
ddj-47	122	30	protein	protein	NOUN
ddj-47	122	31	folding	folding	NOUN
ddj-47	122	32	.	.	PUNCT
ddj-47	123	1	2.1	2.1	NUM
ddj-47	123	2	flux	flux	NOUN
ddj-47	123	3	tubes	tube	NOUN
ddj-47	123	4	as	as	ADP
ddj-47	123	5	a	a	DET
ddj-47	123	6	correlates	correlate	NOUN
ddj-47	123	7	for	for	ADP
ddj-47	123	8	directed	direct	VERB
ddj-47	123	9	attention	attention	NOUN
ddj-47	123	10	molecular	molecular	ADJ
ddj-47	123	11	survival	survival	NOUN
ddj-47	123	12	is	be	AUX
ddj-47	123	13	the	the	DET
ddj-47	123	14	standard	standard	ADJ
ddj-47	123	15	candidate	candidate	NOUN
ddj-47	123	16	for	for	ADP
ddj-47	123	17	the	the	DET
ddj-47	123	18	fundamental	fundamental	ADJ
ddj-47	123	19	variational	variational	ADJ
ddj-47	123	20	principle	principle	NOUN
ddj-47	123	21	motivating	motivate	VERB
ddj-47	123	22	the	the	DET
ddj-47	123	23	molecular	molecular	ADJ
ddj-47	123	24	intentional	intentional	ADJ
ddj-47	123	25	actions	action	NOUN
ddj-47	123	26	.	.	PUNCT
ddj-47	124	1	there	there	PRON
ddj-47	124	2	is	be	VERB
ddj-47	124	3	entire	entire	ADJ
ddj-47	124	4	hierarchy	hierarchy	NOUN
ddj-47	124	5	of	of	ADP
ddj-47	124	6	selves	self	NOUN
ddj-47	124	7	and	and	CCONJ
ddj-47	124	8	the	the	DET
ddj-47	124	9	survival	survival	NOUN
ddj-47	124	10	at	at	ADP
ddj-47	124	11	the	the	DET
ddj-47	124	12	higher	high	ADJ
ddj-47	124	13	level	level	NOUN
ddj-47	124	14	of	of	ADP
ddj-47	124	15	hierarchy	hierarchy	NOUN
ddj-47	124	16	would	would	AUX
ddj-47	124	17	force	force	VERB
ddj-47	124	18	co	co	NOUN
ddj-47	124	19	-	-	NOUN
ddj-47	124	20	operation	operation	NOUN
ddj-47	124	21	and	and	CCONJ
ddj-47	124	22	altruistic	altruistic	ADJ
ddj-47	124	23	behavior	behavior	NOUN
ddj-47	124	24	at	at	ADP
ddj-47	124	25	the	the	DET
ddj-47	124	26	lower	low	ADJ
ddj-47	124	27	levels	level	NOUN
ddj-47	124	28	.	.	PUNCT
ddj-47	125	1	one	one	PRON
ddj-47	125	2	might	might	AUX
ddj-47	125	3	hope	hope	VERB
ddj-47	125	4	that	that	SCONJ
ddj-47	125	5	this	this	DET
ddj-47	125	6	hypothesis	hypothesis	NOUN
ddj-47	125	7	reduces	reduce	VERB
ddj-47	125	8	to	to	ADP
ddj-47	125	9	negentropy	negentropy	PROPN
ddj-47	125	10	maximization	maximization	PROPN
ddj-47	125	11	principle	principle	NOUN
ddj-47	125	12	[	[	X
ddj-47	125	13	17	17	NUM
ddj-47	125	14	]	]	PUNCT
ddj-47	125	15	,	,	PUNCT
ddj-47	125	16	which	which	PRON
ddj-47	125	17	states	state	VERB
ddj-47	125	18	that	that	SCONJ
ddj-47	125	19	the	the	DET
ddj-47	125	20	information	information	NOUN
ddj-47	125	21	contents	content	NOUN
ddj-47	125	22	of	of	ADP
ddj-47	125	23	conscious	conscious	ADJ
ddj-47	125	24	experience	experience	NOUN
ddj-47	125	25	is	be	AUX
ddj-47	125	26	maximized	maximize	VERB
ddj-47	125	27	.	.	PUNCT
ddj-47	126	1	if	if	SCONJ
ddj-47	126	2	this	this	DET
ddj-47	126	3	picture	picture	NOUN
ddj-47	126	4	is	be	AUX
ddj-47	126	5	accepted	accept	VERB
ddj-47	126	6	,	,	PUNCT
ddj-47	126	7	the	the	DET
ddj-47	126	8	evolution	evolution	NOUN
ddj-47	126	9	of	of	ADP
ddj-47	126	10	molecular	molecular	ADJ
ddj-47	126	11	system	system	NOUN
ddj-47	126	12	becomes	become	VERB
ddj-47	126	13	analogous	analogous	ADJ
ddj-47	126	14	to	to	ADP
ddj-47	126	15	the	the	DET
ddj-47	126	16	evolution	evolution	NOUN
ddj-47	126	17	of	of	ADP
ddj-47	126	18	a	a	DET
ddj-47	126	19	society	society	NOUN
ddj-47	126	20	.	.	PUNCT
ddj-47	127	1	directed	direct	VERB
ddj-47	127	2	attention	attention	NOUN
ddj-47	127	3	is	be	AUX
ddj-47	127	4	the	the	DET
ddj-47	127	5	basic	basic	ADJ
ddj-47	127	6	aspect	aspect	NOUN
ddj-47	127	7	of	of	ADP
ddj-47	127	8	consciousness	consciousness	NOUN
ddj-47	127	9	and	and	CCONJ
ddj-47	127	10	the	the	DET
ddj-47	127	11	natural	natural	ADJ
ddj-47	127	12	guess	guess	NOUN
ddj-47	127	13	would	would	AUX
ddj-47	127	14	be	be	AUX
ddj-47	127	15	that	that	SCONJ
ddj-47	127	16	directed	direct	VERB
ddj-47	127	17	attention	attention	NOUN
ddj-47	127	18	corresponds	correspond	VERB
ddj-47	127	19	to	to	ADP
ddj-47	127	20	the	the	DET
ddj-47	127	21	formation	formation	NOUN
ddj-47	127	22	of	of	ADP
ddj-47	127	23	magnetic	magnetic	ADJ
ddj-47	127	24	flux	flux	NOUN
ddj-47	127	25	tubes	tube	NOUN
ddj-47	127	26	between	between	ADP
ddj-47	127	27	subject	subject	NOUN
ddj-47	127	28	and	and	CCONJ
ddj-47	127	29	target	target	NOUN
ddj-47	127	30	.	.	PUNCT
ddj-47	128	1	the	the	DET
ddj-47	128	2	directedness	directedness	NOUN
ddj-47	128	3	property	property	NOUN
ddj-47	128	4	requires	require	VERB
ddj-47	128	5	some	some	DET
ddj-47	128	6	manner	manner	NOUN
ddj-47	128	7	to	to	PART
ddj-47	128	8	order	order	VERB
ddj-47	128	9	the	the	DET
ddj-47	128	10	subject	subject	NOUN
ddj-47	128	11	and	and	CCONJ
ddj-47	128	12	target	target	NOUN
ddj-47	128	13	.	.	PUNCT
ddj-47	129	1	1	1	X
ddj-47	129	2	.	.	X
ddj-47	129	3	the	the	DET
ddj-47	129	4	ordering	ordering	NOUN
ddj-47	129	5	by	by	ADP
ddj-47	129	6	the	the	DET
ddj-47	129	7	values	value	NOUN
ddj-47	129	8	of	of	ADP
ddj-47	129	9	planck	planck	NOUN
ddj-47	129	10	constant	constant	ADJ
ddj-47	129	11	is	be	AUX
ddj-47	129	12	what	what	PRON
ddj-47	129	13	first	first	ADV
ddj-47	129	14	comes	come	VERB
ddj-47	129	15	in	in	ADP
ddj-47	129	16	mind	mind	NOUN
ddj-47	129	17	.	.	PUNCT
ddj-47	130	1	the	the	DET
ddj-47	130	2	larger	large	ADJ
ddj-47	130	3	space	space	NOUN
ddj-47	130	4	-	-	PUNCT
ddj-47	130	5	time	time	NOUN
ddj-47	130	6	sheet	sheet	NOUN
ddj-47	130	7	characterized	characterize	VERB
ddj-47	130	8	by	by	ADP
ddj-47	130	9	a	a	DET
ddj-47	130	10	larger	large	ADJ
ddj-47	130	11	value	value	NOUN
ddj-47	130	12	of	of	ADP
ddj-47	130	13	planck	planck	NOUN
ddj-47	130	14	constant	constant	ADJ
ddj-47	130	15	and	and	CCONJ
ddj-47	130	16	thus	thus	ADV
ddj-47	130	17	at	at	ADP
ddj-47	130	18	a	a	DET
ddj-47	130	19	higher	high	ADJ
ddj-47	130	20	level	level	NOUN
ddj-47	130	21	of	of	ADP
ddj-47	130	22	evolutionary	evolutionary	ADJ
ddj-47	130	23	hierarchy	hierarchy	NOUN
ddj-47	130	24	would	would	AUX
ddj-47	130	25	direct	direct	VERB
ddj-47	130	26	its	its	PRON
ddj-47	130	27	attention	attention	NOUN
ddj-47	130	28	to	to	ADP
ddj-47	130	29	the	the	DET
ddj-47	130	30	smaller	small	ADJ
ddj-47	130	31	one	one	NOUN
ddj-47	130	32	.	.	PUNCT
ddj-47	131	1	2	2	NUM
ddj-47	131	2	.	.	X
ddj-47	131	3	also	also	ADV
ddj-47	131	4	the	the	DET
ddj-47	131	5	ordering	ordering	NOUN
ddj-47	131	6	by	by	ADP
ddj-47	131	7	the	the	DET
ddj-47	131	8	value	value	NOUN
ddj-47	131	9	of	of	ADP
ddj-47	131	10	p	p	NOUN
ddj-47	131	11	-	-	PUNCT
ddj-47	131	12	adic	adic	ADJ
ddj-47	131	13	prime	prime	NOUN
ddj-47	131	14	characterizing	characterize	VERB
ddj-47	131	15	the	the	DET
ddj-47	131	16	size	size	NOUN
ddj-47	131	17	scale	scale	NOUN
ddj-47	131	18	of	of	ADP
ddj-47	131	19	the	the	DET
ddj-47	131	20	space	space	NOUN
ddj-47	131	21	-	-	PUNCT
ddj-47	131	22	time	time	NOUN
ddj-47	131	23	sheet	sheet	NOUN
ddj-47	131	24	could	could	AUX
ddj-47	131	25	be	be	AUX
ddj-47	131	26	considered	consider	VERB
ddj-47	131	27	but	but	CCONJ
ddj-47	131	28	in	in	ADP
ddj-47	131	29	this	this	DET
ddj-47	131	30	case	case	NOUN
ddj-47	131	31	directedness	directedness	NOUN
ddj-47	131	32	could	could	AUX
ddj-47	131	33	be	be	AUX
ddj-47	131	34	questioned	question	VERB
ddj-47	131	35	.	.	PUNCT
ddj-47	132	1	3	3	X
ddj-47	132	2	.	.	X
ddj-47	132	3	attention	attention	NOUN
ddj-47	132	4	can	can	AUX
ddj-47	132	5	be	be	AUX
ddj-47	132	6	directed	direct	VERB
ddj-47	132	7	also	also	ADV
ddj-47	132	8	to	to	ADP
ddj-47	132	9	thoughts	thought	NOUN
ddj-47	132	10	.	.	PUNCT
ddj-47	133	1	could	could	AUX
ddj-47	133	2	this	this	PRON
ddj-47	133	3	mean	mean	VERB
ddj-47	133	4	that	that	SCONJ
ddj-47	133	5	attention	attention	NOUN
ddj-47	133	6	is	be	AUX
ddj-47	133	7	directed	direct	VERB
ddj-47	133	8	from	from	ADP
ddj-47	133	9	real	real	ADJ
ddj-47	133	10	space	space	NOUN
ddj-47	133	11	-	-	PUNCT
ddj-47	133	12	time	time	NOUN
ddj-47	133	13	sheets	sheet	NOUN
ddj-47	133	14	to	to	ADP
ddj-47	133	15	p	p	NOUN
ddj-47	133	16	-	-	PUNCT
ddj-47	133	17	adic	adic	ADJ
ddj-47	133	18	space	space	NOUN
ddj-47	133	19	-	-	PUNCT
ddj-47	133	20	time	time	NOUN
ddj-47	133	21	sheets	sheet	NOUN
ddj-47	133	22	for	for	ADP
ddj-47	133	23	various	various	ADJ
ddj-47	133	24	values	value	NOUN
ddj-47	133	25	of	of	ADP
ddj-47	133	26	primes	prime	NOUN
ddj-47	133	27	but	but	CCONJ
ddj-47	133	28	not	not	PART
ddj-47	133	29	vice	vice	ADV
ddj-47	133	30	versa	versa	ADV
ddj-47	133	31	?	?	PUNCT
ddj-47	134	1	or	or	CCONJ
ddj-47	134	2	could	could	AUX
ddj-47	134	3	the	the	DET
ddj-47	134	4	direction	direction	NOUN
ddj-47	134	5	be	be	AUX
ddj-47	134	6	just	just	ADV
ddj-47	134	7	the	the	DET
ddj-47	134	8	opposite	opposite	ADJ
ddj-47	134	9	at	at	ADP
ddj-47	134	10	least	least	ADJ
ddj-47	134	11	in	in	ADP
ddj-47	134	12	the	the	DET
ddj-47	134	13	intentional	intentional	ADJ
ddj-47	134	14	action	action	NOUN
ddj-47	134	15	transforming	transform	VERB
ddj-47	134	16	p	p	ADJ
ddj-47	134	17	-	-	PUNCT
ddj-47	134	18	adic	adic	ADJ
ddj-47	134	19	spacetime	spacetime	NOUN
ddj-47	134	20	sheet	sheet	NOUN
ddj-47	134	21	to	to	ADP
ddj-47	134	22	real	real	ADJ
ddj-47	134	23	space	space	NOUN
ddj-47	134	24	-	-	PUNCT
ddj-47	134	25	time	time	NOUN
ddj-47	134	26	sheet	sheet	NOUN
ddj-47	134	27	?	?	PUNCT
ddj-47	135	1	perhaps	perhaps	ADV
ddj-47	135	2	directions	direction	NOUN
ddj-47	135	3	are	be	AUX
ddj-47	135	4	opposite	opposite	ADJ
ddj-47	135	5	for	for	ADP
ddj-47	135	6	cognition	cognition	NOUN
ddj-47	135	7	and	and	CCONJ
ddj-47	135	8	intention	intention	NOUN
ddj-47	135	9	.	.	PUNCT
ddj-47	136	1	the	the	DET
ddj-47	136	2	generation	generation	NOUN
ddj-47	136	3	of	of	ADP
ddj-47	136	4	(	(	PUNCT
ddj-47	136	5	wormhole	wormhole	NOUN
ddj-47	136	6	)	)	PUNCT
ddj-47	136	7	magnetic	magnetic	ADJ
ddj-47	136	8	flux	flux	NOUN
ddj-47	136	9	tubes	tube	NOUN
ddj-47	136	10	could	could	AUX
ddj-47	136	11	be	be	AUX
ddj-47	136	12	the	the	DET
ddj-47	136	13	correlate	correlate	NOUN
ddj-47	136	14	for	for	ADP
ddj-47	136	15	the	the	DET
ddj-47	136	16	directed	direct	VERB
ddj-47	136	17	attention	attention	NOUN
ddj-47	136	18	,	,	PUNCT
ddj-47	136	19	not	not	PART
ddj-47	136	20	only	only	ADV
ddj-47	136	21	at	at	ADP
ddj-47	136	22	molecular	molecular	ADJ
ddj-47	136	23	level	level	NOUN
ddj-47	136	24	,	,	PUNCT
ddj-47	136	25	but	but	CCONJ
ddj-47	136	26	quite	quite	ADV
ddj-47	136	27	generally	generally	ADV
ddj-47	136	28	.	.	PUNCT
ddj-47	137	1	metaphorically	metaphorically	ADV
ddj-47	137	2	,	,	PUNCT
ddj-47	137	3	the	the	DET
ddj-47	137	4	strands	strand	NOUN
ddj-47	137	5	of	of	ADP
ddj-47	137	6	braid	braid	NOUN
ddj-47	137	7	would	would	AUX
ddj-47	137	8	be	be	AUX
ddj-47	137	9	the	the	DET
ddj-47	137	10	light	light	ADJ
ddj-47	137	11	rays	ray	NOUN
ddj-47	137	12	from	from	ADP
ddj-47	137	13	the	the	DET
ddj-47	137	14	eyes	eye	NOUN
ddj-47	137	15	of	of	ADP
ddj-47	137	16	the	the	DET
ddj-47	137	17	perceiver	perceiver	NOUN
ddj-47	137	18	to	to	ADP
ddj-47	137	19	the	the	DET
ddj-47	137	20	target	target	NOUN
ddj-47	137	21	and	and	CCONJ
ddj-47	137	22	their	their	PRON
ddj-47	137	23	braiding	braiding	NOUN
ddj-47	137	24	would	would	AUX
ddj-47	137	25	code	code	VERB
ddj-47	137	26	the	the	DET
ddj-47	137	27	motions	motion	NOUN
ddj-47	137	28	of	of	ADP
ddj-47	137	29	the	the	DET
ddj-47	137	30	target	target	NOUN
ddj-47	137	31	to	to	ADP
ddj-47	137	32	a	a	DET
ddj-47	137	33	topological	topological	ADJ
ddj-47	137	34	quantum	quantum	ADJ
ddj-47	137	35	computation	computation	NOUN
ddj-47	137	36	like	like	ADP
ddj-47	137	37	activity	activity	NOUN
ddj-47	137	38	and	and	CCONJ
ddj-47	137	39	form	form	VERB
ddj-47	137	40	a	a	DET
ddj-47	137	41	memory	memory	NOUN
ddj-47	137	42	representation	representation	NOUN
ddj-47	137	43	at	at	ADP
ddj-47	137	44	least	least	ADJ
ddj-47	137	45	.	.	PUNCT
ddj-47	138	1	the	the	DET
ddj-47	138	2	additional	additional	ADJ
ddj-47	138	3	aspect	aspect	NOUN
ddj-47	138	4	of	of	ADP
ddj-47	138	5	directed	direct	VERB
ddj-47	138	6	attention	attention	NOUN
ddj-47	138	7	would	would	AUX
ddj-47	138	8	be	be	AUX
ddj-47	138	9	the	the	DET
ddj-47	138	10	coloring	coloring	NOUN
ddj-47	138	11	of	of	ADP
ddj-47	138	12	the	the	DET
ddj-47	138	13	braid	braid	NOUN
ddj-47	138	14	strands	strand	NOUN
ddj-47	138	15	,	,	PUNCT
ddj-47	138	16	kind	kind	ADV
ddj-47	138	17	of	of	ADV
ddj-47	138	18	coloring	color	VERB
ddj-47	138	19	for	for	ADP
ddj-47	138	20	the	the	DET
ddj-47	138	21	virtual	virtual	ADJ
ddj-47	138	22	light	light	NOUN
ddj-47	138	23	rays	ray	NOUN
ddj-47	138	24	emerging	emerge	VERB
ddj-47	138	25	from	from	ADP
ddj-47	138	26	the	the	DET
ddj-47	138	27	eyes	eye	NOUN
ddj-47	138	28	of	of	ADP
ddj-47	138	29	the	the	DET
ddj-47	138	30	molecular	molecular	ADJ
ddj-47	138	31	observer	observer	NOUN
ddj-47	138	32	.	.	PUNCT
ddj-47	139	1	in	in	ADP
ddj-47	139	2	the	the	DET
ddj-47	139	3	case	case	NOUN
ddj-47	139	4	of	of	ADP
ddj-47	139	5	dna	dna	PROPN
ddj-47	139	6	this	this	PRON
ddj-47	139	7	can	can	AUX
ddj-47	139	8	induce	induce	VERB
ddj-47	139	9	a	a	DET
ddj-47	139	10	coloring	coloring	NOUN
ddj-47	139	11	of	of	ADP
ddj-47	139	12	braid	braid	ADJ
ddj-47	139	13	strands	strand	NOUN
ddj-47	139	14	emerging	emerge	VERB
ddj-47	139	15	from	from	ADP
ddj-47	139	16	amino	amino	NOUN
ddj-47	139	17	-	-	PUNCT
ddj-47	139	18	acids	acid	NOUN
ddj-47	139	19	and	and	CCONJ
ddj-47	139	20	other	other	ADJ
ddj-47	139	21	molecules	molecule	NOUN
ddj-47	139	22	so	so	SCONJ
ddj-47	139	23	that	that	SCONJ
ddj-47	139	24	it	it	PRON
ddj-47	139	25	would	would	AUX
ddj-47	139	26	indeed	indeed	ADV
ddj-47	139	27	become	become	VERB
ddj-47	139	28	possible	possible	ADJ
ddj-47	139	29	to	to	PART
ddj-47	139	30	assign	assign	VERB
ddj-47	139	31	to	to	ADP
ddj-47	139	32	free	free	ADJ
ddj-47	139	33	amino	amino	NOUN
ddj-47	139	34	-	-	PUNCT
ddj-47	139	35	acid	acid	NOUN
ddj-47	139	36	the	the	DET
ddj-47	139	37	conjugate	conjugate	NOUN
ddj-47	139	38	of	of	ADP
ddj-47	139	39	the	the	DET
ddj-47	139	40	codon	codon	NOUN
ddj-47	139	41	xy	xy	PROPN
ddj-47	139	42	z	z	NOUN
ddj-47	139	43	coding	code	VERB
ddj-47	139	44	for	for	ADP
ddj-47	139	45	it	it	PRON
ddj-47	139	46	.	.	PUNCT
ddj-47	140	1	attention	attention	NOUN
ddj-47	140	2	can	can	AUX
ddj-47	140	3	be	be	AUX
ddj-47	140	4	also	also	ADV
ddj-47	140	5	redirected	redirect	VERB
ddj-47	140	6	.	.	PUNCT
ddj-47	141	1	for	for	ADP
ddj-47	141	2	this	this	DET
ddj-47	141	3	process	process	NOUN
ddj-47	141	4	there	there	PRON
ddj-47	141	5	is	be	VERB
ddj-47	141	6	a	a	DET
ddj-47	141	7	very	very	ADV
ddj-47	141	8	nice	nice	ADJ
ddj-47	141	9	topological	topological	ADJ
ddj-47	141	10	description	description	NOUN
ddj-47	141	11	as	as	ADP
ddj-47	141	12	a	a	DET
ddj-47	141	13	reconnection	reconnection	NOUN
ddj-47	141	14	of	of	ADP
ddj-47	141	15	flux	flux	PROPN
ddj-47	141	16	tubes	tube	NOUN
ddj-47	141	17	.	.	PUNCT
ddj-47	142	1	what	what	PRON
ddj-47	142	2	happens	happen	VERB
ddj-47	142	3	is	be	AUX
ddj-47	142	4	that	that	SCONJ
ddj-47	142	5	flux	flux	PROPN
ddj-47	142	6	tubes	tube	NOUN
ddj-47	142	7	a→	a→	PROPN
ddj-47	142	8	b	b	NOUN
ddj-47	142	9	and	and	CCONJ
ddj-47	142	10	c	c	PROPN
ddj-47	142	11	→	→	SYM
ddj-47	142	12	d	d	ADJ
ddj-47	142	13	fuse	fuse	NOUN
ddj-47	142	14	for	for	ADP
ddj-47	142	15	a	a	DET
ddj-47	142	16	moment	moment	NOUN
ddj-47	142	17	and	and	CCONJ
ddj-47	142	18	become	become	VERB
ddj-47	142	19	flux	flux	NOUN
ddj-47	142	20	tubes	tube	NOUN
ddj-47	142	21	a	a	DET
ddj-47	142	22	→	→	SYM
ddj-47	142	23	d	d	PROPN
ddj-47	142	24	and	and	CCONJ
ddj-47	142	25	c	c	PROPN
ddj-47	142	26	→	→	SYM
ddj-47	142	27	b.	b.	PROPN
ddj-47	142	28	this	this	DET
ddj-47	142	29	process	process	NOUN
ddj-47	142	30	is	be	AUX
ddj-47	142	31	possible	possible	ADJ
ddj-47	142	32	only	only	ADV
ddj-47	142	33	if	if	SCONJ
ddj-47	142	34	the	the	DET
ddj-47	142	35	strands	strand	NOUN
ddj-47	142	36	have	have	VERB
ddj-47	142	37	the	the	DET
ddj-47	142	38	same	same	ADJ
ddj-47	142	39	color	color	NOUN
ddj-47	142	40	so	so	SCONJ
ddj-47	142	41	that	that	SCONJ
ddj-47	142	42	the	the	DET
ddj-47	142	43	values	value	NOUN
ddj-47	142	44	of	of	ADP
ddj-47	142	45	the	the	DET
ddj-47	142	46	quark	quark	PROPN
ddj-47	142	47	charges	charge	NOUN
ddj-47	142	48	associated	associate	VERB
ddj-47	142	49	with	with	ADP
ddj-47	142	50	a	a	PRON
ddj-47	142	51	and	and	CCONJ
ddj-47	142	52	b	b	NOUN
ddj-47	142	53	are	be	AUX
ddj-47	142	54	the	the	DET
ddj-47	142	55	same	same	ADJ
ddj-47	142	56	.	.	PUNCT
ddj-47	143	1	1	1	X
ddj-47	143	2	.	.	X
ddj-47	143	3	reconnection	reconnection	NOUN
ddj-47	143	4	process	process	NOUN
ddj-47	143	5	can	can	AUX
ddj-47	143	6	modify	modify	VERB
ddj-47	143	7	tqc	tqc	ADJ
ddj-47	143	8	programs	program	NOUN
ddj-47	143	9	.	.	PUNCT
ddj-47	144	1	for	for	ADP
ddj-47	144	2	instance	instance	NOUN
ddj-47	144	3	,	,	PUNCT
ddj-47	144	4	in	in	ADP
ddj-47	144	5	the	the	DET
ddj-47	144	6	case	case	NOUN
ddj-47	144	7	of	of	ADP
ddj-47	144	8	the	the	DET
ddj-47	144	9	flux	flux	NOUN
ddj-47	144	10	tubes	tube	NOUN
ddj-47	144	11	coming	come	VERB
ddj-47	144	12	from	from	ADP
ddj-47	144	13	nucleotides	nucleotide	NOUN
ddj-47	144	14	x	x	PUNCT
ddj-47	144	15	and	and	CCONJ
ddj-47	144	16	xc	xc	PROPN
ddj-47	144	17	and	and	CCONJ
ddj-47	144	18	ending	end	VERB
ddj-47	144	19	to	to	ADP
ddj-47	144	20	the	the	DET
ddj-47	144	21	lipid	lipid	NOUN
ddj-47	144	22	layer	layer	NOUN
ddj-47	144	23	this	this	DET
ddj-47	144	24	process	process	NOUN
ddj-47	144	25	means	mean	VERB
ddj-47	144	26	that	that	SCONJ
ddj-47	144	27	x	x	PROPN
ddj-47	144	28	and	and	CCONJ
ddj-47	144	29	xc	xc	PROPN
ddj-47	144	30	and	and	CCONJ
ddj-47	144	31	corresponding	correspond	VERB
ddj-47	144	32	lipids	lipid	NOUN
ddj-47	144	33	become	become	AUX
ddj-47	144	34	connected	connected	ADJ
ddj-47	144	35	and	and	CCONJ
ddj-47	144	36	genome	genome	NOUN
ddj-47	144	37	builds	build	VERB
ddj-47	144	38	memory	memory	NOUN
ddj-47	144	39	representation	representation	NOUN
ddj-47	144	40	about	about	ADP
ddj-47	144	41	this	this	DET
ddj-47	144	42	process	process	NOUN
ddj-47	144	43	via	via	ADP
ddj-47	144	44	similar	similar	ADJ
ddj-47	144	45	link	link	NOUN
ddj-47	144	46	.	.	PUNCT
ddj-47	145	1	2	2	X
ddj-47	145	2	.	.	X
ddj-47	145	3	reconnection	reconnection	NOUN
ddj-47	145	4	process	process	NOUN
ddj-47	145	5	makes	make	VERB
ddj-47	145	6	also	also	ADV
ddj-47	145	7	possible	possible	ADJ
ddj-47	145	8	what	what	PRON
ddj-47	145	9	might	might	AUX
ddj-47	145	10	be	be	AUX
ddj-47	145	11	called	call	VERB
ddj-47	145	12	color	color	NOUN
ddj-47	145	13	inheritance	inheritance	NOUN
ddj-47	145	14	allowing	allow	VERB
ddj-47	145	15	aminoacids	aminoacid	NOUN
ddj-47	145	16	to	to	PART
ddj-47	145	17	inherit	inherit	VERB
ddj-47	145	18	the	the	DET
ddj-47	145	19	conjugate	conjugate	ADJ
ddj-47	145	20	colors	color	NOUN
ddj-47	145	21	of	of	ADP
ddj-47	145	22	the	the	DET
ddj-47	145	23	nucleotides	nucleotide	NOUN
ddj-47	145	24	of	of	ADP
ddj-47	145	25	the	the	DET
ddj-47	145	26	codon	codon	NOUN
ddj-47	145	27	coding	code	VERB
ddj-47	145	28	it	it	PRON
ddj-47	145	29	.	.	PUNCT
ddj-47	146	1	issn	issn	PROPN
ddj-47	146	2	:	:	PUNCT
ddj-47	146	3	2159	2159	NUM
ddj-47	146	4	-	-	SYM
ddj-47	146	5	0465	0465	NUM
ddj-47	146	6	dna	dna	PROPN
ddj-47	146	7	decipher	decipher	PROPN
ddj-47	146	8	journal	journal	PROPN
ddj-47	146	9	june	june	PROPN
ddj-47	146	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	146	11	published	publish	VERB
ddj-47	146	12	by	by	ADP
ddj-47	146	13	quantumdream	quantumdream	PROPN
ddj-47	146	14	,	,	PUNCT
ddj-47	146	15	inc	inc	PROPN
ddj-47	146	16	.	.	PROPN
ddj-47	146	17	dna	dna	PROPN
ddj-47	146	18	decipher	decipher	PROPN
ddj-47	146	19	journal	journal	NOUN
ddj-47	147	1	|	|	ADV
ddj-47	147	2	may	may	AUX
ddj-47	147	3	2013	2013	NUM
ddj-47	147	4	|	|	ADV
ddj-47	147	5	volume	volume	NOUN
ddj-47	147	6	3	3	NUM
ddj-47	147	7	|	|	NOUN
ddj-47	147	8	issue	issue	VERB
ddj-47	147	9	1	1	NUM
ddj-47	147	10	|	|	ADV
ddj-47	147	11	pp	pp	ADJ
ddj-47	147	12	.	.	PUNCT
ddj-47	148	1	58	58	NUM
ddj-47	148	2	-	-	SYM
ddj-47	148	3	88	88	NUM
ddj-47	148	4	63	63	NUM
ddj-47	148	5	pitkänen	pitkänen	NOUN
ddj-47	148	6	,	,	PUNCT
ddj-47	148	7	m.	m.	NOUN
ddj-47	148	8	,	,	PUNCT
ddj-47	148	9	a	a	DET
ddj-47	148	10	model	model	NOUN
ddj-47	148	11	for	for	ADP
ddj-47	148	12	protein	protein	NOUN
ddj-47	148	13	folding	folding	NOUN
ddj-47	148	14	and	and	CCONJ
ddj-47	148	15	biocatalysis	biocatalysis	NOUN
ddj-47	148	16	3	3	NUM
ddj-47	148	17	.	.	X
ddj-47	148	18	dna	dna	PROPN
ddj-47	148	19	would	would	AUX
ddj-47	148	20	have	have	VERB
ddj-47	148	21	memory	memory	NOUN
ddj-47	148	22	representation	representation	NOUN
ddj-47	148	23	about	about	ADP
ddj-47	148	24	molecular	molecular	ADJ
ddj-47	148	25	processes	process	NOUN
ddj-47	148	26	via	via	ADP
ddj-47	148	27	these	these	DET
ddj-47	148	28	changing	change	VERB
ddj-47	148	29	braiding	braid	VERB
ddj-47	148	30	topologies	topology	NOUN
ddj-47	148	31	,	,	PUNCT
ddj-47	148	32	and	and	CCONJ
ddj-47	148	33	one	one	PRON
ddj-47	148	34	could	could	AUX
ddj-47	148	35	say	say	VERB
ddj-47	148	36	that	that	SCONJ
ddj-47	148	37	these	these	DET
ddj-47	148	38	molecular	molecular	ADJ
ddj-47	148	39	processes	process	NOUN
ddj-47	148	40	reflect	reflect	VERB
ddj-47	148	41	the	the	DET
ddj-47	148	42	bodily	bodily	ADJ
ddj-47	148	43	motions	motion	NOUN
ddj-47	148	44	of	of	ADP
ddj-47	148	45	the	the	DET
ddj-47	148	46	magnetic	magnetic	ADJ
ddj-47	148	47	body	body	NOUN
ddj-47	148	48	.	.	PUNCT
ddj-47	149	1	entire	entire	ADJ
ddj-47	149	2	molecular	molecular	ADJ
ddj-47	149	3	dynamics	dynamic	NOUN
ddj-47	149	4	of	of	ADP
ddj-47	149	5	the	the	DET
ddj-47	149	6	organism	organism	NOUN
ddj-47	149	7	could	could	AUX
ddj-47	149	8	represent	represent	VERB
ddj-47	149	9	an	an	DET
ddj-47	149	10	enormous	enormous	ADJ
ddj-47	149	11	tqc	tqc	NOUN
ddj-47	149	12	induced	induce	VERB
ddj-47	149	13	by	by	ADP
ddj-47	149	14	the	the	DET
ddj-47	149	15	motor	motor	NOUN
ddj-47	149	16	activities	activity	NOUN
ddj-47	149	17	of	of	ADP
ddj-47	149	18	the	the	DET
ddj-47	149	19	magnetic	magnetic	ADJ
ddj-47	149	20	body	body	NOUN
ddj-47	149	21	.	.	PUNCT
ddj-47	150	1	at	at	ADP
ddj-47	150	2	the	the	DET
ddj-47	150	3	level	level	NOUN
ddj-47	150	4	of	of	ADP
ddj-47	150	5	sensory	sensory	ADJ
ddj-47	150	6	experience	experience	NOUN
ddj-47	150	7	similar	similar	ADJ
ddj-47	150	8	idea	idea	NOUN
ddj-47	150	9	has	have	AUX
ddj-47	150	10	been	be	AUX
ddj-47	150	11	discussed	discuss	VERB
ddj-47	150	12	earlier	early	ADV
ddj-47	150	13	[	[	X
ddj-47	150	14	20	20	NUM
ddj-47	150	15	]	]	PUNCT
ddj-47	150	16	:	:	PUNCT
ddj-47	150	17	out	out	ADP
ddj-47	150	18	of	of	ADP
ddj-47	150	19	body	body	NOUN
ddj-47	150	20	experiences	experience	NOUN
ddj-47	150	21	(	(	PUNCT
ddj-47	150	22	obes	obes	PROPN
ddj-47	150	23	)	)	PUNCT
ddj-47	150	24	and	and	CCONJ
ddj-47	150	25	illusions	illusion	NOUN
ddj-47	150	26	such	such	ADJ
ddj-47	150	27	as	as	ADP
ddj-47	150	28	train	train	NOUN
ddj-47	150	29	illusion	illusion	NOUN
ddj-47	150	30	could	could	AUX
ddj-47	150	31	be	be	AUX
ddj-47	150	32	understood	understand	VERB
ddj-47	150	33	in	in	ADP
ddj-47	150	34	terms	term	NOUN
ddj-47	150	35	of	of	ADP
ddj-47	150	36	motor	motor	NOUN
ddj-47	150	37	action	action	NOUN
ddj-47	150	38	of	of	ADP
ddj-47	150	39	magnetic	magnetic	ADJ
ddj-47	150	40	body	body	NOUN
ddj-47	150	41	inducing	induce	VERB
ddj-47	150	42	virtual	virtual	ADJ
ddj-47	150	43	sensory	sensory	ADJ
ddj-47	150	44	percepts	percept	NOUN
ddj-47	150	45	.	.	PUNCT
ddj-47	151	1	attention	attention	NOUN
ddj-47	151	2	can	can	AUX
ddj-47	151	3	be	be	AUX
ddj-47	151	4	also	also	ADV
ddj-47	151	5	switched	switch	VERB
ddj-47	151	6	on	on	ADP
ddj-47	151	7	and	and	CCONJ
ddj-47	151	8	off	off	ADV
ddj-47	151	9	.	.	PUNCT
ddj-47	152	1	here	here	ADV
ddj-47	152	2	the	the	DET
ddj-47	152	3	structure	structure	NOUN
ddj-47	152	4	of	of	ADP
ddj-47	152	5	the	the	DET
ddj-47	152	6	lipid	lipid	NOUN
ddj-47	152	7	ends	end	VERB
ddj-47	152	8	containing	contain	VERB
ddj-47	152	9	two	two	NUM
ddj-47	152	10	nearby	nearby	ADV
ddj-47	152	11	situated	situated	ADJ
ddj-47	152	12	=	=	PUNCT
ddj-47	153	1	o	o	NOUN
ddj-47	153	2	:	:	PUNCT
ddj-47	153	3	s	s	AUX
ddj-47	153	4	suggest	suggest	VERB
ddj-47	153	5	the	the	DET
ddj-47	153	6	mechanism	mechanism	NOUN
ddj-47	153	7	:	:	PUNCT
ddj-47	153	8	the	the	DET
ddj-47	153	9	short	short	ADJ
ddj-47	153	10	flux	flux	NOUN
ddj-47	153	11	tube	tube	NOUN
ddj-47	153	12	connecting	connect	VERB
ddj-47	153	13	=	=	PUNCT
ddj-47	153	14	o	o	NOUN
ddj-47	153	15	:	:	PUNCT
ddj-47	153	16	s	s	X
ddj-47	153	17	disappears	disappear	VERB
ddj-47	153	18	by	by	ADP
ddj-47	153	19	reconnection	reconnection	NOUN
ddj-47	153	20	mechanism	mechanism	NOUN
ddj-47	153	21	with	with	ADP
ddj-47	153	22	a	a	DET
ddj-47	153	23	pair	pair	NOUN
ddj-47	153	24	of	of	ADP
ddj-47	153	25	hydrogen	hydrogen	NOUN
ddj-47	153	26	bonded	bond	VERB
ddj-47	153	27	water	water	NOUN
ddj-47	153	28	molecules	molecule	NOUN
ddj-47	153	29	leading	lead	VERB
ddj-47	153	30	to	to	ADP
ddj-47	153	31	a	a	DET
ddj-47	153	32	shortcut	shortcut	NOUN
ddj-47	153	33	of	of	ADP
ddj-47	153	34	the	the	DET
ddj-47	153	35	connecting	connect	VERB
ddj-47	153	36	flux	flux	NOUN
ddj-47	153	37	tubes	tube	NOUN
ddj-47	153	38	to	to	ADP
ddj-47	153	39	=	=	PUNCT
ddj-47	153	40	o	o	X
ddj-47	154	1	−	−	X
ddj-47	154	2	−h2o	−h2o	PROPN
ddj-47	154	3	hydrogen	hydrogen	NOUN
ddj-47	154	4	bonds	bond	NOUN
ddj-47	154	5	.	.	PUNCT
ddj-47	155	1	the	the	DET
ddj-47	155	2	minimization	minimization	NOUN
ddj-47	155	3	of	of	ADP
ddj-47	155	4	coulomb	coulomb	NOUN
ddj-47	155	5	interaction	interaction	NOUN
ddj-47	155	6	energy	energy	NOUN
ddj-47	155	7	at	at	ADP
ddj-47	155	8	each	each	DET
ddj-47	155	9	end	end	NOUN
ddj-47	155	10	implies	imply	VERB
ddj-47	155	11	that	that	SCONJ
ddj-47	155	12	re	re	NOUN
ddj-47	155	13	-	-	NOUN
ddj-47	155	14	appearance	appearance	NOUN
ddj-47	155	15	of	of	ADP
ddj-47	155	16	the	the	DET
ddj-47	155	17	flux	flux	NOUN
ddj-47	155	18	tubes	tube	NOUN
ddj-47	155	19	creates	create	VERB
ddj-47	155	20	a	a	DET
ddj-47	155	21	short	short	ADJ
ddj-47	155	22	flux	flux	NOUN
ddj-47	155	23	tube	tube	NOUN
ddj-47	155	24	with	with	ADP
ddj-47	155	25	the	the	DET
ddj-47	155	26	original	original	ADJ
ddj-47	155	27	strand	strand	NOUN
ddj-47	155	28	color	color	NOUN
ddj-47	155	29	.	.	PUNCT
ddj-47	156	1	2.2	2.2	NUM
ddj-47	156	2	does	do	AUX
ddj-47	156	3	directed	direct	VERB
ddj-47	156	4	attention	attention	NOUN
ddj-47	156	5	generate	generate	NOUN
ddj-47	156	6	memory	memory	NOUN
ddj-47	156	7	representations	representation	NOUN
ddj-47	156	8	and	and	CCONJ
ddj-47	156	9	tqc	tqc	VERB
ddj-47	156	10	like	like	ADP
ddj-47	156	11	processes	process	NOUN
ddj-47	156	12	directed	direct	VERB
ddj-47	156	13	attention	attention	NOUN
ddj-47	156	14	induces	induce	NOUN
ddj-47	156	15	braiding	braid	VERB
ddj-47	156	16	if	if	SCONJ
ddj-47	156	17	the	the	DET
ddj-47	156	18	target	target	NOUN
ddj-47	156	19	is	be	AUX
ddj-47	156	20	moving	move	VERB
ddj-47	156	21	and	and	CCONJ
ddj-47	156	22	changing	change	VERB
ddj-47	156	23	its	its	PRON
ddj-47	156	24	shape	shape	NOUN
ddj-47	156	25	.	.	PUNCT
ddj-47	157	1	this	this	PRON
ddj-47	157	2	gives	give	VERB
ddj-47	157	3	rise	rise	NOUN
ddj-47	157	4	to	to	ADP
ddj-47	157	5	a	a	DET
ddj-47	157	6	memory	memory	NOUN
ddj-47	157	7	representation	representation	NOUN
ddj-47	157	8	of	of	ADP
ddj-47	157	9	the	the	DET
ddj-47	157	10	behavior	behavior	NOUN
ddj-47	157	11	of	of	ADP
ddj-47	157	12	the	the	DET
ddj-47	157	13	object	object	NOUN
ddj-47	157	14	of	of	ADP
ddj-47	157	15	attention	attention	NOUN
ddj-47	157	16	and	and	CCONJ
ddj-47	157	17	also	also	ADV
ddj-47	157	18	to	to	ADP
ddj-47	157	19	a	a	DET
ddj-47	157	20	tqc	tqc	ADJ
ddj-47	157	21	like	like	ADP
ddj-47	157	22	process	process	NOUN
ddj-47	157	23	.	.	PUNCT
ddj-47	158	1	a	a	DET
ddj-47	158	2	considerable	considerable	ADJ
ddj-47	158	3	generalization	generalization	NOUN
ddj-47	158	4	of	of	ADP
ddj-47	158	5	tqc	tqc	ADJ
ddj-47	158	6	paradigm	paradigm	NOUN
ddj-47	158	7	suggests	suggest	VERB
ddj-47	158	8	itself	itself	PRON
ddj-47	158	9	.	.	PUNCT
ddj-47	159	1	tqc	tqc	PROPN
ddj-47	159	2	could	could	AUX
ddj-47	159	3	be	be	AUX
ddj-47	159	4	induced	induce	VERB
ddj-47	159	5	by	by	ADP
ddj-47	159	6	the	the	DET
ddj-47	159	7	braiding	braiding	NOUN
ddj-47	159	8	between	between	ADP
ddj-47	159	9	dna	dna	PROPN
ddj-47	159	10	and	and	CCONJ
ddj-47	159	11	lipids	lipid	NOUN
ddj-47	159	12	,	,	PUNCT
ddj-47	159	13	dna	dna	NOUN
ddj-47	159	14	and	and	CCONJ
ddj-47	159	15	proteins	protein	NOUN
ddj-47	159	16	via	via	ADP
ddj-47	159	17	folding	fold	VERB
ddj-47	159	18	processes	process	NOUN
ddj-47	159	19	,	,	PUNCT
ddj-47	159	20	dna	dna	PROPN
ddj-47	159	21	rna	rna	NOUN
ddj-47	159	22	braiding	braiding	NOUN
ddj-47	159	23	and	and	CCONJ
ddj-47	159	24	braiding	braid	VERB
ddj-47	159	25	between	between	ADP
ddj-47	159	26	dna	dna	NOUN
ddj-47	159	27	and	and	CCONJ
ddj-47	159	28	its	its	PRON
ddj-47	159	29	conjugate	conjugate	NOUN
ddj-47	159	30	,	,	PUNCT
ddj-47	159	31	dna	dna	NOUN
ddj-47	159	32	and	and	CCONJ
ddj-47	159	33	protein	protein	NOUN
ddj-47	159	34	braiding	braiding	NOUN
ddj-47	159	35	.	.	PUNCT
ddj-47	160	1	the	the	DET
ddj-47	160	2	outcome	outcome	NOUN
ddj-47	160	3	of	of	ADP
ddj-47	160	4	tqc	tqc	PROPN
ddj-47	160	5	would	would	AUX
ddj-47	160	6	be	be	AUX
ddj-47	160	7	represented	represent	VERB
ddj-47	160	8	as	as	ADP
ddj-47	160	9	the	the	DET
ddj-47	160	10	temporal	temporal	ADJ
ddj-47	160	11	patterns	pattern	NOUN
ddj-47	160	12	of	of	ADP
ddj-47	160	13	biochemical	biochemical	ADJ
ddj-47	160	14	concentrations	concentration	NOUN
ddj-47	160	15	and	and	CCONJ
ddj-47	160	16	rates	rate	NOUN
ddj-47	160	17	and	and	CCONJ
ddj-47	160	18	there	there	PRON
ddj-47	160	19	would	would	AUX
ddj-47	160	20	be	be	AUX
ddj-47	160	21	hierarchy	hierarchy	NOUN
ddj-47	160	22	of	of	ADP
ddj-47	160	23	p	p	NOUN
ddj-47	160	24	-	-	PUNCT
ddj-47	160	25	adic	adic	ADJ
ddj-47	160	26	time	time	NOUN
ddj-47	160	27	scales	scale	NOUN
ddj-47	160	28	and	and	CCONJ
ddj-47	160	29	those	those	PRON
ddj-47	160	30	associated	associate	VERB
ddj-47	160	31	with	with	ADP
ddj-47	160	32	the	the	DET
ddj-47	160	33	dark	dark	ADJ
ddj-47	160	34	matter	matter	NOUN
ddj-47	160	35	hierarchy	hierarchy	NOUN
ddj-47	160	36	.	.	PUNCT
ddj-47	161	1	for	for	ADP
ddj-47	161	2	instance	instance	NOUN
ddj-47	161	3	,	,	PUNCT
ddj-47	161	4	the	the	DET
ddj-47	161	5	protein	protein	NOUN
ddj-47	161	6	content	content	NOUN
ddj-47	161	7	of	of	ADP
ddj-47	161	8	lipid	lipid	ADJ
ddj-47	161	9	membranes	membrane	NOUN
ddj-47	161	10	is	be	AUX
ddj-47	161	11	about	about	ADV
ddj-47	161	12	50	50	NUM
ddj-47	161	13	per	per	ADP
ddj-47	161	14	cent	cent	NOUN
ddj-47	161	15	and	and	CCONJ
ddj-47	161	16	varies	vary	VERB
ddj-47	161	17	between	between	ADP
ddj-47	161	18	25	25	NUM
ddj-47	161	19	-	-	SYM
ddj-47	161	20	75	75	NUM
ddj-47	161	21	per	per	ADP
ddj-47	161	22	cent	cent	NOUN
ddj-47	161	23	so	so	SCONJ
ddj-47	161	24	that	that	SCONJ
ddj-47	161	25	protein	protein	NOUN
ddj-47	161	26	folding	folding	NOUN
ddj-47	161	27	and	and	CCONJ
ddj-47	161	28	lipid	lipid	NOUN
ddj-47	161	29	flow	flow	NOUN
ddj-47	161	30	could	could	AUX
ddj-47	161	31	define	define	VERB
ddj-47	161	32	tqc	tqc	ADJ
ddj-47	161	33	programs	program	NOUN
ddj-47	161	34	as	as	ADP
ddj-47	161	35	self	self	NOUN
ddj-47	161	36	-	-	PUNCT
ddj-47	161	37	organization	organization	NOUN
ddj-47	161	38	patterns	pattern	NOUN
ddj-47	161	39	.	.	PUNCT
ddj-47	162	1	the	the	DET
ddj-47	162	2	folding	folding	NOUN
ddj-47	162	3	of	of	ADP
ddj-47	162	4	protein	protein	NOUN
ddj-47	162	5	is	be	AUX
ddj-47	162	6	dynamical	dynamical	ADJ
ddj-47	162	7	process	process	NOUN
ddj-47	162	8	:	:	PUNCT
ddj-47	162	9	alpha	alpha	NOUN
ddj-47	162	10	helices	helix	NOUN
ddj-47	162	11	are	be	AUX
ddj-47	162	12	created	create	VERB
ddj-47	162	13	and	and	CCONJ
ddj-47	162	14	disappear	disappear	VERB
ddj-47	162	15	in	in	ADP
ddj-47	162	16	time	time	NOUN
ddj-47	162	17	scale	scale	NOUN
ddj-47	162	18	of	of	ADP
ddj-47	162	19	10−7	10−7	NUM
ddj-47	162	20	seconds	second	NOUN
ddj-47	162	21	and	and	CCONJ
ddj-47	162	22	the	the	DET
ddj-47	162	23	side	side	NOUN
ddj-47	162	24	chains	chain	NOUN
ddj-47	162	25	of	of	ADP
ddj-47	162	26	protein	protein	NOUN
ddj-47	162	27	can	can	AUX
ddj-47	162	28	rotate	rotate	VERB
ddj-47	162	29	.	.	PUNCT
ddj-47	163	1	the	the	DET
ddj-47	163	2	details	detail	NOUN
ddj-47	163	3	of	of	ADP
ddj-47	163	4	the	the	DET
ddj-47	163	5	tqc	tqc	NOUN
ddj-47	163	6	like	like	INTJ
ddj-47	163	7	process	process	NOUN
ddj-47	163	8	depend	depend	VERB
ddj-47	163	9	on	on	ADP
ddj-47	163	10	what	what	PRON
ddj-47	163	11	one	one	NOUN
ddj-47	163	12	assumes	assume	VERB
ddj-47	163	13	.	.	PUNCT
ddj-47	164	1	the	the	DET
ddj-47	164	2	minimal	minimal	ADJ
ddj-47	164	3	scenario	scenario	NOUN
ddj-47	164	4	is	be	AUX
ddj-47	164	5	deduced	deduce	VERB
ddj-47	164	6	from	from	ADP
ddj-47	164	7	the	the	DET
ddj-47	164	8	transcription	transcription	NOUN
ddj-47	164	9	and	and	CCONJ
ddj-47	164	10	translation	translation	NOUN
ddj-47	164	11	processes	process	NOUN
ddj-47	164	12	and	and	CCONJ
ddj-47	164	13	from	from	ADP
ddj-47	164	14	the	the	DET
ddj-47	164	15	condition	condition	NOUN
ddj-47	164	16	that	that	SCONJ
ddj-47	164	17	magnetic	magnetic	ADJ
ddj-47	164	18	body	body	NOUN
ddj-47	164	19	keeps	keep	VERB
ddj-47	164	20	control	control	NOUN
ddj-47	164	21	or	or	CCONJ
ddj-47	164	22	at	at	ADP
ddj-47	164	23	least	least	ADJ
ddj-47	164	24	keeps	keep	VERB
ddj-47	164	25	book	book	NOUN
ddj-47	164	26	about	about	ADP
ddj-47	164	27	what	what	PRON
ddj-47	164	28	happens	happen	VERB
ddj-47	164	29	using	use	VERB
ddj-47	164	30	genome	genome	NOUN
ddj-47	164	31	as	as	ADP
ddj-47	164	32	a	a	DET
ddj-47	164	33	tool	tool	NOUN
ddj-47	164	34	.	.	PUNCT
ddj-47	165	1	the	the	DET
ddj-47	165	2	picture	picture	NOUN
ddj-47	165	3	would	would	AUX
ddj-47	165	4	be	be	AUX
ddj-47	165	5	essentially	essentially	ADV
ddj-47	165	6	what	what	PRON
ddj-47	165	7	one	one	PRON
ddj-47	165	8	might	might	AUX
ddj-47	165	9	obtain	obtain	VERB
ddj-47	165	10	by	by	ADP
ddj-47	165	11	applying	apply	VERB
ddj-47	165	12	a	a	DET
ddj-47	165	13	rough	rough	ADJ
ddj-47	165	14	model	model	NOUN
ddj-47	165	15	for	for	ADP
ddj-47	165	16	web	web	NOUN
ddj-47	165	17	in	in	ADP
ddj-47	165	18	terms	term	NOUN
ddj-47	165	19	of	of	ADP
ddj-47	165	20	nodes	node	NOUN
ddj-47	165	21	and	and	CCONJ
ddj-47	165	22	links	link	NOUN
ddj-47	165	23	.	.	PUNCT
ddj-47	166	1	the	the	DET
ddj-47	166	2	reader	reader	NOUN
ddj-47	166	3	is	be	AUX
ddj-47	166	4	encouraged	encourage	VERB
ddj-47	166	5	to	to	PART
ddj-47	166	6	use	use	VERB
ddj-47	166	7	paper	paper	NOUN
ddj-47	166	8	and	and	CCONJ
ddj-47	166	9	pencil	pencil	NOUN
ddj-47	166	10	to	to	PART
ddj-47	166	11	make	make	VERB
ddj-47	166	12	the	the	DET
ddj-47	166	13	following	follow	VERB
ddj-47	166	14	description	description	NOUN
ddj-47	166	15	more	more	ADV
ddj-47	166	16	illustrative	illustrative	ADJ
ddj-47	166	17	.	.	PUNCT
ddj-47	167	1	1	1	X
ddj-47	167	2	.	.	X
ddj-47	167	3	assume	assume	VERB
ddj-47	167	4	that	that	SCONJ
ddj-47	167	5	mrna	mrna	PROPN
ddj-47	167	6	and	and	CCONJ
ddj-47	167	7	dna	dna	PROPN
ddj-47	167	8	remain	remain	VERB
ddj-47	167	9	connected	connect	VERB
ddj-47	167	10	by	by	ADP
ddj-47	167	11	flux	flux	NOUN
ddj-47	167	12	tubes	tube	NOUN
ddj-47	167	13	after	after	ADP
ddj-47	167	14	transcription	transcription	NOUN
ddj-47	167	15	and	and	CCONJ
ddj-47	167	16	that	that	SCONJ
ddj-47	167	17	only	only	ADJ
ddj-47	167	18	reconnection	reconnection	NOUN
ddj-47	167	19	process	process	NOUN
ddj-47	167	20	can	can	AUX
ddj-47	167	21	cut	cut	VERB
ddj-47	167	22	this	this	DET
ddj-47	167	23	connection	connection	NOUN
ddj-47	167	24	so	so	SCONJ
ddj-47	167	25	that	that	SCONJ
ddj-47	167	26	mrna	mrna	PROPN
ddj-47	167	27	inherits	inherit	VERB
ddj-47	167	28	the	the	DET
ddj-47	167	29	conjugate	conjugate	ADJ
ddj-47	167	30	colors	color	NOUN
ddj-47	167	31	of	of	ADP
ddj-47	167	32	dna	dna	PROPN
ddj-47	167	33	.	.	PUNCT
ddj-47	168	1	assume	assume	VERB
ddj-47	168	2	same	same	ADJ
ddj-47	168	3	for	for	ADP
ddj-47	168	4	mrna	mrna	PROPN
ddj-47	168	5	and	and	CCONJ
ddj-47	168	6	trna	trna	PROPN
ddj-47	168	7	.	.	PUNCT
ddj-47	169	1	assume	assume	VERB
ddj-47	169	2	that	that	SCONJ
ddj-47	169	3	amino	amino	NOUN
ddj-47	169	4	-	-	PUNCT
ddj-47	169	5	acid	acid	NOUN
ddj-47	169	6	associated	associate	VERB
ddj-47	169	7	with	with	ADP
ddj-47	169	8	trna	trna	PROPN
ddj-47	169	9	has	have	VERB
ddj-47	169	10	similar	similar	ADJ
ddj-47	169	11	flux	flux	NOUN
ddj-47	169	12	tube	tube	NOUN
ddj-47	169	13	connections	connection	NOUN
ddj-47	169	14	with	with	ADP
ddj-47	169	15	the	the	DET
ddj-47	169	16	nucleotides	nucleotide	NOUN
ddj-47	169	17	of	of	ADP
ddj-47	169	18	trna	trna	NOUN
ddj-47	169	19	.	.	PUNCT
ddj-47	170	1	under	under	ADP
ddj-47	170	2	these	these	DET
ddj-47	170	3	assumptions	assumption	NOUN
ddj-47	170	4	amino	amino	NOUN
ddj-47	170	5	-	-	PUNCT
ddj-47	170	6	acid	acid	NOUN
ddj-47	170	7	inherits	inherit	VERB
ddj-47	170	8	the	the	DET
ddj-47	170	9	conjugate	conjugate	ADJ
ddj-47	170	10	colors	color	NOUN
ddj-47	170	11	of	of	ADP
ddj-47	170	12	dna	dna	PROPN
ddj-47	170	13	nucleotides	nucleotide	NOUN
ddj-47	170	14	via	via	ADP
ddj-47	170	15	the	the	DET
ddj-47	170	16	connection	connection	NOUN
ddj-47	170	17	line	line	NOUN
ddj-47	170	18	dna	dna	PROPN
ddj-47	170	19	-	-	PUNCT
ddj-47	170	20	mrna	mrna	PROPN
ddj-47	170	21	-	-	PUNCT
ddj-47	170	22	trna	trna	ADJ
ddj-47	170	23	-	-	PUNCT
ddj-47	170	24	amino	amino	NOUN
ddj-47	170	25	-	-	PUNCT
ddj-47	170	26	acid	acid	NOUN
ddj-47	170	27	faithfully	faithfully	ADV
ddj-47	170	28	if	if	SCONJ
ddj-47	170	29	all	all	DET
ddj-47	170	30	links	link	NOUN
ddj-47	170	31	are	be	AUX
ddj-47	170	32	correspond	correspond	ADJ
ddj-47	170	33	to	to	PART
ddj-47	170	34	quark	quark	VERB
ddj-47	170	35	pairs	pair	NOUN
ddj-47	170	36	rather	rather	ADV
ddj-47	170	37	than	than	ADP
ddj-47	170	38	their	their	PRON
ddj-47	170	39	superpositions	superposition	NOUN
ddj-47	170	40	.	.	PUNCT
ddj-47	171	1	wobble	wobble	ADJ
ddj-47	171	2	pairing	pair	VERB
ddj-47	171	3	for	for	ADP
ddj-47	171	4	z	z	NOUN
ddj-47	171	5	nucleotide	nucleotide	NOUN
ddj-47	171	6	could	could	AUX
ddj-47	171	7	actually	actually	ADV
ddj-47	171	8	correspond	correspond	VERB
ddj-47	171	9	to	to	ADP
ddj-47	171	10	this	this	DET
ddj-47	171	11	kind	kind	NOUN
ddj-47	171	12	of	of	ADP
ddj-47	171	13	superposition	superposition	NOUN
ddj-47	171	14	.	.	PUNCT
ddj-47	172	1	2	2	X
ddj-47	172	2	.	.	X
ddj-47	172	3	one	one	PRON
ddj-47	172	4	can	can	AUX
ddj-47	172	5	consider	consider	VERB
ddj-47	172	6	several	several	ADJ
ddj-47	172	7	options	option	NOUN
ddj-47	172	8	for	for	ADP
ddj-47	172	9	the	the	DET
ddj-47	172	10	amino	amino	NOUN
ddj-47	172	11	-	-	PUNCT
ddj-47	172	12	acid	acid	NOUN
ddj-47	172	13	-	-	PUNCT
ddj-47	172	14	acid	acid	NOUN
ddj-47	172	15	dna	dna	NOUN
ddj-47	172	16	correspondence	correspondence	NOUN
ddj-47	172	17	but	but	CCONJ
ddj-47	172	18	trial	trial	NOUN
ddj-47	172	19	-	-	PUNCT
ddj-47	172	20	and	and	CCONJ
ddj-47	172	21	-	-	PUNCT
ddj-47	172	22	error	error	NOUN
ddj-47	172	23	work	work	NOUN
ddj-47	172	24	showed	show	VERB
ddj-47	172	25	that	that	SCONJ
ddj-47	172	26	a	a	DET
ddj-47	172	27	realistic	realistic	ADJ
ddj-47	172	28	folding	fold	VERB
ddj-47	172	29	code	code	NOUN
ddj-47	172	30	is	be	AUX
ddj-47	172	31	obtained	obtain	VERB
ddj-47	172	32	only	only	ADV
ddj-47	172	33	if	if	SCONJ
ddj-47	172	34	x	x	X
ddj-47	172	35	,	,	PUNCT
ddj-47	172	36	y	y	PROPN
ddj-47	172	37	,	,	PUNCT
ddj-47	172	38	and	and	CCONJ
ddj-47	172	39	z	z	NOUN
ddj-47	172	40	correspond	correspond	VERB
ddj-47	172	41	to	to	ADP
ddj-47	172	42	o	o	PROPN
ddj-47	172	43	−	−	PROPN
ddj-47	172	44	h	h	NOUN
ddj-47	172	45	,	,	PUNCT
ddj-47	172	46	o	o	PROPN
ddj-47	172	47	=	=	X
ddj-47	172	48	,	,	PUNCT
ddj-47	172	49	and	and	CCONJ
ddj-47	172	50	nh2	nh2	NOUN
ddj-47	172	51	in	in	ADP
ddj-47	172	52	the	the	DET
ddj-47	172	53	constant	constant	ADJ
ddj-47	172	54	part	part	NOUN
ddj-47	172	55	of	of	ADP
ddj-47	172	56	free	free	ADJ
ddj-47	172	57	amino	amino	NOUN
ddj-47	172	58	-	-	PUNCT
ddj-47	172	59	acid	acid	NOUN
ddj-47	172	60	.	.	PUNCT
ddj-47	173	1	during	during	ADP
ddj-47	173	2	translation	translation	NOUN
ddj-47	173	3	the	the	DET
ddj-47	173	4	formation	formation	NOUN
ddj-47	173	5	of	of	ADP
ddj-47	173	6	the	the	DET
ddj-47	173	7	peptide	peptide	NOUN
ddj-47	173	8	bond	bond	NOUN
ddj-47	173	9	between	between	ADP
ddj-47	173	10	amino	amino	NOUN
ddj-47	173	11	-	-	PUNCT
ddj-47	173	12	acids	acid	NOUN
ddj-47	173	13	dehydration	dehydration	NOUN
ddj-47	173	14	leads	lead	VERB
ddj-47	173	15	to	to	ADP
ddj-47	173	16	a	a	DET
ddj-47	173	17	loss	loss	NOUN
ddj-47	173	18	of	of	ADP
ddj-47	173	19	o−h	o−h	NOUN
ddj-47	173	20	and	and	CCONJ
ddj-47	173	21	one	one	NUM
ddj-47	173	22	h	h	NOUN
ddj-47	173	23	from	from	ADP
ddj-47	173	24	nh2	nh2	PROPN
ddj-47	173	25	.	.	PUNCT
ddj-47	174	1	the	the	DET
ddj-47	174	2	flux	flux	PROPN
ddj-47	174	3	tube	tube	NOUN
ddj-47	174	4	from	from	ADP
ddj-47	174	5	trna	trna	NOUN
ddj-47	174	6	to	to	ADP
ddj-47	174	7	o	o	PROPN
ddj-47	174	8	−h	−h	ADV
ddj-47	174	9	becomes	become	VERB
ddj-47	174	10	a	a	DET
ddj-47	174	11	flux	flux	NOUN
ddj-47	174	12	tube	tube	NOUN
ddj-47	174	13	to	to	PART
ddj-47	174	14	water	water	VERB
ddj-47	174	15	molecule	molecule	NOUN
ddj-47	174	16	inheriting	inherit	VERB
ddj-47	174	17	the	the	DET
ddj-47	174	18	color	color	NOUN
ddj-47	174	19	of	of	ADP
ddj-47	174	20	x	x	NOUN
ddj-47	174	21	so	so	SCONJ
ddj-47	174	22	that	that	PRON
ddj-47	174	23	o	o	NOUN
ddj-47	175	1	=	=	PUNCT
ddj-47	175	2	−nh2	−nh2	NOUN
ddj-47	175	3	of	of	ADP
ddj-47	175	4	the	the	DET
ddj-47	175	5	amino	amino	NOUN
ddj-47	175	6	-	-	PUNCT
ddj-47	175	7	acid	acid	NOUN
ddj-47	175	8	inside	inside	ADJ
ddj-47	175	9	protein	protein	NOUN
ddj-47	175	10	represents	represent	VERB
ddj-47	175	11	the	the	DET
ddj-47	175	12	conjugate	conjugate	NOUN
ddj-47	175	13	of	of	ADP
ddj-47	175	14	y	y	PROPN
ddj-47	175	15	z.	z.	PROPN
ddj-47	175	16	3	3	X
ddj-47	175	17	.	.	PUNCT
ddj-47	175	18	hydrogen	hydrogen	NOUN
ddj-47	175	19	bonding	bonding	NOUN
ddj-47	175	20	between	between	ADP
ddj-47	175	21	o	o	PROPN
ddj-47	175	22	=	=	SYM
ddj-47	175	23	and	and	CCONJ
ddj-47	175	24	nh	nh	PROPN
ddj-47	175	25	of	of	ADP
ddj-47	175	26	n	n	CCONJ
ddj-47	175	27	:	:	PUNCT
ddj-47	175	28	th	th	X
ddj-47	175	29	and	and	CCONJ
ddj-47	175	30	n+	n+	PUNCT
ddj-47	176	1	k	k	X
ddj-47	176	2	:	:	PUNCT
ddj-47	176	3	th	th	VERB
ddj-47	176	4	amino	amino	NOUN
ddj-47	176	5	-	-	PUNCT
ddj-47	176	6	acids	acid	NOUN
ddj-47	176	7	inside	inside	ADP
ddj-47	176	8	alpha	alpha	NOUN
ddj-47	176	9	helices	helix	NOUN
ddj-47	176	10	and	and	CCONJ
ddj-47	176	11	n	n	CCONJ
ddj-47	176	12	:	:	PUNCT
ddj-47	176	13	th	th	X
ddj-47	176	14	and	and	CCONJ
ddj-47	176	15	n	n	PROPN
ddj-47	177	1	+	+	NOUN
ddj-47	177	2	1	1	NUM
ddj-47	177	3	:	:	PUNCT
ddj-47	177	4	th	th	VERB
ddj-47	177	5	amino	amino	NOUN
ddj-47	177	6	-	-	PUNCT
ddj-47	177	7	acids	acid	NOUN
ddj-47	177	8	inside	inside	ADP
ddj-47	177	9	beta	beta	NOUN
ddj-47	177	10	strands	strand	NOUN
ddj-47	177	11	reduces	reduce	VERB
ddj-47	177	12	effectively	effectively	ADV
ddj-47	177	13	to	to	PART
ddj-47	177	14	base	base	VERB
ddj-47	177	15	pairing	pairing	NOUN
ddj-47	177	16	characterized	characterize	VERB
ddj-47	177	17	by	by	ADP
ddj-47	177	18	y	y	PROPN
ddj-47	177	19	=	=	SYM
ddj-47	177	20	z	z	NOUN
ddj-47	177	21	rule	rule	NOUN
ddj-47	177	22	.	.	PUNCT
ddj-47	178	1	assuming	assume	VERB
ddj-47	178	2	that	that	SCONJ
ddj-47	178	3	flux	flux	NOUN
ddj-47	178	4	tube	tube	NOUN
ddj-47	178	5	is	be	AUX
ddj-47	178	6	only	only	ADV
ddj-47	178	7	a	a	DET
ddj-47	178	8	prerequisite	prerequisite	NOUN
ddj-47	178	9	for	for	ADP
ddj-47	178	10	the	the	DET
ddj-47	178	11	formation	formation	NOUN
ddj-47	178	12	of	of	ADP
ddj-47	178	13	hydrogen	hydrogen	NOUN
ddj-47	178	14	bond	bond	NOUN
ddj-47	178	15	,	,	PUNCT
ddj-47	178	16	y	y	PROPN
ddj-47	178	17	(	(	PUNCT
ddj-47	178	18	n	n	CCONJ
ddj-47	178	19	)	)	PUNCT
ddj-47	178	20	=	=	NOUN
ddj-47	178	21	z(n	z(n	PROPN
ddj-47	178	22	+	+	CCONJ
ddj-47	178	23	k	k	NOUN
ddj-47	178	24	)	)	PUNCT
ddj-47	178	25	or	or	CCONJ
ddj-47	178	26	z(n	z(n	NOUN
ddj-47	178	27	)	)	PUNCT
ddj-47	178	28	=	=	SYM
ddj-47	178	29	y	y	PROPN
ddj-47	178	30	(	(	PUNCT
ddj-47	178	31	n	n	PROPN
ddj-47	178	32	+	+	CCONJ
ddj-47	178	33	k	k	X
ddj-47	178	34	)	)	PUNCT
ddj-47	178	35	allows	allow	VERB
ddj-47	178	36	the	the	DET
ddj-47	178	37	existence	existence	NOUN
ddj-47	178	38	of	of	ADP
ddj-47	178	39	hydrogen	hydrogen	NOUN
ddj-47	178	40	bond	bond	NOUN
ddj-47	178	41	.	.	PUNCT
ddj-47	179	1	the	the	DET
ddj-47	179	2	identification	identification	NOUN
ddj-47	179	3	of	of	ADP
ddj-47	179	4	issn	issn	PROPN
ddj-47	179	5	:	:	PUNCT
ddj-47	179	6	2159	2159	NUM
ddj-47	179	7	-	-	SYM
ddj-47	179	8	0465	0465	NUM
ddj-47	179	9	dna	dna	PROPN
ddj-47	179	10	decipher	decipher	PROPN
ddj-47	179	11	journal	journal	PROPN
ddj-47	179	12	june	june	PROPN
ddj-47	179	13	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	179	14	published	publish	VERB
ddj-47	179	15	by	by	ADP
ddj-47	179	16	quantumdream	quantumdream	PROPN
ddj-47	179	17	,	,	PUNCT
ddj-47	179	18	inc	inc	PROPN
ddj-47	179	19	.	.	PROPN
ddj-47	179	20	dna	dna	PROPN
ddj-47	179	21	decipher	decipher	PROPN
ddj-47	179	22	journal	journal	NOUN
ddj-47	180	1	|	|	ADV
ddj-47	180	2	may	may	AUX
ddj-47	180	3	2013	2013	NUM
ddj-47	180	4	|	|	ADV
ddj-47	180	5	volume	volume	NOUN
ddj-47	180	6	3	3	NUM
ddj-47	180	7	|	|	NOUN
ddj-47	180	8	issue	issue	VERB
ddj-47	180	9	1	1	NUM
ddj-47	180	10	|	|	ADV
ddj-47	180	11	pp	pp	ADJ
ddj-47	180	12	.	.	PUNCT
ddj-47	181	1	58	58	NUM
ddj-47	181	2	-	-	SYM
ddj-47	181	3	88	88	NUM
ddj-47	181	4	64	64	NUM
ddj-47	181	5	pitkänen	pitkänen	NOUN
ddj-47	181	6	,	,	PUNCT
ddj-47	181	7	m.	m.	NOUN
ddj-47	181	8	,	,	PUNCT
ddj-47	181	9	a	a	DET
ddj-47	181	10	model	model	NOUN
ddj-47	181	11	for	for	ADP
ddj-47	181	12	protein	protein	NOUN
ddj-47	181	13	folding	folding	NOUN
ddj-47	181	14	and	and	CCONJ
ddj-47	181	15	biocatalysis	biocatalysis	NOUN
ddj-47	181	16	hydrogen	hydrogen	NOUN
ddj-47	181	17	bond	bond	NOUN
ddj-47	181	18	with	with	ADP
ddj-47	181	19	flux	flux	NOUN
ddj-47	181	20	tube	tube	NOUN
ddj-47	181	21	gives	give	VERB
ddj-47	181	22	a	a	DET
ddj-47	181	23	more	more	ADV
ddj-47	181	24	stringent	stringent	ADJ
ddj-47	181	25	condition	condition	NOUN
ddj-47	181	26	y	y	PROPN
ddj-47	181	27	(	(	PUNCT
ddj-47	181	28	n	n	CCONJ
ddj-47	181	29	)	)	PUNCT
ddj-47	181	30	=	=	SYM
ddj-47	181	31	z(n+k	z(n+k	NUM
ddj-47	181	32	)	)	PUNCT
ddj-47	181	33	.	.	PUNCT
ddj-47	182	1	the	the	DET
ddj-47	182	2	first	first	ADJ
ddj-47	182	3	option	option	NOUN
ddj-47	182	4	is	be	AUX
ddj-47	182	5	favored	favor	VERB
ddj-47	182	6	.	.	PUNCT
ddj-47	183	1	either	either	CCONJ
ddj-47	183	2	condition	condition	NOUN
ddj-47	183	3	is	be	AUX
ddj-47	183	4	extremely	extremely	ADV
ddj-47	183	5	restrictive	restrictive	ADJ
ddj-47	183	6	condition	condition	NOUN
ddj-47	183	7	on	on	ADP
ddj-47	183	8	the	the	DET
ddj-47	183	9	gene	gene	NOUN
ddj-47	183	10	coding	code	VERB
ddj-47	183	11	the	the	DET
ddj-47	183	12	amino	amino	NOUN
ddj-47	183	13	-	-	PUNCT
ddj-47	183	14	acid	acid	NOUN
ddj-47	183	15	unless	unless	SCONJ
ddj-47	183	16	one	one	NUM
ddj-47	183	17	assumes	assume	VERB
ddj-47	183	18	quantum	quantum	ADJ
ddj-47	183	19	counterpart	counterpart	NOUN
ddj-47	183	20	of	of	ADP
ddj-47	183	21	wobble	wobble	ADJ
ddj-47	183	22	base	base	NOUN
ddj-47	183	23	pairing	pair	VERB
ddj-47	183	24	for	for	ADP
ddj-47	183	25	mrna	mrna	PROPN
ddj-47	183	26	or	or	CCONJ
ddj-47	183	27	trna	trna	NOUN
ddj-47	183	28	-	-	PUNCT
ddj-47	183	29	amino	amino	NOUN
ddj-47	183	30	-	-	PUNCT
ddj-47	183	31	acid	acid	NOUN
ddj-47	183	32	pairing	pairing	NOUN
ddj-47	183	33	in	in	ADP
ddj-47	183	34	the	the	DET
ddj-47	183	35	case	case	NOUN
ddj-47	183	36	of	of	ADP
ddj-47	183	37	z	z	PROPN
ddj-47	183	38	nucleotide	nucleotide	NOUN
ddj-47	183	39	(	(	PUNCT
ddj-47	183	40	as	as	SCONJ
ddj-47	183	41	one	one	PRON
ddj-47	183	42	indeed	indeed	ADV
ddj-47	183	43	must	must	AUX
ddj-47	183	44	do	do	AUX
ddj-47	183	45	)	)	PUNCT
ddj-47	183	46	.	.	PUNCT
ddj-47	184	1	note	note	VERB
ddj-47	184	2	that	that	SCONJ
ddj-47	184	3	the	the	DET
ddj-47	184	4	o	o	X
ddj-47	184	5	=	=	SYM
ddj-47	184	6	atom	atom	NOUN
ddj-47	184	7	of	of	ADP
ddj-47	184	8	the	the	DET
ddj-47	184	9	amino	amino	NOUN
ddj-47	184	10	-	-	PUNCT
ddj-47	184	11	acid	acid	NOUN
ddj-47	184	12	is	be	AUX
ddj-47	184	13	in	in	ADP
ddj-47	184	14	a	a	DET
ddj-47	184	15	special	special	ADJ
ddj-47	184	16	role	role	NOUN
ddj-47	184	17	in	in	ADP
ddj-47	184	18	that	that	SCONJ
ddj-47	184	19	it	it	PRON
ddj-47	184	20	can	can	AUX
ddj-47	184	21	have	have	AUX
ddj-47	184	22	hydrogen	hydrogen	NOUN
ddj-47	184	23	bond	bond	NOUN
ddj-47	184	24	flux	flux	NOUN
ddj-47	184	25	tubes	tube	NOUN
ddj-47	184	26	to	to	ADP
ddj-47	184	27	donors	donor	NOUN
ddj-47	184	28	and	and	CCONJ
ddj-47	184	29	flux	flux	VERB
ddj-47	184	30	tube	tube	NOUN
ddj-47	184	31	connections	connection	NOUN
ddj-47	184	32	with	with	ADP
ddj-47	184	33	o	o	NOUN
ddj-47	185	1	=	=	PRON
ddj-47	185	2	:	:	PUNCT
ddj-47	185	3	s	s	X
ddj-47	185	4	of	of	ADP
ddj-47	185	5	other	other	ADJ
ddj-47	185	6	amino	amino	NOUN
ddj-47	185	7	-	-	PUNCT
ddj-47	185	8	acids	acid	NOUN
ddj-47	185	9	,	,	PUNCT
ddj-47	185	10	the	the	DET
ddj-47	185	11	residues	residue	NOUN
ddj-47	185	12	of	of	ADP
ddj-47	185	13	amino	amino	NOUN
ddj-47	185	14	-	-	PUNCT
ddj-47	185	15	acids	acid	NOUN
ddj-47	185	16	containing	contain	VERB
ddj-47	185	17	acceptors	acceptor	NOUN
ddj-47	185	18	(	(	PUNCT
ddj-47	185	19	say	say	INTJ
ddj-47	185	20	o	o	NOUN
ddj-47	185	21	=	=	PUNCT
ddj-47	185	22	or	or	CCONJ
ddj-47	185	23	aromatic	aromatic	ADJ
ddj-47	185	24	ring	ring	NOUN
ddj-47	185	25	)	)	PUNCT
ddj-47	185	26	,	,	PUNCT
ddj-47	185	27	and	and	CCONJ
ddj-47	185	28	with	with	ADP
ddj-47	185	29	the	the	DET
ddj-47	185	30	aromatic	aromatic	ADJ
ddj-47	185	31	rings	ring	NOUN
ddj-47	185	32	of	of	ADP
ddj-47	185	33	say	say	PROPN
ddj-47	185	34	atp	atp	PROPN
ddj-47	185	35	.	.	PROPN
ddj-47	186	1	4	4	NUM
ddj-47	186	2	.	.	PUNCT
ddj-47	187	1	the	the	DET
ddj-47	187	2	recombination	recombination	NOUN
ddj-47	187	3	process	process	NOUN
ddj-47	187	4	for	for	ADP
ddj-47	187	5	two	two	NUM
ddj-47	187	6	conjugate	conjugate	ADJ
ddj-47	187	7	dna	dna	NOUN
ddj-47	187	8	-	-	PUNCT
ddj-47	187	9	mrna	mrna	NOUN
ddj-47	187	10	-	-	PUNCT
ddj-47	187	11	trna	trna	ADJ
ddj-47	187	12	-	-	PUNCT
ddj-47	187	13	amino	amino	NOUN
ddj-47	187	14	-	-	PUNCT
ddj-47	187	15	acid	acid	NOUN
ddj-47	187	16	links	link	NOUN
ddj-47	187	17	can	can	AUX
ddj-47	187	18	transform	transform	VERB
ddj-47	187	19	the	the	DET
ddj-47	187	20	flux	flux	NOUN
ddj-47	187	21	tubes	tube	NOUN
ddj-47	187	22	in	in	ADP
ddj-47	187	23	such	such	ADJ
ddj-47	187	24	manner	manner	NOUN
ddj-47	187	25	that	that	SCONJ
ddj-47	187	26	one	one	PRON
ddj-47	187	27	obtains	obtain	VERB
ddj-47	187	28	link	link	NOUN
ddj-47	187	29	between	between	ADP
ddj-47	187	30	the	the	DET
ddj-47	187	31	=	=	ADJ
ddj-47	187	32	o	o	NOUN
ddj-47	187	33	:	:	PUNCT
ddj-47	187	34	s	s	X
ddj-47	187	35	of	of	ADP
ddj-47	187	36	amino	amino	NOUN
ddj-47	187	37	-	-	PUNCT
ddj-47	187	38	acids	acid	NOUN
ddj-47	187	39	a1	a1	NOUN
ddj-47	187	40	and	and	CCONJ
ddj-47	187	41	a2	a2	NOUN
ddj-47	187	42	characterized	characterize	VERB
ddj-47	187	43	by	by	ADP
ddj-47	187	44	y	y	PROPN
ddj-47	187	45	and	and	CCONJ
ddj-47	187	46	yc	yc	PROPN
ddj-47	187	47	.	.	PUNCT
ddj-47	188	1	besides	besides	SCONJ
ddj-47	188	2	hydrogen	hydrogen	NOUN
ddj-47	188	3	bonding	bonding	NOUN
ddj-47	188	4	this	this	DET
ddj-47	188	5	mechanism	mechanism	NOUN
ddj-47	188	6	could	could	AUX
ddj-47	188	7	be	be	AUX
ddj-47	188	8	central	central	ADJ
ddj-47	188	9	in	in	ADP
ddj-47	188	10	the	the	DET
ddj-47	188	11	enzyme	enzyme	NOUN
ddj-47	188	12	substrate	substrate	NOUN
ddj-47	188	13	interaction	interaction	NOUN
ddj-47	188	14	.	.	PUNCT
ddj-47	189	1	the	the	DET
ddj-47	189	2	process	process	NOUN
ddj-47	189	3	would	would	AUX
ddj-47	189	4	pair	pair	VERB
ddj-47	189	5	trnas	trnas	NOUN
ddj-47	189	6	corresponding	correspond	VERB
ddj-47	189	7	to	to	ADP
ddj-47	189	8	y	y	PROPN
ddj-47	189	9	and	and	CCONJ
ddj-47	189	10	yc	yc	PROPN
ddj-47	189	11	together	together	ADV
ddj-47	189	12	to	to	PART
ddj-47	189	13	give	give	VERB
ddj-47	189	14	dna	dna	PROPN
ddj-47	189	15	-	-	PUNCT
ddj-47	189	16	mrna	mrna	NOUN
ddj-47	189	17	-	-	PUNCT
ddj-47	189	18	trna	trna	ADJ
ddj-47	189	19	-	-	PUNCT
ddj-47	189	20	trna	trna	ADJ
ddj-47	189	21	-	-	PUNCT
ddj-47	189	22	mrna	mrna	NOUN
ddj-47	189	23	-	-	PUNCT
ddj-47	189	24	dna	dna	PROPN
ddj-47	189	25	link	link	NOUN
ddj-47	189	26	providing	provide	VERB
ddj-47	189	27	a	a	DET
ddj-47	189	28	memory	memory	NOUN
ddj-47	189	29	representation	representation	NOUN
ddj-47	189	30	about	about	ADP
ddj-47	189	31	aminoacid	aminoacid	NOUN
ddj-47	189	32	pairing	pair	VERB
ddj-47	189	33	a1	a1	NOUN
ddj-47	189	34	−a2	−a2	NOUN
ddj-47	189	35	.	.	PUNCT
ddj-47	190	1	one	one	PRON
ddj-47	190	2	could	could	AUX
ddj-47	190	3	say	say	VERB
ddj-47	190	4	that	that	SCONJ
ddj-47	190	5	magnetic	magnetic	ADJ
ddj-47	190	6	body	body	NOUN
ddj-47	190	7	creates	create	VERB
ddj-47	190	8	with	with	ADP
ddj-47	190	9	the	the	DET
ddj-47	190	10	mediation	mediation	NOUN
ddj-47	190	11	of	of	ADP
ddj-47	190	12	the	the	DET
ddj-47	190	13	genome	genome	NOUN
ddj-47	190	14	dynamical	dynamical	ADJ
ddj-47	190	15	tqc	tqc	ADJ
ddj-47	190	16	programs	program	NOUN
ddj-47	190	17	to	to	PART
ddj-47	190	18	which	which	PRON
ddj-47	190	19	much	much	ADJ
ddj-47	190	20	of	of	ADP
ddj-47	190	21	the	the	DET
ddj-47	190	22	bio	bio	ADJ
ddj-47	190	23	-	-	ADJ
ddj-47	190	24	molecular	molecular	ADJ
ddj-47	190	25	activity	activity	NOUN
ddj-47	190	26	reduces	reduce	VERB
ddj-47	190	27	.	.	PUNCT
ddj-47	191	1	not	not	PART
ddj-47	191	2	all	all	ADV
ddj-47	191	3	however	however	ADV
ddj-47	191	4	,	,	PUNCT
ddj-47	191	5	since	since	SCONJ
ddj-47	191	6	two	two	NUM
ddj-47	191	7	amino	amino	NOUN
ddj-47	191	8	-	-	PUNCT
ddj-47	191	9	acid	acid	NOUN
ddj-47	191	10	pairs	pair	NOUN
ddj-47	191	11	a1	a1	NOUN
ddj-47	191	12	−	−	PROPN
ddj-47	191	13	a2	a2	PROPN
ddj-47	191	14	and	and	CCONJ
ddj-47	191	15	a3	a3	PROPN
ddj-47	191	16	−	−	PROPN
ddj-47	191	17	a4	a4	NOUN
ddj-47	191	18	can	can	AUX
ddj-47	191	19	recombine	recombine	VERB
ddj-47	191	20	to	to	AUX
ddj-47	191	21	a1	a1	VERB
ddj-47	191	22	−	−	PROPN
ddj-47	191	23	a4	a4	NOUN
ddj-47	191	24	and	and	CCONJ
ddj-47	191	25	a3	a3	NOUN
ddj-47	191	26	−	−	PROPN
ddj-47	191	27	a2	a2	PROPN
ddj-47	191	28	without	without	ADP
ddj-47	191	29	dna	dna	PROPN
ddj-47	191	30	knowing	know	VERB
ddj-47	191	31	anything	anything	PRON
ddj-47	191	32	about	about	ADP
ddj-47	191	33	it	it	PRON
ddj-47	191	34	.	.	PUNCT
ddj-47	192	1	magnetic	magnetic	ADJ
ddj-47	192	2	body	body	NOUN
ddj-47	192	3	would	would	AUX
ddj-47	192	4	however	however	ADV
ddj-47	192	5	know	know	VERB
ddj-47	192	6	.	.	PUNCT
ddj-47	193	1	5	5	X
ddj-47	193	2	.	.	X
ddj-47	193	3	the	the	DET
ddj-47	193	4	constant	constant	ADJ
ddj-47	193	5	part	part	NOUN
ddj-47	193	6	of	of	ADP
ddj-47	193	7	non	non	ADJ
ddj-47	193	8	-	-	ADJ
ddj-47	193	9	hydrogen	hydrogen	ADJ
ddj-47	193	10	bonded	bond	VERB
ddj-47	193	11	amino	amino	NOUN
ddj-47	193	12	-	-	PUNCT
ddj-47	193	13	acid	acid	NOUN
ddj-47	193	14	inside	inside	ADJ
ddj-47	193	15	protein	protein	NOUN
ddj-47	193	16	would	would	AUX
ddj-47	193	17	behave	behave	VERB
ddj-47	193	18	like	like	ADP
ddj-47	193	19	yczc	yczc	NOUN
ddj-47	193	20	if	if	SCONJ
ddj-47	193	21	amino	amino	NOUN
ddj-47	193	22	-	-	PUNCT
ddj-47	193	23	acid	acid	NOUN
ddj-47	193	24	is	be	AUX
ddj-47	193	25	coded	code	VERB
ddj-47	193	26	by	by	ADP
ddj-47	193	27	xy	xy	PROPN
ddj-47	193	28	z.	z.	PROPN
ddj-47	194	1	the	the	DET
ddj-47	194	2	cooh	cooh	PROPN
ddj-47	194	3	end	end	NOUN
ddj-47	194	4	of	of	ADP
ddj-47	194	5	protein	protein	NOUN
ddj-47	194	6	would	would	AUX
ddj-47	194	7	behave	behave	VERB
ddj-47	194	8	like	like	ADP
ddj-47	194	9	xcyczc	xcyczc	NOUN
ddj-47	194	10	.	.	PUNCT
ddj-47	195	1	also	also	ADV
ddj-47	195	2	flux	flux	VERB
ddj-47	195	3	tubes	tube	NOUN
ddj-47	195	4	connecting	connect	VERB
ddj-47	195	5	the	the	DET
ddj-47	195	6	residue	residue	NOUN
ddj-47	195	7	groups	group	NOUN
ddj-47	195	8	become	become	VERB
ddj-47	195	9	possible	possible	ADJ
ddj-47	195	10	and	and	CCONJ
ddj-47	195	11	protein	protein	NOUN
ddj-47	195	12	does	do	AUX
ddj-47	195	13	not	not	PART
ddj-47	195	14	behave	behave	VERB
ddj-47	195	15	like	like	ADP
ddj-47	195	16	single	single	ADJ
ddj-47	195	17	nucleotide	nucleotide	NOUN
ddj-47	195	18	anymore	anymore	ADV
ddj-47	195	19	.	.	PUNCT
ddj-47	196	1	by	by	ADP
ddj-47	196	2	color	color	NOUN
ddj-47	196	3	inheritance	inheritance	NOUN
ddj-47	196	4	everything	everything	PRON
ddj-47	196	5	resulting	result	VERB
ddj-47	196	6	in	in	ADP
ddj-47	196	7	the	the	DET
ddj-47	196	8	reconnection	reconnection	NOUN
ddj-47	196	9	process	process	NOUN
ddj-47	196	10	between	between	ADP
ddj-47	196	11	o	o	NOUN
ddj-47	196	12	=	=	PUNCT
ddj-47	196	13	and	and	CCONJ
ddj-47	196	14	nh2	nh2	PROPN
ddj-47	196	15	and	and	CCONJ
ddj-47	196	16	residues	residue	NOUN
ddj-47	196	17	reduces	reduce	VERB
ddj-47	196	18	in	in	ADP
ddj-47	196	19	a	a	DET
ddj-47	196	20	well	well	ADV
ddj-47	196	21	-	-	PUNCT
ddj-47	196	22	defined	define	VERB
ddj-47	196	23	sense	sense	NOUN
ddj-47	196	24	to	to	ADP
ddj-47	196	25	the	the	DET
ddj-47	196	26	genetic	genetic	ADJ
ddj-47	196	27	code	code	NOUN
ddj-47	196	28	.	.	PUNCT
ddj-47	197	1	2.3	2.3	NUM
ddj-47	197	2	realization	realization	NOUN
ddj-47	197	3	of	of	ADP
ddj-47	197	4	flux	flux	NOUN
ddj-47	197	5	tubes	tube	NOUN
ddj-47	197	6	the	the	DET
ddj-47	197	7	basic	basic	ADJ
ddj-47	197	8	questions	question	NOUN
ddj-47	197	9	about	about	ADP
ddj-47	197	10	flux	flux	NOUN
ddj-47	197	11	are	be	AUX
ddj-47	197	12	following	follow	VERB
ddj-47	197	13	.	.	PUNCT
ddj-47	198	1	where	where	SCONJ
ddj-47	198	2	do	do	AUX
ddj-47	198	3	they	they	PRON
ddj-47	198	4	begin	begin	VERB
ddj-47	198	5	,	,	PUNCT
ddj-47	198	6	where	where	SCONJ
ddj-47	198	7	do	do	AUX
ddj-47	198	8	they	they	PRON
ddj-47	198	9	end	end	VERB
ddj-47	198	10	,	,	PUNCT
ddj-47	198	11	and	and	CCONJ
ddj-47	198	12	do	do	AUX
ddj-47	198	13	they	they	PRON
ddj-47	198	14	have	have	VERB
ddj-47	198	15	intermediate	intermediate	ADJ
ddj-47	198	16	plugs	plug	NOUN
ddj-47	198	17	which	which	PRON
ddj-47	198	18	allow	allow	VERB
ddj-47	198	19	temporary	temporary	ADJ
ddj-47	198	20	cutting	cutting	NOUN
ddj-47	198	21	of	of	ADP
ddj-47	198	22	the	the	DET
ddj-47	198	23	flux	flux	NOUN
ddj-47	198	24	tube	tube	NOUN
ddj-47	198	25	.	.	PUNCT
ddj-47	199	1	2.3.1	2.3.1	NUM
ddj-47	199	2	where	where	SCONJ
ddj-47	199	3	do	do	AUX
ddj-47	199	4	flux	flux	NOUN
ddj-47	199	5	tubes	tube	NOUN
ddj-47	199	6	begin	begin	VERB
ddj-47	199	7	from	from	ADP
ddj-47	199	8	?	?	PUNCT
ddj-47	200	1	the	the	DET
ddj-47	200	2	view	view	NOUN
ddj-47	200	3	about	about	ADP
ddj-47	200	4	magnetic	magnetic	ADJ
ddj-47	200	5	body	body	NOUN
ddj-47	200	6	as	as	ADP
ddj-47	200	7	a	a	DET
ddj-47	200	8	controller	controller	NOUN
ddj-47	200	9	of	of	ADP
ddj-47	200	10	biological	biological	ADJ
ddj-47	200	11	body	body	NOUN
ddj-47	200	12	using	use	VERB
ddj-47	200	13	genome	genome	NOUN
ddj-47	200	14	as	as	ADP
ddj-47	200	15	a	a	DET
ddj-47	200	16	control	control	NOUN
ddj-47	200	17	tool	tool	NOUN
ddj-47	200	18	suggests	suggest	VERB
ddj-47	200	19	that	that	SCONJ
ddj-47	200	20	dna	dna	PROPN
ddj-47	200	21	is	be	AUX
ddj-47	200	22	to	to	ADP
ddj-47	200	23	a	a	DET
ddj-47	200	24	high	high	ADJ
ddj-47	200	25	degree	degree	NOUN
ddj-47	200	26	responsible	responsible	ADJ
ddj-47	200	27	for	for	ADP
ddj-47	200	28	directed	direct	VERB
ddj-47	200	29	attention	attention	NOUN
ddj-47	200	30	and	and	CCONJ
ddj-47	200	31	other	other	ADJ
ddj-47	200	32	molecules	molecule	NOUN
ddj-47	200	33	as	as	ADP
ddj-47	200	34	targets	target	NOUN
ddj-47	200	35	so	so	SCONJ
ddj-47	200	36	that	that	SCONJ
ddj-47	200	37	flux	flux	NOUN
ddj-47	200	38	tubes	tube	NOUN
ddj-47	200	39	emanate	emanate	VERB
ddj-47	200	40	from	from	ADP
ddj-47	200	41	dna	dna	PROPN
ddj-47	200	42	nucleotides	nucleotide	NOUN
ddj-47	200	43	.	.	PUNCT
ddj-47	201	1	the	the	DET
ddj-47	201	2	reason	reason	NOUN
ddj-47	201	3	would	would	AUX
ddj-47	201	4	be	be	AUX
ddj-47	201	5	that	that	SCONJ
ddj-47	201	6	the	the	DET
ddj-47	201	7	aromatic	aromatic	ADJ
ddj-47	201	8	cycles	cycle	NOUN
ddj-47	201	9	of	of	ADP
ddj-47	201	10	dna	dna	PROPN
ddj-47	201	11	correspond	correspond	VERB
ddj-47	201	12	to	to	ADP
ddj-47	201	13	larger	large	ADJ
ddj-47	201	14	value	value	NOUN
ddj-47	201	15	of	of	ADP
ddj-47	201	16	planck	planck	NOUN
ddj-47	201	17	constant	constant	ADJ
ddj-47	201	18	.	.	PUNCT
ddj-47	202	1	some	some	DET
ddj-47	202	2	chemical	chemical	NOUN
ddj-47	202	3	or	or	CCONJ
ddj-47	202	4	geometric	geometric	ADJ
ddj-47	202	5	property	property	NOUN
ddj-47	202	6	of	of	ADP
ddj-47	202	7	dna	dna	PROPN
ddj-47	202	8	nucleotides	nucleotide	NOUN
ddj-47	202	9	or	or	CCONJ
ddj-47	202	10	of	of	ADP
ddj-47	202	11	dna	dna	PROPN
ddj-47	202	12	nucleotides	nucleotide	NOUN
ddj-47	202	13	of	of	ADP
ddj-47	202	14	dna	dna	NOUN
ddj-47	202	15	strand	strand	NOUN
ddj-47	202	16	could	could	AUX
ddj-47	202	17	raise	raise	VERB
ddj-47	202	18	them	they	PRON
ddj-47	202	19	to	to	ADP
ddj-47	202	20	the	the	DET
ddj-47	202	21	role	role	NOUN
ddj-47	202	22	of	of	ADP
ddj-47	202	23	subject	subject	NOUN
ddj-47	202	24	.	.	PUNCT
ddj-47	203	1	aromatic	aromatic	ADJ
ddj-47	203	2	cycle	cycle	NOUN
ddj-47	203	3	property	property	NOUN
ddj-47	203	4	correlates	correlate	VERB
ddj-47	203	5	with	with	ADP
ddj-47	203	6	the	the	DET
ddj-47	203	7	symmetries	symmetry	NOUN
ddj-47	203	8	associated	associate	VERB
ddj-47	203	9	with	with	ADP
ddj-47	203	10	large	large	ADJ
ddj-47	203	11	value	value	NOUN
ddj-47	203	12	of	of	ADP
ddj-47	203	13	planck	planck	NOUN
ddj-47	203	14	constant	constant	ADJ
ddj-47	203	15	and	and	CCONJ
ddj-47	203	16	is	be	AUX
ddj-47	203	17	the	the	DET
ddj-47	203	18	best	good	ADJ
ddj-47	203	19	candidate	candidate	NOUN
ddj-47	203	20	for	for	ADP
ddj-47	203	21	this	this	DET
ddj-47	203	22	property	property	NOUN
ddj-47	203	23	.	.	PUNCT
ddj-47	204	1	if	if	SCONJ
ddj-47	204	2	this	this	DET
ddj-47	204	3	picture	picture	NOUN
ddj-47	204	4	is	be	AUX
ddj-47	204	5	accepted	accept	VERB
ddj-47	204	6	then	then	ADV
ddj-47	204	7	also	also	ADV
ddj-47	204	8	some	some	DET
ddj-47	204	9	amino	amino	NOUN
ddj-47	204	10	-	-	PUNCT
ddj-47	204	11	acid	acid	NOUN
ddj-47	204	12	residues	residue	NOUN
ddj-47	204	13	might	might	AUX
ddj-47	204	14	act	act	VERB
ddj-47	204	15	as	as	ADP
ddj-47	204	16	subjects	subject	NOUN
ddj-47	204	17	/	/	SYM
ddj-47	204	18	objects	object	NOUN
ddj-47	204	19	depending	depend	VERB
ddj-47	204	20	on	on	ADP
ddj-47	204	21	the	the	DET
ddj-47	204	22	option	option	NOUN
ddj-47	204	23	.	.	PUNCT
ddj-47	205	1	phe	phe	NOUN
ddj-47	205	2	,	,	PUNCT
ddj-47	205	3	his	his	PRON
ddj-47	205	4	,	,	PUNCT
ddj-47	205	5	trp	trp	PROPN
ddj-47	205	6	,	,	PUNCT
ddj-47	205	7	tyr	tyr	PROPN
ddj-47	205	8	contain	contain	VERB
ddj-47	205	9	aromatic	aromatic	ADJ
ddj-47	205	10	cycle	cycle	NOUN
ddj-47	205	11	.	.	PUNCT
ddj-47	206	1	the	the	DET
ddj-47	206	2	derivatives	derivative	NOUN
ddj-47	206	3	of	of	ADP
ddj-47	206	4	trp	trp	PROPN
ddj-47	206	5	and	and	CCONJ
ddj-47	206	6	tyr	tyr	PROPN
ddj-47	206	7	act	act	PROPN
ddj-47	206	8	as	as	ADP
ddj-47	206	9	neurotransmitters	neurotransmitter	NOUN
ddj-47	206	10	and	and	CCONJ
ddj-47	206	11	his	his	PRON
ddj-47	206	12	is	be	AUX
ddj-47	206	13	extremely	extremely	ADV
ddj-47	206	14	effective	effective	ADJ
ddj-47	206	15	nucleophilic	nucleophilic	ADJ
ddj-47	206	16	catalyst	catalyst	NOUN
ddj-47	206	17	.	.	PUNCT
ddj-47	207	1	this	this	PRON
ddj-47	207	2	would	would	AUX
ddj-47	207	3	make	make	VERB
ddj-47	207	4	possible	possible	ADJ
ddj-47	207	5	more	more	ADV
ddj-47	207	6	specific	specific	ADJ
ddj-47	207	7	catalytic	catalytic	ADJ
ddj-47	207	8	mechanisms	mechanism	NOUN
ddj-47	207	9	through	through	ADP
ddj-47	207	10	the	the	DET
ddj-47	207	11	pairing	pairing	NOUN
ddj-47	207	12	of	of	ADP
ddj-47	207	13	phe	phe	PROPN
ddj-47	207	14	,	,	PUNCT
ddj-47	207	15	his	his	PRON
ddj-47	207	16	,	,	PUNCT
ddj-47	207	17	trp	trp	PROPN
ddj-47	207	18	,	,	PUNCT
ddj-47	207	19	and	and	CCONJ
ddj-47	207	20	tyr	tyr	X
ddj-47	207	21	with	with	ADP
ddj-47	207	22	residues	residue	NOUN
ddj-47	207	23	having	have	VERB
ddj-47	207	24	flux	flux	NOUN
ddj-47	207	25	tube	tube	NOUN
ddj-47	207	26	terminals	terminal	NOUN
ddj-47	207	27	.	.	PUNCT
ddj-47	208	1	this	this	PRON
ddj-47	208	2	raises	raise	VERB
ddj-47	208	3	the	the	DET
ddj-47	208	4	question	question	NOUN
ddj-47	208	5	about	about	ADP
ddj-47	208	6	the	the	DET
ddj-47	208	7	physical	physical	ADJ
ddj-47	208	8	interaction	interaction	NOUN
ddj-47	208	9	determining	determine	VERB
ddj-47	208	10	the	the	DET
ddj-47	208	11	color	color	NOUN
ddj-47	208	12	of	of	ADP
ddj-47	208	13	the	the	DET
ddj-47	208	14	strand	strand	NOUN
ddj-47	208	15	emerging	emerge	VERB
ddj-47	208	16	from	from	ADP
ddj-47	208	17	the	the	DET
ddj-47	208	18	aromatic	aromatic	ADJ
ddj-47	208	19	cycle	cycle	NOUN
ddj-47	208	20	.	.	PUNCT
ddj-47	209	1	the	the	DET
ddj-47	209	2	interaction	interaction	NOUN
ddj-47	209	3	energy	energy	NOUN
ddj-47	209	4	of	of	ADP
ddj-47	209	5	quark	quark	NOUN
ddj-47	209	6	at	at	ADP
ddj-47	209	7	the	the	DET
ddj-47	209	8	end	end	NOUN
ddj-47	209	9	of	of	ADP
ddj-47	209	10	flux	flux	NOUN
ddj-47	209	11	tube	tube	NOUN
ddj-47	209	12	with	with	ADP
ddj-47	209	13	the	the	DET
ddj-47	209	14	classical	classical	ADJ
ddj-47	209	15	electromagnetic	electromagnetic	ADJ
ddj-47	209	16	fields	field	NOUN
ddj-47	209	17	of	of	ADP
ddj-47	209	18	nuclei	nucleus	NOUN
ddj-47	209	19	and	and	CCONJ
ddj-47	209	20	electrons	electron	NOUN
ddj-47	209	21	of	of	ADP
ddj-47	209	22	the	the	DET
ddj-47	209	23	ring	ring	NOUN
ddj-47	209	24	should	should	AUX
ddj-47	209	25	determine	determine	VERB
ddj-47	209	26	this	this	PRON
ddj-47	209	27	.	.	PUNCT
ddj-47	210	1	the	the	DET
ddj-47	210	2	wormhole	wormhole	NOUN
ddj-47	210	3	contact	contact	NOUN
ddj-47	210	4	containing	contain	VERB
ddj-47	210	5	quark	quark	PROPN
ddj-47	210	6	/	/	SYM
ddj-47	210	7	antiquark	antiquark	NOUN
ddj-47	210	8	at	at	ADP
ddj-47	210	9	the	the	DET
ddj-47	210	10	throat	throat	NOUN
ddj-47	210	11	at	at	ADP
ddj-47	210	12	space	space	NOUN
ddj-47	210	13	-	-	PUNCT
ddj-47	210	14	time	time	NOUN
ddj-47	210	15	sheet	sheet	NOUN
ddj-47	210	16	containing	contain	VERB
ddj-47	210	17	nuclei	nucleus	NOUN
ddj-47	210	18	and	and	CCONJ
ddj-47	210	19	electrons	electron	NOUN
ddj-47	210	20	could	could	AUX
ddj-47	210	21	also	also	ADV
ddj-47	210	22	delocalize	delocalize	VERB
ddj-47	210	23	inside	inside	ADP
ddj-47	210	24	the	the	DET
ddj-47	210	25	ring	ring	NOUN
ddj-47	210	26	.	.	PUNCT
ddj-47	211	1	one	one	NUM
ddj-47	211	2	of	of	ADP
ddj-47	211	3	the	the	DET
ddj-47	211	4	earliest	early	ADJ
ddj-47	211	5	hypothesis	hypothesis	NOUN
ddj-47	211	6	of	of	ADP
ddj-47	211	7	tgd	tgd	PROPN
ddj-47	211	8	inspired	inspire	VERB
ddj-47	211	9	model	model	NOUN
ddj-47	211	10	for	for	ADP
ddj-47	211	11	living	live	VERB
ddj-47	211	12	matter	matter	NOUN
ddj-47	211	13	was	be	AUX
ddj-47	211	14	that	that	PRON
ddj-47	211	15	wormhole	wormhole	NOUN
ddj-47	211	16	bose	bose	NOUN
ddj-47	211	17	-	-	PUNCT
ddj-47	211	18	einstein	einstein	NOUN
ddj-47	211	19	condensates	condensate	NOUN
ddj-47	211	20	could	could	AUX
ddj-47	211	21	be	be	AUX
ddj-47	211	22	crucial	crucial	ADJ
ddj-47	211	23	for	for	ADP
ddj-47	211	24	understanding	understanding	NOUN
ddj-47	211	25	of	of	ADP
ddj-47	211	26	the	the	DET
ddj-47	211	27	behavior	behavior	NOUN
ddj-47	211	28	of	of	ADP
ddj-47	211	29	biomolecules	biomolecule	NOUN
ddj-47	211	30	[	[	X
ddj-47	211	31	21	21	NUM
ddj-47	211	32	]	]	PUNCT
ddj-47	211	33	.	.	PUNCT
ddj-47	212	1	wormhole	wormhole	NOUN
ddj-47	212	2	throats	throat	NOUN
ddj-47	212	3	with	with	ADP
ddj-47	212	4	quark	quark	NOUN
ddj-47	212	5	and	and	CCONJ
ddj-47	212	6	antiquark	antiquark	NOUN
ddj-47	212	7	at	at	ADP
ddj-47	212	8	their	their	PRON
ddj-47	212	9	throats	throat	NOUN
ddj-47	212	10	appear	appear	VERB
ddj-47	212	11	also	also	ADV
ddj-47	212	12	in	in	ADP
ddj-47	212	13	the	the	DET
ddj-47	212	14	model	model	NOUN
ddj-47	212	15	of	of	ADP
ddj-47	212	16	high	high	ADJ
ddj-47	212	17	tc	tc	NOUN
ddj-47	212	18	superconductivity	superconductivity	NOUN
ddj-47	212	19	[	[	X
ddj-47	212	20	15	15	NUM
ddj-47	212	21	]	]	PUNCT
ddj-47	212	22	.	.	PUNCT
ddj-47	213	1	as	as	ADV
ddj-47	213	2	far	far	ADV
ddj-47	213	3	as	as	SCONJ
ddj-47	213	4	couplings	coupling	NOUN
ddj-47	213	5	are	be	AUX
ddj-47	213	6	considered	consider	VERB
ddj-47	213	7	,	,	PUNCT
ddj-47	213	8	these	these	DET
ddj-47	213	9	wormhole	wormhole	NOUN
ddj-47	213	10	contacts	contact	NOUN
ddj-47	213	11	are	be	AUX
ddj-47	213	12	in	in	ADP
ddj-47	213	13	many	many	ADJ
ddj-47	213	14	respects	respect	NOUN
ddj-47	213	15	analogous	analogous	ADJ
ddj-47	213	16	to	to	ADP
ddj-47	213	17	the	the	DET
ddj-47	213	18	so	so	ADV
ddj-47	213	19	called	call	VERB
ddj-47	213	20	axions	axion	NOUN
ddj-47	213	21	predicted	predict	VERB
ddj-47	213	22	by	by	ADP
ddj-47	213	23	some	some	DET
ddj-47	213	24	theories	theory	NOUN
ddj-47	213	25	of	of	ADP
ddj-47	213	26	elementary	elementary	ADJ
ddj-47	213	27	particle	particle	NOUN
ddj-47	213	28	physics	physics	PROPN
ddj-47	213	29	.	.	PUNCT
ddj-47	214	1	the	the	DET
ddj-47	214	2	wormhole	wormhole	NOUN
ddj-47	214	3	issn	issn	VERB
ddj-47	214	4	:	:	PUNCT
ddj-47	214	5	2159	2159	NUM
ddj-47	214	6	-	-	SYM
ddj-47	214	7	0465	0465	NUM
ddj-47	214	8	dna	dna	PROPN
ddj-47	214	9	decipher	decipher	PROPN
ddj-47	214	10	journal	journal	PROPN
ddj-47	214	11	june	june	PROPN
ddj-47	214	12	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	214	13	published	publish	VERB
ddj-47	214	14	by	by	ADP
ddj-47	214	15	quantumdream	quantumdream	PROPN
ddj-47	214	16	,	,	PUNCT
ddj-47	214	17	inc	inc	PROPN
ddj-47	214	18	.	.	PROPN
ddj-47	214	19	dna	dna	PROPN
ddj-47	214	20	decipher	decipher	PROPN
ddj-47	214	21	journal	journal	NOUN
ddj-47	214	22	|	|	ADV
ddj-47	214	23	may	may	AUX
ddj-47	214	24	2013	2013	NUM
ddj-47	214	25	|	|	ADV
ddj-47	214	26	volume	volume	NOUN
ddj-47	214	27	3	3	NUM
ddj-47	214	28	|	|	NOUN
ddj-47	214	29	issue	issue	VERB
ddj-47	214	30	1	1	NUM
ddj-47	214	31	|	|	ADV
ddj-47	214	32	pp	pp	ADJ
ddj-47	214	33	.	.	PUNCT
ddj-47	215	1	58	58	NUM
ddj-47	215	2	-	-	SYM
ddj-47	215	3	88	88	NUM
ddj-47	215	4	65	65	NUM
ddj-47	215	5	pitkänen	pitkänen	NOUN
ddj-47	215	6	,	,	PUNCT
ddj-47	215	7	m.	m.	NOUN
ddj-47	215	8	,	,	PUNCT
ddj-47	215	9	a	a	DET
ddj-47	215	10	model	model	NOUN
ddj-47	215	11	for	for	ADP
ddj-47	215	12	protein	protein	NOUN
ddj-47	215	13	folding	folding	NOUN
ddj-47	215	14	and	and	CCONJ
ddj-47	215	15	biocatalysis	biocatalysis	NOUN
ddj-47	215	16	contact	contact	NOUN
ddj-47	215	17	like	like	ADP
ddj-47	215	18	property	property	NOUN
ddj-47	215	19	is	be	AUX
ddj-47	215	20	by	by	ADP
ddj-47	215	21	no	no	DET
ddj-47	215	22	means	mean	NOUN
ddj-47	215	23	exceptional	exceptional	ADJ
ddj-47	215	24	:	:	PUNCT
ddj-47	215	25	all	all	DET
ddj-47	215	26	gauge	gauge	ADJ
ddj-47	215	27	bosons	boson	NOUN
ddj-47	215	28	correspond	correspond	VERB
ddj-47	215	29	to	to	ADP
ddj-47	215	30	wormhole	wormhole	NOUN
ddj-47	215	31	contacts	contact	NOUN
ddj-47	215	32	in	in	ADP
ddj-47	215	33	tgd	tgd	PROPN
ddj-47	215	34	universe	universe	NOUN
ddj-47	215	35	.	.	PUNCT
ddj-47	216	1	the	the	DET
ddj-47	216	2	only	only	ADJ
ddj-47	216	3	manner	manner	NOUN
ddj-47	216	4	for	for	ADP
ddj-47	216	5	the	the	DET
ddj-47	216	6	electronic	electronic	ADJ
ddj-47	216	7	space	space	NOUN
ddj-47	216	8	-	-	PUNCT
ddj-47	216	9	time	time	NOUN
ddj-47	216	10	sheet	sheet	NOUN
ddj-47	216	11	to	to	PART
ddj-47	216	12	feed	feed	VERB
ddj-47	216	13	its	its	PRON
ddj-47	216	14	electromagnetic	electromagnetic	ADJ
ddj-47	216	15	gauge	gauge	NOUN
ddj-47	216	16	flux	flux	NOUN
ddj-47	216	17	to	to	ADP
ddj-47	216	18	larger	large	ADJ
ddj-47	216	19	space	space	NOUN
ddj-47	216	20	-	-	PUNCT
ddj-47	216	21	time	time	NOUN
ddj-47	216	22	sheets	sheet	NOUN
ddj-47	216	23	using	use	VERB
ddj-47	216	24	exactly	exactly	ADV
ddj-47	216	25	two	two	NUM
ddj-47	216	26	wormhole	wormhole	NOUN
ddj-47	216	27	contacts	contact	NOUN
ddj-47	216	28	is	be	AUX
ddj-47	216	29	to	to	PART
ddj-47	216	30	use	use	VERB
ddj-47	216	31	wormhole	wormhole	NOUN
ddj-47	216	32	contacts	contact	NOUN
ddj-47	216	33	with	with	ADP
ddj-47	216	34	u	u	NOUN
ddj-47	216	35	and	and	CCONJ
ddj-47	216	36	d	d	NOUN
ddj-47	216	37	at	at	ADP
ddj-47	216	38	their	their	PRON
ddj-47	216	39	”	"	PUNCT
ddj-47	216	40	upper	upper	ADJ
ddj-47	216	41	”	"	PUNCT
ddj-47	216	42	throat	throat	NOUN
ddj-47	216	43	(	(	PUNCT
ddj-47	216	44	t	t	PROPN
ddj-47	216	45	,	,	PUNCT
ddj-47	216	46	g	g	NOUN
ddj-47	216	47	)	)	PUNCT
ddj-47	216	48	.	.	PUNCT
ddj-47	217	1	for	for	ADP
ddj-47	217	2	proton	proton	NOUN
ddj-47	217	3	one	one	PRON
ddj-47	217	4	would	would	AUX
ddj-47	217	5	have	have	VERB
ddj-47	217	6	d	d	NOUN
ddj-47	217	7	and	and	CCONJ
ddj-47	217	8	u	u	NOUN
ddj-47	217	9	at	at	ADP
ddj-47	217	10	their	their	PRON
ddj-47	217	11	”	"	PUNCT
ddj-47	217	12	upper	upper	ADJ
ddj-47	217	13	”	"	PUNCT
ddj-47	217	14	throat	throat	NOUN
ddj-47	217	15	(	(	PUNCT
ddj-47	217	16	a	a	DET
ddj-47	217	17	,	,	PUNCT
ddj-47	217	18	c	c	NOUN
ddj-47	217	19	)	)	PUNCT
ddj-47	217	20	.	.	PUNCT
ddj-47	218	1	the	the	DET
ddj-47	218	2	presence	presence	NOUN
ddj-47	218	3	of	of	ADP
ddj-47	218	4	electron	electron	NOUN
ddj-47	218	5	or	or	CCONJ
ddj-47	218	6	proton	proton	NOUN
ddj-47	218	7	at	at	ADP
ddj-47	218	8	nucleotide	nucleotide	ADJ
ddj-47	218	9	space	space	NOUN
ddj-47	218	10	-	-	PUNCT
ddj-47	218	11	time	time	NOUN
ddj-47	218	12	sheet	sheet	NOUN
ddj-47	218	13	near	near	ADP
ddj-47	218	14	the	the	DET
ddj-47	218	15	end	end	NOUN
ddj-47	218	16	of	of	ADP
ddj-47	218	17	flux	flux	NOUN
ddj-47	218	18	tube	tube	NOUN
ddj-47	218	19	might	might	AUX
ddj-47	218	20	allow	allow	VERB
ddj-47	218	21	to	to	PART
ddj-47	218	22	understand	understand	VERB
ddj-47	218	23	the	the	DET
ddj-47	218	24	correlation	correlation	NOUN
ddj-47	218	25	.	.	PUNCT
ddj-47	219	1	the	the	DET
ddj-47	219	2	transfer	transfer	NOUN
ddj-47	219	3	of	of	ADP
ddj-47	219	4	electrons	electron	NOUN
ddj-47	219	5	and	and	CCONJ
ddj-47	219	6	protons	proton	NOUN
ddj-47	219	7	between	between	ADP
ddj-47	219	8	space	space	NOUN
ddj-47	219	9	-	-	PUNCT
ddj-47	219	10	time	time	NOUN
ddj-47	219	11	sheets	sheet	NOUN
ddj-47	219	12	with	with	ADP
ddj-47	219	13	different	different	ADJ
ddj-47	219	14	p	p	ADJ
ddj-47	219	15	-	-	PUNCT
ddj-47	219	16	adic	adic	NOUN
ddj-47	219	17	length	length	NOUN
ddj-47	219	18	scale	scale	NOUN
ddj-47	219	19	is	be	AUX
ddj-47	219	20	basic	basic	ADJ
ddj-47	219	21	element	element	NOUN
ddj-47	219	22	of	of	ADP
ddj-47	219	23	tgd	tgd	PROPN
ddj-47	219	24	based	base	VERB
ddj-47	219	25	model	model	NOUN
ddj-47	219	26	of	of	ADP
ddj-47	219	27	metabolism	metabolism	NOUN
ddj-47	219	28	so	so	SCONJ
ddj-47	219	29	that	that	SCONJ
ddj-47	219	30	there	there	PRON
ddj-47	219	31	might	might	AUX
ddj-47	219	32	be	be	AUX
ddj-47	219	33	some	some	DET
ddj-47	219	34	relation	relation	NOUN
ddj-47	219	35	.	.	PUNCT
ddj-47	220	1	2.3.2	2.3.2	NUM
ddj-47	220	2	acceptors	acceptor	NOUN
ddj-47	220	3	as	as	ADP
ddj-47	220	4	plugs	plug	NOUN
ddj-47	220	5	and	and	CCONJ
ddj-47	220	6	donors	donor	NOUN
ddj-47	220	7	as	as	ADP
ddj-47	220	8	terminals	terminal	NOUN
ddj-47	220	9	of	of	ADP
ddj-47	220	10	flux	flux	NOUN
ddj-47	220	11	tubes	tube	NOUN
ddj-47	220	12	?	?	PUNCT
ddj-47	221	1	standardization	standardization	NOUN
ddj-47	221	2	constraint	constraint	NOUN
ddj-47	221	3	suggests	suggest	VERB
ddj-47	221	4	that	that	SCONJ
ddj-47	221	5	flux	flux	NOUN
ddj-47	221	6	tubes	tube	NOUN
ddj-47	221	7	are	be	AUX
ddj-47	221	8	attached	attach	VERB
ddj-47	221	9	to	to	ADP
ddj-47	221	10	standard	standard	ADJ
ddj-47	221	11	plugs	plug	NOUN
ddj-47	221	12	and	and	CCONJ
ddj-47	221	13	terminals	terminal	NOUN
ddj-47	221	14	.	.	PUNCT
ddj-47	222	1	the	the	DET
ddj-47	222	2	explicit	explicit	ADJ
ddj-47	222	3	study	study	NOUN
ddj-47	222	4	of	of	ADP
ddj-47	222	5	various	various	ADJ
ddj-47	222	6	biological	biological	ADJ
ddj-47	222	7	molecules	molecule	NOUN
ddj-47	222	8	and	and	CCONJ
ddj-47	222	9	the	the	DET
ddj-47	222	10	role	role	NOUN
ddj-47	222	11	of	of	ADP
ddj-47	222	12	water	water	NOUN
ddj-47	222	13	in	in	ADP
ddj-47	222	14	biology	biology	NOUN
ddj-47	222	15	gives	give	VERB
ddj-47	222	16	some	some	DET
ddj-47	222	17	hints	hint	NOUN
ddj-47	222	18	.	.	PUNCT
ddj-47	223	1	1	1	X
ddj-47	223	2	.	.	X
ddj-47	223	3	an	an	DET
ddj-47	223	4	attractive	attractive	ADJ
ddj-47	223	5	idea	idea	NOUN
ddj-47	223	6	is	be	AUX
ddj-47	223	7	that	that	SCONJ
ddj-47	223	8	=	=	PRON
ddj-47	223	9	o	o	NOUN
ddj-47	223	10	serves	serve	VERB
ddj-47	223	11	as	as	ADP
ddj-47	223	12	a	a	DET
ddj-47	223	13	plug	plug	NOUN
ddj-47	223	14	to	to	PART
ddj-47	223	15	which	which	DET
ddj-47	223	16	flux	flux	NOUN
ddj-47	223	17	arrives	arrive	VERB
ddj-47	223	18	and	and	CCONJ
ddj-47	223	19	from	from	ADP
ddj-47	223	20	which	which	PRON
ddj-47	223	21	it	it	PRON
ddj-47	223	22	can	can	AUX
ddj-47	223	23	also	also	ADV
ddj-47	223	24	continue	continue	VERB
ddj-47	223	25	.	.	PUNCT
ddj-47	224	1	for	for	ADP
ddj-47	224	2	the	the	DET
ddj-47	224	3	minimal	minimal	ADJ
ddj-47	224	4	option	option	NOUN
ddj-47	224	5	suggested	suggest	VERB
ddj-47	224	6	by	by	ADP
ddj-47	224	7	hydrogen	hydrogen	NOUN
ddj-47	224	8	bonding	bonding	NOUN
ddj-47	224	9	o	o	NOUN
ddj-47	224	10	=	=	PRON
ddj-47	224	11	could	could	AUX
ddj-47	224	12	be	be	AUX
ddj-47	224	13	connected	connect	VERB
ddj-47	224	14	to	to	ADP
ddj-47	224	15	two	two	NUM
ddj-47	224	16	donors	donor	NOUN
ddj-47	224	17	and	and	CCONJ
ddj-47	224	18	o	o	X
ddj-47	224	19	=	=	PRON
ddj-47	224	20	could	could	AUX
ddj-47	224	21	not	not	PART
ddj-47	224	22	be	be	AUX
ddj-47	224	23	connected	connect	VERB
ddj-47	224	24	to	to	ADP
ddj-47	224	25	o	o	NOUN
ddj-47	225	1	=	=	NOUN
ddj-47	225	2	.	.	PUNCT
ddj-47	226	1	the	the	DET
ddj-47	226	2	assumption	assumption	NOUN
ddj-47	226	3	that	that	SCONJ
ddj-47	226	4	the	the	DET
ddj-47	226	5	flux	flux	NOUN
ddj-47	226	6	tube	tube	NOUN
ddj-47	226	7	can	can	AUX
ddj-47	226	8	connect	connect	VERB
ddj-47	226	9	also	also	ADV
ddj-47	226	10	two	two	NUM
ddj-47	226	11	o	o	NOUN
ddj-47	227	1	=	=	PRON
ddj-47	227	2	:	:	PUNCT
ddj-47	227	3	s	s	VERB
ddj-47	227	4	represents	represent	VERB
ddj-47	227	5	a	a	DET
ddj-47	227	6	hypothesis	hypothesis	NOUN
ddj-47	227	7	going	go	VERB
ddj-47	227	8	outside	outside	ADP
ddj-47	227	9	the	the	DET
ddj-47	227	10	framework	framework	NOUN
ddj-47	227	11	of	of	ADP
ddj-47	227	12	standard	standard	ADJ
ddj-47	227	13	physics	physic	NOUN
ddj-47	227	14	.	.	PUNCT
ddj-47	228	1	a	a	DET
ddj-47	228	2	stronger	strong	ADJ
ddj-47	228	3	assumption	assumption	NOUN
ddj-47	228	4	is	be	AUX
ddj-47	228	5	that	that	SCONJ
ddj-47	228	6	all	all	DET
ddj-47	228	7	acceptors	acceptor	NOUN
ddj-47	228	8	can	can	AUX
ddj-47	228	9	act	act	VERB
ddj-47	228	10	as	as	ADP
ddj-47	228	11	plugs	plug	NOUN
ddj-47	228	12	.	.	PUNCT
ddj-47	229	1	for	for	ADP
ddj-47	229	2	instance	instance	NOUN
ddj-47	229	3	,	,	PUNCT
ddj-47	229	4	the	the	DET
ddj-47	229	5	aromatic	aromatic	ADJ
ddj-47	229	6	rings	ring	NOUN
ddj-47	229	7	of	of	ADP
ddj-47	229	8	dna	dna	PROPN
ddj-47	229	9	nucleotides	nucleotide	NOUN
ddj-47	229	10	could	could	AUX
ddj-47	229	11	act	act	VERB
ddj-47	229	12	as	as	ADP
ddj-47	229	13	acceptors	acceptor	NOUN
ddj-47	229	14	and	and	CCONJ
ddj-47	229	15	be	be	AUX
ddj-47	229	16	connected	connect	VERB
ddj-47	229	17	to	to	ADP
ddj-47	229	18	a	a	DET
ddj-47	229	19	sequence	sequence	NOUN
ddj-47	229	20	of	of	ADP
ddj-47	229	21	o	o	NOUN
ddj-47	229	22	=	=	NOUN
ddj-47	229	23	plugs	plug	NOUN
ddj-47	229	24	eventually	eventually	ADV
ddj-47	229	25	terminating	terminate	VERB
ddj-47	229	26	to	to	ADP
ddj-47	229	27	a	a	DET
ddj-47	229	28	hydrogen	hydrogen	NOUN
ddj-47	229	29	bond	bond	NOUN
ddj-47	229	30	.	.	PUNCT
ddj-47	230	1	2	2	X
ddj-47	230	2	.	.	NUM
ddj-47	230	3	donors	donor	NOUN
ddj-47	230	4	such	such	ADJ
ddj-47	230	5	as	as	ADP
ddj-47	230	6	o	o	PROPN
ddj-47	230	7	−	−	PROPN
ddj-47	230	8	h	h	NOUN
ddj-47	230	9	would	would	AUX
ddj-47	230	10	in	in	ADP
ddj-47	230	11	turn	turn	NOUN
ddj-47	230	12	correspond	correspond	ADV
ddj-47	230	13	to	to	ADP
ddj-47	230	14	a	a	DET
ddj-47	230	15	terminal	terminal	NOUN
ddj-47	230	16	at	at	ADP
ddj-47	230	17	which	which	PRON
ddj-47	230	18	flux	flux	NOUN
ddj-47	230	19	tube	tube	NOUN
ddj-47	230	20	can	can	AUX
ddj-47	230	21	end	end	VERB
ddj-47	230	22	.	.	PUNCT
ddj-47	231	1	one	one	PRON
ddj-47	231	2	might	might	AUX
ddj-47	231	3	be	be	AUX
ddj-47	231	4	very	very	ADV
ddj-47	231	5	naive	naive	ADJ
ddj-47	231	6	and	and	CCONJ
ddj-47	231	7	say	say	VERB
ddj-47	231	8	that	that	SCONJ
ddj-47	231	9	conscious	conscious	ADJ
ddj-47	231	10	bio	bio	NOUN
ddj-47	231	11	-	-	NOUN
ddj-47	231	12	molecules	molecule	NOUN
ddj-47	231	13	have	have	AUX
ddj-47	231	14	learned	learn	VERB
ddj-47	231	15	the	the	DET
ddj-47	231	16	fundamental	fundamental	ADJ
ddj-47	231	17	role	role	NOUN
ddj-47	231	18	of	of	ADP
ddj-47	231	19	oxygen	oxygen	NOUN
ddj-47	231	20	and	and	CCONJ
ddj-47	231	21	water	water	NOUN
ddj-47	231	22	in	in	ADP
ddj-47	231	23	the	the	DET
ddj-47	231	24	metabolism	metabolism	NOUN
ddj-47	231	25	and	and	CCONJ
ddj-47	231	26	become	become	VERB
ddj-47	231	27	very	very	ADV
ddj-47	231	28	attentive	attentive	ADJ
ddj-47	231	29	to	to	ADP
ddj-47	231	30	the	the	DET
ddj-47	231	31	presence	presence	NOUN
ddj-47	231	32	of	of	ADP
ddj-47	231	33	=	=	PUNCT
ddj-47	231	34	o	o	PROPN
ddj-47	231	35	and	and	CCONJ
ddj-47	231	36	o−h	o−h	NOUN
ddj-47	231	37	.	.	PUNCT
ddj-47	232	1	=	=	NOUN
ddj-47	233	1	o	o	NOUN
ddj-47	233	2	appears	appear	VERB
ddj-47	233	3	in	in	ADP
ddj-47	233	4	cooh	cooh	NOUN
ddj-47	233	5	part	part	NOUN
ddj-47	233	6	of	of	ADP
ddj-47	233	7	each	each	DET
ddj-47	233	8	amino	amino	NOUN
ddj-47	233	9	-	-	PUNCT
ddj-47	233	10	acid	acid	NOUN
ddj-47	233	11	so	so	SCONJ
ddj-47	233	12	that	that	SCONJ
ddj-47	233	13	this	this	DET
ddj-47	233	14	part	part	NOUN
ddj-47	233	15	defines	define	VERB
ddj-47	233	16	the	the	DET
ddj-47	233	17	standard	standard	ADJ
ddj-47	233	18	plug	plug	NOUN
ddj-47	233	19	.	.	PUNCT
ddj-47	234	1	=	=	NOUN
ddj-47	235	1	o	o	NOUN
ddj-47	235	2	appears	appear	VERB
ddj-47	235	3	also	also	ADV
ddj-47	235	4	in	in	ADP
ddj-47	235	5	the	the	DET
ddj-47	235	6	residues	residue	NOUN
ddj-47	235	7	of	of	ADP
ddj-47	235	8	asp	asp	PROPN
ddj-47	235	9	,	,	PUNCT
ddj-47	235	10	glu	glu	PROPN
ddj-47	235	11	,	,	PUNCT
ddj-47	235	12	asn	asn	PROPN
ddj-47	235	13	,	,	PUNCT
ddj-47	235	14	gln	gln	PROPN
ddj-47	235	15	.	.	PUNCT
ddj-47	236	1	o	o	NOUN
ddj-47	237	1	−	−	PROPN
ddj-47	237	2	h	h	NOUN
ddj-47	237	3	groups	group	NOUN
ddj-47	237	4	appear	appear	VERB
ddj-47	237	5	inside	inside	ADP
ddj-47	237	6	the	the	DET
ddj-47	237	7	residues	residue	NOUN
ddj-47	237	8	of	of	ADP
ddj-47	237	9	asp	asp	NOUN
ddj-47	237	10	,	,	PUNCT
ddj-47	237	11	glu	glu	NOUN
ddj-47	237	12	and	and	CCONJ
ddj-47	237	13	ser	ser	NOUN
ddj-47	237	14	,	,	PUNCT
ddj-47	237	15	thr	thr	PROPN
ddj-47	237	16	.	.	PUNCT
ddj-47	238	1	3	3	X
ddj-47	238	2	.	.	X
ddj-47	238	3	hydrogen	hydrogen	NOUN
ddj-47	238	4	bonds	bond	NOUN
ddj-47	238	5	x	x	PRON
ddj-47	238	6	−h	−h	ADJ
ddj-47	238	7	−−y	−−y	PROPN
ddj-47	238	8	have	have	VERB
ddj-47	238	9	the	the	DET
ddj-47	238	10	basic	basic	ADJ
ddj-47	238	11	defining	define	VERB
ddj-47	238	12	property	property	NOUN
ddj-47	238	13	associated	associate	VERB
ddj-47	238	14	with	with	ADP
ddj-47	238	15	directed	direct	VERB
ddj-47	238	16	attention	attention	NOUN
ddj-47	238	17	,	,	PUNCT
ddj-47	238	18	namely	namely	ADV
ddj-47	238	19	the	the	DET
ddj-47	238	20	asymmetry	asymmetry	NOUN
ddj-47	238	21	between	between	ADP
ddj-47	238	22	donor	donor	NOUN
ddj-47	238	23	x	x	NOUN
ddj-47	238	24	and	and	CCONJ
ddj-47	238	25	acceptor	acceptor	PROPN
ddj-47	238	26	y	y	PROPN
ddj-47	238	27	.	.	PUNCT
ddj-47	239	1	hence	hence	ADV
ddj-47	239	2	there	there	PRON
ddj-47	239	3	is	be	VERB
ddj-47	239	4	a	a	DET
ddj-47	239	5	great	great	ADJ
ddj-47	239	6	temptation	temptation	NOUN
ddj-47	239	7	consider	consider	VERB
ddj-47	239	8	the	the	DET
ddj-47	239	9	possibility	possibility	NOUN
ddj-47	239	10	that	that	SCONJ
ddj-47	239	11	hydrogen	hydrogen	NOUN
ddj-47	239	12	bonds	bond	NOUN
ddj-47	239	13	correspond	correspond	VERB
ddj-47	239	14	to	to	ADP
ddj-47	239	15	short	short	ADJ
ddj-47	239	16	flux	flux	PROPN
ddj-47	239	17	tubes	tube	NOUN
ddj-47	239	18	,	,	PUNCT
ddj-47	239	19	that	that	PRON
ddj-47	239	20	flux	flux	NOUN
ddj-47	239	21	tubes	tube	NOUN
ddj-47	239	22	could	could	AUX
ddj-47	239	23	be	be	AUX
ddj-47	239	24	seen	see	VERB
ddj-47	239	25	as	as	ADP
ddj-47	239	26	generalized	generalized	ADJ
ddj-47	239	27	hydrogen	hydrogen	NOUN
ddj-47	239	28	bonds	bond	NOUN
ddj-47	239	29	.	.	PUNCT
ddj-47	240	1	quite	quite	ADV
ddj-47	240	2	generally	generally	ADV
ddj-47	240	3	,	,	PUNCT
ddj-47	240	4	y	y	PROPN
ddj-47	240	5	could	could	AUX
ddj-47	240	6	be	be	AUX
ddj-47	240	7	seen	see	VERB
ddj-47	240	8	as	as	ADP
ddj-47	240	9	the	the	DET
ddj-47	240	10	object	object	NOUN
ddj-47	240	11	of	of	ADP
ddj-47	240	12	directed	direct	VERB
ddj-47	240	13	attention	attention	NOUN
ddj-47	240	14	of	of	ADP
ddj-47	240	15	x	x	PUNCT
ddj-47	240	16	characterized	characterize	VERB
ddj-47	240	17	by	by	ADP
ddj-47	240	18	larger	large	ADJ
ddj-47	240	19	value	value	NOUN
ddj-47	240	20	of	of	ADP
ddj-47	240	21	planck	planck	NOUN
ddj-47	240	22	constant	constant	ADJ
ddj-47	240	23	.	.	PUNCT
ddj-47	241	1	the	the	DET
ddj-47	241	2	assumption	assumption	NOUN
ddj-47	241	3	that	that	SCONJ
ddj-47	241	4	two	two	NUM
ddj-47	241	5	o	o	NOUN
ddj-47	241	6	=	=	X
ddj-47	241	7	:	:	PUNCT
ddj-47	241	8	s	s	NUM
ddj-47	241	9	,	,	PUNCT
ddj-47	241	10	or	or	CCONJ
ddj-47	241	11	even	even	ADV
ddj-47	241	12	two	two	NUM
ddj-47	241	13	acceptors	acceptor	NOUN
ddj-47	241	14	of	of	ADP
ddj-47	241	15	a	a	DET
ddj-47	241	16	hydrogen	hydrogen	NOUN
ddj-47	241	17	bond	bond	NOUN
ddj-47	241	18	,	,	PUNCT
ddj-47	241	19	can	can	AUX
ddj-47	241	20	be	be	AUX
ddj-47	241	21	connected	connect	VERB
ddj-47	241	22	by	by	ADP
ddj-47	241	23	a	a	DET
ddj-47	241	24	flux	flux	NOUN
ddj-47	241	25	tube	tube	NOUN
ddj-47	241	26	means	mean	VERB
ddj-47	241	27	more	more	ADJ
ddj-47	241	28	than	than	ADP
ddj-47	241	29	a	a	DET
ddj-47	241	30	generalization	generalization	NOUN
ddj-47	241	31	of	of	ADP
ddj-47	241	32	hydrogen	hydrogen	NOUN
ddj-47	241	33	bond	bond	NOUN
ddj-47	241	34	the	the	DET
ddj-47	241	35	connection	connection	NOUN
ddj-47	241	36	with	with	ADP
ddj-47	241	37	a	a	DET
ddj-47	241	38	donor	donor	NOUN
ddj-47	241	39	would	would	AUX
ddj-47	241	40	correspond	correspond	VERB
ddj-47	241	41	only	only	ADV
ddj-47	241	42	to	to	ADP
ddj-47	241	43	the	the	DET
ddj-47	241	44	final	final	ADJ
ddj-47	241	45	step	step	NOUN
ddj-47	241	46	in	in	ADP
ddj-47	241	47	the	the	DET
ddj-47	241	48	sequence	sequence	NOUN
ddj-47	241	49	of	of	ADP
ddj-47	241	50	flux	flux	NOUN
ddj-47	241	51	tubes	tube	NOUN
ddj-47	241	52	and	and	CCONJ
ddj-47	241	53	plugs	plug	NOUN
ddj-47	241	54	giving	give	VERB
ddj-47	241	55	rise	rise	NOUN
ddj-47	241	56	to	to	ADP
ddj-47	241	57	a	a	DET
ddj-47	241	58	directed	direct	VERB
ddj-47	241	59	attention	attention	NOUN
ddj-47	241	60	.	.	PUNCT
ddj-47	242	1	4	4	X
ddj-47	242	2	.	.	X
ddj-47	242	3	this	this	DET
ddj-47	242	4	hypothesis	hypothesis	NOUN
ddj-47	242	5	makes	make	VERB
ddj-47	242	6	the	the	DET
ddj-47	242	7	model	model	NOUN
ddj-47	242	8	rather	rather	ADV
ddj-47	242	9	predictive	predictive	ADJ
ddj-47	242	10	.	.	PUNCT
ddj-47	243	1	for	for	ADP
ddj-47	243	2	instance	instance	NOUN
ddj-47	243	3	,	,	PUNCT
ddj-47	243	4	n−h	n−h	PROPN
ddj-47	243	5	,	,	PUNCT
ddj-47	243	6	nh2	nh2	PROPN
ddj-47	243	7	,	,	PUNCT
ddj-47	243	8	o−h	o−h	NOUN
ddj-47	243	9	and	and	CCONJ
ddj-47	243	10	much	much	ADV
ddj-47	243	11	less	less	ADV
ddj-47	243	12	often	often	ADV
ddj-47	243	13	c−h	c−h	PROPN
ddj-47	244	1	and	and	CCONJ
ddj-47	244	2	s−h	s−h	PROPN
ddj-47	244	3	are	be	AUX
ddj-47	244	4	the	the	DET
ddj-47	244	5	basic	basic	ADJ
ddj-47	244	6	donors	donor	NOUN
ddj-47	244	7	in	in	ADP
ddj-47	244	8	the	the	DET
ddj-47	244	9	case	case	NOUN
ddj-47	244	10	of	of	ADP
ddj-47	244	11	proteins	protein	NOUN
ddj-47	244	12	whereas	whereas	SCONJ
ddj-47	244	13	o	o	PROPN
ddj-47	244	14	=	=	NOUN
ddj-47	244	15	,	,	PUNCT
ddj-47	244	16	−o−	−o−	NOUN
ddj-47	244	17	,	,	PUNCT
ddj-47	244	18	−n	−n	NOUN
ddj-47	244	19	=	=	SYM
ddj-47	244	20	s−s	s−s	PROPN
ddj-47	244	21	,	,	PUNCT
ddj-47	244	22	−s−	−s−	NOUN
ddj-47	244	23	and	and	CCONJ
ddj-47	244	24	aromatic	aromatic	ADJ
ddj-47	244	25	rings	ring	NOUN
ddj-47	244	26	are	be	AUX
ddj-47	244	27	the	the	DET
ddj-47	244	28	basic	basic	ADJ
ddj-47	244	29	acceptors	acceptor	NOUN
ddj-47	244	30	.	.	PUNCT
ddj-47	245	1	reconnection	reconnection	NOUN
ddj-47	245	2	process	process	NOUN
ddj-47	245	3	should	should	AUX
ddj-47	245	4	be	be	AUX
ddj-47	245	5	involved	involve	VERB
ddj-47	245	6	with	with	ADP
ddj-47	245	7	the	the	DET
ddj-47	245	8	dynamics	dynamic	NOUN
ddj-47	245	9	of	of	ADP
ddj-47	245	10	ordinary	ordinary	ADJ
ddj-47	245	11	hydrogen	hydrogen	NOUN
ddj-47	245	12	bonding	bonding	NOUN
ddj-47	245	13	.	.	PUNCT
ddj-47	246	1	reconnection	reconnection	NOUN
ddj-47	246	2	process	process	NOUN
ddj-47	246	3	implies	imply	VERB
ddj-47	246	4	inheritance	inheritance	NOUN
ddj-47	246	5	of	of	ADP
ddj-47	246	6	the	the	DET
ddj-47	246	7	flux	flux	NOUN
ddj-47	246	8	tube	tube	NOUN
ddj-47	246	9	color	color	NOUN
ddj-47	246	10	and	and	CCONJ
ddj-47	246	11	means	mean	VERB
ddj-47	246	12	a	a	DET
ddj-47	246	13	realization	realization	NOUN
ddj-47	246	14	of	of	ADP
ddj-47	246	15	the	the	DET
ddj-47	246	16	symbol	symbol	NOUN
ddj-47	246	17	based	base	VERB
ddj-47	246	18	dynamics	dynamic	NOUN
ddj-47	246	19	.	.	PUNCT
ddj-47	247	1	it	it	PRON
ddj-47	247	2	turns	turn	VERB
ddj-47	247	3	out	out	ADP
ddj-47	247	4	that	that	SCONJ
ddj-47	247	5	this	this	DET
ddj-47	247	6	hypothesis	hypothesis	NOUN
ddj-47	247	7	leads	lead	VERB
ddj-47	247	8	to	to	ADP
ddj-47	247	9	a	a	DET
ddj-47	247	10	model	model	NOUN
ddj-47	247	11	explaining	explain	VERB
ddj-47	247	12	basic	basic	ADJ
ddj-47	247	13	qualitative	qualitative	ADJ
ddj-47	247	14	facts	fact	NOUN
ddj-47	247	15	about	about	ADP
ddj-47	247	16	protein	protein	NOUN
ddj-47	247	17	folding	folding	NOUN
ddj-47	247	18	.	.	PUNCT
ddj-47	248	1	2.4	2.4	NUM
ddj-47	248	2	flux	flux	NOUN
ddj-47	248	3	tubes	tube	NOUN
ddj-47	248	4	and	and	CCONJ
ddj-47	248	5	dna	dna	NOUN
ddj-47	248	6	the	the	DET
ddj-47	248	7	model	model	NOUN
ddj-47	248	8	of	of	ADP
ddj-47	248	9	dna	dna	PROPN
ddj-47	248	10	as	as	ADP
ddj-47	248	11	topological	topological	ADJ
ddj-47	248	12	quantum	quantum	ADJ
ddj-47	248	13	computer	computer	NOUN
ddj-47	248	14	gives	give	VERB
ddj-47	248	15	useful	useful	ADJ
ddj-47	248	16	guide	guide	NOUN
ddj-47	248	17	lines	line	NOUN
ddj-47	248	18	in	in	ADP
ddj-47	248	19	the	the	DET
ddj-47	248	20	attempt	attempt	NOUN
ddj-47	248	21	to	to	PART
ddj-47	248	22	form	form	VERB
ddj-47	248	23	a	a	DET
ddj-47	248	24	vision	vision	NOUN
ddj-47	248	25	about	about	ADP
ddj-47	248	26	flux	flux	NOUN
ddj-47	248	27	tubes	tube	NOUN
ddj-47	248	28	.	.	PUNCT
ddj-47	249	1	it	it	PRON
ddj-47	249	2	was	be	AUX
ddj-47	249	3	assumed	assume	VERB
ddj-47	249	4	that	that	SCONJ
ddj-47	249	5	braid	braid	ADJ
ddj-47	249	6	strands	strand	NOUN
ddj-47	249	7	defined	define	VERB
ddj-47	249	8	by	by	ADP
ddj-47	249	9	”	"	PUNCT
ddj-47	249	10	wormhole	wormhole	NOUN
ddj-47	249	11	magnetic	magnetic	ADJ
ddj-47	249	12	”	"	PUNCT
ddj-47	249	13	flux	flux	NOUN
ddj-47	249	14	tubes	tube	NOUN
ddj-47	249	15	join	join	VERB
ddj-47	249	16	nucleotides	nucleotide	NOUN
ddj-47	249	17	to	to	ADP
ddj-47	249	18	lipids	lipids	VERB
ddj-47	249	19	and	and	CCONJ
ddj-47	249	20	can	can	AUX
ddj-47	249	21	continue	continue	VERB
ddj-47	249	22	through	through	ADP
ddj-47	249	23	the	the	DET
ddj-47	249	24	nuclear	nuclear	ADJ
ddj-47	249	25	or	or	CCONJ
ddj-47	249	26	cell	cell	NOUN
ddj-47	249	27	membrane	membrane	NOUN
ddj-47	249	28	but	but	CCONJ
ddj-47	249	29	are	be	AUX
ddj-47	249	30	split	split	VERB
ddj-47	249	31	during	during	ADP
ddj-47	249	32	tqc	tqc	PROPN
ddj-47	249	33	.	.	PUNCT
ddj-47	250	1	the	the	DET
ddj-47	250	2	hydrophilic	hydrophilic	ADJ
ddj-47	250	3	ends	end	NOUN
ddj-47	250	4	of	of	ADP
ddj-47	250	5	lipids	lipid	NOUN
ddj-47	250	6	attach	attach	NOUN
ddj-47	250	7	to	to	PART
ddj-47	250	8	water	water	NOUN
ddj-47	250	9	molecules	molecule	NOUN
ddj-47	250	10	and	and	CCONJ
ddj-47	250	11	self	self	NOUN
ddj-47	250	12	-	-	PUNCT
ddj-47	250	13	organization	organization	NOUN
ddj-47	250	14	patterns	pattern	NOUN
ddj-47	250	15	for	for	ADP
ddj-47	250	16	the	the	DET
ddj-47	250	17	water	water	NOUN
ddj-47	250	18	flow	flow	NOUN
ddj-47	250	19	in	in	ADP
ddj-47	250	20	gel	gel	NOUN
ddj-47	250	21	phase	phase	NOUN
ddj-47	250	22	induce	induce	VERB
ddj-47	250	23	a	a	DET
ddj-47	250	24	2	2	NUM
ddj-47	250	25	-	-	PUNCT
ddj-47	250	26	d	d	NOUN
ddj-47	250	27	flow	flow	NOUN
ddj-47	250	28	in	in	ADP
ddj-47	250	29	the	the	DET
ddj-47	250	30	lipid	lipid	NOUN
ddj-47	250	31	layer	layer	NOUN
ddj-47	250	32	which	which	PRON
ddj-47	250	33	is	be	AUX
ddj-47	250	34	liquid	liquid	ADJ
ddj-47	250	35	crystal	crystal	NOUN
ddj-47	250	36	defining	define	VERB
ddj-47	250	37	tqc	tqc	ADJ
ddj-47	250	38	programs	program	NOUN
ddj-47	250	39	at	at	ADP
ddj-47	250	40	issn	issn	PROPN
ddj-47	250	41	:	:	PUNCT
ddj-47	250	42	2159	2159	NUM
ddj-47	250	43	-	-	SYM
ddj-47	250	44	0465	0465	NUM
ddj-47	250	45	dna	dna	PROPN
ddj-47	250	46	decipher	decipher	PROPN
ddj-47	250	47	journal	journal	PROPN
ddj-47	250	48	june	june	PROPN
ddj-47	250	49	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	250	50	published	publish	VERB
ddj-47	250	51	by	by	ADP
ddj-47	250	52	quantumdream	quantumdream	PROPN
ddj-47	250	53	,	,	PUNCT
ddj-47	250	54	inc	inc	PROPN
ddj-47	250	55	.	.	PROPN
ddj-47	250	56	dna	dna	PROPN
ddj-47	250	57	decipher	decipher	PROPN
ddj-47	250	58	journal	journal	NOUN
ddj-47	250	59	|	|	ADV
ddj-47	250	60	may	may	AUX
ddj-47	250	61	2013	2013	NUM
ddj-47	250	62	|	|	ADV
ddj-47	250	63	volume	volume	NOUN
ddj-47	250	64	3	3	NUM
ddj-47	250	65	|	|	NOUN
ddj-47	250	66	issue	issue	VERB
ddj-47	250	67	1	1	NUM
ddj-47	250	68	|	|	ADV
ddj-47	250	69	pp	pp	ADJ
ddj-47	250	70	.	.	PUNCT
ddj-47	251	1	58	58	NUM
ddj-47	251	2	-	-	SYM
ddj-47	251	3	88	88	NUM
ddj-47	251	4	66	66	NUM
ddj-47	251	5	pitkänen	pitkänen	NOUN
ddj-47	251	6	,	,	PUNCT
ddj-47	251	7	m.	m.	NOUN
ddj-47	251	8	,	,	PUNCT
ddj-47	251	9	a	a	DET
ddj-47	251	10	model	model	NOUN
ddj-47	251	11	for	for	ADP
ddj-47	251	12	protein	protein	NOUN
ddj-47	251	13	folding	folding	NOUN
ddj-47	251	14	and	and	CCONJ
ddj-47	251	15	biocatalysis	biocatalysis	NOUN
ddj-47	251	16	the	the	DET
ddj-47	251	17	classical	classical	ADJ
ddj-47	251	18	level	level	NOUN
ddj-47	251	19	as	as	ADP
ddj-47	251	20	braidings	braiding	NOUN
ddj-47	251	21	.	.	PUNCT
ddj-47	252	1	the	the	DET
ddj-47	252	2	flow	flow	NOUN
ddj-47	252	3	indeed	indeed	ADV
ddj-47	252	4	induces	induce	VERB
ddj-47	252	5	braiding	braid	VERB
ddj-47	252	6	if	if	SCONJ
ddj-47	252	7	one	one	PRON
ddj-47	252	8	assumes	assume	VERB
ddj-47	252	9	that	that	SCONJ
ddj-47	252	10	during	during	ADP
ddj-47	252	11	topological	topological	ADJ
ddj-47	252	12	computation	computation	NOUN
ddj-47	252	13	the	the	DET
ddj-47	252	14	connection	connection	NOUN
ddj-47	252	15	through	through	ADP
ddj-47	252	16	the	the	DET
ddj-47	252	17	cell	cell	NOUN
ddj-47	252	18	membrane	membrane	NOUN
ddj-47	252	19	is	be	AUX
ddj-47	252	20	split	split	VERB
ddj-47	252	21	and	and	CCONJ
ddj-47	252	22	reconnected	reconnecte	VERB
ddj-47	252	23	after	after	ADP
ddj-47	252	24	the	the	DET
ddj-47	252	25	halting	halting	NOUN
ddj-47	252	26	of	of	ADP
ddj-47	252	27	tqc	tqc	PROPN
ddj-47	252	28	.	.	PUNCT
ddj-47	253	1	the	the	DET
ddj-47	253	2	challenge	challenge	NOUN
ddj-47	253	3	is	be	AUX
ddj-47	253	4	to	to	PART
ddj-47	253	5	understand	understand	VERB
ddj-47	253	6	microscopically	microscopically	ADV
ddj-47	253	7	how	how	SCONJ
ddj-47	253	8	the	the	DET
ddj-47	253	9	flux	flux	NOUN
ddj-47	253	10	tube	tube	NOUN
ddj-47	253	11	joins	join	VERB
ddj-47	253	12	dna	dna	PROPN
ddj-47	253	13	nucleotide	nucleotide	NOUN
ddj-47	253	14	to	to	ADP
ddj-47	253	15	the	the	DET
ddj-47	253	16	phospholipid	phospholipid	NOUN
ddj-47	253	17	[	[	X
ddj-47	253	18	9	9	NUM
ddj-47	253	19	]	]	PUNCT
ddj-47	253	20	.	.	PUNCT
ddj-47	254	1	certainly	certainly	ADV
ddj-47	254	2	the	the	DET
ddj-47	254	3	points	point	NOUN
ddj-47	254	4	at	at	ADP
ddj-47	254	5	which	which	PRON
ddj-47	254	6	the	the	DET
ddj-47	254	7	flux	flux	NOUN
ddj-47	254	8	tubes	tube	NOUN
ddj-47	254	9	attach	attach	VERB
ddj-47	254	10	should	should	AUX
ddj-47	254	11	be	be	AUX
ddj-47	254	12	completely	completely	ADV
ddj-47	254	13	standard	standard	ADJ
ddj-47	254	14	plugs	plug	NOUN
ddj-47	254	15	and	and	CCONJ
ddj-47	254	16	the	the	DET
ddj-47	254	17	formation	formation	NOUN
ddj-47	254	18	of	of	ADP
ddj-47	254	19	polypeptide	polypeptide	ADJ
ddj-47	254	20	bonds	bond	NOUN
ddj-47	254	21	is	be	AUX
ddj-47	254	22	an	an	DET
ddj-47	254	23	excellent	excellent	ADJ
ddj-47	254	24	guide	guide	NOUN
ddj-47	254	25	line	line	NOUN
ddj-47	254	26	here	here	ADV
ddj-47	254	27	.	.	PUNCT
ddj-47	255	1	recall	recall	VERB
ddj-47	255	2	that	that	DET
ddj-47	255	3	phospholipid	phospholipid	NOUN
ddj-47	255	4	,	,	PUNCT
ddj-47	255	5	the	the	DET
ddj-47	255	6	tqc	tqc	ADJ
ddj-47	255	7	dancer	dancer	NOUN
ddj-47	255	8	,	,	PUNCT
ddj-47	255	9	has	have	VERB
ddj-47	255	10	two	two	NUM
ddj-47	255	11	hydrophobic	hydrophobic	NOUN
ddj-47	255	12	legs	leg	NOUN
ddj-47	255	13	and	and	CCONJ
ddj-47	255	14	head	head	NOUN
ddj-47	255	15	.	.	PUNCT
ddj-47	256	1	each	each	DET
ddj-47	256	2	leg	leg	NOUN
ddj-47	256	3	has	have	VERB
ddj-47	256	4	at	at	ADP
ddj-47	256	5	the	the	DET
ddj-47	256	6	hydrophilic	hydrophilic	ADJ
ddj-47	256	7	end	end	NOUN
ddj-47	256	8	o	o	NOUN
ddj-47	257	1	=	=	SYM
ddj-47	257	2	c	c	NOUN
ddj-47	257	3	-	-	PUNCT
ddj-47	257	4	o	o	NOUN
ddj-47	257	5	-	-	NOUN
ddj-47	257	6	c	c	NOUN
ddj-47	257	7	part	part	NOUN
ddj-47	257	8	joining	join	VERB
ddj-47	257	9	it	it	PRON
ddj-47	257	10	to	to	ADP
ddj-47	257	11	glyceride	glyceride	NOUN
ddj-47	257	12	connected	connect	VERB
ddj-47	257	13	to	to	ADP
ddj-47	257	14	monophosphate	monophosphate	NOUN
ddj-47	257	15	group	group	NOUN
ddj-47	257	16	in	in	ADP
ddj-47	257	17	turn	turn	NOUN
ddj-47	257	18	connected	connect	VERB
ddj-47	257	19	to	to	ADP
ddj-47	257	20	a	a	DET
ddj-47	257	21	hydrophilic	hydrophilic	ADJ
ddj-47	257	22	residue	residue	NOUN
ddj-47	257	23	r.	r.	NOUN
ddj-47	257	24	the	the	DET
ddj-47	257	25	most	most	ADV
ddj-47	257	26	often	often	ADV
ddj-47	257	27	appearing	appear	VERB
ddj-47	257	28	residues	residue	NOUN
ddj-47	257	29	are	be	AUX
ddj-47	257	30	serine	serine	NOUN
ddj-47	257	31	,	,	PUNCT
ddj-47	257	32	inositol	inositol	NOUN
ddj-47	257	33	,	,	PUNCT
ddj-47	257	34	ethanolamine	ethanolamine	NOUN
ddj-47	257	35	,	,	PUNCT
ddj-47	257	36	and	and	CCONJ
ddj-47	257	37	choline	choline	NOUN
ddj-47	257	38	.	.	PUNCT
ddj-47	258	1	only	only	ADV
ddj-47	258	2	three	three	NUM
ddj-47	258	3	of	of	ADP
ddj-47	258	4	these	these	PRON
ddj-47	258	5	appear	appear	VERB
ddj-47	258	6	in	in	ADP
ddj-47	258	7	large	large	ADJ
ddj-47	258	8	quantities	quantity	NOUN
ddj-47	258	9	and	and	CCONJ
ddj-47	258	10	there	there	PRON
ddj-47	258	11	is	be	VERB
ddj-47	258	12	asymmetry	asymmetry	NOUN
ddj-47	258	13	between	between	ADP
ddj-47	258	14	cell	cell	NOUN
ddj-47	258	15	exterior	exterior	ADJ
ddj-47	258	16	and	and	CCONJ
ddj-47	258	17	interior	interior	NOUN
ddj-47	258	18	.	.	PUNCT
ddj-47	259	1	let	let	VERB
ddj-47	259	2	us	we	PRON
ddj-47	259	3	denote	denote	VERB
ddj-47	259	4	by	by	ADP
ddj-47	259	5	=	=	PROPN
ddj-47	259	6	o1	o1	PROPN
ddj-47	259	7	and	and	CCONJ
ddj-47	259	8	=	=	PROPN
ddj-47	259	9	o2	o2	VERB
ddj-47	259	10	the	the	DET
ddj-47	259	11	two	two	NUM
ddj-47	259	12	oxygens	oxygen	NOUN
ddj-47	259	13	(	(	PUNCT
ddj-47	259	14	maybe	maybe	ADV
ddj-47	259	15	analogs	analog	NOUN
ddj-47	259	16	of	of	ADP
ddj-47	259	17	right	right	ADJ
ddj-47	259	18	and	and	CCONJ
ddj-47	259	19	left	left	ADJ
ddj-47	259	20	hemispheres	hemisphere	NOUN
ddj-47	259	21	!	!	PUNCT
ddj-47	259	22	)	)	PUNCT
ddj-47	260	1	in	in	ADP
ddj-47	260	2	question	question	NOUN
ddj-47	260	3	.	.	PUNCT
ddj-47	261	1	the	the	DET
ddj-47	261	2	proposal	proposal	NOUN
ddj-47	261	3	is	be	AUX
ddj-47	261	4	that	that	SCONJ
ddj-47	261	5	dna	dna	PROPN
ddj-47	261	6	nucleotide	nucleotide	NOUN
ddj-47	261	7	and	and	CCONJ
ddj-47	261	8	=	=	SYM
ddj-47	261	9	o1	o1	NOUN
ddj-47	261	10	are	be	AUX
ddj-47	261	11	connected	connect	VERB
ddj-47	261	12	by	by	ADP
ddj-47	261	13	a	a	DET
ddj-47	261	14	flux	flux	NOUN
ddj-47	261	15	tube	tube	NOUN
ddj-47	261	16	:	:	PUNCT
ddj-47	261	17	the	the	DET
ddj-47	261	18	asymmetry	asymmetry	NOUN
ddj-47	261	19	between	between	ADP
ddj-47	261	20	right	right	ADV
ddj-47	261	21	and	and	CCONJ
ddj-47	261	22	left	left	ADJ
ddj-47	261	23	lipid	lipid	NOUN
ddj-47	261	24	legs	leg	NOUN
ddj-47	261	25	should	should	AUX
ddj-47	261	26	determine	determine	VERB
ddj-47	261	27	which	which	PRON
ddj-47	261	28	of	of	ADP
ddj-47	261	29	the	the	DET
ddj-47	261	30	legs	leg	NOUN
ddj-47	261	31	is	be	AUX
ddj-47	261	32	”	"	PUNCT
ddj-47	261	33	left	leave	VERB
ddj-47	261	34	leg	leg	NOUN
ddj-47	261	35	”	"	PUNCT
ddj-47	261	36	and	and	CCONJ
ddj-47	261	37	which	which	DET
ddj-47	261	38	o	o	X
ddj-47	261	39	=	=	PUNCT
ddj-47	261	40	is	be	AUX
ddj-47	261	41	the	the	DET
ddj-47	261	42	”	"	PUNCT
ddj-47	261	43	left	left	ADJ
ddj-47	261	44	brain	brain	NOUN
ddj-47	261	45	hemisphere	hemisphere	ADV
ddj-47	261	46	”	"	PUNCT
ddj-47	261	47	.	.	PUNCT
ddj-47	262	1	=	=	X
ddj-47	262	2	o2	o2	PROPN
ddj-47	262	3	,	,	PUNCT
ddj-47	262	4	the	the	DET
ddj-47	262	5	”	"	PUNCT
ddj-47	262	6	holistic	holistic	ADJ
ddj-47	262	7	right	right	ADJ
ddj-47	262	8	brain	brain	NOUN
ddj-47	262	9	hemisphere	hemisphere	ADV
ddj-47	262	10	”	"	PUNCT
ddj-47	262	11	,	,	PUNCT
ddj-47	262	12	connects	connect	VERB
ddj-47	262	13	in	in	ADP
ddj-47	262	14	turn	turn	NOUN
ddj-47	262	15	to	to	ADP
ddj-47	262	16	the	the	DET
ddj-47	262	17	flux	flux	NOUN
ddj-47	262	18	tube	tube	NOUN
ddj-47	262	19	coming	come	VERB
ddj-47	262	20	from	from	ADP
ddj-47	262	21	the	the	DET
ddj-47	262	22	other	other	ADJ
ddj-47	262	23	symmetrically	symmetrically	ADV
ddj-47	262	24	situated	situate	VERB
ddj-47	262	25	=	=	SYM
ddj-47	262	26	o2	o2	PROPN
ddj-47	262	27	at	at	ADP
ddj-47	262	28	the	the	DET
ddj-47	262	29	outer	outer	ADJ
ddj-47	262	30	surface	surface	NOUN
ddj-47	262	31	of	of	ADP
ddj-47	262	32	the	the	DET
ddj-47	262	33	second	second	ADJ
ddj-47	262	34	lipid	lipid	NOUN
ddj-47	262	35	layer	layer	NOUN
ddj-47	262	36	.	.	PUNCT
ddj-47	263	1	besides	besides	SCONJ
ddj-47	263	2	this	this	DET
ddj-47	263	3	=	=	SYM
ddj-47	263	4	o1	o1	PROPN
ddj-47	263	5	and	and	CCONJ
ddj-47	263	6	=	=	PROPN
ddj-47	263	7	o2	o2	PROPN
ddj-47	263	8	are	be	AUX
ddj-47	263	9	connected	connect	VERB
ddj-47	263	10	by	by	ADP
ddj-47	263	11	a	a	DET
ddj-47	263	12	flux	flux	NOUN
ddj-47	263	13	tube	tube	NOUN
ddj-47	263	14	serving	serve	VERB
ddj-47	263	15	as	as	ADP
ddj-47	263	16	switch	switch	NOUN
ddj-47	263	17	on	on	ADP
ddj-47	263	18	both	both	DET
ddj-47	263	19	sides	side	NOUN
ddj-47	263	20	of	of	ADP
ddj-47	263	21	the	the	DET
ddj-47	263	22	membrane	membrane	NOUN
ddj-47	263	23	.	.	PUNCT
ddj-47	264	1	during	during	ADP
ddj-47	264	2	tqc	tqc	PROPN
ddj-47	264	3	the	the	DET
ddj-47	264	4	short	short	ADJ
ddj-47	264	5	o	o	NOUN
ddj-47	264	6	=	=	SYM
ddj-47	264	7	−o	−o	ADJ
ddj-47	264	8	=	=	SYM
ddj-47	264	9	flux	flux	NOUN
ddj-47	264	10	tube	tube	NOUN
ddj-47	264	11	would	would	AUX
ddj-47	264	12	experience	experience	VERB
ddj-47	264	13	reconnection	reconnection	NOUN
ddj-47	264	14	with	with	ADP
ddj-47	264	15	a	a	DET
ddj-47	264	16	flux	flux	NOUN
ddj-47	264	17	tube	tube	NOUN
ddj-47	264	18	acting	act	VERB
ddj-47	264	19	as	as	ADP
ddj-47	264	20	hydrogen	hydrogen	NOUN
ddj-47	264	21	bond	bond	NOUN
ddj-47	264	22	between	between	ADP
ddj-47	264	23	water	water	NOUN
ddj-47	264	24	molecules	molecule	NOUN
ddj-47	264	25	so	so	SCONJ
ddj-47	264	26	that	that	SCONJ
ddj-47	264	27	the	the	DET
ddj-47	264	28	connection	connection	NOUN
ddj-47	264	29	is	be	AUX
ddj-47	264	30	split	split	VERB
ddj-47	264	31	and	and	CCONJ
ddj-47	264	32	o	o	X
ddj-47	265	1	=	=	NOUN
ddj-47	265	2	:	:	PUNCT
ddj-47	265	3	s	s	PART
ddj-47	265	4	form	form	NOUN
ddj-47	265	5	hydrogen	hydrogen	NOUN
ddj-47	265	6	bonds	bond	NOUN
ddj-47	265	7	.	.	PUNCT
ddj-47	266	1	the	the	DET
ddj-47	266	2	reversal	reversal	NOUN
ddj-47	266	3	of	of	ADP
ddj-47	266	4	this	this	DET
ddj-47	266	5	reconnection	reconnection	NOUN
ddj-47	266	6	creates	create	VERB
ddj-47	266	7	the	the	DET
ddj-47	266	8	connection	connection	NOUN
ddj-47	266	9	again	again	ADV
ddj-47	266	10	and	and	CCONJ
ddj-47	266	11	halts	halt	VERB
ddj-47	266	12	the	the	DET
ddj-47	266	13	computation	computation	NOUN
ddj-47	266	14	.	.	PUNCT
ddj-47	267	1	the	the	DET
ddj-47	267	2	lipid	lipid	NOUN
ddj-47	267	3	residue	residue	NOUN
ddj-47	267	4	r	r	NOUN
ddj-47	267	5	couples	couple	NOUN
ddj-47	267	6	with	with	ADP
ddj-47	267	7	the	the	DET
ddj-47	267	8	flow	flow	NOUN
ddj-47	267	9	of	of	ADP
ddj-47	267	10	the	the	DET
ddj-47	267	11	liquid	liquid	NOUN
ddj-47	267	12	in	in	ADP
ddj-47	267	13	gel	gel	NOUN
ddj-47	267	14	phase	phase	NOUN
ddj-47	267	15	.	.	PUNCT
ddj-47	268	1	since	since	SCONJ
ddj-47	268	2	=	=	NOUN
ddj-47	268	3	o	o	NOUN
ddj-47	268	4	is	be	AUX
ddj-47	268	5	in	in	ADP
ddj-47	268	6	question	question	NOUN
ddj-47	268	7	the	the	DET
ddj-47	268	8	quark	quark	NOUN
ddj-47	268	9	or	or	CCONJ
ddj-47	268	10	antiquark	antiquark	NOUN
ddj-47	268	11	at	at	ADP
ddj-47	268	12	the	the	DET
ddj-47	268	13	end	end	NOUN
ddj-47	268	14	can	can	AUX
ddj-47	268	15	correspond	correspond	VERB
ddj-47	268	16	to	to	ADP
ddj-47	268	17	the	the	DET
ddj-47	268	18	dna	dna	PROPN
ddj-47	268	19	nucleotide	nucleotide	NOUN
ddj-47	268	20	in	in	ADP
ddj-47	268	21	question	question	NOUN
ddj-47	268	22	.	.	PUNCT
ddj-47	269	1	the	the	DET
ddj-47	269	2	necessary	necessary	ADJ
ddj-47	269	3	complete	complete	ADJ
ddj-47	269	4	correlation	correlation	NOUN
ddj-47	269	5	between	between	ADP
ddj-47	269	6	quark	quark	NOUN
ddj-47	269	7	and	and	CCONJ
ddj-47	269	8	antiquark	antiquark	PROPN
ddj-47	269	9	charges	charge	NOUN
ddj-47	269	10	at	at	ADP
ddj-47	269	11	the	the	DET
ddj-47	269	12	ends	end	NOUN
ddj-47	269	13	of	of	ADP
ddj-47	269	14	flux	flux	NOUN
ddj-47	269	15	tubes	tube	NOUN
ddj-47	269	16	associated	associate	VERB
ddj-47	269	17	with	with	ADP
ddj-47	269	18	=	=	NOUN
ddj-47	269	19	o1	o1	PROPN
ddj-47	269	20	and	and	CCONJ
ddj-47	269	21	=	=	PROPN
ddj-47	269	22	o2	o2	PROPN
ddj-47	269	23	can	can	AUX
ddj-47	269	24	be	be	AUX
ddj-47	269	25	understood	understand	VERB
ddj-47	269	26	as	as	ADP
ddj-47	269	27	being	be	AUX
ddj-47	269	28	due	due	ADJ
ddj-47	269	29	to	to	ADP
ddj-47	269	30	the	the	DET
ddj-47	269	31	minimization	minimization	NOUN
ddj-47	269	32	of	of	ADP
ddj-47	269	33	coulomb	coulomb	NOUN
ddj-47	269	34	interaction	interaction	NOUN
ddj-47	269	35	energy	energy	NOUN
ddj-47	269	36	.	.	PUNCT
ddj-47	270	1	if	if	SCONJ
ddj-47	270	2	one	one	PRON
ddj-47	270	3	is	be	AUX
ddj-47	270	4	ready	ready	ADJ
ddj-47	270	5	to	to	PART
ddj-47	270	6	accept	accept	VERB
ddj-47	270	7	magnetic	magnetic	ADJ
ddj-47	270	8	flux	flux	NOUN
ddj-47	270	9	tubes	tube	NOUN
ddj-47	270	10	between	between	ADP
ddj-47	270	11	all	all	DET
ddj-47	270	12	acceptors	acceptor	NOUN
ddj-47	270	13	then	then	ADV
ddj-47	270	14	the	the	DET
ddj-47	270	15	aromatic	aromatic	ADJ
ddj-47	270	16	rings	ring	NOUN
ddj-47	270	17	of	of	ADP
ddj-47	270	18	nucleotides	nucleotide	NOUN
ddj-47	270	19	known	know	VERB
ddj-47	270	20	to	to	PART
ddj-47	270	21	be	be	AUX
ddj-47	270	22	acceptors	acceptor	NOUN
ddj-47	270	23	could	could	AUX
ddj-47	270	24	be	be	AUX
ddj-47	270	25	connected	connect	VERB
ddj-47	270	26	by	by	ADP
ddj-47	270	27	a	a	DET
ddj-47	270	28	flux	flux	NOUN
ddj-47	270	29	tube	tube	NOUN
ddj-47	270	30	to	to	ADP
ddj-47	270	31	the	the	DET
ddj-47	270	32	o	o	NOUN
ddj-47	270	33	=	=	SYM
ddj-47	270	34	atom	atom	NOUN
ddj-47	270	35	of	of	ADP
ddj-47	270	36	the	the	DET
ddj-47	270	37	lipid	lipid	NOUN
ddj-47	270	38	or	or	CCONJ
ddj-47	270	39	to	to	ADP
ddj-47	270	40	some	some	DET
ddj-47	270	41	intermediate	intermediate	ADJ
ddj-47	270	42	o	o	NOUN
ddj-47	270	43	=	=	SYM
ddj-47	270	44	atom	atom	NOUN
ddj-47	270	45	.	.	PUNCT
ddj-47	271	1	the	the	DET
ddj-47	271	2	phosphate	phosphate	ADJ
ddj-47	271	3	groups	group	NOUN
ddj-47	271	4	associated	associate	VERB
ddj-47	271	5	with	with	ADP
ddj-47	271	6	nucleotides	nucleotide	NOUN
ddj-47	271	7	of	of	ADP
ddj-47	271	8	dna	dna	NOUN
ddj-47	271	9	strand	strand	NOUN
ddj-47	271	10	contain	contain	VERB
ddj-47	271	11	also	also	ADV
ddj-47	271	12	=	=	SYM
ddj-47	272	1	o	o	NOUN
ddj-47	272	2	,	,	PUNCT
ddj-47	272	3	which	which	PRON
ddj-47	272	4	could	could	AUX
ddj-47	272	5	act	act	VERB
ddj-47	272	6	as	as	ADP
ddj-47	272	7	a	a	DET
ddj-47	272	8	plug	plug	NOUN
ddj-47	272	9	to	to	PART
ddj-47	272	10	which	which	PRON
ddj-47	272	11	the	the	DET
ddj-47	272	12	flux	flux	NOUN
ddj-47	272	13	tube	tube	NOUN
ddj-47	272	14	from	from	ADP
ddj-47	272	15	the	the	DET
ddj-47	272	16	nucleotide	nucleotide	NOUN
ddj-47	272	17	is	be	AUX
ddj-47	272	18	attached	attach	VERB
ddj-47	272	19	.	.	PUNCT
ddj-47	273	1	the	the	DET
ddj-47	273	2	detailed	detailed	ADJ
ddj-47	273	3	charge	charge	NOUN
ddj-47	273	4	structure	structure	NOUN
ddj-47	273	5	of	of	ADP
ddj-47	273	6	the	the	DET
ddj-47	273	7	aromatic	aromatic	ADJ
ddj-47	273	8	ring(s	ring(s	NOUN
ddj-47	273	9	)	)	PUNCT
ddj-47	273	10	should	should	AUX
ddj-47	273	11	determine	determine	VERB
ddj-47	273	12	the	the	DET
ddj-47	273	13	quark	quark	ADJ
ddj-47	273	14	-	-	PUNCT
ddj-47	273	15	nucleotide	nucleotide	ADJ
ddj-47	273	16	correspondence	correspondence	NOUN
ddj-47	273	17	.	.	PUNCT
ddj-47	274	1	the	the	DET
ddj-47	274	2	connection	connection	NOUN
ddj-47	274	3	line	line	NOUN
ddj-47	274	4	to	to	ADP
ddj-47	274	5	the	the	DET
ddj-47	274	6	lipid	lipid	NOUN
ddj-47	274	7	could	could	AUX
ddj-47	274	8	involve	involve	VERB
ddj-47	274	9	several	several	ADJ
ddj-47	274	10	intermediate	intermediate	ADJ
ddj-47	274	11	o	o	NOUN
ddj-47	274	12	=	=	PUNCT
ddj-47	274	13	plugs	plug	NOUN
ddj-47	274	14	and	and	CCONJ
ddj-47	274	15	the	the	DET
ddj-47	274	16	first	first	ADJ
ddj-47	274	17	plug	plug	NOUN
ddj-47	274	18	in	in	ADP
ddj-47	274	19	the	the	DET
ddj-47	274	20	series	series	NOUN
ddj-47	274	21	would	would	AUX
ddj-47	274	22	be	be	AUX
ddj-47	274	23	the	the	DET
ddj-47	274	24	o	o	NOUN
ddj-47	274	25	=	=	SYM
ddj-47	274	26	atom	atom	NOUN
ddj-47	274	27	of	of	ADP
ddj-47	274	28	the	the	DET
ddj-47	274	29	monophosphate	monophosphate	NOUN
ddj-47	274	30	of	of	ADP
ddj-47	274	31	the	the	DET
ddj-47	274	32	nucleotide	nucleotide	NOUN
ddj-47	274	33	.	.	PUNCT
ddj-47	275	1	there	there	PRON
ddj-47	275	2	is	be	VERB
ddj-47	275	3	a	a	DET
ddj-47	275	4	strong	strong	ADJ
ddj-47	275	5	temptation	temptation	NOUN
ddj-47	275	6	to	to	PART
ddj-47	275	7	assume	assume	VERB
ddj-47	275	8	that	that	SCONJ
ddj-47	275	9	subset	subset	NOUN
ddj-47	275	10	of	of	ADP
ddj-47	275	11	xyp	xyp	DET
ddj-47	275	12	molecules	molecule	NOUN
ddj-47	275	13	,	,	PUNCT
ddj-47	275	14	x	x	X
ddj-47	275	15	=	=	PUNCT
ddj-47	275	16	a	a	PRON
ddj-47	275	17	,	,	PUNCT
ddj-47	275	18	g	g	PROPN
ddj-47	275	19	,	,	PUNCT
ddj-47	275	20	t	t	PROPN
ddj-47	275	21	,	,	PUNCT
ddj-47	275	22	c	c	X
ddj-47	275	23	,	,	PUNCT
ddj-47	275	24	y	y	PROPN
ddj-47	275	25	=	=	PUNCT
ddj-47	275	26	m	m	PROPN
ddj-47	275	27	,	,	PUNCT
ddj-47	275	28	d	d	PROPN
ddj-47	275	29	,	,	PUNCT
ddj-47	275	30	t	t	PROPN
ddj-47	275	31	act	act	PROPN
ddj-47	275	32	as	as	ADP
ddj-47	275	33	standard	standard	ADJ
ddj-47	275	34	plugs	plug	NOUN
ddj-47	275	35	with	with	ADP
ddj-47	275	36	x	x	PUNCT
ddj-47	275	37	and	and	CCONJ
ddj-47	275	38	phosphates	phosphate	NOUN
ddj-47	275	39	connected	connect	VERB
ddj-47	275	40	by	by	ADP
ddj-47	275	41	flux	flux	NOUN
ddj-47	275	42	tubes	tube	NOUN
ddj-47	275	43	to	to	ADP
ddj-47	275	44	a	a	DET
ddj-47	275	45	string	string	NOUN
ddj-47	275	46	.	.	PUNCT
ddj-47	276	1	this	this	PRON
ddj-47	276	2	would	would	AUX
ddj-47	276	3	make	make	VERB
ddj-47	276	4	possible	possible	ADJ
ddj-47	276	5	to	to	PART
ddj-47	276	6	engineer	engineer	VERB
ddj-47	276	7	braid	braid	ADJ
ddj-47	276	8	strands	strand	NOUN
ddj-47	276	9	from	from	ADP
ddj-47	276	10	standard	standard	ADJ
ddj-47	276	11	pieces	piece	NOUN
ddj-47	276	12	connected	connect	VERB
ddj-47	276	13	by	by	ADP
ddj-47	276	14	standard	standard	ADJ
ddj-47	276	15	plugs	plug	NOUN
ddj-47	276	16	.	.	PUNCT
ddj-47	277	1	dna	dna	PROPN
ddj-47	277	2	nucleotide	nucleotide	PROPN
ddj-47	277	3	xmp	xmp	PROPN
ddj-47	277	4	would	would	AUX
ddj-47	277	5	have	have	VERB
ddj-47	277	6	flux	flux	NOUN
ddj-47	277	7	tube	tube	NOUN
ddj-47	277	8	connection	connection	NOUN
ddj-47	277	9	to	to	ADP
ddj-47	277	10	the	the	DET
ddj-47	277	11	aromatic	aromatic	ADJ
ddj-47	277	12	ring	ring	NOUN
ddj-47	277	13	of	of	ADP
ddj-47	277	14	x	x	PUNCT
ddj-47	277	15	and	and	CCONJ
ddj-47	277	16	the	the	DET
ddj-47	277	17	o	o	NOUN
ddj-47	277	18	=	=	PUNCT
ddj-47	277	19	of	of	ADP
ddj-47	277	20	last	last	ADJ
ddj-47	277	21	p	p	NOUN
ddj-47	277	22	would	would	AUX
ddj-47	277	23	be	be	AUX
ddj-47	277	24	connected	connect	VERB
ddj-47	277	25	to	to	ADP
ddj-47	277	26	next	next	ADJ
ddj-47	277	27	plug	plug	NOUN
ddj-47	277	28	of	of	ADP
ddj-47	277	29	the	the	DET
ddj-47	277	30	communication	communication	NOUN
ddj-47	277	31	line	line	NOUN
ddj-47	277	32	.	.	PUNCT
ddj-47	278	1	if	if	SCONJ
ddj-47	278	2	so	so	ADV
ddj-47	278	3	,	,	PUNCT
ddj-47	278	4	a	a	DET
ddj-47	278	5	close	close	ADJ
ddj-47	278	6	connection	connection	NOUN
ddj-47	278	7	with	with	ADP
ddj-47	278	8	metabolism	metabolism	NOUN
ddj-47	278	9	and	and	CCONJ
ddj-47	278	10	topological	topological	ADJ
ddj-47	278	11	quantum	quantum	ADJ
ddj-47	278	12	computation	computation	NOUN
ddj-47	278	13	would	would	AUX
ddj-47	278	14	emerge	emerge	VERB
ddj-47	278	15	.	.	PUNCT
ddj-47	279	1	phosphorylation	phosphorylation	NOUN
ddj-47	279	2	would	would	AUX
ddj-47	279	3	be	be	AUX
ddj-47	279	4	an	an	DET
ddj-47	279	5	absolutely	absolutely	ADV
ddj-47	279	6	essential	essential	ADJ
ddj-47	279	7	for	for	ADP
ddj-47	279	8	both	both	CCONJ
ddj-47	279	9	metabolism	metabolism	NOUN
ddj-47	279	10	and	and	CCONJ
ddj-47	279	11	buildup	buildup	NOUN
ddj-47	279	12	of	of	ADP
ddj-47	279	13	connection	connection	NOUN
ddj-47	279	14	lines	line	NOUN
ddj-47	279	15	acting	act	VERB
ddj-47	279	16	as	as	ADP
ddj-47	279	17	braid	braid	ADJ
ddj-47	279	18	strands	strand	NOUN
ddj-47	279	19	.	.	PUNCT
ddj-47	280	1	o	o	X
ddj-47	280	2	=	=	SYM
ddj-47	280	3	−o	−o	PROPN
ddj-47	280	4	=	=	SYM
ddj-47	280	5	flux	flux	NOUN
ddj-47	280	6	tubes	tube	NOUN
ddj-47	280	7	could	could	AUX
ddj-47	280	8	also	also	ADV
ddj-47	280	9	act	act	VERB
ddj-47	280	10	as	as	ADP
ddj-47	280	11	switches	switch	NOUN
ddj-47	280	12	inducing	induce	VERB
ddj-47	280	13	a	a	DET
ddj-47	280	14	shortcut	shortcut	NOUN
ddj-47	280	15	of	of	ADP
ddj-47	280	16	the	the	DET
ddj-47	280	17	flux	flux	NOUN
ddj-47	280	18	tube	tube	NOUN
ddj-47	280	19	connection	connection	NOUN
ddj-47	280	20	by	by	ADP
ddj-47	280	21	reconnecting	reconnecte	VERB
ddj-47	280	22	with	with	ADP
ddj-47	280	23	a	a	DET
ddj-47	280	24	hydrogen	hydrogen	NOUN
ddj-47	280	25	bond	bond	NOUN
ddj-47	280	26	connecting	connect	VERB
ddj-47	280	27	two	two	NUM
ddj-47	280	28	water	water	NOUN
ddj-47	280	29	molecules	molecule	NOUN
ddj-47	280	30	.	.	PUNCT
ddj-47	281	1	this	this	PRON
ddj-47	281	2	is	be	AUX
ddj-47	281	3	an	an	DET
ddj-47	281	4	essential	essential	ADJ
ddj-47	281	5	step	step	NOUN
ddj-47	281	6	in	in	ADP
ddj-47	281	7	the	the	DET
ddj-47	281	8	model	model	NOUN
ddj-47	281	9	for	for	ADP
ddj-47	281	10	how	how	SCONJ
ddj-47	281	11	dna	dna	PROPN
ddj-47	281	12	acts	act	VERB
ddj-47	281	13	as	as	ADP
ddj-47	281	14	topological	topological	ADJ
ddj-47	281	15	quantum	quantum	ADJ
ddj-47	281	16	computer	computer	NOUN
ddj-47	281	17	.	.	PUNCT
ddj-47	282	1	this	this	DET
ddj-47	282	2	picture	picture	NOUN
ddj-47	282	3	would	would	AUX
ddj-47	282	4	fit	fit	VERB
ddj-47	282	5	with	with	ADP
ddj-47	282	6	the	the	DET
ddj-47	282	7	fact	fact	NOUN
ddj-47	282	8	that	that	SCONJ
ddj-47	282	9	xyp	xyp	DET
ddj-47	282	10	molecules	molecule	NOUN
ddj-47	282	11	,	,	PUNCT
ddj-47	282	12	in	in	ADP
ddj-47	282	13	particular	particular	ADJ
ddj-47	282	14	amp	amp	PROPN
ddj-47	282	15	,	,	PUNCT
ddj-47	282	16	adp	adp	PROPN
ddj-47	282	17	,	,	PUNCT
ddj-47	282	18	and	and	CCONJ
ddj-47	282	19	atp	atp	PROPN
ddj-47	282	20	,	,	PUNCT
ddj-47	282	21	appear	appear	VERB
ddj-47	282	22	in	in	ADP
ddj-47	282	23	bio	bio	NOUN
ddj-47	282	24	-	-	NOUN
ddj-47	282	25	molecules	molecule	NOUN
ddj-47	282	26	involved	involve	VERB
ddj-47	282	27	with	with	ADP
ddj-47	282	28	varying	vary	VERB
ddj-47	282	29	functions	function	NOUN
ddj-47	282	30	such	such	ADJ
ddj-47	282	31	as	as	ADP
ddj-47	282	32	signalling	signal	VERB
ddj-47	282	33	,	,	PUNCT
ddj-47	282	34	control	control	NOUN
ddj-47	282	35	,	,	PUNCT
ddj-47	282	36	and	and	CCONJ
ddj-47	282	37	metabolism	metabolism	NOUN
ddj-47	282	38	.	.	PUNCT
ddj-47	283	1	=	=	PUNCT
ddj-47	283	2	o	o	NOUN
ddj-47	283	3	might	might	AUX
ddj-47	283	4	act	act	VERB
ddj-47	283	5	as	as	ADP
ddj-47	283	6	a	a	DET
ddj-47	283	7	universal	universal	ADJ
ddj-47	283	8	plug	plug	NOUN
ddj-47	283	9	to	to	ADP
ddj-47	283	10	which	which	PRON
ddj-47	283	11	flux	flux	NOUN
ddj-47	283	12	tubes	tube	NOUN
ddj-47	283	13	from	from	ADP
ddj-47	283	14	electronegative	electronegative	ADJ
ddj-47	283	15	atoms	atom	NOUN
ddj-47	283	16	of	of	ADP
ddj-47	283	17	information	information	NOUN
ddj-47	283	18	molecules	molecule	NOUN
ddj-47	283	19	can	can	AUX
ddj-47	283	20	attach	attach	VERB
ddj-47	283	21	their	their	PRON
ddj-47	283	22	flux	flux	NOUN
ddj-47	283	23	tubes	tube	NOUN
ddj-47	283	24	.	.	PUNCT
ddj-47	284	1	this	this	PRON
ddj-47	284	2	would	would	AUX
ddj-47	284	3	also	also	ADV
ddj-47	284	4	provide	provide	VERB
ddj-47	284	5	a	a	DET
ddj-47	284	6	concrete	concrete	ADJ
ddj-47	284	7	realization	realization	NOUN
ddj-47	284	8	of	of	ADP
ddj-47	284	9	the	the	DET
ddj-47	284	10	idea	idea	NOUN
ddj-47	284	11	that	that	SCONJ
ddj-47	284	12	information	information	NOUN
ddj-47	284	13	molecules	molecule	NOUN
ddj-47	284	14	(	(	PUNCT
ddj-47	284	15	neurotransmitters	neurotransmitter	NOUN
ddj-47	284	16	,	,	PUNCT
ddj-47	284	17	hormones	hormone	NOUN
ddj-47	284	18	)	)	PUNCT
ddj-47	284	19	are	be	AUX
ddj-47	284	20	analogous	analogous	ADJ
ddj-47	284	21	to	to	ADP
ddj-47	284	22	links	link	NOUN
ddj-47	284	23	in	in	ADP
ddj-47	284	24	internet	internet	NOUN
ddj-47	284	25	[	[	X
ddj-47	284	26	18	18	NUM
ddj-47	284	27	]	]	PUNCT
ddj-47	284	28	:	:	PUNCT
ddj-47	284	29	they	they	PRON
ddj-47	284	30	would	would	AUX
ddj-47	284	31	not	not	PART
ddj-47	284	32	represent	represent	VERB
ddj-47	284	33	the	the	DET
ddj-47	284	34	information	information	NOUN
ddj-47	284	35	but	but	CCONJ
ddj-47	284	36	establish	establish	VERB
ddj-47	284	37	a	a	DET
ddj-47	284	38	communication	communication	NOUN
ddj-47	284	39	channel	channel	NOUN
ddj-47	284	40	.	.	PUNCT
ddj-47	285	1	the	the	DET
ddj-47	285	2	magnetic	magnetic	PROPN
ddj-47	285	3	flux	flux	PROPN
ddj-47	285	4	tube	tube	NOUN
ddj-47	285	5	associated	associate	VERB
ddj-47	285	6	with	with	ADP
ddj-47	285	7	the	the	DET
ddj-47	285	8	information	information	NOUN
ddj-47	285	9	molecule	molecule	NOUN
ddj-47	285	10	would	would	AUX
ddj-47	285	11	connect	connect	VERB
ddj-47	285	12	it	it	PRON
ddj-47	285	13	to	to	ADP
ddj-47	285	14	another	another	DET
ddj-47	285	15	cell	cell	NOUN
ddj-47	285	16	and	and	CCONJ
ddj-47	285	17	by	by	ADP
ddj-47	285	18	the	the	DET
ddj-47	285	19	join	join	NOUN
ddj-47	285	20	to	to	ADP
ddj-47	285	21	=	=	PUNCT
ddj-47	285	22	o	o	NOUN
ddj-47	285	23	plug	plug	NOUN
ddj-47	285	24	having	have	VERB
ddj-47	285	25	flux	flux	NOUN
ddj-47	285	26	tube	tube	NOUN
ddj-47	285	27	to	to	ADP
ddj-47	285	28	another	another	DET
ddj-47	285	29	cell	cell	NOUN
ddj-47	285	30	,	,	PUNCT
ddj-47	285	31	say	say	VERB
ddj-47	285	32	to	to	ADP
ddj-47	285	33	its	its	PRON
ddj-47	285	34	nucleus	nucleus	NOUN
ddj-47	285	35	,	,	PUNCT
ddj-47	285	36	would	would	AUX
ddj-47	285	37	create	create	VERB
ddj-47	285	38	a	a	DET
ddj-47	285	39	communication	communication	NOUN
ddj-47	285	40	or	or	CCONJ
ddj-47	285	41	control	control	NOUN
ddj-47	285	42	channel	channel	PROPN
ddj-47	285	43	.	.	PUNCT
ddj-47	286	1	issn	issn	PROPN
ddj-47	286	2	:	:	PUNCT
ddj-47	286	3	2159	2159	NUM
ddj-47	286	4	-	-	SYM
ddj-47	286	5	0465	0465	NUM
ddj-47	286	6	dna	dna	PROPN
ddj-47	286	7	decipher	decipher	PROPN
ddj-47	286	8	journal	journal	PROPN
ddj-47	286	9	june	june	PROPN
ddj-47	286	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	286	11	published	publish	VERB
ddj-47	286	12	by	by	ADP
ddj-47	286	13	quantumdream	quantumdream	PROPN
ddj-47	286	14	,	,	PUNCT
ddj-47	286	15	inc	inc	PROPN
ddj-47	286	16	.	.	PROPN
ddj-47	286	17	dna	dna	PROPN
ddj-47	286	18	decipher	decipher	PROPN
ddj-47	286	19	journal	journal	NOUN
ddj-47	287	1	|	|	ADV
ddj-47	287	2	may	may	AUX
ddj-47	287	3	2013	2013	NUM
ddj-47	287	4	|	|	ADV
ddj-47	287	5	volume	volume	NOUN
ddj-47	287	6	3	3	NUM
ddj-47	287	7	|	|	NOUN
ddj-47	287	8	issue	issue	VERB
ddj-47	287	9	1	1	NUM
ddj-47	287	10	|	|	ADV
ddj-47	287	11	pp	pp	ADJ
ddj-47	287	12	.	.	PUNCT
ddj-47	288	1	58	58	NUM
ddj-47	288	2	-	-	SYM
ddj-47	288	3	88	88	NUM
ddj-47	288	4	67	67	NUM
ddj-47	288	5	pitkänen	pitkänen	NOUN
ddj-47	288	6	,	,	PUNCT
ddj-47	288	7	m.	m.	NOUN
ddj-47	288	8	,	,	PUNCT
ddj-47	288	9	a	a	DET
ddj-47	288	10	model	model	NOUN
ddj-47	288	11	for	for	ADP
ddj-47	288	12	protein	protein	NOUN
ddj-47	288	13	folding	folding	NOUN
ddj-47	288	14	and	and	CCONJ
ddj-47	288	15	biocatalysis	biocatalysis	NOUN
ddj-47	288	16	2.5	2.5	NUM
ddj-47	288	17	introns	intron	NOUN
ddj-47	288	18	and	and	CCONJ
ddj-47	288	19	dna	dna	NOUN
ddj-47	288	20	-	-	PUNCT
ddj-47	288	21	protein	protein	NOUN
ddj-47	288	22	attachment	attachment	NOUN
ddj-47	288	23	an	an	DET
ddj-47	288	24	example	example	NOUN
ddj-47	288	25	is	be	AUX
ddj-47	288	26	the	the	DET
ddj-47	288	27	situation	situation	NOUN
ddj-47	288	28	in	in	ADP
ddj-47	288	29	which	which	PRON
ddj-47	288	30	protein	protein	NOUN
ddj-47	288	31	acts	act	VERB
ddj-47	288	32	as	as	ADP
ddj-47	288	33	an	an	DET
ddj-47	288	34	enzyme	enzyme	NOUN
ddj-47	288	35	attaching	attach	VERB
ddj-47	288	36	on	on	ADP
ddj-47	288	37	dna	dna	PROPN
ddj-47	288	38	.	.	PUNCT
ddj-47	289	1	suppose	suppose	VERB
ddj-47	289	2	that	that	SCONJ
ddj-47	289	3	this	this	DET
ddj-47	289	4	process	process	NOUN
ddj-47	289	5	effectively	effectively	ADV
ddj-47	289	6	reduces	reduce	VERB
ddj-47	289	7	to	to	ADP
ddj-47	289	8	a	a	DET
ddj-47	289	9	base	base	NOUN
ddj-47	289	10	pairing	pairing	NOUN
ddj-47	289	11	between	between	ADP
ddj-47	289	12	amino	amino	NOUN
ddj-47	289	13	-	-	PUNCT
ddj-47	289	14	acid	acid	NOUN
ddj-47	289	15	and	and	CCONJ
ddj-47	289	16	dna	dna	PROPN
ddj-47	289	17	nucleotide	nucleotide	NOUN
ddj-47	289	18	.	.	PUNCT
ddj-47	290	1	protein	protein	NOUN
ddj-47	290	2	can	can	AUX
ddj-47	290	3	attach	attach	VERB
ddj-47	290	4	to	to	ADP
ddj-47	290	5	any	any	DET
ddj-47	290	6	portion	portion	NOUN
ddj-47	290	7	of	of	ADP
ddj-47	290	8	dna	dna	NOUN
ddj-47	290	9	.	.	PUNCT
ddj-47	291	1	the	the	DET
ddj-47	291	2	simplest	simple	ADJ
ddj-47	291	3	interaction	interaction	NOUN
ddj-47	291	4	is	be	AUX
ddj-47	291	5	the	the	DET
ddj-47	291	6	attachment	attachment	NOUN
ddj-47	291	7	to	to	ADP
ddj-47	291	8	the	the	DET
ddj-47	291	9	gene	gene	NOUN
ddj-47	291	10	coding	code	VERB
ddj-47	291	11	for	for	ADP
ddj-47	291	12	the	the	DET
ddj-47	291	13	amino	amino	NOUN
ddj-47	291	14	-	-	PUNCT
ddj-47	291	15	acid	acid	NOUN
ddj-47	291	16	itself	itself	PRON
ddj-47	291	17	but	but	CCONJ
ddj-47	291	18	much	much	ADV
ddj-47	291	19	more	more	ADV
ddj-47	291	20	general	general	ADJ
ddj-47	291	21	enzymatic	enzymatic	ADJ
ddj-47	291	22	interactions	interaction	NOUN
ddj-47	291	23	are	be	AUX
ddj-47	291	24	possible	possible	ADJ
ddj-47	291	25	.	.	PUNCT
ddj-47	292	1	it	it	PRON
ddj-47	292	2	must	must	AUX
ddj-47	292	3	be	be	AUX
ddj-47	292	4	however	however	ADV
ddj-47	292	5	noticed	notice	VERB
ddj-47	292	6	that	that	SCONJ
ddj-47	292	7	dna	dna	PROPN
ddj-47	292	8	sequence	sequence	NOUN
ddj-47	292	9	coding	code	VERB
ddj-47	292	10	for	for	ADP
ddj-47	292	11	given	give	VERB
ddj-47	292	12	amino	amino	NOUN
ddj-47	292	13	-	-	PUNCT
ddj-47	292	14	acid	acid	NOUN
ddj-47	292	15	sequences	sequence	NOUN
ddj-47	292	16	is	be	AUX
ddj-47	292	17	considerably	considerably	ADV
ddj-47	292	18	longer	long	ADJ
ddj-47	292	19	than	than	ADP
ddj-47	292	20	amino	amino	ADJ
ddj-47	292	21	-	-	PUNCT
ddj-47	292	22	acid	acid	NOUN
ddj-47	292	23	sequence	sequence	NOUN
ddj-47	292	24	:	:	PUNCT
ddj-47	292	25	the	the	DET
ddj-47	292	26	sequence	sequence	NOUN
ddj-47	292	27	coding	code	VERB
ddj-47	292	28	for	for	ADP
ddj-47	292	29	10	10	NUM
ddj-47	292	30	amino	amino	NOUN
ddj-47	292	31	-	-	PUNCT
ddj-47	292	32	acids	acid	NOUN
ddj-47	292	33	is	be	AUX
ddj-47	292	34	about	about	ADV
ddj-47	292	35	10	10	NUM
ddj-47	292	36	nm	nm	ADV
ddj-47	292	37	long	long	ADV
ddj-47	292	38	whereas	whereas	SCONJ
ddj-47	292	39	the	the	DET
ddj-47	292	40	corresponding	corresponding	ADJ
ddj-47	292	41	straight	straight	ADJ
ddj-47	292	42	amino	amino	NOUN
ddj-47	292	43	-	-	PUNCT
ddj-47	292	44	acid	acid	NOUN
ddj-47	292	45	strand	strand	NOUN
ddj-47	292	46	is	be	AUX
ddj-47	292	47	about	about	ADV
ddj-47	292	48	4.7	4.7	NUM
ddj-47	292	49	nm	nm	ADV
ddj-47	292	50	long	long	ADV
ddj-47	292	51	.	.	PUNCT
ddj-47	293	1	it	it	PRON
ddj-47	293	2	is	be	AUX
ddj-47	293	3	known	know	VERB
ddj-47	293	4	that	that	SCONJ
ddj-47	293	5	dna	dna	PROPN
ddj-47	293	6	can	can	AUX
ddj-47	293	7	change	change	VERB
ddj-47	293	8	its	its	PRON
ddj-47	293	9	conformation	conformation	NOUN
ddj-47	293	10	from	from	ADP
ddj-47	293	11	strand	strand	NOUN
ddj-47	293	12	during	during	ADP
ddj-47	293	13	enzyme	enzyme	NOUN
ddj-47	293	14	-	-	PUNCT
ddj-47	293	15	dna	dna	NOUN
ddj-47	293	16	action	action	NOUN
ddj-47	293	17	[	[	X
ddj-47	293	18	13	13	NUM
ddj-47	293	19	]	]	PUNCT
ddj-47	293	20	,	,	PUNCT
ddj-47	293	21	and	and	CCONJ
ddj-47	293	22	the	the	DET
ddj-47	293	23	contraction	contraction	NOUN
ddj-47	293	24	of	of	ADP
ddj-47	293	25	dna	dna	PROPN
ddj-47	293	26	strand	strand	NOUN
ddj-47	293	27	might	might	AUX
ddj-47	293	28	make	make	VERB
ddj-47	293	29	possible	possible	ADJ
ddj-47	293	30	to	to	PART
ddj-47	293	31	have	have	VERB
ddj-47	293	32	enzyme	enzyme	NOUN
ddj-47	293	33	-	-	PUNCT
ddj-47	293	34	dna	dna	NOUN
ddj-47	293	35	interaction	interaction	NOUN
ddj-47	293	36	involving	involve	VERB
ddj-47	293	37	fusion	fusion	NOUN
ddj-47	293	38	along	along	ADP
ddj-47	293	39	several	several	ADJ
ddj-47	293	40	subsequent	subsequent	ADJ
ddj-47	293	41	amino	amino	NOUN
ddj-47	293	42	-	-	PUNCT
ddj-47	293	43	acids	acid	NOUN
ddj-47	293	44	.	.	PUNCT
ddj-47	294	1	this	this	DET
ddj-47	294	2	kind	kind	NOUN
ddj-47	294	3	of	of	ADP
ddj-47	294	4	mechanism	mechanism	NOUN
ddj-47	294	5	might	might	AUX
ddj-47	294	6	work	work	VERB
ddj-47	294	7	also	also	ADV
ddj-47	294	8	in	in	ADP
ddj-47	294	9	the	the	DET
ddj-47	294	10	case	case	NOUN
ddj-47	294	11	that	that	SCONJ
ddj-47	294	12	attachment	attachment	NOUN
ddj-47	294	13	region	region	NOUN
ddj-47	294	14	corresponds	correspond	VERB
ddj-47	294	15	to	to	ADP
ddj-47	294	16	several	several	ADJ
ddj-47	294	17	exons	exon	NOUN
ddj-47	294	18	.	.	PUNCT
ddj-47	295	1	there	there	PRON
ddj-47	295	2	is	be	VERB
ddj-47	295	3	however	however	ADV
ddj-47	295	4	no	no	DET
ddj-47	295	5	need	need	NOUN
ddj-47	295	6	to	to	PART
ddj-47	295	7	assume	assume	VERB
ddj-47	295	8	that	that	SCONJ
ddj-47	295	9	subsequent	subsequent	ADJ
ddj-47	295	10	amino	amino	NOUN
ddj-47	295	11	-	-	PUNCT
ddj-47	295	12	acids	acid	NOUN
ddj-47	295	13	are	be	AUX
ddj-47	295	14	form	form	NOUN
ddj-47	295	15	a	a	DET
ddj-47	295	16	contact	contact	NOUN
ddj-47	295	17	with	with	ADP
ddj-47	295	18	dna	dna	PROPN
ddj-47	295	19	.	.	PUNCT
ddj-47	296	1	one	one	NUM
ddj-47	296	2	can	can	AUX
ddj-47	296	3	of	of	ADP
ddj-47	296	4	course	course	NOUN
ddj-47	296	5	ask	ask	VERB
ddj-47	296	6	whether	whether	SCONJ
ddj-47	296	7	genes	gene	NOUN
ddj-47	296	8	containing	contain	VERB
ddj-47	296	9	introns	intron	NOUN
ddj-47	296	10	tend	tend	VERB
ddj-47	296	11	to	to	PART
ddj-47	296	12	code	code	VERB
ddj-47	296	13	for	for	ADP
ddj-47	296	14	proteins	protein	NOUN
ddj-47	296	15	which	which	PRON
ddj-47	296	16	are	be	AUX
ddj-47	296	17	used	use	VERB
ddj-47	296	18	for	for	ADP
ddj-47	296	19	topological	topological	ADJ
ddj-47	296	20	quantum	quantum	ADJ
ddj-47	296	21	computations	computation	NOUN
ddj-47	296	22	.	.	PUNCT
ddj-47	297	1	introns	intron	NOUN
ddj-47	297	2	,	,	PUNCT
ddj-47	297	3	perhaps	perhaps	ADV
ddj-47	297	4	the	the	DET
ddj-47	297	5	repeating	repeat	VERB
ddj-47	297	6	sequences	sequence	NOUN
ddj-47	297	7	with	with	ADP
ddj-47	297	8	no	no	DET
ddj-47	297	9	obvious	obvious	ADJ
ddj-47	297	10	function	function	NOUN
ddj-47	297	11	,	,	PUNCT
ddj-47	297	12	would	would	AUX
ddj-47	297	13	have	have	VERB
ddj-47	297	14	at	at	ADP
ddj-47	297	15	least	least	ADJ
ddj-47	297	16	this	this	DET
ddj-47	297	17	useful	useful	ADJ
ddj-47	297	18	function	function	NOUN
ddj-47	297	19	but	but	CCONJ
ddj-47	297	20	very	very	ADV
ddj-47	297	21	probably	probably	ADV
ddj-47	297	22	much	much	ADV
ddj-47	297	23	more	more	ADV
ddj-47	297	24	useful	useful	ADJ
ddj-47	297	25	ones	one	NOUN
ddj-47	297	26	too	too	ADV
ddj-47	297	27	(	(	PUNCT
ddj-47	297	28	they	they	PRON
ddj-47	297	29	are	be	AUX
ddj-47	297	30	now	now	ADV
ddj-47	297	31	known	know	VERB
ddj-47	297	32	to	to	PART
ddj-47	297	33	be	be	AUX
ddj-47	297	34	transcribed	transcribe	VERB
ddj-47	297	35	to	to	ADP
ddj-47	297	36	rna	rna	PROPN
ddj-47	297	37	and	and	CCONJ
ddj-47	297	38	tgd	tgd	PROPN
ddj-47	297	39	suggest	suggest	VERB
ddj-47	297	40	that	that	SCONJ
ddj-47	297	41	language	language	NOUN
ddj-47	297	42	corresponds	correspond	VERB
ddj-47	297	43	to	to	ADP
ddj-47	297	44	intronic	intronic	ADJ
ddj-47	297	45	gene	gene	NOUN
ddj-47	297	46	expression	expression	NOUN
ddj-47	297	47	)	)	PUNCT
ddj-47	297	48	.	.	PUNCT
ddj-47	298	1	the	the	DET
ddj-47	298	2	emergence	emergence	NOUN
ddj-47	298	3	of	of	ADP
ddj-47	298	4	introns	intron	NOUN
ddj-47	298	5	might	might	AUX
ddj-47	298	6	be	be	AUX
ddj-47	298	7	somewhat	somewhat	ADV
ddj-47	298	8	like	like	ADP
ddj-47	298	9	the	the	DET
ddj-47	298	10	emergence	emergence	NOUN
ddj-47	298	11	of	of	ADP
ddj-47	298	12	information	information	NOUN
ddj-47	298	13	society	society	NOUN
ddj-47	298	14	.	.	PUNCT
ddj-47	299	1	the	the	DET
ddj-47	299	2	folding	folding	NOUN
ddj-47	299	3	of	of	ADP
ddj-47	299	4	proteins	protein	NOUN
ddj-47	299	5	tends	tend	VERB
ddj-47	299	6	to	to	PART
ddj-47	299	7	be	be	AUX
ddj-47	299	8	conserved	conserve	VERB
ddj-47	299	9	in	in	ADP
ddj-47	299	10	the	the	DET
ddj-47	299	11	evolution	evolution	NOUN
ddj-47	299	12	whereas	whereas	SCONJ
ddj-47	299	13	primary	primary	ADJ
ddj-47	299	14	structure	structure	NOUN
ddj-47	299	15	can	can	AUX
ddj-47	299	16	change	change	VERB
ddj-47	299	17	quite	quite	DET
ddj-47	299	18	a	a	DET
ddj-47	299	19	lot	lot	NOUN
ddj-47	299	20	apart	apart	ADV
ddj-47	299	21	from	from	ADP
ddj-47	299	22	some	some	DET
ddj-47	299	23	amino	amino	NOUN
ddj-47	299	24	-	-	PUNCT
ddj-47	299	25	acids	acid	NOUN
ddj-47	299	26	critical	critical	ADJ
ddj-47	299	27	for	for	ADP
ddj-47	299	28	enzymatic	enzymatic	ADJ
ddj-47	299	29	action	action	NOUN
ddj-47	299	30	.	.	PUNCT
ddj-47	300	1	this	this	PRON
ddj-47	300	2	confirms	confirm	VERB
ddj-47	300	3	with	with	SCONJ
ddj-47	300	4	the	the	DET
ddj-47	300	5	effective	effective	ADJ
ddj-47	300	6	base	base	NOUN
ddj-47	300	7	pairing	pairing	NOUN
ddj-47	300	8	interaction	interaction	NOUN
ddj-47	300	9	between	between	ADP
ddj-47	300	10	amino	amino	NOUN
ddj-47	300	11	-	-	PUNCT
ddj-47	300	12	acids	acid	NOUN
ddj-47	300	13	and	and	CCONJ
ddj-47	300	14	dna	dna	NOUN
ddj-47	300	15	to	to	PART
ddj-47	300	16	be	be	AUX
ddj-47	300	17	discussed	discuss	VERB
ddj-47	300	18	later	later	ADV
ddj-47	300	19	and	and	CCONJ
ddj-47	300	20	would	would	AUX
ddj-47	300	21	mean	mean	VERB
ddj-47	300	22	that	that	SCONJ
ddj-47	300	23	dnaamino	dnaamino	NOUN
ddj-47	300	24	-	-	PUNCT
ddj-47	300	25	acid	acid	NOUN
ddj-47	300	26	tqc	tqc	ADJ
ddj-47	300	27	programs	program	NOUN
ddj-47	300	28	are	be	AUX
ddj-47	300	29	rather	rather	ADV
ddj-47	300	30	robust	robust	ADJ
ddj-47	300	31	against	against	ADP
ddj-47	300	32	mutations	mutation	NOUN
ddj-47	300	33	.	.	PUNCT
ddj-47	301	1	3	3	NUM
ddj-47	301	2	model	model	NOUN
ddj-47	301	3	for	for	ADP
ddj-47	301	4	the	the	DET
ddj-47	301	5	folding	fold	VERB
ddj-47	301	6	code	code	NOUN
ddj-47	301	7	based	base	VERB
ddj-47	301	8	on	on	ADP
ddj-47	301	9	interactions	interaction	NOUN
ddj-47	301	10	mediated	mediate	VERB
ddj-47	301	11	by	by	ADP
ddj-47	301	12	flux	flux	NOUN
ddj-47	301	13	tubes	tube	NOUN
ddj-47	301	14	between	between	ADP
ddj-47	301	15	aminoacids	aminoacid	NOUN
ddj-47	301	16	the	the	DET
ddj-47	301	17	model	model	NOUN
ddj-47	301	18	for	for	SCONJ
ddj-47	301	19	the	the	DET
ddj-47	301	20	protein	protein	NOUN
ddj-47	301	21	folding	fold	VERB
ddj-47	301	22	to	to	PART
ddj-47	301	23	be	be	AUX
ddj-47	301	24	discussed	discuss	VERB
ddj-47	301	25	in	in	ADP
ddj-47	301	26	this	this	DET
ddj-47	301	27	section	section	NOUN
ddj-47	301	28	relies	rely	VERB
ddj-47	301	29	on	on	ADP
ddj-47	301	30	the	the	DET
ddj-47	301	31	hypothesis	hypothesis	NOUN
ddj-47	301	32	that	that	DET
ddj-47	301	33	dark	dark	ADJ
ddj-47	301	34	flux	flux	NOUN
ddj-47	301	35	tube	tube	NOUN
ddj-47	301	36	connections	connection	NOUN
ddj-47	301	37	between	between	ADP
ddj-47	301	38	amino	amino	NOUN
ddj-47	301	39	-	-	PUNCT
ddj-47	301	40	acids	acid	NOUN
ddj-47	301	41	and	and	CCONJ
ddj-47	301	42	their	their	PRON
ddj-47	301	43	contractions	contraction	NOUN
ddj-47	301	44	in	in	ADP
ddj-47	301	45	~	~	PUNCT
ddj-47	301	46	changing	change	VERB
ddj-47	301	47	phase	phase	NOUN
ddj-47	301	48	transitions	transition	NOUN
ddj-47	301	49	determine	determine	VERB
ddj-47	301	50	the	the	DET
ddj-47	301	51	dynamics	dynamic	NOUN
ddj-47	301	52	of	of	ADP
ddj-47	301	53	the	the	DET
ddj-47	301	54	folding	folding	NOUN
ddj-47	301	55	.	.	PUNCT
ddj-47	302	1	a	a	DET
ddj-47	302	2	model	model	NOUN
ddj-47	302	3	in	in	ADP
ddj-47	302	4	which	which	PRON
ddj-47	302	5	flux	flux	NOUN
ddj-47	302	6	tubes	tube	NOUN
ddj-47	302	7	between	between	ADP
ddj-47	302	8	amino	amino	NOUN
ddj-47	302	9	-	-	PUNCT
ddj-47	302	10	acids	acid	NOUN
ddj-47	302	11	and	and	CCONJ
ddj-47	302	12	water	water	NOUN
ddj-47	302	13	molecules	molecule	NOUN
ddj-47	302	14	alone	alone	ADV
ddj-47	302	15	induce	induce	VERB
ddj-47	302	16	the	the	DET
ddj-47	302	17	interactions	interaction	NOUN
ddj-47	302	18	between	between	ADP
ddj-47	302	19	amino	amino	NOUN
ddj-47	302	20	-	-	PUNCT
ddj-47	302	21	acids	acid	NOUN
ddj-47	302	22	will	will	AUX
ddj-47	302	23	be	be	AUX
ddj-47	302	24	discussed	discuss	VERB
ddj-47	302	25	in	in	ADP
ddj-47	302	26	separate	separate	ADJ
ddj-47	302	27	section	section	NOUN
ddj-47	302	28	.	.	PUNCT
ddj-47	303	1	a	a	DET
ddj-47	303	2	realistic	realistic	ADJ
ddj-47	303	3	model	model	NOUN
ddj-47	303	4	might	might	AUX
ddj-47	303	5	involve	involve	VERB
ddj-47	303	6	both	both	DET
ddj-47	303	7	kind	kind	NOUN
ddj-47	303	8	of	of	ADP
ddj-47	303	9	flux	flux	NOUN
ddj-47	303	10	tubes	tube	NOUN
ddj-47	303	11	.	.	PUNCT
ddj-47	304	1	3.1	3.1	NUM
ddj-47	304	2	4	4	NUM
ddj-47	304	3	-	-	PUNCT
ddj-47	304	4	d	d	NOUN
ddj-47	304	5	spin	spin	NOUN
ddj-47	304	6	glass	glass	NOUN
ddj-47	304	7	energy	energy	NOUN
ddj-47	304	8	landscape	landscape	NOUN
ddj-47	304	9	and	and	CCONJ
ddj-47	304	10	code	code	NOUN
ddj-47	304	11	of	of	ADP
ddj-47	304	12	catalytic	catalytic	ADJ
ddj-47	304	13	action	action	NOUN
ddj-47	304	14	there	there	PRON
ddj-47	304	15	is	be	VERB
ddj-47	304	16	a	a	DET
ddj-47	304	17	proposal	proposal	NOUN
ddj-47	304	18	that	that	SCONJ
ddj-47	304	19	protein	protein	NOUN
ddj-47	304	20	folding	fold	VERB
ddj-47	304	21	corresponds	correspond	VERB
ddj-47	304	22	to	to	ADP
ddj-47	304	23	a	a	DET
ddj-47	304	24	motion	motion	NOUN
ddj-47	304	25	in	in	ADP
ddj-47	304	26	a	a	DET
ddj-47	304	27	fractal	fractal	ADJ
ddj-47	304	28	spin	spin	NOUN
ddj-47	304	29	glass	glass	NOUN
ddj-47	304	30	energy	energy	NOUN
ddj-47	304	31	landscape	landscape	NOUN
ddj-47	304	32	in	in	ADP
ddj-47	304	33	presence	presence	NOUN
ddj-47	304	34	of	of	ADP
ddj-47	304	35	external	external	ADJ
ddj-47	304	36	perturbations	perturbation	NOUN
ddj-47	304	37	due	due	ADP
ddj-47	304	38	to	to	ADP
ddj-47	304	39	the	the	DET
ddj-47	304	40	presence	presence	NOUN
ddj-47	304	41	of	of	ADP
ddj-47	304	42	water	water	NOUN
ddj-47	304	43	and	and	CCONJ
ddj-47	304	44	leading	lead	VERB
ddj-47	304	45	to	to	ADP
ddj-47	304	46	the	the	DET
ddj-47	304	47	bottom	bottom	NOUN
ddj-47	304	48	of	of	ADP
ddj-47	304	49	some	some	DET
ddj-47	304	50	deep	deep	ADJ
ddj-47	304	51	valley	valley	NOUN
ddj-47	305	1	[	[	X
ddj-47	305	2	12	12	NUM
ddj-47	305	3	,	,	PUNCT
ddj-47	305	4	12	12	NUM
ddj-47	305	5	]	]	PUNCT
ddj-47	305	6	.	.	PUNCT
ddj-47	306	1	in	in	ADP
ddj-47	306	2	tgd	tgd	PROPN
ddj-47	306	3	framework	framework	NOUN
ddj-47	306	4	3	3	NUM
ddj-47	306	5	-	-	SYM
ddj-47	306	6	d	d	NOUN
ddj-47	306	7	spin	spin	NOUN
ddj-47	306	8	glass	glass	NOUN
ddj-47	306	9	landscape	landscape	NOUN
ddj-47	306	10	is	be	AUX
ddj-47	306	11	replaced	replace	VERB
ddj-47	306	12	by	by	ADP
ddj-47	306	13	4	4	NUM
ddj-47	306	14	-	-	SYM
ddj-47	306	15	d	d	NOUN
ddj-47	306	16	one	one	NUM
ddj-47	306	17	[	[	X
ddj-47	306	18	19	19	NUM
ddj-47	306	19	]	]	PUNCT
ddj-47	306	20	.	.	PUNCT
ddj-47	307	1	the	the	DET
ddj-47	307	2	vacuum	vacuum	NOUN
ddj-47	307	3	degeneracy	degeneracy	NOUN
ddj-47	307	4	of	of	ADP
ddj-47	307	5	kähler	kähler	PROPN
ddj-47	307	6	action	action	NOUN
ddj-47	307	7	implies	imply	VERB
ddj-47	307	8	4	4	NUM
ddj-47	307	9	-	-	SYM
ddj-47	307	10	d	d	NOUN
ddj-47	307	11	spin	spin	NOUN
ddj-47	307	12	glass	glass	NOUN
ddj-47	307	13	energy	energy	NOUN
ddj-47	307	14	landscape	landscape	NOUN
ddj-47	307	15	in	in	ADP
ddj-47	307	16	the	the	DET
ddj-47	307	17	sense	sense	NOUN
ddj-47	307	18	that	that	SCONJ
ddj-47	307	19	quantum	quantum	NOUN
ddj-47	307	20	jump	jump	NOUN
ddj-47	307	21	sequences	sequence	NOUN
ddj-47	307	22	lead	lead	VERB
ddj-47	307	23	to	to	ADP
ddj-47	307	24	space	space	NOUN
ddj-47	307	25	-	-	PUNCT
ddj-47	307	26	time	time	NOUN
ddj-47	307	27	sheets	sheet	NOUN
ddj-47	307	28	representing	represent	VERB
ddj-47	307	29	asymptotic	asymptotic	ADJ
ddj-47	307	30	self	self	NOUN
ddj-47	307	31	organization	organization	NOUN
ddj-47	307	32	patterns	pattern	NOUN
ddj-47	307	33	depending	depend	VERB
ddj-47	307	34	only	only	ADV
ddj-47	307	35	weakly	weakly	ADV
ddj-47	307	36	on	on	ADP
ddj-47	307	37	the	the	DET
ddj-47	307	38	initial	initial	ADJ
ddj-47	307	39	conditions	condition	NOUN
ddj-47	307	40	(	(	PUNCT
ddj-47	307	41	with	with	ADP
ddj-47	307	42	respect	respect	NOUN
ddj-47	307	43	to	to	ADP
ddj-47	307	44	subjective	subjective	ADJ
ddj-47	307	45	time	time	NOUN
ddj-47	307	46	measured	measure	VERB
ddj-47	307	47	as	as	ADP
ddj-47	307	48	quantum	quantum	NOUN
ddj-47	307	49	jumps	jump	NOUN
ddj-47	307	50	)	)	PUNCT
ddj-47	307	51	.	.	PUNCT
ddj-47	308	1	proteins	protein	NOUN
ddj-47	308	2	would	would	AUX
ddj-47	308	3	be	be	AUX
ddj-47	308	4	like	like	ADP
ddj-47	308	5	skilled	skilled	ADJ
ddj-47	308	6	musicians	musician	NOUN
ddj-47	308	7	possessing	possess	VERB
ddj-47	308	8	a	a	DET
ddj-47	308	9	repertoire	repertoire	NOUN
ddj-47	308	10	of	of	ADP
ddj-47	308	11	motor	motor	NOUN
ddj-47	308	12	activities	activity	NOUN
ddj-47	308	13	represented	represent	VERB
ddj-47	308	14	by	by	ADP
ddj-47	308	15	deep	deep	ADJ
ddj-47	308	16	valleys	valley	NOUN
ddj-47	308	17	in	in	ADP
ddj-47	308	18	4	4	NUM
ddj-47	308	19	-	-	SYM
ddj-47	308	20	d	d	NOUN
ddj-47	308	21	spin	spin	NOUN
ddj-47	308	22	glass	glass	NOUN
ddj-47	308	23	landscape	landscape	NOUN
ddj-47	308	24	.	.	PUNCT
ddj-47	309	1	this	this	DET
ddj-47	309	2	picture	picture	NOUN
ddj-47	309	3	generalizes	generalize	VERB
ddj-47	309	4	to	to	ADP
ddj-47	309	5	the	the	DET
ddj-47	309	6	functioning	functioning	NOUN
ddj-47	309	7	of	of	ADP
ddj-47	309	8	living	living	NOUN
ddj-47	309	9	matter	matter	NOUN
ddj-47	309	10	in	in	ADP
ddj-47	309	11	various	various	ADJ
ddj-47	309	12	scales	scale	NOUN
ddj-47	309	13	and	and	CCONJ
ddj-47	309	14	the	the	DET
ddj-47	309	15	quantum	quantum	ADJ
ddj-47	309	16	dynamics	dynamic	NOUN
ddj-47	309	17	of	of	ADP
ddj-47	309	18	brain	brain	NOUN
ddj-47	309	19	is	be	AUX
ddj-47	309	20	a	a	DET
ddj-47	309	21	natural	natural	ADJ
ddj-47	309	22	application	application	NOUN
ddj-47	309	23	giving	giving	NOUN
ddj-47	309	24	also	also	ADV
ddj-47	309	25	connection	connection	NOUN
ddj-47	309	26	with	with	ADP
ddj-47	309	27	p	p	NOUN
ddj-47	309	28	-	-	PUNCT
ddj-47	309	29	adicity	adicity	NOUN
ddj-47	309	30	since	since	SCONJ
ddj-47	309	31	ultametric	ultametric	ADJ
ddj-47	309	32	topology	topology	NOUN
ddj-47	309	33	is	be	AUX
ddj-47	309	34	naturally	naturally	ADV
ddj-47	309	35	associated	associate	VERB
ddj-47	309	36	with	with	ADP
ddj-47	309	37	the	the	DET
ddj-47	309	38	space	space	NOUN
ddj-47	309	39	of	of	ADP
ddj-47	309	40	valley	valley	NOUN
ddj-47	309	41	bottoms	bottom	NOUN
ddj-47	309	42	.	.	PUNCT
ddj-47	310	1	in	in	ADP
ddj-47	310	2	the	the	DET
ddj-47	310	3	case	case	NOUN
ddj-47	310	4	of	of	ADP
ddj-47	310	5	catalytic	catalytic	ADJ
ddj-47	310	6	reactions	reaction	NOUN
ddj-47	310	7	a	a	DET
ddj-47	310	8	quantum	quantum	NOUN
ddj-47	310	9	jump	jump	NOUN
ddj-47	310	10	changing	change	VERB
ddj-47	310	11	planck	planck	NOUN
ddj-47	310	12	constant	constant	ADJ
ddj-47	310	13	for	for	ADP
ddj-47	310	14	some	some	DET
ddj-47	310	15	magnetic	magnetic	ADJ
ddj-47	310	16	flux	flux	NOUN
ddj-47	310	17	tubes	tube	NOUN
ddj-47	310	18	connecting	connect	VERB
ddj-47	310	19	some	some	DET
ddj-47	310	20	living	live	VERB
ddj-47	310	21	biomolecules	biomolecule	NOUN
ddj-47	310	22	(	(	PUNCT
ddj-47	310	23	dna	dna	PROPN
ddj-47	310	24	,	,	PUNCT
ddj-47	310	25	rna	rna	NOUN
ddj-47	310	26	,	,	PUNCT
ddj-47	310	27	aminoacids	aminoacid	NOUN
ddj-47	310	28	,	,	PUNCT
ddj-47	310	29	water	water	NOUN
ddj-47	310	30	(	(	PUNCT
ddj-47	310	31	?	?	PUNCT
ddj-47	310	32	)	)	PUNCT
ddj-47	310	33	,	,	PUNCT
ddj-47	310	34	..	..	PUNCT
ddj-47	310	35	)	)	PUNCT
ddj-47	310	36	and	and	CCONJ
ddj-47	310	37	changing	change	VERB
ddj-47	310	38	the	the	DET
ddj-47	310	39	lengths	length	NOUN
ddj-47	310	40	of	of	ADP
ddj-47	310	41	these	these	DET
ddj-47	310	42	flux	flux	NOUN
ddj-47	310	43	tubes	tube	NOUN
ddj-47	310	44	could	could	AUX
ddj-47	310	45	be	be	AUX
ddj-47	310	46	the	the	DET
ddj-47	310	47	basic	basic	ADJ
ddj-47	310	48	mechanism	mechanism	NOUN
ddj-47	310	49	leading	lead	VERB
ddj-47	310	50	from	from	ADP
ddj-47	310	51	a	a	DET
ddj-47	310	52	given	give	VERB
ddj-47	310	53	valley	valley	NOUN
ddj-47	310	54	to	to	ADP
ddj-47	310	55	a	a	DET
ddj-47	310	56	new	new	ADJ
ddj-47	310	57	one	one	NOUN
ddj-47	310	58	and	and	CCONJ
ddj-47	310	59	the	the	DET
ddj-47	310	60	reduction	reduction	NOUN
ddj-47	310	61	of	of	ADP
ddj-47	310	62	the	the	DET
ddj-47	310	63	genetic	genetic	ADJ
ddj-47	310	64	code	code	NOUN
ddj-47	310	65	to	to	ADP
ddj-47	310	66	single	single	ADJ
ddj-47	310	67	nucleotide	nucleotide	NOUN
ddj-47	310	68	or	or	CCONJ
ddj-47	310	69	di	di	NOUN
ddj-47	310	70	-	-	ADJ
ddj-47	310	71	nucleotide	nucleotide	ADJ
ddj-47	310	72	code	code	NOUN
ddj-47	310	73	would	would	AUX
ddj-47	310	74	code	code	VERB
ddj-47	310	75	this	this	DET
ddj-47	310	76	quantum	quantum	NOUN
ddj-47	310	77	jumps	jump	NOUN
ddj-47	310	78	.	.	PUNCT
ddj-47	311	1	issn	issn	PROPN
ddj-47	311	2	:	:	PUNCT
ddj-47	311	3	2159	2159	NUM
ddj-47	311	4	-	-	SYM
ddj-47	311	5	0465	0465	NUM
ddj-47	311	6	dna	dna	PROPN
ddj-47	311	7	decipher	decipher	PROPN
ddj-47	311	8	journal	journal	PROPN
ddj-47	311	9	june	june	PROPN
ddj-47	311	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	311	11	published	publish	VERB
ddj-47	311	12	by	by	ADP
ddj-47	311	13	quantumdream	quantumdream	PROPN
ddj-47	311	14	,	,	PUNCT
ddj-47	311	15	inc	inc	PROPN
ddj-47	311	16	.	.	PROPN
ddj-47	311	17	dna	dna	PROPN
ddj-47	311	18	decipher	decipher	PROPN
ddj-47	311	19	journal	journal	NOUN
ddj-47	312	1	|	|	ADV
ddj-47	312	2	may	may	AUX
ddj-47	312	3	2013	2013	NUM
ddj-47	312	4	|	|	ADV
ddj-47	312	5	volume	volume	NOUN
ddj-47	312	6	3	3	NUM
ddj-47	312	7	|	|	NOUN
ddj-47	312	8	issue	issue	VERB
ddj-47	312	9	1	1	NUM
ddj-47	312	10	|	|	ADV
ddj-47	312	11	pp	pp	ADJ
ddj-47	312	12	.	.	PUNCT
ddj-47	313	1	58	58	NUM
ddj-47	313	2	-	-	SYM
ddj-47	313	3	88	88	NUM
ddj-47	313	4	68	68	NUM
ddj-47	313	5	pitkänen	pitkänen	NOUN
ddj-47	313	6	,	,	PUNCT
ddj-47	313	7	m.	m.	NOUN
ddj-47	313	8	,	,	PUNCT
ddj-47	313	9	a	a	DET
ddj-47	313	10	model	model	NOUN
ddj-47	313	11	for	for	ADP
ddj-47	313	12	protein	protein	NOUN
ddj-47	313	13	folding	folding	NOUN
ddj-47	313	14	and	and	CCONJ
ddj-47	313	15	biocatalysis	biocatalysis	NOUN
ddj-47	313	16	to	to	ADP
ddj-47	313	17	me	i	PRON
ddj-47	313	18	this	this	DET
ddj-47	313	19	proposal	proposal	NOUN
ddj-47	313	20	for	for	ADP
ddj-47	313	21	the	the	DET
ddj-47	313	22	folding	fold	VERB
ddj-47	313	23	code	code	NOUN
ddj-47	313	24	or	or	CCONJ
ddj-47	313	25	rather	rather	ADV
ddj-47	313	26	,	,	PUNCT
ddj-47	313	27	the	the	DET
ddj-47	313	28	code	code	NOUN
ddj-47	313	29	of	of	ADP
ddj-47	313	30	entire	entire	ADJ
ddj-47	313	31	biocatalysis	biocatalysis	NOUN
ddj-47	313	32	looks	look	VERB
ddj-47	313	33	so	so	ADV
ddj-47	313	34	beautiful	beautiful	ADJ
ddj-47	313	35	that	that	SCONJ
ddj-47	313	36	it	it	PRON
ddj-47	313	37	deserves	deserve	VERB
ddj-47	313	38	to	to	PART
ddj-47	313	39	be	be	AUX
ddj-47	313	40	killedthis	killedthis	NOUN
ddj-47	313	41	should	should	AUX
ddj-47	313	42	be	be	AUX
ddj-47	313	43	easy	easy	ADJ
ddj-47	313	44	for	for	ADP
ddj-47	313	45	a	a	DET
ddj-47	313	46	professional	professional	ADJ
ddj-47	313	47	biochemist	biochemist	NOUN
ddj-47	313	48	.	.	PUNCT
ddj-47	314	1	if	if	SCONJ
ddj-47	314	2	the	the	DET
ddj-47	314	3	hypothesis	hypothesis	NOUN
ddj-47	314	4	survives	survive	VERB
ddj-47	314	5	,	,	PUNCT
ddj-47	314	6	it	it	PRON
ddj-47	314	7	would	would	AUX
ddj-47	314	8	provide	provide	VERB
ddj-47	314	9	a	a	DET
ddj-47	314	10	royal	royal	ADJ
ddj-47	314	11	road	road	NOUN
ddj-47	314	12	to	to	ADP
ddj-47	314	13	the	the	DET
ddj-47	314	14	understanding	understanding	NOUN
ddj-47	314	15	of	of	ADP
ddj-47	314	16	the	the	DET
ddj-47	314	17	catalytic	catalytic	ADJ
ddj-47	314	18	bio	bio	NOUN
ddj-47	314	19	-	-	NOUN
ddj-47	314	20	chemistry	chemistry	NOUN
ddj-47	314	21	.	.	PUNCT
ddj-47	315	1	3.2	3.2	NUM
ddj-47	315	2	flux	flux	NOUN
ddj-47	315	3	tubes	tube	NOUN
ddj-47	315	4	and	and	CCONJ
ddj-47	315	5	amino	amino	NOUN
ddj-47	315	6	-	-	PUNCT
ddj-47	315	7	acids	acids	ADJ
ddj-47	315	8	3.2.1	3.2.1	NUM
ddj-47	315	9	matter	matter	NOUN
ddj-47	315	10	antimatter	antimatter	NOUN
ddj-47	315	11	asymmetry	asymmetry	NOUN
ddj-47	315	12	at	at	ADP
ddj-47	315	13	the	the	DET
ddj-47	315	14	level	level	NOUN
ddj-47	315	15	of	of	ADP
ddj-47	315	16	interactions	interaction	NOUN
ddj-47	315	17	of	of	ADP
ddj-47	315	18	amino	amino	NOUN
ddj-47	315	19	-	-	PUNCT
ddj-47	315	20	acids	acids	NOUN
ddj-47	315	21	the	the	DET
ddj-47	315	22	first	first	ADJ
ddj-47	315	23	thing	thing	NOUN
ddj-47	315	24	that	that	PRON
ddj-47	315	25	i	i	PRON
ddj-47	315	26	learned	learn	VERB
ddj-47	315	27	was	be	AUX
ddj-47	315	28	that	that	SCONJ
ddj-47	315	29	in	in	ADP
ddj-47	315	30	the	the	DET
ddj-47	315	31	case	case	NOUN
ddj-47	315	32	of	of	ADP
ddj-47	315	33	amino	amino	NOUN
ddj-47	315	34	-	-	PUNCT
ddj-47	315	35	acid	acid	NOUN
ddj-47	315	36	belonging	belonging	NOUN
ddj-47	315	37	to	to	ADP
ddj-47	315	38	protein	protein	NOUN
ddj-47	315	39	interior	interior	ADJ
ddj-47	315	40	second	second	ADJ
ddj-47	315	41	nucleotide	nucleotide	NOUN
ddj-47	315	42	y	y	PROPN
ddj-47	315	43	in	in	ADP
ddj-47	315	44	the	the	DET
ddj-47	315	45	codon	codon	NOUN
ddj-47	315	46	xy	xy	PROPN
ddj-47	316	1	z	z	NOUN
ddj-47	316	2	coding	code	VERB
ddj-47	316	3	for	for	ADP
ddj-47	316	4	amino	amino	NOUN
ddj-47	316	5	-	-	PUNCT
ddj-47	316	6	acid	acid	NOUN
ddj-47	316	7	is	be	AUX
ddj-47	316	8	what	what	PRON
ddj-47	316	9	matters	matter	VERB
ddj-47	316	10	.	.	PUNCT
ddj-47	317	1	only	only	ADV
ddj-47	317	2	y	y	PROPN
ddj-47	317	3	=	=	PUNCT
ddj-47	317	4	a	a	PROPN
ddj-47	317	5	,	,	PUNCT
ddj-47	317	6	g	g	PROPN
ddj-47	317	7	amino	amino	NOUN
ddj-47	317	8	-	-	PUNCT
ddj-47	317	9	acid	acid	NOUN
ddj-47	317	10	residue	residue	NOUN
ddj-47	317	11	can	can	AUX
ddj-47	317	12	form	form	VERB
ddj-47	317	13	hydrogen	hydrogen	NOUN
ddj-47	317	14	bonds	bond	NOUN
ddj-47	317	15	and	and	CCONJ
ddj-47	317	16	is	be	AUX
ddj-47	317	17	hydrophilic	hydrophilic	ADJ
ddj-47	317	18	and	and	CCONJ
ddj-47	317	19	thus	thus	ADV
ddj-47	317	20	interacts	interact	VERB
ddj-47	317	21	strongly	strongly	ADV
ddj-47	317	22	with	with	ADP
ddj-47	317	23	water	water	NOUN
ddj-47	317	24	and	and	CCONJ
ddj-47	317	25	dna	dna	NOUN
ddj-47	317	26	and	and	CCONJ
ddj-47	317	27	rna	rna	PROPN
ddj-47	317	28	.	.	PUNCT
ddj-47	318	1	in	in	ADP
ddj-47	318	2	t	t	PROPN
ddj-47	318	3	,	,	PUNCT
ddj-47	318	4	c	c	NOUN
ddj-47	318	5	case	case	NOUN
ddj-47	318	6	the	the	DET
ddj-47	318	7	formation	formation	NOUN
ddj-47	318	8	of	of	ADP
ddj-47	318	9	hydrogen	hydrogen	NOUN
ddj-47	318	10	bonds	bond	NOUN
ddj-47	318	11	is	be	AUX
ddj-47	318	12	impossible	impossible	ADJ
ddj-47	318	13	or	or	CCONJ
ddj-47	318	14	rare	rare	ADJ
ddj-47	318	15	(	(	PUNCT
ddj-47	318	16	ser	ser	NOUN
ddj-47	318	17	,	,	PUNCT
ddj-47	318	18	thr	thr	PROPN
ddj-47	318	19	)	)	PUNCT
ddj-47	318	20	.	.	PUNCT
ddj-47	319	1	in	in	ADP
ddj-47	319	2	their	their	PRON
ddj-47	319	3	interactions	interaction	NOUN
ddj-47	319	4	with	with	ADP
ddj-47	319	5	water	water	NOUN
ddj-47	319	6	these	these	DET
ddj-47	319	7	amino	amino	NOUN
ddj-47	319	8	-	-	PUNCT
ddj-47	319	9	acids	acid	NOUN
ddj-47	319	10	are	be	AUX
ddj-47	319	11	passive	passive	ADJ
ddj-47	319	12	,	,	PUNCT
ddj-47	319	13	or	or	CCONJ
ddj-47	319	14	rather	rather	ADV
ddj-47	319	15	-	-	PUNCT
ddj-47	319	16	avoid	avoid	VERB
ddj-47	319	17	waterand	waterand	ADV
ddj-47	319	18	tend	tend	VERB
ddj-47	319	19	to	to	PART
ddj-47	319	20	interact	interact	VERB
ddj-47	319	21	with	with	ADP
ddj-47	319	22	each	each	DET
ddj-47	319	23	other	other	ADJ
ddj-47	319	24	.	.	PUNCT
ddj-47	320	1	this	this	DET
ddj-47	320	2	division	division	NOUN
ddj-47	320	3	is	be	AUX
ddj-47	320	4	fundamental	fundamental	ADJ
ddj-47	320	5	for	for	ADP
ddj-47	320	6	the	the	DET
ddj-47	320	7	understanding	understanding	NOUN
ddj-47	320	8	of	of	ADP
ddj-47	320	9	the	the	DET
ddj-47	320	10	interactions	interaction	NOUN
ddj-47	320	11	of	of	ADP
ddj-47	320	12	amino	amino	NOUN
ddj-47	320	13	-	-	PUNCT
ddj-47	320	14	acids	acid	NOUN
ddj-47	320	15	.	.	PUNCT
ddj-47	321	1	the	the	DET
ddj-47	321	2	division	division	NOUN
ddj-47	321	3	of	of	ADP
ddj-47	321	4	amino	amino	NOUN
ddj-47	321	5	-	-	PUNCT
ddj-47	321	6	acids	acid	NOUN
ddj-47	321	7	to	to	PART
ddj-47	321	8	hydrophobic	hydrophobic	NOUN
ddj-47	321	9	resp	resp	NOUN
ddj-47	321	10	.	.	PUNCT
ddj-47	322	1	non	non	ADJ
ddj-47	322	2	-	-	ADJ
ddj-47	322	3	hydrophobic	hydrophobic	ADJ
ddj-47	322	4	ones	one	NOUN
ddj-47	322	5	corresponds	correspond	VERB
ddj-47	322	6	to	to	ADP
ddj-47	322	7	the	the	DET
ddj-47	322	8	assignment	assignment	NOUN
ddj-47	322	9	of	of	ADP
ddj-47	322	10	quarks	quarks	PROPN
ddj-47	322	11	to	to	ADP
ddj-47	322	12	a	a	PRON
ddj-47	322	13	and	and	CCONJ
ddj-47	322	14	g	g	NOUN
ddj-47	322	15	and	and	CCONJ
ddj-47	322	16	antiquarks	antiquarks	PROPN
ddj-47	322	17	to	to	ADP
ddj-47	322	18	t	t	PROPN
ddj-47	322	19	and	and	CCONJ
ddj-47	322	20	c	c	NOUN
ddj-47	322	21	so	so	ADV
ddj-47	322	22	that	that	SCONJ
ddj-47	322	23	strong	strong	ADJ
ddj-47	322	24	matter	matter	NOUN
ddj-47	322	25	antimatter	antimatter	NOUN
ddj-47	322	26	asymmetry	asymmetry	NOUN
ddj-47	322	27	is	be	AUX
ddj-47	322	28	in	in	ADP
ddj-47	322	29	question	question	NOUN
ddj-47	322	30	.	.	PUNCT
ddj-47	323	1	similar	similar	ADJ
ddj-47	323	2	asymmetry	asymmetry	NOUN
ddj-47	323	3	appears	appear	VERB
ddj-47	323	4	in	in	ADP
ddj-47	323	5	cosmology	cosmology	NOUN
ddj-47	323	6	:	:	PUNCT
ddj-47	323	7	in	in	SCONJ
ddj-47	323	8	tgd	tgd	PROPN
ddj-47	323	9	universe	universe	NOUN
ddj-47	323	10	antimatter	antimatter	NOUN
ddj-47	323	11	resides	reside	VERB
ddj-47	323	12	inside	inside	ADP
ddj-47	323	13	cosmic	cosmic	ADJ
ddj-47	323	14	strings	string	NOUN
ddj-47	323	15	in	in	ADP
ddj-47	323	16	the	the	DET
ddj-47	323	17	interior	interior	NOUN
ddj-47	323	18	of	of	ADP
ddj-47	323	19	big	big	ADJ
ddj-47	323	20	voids	void	NOUN
ddj-47	323	21	containing	contain	VERB
ddj-47	323	22	matter	matter	NOUN
ddj-47	323	23	as	as	ADP
ddj-47	323	24	galaxies	galaxy	NOUN
ddj-47	323	25	at	at	ADP
ddj-47	323	26	their	their	PRON
ddj-47	323	27	boundaries	boundary	NOUN
ddj-47	323	28	so	so	SCONJ
ddj-47	323	29	that	that	SCONJ
ddj-47	323	30	one	one	PRON
ddj-47	323	31	can	can	AUX
ddj-47	323	32	understand	understand	VERB
ddj-47	323	33	why	why	SCONJ
ddj-47	323	34	antimatter	antimatter	NOUN
ddj-47	323	35	is	be	AUX
ddj-47	323	36	not	not	PART
ddj-47	323	37	visible	visible	ADJ
ddj-47	323	38	.	.	PUNCT
ddj-47	324	1	3.2.2	3.2.2	NUM
ddj-47	324	2	flux	flux	NOUN
ddj-47	324	3	tubes	tube	NOUN
ddj-47	324	4	can	can	AUX
ddj-47	324	5	connect	connect	VERB
ddj-47	324	6	with	with	ADP
ddj-47	324	7	all	all	DET
ddj-47	324	8	electronegative	electronegative	ADJ
ddj-47	324	9	atoms	atom	NOUN
ddj-47	324	10	the	the	DET
ddj-47	324	11	model	model	NOUN
ddj-47	324	12	for	for	ADP
ddj-47	324	13	dinucleotide	dinucleotide	NOUN
ddj-47	324	14	precursor	precursor	NOUN
ddj-47	324	15	code	code	NOUN
ddj-47	325	1	[	[	X
ddj-47	325	2	16	16	NUM
ddj-47	325	3	]	]	PUNCT
ddj-47	325	4	involves	involve	VERB
ddj-47	325	5	precursors	precursor	NOUN
ddj-47	325	6	for	for	ADP
ddj-47	325	7	which	which	PRON
ddj-47	325	8	3	3	NUM
ddj-47	325	9	precursors	precursor	NOUN
ddj-47	325	10	contain	contain	VERB
ddj-47	325	11	only	only	ADV
ddj-47	325	12	oxygen	oxygen	NOUN
ddj-47	325	13	ions	ion	NOUN
ddj-47	325	14	or	or	CCONJ
ddj-47	325	15	double	double	ADJ
ddj-47	325	16	bonded	bond	VERB
ddj-47	325	17	oxygens	oxygen	NOUN
ddj-47	325	18	.	.	PUNCT
ddj-47	326	1	the	the	DET
ddj-47	326	2	only	only	ADJ
ddj-47	326	3	possible	possible	ADJ
ddj-47	326	4	conclusion	conclusion	NOUN
ddj-47	326	5	is	be	AUX
ddj-47	326	6	that	that	SCONJ
ddj-47	326	7	oxygen	oxygen	NOUN
ddj-47	326	8	can	can	AUX
ddj-47	326	9	connect	connect	VERB
ddj-47	326	10	to	to	ADP
ddj-47	326	11	any	any	DET
ddj-47	326	12	dna	dna	PROPN
ddj-47	326	13	letter	letter	NOUN
ddj-47	326	14	(	(	PUNCT
ddj-47	326	15	quark	quark	NOUN
ddj-47	326	16	or	or	CCONJ
ddj-47	326	17	antiquark	antiquark	NOUN
ddj-47	326	18	)	)	PUNCT
ddj-47	326	19	and	and	CCONJ
ddj-47	326	20	that	that	DET
ddj-47	326	21	first	first	ADJ
ddj-47	326	22	letter	letter	NOUN
ddj-47	326	23	-	-	PUNCT
ddj-47	326	24	precursor	precursor	NOUN
ddj-47	326	25	correlation	correlation	NOUN
ddj-47	326	26	is	be	AUX
ddj-47	326	27	a	a	DET
ddj-47	326	28	selection	selection	NOUN
ddj-47	326	29	of	of	ADP
ddj-47	326	30	the	the	DET
ddj-47	326	31	most	most	ADV
ddj-47	326	32	probable	probable	ADJ
ddj-47	326	33	alternative	alternative	NOUN
ddj-47	326	34	.	.	PUNCT
ddj-47	327	1	also	also	ADV
ddj-47	327	2	in	in	ADP
ddj-47	327	3	water	water	NOUN
ddj-47	327	4	oxygen	oxygen	NOUN
ddj-47	327	5	atoms	atom	NOUN
ddj-47	327	6	should	should	AUX
ddj-47	327	7	form	form	VERB
ddj-47	327	8	flux	flux	NOUN
ddj-47	327	9	tube	tube	NOUN
ddj-47	327	10	contacts	contact	NOUN
ddj-47	327	11	with	with	ADP
ddj-47	327	12	each	each	DET
ddj-47	327	13	other	other	ADJ
ddj-47	327	14	and	and	CCONJ
ddj-47	327	15	amino	amino	NOUN
ddj-47	327	16	-	-	PUNCT
ddj-47	327	17	acids	acid	NOUN
ddj-47	327	18	and	and	CCONJ
ddj-47	327	19	dna	dna	PROPN
ddj-47	327	20	.	.	PUNCT
ddj-47	328	1	also	also	ADV
ddj-47	328	2	nitrogen	nitrogen	NOUN
ddj-47	328	3	atoms	atom	NOUN
ddj-47	328	4	might	might	AUX
ddj-47	328	5	form	form	VERB
ddj-47	328	6	similar	similar	ADJ
ddj-47	328	7	flux	flux	NOUN
ddj-47	328	8	tube	tube	NOUN
ddj-47	328	9	connections	connection	NOUN
ddj-47	328	10	and	and	CCONJ
ddj-47	328	11	this	this	PRON
ddj-47	328	12	was	be	AUX
ddj-47	328	13	assumed	assume	VERB
ddj-47	328	14	in	in	ADP
ddj-47	328	15	the	the	DET
ddj-47	328	16	model	model	NOUN
ddj-47	328	17	.	.	PUNCT
ddj-47	329	1	same	same	ADJ
ddj-47	329	2	would	would	AUX
ddj-47	329	3	apply	apply	VERB
ddj-47	329	4	to	to	ADP
ddj-47	329	5	sulphur	sulphur	NOUN
ddj-47	329	6	appearing	appear	VERB
ddj-47	329	7	in	in	ADP
ddj-47	329	8	met	meet	VERB
ddj-47	329	9	and	and	CCONJ
ddj-47	329	10	tyr	tyr	PROPN
ddj-47	329	11	and	and	CCONJ
ddj-47	329	12	to	to	ADP
ddj-47	329	13	electronegative	electronegative	ADJ
ddj-47	329	14	atoms	atom	NOUN
ddj-47	329	15	in	in	ADP
ddj-47	329	16	general	general	ADJ
ddj-47	329	17	.	.	PUNCT
ddj-47	330	1	3.2.3	3.2.3	NUM
ddj-47	330	2	what	what	PRON
ddj-47	330	3	can	can	AUX
ddj-47	330	4	one	one	PRON
ddj-47	330	5	learn	learn	VERB
ddj-47	330	6	from	from	ADP
ddj-47	330	7	the	the	DET
ddj-47	330	8	formation	formation	NOUN
ddj-47	330	9	of	of	ADP
ddj-47	330	10	alpha	alpha	ADJ
ddj-47	330	11	helices	helix	NOUN
ddj-47	330	12	and	and	CCONJ
ddj-47	330	13	beta	beta	NOUN
ddj-47	330	14	sheets	sheet	NOUN
ddj-47	330	15	?	?	PUNCT
ddj-47	331	1	assume	assume	VERB
ddj-47	331	2	that	that	SCONJ
ddj-47	331	3	hydrogen	hydrogen	NOUN
ddj-47	331	4	bonds	bond	NOUN
ddj-47	331	5	correspond	correspond	VERB
ddj-47	331	6	to	to	PART
ddj-47	331	7	flux	flux	VERB
ddj-47	331	8	tubes	tube	NOUN
ddj-47	331	9	.	.	PUNCT
ddj-47	332	1	the	the	DET
ddj-47	332	2	formation	formation	NOUN
ddj-47	332	3	of	of	ADP
ddj-47	332	4	peptide	peptide	ADJ
ddj-47	332	5	bonds	bond	NOUN
ddj-47	332	6	by	by	ADP
ddj-47	332	7	the	the	DET
ddj-47	332	8	elimination	elimination	NOUN
ddj-47	332	9	of	of	ADP
ddj-47	332	10	h2o	h2o	NOUN
ddj-47	332	11	-	-	PUNCT
ddj-47	332	12	molecules	molecule	NOUN
ddj-47	332	13	and	and	CCONJ
ddj-47	332	14	generation	generation	NOUN
ddj-47	332	15	of	of	ADP
ddj-47	332	16	hydrogen	hydrogen	NOUN
ddj-47	332	17	bonds	bond	NOUN
ddj-47	332	18	between	between	ADP
ddj-47	332	19	n	n	NOUN
ddj-47	332	20	−	−	PROPN
ddj-47	332	21	h	h	NOUN
ddj-47	332	22	and	and	CCONJ
ddj-47	332	23	o	o	NOUN
ddj-47	332	24	=	=	PUNCT
ddj-47	332	25	is	be	AUX
ddj-47	332	26	an	an	DET
ddj-47	332	27	essential	essential	ADJ
ddj-47	332	28	step	step	NOUN
ddj-47	332	29	in	in	ADP
ddj-47	332	30	the	the	DET
ddj-47	332	31	formation	formation	NOUN
ddj-47	332	32	of	of	ADP
ddj-47	332	33	alpha	alpha	ADJ
ddj-47	332	34	helices	helix	NOUN
ddj-47	332	35	and	and	CCONJ
ddj-47	332	36	beta	beta	NOUN
ddj-47	332	37	sheets	sheet	NOUN
ddj-47	332	38	.	.	PUNCT
ddj-47	333	1	second	second	ADJ
ddj-47	333	2	observation	observation	NOUN
ddj-47	333	3	is	be	AUX
ddj-47	333	4	that	that	SCONJ
ddj-47	333	5	free	free	ADJ
ddj-47	333	6	amino	amino	NOUN
ddj-47	333	7	-	-	PUNCT
ddj-47	333	8	acids	acids	NOUN
ddj-47	333	9	decompose	decompose	NOUN
ddj-47	333	10	naturally	naturally	ADV
ddj-47	333	11	into	into	ADP
ddj-47	333	12	three	three	NUM
ddj-47	333	13	parts	part	NOUN
ddj-47	333	14	corresponding	correspond	VERB
ddj-47	333	15	to	to	ADP
ddj-47	333	16	o	o	NOUN
ddj-47	333	17	=	=	X
ddj-47	333	18	coh	coh	NOUN
ddj-47	333	19	,	,	PUNCT
ddj-47	333	20	r	r	NOUN
ddj-47	333	21	,	,	PUNCT
ddj-47	333	22	and	and	CCONJ
ddj-47	333	23	nh2	nh2	PROPN
ddj-47	333	24	.	.	PUNCT
ddj-47	334	1	one	one	PRON
ddj-47	334	2	can	can	AUX
ddj-47	334	3	also	also	ADV
ddj-47	334	4	count	count	VERB
ddj-47	334	5	o	o	NOUN
ddj-47	335	1	=	=	PUNCT
ddj-47	336	1	as	as	ADP
ddj-47	336	2	a	a	DET
ddj-47	336	3	separate	separate	ADJ
ddj-47	336	4	unit	unit	NOUN
ddj-47	336	5	so	so	SCONJ
ddj-47	336	6	that	that	SCONJ
ddj-47	336	7	there	there	PRON
ddj-47	336	8	would	would	AUX
ddj-47	336	9	be	be	AUX
ddj-47	336	10	four	four	NUM
ddj-47	336	11	units	unit	NOUN
ddj-47	336	12	in	in	ADP
ddj-47	336	13	this	this	DET
ddj-47	336	14	case	case	NOUN
ddj-47	336	15	.	.	PUNCT
ddj-47	337	1	this	this	PRON
ddj-47	337	2	suggests	suggest	VERB
ddj-47	337	3	that	that	SCONJ
ddj-47	337	4	amino	amino	NOUN
ddj-47	337	5	-	-	PUNCT
ddj-47	337	6	acid	acid	NOUN
ddj-47	337	7	could	could	AUX
ddj-47	337	8	correspond	correspond	VERB
ddj-47	337	9	to	to	ADP
ddj-47	337	10	the	the	DET
ddj-47	337	11	entire	entire	ADJ
ddj-47	337	12	dna	dna	NOUN
ddj-47	337	13	codon	codon	NOUN
ddj-47	337	14	xy	xy	PROPN
ddj-47	338	1	z	z	NOUN
ddj-47	338	2	coding	code	VERB
ddj-47	338	3	for	for	ADP
ddj-47	338	4	it	it	PRON
ddj-47	338	5	.	.	PUNCT
ddj-47	339	1	in	in	ADP
ddj-47	339	2	this	this	DET
ddj-47	339	3	case	case	NOUN
ddj-47	339	4	there	there	PRON
ddj-47	339	5	would	would	AUX
ddj-47	339	6	be	be	AUX
ddj-47	339	7	2	2	NUM
ddj-47	339	8	flux	flux	NOUN
ddj-47	339	9	tubes	tube	NOUN
ddj-47	339	10	per	per	ADP
ddj-47	339	11	amino	amino	NOUN
ddj-47	339	12	-	-	PUNCT
ddj-47	339	13	acid	acid	NOUN
ddj-47	339	14	and	and	CCONJ
ddj-47	339	15	one	one	NOUN
ddj-47	339	16	can	can	AUX
ddj-47	339	17	consider	consider	VERB
ddj-47	339	18	the	the	DET
ddj-47	339	19	following	follow	VERB
ddj-47	339	20	options	option	NOUN
ddj-47	339	21	.	.	PUNCT
ddj-47	340	1	1	1	X
ddj-47	340	2	.	.	X
ddj-47	340	3	y	y	PROPN
ddj-47	340	4	could	could	AUX
ddj-47	340	5	correspond	correspond	VERB
ddj-47	340	6	to	to	ADP
ddj-47	340	7	either	either	PRON
ddj-47	340	8	r	r	NOUN
ddj-47	340	9	or	or	CCONJ
ddj-47	340	10	o	o	NOUN
ddj-47	341	1	=	=	NOUN
ddj-47	341	2	.	.	PUNCT
ddj-47	342	1	if	if	SCONJ
ddj-47	342	2	hydrogen	hydrogen	NOUN
ddj-47	342	3	bonds	bond	NOUN
ddj-47	342	4	correspond	correspond	VERB
ddj-47	342	5	to	to	PART
ddj-47	342	6	flux	flux	VERB
ddj-47	342	7	tubes	tube	NOUN
ddj-47	342	8	,	,	PUNCT
ddj-47	342	9	r	r	NOUN
ddj-47	342	10	−	−	PROPN
ddj-47	342	11	y	y	PROPN
ddj-47	342	12	correspondence	correspondence	NOUN
ddj-47	342	13	is	be	AUX
ddj-47	342	14	not	not	PART
ddj-47	342	15	realistic	realistic	ADJ
ddj-47	342	16	.	.	PUNCT
ddj-47	343	1	the	the	DET
ddj-47	343	2	reason	reason	NOUN
ddj-47	343	3	is	be	AUX
ddj-47	343	4	that	that	SCONJ
ddj-47	343	5	r	r	NOUN
ddj-47	343	6	should	should	AUX
ddj-47	343	7	be	be	AUX
ddj-47	343	8	either	either	CCONJ
ddj-47	343	9	donor	donor	NOUN
ddj-47	343	10	or	or	CCONJ
ddj-47	343	11	accept	accept	VERB
ddj-47	343	12	and	and	CCONJ
ddj-47	343	13	hydrophobic	hydrophobic	VERB
ddj-47	343	14	amino	amino	NOUN
ddj-47	343	15	-	-	PUNCT
ddj-47	343	16	acids	acid	NOUN
ddj-47	343	17	do	do	AUX
ddj-47	343	18	not	not	PART
ddj-47	343	19	possess	possess	VERB
ddj-47	343	20	neither	neither	DET
ddj-47	343	21	property	property	NOUN
ddj-47	343	22	.	.	PUNCT
ddj-47	344	1	hence	hence	ADV
ddj-47	344	2	only	only	ADV
ddj-47	344	3	o	o	NOUN
ddj-47	344	4	=	=	PRON
ddj-47	344	5	can	can	AUX
ddj-47	344	6	corresponds	correspond	VERB
ddj-47	344	7	to	to	ADP
ddj-47	344	8	y	y	PROPN
ddj-47	344	9	.	.	PUNCT
ddj-47	345	1	2	2	X
ddj-47	345	2	.	.	NUM
ddj-47	345	3	o	o	NOUN
ddj-47	346	1	−	−	PROPN
ddj-47	346	2	h	h	NOUN
ddj-47	346	3	could	could	AUX
ddj-47	346	4	correspond	correspond	VERB
ddj-47	346	5	to	to	ADP
ddj-47	346	6	z	z	PROPN
ddj-47	346	7	,	,	PUNCT
ddj-47	346	8	o	o	NOUN
ddj-47	347	1	=	=	PUNCT
ddj-47	347	2	to	to	ADP
ddj-47	347	3	y	y	PROPN
ddj-47	347	4	,	,	PUNCT
ddj-47	347	5	and	and	CCONJ
ddj-47	347	6	nh2	nh2	NOUN
ddj-47	347	7	to	to	PART
ddj-47	347	8	x.	x.	VERB
ddj-47	347	9	for	for	ADP
ddj-47	347	10	this	this	DET
ddj-47	347	11	option	option	NOUN
ddj-47	347	12	the	the	DET
ddj-47	347	13	amino	amino	NOUN
ddj-47	347	14	-	-	PUNCT
ddj-47	347	15	acid	acid	NOUN
ddj-47	347	16	in	in	ADP
ddj-47	347	17	protein	protein	NOUN
ddj-47	347	18	would	would	AUX
ddj-47	347	19	correspond	correspond	VERB
ddj-47	347	20	to	to	ADP
ddj-47	347	21	xy	xy	PROPN
ddj-47	347	22	.	.	PUNCT
ddj-47	348	1	if	if	SCONJ
ddj-47	348	2	one	one	PRON
ddj-47	348	3	identifies	identify	VERB
ddj-47	348	4	hydrogen	hydrogen	NOUN
ddj-47	348	5	bonds	bond	NOUN
ddj-47	348	6	as	as	ADP
ddj-47	348	7	special	special	ADJ
ddj-47	348	8	case	case	NOUN
ddj-47	348	9	of	of	ADP
ddj-47	348	10	flux	flux	PROPN
ddj-47	348	11	tubes	tubes	PROPN
ddj-47	348	12	,	,	PUNCT
ddj-47	348	13	the	the	DET
ddj-47	348	14	hydrogen	hydrogen	NOUN
ddj-47	348	15	bonds	bond	NOUN
ddj-47	348	16	of	of	ADP
ddj-47	348	17	alpha	alpha	ADJ
ddj-47	348	18	helix	helix	NOUN
ddj-47	348	19	would	would	AUX
ddj-47	348	20	obey	obey	VERB
ddj-47	348	21	x	x	X
ddj-47	348	22	−	−	NOUN
ddj-47	348	23	yc	yc	NOUN
ddj-47	348	24	rule	rule	NOUN
ddj-47	348	25	which	which	PRON
ddj-47	348	26	seems	seem	VERB
ddj-47	348	27	too	too	ADV
ddj-47	348	28	restrictive	restrictive	ADJ
ddj-47	348	29	.	.	PUNCT
ddj-47	349	1	3	3	X
ddj-47	349	2	.	.	X
ddj-47	350	1	o	o	PROPN
ddj-47	350	2	−h	−h	ADV
ddj-47	350	3	could	could	AUX
ddj-47	350	4	correspond	correspond	VERB
ddj-47	350	5	to	to	ADP
ddj-47	350	6	x	x	PRON
ddj-47	350	7	,	,	PUNCT
ddj-47	350	8	r	r	NOUN
ddj-47	350	9	or	or	CCONJ
ddj-47	350	10	o	o	NOUN
ddj-47	350	11	=	=	PUNCT
ddj-47	350	12	to	to	ADP
ddj-47	350	13	y	y	PROPN
ddj-47	350	14	,	,	PUNCT
ddj-47	350	15	and	and	CCONJ
ddj-47	350	16	nh2	nh2	PROPN
ddj-47	350	17	to	to	AUX
ddj-47	350	18	z.	z.	PROPN
ddj-47	350	19	for	for	ADP
ddj-47	350	20	this	this	DET
ddj-47	350	21	option	option	NOUN
ddj-47	350	22	the	the	DET
ddj-47	350	23	amino	amino	NOUN
ddj-47	350	24	-	-	PUNCT
ddj-47	350	25	acid	acid	NOUN
ddj-47	350	26	in	in	ADP
ddj-47	350	27	protein	protein	NOUN
ddj-47	350	28	would	would	AUX
ddj-47	350	29	correspond	correspond	VERB
ddj-47	350	30	to	to	ADP
ddj-47	350	31	y	y	PROPN
ddj-47	350	32	z.	z.	PROPN
ddj-47	351	1	in	in	ADP
ddj-47	351	2	this	this	DET
ddj-47	351	3	case	case	NOUN
ddj-47	351	4	the	the	DET
ddj-47	351	5	hydrogen	hydrogen	NOUN
ddj-47	351	6	bond	bond	NOUN
ddj-47	351	7	of	of	ADP
ddj-47	351	8	alpha	alpha	ADJ
ddj-47	351	9	helix	helix	NOUN
ddj-47	351	10	would	would	AUX
ddj-47	351	11	obey	obey	VERB
ddj-47	351	12	y	y	NOUN
ddj-47	351	13	=	=	PUNCT
ddj-47	351	14	zc	zc	PROPN
ddj-47	351	15	rule	rule	NOUN
ddj-47	351	16	which	which	PRON
ddj-47	351	17	by	by	ADP
ddj-47	351	18	the	the	DET
ddj-47	351	19	isospin	isospin	PROPN
ddj-47	351	20	symmetry	symmetry	NOUN
ddj-47	351	21	of	of	ADP
ddj-47	351	22	the	the	DET
ddj-47	351	23	last	last	ADJ
ddj-47	351	24	nucleotide	nucleotide	NOUN
ddj-47	351	25	of	of	ADP
ddj-47	351	26	the	the	DET
ddj-47	351	27	codon	codon	NOUN
ddj-47	351	28	might	might	AUX
ddj-47	351	29	be	be	AUX
ddj-47	351	30	flexible	flexible	ADJ
ddj-47	351	31	enough	enough	ADV
ddj-47	351	32	.	.	PUNCT
ddj-47	352	1	issn	issn	PROPN
ddj-47	352	2	:	:	PUNCT
ddj-47	352	3	2159	2159	NUM
ddj-47	352	4	-	-	SYM
ddj-47	352	5	0465	0465	NUM
ddj-47	352	6	dna	dna	PROPN
ddj-47	352	7	decipher	decipher	PROPN
ddj-47	352	8	journal	journal	PROPN
ddj-47	352	9	june	june	PROPN
ddj-47	352	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	352	11	published	publish	VERB
ddj-47	352	12	by	by	ADP
ddj-47	352	13	quantumdream	quantumdream	PROPN
ddj-47	352	14	,	,	PUNCT
ddj-47	352	15	inc	inc	PROPN
ddj-47	352	16	.	.	PROPN
ddj-47	352	17	dna	dna	PROPN
ddj-47	352	18	decipher	decipher	PROPN
ddj-47	352	19	journal	journal	NOUN
ddj-47	353	1	|	|	ADV
ddj-47	353	2	may	may	AUX
ddj-47	353	3	2013	2013	NUM
ddj-47	353	4	|	|	ADV
ddj-47	353	5	volume	volume	NOUN
ddj-47	353	6	3	3	NUM
ddj-47	353	7	|	|	NOUN
ddj-47	353	8	issue	issue	VERB
ddj-47	353	9	1	1	NUM
ddj-47	353	10	|	|	ADV
ddj-47	353	11	pp	pp	ADJ
ddj-47	353	12	.	.	PUNCT
ddj-47	354	1	58	58	NUM
ddj-47	354	2	-	-	SYM
ddj-47	354	3	88	88	NUM
ddj-47	354	4	69	69	NUM
ddj-47	354	5	pitkänen	pitkänen	NOUN
ddj-47	354	6	,	,	PUNCT
ddj-47	354	7	m.	m.	NOUN
ddj-47	354	8	,	,	PUNCT
ddj-47	354	9	a	a	DET
ddj-47	354	10	model	model	NOUN
ddj-47	354	11	for	for	ADP
ddj-47	354	12	protein	protein	NOUN
ddj-47	354	13	folding	folding	NOUN
ddj-47	354	14	and	and	CCONJ
ddj-47	354	15	biocatalysis	biocatalysis	NOUN
ddj-47	354	16	3.2.4	3.2.4	NUM
ddj-47	354	17	interactions	interaction	NOUN
ddj-47	354	18	of	of	ADP
ddj-47	354	19	proteins	protein	NOUN
ddj-47	354	20	with	with	ADP
ddj-47	354	21	ions	ion	NOUN
ddj-47	354	22	and	and	CCONJ
ddj-47	354	23	electrons	electron	NOUN
ddj-47	354	24	proteins	protein	NOUN
ddj-47	354	25	interact	interact	VERB
ddj-47	354	26	also	also	ADV
ddj-47	354	27	with	with	ADP
ddj-47	354	28	electrons	electron	NOUN
ddj-47	354	29	and	and	CCONJ
ddj-47	354	30	ions	ion	NOUN
ddj-47	354	31	.	.	PUNCT
ddj-47	355	1	typical	typical	ADJ
ddj-47	355	2	process	process	NOUN
ddj-47	355	3	are	be	AUX
ddj-47	355	4	the	the	DET
ddj-47	355	5	addition	addition	NOUN
ddj-47	355	6	or	or	CCONJ
ddj-47	355	7	removal	removal	NOUN
ddj-47	355	8	of	of	ADP
ddj-47	355	9	proton	proton	NOUN
ddj-47	355	10	,	,	PUNCT
ddj-47	355	11	electron	electron	NOUN
ddj-47	355	12	,	,	PUNCT
ddj-47	355	13	ion	ion	NOUN
ddj-47	355	14	such	such	ADJ
ddj-47	355	15	ca++	ca++	NOUN
ddj-47	355	16	,	,	PUNCT
ddj-47	355	17	or	or	CCONJ
ddj-47	355	18	molecule	molecule	NOUN
ddj-47	355	19	such	such	ADJ
ddj-47	355	20	as	as	ADP
ddj-47	355	21	o2	o2	PROPN
ddj-47	355	22	.	.	PUNCT
ddj-47	356	1	these	these	DET
ddj-47	356	2	interactions	interaction	NOUN
ddj-47	356	3	are	be	AUX
ddj-47	356	4	not	not	PART
ddj-47	356	5	well	well	ADV
ddj-47	356	6	understood	understand	VERB
ddj-47	356	7	.	.	PUNCT
ddj-47	357	1	for	for	ADP
ddj-47	357	2	instance	instance	NOUN
ddj-47	357	3	,	,	PUNCT
ddj-47	357	4	the	the	DET
ddj-47	357	5	interactions	interaction	NOUN
ddj-47	357	6	involve	involve	VERB
ddj-47	357	7	the	the	DET
ddj-47	357	8	transfer	transfer	NOUN
ddj-47	357	9	of	of	ADP
ddj-47	357	10	electrons	electron	NOUN
ddj-47	357	11	between	between	ADP
ddj-47	357	12	ligand	ligand	ADJ
ddj-47	357	13	protein	protein	NOUN
ddj-47	357	14	and	and	CCONJ
ddj-47	357	15	protein	protein	NOUN
ddj-47	357	16	inducing	induce	VERB
ddj-47	357	17	oxidation	oxidation	NOUN
ddj-47	357	18	(	(	PUNCT
ddj-47	357	19	electron	electron	NOUN
ddj-47	357	20	is	be	AUX
ddj-47	357	21	given	give	VERB
ddj-47	357	22	)	)	PUNCT
ddj-47	357	23	,	,	PUNCT
ddj-47	357	24	reduction	reduction	NOUN
ddj-47	357	25	(	(	PUNCT
ddj-47	357	26	electron	electron	NOUN
ddj-47	357	27	is	be	AUX
ddj-47	357	28	received	receive	VERB
ddj-47	357	29	)	)	PUNCT
ddj-47	357	30	or	or	CCONJ
ddj-47	357	31	redox	redox	NOUN
ddj-47	357	32	reaction	reaction	NOUN
ddj-47	357	33	(	(	PUNCT
ddj-47	357	34	both	both	CCONJ
ddj-47	357	35	reduction	reduction	NOUN
ddj-47	357	36	and	and	CCONJ
ddj-47	357	37	oxidation	oxidation	NOUN
ddj-47	357	38	take	take	NOUN
ddj-47	357	39	place	place	NOUN
ddj-47	357	40	)	)	PUNCT
ddj-47	357	41	.	.	PUNCT
ddj-47	358	1	in	in	ADP
ddj-47	358	2	metabolism	metabolism	NOUN
ddj-47	358	3	redox	redox	NOUN
ddj-47	358	4	process	process	NOUN
ddj-47	358	5	is	be	AUX
ddj-47	358	6	central	central	ADJ
ddj-47	358	7	.	.	PUNCT
ddj-47	359	1	these	these	DET
ddj-47	359	2	reactions	reaction	NOUN
ddj-47	359	3	are	be	AUX
ddj-47	359	4	reversible	reversible	ADJ
ddj-47	359	5	and	and	CCONJ
ddj-47	359	6	it	it	PRON
ddj-47	359	7	is	be	AUX
ddj-47	359	8	difficult	difficult	ADJ
ddj-47	359	9	to	to	PART
ddj-47	359	10	understand	understand	VERB
ddj-47	359	11	how	how	SCONJ
ddj-47	359	12	electrons	electron	NOUN
ddj-47	359	13	are	be	AUX
ddj-47	359	14	able	able	ADJ
ddj-47	359	15	make	make	VERB
ddj-47	359	16	their	their	PRON
ddj-47	359	17	long	long	ADJ
ddj-47	359	18	journey	journey	NOUN
ddj-47	359	19	from	from	ADP
ddj-47	359	20	the	the	DET
ddj-47	359	21	interior	interior	NOUN
ddj-47	359	22	of	of	ADP
ddj-47	359	23	the	the	DET
ddj-47	359	24	ligand	ligand	NOUN
ddj-47	359	25	so	so	ADV
ddj-47	359	26	fast	fast	ADV
ddj-47	359	27	and	and	CCONJ
ddj-47	359	28	avoiding	avoid	VERB
ddj-47	359	29	dissipative	dissipative	ADJ
ddj-47	359	30	effects	effect	NOUN
ddj-47	359	31	.	.	PUNCT
ddj-47	360	1	the	the	DET
ddj-47	360	2	formation	formation	NOUN
ddj-47	360	3	of	of	ADP
ddj-47	360	4	cyclotron	cyclotron	NOUN
ddj-47	360	5	bose	bose	NOUN
ddj-47	360	6	-	-	PUNCT
ddj-47	360	7	einstein	einstein	NOUN
ddj-47	360	8	condensates	condensate	NOUN
ddj-47	360	9	of	of	ADP
ddj-47	360	10	bosonic	bosonic	NOUN
ddj-47	360	11	ions	ion	NOUN
ddj-47	360	12	and	and	CCONJ
ddj-47	360	13	electronic	electronic	ADJ
ddj-47	360	14	cooper	cooper	NOUN
ddj-47	360	15	pair	pair	NOUN
ddj-47	360	16	condensates	condensate	NOUN
ddj-47	360	17	at	at	ADP
ddj-47	360	18	the	the	DET
ddj-47	360	19	magnetic	magnetic	ADJ
ddj-47	360	20	flux	flux	PROPN
ddj-47	360	21	tubes	tube	NOUN
ddj-47	360	22	connecting	connect	VERB
ddj-47	360	23	ligand	ligand	NOUN
ddj-47	360	24	and	and	CCONJ
ddj-47	360	25	protein	protein	NOUN
ddj-47	360	26	might	might	AUX
ddj-47	360	27	provide	provide	VERB
ddj-47	360	28	the	the	DET
ddj-47	360	29	solution	solution	NOUN
ddj-47	360	30	of	of	ADP
ddj-47	360	31	the	the	DET
ddj-47	360	32	mystery	mystery	NOUN
ddj-47	360	33	.	.	PUNCT
ddj-47	361	1	note	note	VERB
ddj-47	361	2	that	that	SCONJ
ddj-47	361	3	the	the	DET
ddj-47	361	4	new	new	ADJ
ddj-47	361	5	nuclear	nuclear	ADJ
ddj-47	361	6	physics	physics	NOUN
ddj-47	361	7	predicted	predict	VERB
ddj-47	361	8	by	by	ADP
ddj-47	361	9	tgd	tgd	PROPN
ddj-47	361	10	predicts	predict	VERB
ddj-47	361	11	nuclei	nucleus	NOUN
ddj-47	361	12	which	which	PRON
ddj-47	361	13	can	can	AUX
ddj-47	361	14	have	have	VERB
ddj-47	361	15	anomalous	anomalous	ADJ
ddj-47	361	16	em	em	PRON
ddj-47	361	17	charge	charge	NOUN
ddj-47	361	18	associated	associate	VERB
ddj-47	361	19	with	with	ADP
ddj-47	361	20	the	the	DET
ddj-47	361	21	color	color	NOUN
ddj-47	361	22	fluxtubes	fluxtube	NOUN
ddj-47	361	23	connecting	connect	VERB
ddj-47	361	24	nucleons	nucleon	NOUN
ddj-47	361	25	to	to	ADP
ddj-47	361	26	nuclear	nuclear	ADJ
ddj-47	361	27	string	string	NOUN
ddj-47	361	28	so	so	SCONJ
ddj-47	361	29	that	that	SCONJ
ddj-47	361	30	fermionic	fermionic	NOUN
ddj-47	361	31	ions	ion	NOUN
ddj-47	361	32	na+	na+	NOUN
ddj-47	361	33	,	,	PUNCT
ddj-47	361	34	cl−,k+	cl−,k+	PROPN
ddj-47	361	35	could	could	AUX
ddj-47	361	36	have	have	VERB
ddj-47	361	37	exotic	exotic	ADJ
ddj-47	361	38	bosonic	bosonic	NOUN
ddj-47	361	39	counterparts	counterpart	NOUN
ddj-47	361	40	.	.	PUNCT
ddj-47	362	1	3.3	3.3	NUM
ddj-47	362	2	trying	try	VERB
ddj-47	362	3	to	to	PART
ddj-47	362	4	identify	identify	VERB
ddj-47	362	5	the	the	DET
ddj-47	362	6	folding	fold	VERB
ddj-47	362	7	code	code	NOUN
ddj-47	362	8	the	the	DET
ddj-47	362	9	basic	basic	ADJ
ddj-47	362	10	question	question	NOUN
ddj-47	362	11	is	be	AUX
ddj-47	362	12	what	what	PRON
ddj-47	362	13	kind	kind	NOUN
ddj-47	362	14	of	of	ADP
ddj-47	362	15	generalized	generalized	ADJ
ddj-47	362	16	pairings	pairing	NOUN
ddj-47	362	17	are	be	AUX
ddj-47	362	18	realistic	realistic	ADJ
ddj-47	362	19	for	for	ADP
ddj-47	362	20	amino	amino	NOUN
ddj-47	362	21	-	-	PUNCT
ddj-47	362	22	acids	acid	NOUN
ddj-47	362	23	.	.	PUNCT
ddj-47	363	1	the	the	DET
ddj-47	363	2	identification	identification	NOUN
ddj-47	363	3	of	of	ADP
ddj-47	363	4	hydrogen	hydrogen	NOUN
ddj-47	363	5	bonds	bond	NOUN
ddj-47	363	6	as	as	SCONJ
ddj-47	363	7	flux	flux	NOUN
ddj-47	363	8	tubes	tube	NOUN
ddj-47	363	9	leads	lead	VERB
ddj-47	363	10	to	to	ADP
ddj-47	363	11	rather	rather	ADV
ddj-47	363	12	unique	unique	ADJ
ddj-47	363	13	identification	identification	NOUN
ddj-47	363	14	of	of	ADP
ddj-47	363	15	the	the	DET
ddj-47	363	16	pairing	pairing	NOUN
ddj-47	363	17	and	and	CCONJ
ddj-47	363	18	excludes	exclude	VERB
ddj-47	363	19	the	the	DET
ddj-47	363	20	naively	naively	ADV
ddj-47	363	21	expected	expect	VERB
ddj-47	363	22	y	y	PRON
ddj-47	363	23	−	−	PROPN
ddj-47	363	24	yc	yc	X
ddj-47	363	25	pairing	pair	VERB
ddj-47	363	26	.	.	PUNCT
ddj-47	364	1	3.3.1	3.3.1	NUM
ddj-47	364	2	a	a	DET
ddj-47	364	3	trial	trial	NOUN
ddj-47	364	4	for	for	ADP
ddj-47	364	5	the	the	DET
ddj-47	364	6	folding	fold	VERB
ddj-47	364	7	code	code	NOUN
ddj-47	364	8	protein	protein	NOUN
ddj-47	364	9	folding	fold	VERB
ddj-47	364	10	code	code	NOUN
ddj-47	364	11	is	be	AUX
ddj-47	364	12	something	something	PRON
ddj-47	364	13	which	which	PRON
ddj-47	364	14	is	be	AUX
ddj-47	364	15	expected	expect	VERB
ddj-47	364	16	to	to	PART
ddj-47	364	17	exist	exist	VERB
ddj-47	364	18	but	but	CCONJ
ddj-47	364	19	is	be	AUX
ddj-47	364	20	not	not	PART
ddj-47	364	21	understood	understand	VERB
ddj-47	364	22	[	[	X
ddj-47	364	23	14	14	NUM
ddj-47	364	24	]	]	PUNCT
ddj-47	364	25	.	.	PUNCT
ddj-47	365	1	this	this	PRON
ddj-47	365	2	inspired	inspire	VERB
ddj-47	365	3	a	a	DET
ddj-47	365	4	work	work	NOUN
ddj-47	365	5	which	which	PRON
ddj-47	365	6	led	lead	VERB
ddj-47	365	7	to	to	ADP
ddj-47	365	8	several	several	ADJ
ddj-47	365	9	trials	trial	NOUN
ddj-47	365	10	for	for	ADP
ddj-47	365	11	the	the	DET
ddj-47	365	12	folding	fold	VERB
ddj-47	365	13	code	code	NOUN
ddj-47	365	14	.	.	PUNCT
ddj-47	366	1	also	also	ADV
ddj-47	366	2	a	a	DET
ddj-47	366	3	natural	natural	ADJ
ddj-47	366	4	generalization	generalization	NOUN
ddj-47	366	5	to	to	ADP
ddj-47	366	6	a	a	DET
ddj-47	366	7	code	code	NOUN
ddj-47	366	8	for	for	ADP
ddj-47	366	9	catalysis	catalysis	NOUN
ddj-47	366	10	emerged	emerge	VERB
ddj-47	366	11	.	.	PUNCT
ddj-47	367	1	in	in	ADP
ddj-47	367	2	the	the	DET
ddj-47	367	3	most	most	ADV
ddj-47	367	4	plausible	plausible	ADJ
ddj-47	367	5	candidate	candidate	NOUN
ddj-47	367	6	for	for	ADP
ddj-47	367	7	the	the	DET
ddj-47	367	8	code	code	NOUN
ddj-47	367	9	flux	flux	NOUN
ddj-47	367	10	tubes	tube	NOUN
ddj-47	367	11	are	be	AUX
ddj-47	367	12	identified	identify	VERB
ddj-47	367	13	as	as	ADP
ddj-47	367	14	correlates	correlate	NOUN
ddj-47	367	15	of	of	ADP
ddj-47	367	16	directed	direct	VERB
ddj-47	367	17	attention	attention	NOUN
ddj-47	367	18	at	at	ADP
ddj-47	367	19	molecular	molecular	ADJ
ddj-47	367	20	level	level	NOUN
ddj-47	367	21	.	.	PUNCT
ddj-47	368	1	by	by	ADP
ddj-47	368	2	their	their	PRON
ddj-47	368	3	asymmetry	asymmetry	NOUN
ddj-47	368	4	hydrogen	hydrogen	NOUN
ddj-47	368	5	bonds	bond	NOUN
ddj-47	368	6	are	be	AUX
ddj-47	368	7	identified	identify	VERB
ddj-47	368	8	as	as	ADP
ddj-47	368	9	a	a	DET
ddj-47	368	10	special	special	ADJ
ddj-47	368	11	case	case	NOUN
ddj-47	368	12	of	of	ADP
ddj-47	368	13	flux	flux	PROPN
ddj-47	368	14	tubes	tubes	PROPN
ddj-47	368	15	.	.	PUNCT
ddj-47	369	1	free	free	ADJ
ddj-47	369	2	amino	amino	NOUN
ddj-47	369	3	-	-	PUNCT
ddj-47	369	4	acid	acid	NOUN
ddj-47	369	5	behaves	behave	NOUN
ddj-47	369	6	like	like	ADP
ddj-47	369	7	xcyczc	xcyczc	NOUN
ddj-47	369	8	and	and	CCONJ
ddj-47	369	9	the	the	DET
ddj-47	369	10	amino	amino	NOUN
ddj-47	369	11	-	-	PUNCT
ddj-47	369	12	acid	acid	NOUN
ddj-47	369	13	inside	inside	ADJ
ddj-47	369	14	protein	protein	NOUN
ddj-47	369	15	like	like	ADP
ddj-47	369	16	yczc	yczc	NOUN
ddj-47	369	17	.	.	PUNCT
ddj-47	370	1	there	there	PRON
ddj-47	370	2	are	be	VERB
ddj-47	370	3	two	two	NUM
ddj-47	370	4	flux	flux	NOUN
ddj-47	370	5	tubes	tube	NOUN
ddj-47	370	6	per	per	ADP
ddj-47	370	7	amino	amino	NOUN
ddj-47	370	8	-	-	PUNCT
ddj-47	370	9	acid	acid	NOUN
ddj-47	370	10	corresponding	corresponding	NOUN
ddj-47	370	11	to	to	ADP
ddj-47	370	12	n	n	PRON
ddj-47	370	13	−h	−h	ADJ
ddj-47	370	14	and	and	CCONJ
ddj-47	370	15	o	o	X
ddj-47	370	16	=	=	PUNCT
ddj-47	370	17	representing	represent	VERB
ddj-47	370	18	zc	zc	NOUN
ddj-47	370	19	and	and	CCONJ
ddj-47	370	20	yc	yc	NOUN
ddj-47	370	21	.	.	PUNCT
ddj-47	371	1	this	this	PRON
ddj-47	371	2	leaves	leave	VERB
ddj-47	371	3	two	two	NUM
ddj-47	371	4	options	option	NOUN
ddj-47	371	5	for	for	ADP
ddj-47	371	6	pairing	pair	VERB
ddj-47	371	7	.	.	PUNCT
ddj-47	372	1	1	1	X
ddj-47	372	2	.	.	X
ddj-47	373	1	if	if	SCONJ
ddj-47	373	2	o	o	PROPN
ddj-47	373	3	=	=	PRON
ddj-47	373	4	can	can	AUX
ddj-47	373	5	act	act	VERB
ddj-47	373	6	as	as	ADP
ddj-47	373	7	a	a	DET
ddj-47	373	8	terminal	terminal	NOUN
ddj-47	373	9	for	for	ADP
ddj-47	373	10	hydrogen	hydrogen	NOUN
ddj-47	373	11	bond	bond	NOUN
ddj-47	373	12	and	and	CCONJ
ddj-47	373	13	long	long	ADJ
ddj-47	373	14	flux	flux	NOUN
ddj-47	373	15	tube	tube	NOUN
ddj-47	373	16	then	then	ADV
ddj-47	373	17	n	n	CCONJ
ddj-47	373	18	−h	−h	VERB
ddj-47	373	19	and	and	CCONJ
ddj-47	373	20	y	y	PROPN
ddj-47	373	21	can	can	AUX
ddj-47	373	22	connect	connect	VERB
ddj-47	373	23	simultaneously	simultaneously	ADV
ddj-47	373	24	to	to	ADP
ddj-47	373	25	o	o	NOUN
ddj-47	373	26	=	=	PUNCT
ddj-47	373	27	and	and	CCONJ
ddj-47	373	28	one	one	NUM
ddj-47	373	29	has	have	VERB
ddj-47	373	30	y	y	NOUN
ddj-47	373	31	=	=	SYM
ddj-47	373	32	z	z	NOUN
ddj-47	373	33	pairing	pairing	NOUN
ddj-47	373	34	.	.	PUNCT
ddj-47	374	1	2	2	X
ddj-47	374	2	.	.	X
ddj-47	375	1	if	if	SCONJ
ddj-47	375	2	o	o	PROPN
ddj-47	375	3	=	=	PRON
ddj-47	375	4	can	can	AUX
ddj-47	375	5	act	act	VERB
ddj-47	375	6	as	as	ADP
ddj-47	375	7	a	a	DET
ddj-47	375	8	terminal	terminal	NOUN
ddj-47	375	9	for	for	ADP
ddj-47	375	10	only	only	ADJ
ddj-47	375	11	single	single	ADJ
ddj-47	375	12	flux	flux	NOUN
ddj-47	375	13	tube	tube	NOUN
ddj-47	375	14	representing	represent	VERB
ddj-47	375	15	y	y	PROPN
ddj-47	375	16	then	then	ADV
ddj-47	375	17	reconnection	reconnection	NOUN
ddj-47	375	18	process	process	NOUN
ddj-47	375	19	for	for	ADP
ddj-47	375	20	n	n	NOUN
ddj-47	375	21	−h	−h	ADJ
ddj-47	375	22	and	and	CCONJ
ddj-47	375	23	o	o	X
ddj-47	375	24	=	=	SYM
ddj-47	375	25	flux	flux	NOUN
ddj-47	375	26	tubes	tube	NOUN
ddj-47	375	27	creates	create	VERB
ddj-47	375	28	the	the	DET
ddj-47	375	29	hydrogen	hydrogen	NOUN
ddj-47	375	30	bond	bond	NOUN
ddj-47	375	31	and	and	CCONJ
ddj-47	375	32	y	y	NOUN
ddj-47	375	33	=	=	PUNCT
ddj-47	375	34	zc	zc	PROPN
ddj-47	375	35	pairing	pair	VERB
ddj-47	375	36	for	for	ADP
ddj-47	375	37	amino	amino	NOUN
ddj-47	375	38	-	-	PUNCT
ddj-47	375	39	acids	acid	NOUN
ddj-47	375	40	results	result	NOUN
ddj-47	375	41	both	both	DET
ddj-47	375	42	pairings	pairing	NOUN
ddj-47	375	43	are	be	AUX
ddj-47	375	44	highly	highly	ADV
ddj-47	375	45	flexible	flexible	ADJ
ddj-47	375	46	so	so	SCONJ
ddj-47	375	47	that	that	SCONJ
ddj-47	375	48	obvious	obvious	ADJ
ddj-47	375	49	inconsistencies	inconsistency	NOUN
ddj-47	375	50	with	with	ADP
ddj-47	375	51	the	the	DET
ddj-47	375	52	data	datum	NOUN
ddj-47	375	53	about	about	ADP
ddj-47	375	54	alpha	alpha	NOUN
ddj-47	375	55	helices	helix	NOUN
ddj-47	375	56	and	and	CCONJ
ddj-47	375	57	beta	beta	NOUN
ddj-47	375	58	sheets	sheet	NOUN
ddj-47	375	59	are	be	AUX
ddj-47	375	60	avoided	avoid	VERB
ddj-47	375	61	.	.	PUNCT
ddj-47	376	1	a	a	DET
ddj-47	376	2	highly	highly	ADV
ddj-47	376	3	non	non	ADJ
ddj-47	376	4	-	-	ADJ
ddj-47	376	5	trivial	trivial	ADJ
ddj-47	376	6	and	and	CCONJ
ddj-47	376	7	testable	testable	ADJ
ddj-47	376	8	prediction	prediction	NOUN
ddj-47	376	9	of	of	ADP
ddj-47	376	10	both	both	DET
ddj-47	376	11	pairings	pairing	NOUN
ddj-47	376	12	is	be	AUX
ddj-47	376	13	that	that	SCONJ
ddj-47	376	14	the	the	DET
ddj-47	376	15	two	two	NUM
ddj-47	376	16	identical	identical	ADJ
ddj-47	376	17	proteins	protein	NOUN
ddj-47	376	18	coded	code	VERB
ddj-47	376	19	by	by	ADP
ddj-47	376	20	different	different	ADJ
ddj-47	376	21	dna	dna	PROPN
ddj-47	376	22	sequences	sequence	NOUN
ddj-47	376	23	can	can	AUX
ddj-47	376	24	have	have	VERB
ddj-47	376	25	different	different	ADJ
ddj-47	376	26	foldings	folding	NOUN
ddj-47	376	27	since	since	SCONJ
ddj-47	376	28	the	the	DET
ddj-47	376	29	allowed	allow	VERB
ddj-47	376	30	pairings	pairing	NOUN
ddj-47	376	31	are	be	AUX
ddj-47	376	32	not	not	PART
ddj-47	376	33	identical	identical	ADJ
ddj-47	376	34	.	.	PUNCT
ddj-47	377	1	thus	thus	ADV
ddj-47	377	2	amino	amino	NOUN
ddj-47	377	3	-	-	PUNCT
ddj-47	377	4	acids	acid	NOUN
ddj-47	377	5	would	would	AUX
ddj-47	377	6	remember	remember	VERB
ddj-47	377	7	at	at	ADP
ddj-47	377	8	the	the	DET
ddj-47	377	9	level	level	NOUN
ddj-47	377	10	of	of	ADP
ddj-47	377	11	the	the	DET
ddj-47	377	12	braidings	braiding	NOUN
ddj-47	377	13	which	which	PRON
ddj-47	377	14	dna	dna	NOUN
ddj-47	377	15	sequence	sequence	NOUN
ddj-47	377	16	coded	code	VERB
ddj-47	377	17	them	they	PRON
ddj-47	377	18	.	.	PUNCT
ddj-47	378	1	this	this	DET
ddj-47	378	2	prediction	prediction	NOUN
ddj-47	378	3	can	can	AUX
ddj-47	378	4	be	be	AUX
ddj-47	378	5	avoided	avoid	VERB
ddj-47	378	6	only	only	ADV
ddj-47	378	7	z	z	NOUN
ddj-47	378	8	flux	flux	NOUN
ddj-47	378	9	tube	tube	NOUN
ddj-47	378	10	corresponds	correspond	VERB
ddj-47	378	11	to	to	ADP
ddj-47	378	12	a	a	DET
ddj-47	378	13	quantum	quantum	ADJ
ddj-47	378	14	superposition	superposition	NOUN
ddj-47	378	15	of	of	ADP
ddj-47	378	16	the	the	DET
ddj-47	378	17	nucleotides	nucleotide	NOUN
ddj-47	378	18	coding	code	VERB
ddj-47	378	19	for	for	ADP
ddj-47	378	20	the	the	DET
ddj-47	378	21	amino	amino	NOUN
ddj-47	378	22	-	-	PUNCT
ddj-47	378	23	acid	acid	NOUN
ddj-47	378	24	in	in	ADP
ddj-47	378	25	question	question	NOUN
ddj-47	378	26	so	so	SCONJ
ddj-47	378	27	that	that	SCONJ
ddj-47	378	28	one	one	PRON
ddj-47	378	29	has	have	VERB
ddj-47	378	30	quantum	quantum	ADJ
ddj-47	378	31	superposition	superposition	NOUN
ddj-47	378	32	over	over	ADP
ddj-47	378	33	quark	quark	ADJ
ddj-47	378	34	pairs	pair	NOUN
ddj-47	378	35	associated	associate	VERB
ddj-47	378	36	with	with	ADP
ddj-47	378	37	the	the	DET
ddj-47	378	38	third	third	ADJ
ddj-47	378	39	nucleotide	nucleotide	NOUN
ddj-47	378	40	.	.	PUNCT
ddj-47	379	1	the	the	DET
ddj-47	379	2	two	two	NUM
ddj-47	379	3	-	-	PUNCT
ddj-47	379	4	point	point	NOUN
ddj-47	379	5	mutations	mutation	NOUN
ddj-47	379	6	possibly	possibly	ADV
ddj-47	379	7	carried	carry	VERB
ddj-47	379	8	out	out	ADP
ddj-47	379	9	intentionally	intentionally	ADV
ddj-47	379	10	by	by	ADP
ddj-47	379	11	the	the	DET
ddj-47	379	12	magnetic	magnetic	ADJ
ddj-47	379	13	body	body	NOUN
ddj-47	379	14	controlling	control	VERB
ddj-47	379	15	the	the	DET
ddj-47	379	16	genome	genome	NOUN
ddj-47	379	17	conserving	conserve	VERB
ddj-47	379	18	amino	amino	NOUN
ddj-47	379	19	-	-	PUNCT
ddj-47	379	20	acid	acid	NOUN
ddj-47	379	21	pairings	pairing	NOUN
ddj-47	379	22	by	by	ADP
ddj-47	379	23	hydrogen	hydrogen	NOUN
ddj-47	379	24	bonds	bond	NOUN
ddj-47	379	25	and	and	CCONJ
ddj-47	379	26	thus	thus	ADV
ddj-47	379	27	perhaps	perhaps	ADV
ddj-47	379	28	also	also	ADV
ddj-47	379	29	folding	fold	VERB
ddj-47	379	30	and	and	CCONJ
ddj-47	379	31	the	the	DET
ddj-47	379	32	catalytic	catalytic	ADJ
ddj-47	379	33	properties	property	NOUN
ddj-47	379	34	should	should	AUX
ddj-47	379	35	transform	transform	VERB
ddj-47	379	36	y	y	NOUN
ddj-47	379	37	=	=	SYM
ddj-47	379	38	zc	zc	PROPN
ddj-47	379	39	(	(	PUNCT
ddj-47	379	40	y	y	NOUN
ddj-47	379	41	=	=	SYM
ddj-47	379	42	z	z	X
ddj-47	379	43	)	)	PUNCT
ddj-47	379	44	pair	pair	NOUN
ddj-47	379	45	to	to	ADP
ddj-47	379	46	an	an	DET
ddj-47	379	47	allowed	allow	VERB
ddj-47	379	48	pair	pair	NOUN
ddj-47	379	49	of	of	ADP
ddj-47	379	50	this	this	DET
ddj-47	379	51	kind	kind	NOUN
ddj-47	379	52	so	so	SCONJ
ddj-47	379	53	that	that	SCONJ
ddj-47	379	54	quite	quite	ADV
ddj-47	379	55	wide	wide	ADJ
ddj-47	379	56	repertoire	repertoire	NOUN
ddj-47	379	57	of	of	ADP
ddj-47	379	58	allowed	allow	VERB
ddj-47	379	59	2	2	NUM
ddj-47	379	60	-	-	PUNCT
ddj-47	379	61	point	point	NOUN
ddj-47	379	62	mutations	mutation	NOUN
ddj-47	379	63	is	be	AUX
ddj-47	379	64	available	available	ADJ
ddj-47	379	65	for	for	ADP
ddj-47	379	66	this	this	DET
ddj-47	379	67	option	option	NOUN
ddj-47	379	68	.	.	PUNCT
ddj-47	380	1	3.3.2	3.3.2	NUM
ddj-47	380	2	y	y	X
ddj-47	380	3	=	=	SYM
ddj-47	380	4	zc	zc	PROPN
ddj-47	380	5	or	or	CCONJ
ddj-47	380	6	y	y	PROPN
ddj-47	380	7	=	=	SYM
ddj-47	380	8	z	z	NOUN
ddj-47	380	9	pairing	pairing	NOUN
ddj-47	380	10	might	might	AUX
ddj-47	380	11	work	work	VERB
ddj-47	380	12	the	the	DET
ddj-47	380	13	isospin	isospin	ADJ
ddj-47	380	14	symmetry	symmetry	NOUN
ddj-47	380	15	of	of	ADP
ddj-47	380	16	the	the	DET
ddj-47	380	17	third	third	ADJ
ddj-47	380	18	nucleotide	nucleotide	NOUN
ddj-47	380	19	implies	imply	VERB
ddj-47	380	20	that	that	SCONJ
ddj-47	380	21	y	y	PROPN
ddj-47	380	22	=	=	SYM
ddj-47	380	23	zc	zc	NOUN
ddj-47	380	24	pairing	pairing	NOUN
ddj-47	380	25	is	be	AUX
ddj-47	380	26	quite	quite	ADV
ddj-47	380	27	flexible	flexible	ADJ
ddj-47	380	28	.	.	PUNCT
ddj-47	381	1	roughly	roughly	ADV
ddj-47	381	2	,	,	PUNCT
ddj-47	381	3	the	the	DET
ddj-47	381	4	rule	rule	NOUN
ddj-47	381	5	would	would	AUX
ddj-47	381	6	allow	allow	VERB
ddj-47	381	7	flux	flux	NOUN
ddj-47	381	8	tube	tube	NOUN
ddj-47	381	9	connections	connection	NOUN
ddj-47	381	10	only	only	ADV
ddj-47	381	11	between	between	ADP
ddj-47	381	12	amino	amino	NOUN
ddj-47	381	13	-	-	PUNCT
ddj-47	381	14	acids	acid	NOUN
ddj-47	381	15	for	for	ADP
ddj-47	381	16	which	which	PRON
ddj-47	381	17	y	y	PROPN
ddj-47	381	18	and	and	CCONJ
ddj-47	381	19	z	z	PROPN
ddj-47	381	20	correspond	correspond	VERB
ddj-47	381	21	to	to	PART
ddj-47	381	22	quark	quark	VERB
ddj-47	381	23	and	and	CCONJ
ddj-47	381	24	antiquark	antiquark	PROPN
ddj-47	381	25	.	.	PUNCT
ddj-47	382	1	the	the	DET
ddj-47	382	2	amino	amino	NOUN
ddj-47	382	3	-	-	PUNCT
ddj-47	382	4	acid	acid	NOUN
ddj-47	382	5	pairs	pair	NOUN
ddj-47	382	6	can	can	AUX
ddj-47	382	7	be	be	AUX
ddj-47	382	8	classified	classify	VERB
ddj-47	382	9	to	to	ADP
ddj-47	382	10	three	three	NUM
ddj-47	382	11	types	type	NOUN
ddj-47	382	12	.	.	PUNCT
ddj-47	383	1	the	the	DET
ddj-47	383	2	amino	amino	NOUN
ddj-47	383	3	-	-	PUNCT
ddj-47	383	4	acid	acid	NOUN
ddj-47	383	5	pairs	pair	NOUN
ddj-47	383	6	for	for	ADP
ddj-47	383	7	which	which	PRON
ddj-47	383	8	issn	issn	VERB
ddj-47	383	9	:	:	PUNCT
ddj-47	383	10	2159	2159	NUM
ddj-47	383	11	-	-	SYM
ddj-47	383	12	0465	0465	NUM
ddj-47	383	13	dna	dna	PROPN
ddj-47	383	14	decipher	decipher	PROPN
ddj-47	383	15	journal	journal	PROPN
ddj-47	383	16	june	june	PROPN
ddj-47	383	17	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	383	18	published	publish	VERB
ddj-47	383	19	by	by	ADP
ddj-47	383	20	quantumdream	quantumdream	PROPN
ddj-47	383	21	,	,	PUNCT
ddj-47	383	22	inc	inc	PROPN
ddj-47	383	23	.	.	PROPN
ddj-47	383	24	dna	dna	PROPN
ddj-47	383	25	decipher	decipher	PROPN
ddj-47	383	26	journal	journal	NOUN
ddj-47	384	1	|	|	ADV
ddj-47	384	2	may	may	AUX
ddj-47	384	3	2013	2013	NUM
ddj-47	384	4	|	|	ADV
ddj-47	384	5	volume	volume	NOUN
ddj-47	384	6	3	3	NUM
ddj-47	384	7	|	|	NOUN
ddj-47	384	8	issue	issue	VERB
ddj-47	384	9	1	1	NUM
ddj-47	384	10	|	|	ADV
ddj-47	384	11	pp	pp	ADJ
ddj-47	384	12	.	.	PUNCT
ddj-47	385	1	58	58	NUM
ddj-47	385	2	-	-	SYM
ddj-47	385	3	88	88	NUM
ddj-47	385	4	70	70	NUM
ddj-47	385	5	pitkänen	pitkänen	NOUN
ddj-47	385	6	,	,	PUNCT
ddj-47	385	7	m.	m.	NOUN
ddj-47	385	8	,	,	PUNCT
ddj-47	385	9	a	a	DET
ddj-47	385	10	model	model	NOUN
ddj-47	385	11	for	for	ADP
ddj-47	385	12	protein	protein	NOUN
ddj-47	385	13	folding	folding	NOUN
ddj-47	385	14	and	and	CCONJ
ddj-47	385	15	biocatalysis	biocatalysis	NOUN
ddj-47	385	16	both	both	CCONJ
ddj-47	385	17	amino	amino	NOUN
ddj-47	385	18	-	-	PUNCT
ddj-47	385	19	acids	acid	NOUN
ddj-47	385	20	can	can	AUX
ddj-47	385	21	act	act	VERB
ddj-47	385	22	as	as	ADP
ddj-47	385	23	acceptors	acceptor	NOUN
ddj-47	385	24	and	and	CCONJ
ddj-47	385	25	donors	donor	NOUN
ddj-47	385	26	,	,	PUNCT
ddj-47	385	27	the	the	DET
ddj-47	385	28	pairs	pair	NOUN
ddj-47	385	29	for	for	ADP
ddj-47	385	30	which	which	PRON
ddj-47	385	31	amino	amino	NOUN
ddj-47	385	32	-	-	PUNCT
ddj-47	385	33	acids	acid	NOUN
ddj-47	385	34	can	can	AUX
ddj-47	385	35	act	act	VERB
ddj-47	385	36	only	only	ADV
ddj-47	385	37	as	as	ADP
ddj-47	385	38	an	an	DET
ddj-47	385	39	acceptor	acceptor	NOUN
ddj-47	385	40	or	or	CCONJ
ddj-47	385	41	donor	donor	NOUN
ddj-47	385	42	,	,	PUNCT
ddj-47	385	43	and	and	CCONJ
ddj-47	385	44	the	the	DET
ddj-47	385	45	pairs	pair	NOUN
ddj-47	385	46	for	for	ADP
ddj-47	385	47	which	which	PRON
ddj-47	385	48	no	no	DET
ddj-47	385	49	flux	flux	NOUN
ddj-47	385	50	tubes	tube	NOUN
ddj-47	385	51	are	be	AUX
ddj-47	385	52	possible	possible	ADJ
ddj-47	385	53	.	.	PUNCT
ddj-47	386	1	there	there	PRON
ddj-47	386	2	are	be	VERB
ddj-47	386	3	two	two	NUM
ddj-47	386	4	options	option	NOUN
ddj-47	386	5	to	to	PART
ddj-47	386	6	be	be	AUX
ddj-47	386	7	considered	consider	VERB
ddj-47	386	8	.	.	PUNCT
ddj-47	387	1	option	option	NOUN
ddj-47	387	2	1	1	NUM
ddj-47	387	3	:	:	PUNCT
ddj-47	387	4	flux	flux	NOUN
ddj-47	387	5	tube	tube	NOUN
ddj-47	387	6	in	in	ADP
ddj-47	387	7	either	either	DET
ddj-47	387	8	direction	direction	NOUN
ddj-47	387	9	between	between	ADP
ddj-47	387	10	amino	amino	NOUN
ddj-47	387	11	-	-	PUNCT
ddj-47	387	12	acids	acid	NOUN
ddj-47	387	13	is	be	AUX
ddj-47	387	14	prerequisite	prerequisite	NOUN
ddj-47	387	15	for	for	ADP
ddj-47	387	16	the	the	DET
ddj-47	387	17	existence	existence	NOUN
ddj-47	387	18	of	of	ADP
ddj-47	387	19	the	the	DET
ddj-47	387	20	hydrogen	hydrogen	NOUN
ddj-47	387	21	bond	bond	NOUN
ddj-47	387	22	.	.	PUNCT
ddj-47	388	1	in	in	ADP
ddj-47	388	2	this	this	DET
ddj-47	388	3	case	case	NOUN
ddj-47	388	4	the	the	DET
ddj-47	388	5	condition	condition	NOUN
ddj-47	388	6	is	be	AUX
ddj-47	388	7	y	y	PROPN
ddj-47	388	8	(	(	PUNCT
ddj-47	388	9	n	n	CCONJ
ddj-47	388	10	)	)	PUNCT
ddj-47	388	11	=	=	NOUN
ddj-47	388	12	z(n	z(n	PROPN
ddj-47	388	13	+	+	CCONJ
ddj-47	388	14	k	k	NOUN
ddj-47	388	15	)	)	PUNCT
ddj-47	388	16	or	or	CCONJ
ddj-47	388	17	z(n	z(n	NOUN
ddj-47	388	18	)	)	PUNCT
ddj-47	389	1	=	=	SYM
ddj-47	389	2	y	y	PROPN
ddj-47	389	3	(	(	PUNCT
ddj-47	389	4	n	n	PROPN
ddj-47	389	5	+	+	CCONJ
ddj-47	389	6	k	k	NOUN
ddj-47	389	7	)	)	PUNCT
ddj-47	389	8	.	.	PUNCT
ddj-47	390	1	option	option	NOUN
ddj-47	390	2	2	2	NUM
ddj-47	390	3	:	:	PUNCT
ddj-47	390	4	hydrogen	hydrogen	NOUN
ddj-47	390	5	bond	bond	NOUN
ddj-47	390	6	is	be	AUX
ddj-47	390	7	identified	identify	VERB
ddj-47	390	8	as	as	ADP
ddj-47	390	9	a	a	DET
ddj-47	390	10	flux	flux	NOUN
ddj-47	390	11	tube	tube	NOUN
ddj-47	390	12	.	.	PUNCT
ddj-47	391	1	the	the	DET
ddj-47	391	2	condition	condition	NOUN
ddj-47	391	3	is	be	AUX
ddj-47	391	4	y	y	PROPN
ddj-47	391	5	(	(	PUNCT
ddj-47	391	6	n	n	CCONJ
ddj-47	391	7	)	)	PUNCT
ddj-47	391	8	=	=	NOUN
ddj-47	391	9	z(n	z(n	PROPN
ddj-47	391	10	+	+	CCONJ
ddj-47	391	11	k	k	NOUN
ddj-47	391	12	)	)	PUNCT
ddj-47	391	13	and	and	CCONJ
ddj-47	391	14	thus	thus	ADV
ddj-47	391	15	stronger	strong	ADJ
ddj-47	391	16	than	than	ADP
ddj-47	391	17	for	for	ADP
ddj-47	391	18	the	the	DET
ddj-47	391	19	first	first	ADJ
ddj-47	391	20	option	option	NOUN
ddj-47	391	21	.	.	PUNCT
ddj-47	392	1	the	the	DET
ddj-47	392	2	following	follow	VERB
ddj-47	392	3	table	table	NOUN
ddj-47	392	4	summarizes	summarize	NOUN
ddj-47	392	5	the	the	DET
ddj-47	392	6	allowed	allow	VERB
ddj-47	392	7	and	and	CCONJ
ddj-47	392	8	non	non	ADJ
ddj-47	392	9	-	-	ADJ
ddj-47	392	10	allowed	allow	VERB
ddj-47	392	11	pairings	pairing	NOUN
ddj-47	392	12	for	for	ADP
ddj-47	392	13	y	y	PROPN
ddj-47	392	14	=	=	SYM
ddj-47	392	15	zc	zc	PROPN
ddj-47	392	16	and	and	CCONJ
ddj-47	392	17	y	y	NOUN
ddj-47	392	18	=	=	NOUN
ddj-47	392	19	z	z	NOUN
ddj-47	392	20	pairings	pairing	NOUN
ddj-47	392	21	.	.	PUNCT
ddj-47	393	1	to	to	PART
ddj-47	393	2	understand	understand	VERB
ddj-47	393	3	the	the	DET
ddj-47	393	4	tables	table	NOUN
ddj-47	393	5	some	some	DET
ddj-47	393	6	notation	notation	NOUN
ddj-47	393	7	conventions	convention	NOUN
ddj-47	393	8	must	must	AUX
ddj-47	393	9	be	be	AUX
ddj-47	393	10	introduced	introduce	VERB
ddj-47	393	11	.	.	PUNCT
ddj-47	394	1	1	1	X
ddj-47	394	2	.	.	X
ddj-47	394	3	let	let	VERB
ddj-47	394	4	xij	xij	PRON
ddj-47	394	5	denote	denote	VERB
ddj-47	394	6	the	the	DET
ddj-47	394	7	amino	amino	NOUN
ddj-47	394	8	-	-	PUNCT
ddj-47	394	9	acids	acid	NOUN
ddj-47	394	10	in	in	ADP
ddj-47	394	11	i	i	PRON
ddj-47	394	12	:	:	PUNCT
ddj-47	394	13	th	th	X
ddj-47	394	14	and	and	CCONJ
ddj-47	394	15	j	j	NOUN
ddj-47	394	16	:	:	PUNCT
ddj-47	394	17	th	th	X
ddj-47	394	18	column	column	NOUN
ddj-47	394	19	of	of	ADP
ddj-47	394	20	the	the	DET
ddj-47	394	21	code	code	NOUN
ddj-47	394	22	table	table	NOUN
ddj-47	394	23	.	.	PUNCT
ddj-47	395	1	i	i	PRON
ddj-47	395	2	,	,	PUNCT
ddj-47	395	3	j	j	PROPN
ddj-47	395	4	=	=	SYM
ddj-47	395	5	1	1	NUM
ddj-47	395	6	,	,	PUNCT
ddj-47	395	7	2	2	NUM
ddj-47	395	8	corresponds	correspond	NOUN
ddj-47	395	9	to	to	ADP
ddj-47	395	10	hydrophobic	hydrophobic	VERB
ddj-47	395	11	amino	amino	NOUN
ddj-47	395	12	-	-	PUNCT
ddj-47	395	13	acid	acid	NOUN
ddj-47	395	14	residues	residue	NOUN
ddj-47	395	15	and	and	CCONJ
ddj-47	395	16	i	i	PRON
ddj-47	395	17	,	,	PUNCT
ddj-47	395	18	j=3,4	j=3,4	ADJ
ddj-47	395	19	to	to	PART
ddj-47	395	20	hydrophilic	hydrophilic	VERB
ddj-47	395	21	amino	amino	NOUN
ddj-47	395	22	-	-	PUNCT
ddj-47	395	23	acid	acid	NOUN
ddj-47	395	24	residues	residue	NOUN
ddj-47	395	25	.	.	PUNCT
ddj-47	396	1	2	2	X
ddj-47	396	2	.	.	X
ddj-47	396	3	for	for	ADP
ddj-47	396	4	y	y	PROPN
ddj-47	396	5	=	=	SYM
ddj-47	396	6	zc	zc	NOUN
ddj-47	396	7	option	option	NOUN
ddj-47	396	8	the	the	DET
ddj-47	396	9	sets	set	NOUN
ddj-47	396	10	t	t	PROPN
ddj-47	396	11	,	,	PUNCT
ddj-47	396	12	t	t	PROPN
ddj-47	396	13	,	,	PUNCT
ddj-47	396	14	u	u	NOUN
ddj-47	396	15	,	,	PUNCT
ddj-47	396	16	v	v	NOUN
ddj-47	396	17	,	,	PUNCT
ddj-47	396	18	w	w	PROPN
ddj-47	396	19	,	,	PUNCT
ddj-47	396	20	x	x	PRON
ddj-47	396	21	are	be	AUX
ddj-47	396	22	defined	define	VERB
ddj-47	396	23	as	as	ADP
ddj-47	396	24	t	t	NOUN
ddj-47	396	25	=	=	SYM
ddj-47	396	26	{	{	PUNCT
ddj-47	396	27	phe	phe	PROPN
ddj-47	396	28	}	}	PUNCT
ddj-47	396	29	,	,	PUNCT
ddj-47	396	30	t	t	PROPN
ddj-47	396	31	=	=	SYM
ddj-47	396	32	x12−t	x12−t	PROPN
ddj-47	396	33	,	,	PUNCT
ddj-47	396	34	u	u	NOUN
ddj-47	396	35	=	=	X
ddj-47	396	36	{	{	PUNCT
ddj-47	396	37	tyr	tyr	PROPN
ddj-47	396	38	,	,	PUNCT
ddj-47	396	39	his	his	PRON
ddj-47	396	40	,	,	PUNCT
ddj-47	396	41	asn	asn	PROPN
ddj-47	396	42	,	,	PUNCT
ddj-47	396	43	asp	asp	PROPN
ddj-47	396	44	,	,	PUNCT
ddj-47	396	45	cys	cys	PROPN
ddj-47	396	46	,	,	PUNCT
ddj-47	396	47	arg	arg	PROPN
ddj-47	396	48	,	,	PUNCT
ddj-47	396	49	ser	ser	NOUN
ddj-47	396	50	,	,	PUNCT
ddj-47	396	51	gly	gly	ADV
ddj-47	396	52	}	}	PUNCT
ddj-47	396	53	,	,	PUNCT
ddj-47	396	54	v	v	X
ddj-47	396	55	=	=	SYM
ddj-47	396	56	{	{	PUNCT
ddj-47	396	57	trp	trp	PROPN
ddj-47	396	58	,	,	PUNCT
ddj-47	396	59	gln	gln	PROPN
ddj-47	396	60	,	,	PUNCT
ddj-47	396	61	lys	lys	PROPN
ddj-47	396	62	,	,	PUNCT
ddj-47	396	63	glu	glu	NOUN
ddj-47	396	64	,	,	PUNCT
ddj-47	396	65	gly	gly	NOUN
ddj-47	396	66	}	}	PUNCT
ddj-47	396	67	,	,	PUNCT
ddj-47	396	68	w	w	NOUN
ddj-47	396	69	=	=	SYM
ddj-47	396	70	{	{	PUNCT
ddj-47	396	71	gln	gln	PROPN
ddj-47	396	72	,	,	PUNCT
ddj-47	396	73	lys	lys	PROPN
ddj-47	396	74	,	,	PUNCT
ddj-47	396	75	glu	glu	PROPN
ddj-47	396	76	,	,	PUNCT
ddj-47	396	77	trp	trp	PROPN
ddj-47	396	78	,	,	PUNCT
ddj-47	396	79	arg	arg	PROPN
ddj-47	396	80	,	,	PUNCT
ddj-47	396	81	gly	gly	ADV
ddj-47	396	82	}	}	PUNCT
ddj-47	396	83	,	,	PUNCT
ddj-47	396	84	and	and	CCONJ
ddj-47	396	85	x	x	X
ddj-47	396	86	=	=	SYM
ddj-47	396	87	{	{	PUNCT
ddj-47	396	88	tyr	tyr	PROPN
ddj-47	396	89	,	,	PUNCT
ddj-47	396	90	his	his	PRON
ddj-47	396	91	,	,	PUNCT
ddj-47	396	92	asn	asn	PROPN
ddj-47	396	93	,	,	PUNCT
ddj-47	396	94	asp	asp	PROPN
ddj-47	396	95	,	,	PUNCT
ddj-47	396	96	cys	cys	PROPN
ddj-47	396	97	}	}	PUNCT
ddj-47	396	98	.	.	PUNCT
ddj-47	397	1	3	3	X
ddj-47	397	2	.	.	X
ddj-47	397	3	for	for	ADP
ddj-47	397	4	y	y	PROPN
ddj-47	397	5	=	=	SYM
ddj-47	397	6	z	z	NOUN
ddj-47	397	7	option	option	NOUN
ddj-47	397	8	the	the	DET
ddj-47	397	9	sets	set	NOUN
ddj-47	397	10	t	t	PROPN
ddj-47	397	11	,	,	PUNCT
ddj-47	397	12	t	t	PROPN
ddj-47	397	13	,	,	PUNCT
ddj-47	397	14	u	u	NOUN
ddj-47	397	15	,	,	PUNCT
ddj-47	397	16	v	v	NOUN
ddj-47	397	17	,	,	PUNCT
ddj-47	397	18	w	w	PROPN
ddj-47	397	19	,	,	PUNCT
ddj-47	397	20	x	x	PRON
ddj-47	397	21	are	be	AUX
ddj-47	397	22	defined	define	VERB
ddj-47	397	23	as	as	ADP
ddj-47	397	24	t={met	t={met	PROPN
ddj-47	397	25	}	}	PUNCT
ddj-47	397	26	,	,	PUNCT
ddj-47	397	27	t	t	PROPN
ddj-47	397	28	=	=	SYM
ddj-47	397	29	x12−t	x12−t	PROPN
ddj-47	397	30	,	,	PUNCT
ddj-47	397	31	u	u	NOUN
ddj-47	397	32	=	=	SYM
ddj-47	397	33	{	{	PUNCT
ddj-47	397	34	trp	trp	PROPN
ddj-47	397	35	,	,	PUNCT
ddj-47	397	36	gln	gln	PROPN
ddj-47	397	37	,	,	PUNCT
ddj-47	397	38	lys	lys	PROPN
ddj-47	397	39	,	,	PUNCT
ddj-47	397	40	glu	glu	PROPN
ddj-47	397	41	,	,	PUNCT
ddj-47	397	42	arg	arg	NOUN
ddj-47	397	43	,	,	PUNCT
ddj-47	397	44	gly	gly	ADV
ddj-47	397	45	}	}	PUNCT
ddj-47	397	46	,	,	PUNCT
ddj-47	397	47	v	v	X
ddj-47	397	48	=	=	SYM
ddj-47	397	49	{	{	PUNCT
ddj-47	397	50	tyr	tyr	PROPN
ddj-47	397	51	,	,	PUNCT
ddj-47	397	52	his	his	PRON
ddj-47	397	53	,	,	PUNCT
ddj-47	397	54	asn	asn	PROPN
ddj-47	397	55	,	,	PUNCT
ddj-47	397	56	asp	asp	PROPN
ddj-47	397	57	,	,	PUNCT
ddj-47	397	58	cys	cys	PROPN
ddj-47	397	59	}	}	PUNCT
ddj-47	397	60	,	,	PUNCT
ddj-47	397	61	w	w	X
ddj-47	397	62	=	=	SYM
ddj-47	397	63	{	{	PUNCT
ddj-47	397	64	tyr	tyr	PROPN
ddj-47	397	65	,	,	PUNCT
ddj-47	397	66	his	his	PRON
ddj-47	397	67	,	,	PUNCT
ddj-47	397	68	asn	asn	PROPN
ddj-47	397	69	,	,	PUNCT
ddj-47	397	70	asp	asp	PROPN
ddj-47	397	71	,	,	PUNCT
ddj-47	397	72	cys	cys	PROPN
ddj-47	397	73	,	,	PUNCT
ddj-47	397	74	arg	arg	PROPN
ddj-47	397	75	,	,	PUNCT
ddj-47	397	76	ser	ser	NOUN
ddj-47	397	77	,	,	PUNCT
ddj-47	397	78	gly	gly	ADV
ddj-47	397	79	}	}	PUNCT
ddj-47	397	80	,	,	PUNCT
ddj-47	397	81	and	and	CCONJ
ddj-47	397	82	x	x	X
ddj-47	397	83	=	=	SYM
ddj-47	397	84	{	{	PUNCT
ddj-47	397	85	gln	gln	PROPN
ddj-47	397	86	,	,	PUNCT
ddj-47	397	87	lys	lys	PROPN
ddj-47	397	88	,	,	PUNCT
ddj-47	397	89	glu	glu	PROPN
ddj-47	397	90	,	,	PUNCT
ddj-47	397	91	trp	trp	PROPN
ddj-47	397	92	}	}	PUNCT
ddj-47	397	93	.	.	PUNCT
ddj-47	398	1	ser	ser	NOUN
ddj-47	398	2	has	have	AUX
ddj-47	398	3	been	be	AUX
ddj-47	398	4	excluded	exclude	VERB
ddj-47	398	5	from	from	ADP
ddj-47	398	6	v	v	ADP
ddj-47	398	7	since	since	SCONJ
ddj-47	398	8	it	it	PRON
ddj-47	398	9	appears	appear	VERB
ddj-47	398	10	also	also	ADV
ddj-47	398	11	in	in	ADP
ddj-47	398	12	the	the	DET
ddj-47	398	13	second	second	ADJ
ddj-47	398	14	column	column	NOUN
ddj-47	398	15	of	of	ADP
ddj-47	398	16	the	the	DET
ddj-47	398	17	code	code	NOUN
ddj-47	398	18	table	table	NOUN
ddj-47	398	19	.	.	PUNCT
ddj-47	399	1	a	a	PRON
ddj-47	399	2	and	and	CCONJ
ddj-47	399	3	d	d	ADP
ddj-47	399	4	a	a	PRON
ddj-47	399	5	or	or	CCONJ
ddj-47	399	6	d	d	NOUN
ddj-47	399	7	no	no	DET
ddj-47	399	8	flux	flux	NOUN
ddj-47	399	9	tubes	tube	NOUN
ddj-47	399	10	x12	x12	NUM
ddj-47	400	1	×x12	×x12	PROPN
ddj-47	401	1	t	t	PROPN
ddj-47	401	2	×	×	NOUN
ddj-47	401	3	t	t	PROPN
ddj-47	401	4	t	t	X
ddj-47	401	5	×	×	PROPN
ddj-47	401	6	t	t	PROPN
ddj-47	401	7	t×	t×	PROPN
ddj-47	401	8	t	t	NOUN
ddj-47	401	9	x34	x34	NOUN
ddj-47	402	1	×x34	×x34	NOUN
ddj-47	402	2	u	u	NOUN
ddj-47	402	3	×	×	VERB
ddj-47	402	4	u	u	NOUN
ddj-47	402	5	u	u	NOUN
ddj-47	402	6	×	×	NOUN
ddj-47	402	7	v	v	INTJ
ddj-47	402	8	v	v	NUM
ddj-47	402	9	×	×	NOUN
ddj-47	402	10	v	v	NUM
ddj-47	402	11	x12	x12	NUM
ddj-47	403	1	×x34	×x34	NOUN
ddj-47	403	2	x12	x12	NUM
ddj-47	403	3	×w	×w	NOUN
ddj-47	403	4	t	t	PROPN
ddj-47	403	5	×x	×x	NOUN
ddj-47	403	6	t×x	t×x	NOUN
ddj-47	403	7	table	table	NOUN
ddj-47	403	8	1	1	NUM
ddj-47	403	9	.	.	PUNCT
ddj-47	403	10	general	general	ADJ
ddj-47	403	11	structure	structure	NOUN
ddj-47	403	12	of	of	ADP
ddj-47	403	13	pairings	pairing	NOUN
ddj-47	403	14	for	for	ADP
ddj-47	403	15	y	y	PROPN
ddj-47	403	16	=	=	SYM
ddj-47	403	17	zc	zc	PROPN
ddj-47	403	18	and	and	CCONJ
ddj-47	403	19	y	y	NOUN
ddj-47	403	20	=	=	SYM
ddj-47	403	21	z	z	NOUN
ddj-47	403	22	options	option	NOUN
ddj-47	403	23	.	.	PUNCT
ddj-47	404	1	a	a	PRON
ddj-47	404	2	and	and	CCONJ
ddj-47	404	3	d	d	NOUN
ddj-47	404	4	means	mean	VERB
ddj-47	404	5	that	that	SCONJ
ddj-47	404	6	both	both	DET
ddj-47	404	7	amino	amino	NOUN
ddj-47	404	8	-	-	PUNCT
ddj-47	404	9	acids	acid	NOUN
ddj-47	404	10	can	can	AUX
ddj-47	404	11	act	act	VERB
ddj-47	404	12	as	as	ADP
ddj-47	404	13	acceptors	acceptor	NOUN
ddj-47	404	14	and	and	CCONJ
ddj-47	404	15	donors	donor	NOUN
ddj-47	404	16	.	.	PUNCT
ddj-47	405	1	a	a	DET
ddj-47	405	2	or	or	CCONJ
ddj-47	405	3	d	d	NOUN
ddj-47	405	4	that	that	PRON
ddj-47	405	5	only	only	ADV
ddj-47	405	6	acceptor	acceptor	NOUN
ddj-47	405	7	or	or	CCONJ
ddj-47	405	8	donor	donor	NOUN
ddj-47	405	9	property	property	NOUN
ddj-47	405	10	is	be	AUX
ddj-47	405	11	possible	possible	ADJ
ddj-47	405	12	.	.	PUNCT
ddj-47	406	1	some	some	DET
ddj-47	406	2	clarifying	clarify	VERB
ddj-47	406	3	comments	comment	NOUN
ddj-47	406	4	about	about	ADP
ddj-47	406	5	the	the	DET
ddj-47	406	6	table	table	NOUN
ddj-47	406	7	are	be	AUX
ddj-47	406	8	in	in	ADP
ddj-47	406	9	order	order	NOUN
ddj-47	406	10	.	.	PUNCT
ddj-47	407	1	1	1	X
ddj-47	407	2	.	.	X
ddj-47	407	3	pro	pro	X
ddj-47	407	4	is	be	AUX
ddj-47	407	5	an	an	DET
ddj-47	407	6	exception	exception	NOUN
ddj-47	407	7	since	since	SCONJ
ddj-47	407	8	z	z	NOUN
ddj-47	407	9	nucleotide	nucleotide	NOUN
ddj-47	407	10	can	can	AUX
ddj-47	407	11	not	not	PART
ddj-47	407	12	be	be	AUX
ddj-47	407	13	represented	represent	VERB
ddj-47	407	14	in	in	ADP
ddj-47	407	15	this	this	DET
ddj-47	407	16	case	case	NOUN
ddj-47	407	17	and	and	CCONJ
ddj-47	407	18	pro	pro	X
ddj-47	407	19	can	can	AUX
ddj-47	407	20	act	act	VERB
ddj-47	407	21	as	as	ADP
ddj-47	407	22	donor	donor	NOUN
ddj-47	407	23	.	.	PUNCT
ddj-47	408	1	this	this	PRON
ddj-47	408	2	has	have	AUX
ddj-47	408	3	not	not	PART
ddj-47	408	4	been	be	AUX
ddj-47	408	5	taken	take	VERB
ddj-47	408	6	into	into	ADP
ddj-47	408	7	account	account	NOUN
ddj-47	408	8	in	in	ADP
ddj-47	408	9	the	the	DET
ddj-47	408	10	tables	table	NOUN
ddj-47	408	11	.	.	PUNCT
ddj-47	409	1	2	2	X
ddj-47	409	2	.	.	X
ddj-47	409	3	the	the	DET
ddj-47	409	4	codons	codon	NOUN
ddj-47	409	5	coding	code	VERB
ddj-47	409	6	for	for	ADP
ddj-47	409	7	the	the	DET
ddj-47	409	8	paired	pair	VERB
ddj-47	409	9	amino	amino	NOUN
ddj-47	409	10	-	-	PUNCT
ddj-47	409	11	acid	acid	NOUN
ddj-47	409	12	give	give	VERB
ddj-47	409	13	additional	additional	ADJ
ddj-47	409	14	strong	strong	ADJ
ddj-47	409	15	limitations	limitation	NOUN
ddj-47	409	16	on	on	ADP
ddj-47	409	17	the	the	DET
ddj-47	409	18	pairing	pairing	NOUN
ddj-47	409	19	unless	unless	SCONJ
ddj-47	409	20	z	z	NOUN
ddj-47	409	21	corresponds	correspond	VERB
ddj-47	409	22	to	to	ADP
ddj-47	409	23	quantum	quantum	ADJ
ddj-47	409	24	superposition	superposition	NOUN
ddj-47	409	25	of	of	ADP
ddj-47	409	26	quark	quark	ADJ
ddj-47	409	27	pairs	pair	NOUN
ddj-47	409	28	associated	associate	VERB
ddj-47	409	29	with	with	ADP
ddj-47	409	30	the	the	DET
ddj-47	409	31	third	third	ADJ
ddj-47	409	32	nucleotide	nucleotide	NOUN
ddj-47	409	33	for	for	ADP
ddj-47	409	34	the	the	DET
ddj-47	409	35	codons	codon	NOUN
ddj-47	409	36	coding	code	VERB
ddj-47	409	37	for	for	ADP
ddj-47	409	38	the	the	DET
ddj-47	409	39	amino	amino	NOUN
ddj-47	409	40	-	-	PUNCT
ddj-47	409	41	acid	acid	NOUN
ddj-47	409	42	.	.	PUNCT
ddj-47	410	1	3	3	X
ddj-47	410	2	.	.	X
ddj-47	410	3	depending	depend	VERB
ddj-47	410	4	on	on	ADP
ddj-47	410	5	option	option	NOUN
ddj-47	410	6	either	either	CCONJ
ddj-47	410	7	phe	phe	PROPN
ddj-47	410	8	-	-	PUNCT
ddj-47	410	9	phe	phe	PROPN
ddj-47	410	10	or	or	CCONJ
ddj-47	410	11	met	met	AUX
ddj-47	410	12	-	-	PUNCT
ddj-47	410	13	met	meet	VERB
ddj-47	410	14	hydrogen	hydrogen	NOUN
ddj-47	410	15	bonding	bonding	NOUN
ddj-47	410	16	is	be	AUX
ddj-47	410	17	forbidden	forbid	VERB
ddj-47	410	18	so	so	SCONJ
ddj-47	410	19	that	that	SCONJ
ddj-47	410	20	for	for	ADP
ddj-47	410	21	hydrophobic	hydrophobic	NOUN
ddj-47	410	22	amino	amino	NOUN
ddj-47	410	23	-	-	PUNCT
ddj-47	410	24	acids	acid	NOUN
ddj-47	410	25	almost	almost	ADV
ddj-47	410	26	all	all	PRON
ddj-47	410	27	pairings	pairing	NOUN
ddj-47	410	28	are	be	AUX
ddj-47	410	29	possible	possible	ADJ
ddj-47	410	30	.	.	PUNCT
ddj-47	411	1	this	this	PRON
ddj-47	411	2	might	might	AUX
ddj-47	411	3	allow	allow	VERB
ddj-47	411	4	to	to	PART
ddj-47	411	5	select	select	VERB
ddj-47	411	6	between	between	ADP
ddj-47	411	7	the	the	DET
ddj-47	411	8	two	two	NUM
ddj-47	411	9	options	option	NOUN
ddj-47	411	10	or	or	CCONJ
ddj-47	411	11	kill	kill	VERB
ddj-47	411	12	both	both	PRON
ddj-47	411	13	.	.	PUNCT
ddj-47	412	1	the	the	DET
ddj-47	412	2	special	special	ADJ
ddj-47	412	3	role	role	NOUN
ddj-47	412	4	of	of	ADP
ddj-47	412	5	met	meet	VERB
ddj-47	412	6	suggest	suggest	VERB
ddj-47	412	7	that	that	SCONJ
ddj-47	412	8	y	y	PROPN
ddj-47	412	9	=	=	SYM
ddj-47	412	10	z	z	NOUN
ddj-47	412	11	pairing	pairing	NOUN
ddj-47	412	12	might	might	AUX
ddj-47	412	13	be	be	AUX
ddj-47	412	14	the	the	DET
ddj-47	412	15	right	right	ADJ
ddj-47	412	16	option	option	NOUN
ddj-47	412	17	.	.	PUNCT
ddj-47	413	1	also	also	ADV
ddj-47	413	2	the	the	DET
ddj-47	413	3	model	model	NOUN
ddj-47	413	4	for	for	ADP
ddj-47	413	5	dna	dna	PROPN
ddj-47	413	6	as	as	ADP
ddj-47	413	7	tqc	tqc	PROPN
ddj-47	413	8	assumes	assume	VERB
ddj-47	413	9	that	that	SCONJ
ddj-47	413	10	o	o	PROPN
ddj-47	413	11	=	=	PUNCT
ddj-47	413	12	associated	associate	VERB
ddj-47	413	13	with	with	ADP
ddj-47	413	14	lipids	lipid	NOUN
ddj-47	413	15	can	can	AUX
ddj-47	413	16	act	act	VERB
ddj-47	413	17	as	as	ADP
ddj-47	413	18	a	a	DET
ddj-47	413	19	plug	plug	NOUN
ddj-47	413	20	to	to	PART
ddj-47	413	21	which	which	PRON
ddj-47	413	22	two	two	NUM
ddj-47	413	23	flux	flux	NOUN
ddj-47	413	24	tubes	tube	NOUN
ddj-47	413	25	terminate	terminate	NOUN
ddj-47	413	26	.	.	PUNCT
ddj-47	414	1	on	on	ADP
ddj-47	414	2	the	the	DET
ddj-47	414	3	other	other	ADJ
ddj-47	414	4	hand	hand	NOUN
ddj-47	414	5	,	,	PUNCT
ddj-47	414	6	phe	phe	PROPN
ddj-47	414	7	is	be	AUX
ddj-47	414	8	also	also	ADV
ddj-47	414	9	exceptional	exceptional	ADJ
ddj-47	414	10	in	in	ADP
ddj-47	414	11	the	the	DET
ddj-47	414	12	sense	sense	NOUN
ddj-47	414	13	that	that	SCONJ
ddj-47	414	14	it	it	PRON
ddj-47	414	15	is	be	AUX
ddj-47	414	16	the	the	DET
ddj-47	414	17	only	only	ADJ
ddj-47	414	18	amino	amino	NOUN
ddj-47	414	19	-	-	PUNCT
ddj-47	414	20	acid	acid	NOUN
ddj-47	414	21	in	in	ADP
ddj-47	414	22	x12	x12	NUM
ddj-47	414	23	which	which	PRON
ddj-47	414	24	has	have	VERB
ddj-47	414	25	aromatic	aromatic	ADJ
ddj-47	414	26	ring	ring	NOUN
ddj-47	414	27	and	and	CCONJ
ddj-47	414	28	can	can	AUX
ddj-47	414	29	act	act	VERB
ddj-47	414	30	as	as	ADP
ddj-47	414	31	an	an	DET
ddj-47	414	32	acceptor	acceptor	NOUN
ddj-47	414	33	.	.	PUNCT
ddj-47	415	1	4	4	X
ddj-47	415	2	.	.	X
ddj-47	415	3	the	the	DET
ddj-47	415	4	amino	amino	NOUN
ddj-47	415	5	-	-	PUNCT
ddj-47	415	6	acids	acid	NOUN
ddj-47	415	7	which	which	PRON
ddj-47	415	8	can	can	AUX
ddj-47	415	9	act	act	VERB
ddj-47	415	10	simultaneously	simultaneously	ADV
ddj-47	415	11	as	as	SCONJ
ddj-47	415	12	donors	donor	NOUN
ddj-47	415	13	and	and	CCONJ
ddj-47	415	14	acceptors	acceptor	NOUN
ddj-47	415	15	are	be	AUX
ddj-47	415	16	of	of	ADP
ddj-47	415	17	special	special	ADJ
ddj-47	415	18	interest	interest	NOUN
ddj-47	415	19	as	as	ADP
ddj-47	415	20	far	far	ADJ
ddj-47	415	21	interactions	interaction	NOUN
ddj-47	415	22	between	between	ADP
ddj-47	415	23	catalyst	catalyst	NOUN
ddj-47	415	24	sites	site	NOUN
ddj-47	415	25	of	of	ADP
ddj-47	415	26	protein	protein	NOUN
ddj-47	415	27	and	and	CCONJ
ddj-47	415	28	ligand	ligand	NOUN
ddj-47	415	29	are	be	AUX
ddj-47	415	30	considered	consider	VERB
ddj-47	415	31	.	.	PUNCT
ddj-47	416	1	second	second	ADJ
ddj-47	416	2	flux	flux	NOUN
ddj-47	416	3	tube	tube	NOUN
ddj-47	416	4	could	could	AUX
ddj-47	416	5	be	be	AUX
ddj-47	416	6	involved	involve	VERB
ddj-47	416	7	with	with	ADP
ddj-47	416	8	the	the	DET
ddj-47	416	9	structure	structure	NOUN
ddj-47	416	10	of	of	ADP
ddj-47	416	11	the	the	DET
ddj-47	416	12	catalyst	catalyst	NOUN
ddj-47	416	13	site	site	NOUN
ddj-47	416	14	and	and	CCONJ
ddj-47	416	15	second	second	ADJ
ddj-47	416	16	flux	flux	NOUN
ddj-47	416	17	tube	tube	NOUN
ddj-47	416	18	with	with	ADP
ddj-47	416	19	the	the	DET
ddj-47	416	20	bonding	bonding	NOUN
ddj-47	416	21	of	of	ADP
ddj-47	416	22	between	between	ADP
ddj-47	416	23	catalyst	catalyst	NOUN
ddj-47	416	24	sites	site	NOUN
ddj-47	416	25	.	.	PUNCT
ddj-47	417	1	this	this	DET
ddj-47	417	2	kind	kind	NOUN
ddj-47	417	3	of	of	ADP
ddj-47	417	4	amino	amino	NOUN
ddj-47	417	5	-	-	PUNCT
ddj-47	417	6	acids	acid	NOUN
ddj-47	417	7	correspond	correspond	NOUN
ddj-47	417	8	to	to	ADP
ddj-47	417	9	t	t	PROPN
ddj-47	417	10	×	×	PROPN
ddj-47	417	11	t	t	PROPN
ddj-47	417	12	,	,	PUNCT
ddj-47	417	13	u	u	PRON
ddj-47	417	14	×	×	PROPN
ddj-47	417	15	u	u	NOUN
ddj-47	417	16	,	,	PUNCT
ddj-47	417	17	x12	x12	NUM
ddj-47	417	18	×w	×w	NOUN
ddj-47	417	19	.	.	PUNCT
ddj-47	418	1	for	for	SCONJ
ddj-47	418	2	both	both	DET
ddj-47	418	3	options	option	NOUN
ddj-47	418	4	hydrophobic	hydrophobic	NOUN
ddj-47	418	5	amino	amino	NOUN
ddj-47	418	6	-	-	PUNCT
ddj-47	418	7	acid	acid	NOUN
ddj-47	418	8	can	can	AUX
ddj-47	418	9	be	be	AUX
ddj-47	418	10	connected	connect	VERB
ddj-47	418	11	with	with	ADP
ddj-47	418	12	any	any	DET
ddj-47	418	13	other	other	ADJ
ddj-47	418	14	hydrophobic	hydrophobic	NOUN
ddj-47	418	15	amino	amino	NOUN
ddj-47	418	16	-	-	PUNCT
ddj-47	418	17	acid	acid	NOUN
ddj-47	418	18	.	.	PUNCT
ddj-47	419	1	in	in	ADP
ddj-47	419	2	the	the	DET
ddj-47	419	3	case	case	NOUN
ddj-47	419	4	that	that	SCONJ
ddj-47	419	5	the	the	DET
ddj-47	419	6	two	two	NUM
ddj-47	419	7	amino	amino	NOUN
ddj-47	419	8	-	-	PUNCT
ddj-47	419	9	acids	acid	NOUN
ddj-47	419	10	are	be	AUX
ddj-47	419	11	connected	connect	VERB
ddj-47	419	12	by	by	ADP
ddj-47	419	13	two	two	NUM
ddj-47	419	14	flux	flux	NOUN
ddj-47	419	15	tubes	tube	NOUN
ddj-47	419	16	one	one	NOUN
ddj-47	419	17	has	have	VERB
ddj-47	419	18	stronger	strong	ADJ
ddj-47	419	19	conditions	condition	NOUN
ddj-47	419	20	giving	give	VERB
ddj-47	419	21	(	(	PUNCT
ddj-47	419	22	y1	y1	PROPN
ddj-47	419	23	,	,	PUNCT
ddj-47	419	24	z1	z1	NOUN
ddj-47	419	25	)	)	PUNCT
ddj-47	419	26	=	=	SYM
ddj-47	419	27	(	(	PUNCT
ddj-47	419	28	z2	z2	PROPN
ddj-47	419	29	,	,	PUNCT
ddj-47	419	30	y2)c	y2)c	NOUN
ddj-47	419	31	or	or	CCONJ
ddj-47	419	32	(	(	PUNCT
ddj-47	419	33	y1	y1	PROPN
ddj-47	419	34	,	,	PUNCT
ddj-47	419	35	z1	z1	NOUN
ddj-47	419	36	)	)	PUNCT
ddj-47	419	37	=	=	SYM
ddj-47	419	38	(	(	PUNCT
ddj-47	419	39	y2	y2	PROPN
ddj-47	419	40	,	,	PUNCT
ddj-47	419	41	z2	z2	PROPN
ddj-47	419	42	)	)	PUNCT
ddj-47	419	43	.	.	PUNCT
ddj-47	420	1	5	5	X
ddj-47	420	2	.	.	X
ddj-47	420	3	t	t	PROPN
ddj-47	420	4	×	×	PROPN
ddj-47	420	5	t	t	PROPN
ddj-47	420	6	,	,	PUNCT
ddj-47	420	7	u	u	PRON
ddj-47	420	8	×	×	NOUN
ddj-47	420	9	v	v	NOUN
ddj-47	420	10	,	,	PUNCT
ddj-47	420	11	and	and	CCONJ
ddj-47	420	12	t	t	PROPN
ddj-47	420	13	×x	×x	AUX
ddj-47	420	14	correspond	correspond	ADV
ddj-47	420	15	to	to	ADP
ddj-47	420	16	pairings	pairing	NOUN
ddj-47	420	17	for	for	ADP
ddj-47	420	18	which	which	PRON
ddj-47	420	19	amino	amino	NOUN
ddj-47	420	20	-	-	PUNCT
ddj-47	420	21	acids	acid	NOUN
ddj-47	420	22	can	can	AUX
ddj-47	420	23	act	act	VERB
ddj-47	420	24	as	as	ADP
ddj-47	420	25	donor	donor	NOUN
ddj-47	420	26	or	or	CCONJ
ddj-47	420	27	acceptor	acceptor	NOUN
ddj-47	420	28	only	only	ADV
ddj-47	420	29	.	.	PUNCT
ddj-47	421	1	the	the	DET
ddj-47	421	2	triplets	triplet	NOUN
ddj-47	421	3	abc	abc	PROPN
ddj-47	421	4	in	in	ADP
ddj-47	421	5	which	which	PRON
ddj-47	421	6	(	(	PUNCT
ddj-47	421	7	a	a	DET
ddj-47	421	8	,	,	PUNCT
ddj-47	421	9	b	b	NOUN
ddj-47	421	10	)	)	PUNCT
ddj-47	421	11	belongs	belong	VERB
ddj-47	421	12	to	to	ADP
ddj-47	421	13	one	one	NUM
ddj-47	421	14	of	of	ADP
ddj-47	421	15	these	these	DET
ddj-47	421	16	sets	set	NOUN
ddj-47	421	17	should	should	AUX
ddj-47	421	18	not	not	PART
ddj-47	421	19	appear	appear	VERB
ddj-47	421	20	in	in	ADP
ddj-47	421	21	alpha	alpha	ADJ
ddj-47	421	22	helices	helix	NOUN
ddj-47	421	23	.	.	PUNCT
ddj-47	422	1	for	for	ADP
ddj-47	422	2	instance	instance	NOUN
ddj-47	422	3	,	,	PUNCT
ddj-47	422	4	for	for	ADP
ddj-47	422	5	y	y	PROPN
ddj-47	422	6	=	=	SYM
ddj-47	422	7	z	z	NOUN
ddj-47	422	8	pairing	pair	VERB
ddj-47	422	9	hydrogen	hydrogen	NOUN
ddj-47	422	10	bonded	bond	VERB
ddj-47	422	11	xmety	xmety	PROPN
ddj-47	422	12	triplets	triplet	NOUN
ddj-47	422	13	with	with	ADP
ddj-47	422	14	x	x	PROPN
ddj-47	422	15	,	,	PUNCT
ddj-47	422	16	y	y	PROPN
ddj-47	422	17	in	in	ADP
ddj-47	422	18	x12	x12	NUM
ddj-47	422	19	should	should	AUX
ddj-47	422	20	not	not	PART
ddj-47	422	21	be	be	AUX
ddj-47	422	22	possible	possible	ADJ
ddj-47	422	23	.	.	PUNCT
ddj-47	423	1	6	6	X
ddj-47	423	2	.	.	X
ddj-47	423	3	the	the	DET
ddj-47	423	4	hydrogen	hydrogen	NOUN
ddj-47	423	5	bonds	bond	NOUN
ddj-47	423	6	of	of	ADP
ddj-47	423	7	alpha	alpha	NOUN
ddj-47	423	8	helices	helix	NOUN
ddj-47	423	9	and	and	CCONJ
ddj-47	423	10	beta	beta	NOUN
ddj-47	423	11	sheets	sheet	NOUN
ddj-47	423	12	provide	provide	VERB
ddj-47	423	13	a	a	DET
ddj-47	423	14	test	test	NOUN
ddj-47	423	15	for	for	ADP
ddj-47	423	16	the	the	DET
ddj-47	423	17	model	model	NOUN
ddj-47	423	18	.	.	PUNCT
ddj-47	424	1	for	for	ADP
ddj-47	424	2	instance	instance	NOUN
ddj-47	424	3	,	,	PUNCT
ddj-47	424	4	the	the	DET
ddj-47	424	5	appearance	appearance	NOUN
ddj-47	424	6	of	of	ADP
ddj-47	424	7	gly	gly	NOUN
ddj-47	424	8	in	in	ADP
ddj-47	424	9	the	the	DET
ddj-47	424	10	hydrophobic	hydrophobic	NOUN
ddj-47	424	11	portions	portion	NOUN
ddj-47	424	12	of	of	ADP
ddj-47	424	13	alpha	alpha	NOUN
ddj-47	424	14	helices	helix	NOUN
ddj-47	424	15	is	be	AUX
ddj-47	424	16	consistent	consistent	ADJ
ddj-47	424	17	with	with	ADP
ddj-47	424	18	both	both	CCONJ
ddj-47	424	19	y	y	PROPN
ddj-47	424	20	=	=	SYM
ddj-47	424	21	zc	zc	PROPN
ddj-47	424	22	and	and	CCONJ
ddj-47	424	23	y	y	NOUN
ddj-47	424	24	=	=	SYM
ddj-47	424	25	z	z	NOUN
ddj-47	424	26	pairing	pairing	NOUN
ddj-47	424	27	.	.	PUNCT
ddj-47	425	1	the	the	DET
ddj-47	425	2	alpha	alpha	ADJ
ddj-47	425	3	helix	helix	NOUN
ddj-47	425	4	appearing	appear	VERB
ddj-47	425	5	as	as	ADP
ddj-47	425	6	an	an	DET
ddj-47	425	7	example	example	NOUN
ddj-47	425	8	in	in	ADP
ddj-47	425	9	[	[	X
ddj-47	425	10	13	13	NUM
ddj-47	425	11	]	]	PUNCT
ddj-47	425	12	is	be	AUX
ddj-47	425	13	consistent	consistent	ADJ
ddj-47	425	14	with	with	ADP
ddj-47	425	15	both	both	DET
ddj-47	425	16	options	option	NOUN
ddj-47	425	17	.	.	PUNCT
ddj-47	426	1	issn	issn	PROPN
ddj-47	426	2	:	:	PUNCT
ddj-47	426	3	2159	2159	NUM
ddj-47	426	4	-	-	SYM
ddj-47	426	5	0465	0465	NUM
ddj-47	426	6	dna	dna	PROPN
ddj-47	426	7	decipher	decipher	PROPN
ddj-47	426	8	journal	journal	PROPN
ddj-47	426	9	june	june	PROPN
ddj-47	426	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	426	11	published	publish	VERB
ddj-47	426	12	by	by	ADP
ddj-47	426	13	quantumdream	quantumdream	PROPN
ddj-47	426	14	,	,	PUNCT
ddj-47	426	15	inc	inc	PROPN
ddj-47	426	16	.	.	PROPN
ddj-47	426	17	dna	dna	PROPN
ddj-47	426	18	decipher	decipher	PROPN
ddj-47	426	19	journal	journal	NOUN
ddj-47	427	1	|	|	ADV
ddj-47	427	2	may	may	AUX
ddj-47	427	3	2013	2013	NUM
ddj-47	427	4	|	|	ADV
ddj-47	427	5	volume	volume	NOUN
ddj-47	427	6	3	3	NUM
ddj-47	427	7	|	|	NOUN
ddj-47	427	8	issue	issue	VERB
ddj-47	427	9	1	1	NUM
ddj-47	427	10	|	|	ADV
ddj-47	427	11	pp	pp	ADJ
ddj-47	427	12	.	.	PUNCT
ddj-47	428	1	58	58	NUM
ddj-47	428	2	-	-	SYM
ddj-47	428	3	88	88	NUM
ddj-47	428	4	71	71	NUM
ddj-47	428	5	pitkänen	pitkänen	NOUN
ddj-47	428	6	,	,	PUNCT
ddj-47	428	7	m.	m.	NOUN
ddj-47	428	8	,	,	PUNCT
ddj-47	428	9	a	a	DET
ddj-47	428	10	model	model	NOUN
ddj-47	428	11	for	for	ADP
ddj-47	428	12	protein	protein	NOUN
ddj-47	428	13	folding	folding	NOUN
ddj-47	428	14	and	and	CCONJ
ddj-47	428	15	biocatalysis	biocatalysis	NOUN
ddj-47	428	16	2	2	NUM
ddj-47	428	17	.	.	NOUN
ddj-47	428	18	flux	flux	NOUN
ddj-47	428	19	tube	tube	NOUN
ddj-47	428	20	is	be	AUX
ddj-47	428	21	identified	identify	VERB
ddj-47	428	22	as	as	ADP
ddj-47	428	23	hydrogen	hydrogen	NOUN
ddj-47	428	24	bond	bond	NOUN
ddj-47	428	25	the	the	DET
ddj-47	428	26	following	follow	VERB
ddj-47	428	27	table	table	NOUN
ddj-47	428	28	summarizes	summarize	NOUN
ddj-47	428	29	the	the	DET
ddj-47	428	30	allowed	allow	VERB
ddj-47	428	31	and	and	CCONJ
ddj-47	428	32	non	non	ADJ
ddj-47	428	33	-	-	ADJ
ddj-47	428	34	allowed	allow	VERB
ddj-47	428	35	pairings	pairing	NOUN
ddj-47	428	36	for	for	ADP
ddj-47	428	37	y	y	PROPN
ddj-47	428	38	(	(	PUNCT
ddj-47	428	39	n	n	CCONJ
ddj-47	428	40	)	)	PUNCT
ddj-47	428	41	=	=	SYM
ddj-47	428	42	zc(n+k	zc(n+k	PROPN
ddj-47	428	43	)	)	PUNCT
ddj-47	428	44	and	and	CCONJ
ddj-47	428	45	y	y	PROPN
ddj-47	428	46	(	(	PUNCT
ddj-47	428	47	n	n	CCONJ
ddj-47	428	48	)	)	PUNCT
ddj-47	428	49	=	=	SYM
ddj-47	428	50	z(n+k	z(n+k	NOUN
ddj-47	428	51	)	)	PUNCT
ddj-47	428	52	pairings	pairing	NOUN
ddj-47	428	53	in	in	ADP
ddj-47	428	54	this	this	DET
ddj-47	428	55	case	case	NOUN
ddj-47	428	56	.	.	PUNCT
ddj-47	429	1	the	the	DET
ddj-47	429	2	notational	notational	ADJ
ddj-47	429	3	conventions	convention	NOUN
ddj-47	429	4	are	be	AUX
ddj-47	429	5	following	follow	VERB
ddj-47	429	6	.	.	PUNCT
ddj-47	430	1	1	1	X
ddj-47	430	2	.	.	X
ddj-47	430	3	let	let	VERB
ddj-47	430	4	xij	xij	PRON
ddj-47	430	5	denote	denote	VERB
ddj-47	430	6	the	the	DET
ddj-47	430	7	amino	amino	NOUN
ddj-47	430	8	-	-	PUNCT
ddj-47	430	9	acids	acid	NOUN
ddj-47	430	10	in	in	ADP
ddj-47	430	11	i	i	PRON
ddj-47	430	12	:	:	PUNCT
ddj-47	430	13	th	th	X
ddj-47	430	14	and	and	CCONJ
ddj-47	430	15	j	j	NOUN
ddj-47	430	16	:	:	PUNCT
ddj-47	430	17	th	th	X
ddj-47	430	18	column	column	NOUN
ddj-47	430	19	of	of	ADP
ddj-47	430	20	the	the	DET
ddj-47	430	21	code	code	NOUN
ddj-47	430	22	table	table	NOUN
ddj-47	430	23	.	.	PUNCT
ddj-47	431	1	i	i	PRON
ddj-47	431	2	,	,	PUNCT
ddj-47	431	3	j	j	PROPN
ddj-47	431	4	=	=	SYM
ddj-47	431	5	1	1	NUM
ddj-47	431	6	,	,	PUNCT
ddj-47	431	7	2	2	NUM
ddj-47	431	8	corresponds	correspond	NOUN
ddj-47	431	9	to	to	ADP
ddj-47	431	10	hydrophobic	hydrophobic	VERB
ddj-47	431	11	amino	amino	NOUN
ddj-47	431	12	-	-	PUNCT
ddj-47	431	13	acid	acid	NOUN
ddj-47	431	14	residues	residue	NOUN
ddj-47	431	15	and	and	CCONJ
ddj-47	431	16	i	i	PRON
ddj-47	431	17	,	,	PUNCT
ddj-47	431	18	j=3,4	j=3,4	ADJ
ddj-47	431	19	to	to	PART
ddj-47	431	20	hydrophilic	hydrophilic	VERB
ddj-47	431	21	amino	amino	NOUN
ddj-47	431	22	-	-	PUNCT
ddj-47	431	23	acid	acid	NOUN
ddj-47	431	24	residues	residue	NOUN
ddj-47	431	25	.	.	PUNCT
ddj-47	432	1	only	only	ADV
ddj-47	432	2	the	the	DET
ddj-47	432	3	sets	set	NOUN
ddj-47	432	4	x12	x12	NUM
ddj-47	432	5	and	and	CCONJ
ddj-47	432	6	x23	x23	NUM
ddj-47	432	7	are	be	AUX
ddj-47	432	8	of	of	ADP
ddj-47	432	9	interest	interest	NOUN
ddj-47	432	10	.	.	PUNCT
ddj-47	433	1	2	2	X
ddj-47	433	2	.	.	X
ddj-47	433	3	for	for	ADP
ddj-47	433	4	y	y	PROPN
ddj-47	433	5	=	=	SYM
ddj-47	433	6	zc	zc	NOUN
ddj-47	433	7	option	option	NOUN
ddj-47	433	8	the	the	DET
ddj-47	433	9	sets	set	NOUN
ddj-47	433	10	t1	t1	PROPN
ddj-47	433	11	,	,	PUNCT
ddj-47	433	12	t2	t2	NOUN
ddj-47	433	13	,	,	PUNCT
ddj-47	433	14	v	v	NOUN
ddj-47	433	15	,	,	PUNCT
ddj-47	433	16	w	w	PROPN
ddj-47	433	17	are	be	AUX
ddj-47	433	18	defined	define	VERB
ddj-47	433	19	as	as	ADP
ddj-47	433	20	t1	t1	NOUN
ddj-47	433	21	=	=	PUNCT
ddj-47	433	22	{	{	PUNCT
ddj-47	433	23	phe	phe	NOUN
ddj-47	433	24	,	,	PUNCT
ddj-47	433	25	pro	pro	ADJ
ddj-47	433	26	}	}	PUNCT
ddj-47	433	27	,	,	PUNCT
ddj-47	433	28	t2	t2	PROPN
ddj-47	433	29	=	=	PUNCT
ddj-47	433	30	{	{	PUNCT
ddj-47	433	31	met	meet	VERB
ddj-47	433	32	,	,	PUNCT
ddj-47	433	33	pro	pro	ADJ
ddj-47	433	34	}	}	PUNCT
ddj-47	433	35	,	,	PUNCT
ddj-47	433	36	v	v	X
ddj-47	433	37	=	=	SYM
ddj-47	433	38	{	{	PUNCT
ddj-47	433	39	trp	trp	PROPN
ddj-47	433	40	,	,	PUNCT
ddj-47	433	41	gln	gln	PROPN
ddj-47	433	42	,	,	PUNCT
ddj-47	433	43	lys	lys	PROPN
ddj-47	433	44	,	,	PUNCT
ddj-47	433	45	glu	glu	NOUN
ddj-47	433	46	}	}	PUNCT
ddj-47	433	47	,	,	PUNCT
ddj-47	433	48	and	and	CCONJ
ddj-47	433	49	w	w	X
ddj-47	433	50	=	=	SYM
ddj-47	433	51	{	{	PUNCT
ddj-47	433	52	tyr	tyr	PROPN
ddj-47	433	53	,	,	PUNCT
ddj-47	433	54	his	his	PRON
ddj-47	433	55	,	,	PUNCT
ddj-47	433	56	asn	asn	PROPN
ddj-47	433	57	,	,	PUNCT
ddj-47	433	58	asp	asp	PROPN
ddj-47	433	59	,	,	PUNCT
ddj-47	433	60	cys	cys	PROPN
ddj-47	433	61	}	}	PUNCT
ddj-47	433	62	.	.	PUNCT
ddj-47	434	1	3	3	X
ddj-47	434	2	.	.	X
ddj-47	434	3	for	for	ADP
ddj-47	434	4	y	y	PROPN
ddj-47	434	5	=	=	SYM
ddj-47	434	6	z	z	NOUN
ddj-47	434	7	option	option	NOUN
ddj-47	434	8	the	the	DET
ddj-47	434	9	sets	set	NOUN
ddj-47	434	10	t1	t1	PROPN
ddj-47	434	11	,	,	PUNCT
ddj-47	434	12	t2	t2	NOUN
ddj-47	434	13	,	,	PUNCT
ddj-47	434	14	v	v	NOUN
ddj-47	434	15	,	,	PUNCT
ddj-47	434	16	w	w	PROPN
ddj-47	434	17	are	be	AUX
ddj-47	434	18	defined	define	VERB
ddj-47	434	19	as	as	ADP
ddj-47	434	20	t1	t1	NOUN
ddj-47	434	21	=	=	PUNCT
ddj-47	434	22	{	{	PUNCT
ddj-47	434	23	met	meet	VERB
ddj-47	434	24	,	,	PUNCT
ddj-47	434	25	pro	pro	ADJ
ddj-47	434	26	}	}	PUNCT
ddj-47	434	27	,	,	PUNCT
ddj-47	434	28	t2	t2	NOUN
ddj-47	434	29	=	=	SYM
ddj-47	434	30	{	{	PUNCT
ddj-47	434	31	phe	phe	NOUN
ddj-47	434	32	,	,	PUNCT
ddj-47	434	33	pro	pro	ADJ
ddj-47	434	34	}	}	PUNCT
ddj-47	434	35	,	,	PUNCT
ddj-47	434	36	v	v	X
ddj-47	434	37	=	=	SYM
ddj-47	434	38	{	{	PUNCT
ddj-47	434	39	tyr	tyr	PROPN
ddj-47	434	40	,	,	PUNCT
ddj-47	434	41	his	his	PRON
ddj-47	434	42	,	,	PUNCT
ddj-47	434	43	asn	asn	PROPN
ddj-47	434	44	,	,	PUNCT
ddj-47	434	45	asp	asp	PROPN
ddj-47	434	46	,	,	PUNCT
ddj-47	434	47	cys	cys	PROPN
ddj-47	434	48	}	}	PUNCT
ddj-47	434	49	,	,	PUNCT
ddj-47	434	50	and	and	CCONJ
ddj-47	434	51	w	w	X
ddj-47	434	52	=	=	SYM
ddj-47	434	53	{	{	PUNCT
ddj-47	434	54	trp	trp	PROPN
ddj-47	434	55	,	,	PUNCT
ddj-47	434	56	gln	gln	PROPN
ddj-47	434	57	,	,	PUNCT
ddj-47	434	58	lys	lys	PROPN
ddj-47	434	59	,	,	PUNCT
ddj-47	434	60	glu	glu	NOUN
ddj-47	434	61	}	}	PUNCT
ddj-47	434	62	.	.	PUNCT
ddj-47	435	1	ser	ser	PROPN
ddj-47	435	2	has	have	AUX
ddj-47	435	3	been	be	AUX
ddj-47	435	4	excluded	exclude	VERB
ddj-47	435	5	from	from	ADP
ddj-47	435	6	v	v	ADP
ddj-47	435	7	since	since	SCONJ
ddj-47	435	8	it	it	PRON
ddj-47	435	9	appears	appear	VERB
ddj-47	435	10	also	also	ADV
ddj-47	435	11	in	in	ADP
ddj-47	435	12	the	the	DET
ddj-47	435	13	second	second	ADJ
ddj-47	435	14	column	column	NOUN
ddj-47	435	15	of	of	ADP
ddj-47	435	16	the	the	DET
ddj-47	435	17	code	code	NOUN
ddj-47	435	18	table	table	NOUN
ddj-47	435	19	.	.	PUNCT
ddj-47	436	1	a×d	a×d	ADV
ddj-47	436	2	no	no	DET
ddj-47	436	3	flux	flux	NOUN
ddj-47	436	4	tubes	tube	VERB
ddj-47	436	5	x12	x12	NUM
ddj-47	436	6	×x12	×x12	PROPN
ddj-47	436	7	x12	x12	NUM
ddj-47	436	8	×	×	NOUN
ddj-47	436	9	t1	t1	NOUN
ddj-47	436	10	x34	x34	NOUN
ddj-47	437	1	×x34	×x34	NOUN
ddj-47	437	2	x34	x34	NOUN
ddj-47	437	3	×	×	NOUN
ddj-47	437	4	v	v	NUM
ddj-47	437	5	x12	x12	NUM
ddj-47	437	6	×x34	×x34	NOUN
ddj-47	437	7	x12	x12	NUM
ddj-47	437	8	×w	×w	VERB
ddj-47	437	9	x34	x34	NUM
ddj-47	437	10	×x12	×x12	PROPN
ddj-47	437	11	x34	x34	NOUN
ddj-47	437	12	×	×	NOUN
ddj-47	437	13	t2	t2	NOUN
ddj-47	437	14	table	table	NOUN
ddj-47	437	15	2	2	NUM
ddj-47	437	16	.	.	PUNCT
ddj-47	437	17	general	general	ADJ
ddj-47	437	18	structure	structure	NOUN
ddj-47	437	19	of	of	ADP
ddj-47	437	20	pairings	pairing	NOUN
ddj-47	437	21	for	for	ADP
ddj-47	437	22	y	y	PROPN
ddj-47	437	23	=	=	SYM
ddj-47	437	24	zc	zc	PROPN
ddj-47	437	25	and	and	CCONJ
ddj-47	437	26	y	y	NOUN
ddj-47	437	27	=	=	SYM
ddj-47	437	28	z	z	NOUN
ddj-47	437	29	options	option	NOUN
ddj-47	437	30	.	.	PUNCT
ddj-47	438	1	a	a	PRON
ddj-47	438	2	and	and	CCONJ
ddj-47	438	3	d	d	NOUN
ddj-47	438	4	refer	refer	VERB
ddj-47	438	5	to	to	ADP
ddj-47	438	6	acceptor	acceptor	NOUN
ddj-47	438	7	(	(	PUNCT
ddj-47	438	8	o	o	NOUN
ddj-47	438	9	=)	=)	X
ddj-47	438	10	and	and	CCONJ
ddj-47	438	11	donor	donor	VERB
ddj-47	438	12	n	n	PROPN
ddj-47	438	13	−h	−h	ADV
ddj-47	438	14	respectively	respectively	ADV
ddj-47	438	15	.	.	PUNCT
ddj-47	439	1	only	only	ADV
ddj-47	439	2	non	non	ADJ
ddj-47	439	3	-	-	ADJ
ddj-47	439	4	allowed	allow	VERB
ddj-47	439	5	hydrogen	hydrogen	NOUN
ddj-47	439	6	bonded	bond	VERB
ddj-47	439	7	pairs	pair	NOUN
ddj-47	439	8	are	be	AUX
ddj-47	439	9	listed	list	VERB
ddj-47	439	10	.	.	PUNCT
ddj-47	440	1	some	some	PRON
ddj-47	440	2	clarifying	clarify	VERB
ddj-47	440	3	comments	comment	NOUN
ddj-47	440	4	about	about	ADP
ddj-47	440	5	the	the	DET
ddj-47	440	6	table	table	NOUN
ddj-47	440	7	are	be	AUX
ddj-47	440	8	in	in	ADP
ddj-47	440	9	order	order	NOUN
ddj-47	440	10	.	.	PUNCT
ddj-47	441	1	1	1	X
ddj-47	441	2	.	.	X
ddj-47	442	1	the	the	DET
ddj-47	442	2	two	two	NUM
ddj-47	442	3	options	option	NOUN
ddj-47	442	4	are	be	AUX
ddj-47	442	5	related	relate	VERB
ddj-47	442	6	by	by	ADP
ddj-47	442	7	the	the	DET
ddj-47	442	8	duality	duality	NOUN
ddj-47	442	9	t1	t1	NOUN
ddj-47	442	10	↔	↔	PROPN
ddj-47	442	11	t2	t2	NOUN
ddj-47	442	12	,	,	PUNCT
ddj-47	442	13	v	v	ADP
ddj-47	442	14	↔	↔	PROPN
ddj-47	442	15	w	w	X
ddj-47	442	16	.	.	PUNCT
ddj-47	443	1	pro	pro	PROPN
ddj-47	443	2	appears	appear	VERB
ddj-47	443	3	in	in	ADP
ddj-47	443	4	the	the	DET
ddj-47	443	5	list	list	NOUN
ddj-47	443	6	because	because	SCONJ
ddj-47	443	7	it	it	PRON
ddj-47	443	8	contains	contain	VERB
ddj-47	443	9	no	no	DET
ddj-47	443	10	n	n	NOUN
ddj-47	443	11	−h	−h	ADJ
ddj-47	443	12	group	group	NOUN
ddj-47	443	13	and	and	CCONJ
ddj-47	443	14	can	can	AUX
ddj-47	443	15	not	not	PART
ddj-47	443	16	therefore	therefore	ADV
ddj-47	443	17	act	act	VERB
ddj-47	443	18	as	as	ADP
ddj-47	443	19	donor	donor	NOUN
ddj-47	443	20	.	.	PUNCT
ddj-47	444	1	the	the	DET
ddj-47	444	2	fact	fact	NOUN
ddj-47	444	3	that	that	SCONJ
ddj-47	444	4	pro	pro	ADV
ddj-47	444	5	often	often	ADV
ddj-47	444	6	appears	appear	VERB
ddj-47	444	7	as	as	ADP
ddj-47	444	8	first	first	ADJ
ddj-47	444	9	amino	amino	NOUN
ddj-47	444	10	-	-	PUNCT
ddj-47	444	11	acid	acid	NOUN
ddj-47	444	12	in	in	ADP
ddj-47	444	13	alpha	alpha	ADJ
ddj-47	444	14	helix	helix	NOUN
ddj-47	444	15	conforms	conform	VERB
ddj-47	444	16	with	with	ADP
ddj-47	444	17	this	this	PRON
ddj-47	444	18	.	.	PUNCT
ddj-47	445	1	2	2	X
ddj-47	445	2	.	.	X
ddj-47	445	3	the	the	DET
ddj-47	445	4	codons	codon	NOUN
ddj-47	445	5	coding	code	VERB
ddj-47	445	6	for	for	ADP
ddj-47	445	7	the	the	DET
ddj-47	445	8	paired	pair	VERB
ddj-47	445	9	amino	amino	NOUN
ddj-47	445	10	-	-	PUNCT
ddj-47	445	11	acid	acid	NOUN
ddj-47	445	12	give	give	VERB
ddj-47	445	13	additional	additional	ADJ
ddj-47	445	14	strong	strong	ADJ
ddj-47	445	15	limitations	limitation	NOUN
ddj-47	445	16	on	on	ADP
ddj-47	445	17	the	the	DET
ddj-47	445	18	pairing	pairing	NOUN
ddj-47	445	19	unless	unless	SCONJ
ddj-47	445	20	z	z	NOUN
ddj-47	445	21	corresponds	correspond	VERB
ddj-47	445	22	to	to	ADP
ddj-47	445	23	quantum	quantum	ADJ
ddj-47	445	24	superposition	superposition	NOUN
ddj-47	445	25	of	of	ADP
ddj-47	445	26	quark	quark	ADJ
ddj-47	445	27	pairs	pair	NOUN
ddj-47	445	28	associated	associate	VERB
ddj-47	445	29	with	with	ADP
ddj-47	445	30	the	the	DET
ddj-47	445	31	third	third	ADJ
ddj-47	445	32	nucleotide	nucleotide	NOUN
ddj-47	445	33	for	for	ADP
ddj-47	445	34	the	the	DET
ddj-47	445	35	codons	codon	NOUN
ddj-47	445	36	coding	code	VERB
ddj-47	445	37	for	for	ADP
ddj-47	445	38	the	the	DET
ddj-47	445	39	amino	amino	NOUN
ddj-47	445	40	-	-	PUNCT
ddj-47	445	41	acid	acid	NOUN
ddj-47	445	42	.	.	PUNCT
ddj-47	446	1	this	this	PRON
ddj-47	446	2	could	could	AUX
ddj-47	446	3	be	be	AUX
ddj-47	446	4	interpreted	interpret	VERB
ddj-47	446	5	as	as	ADP
ddj-47	446	6	counterpart	counterpart	NOUN
ddj-47	446	7	of	of	ADP
ddj-47	446	8	wobble	wobble	ADJ
ddj-47	446	9	base	base	NOUN
ddj-47	446	10	pairing	pairing	NOUN
ddj-47	446	11	.	.	PUNCT
ddj-47	447	1	3	3	X
ddj-47	447	2	.	.	NUM
ddj-47	447	3	met	meet	VERB
ddj-47	447	4	(	(	PUNCT
ddj-47	447	5	contains	contain	VERB
ddj-47	447	6	s	s	NOUN
ddj-47	447	7	)	)	PUNCT
ddj-47	447	8	,	,	PUNCT
ddj-47	447	9	pro	pro	ADJ
ddj-47	447	10	,	,	PUNCT
ddj-47	447	11	and	and	CCONJ
ddj-47	447	12	phe	phe	NOUN
ddj-47	447	13	(	(	PUNCT
ddj-47	447	14	only	only	ADV
ddj-47	447	15	amino	amino	NOUN
ddj-47	447	16	-	-	PUNCT
ddj-47	447	17	acid	acid	NOUN
ddj-47	447	18	with	with	ADP
ddj-47	447	19	aromatic	aromatic	ADJ
ddj-47	447	20	ring	ring	NOUN
ddj-47	447	21	in	in	ADP
ddj-47	447	22	x12	x12	NUM
ddj-47	447	23	)	)	PUNCT
ddj-47	447	24	are	be	AUX
ddj-47	447	25	exceptional	exceptional	ADJ
ddj-47	447	26	for	for	ADP
ddj-47	447	27	both	both	DET
ddj-47	447	28	options	option	NOUN
ddj-47	447	29	.	.	PUNCT
ddj-47	448	1	x12×	x12×	PROPN
ddj-47	448	2	t1	t1	PROPN
ddj-47	448	3	and	and	CCONJ
ddj-47	448	4	x34×	x34×	NOUN
ddj-47	448	5	t2	t2	PROPN
ddj-47	448	6	=	=	SYM
ddj-47	448	7	o−−(h	o−−(h	NOUN
ddj-47	448	8	−n	−n	NOUN
ddj-47	448	9	)	)	PUNCT
ddj-47	448	10	hydrogen	hydrogen	NOUN
ddj-47	448	11	bonding	bonding	NOUN
ddj-47	448	12	is	be	AUX
ddj-47	448	13	forbidden	forbid	VERB
ddj-47	448	14	.	.	PUNCT
ddj-47	449	1	this	this	PRON
ddj-47	449	2	poses	pose	VERB
ddj-47	449	3	strong	strong	ADJ
ddj-47	449	4	conditions	condition	NOUN
ddj-47	449	5	at	at	ADP
ddj-47	449	6	the	the	DET
ddj-47	449	7	boundaries	boundary	NOUN
ddj-47	449	8	of	of	ADP
ddj-47	449	9	hydrophilic	hydrophilic	ADJ
ddj-47	449	10	and	and	CCONJ
ddj-47	449	11	hydrophobic	hydrophobic	NOUN
ddj-47	449	12	regions	region	NOUN
ddj-47	449	13	.	.	PUNCT
ddj-47	450	1	one	one	PRON
ddj-47	450	2	might	might	AUX
ddj-47	450	3	hope	hope	VERB
ddj-47	450	4	that	that	SCONJ
ddj-47	450	5	either	either	PRON
ddj-47	450	6	of	of	ADP
ddj-47	450	7	these	these	DET
ddj-47	450	8	models	model	NOUN
ddj-47	450	9	could	could	AUX
ddj-47	450	10	give	give	VERB
ddj-47	450	11	a	a	DET
ddj-47	450	12	solution	solution	NOUN
ddj-47	450	13	to	to	ADP
ddj-47	450	14	the	the	DET
ddj-47	450	15	basic	basic	ADJ
ddj-47	450	16	problem	problem	NOUN
ddj-47	450	17	of	of	ADP
ddj-47	450	18	proteonics	proteonic	NOUN
ddj-47	450	19	whether	whether	SCONJ
ddj-47	450	20	genes	gene	NOUN
ddj-47	450	21	code	code	VERB
ddj-47	450	22	for	for	ADP
ddj-47	450	23	the	the	DET
ddj-47	450	24	protein	protein	NOUN
ddj-47	450	25	folding	fold	VERB
ddj-47	450	26	and	and	CCONJ
ddj-47	450	27	how	how	SCONJ
ddj-47	450	28	:	:	PUNCT
ddj-47	450	29	the	the	DET
ddj-47	450	30	apparently	apparently	ADV
ddj-47	450	31	lost	lose	VERB
ddj-47	450	32	information	information	NOUN
ddj-47	450	33	in	in	ADP
ddj-47	450	34	the	the	DET
ddj-47	450	35	mapping	mapping	NOUN
ddj-47	450	36	of	of	ADP
ddj-47	450	37	codons	codon	NOUN
ddj-47	450	38	to	to	ADP
ddj-47	450	39	aminoacids	aminoacid	NOUN
ddj-47	450	40	codes	code	NOUN
ddj-47	450	41	for	for	ADP
ddj-47	450	42	the	the	DET
ddj-47	450	43	folding	fold	VERB
ddj-47	450	44	determined	determine	VERB
ddj-47	450	45	hydrogen	hydrogen	NOUN
ddj-47	450	46	bonds	bond	NOUN
ddj-47	450	47	and	and	CCONJ
ddj-47	450	48	more	more	ADJ
ddj-47	450	49	general	general	ADJ
ddj-47	450	50	flux	flux	NOUN
ddj-47	450	51	tubes	tube	NOUN
ddj-47	450	52	.	.	PUNCT
ddj-47	451	1	the	the	DET
ddj-47	451	2	hydrogen	hydrogen	NOUN
ddj-47	451	3	bonds	bond	NOUN
ddj-47	451	4	of	of	ADP
ddj-47	451	5	alpha	alpha	NOUN
ddj-47	451	6	helices	helix	NOUN
ddj-47	451	7	and	and	CCONJ
ddj-47	451	8	beta	beta	NOUN
ddj-47	451	9	sheets	sheet	NOUN
ddj-47	451	10	provide	provide	VERB
ddj-47	451	11	a	a	DET
ddj-47	451	12	test	test	NOUN
ddj-47	451	13	for	for	ADP
ddj-47	451	14	the	the	DET
ddj-47	451	15	model	model	NOUN
ddj-47	451	16	.	.	PUNCT
ddj-47	452	1	in	in	ADP
ddj-47	452	2	absence	absence	NOUN
ddj-47	452	3	of	of	ADP
ddj-47	452	4	quantum	quantum	ADJ
ddj-47	452	5	counterpart	counterpart	NOUN
ddj-47	452	6	of	of	ADP
ddj-47	452	7	wobble	wobble	ADJ
ddj-47	452	8	base	base	NOUN
ddj-47	452	9	pairing	pair	VERB
ddj-47	452	10	for	for	ADP
ddj-47	452	11	z	z	NOUN
ddj-47	452	12	both	both	DET
ddj-47	452	13	models	model	NOUN
ddj-47	452	14	allows	allow	VERB
ddj-47	452	15	to	to	PART
ddj-47	452	16	deduce	deduce	VERB
ddj-47	452	17	from	from	ADP
ddj-47	452	18	the	the	DET
ddj-47	452	19	mere	mere	ADJ
ddj-47	452	20	aminoacid	aminoacid	NOUN
ddj-47	452	21	sequence	sequence	NOUN
ddj-47	452	22	and	and	CCONJ
ddj-47	452	23	hydrogen	hydrogen	NOUN
ddj-47	452	24	bonding	bonding	NOUN
ddj-47	452	25	the	the	DET
ddj-47	452	26	dna	dna	PROPN
ddj-47	452	27	sequence	sequence	NOUN
ddj-47	452	28	coding	code	VERB
ddj-47	452	29	for	for	ADP
ddj-47	452	30	the	the	DET
ddj-47	452	31	protein	protein	NOUN
ddj-47	452	32	in	in	ADP
ddj-47	452	33	the	the	DET
ddj-47	452	34	case	case	NOUN
ddj-47	452	35	of	of	ADP
ddj-47	452	36	alpha	alpha	NOUN
ddj-47	452	37	helices	helix	NOUN
ddj-47	452	38	and	and	CCONJ
ddj-47	452	39	presumably	presumably	ADV
ddj-47	452	40	also	also	ADV
ddj-47	452	41	beta	beta	ADJ
ddj-47	452	42	sheets	sheet	NOUN
ddj-47	452	43	.	.	PUNCT
ddj-47	453	1	this	this	PRON
ddj-47	453	2	is	be	AUX
ddj-47	453	3	of	of	ADP
ddj-47	453	4	course	course	NOUN
ddj-47	453	5	a	a	DET
ddj-47	453	6	testable	testable	ADJ
ddj-47	453	7	prediction	prediction	NOUN
ddj-47	453	8	.	.	PUNCT
ddj-47	454	1	for	for	ADP
ddj-47	454	2	non	non	ADJ
ddj-47	454	3	-	-	ADJ
ddj-47	454	4	hydrogen	hydrogen	ADJ
ddj-47	454	5	bonded	bond	VERB
ddj-47	454	6	portions	portion	NOUN
ddj-47	454	7	of	of	ADP
ddj-47	454	8	protein	protein	NOUN
ddj-47	454	9	this	this	PRON
ddj-47	454	10	might	might	AUX
ddj-47	454	11	not	not	PART
ddj-47	454	12	be	be	AUX
ddj-47	454	13	possible	possible	ADJ
ddj-47	454	14	and	and	CCONJ
ddj-47	454	15	an	an	DET
ddj-47	454	16	interesting	interesting	ADJ
ddj-47	454	17	question	question	NOUN
ddj-47	454	18	is	be	AUX
ddj-47	454	19	whether	whether	SCONJ
ddj-47	454	20	they	they	PRON
ddj-47	454	21	tend	tend	VERB
ddj-47	454	22	to	to	PART
ddj-47	454	23	consist	consist	VERB
ddj-47	454	24	of	of	ADP
ddj-47	454	25	aminoacids	aminoacid	NOUN
ddj-47	454	26	in	in	ADP
ddj-47	454	27	sets	set	NOUN
ddj-47	454	28	t	t	PROPN
ddj-47	454	29	,	,	PUNCT
ddj-47	454	30	v	v	NOUN
ddj-47	454	31	and	and	CCONJ
ddj-47	454	32	t∪x	t∪x	VERB
ddj-47	454	33	so	so	SCONJ
ddj-47	454	34	that	that	SCONJ
ddj-47	454	35	hydrogen	hydrogen	NOUN
ddj-47	454	36	bonds	bond	NOUN
ddj-47	454	37	are	be	AUX
ddj-47	454	38	not	not	PART
ddj-47	454	39	allowed	allow	VERB
ddj-47	454	40	.	.	PUNCT
ddj-47	455	1	in	in	ADP
ddj-47	455	2	any	any	DET
ddj-47	455	3	case	case	NOUN
ddj-47	455	4	this	this	PRON
ddj-47	455	5	would	would	AUX
ddj-47	455	6	mean	mean	VERB
ddj-47	455	7	a	a	DET
ddj-47	455	8	solution	solution	NOUN
ddj-47	455	9	to	to	ADP
ddj-47	455	10	the	the	DET
ddj-47	455	11	basic	basic	ADJ
ddj-47	455	12	problem	problem	NOUN
ddj-47	455	13	of	of	ADP
ddj-47	455	14	proteomics	proteomic	NOUN
ddj-47	455	15	whether	whether	SCONJ
ddj-47	455	16	genes	gene	NOUN
ddj-47	455	17	code	code	VERB
ddj-47	455	18	for	for	SCONJ
ddj-47	455	19	the	the	DET
ddj-47	455	20	protein	protein	NOUN
ddj-47	455	21	folding	fold	VERB
ddj-47	455	22	and	and	CCONJ
ddj-47	455	23	how	how	SCONJ
ddj-47	455	24	:	:	PUNCT
ddj-47	455	25	the	the	DET
ddj-47	455	26	apparently	apparently	ADV
ddj-47	455	27	lost	lose	VERB
ddj-47	455	28	information	information	NOUN
ddj-47	455	29	in	in	ADP
ddj-47	455	30	the	the	DET
ddj-47	455	31	mapping	mapping	NOUN
ddj-47	455	32	of	of	ADP
ddj-47	455	33	codons	codon	NOUN
ddj-47	455	34	to	to	ADP
ddj-47	455	35	amino	amino	NOUN
ddj-47	455	36	-	-	PUNCT
ddj-47	455	37	acids	acid	NOUN
ddj-47	455	38	codes	code	NOUN
ddj-47	455	39	for	for	ADP
ddj-47	455	40	the	the	DET
ddj-47	455	41	folding	fold	VERB
ddj-47	455	42	determined	determine	VERB
ddj-47	455	43	hydrogen	hydrogen	NOUN
ddj-47	455	44	bonds	bond	NOUN
ddj-47	455	45	and	and	CCONJ
ddj-47	455	46	more	more	ADJ
ddj-47	455	47	general	general	ADJ
ddj-47	455	48	flux	flux	NOUN
ddj-47	455	49	tubes	tube	NOUN
ddj-47	455	50	.	.	PUNCT
ddj-47	456	1	3.3.3	3.3.3	NUM
ddj-47	456	2	tests	test	VERB
ddj-47	456	3	for	for	ADP
ddj-47	456	4	y	y	PROPN
ddj-47	456	5	=	=	PROPN
ddj-47	456	6	z	z	PROPN
ddj-47	456	7	and	and	CCONJ
ddj-47	456	8	y	y	PROPN
ddj-47	456	9	=	=	NOUN
ddj-47	456	10	zc	zc	NOUN
ddj-47	456	11	pairings	pairing	NOUN
ddj-47	456	12	the	the	DET
ddj-47	456	13	test	test	NOUN
ddj-47	456	14	consists	consist	VERB
ddj-47	456	15	of	of	ADP
ddj-47	456	16	deducing	deduce	VERB
ddj-47	456	17	the	the	DET
ddj-47	456	18	number	number	NOUN
ddj-47	456	19	n	n	ADP
ddj-47	456	20	of	of	ADP
ddj-47	456	21	pairs	pair	NOUN
ddj-47	456	22	which	which	PRON
ddj-47	456	23	did	do	AUX
ddj-47	456	24	not	not	PART
ddj-47	456	25	satisfy	satisfy	VERB
ddj-47	456	26	the	the	DET
ddj-47	456	27	condition	condition	NOUN
ddj-47	456	28	(	(	PUNCT
ddj-47	456	29	a(ii	a(ii	PROPN
ddj-47	456	30	)	)	PUNCT
ddj-47	456	31	,	,	PUNCT
ddj-47	456	32	a(ii+	a(ii+	ADV
ddj-47	456	33	4	4	NUM
ddj-47	456	34	)	)	PUNCT
ddj-47	456	35	)	)	PUNCT
ddj-47	456	36	not	not	PART
ddj-47	456	37	equal	equal	ADJ
ddj-47	456	38	to	to	ADP
ddj-47	456	39	(	(	PUNCT
ddj-47	456	40	t	t	PROPN
ddj-47	456	41	,	,	PUNCT
ddj-47	456	42	t	t	PROPN
ddj-47	456	43	)	)	PUNCT
ddj-47	456	44	,	,	PUNCT
ddj-47	456	45	or	or	CCONJ
ddj-47	456	46	does	do	AUX
ddj-47	456	47	not	not	PART
ddj-47	456	48	belong	belong	VERB
ddj-47	456	49	to	to	ADP
ddj-47	456	50	(	(	PUNCT
ddj-47	456	51	v	v	NUM
ddj-47	456	52	×	×	NOUN
ddj-47	456	53	v	v	NOUN
ddj-47	456	54	)	)	PUNCT
ddj-47	456	55	or	or	CCONJ
ddj-47	456	56	to	to	ADP
ddj-47	456	57	t×	t×	NOUN
ddj-47	456	58	v	v	NOUN
ddj-47	456	59	)	)	PUNCT
ddj-47	456	60	.	.	PUNCT
ddj-47	457	1	from	from	ADP
ddj-47	457	2	this	this	PRON
ddj-47	457	3	the	the	DET
ddj-47	457	4	average	average	ADJ
ddj-47	457	5	length	length	NOUN
ddj-47	457	6	l	l	NOUN
ddj-47	457	7	of	of	ADP
ddj-47	457	8	portions	portion	NOUN
ddj-47	457	9	satisfying	satisfy	VERB
ddj-47	457	10	alpha	alpha	NOUN
ddj-47	457	11	helix	helix	NOUN
ddj-47	457	12	conditions	condition	NOUN
ddj-47	457	13	k	k	NOUN
ddj-47	457	14	=	=	SYM
ddj-47	457	15	4	4	NUM
ddj-47	457	16	can	can	AUX
ddj-47	457	17	be	be	AUX
ddj-47	457	18	deduced	deduce	VERB
ddj-47	457	19	as	as	ADP
ddj-47	457	20	l	l	NOUN
ddj-47	457	21	=	=	SYM
ddj-47	457	22	n	n	CCONJ
ddj-47	457	23	/	/	SYM
ddj-47	457	24	ntot	ntot	PROPN
ddj-47	457	25	,	,	PUNCT
ddj-47	457	26	where	where	SCONJ
ddj-47	457	27	ntot	ntot	NOUN
ddj-47	457	28	is	be	AUX
ddj-47	457	29	the	the	DET
ddj-47	457	30	number	number	NOUN
ddj-47	457	31	of	of	ADP
ddj-47	457	32	amino	amino	NOUN
ddj-47	457	33	-	-	PUNCT
ddj-47	457	34	acids	acid	NOUN
ddj-47	457	35	in	in	ADP
ddj-47	457	36	the	the	DET
ddj-47	457	37	sequence	sequence	NOUN
ddj-47	457	38	.	.	PUNCT
ddj-47	458	1	the	the	DET
ddj-47	458	2	test	test	NOUN
ddj-47	458	3	was	be	AUX
ddj-47	458	4	carried	carry	VERB
ddj-47	458	5	out	out	ADP
ddj-47	458	6	for	for	ADP
ddj-47	458	7	one	one	NUM
ddj-47	458	8	structural	structural	ADJ
ddj-47	458	9	unit	unit	NOUN
ddj-47	458	10	of	of	ADP
ddj-47	458	11	asparagine	asparagine	NOUN
ddj-47	458	12	synthetase	synthetase	NOUN
ddj-47	459	1	[	[	X
ddj-47	459	2	2	2	NUM
ddj-47	459	3	]	]	PUNCT
ddj-47	459	4	,	,	PUNCT
ddj-47	459	5	xylose	xylose	PROPN
ddj-47	459	6	isomerase	isomerase	NOUN
ddj-47	459	7	[	[	X
ddj-47	459	8	11	11	NUM
ddj-47	459	9	]	]	PUNCT
ddj-47	459	10	,	,	PUNCT
ddj-47	459	11	hydrolase	hydrolase	NOUN
ddj-47	459	12	[	[	X
ddj-47	459	13	8	8	NUM
ddj-47	459	14	]	]	PUNCT
ddj-47	459	15	,	,	PUNCT
ddj-47	459	16	glutathione	glutathione	NOUN
ddj-47	459	17	s	s	NOUN
ddj-47	459	18	-	-	NOUN
ddj-47	459	19	transferase	transferase	NOUN
ddj-47	459	20	[	[	X
ddj-47	459	21	7	7	NUM
ddj-47	459	22	]	]	PUNCT
ddj-47	459	23	,	,	PUNCT
ddj-47	459	24	and	and	CCONJ
ddj-47	459	25	restriction	restriction	NOUN
ddj-47	459	26	endonuclease	endonuclease	NOUN
ddj-47	459	27	bamhi	bamhi	VERB
ddj-47	460	1	[	[	X
ddj-47	460	2	3	3	NUM
ddj-47	460	3	]	]	PUNCT
ddj-47	460	4	.	.	PUNCT
ddj-47	461	1	1	1	X
ddj-47	461	2	.	.	X
ddj-47	461	3	option	option	NOUN
ddj-47	461	4	1	1	NUM
ddj-47	461	5	:	:	PUNCT
ddj-47	461	6	flux	flux	NOUN
ddj-47	461	7	tube	tube	NOUN
ddj-47	461	8	from	from	ADP
ddj-47	461	9	in	in	ADP
ddj-47	461	10	direction	direction	NOUN
ddj-47	461	11	is	be	AUX
ddj-47	461	12	prerequisite	prerequisite	NOUN
ddj-47	461	13	for	for	ADP
ddj-47	461	14	the	the	DET
ddj-47	461	15	formation	formation	NOUN
ddj-47	461	16	of	of	ADP
ddj-47	461	17	hydrogen	hydrogen	NOUN
ddj-47	461	18	bond	bond	NOUN
ddj-47	461	19	issn	issn	NOUN
ddj-47	461	20	:	:	PUNCT
ddj-47	461	21	2159	2159	NUM
ddj-47	461	22	-	-	SYM
ddj-47	461	23	0465	0465	NUM
ddj-47	461	24	dna	dna	PROPN
ddj-47	461	25	decipher	decipher	PROPN
ddj-47	461	26	journal	journal	PROPN
ddj-47	461	27	june	june	PROPN
ddj-47	461	28	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	461	29	published	publish	VERB
ddj-47	461	30	by	by	ADP
ddj-47	461	31	quantumdream	quantumdream	PROPN
ddj-47	461	32	,	,	PUNCT
ddj-47	461	33	inc	inc	PROPN
ddj-47	461	34	.	.	PROPN
ddj-47	461	35	dna	dna	PROPN
ddj-47	461	36	decipher	decipher	PROPN
ddj-47	461	37	journal	journal	NOUN
ddj-47	461	38	|	|	ADV
ddj-47	461	39	may	may	AUX
ddj-47	461	40	2013	2013	NUM
ddj-47	461	41	|	|	ADV
ddj-47	461	42	volume	volume	NOUN
ddj-47	461	43	3	3	NUM
ddj-47	461	44	|	|	NOUN
ddj-47	461	45	issue	issue	VERB
ddj-47	461	46	1	1	NUM
ddj-47	462	1	|	|	ADV
ddj-47	462	2	pp	pp	ADJ
ddj-47	462	3	.	.	PUNCT
ddj-47	463	1	58	58	NUM
ddj-47	463	2	-	-	SYM
ddj-47	463	3	88	88	NUM
ddj-47	463	4	72	72	NUM
ddj-47	463	5	pitkänen	pitkänen	NOUN
ddj-47	463	6	,	,	PUNCT
ddj-47	463	7	m.	m.	NOUN
ddj-47	463	8	,	,	PUNCT
ddj-47	463	9	a	a	DET
ddj-47	463	10	model	model	NOUN
ddj-47	463	11	for	for	ADP
ddj-47	463	12	protein	protein	NOUN
ddj-47	463	13	folding	folding	NOUN
ddj-47	463	14	and	and	CCONJ
ddj-47	463	15	biocatalysis	biocatalysis	NOUN
ddj-47	463	16	the	the	DET
ddj-47	463	17	table	table	NOUN
ddj-47	463	18	below	below	ADV
ddj-47	463	19	represents	represent	VERB
ddj-47	463	20	the	the	DET
ddj-47	463	21	results	result	NOUN
ddj-47	463	22	of	of	ADP
ddj-47	463	23	the	the	DET
ddj-47	463	24	test	test	NOUN
ddj-47	463	25	when	when	SCONJ
ddj-47	463	26	flux	flux	NOUN
ddj-47	463	27	tube	tube	NOUN
ddj-47	463	28	from	from	ADP
ddj-47	463	29	y	y	PROPN
ddj-47	463	30	(	(	PUNCT
ddj-47	463	31	n	n	CCONJ
ddj-47	463	32	)	)	PUNCT
ddj-47	463	33	to	to	ADP
ddj-47	463	34	z(n	z(n	PROPN
ddj-47	463	35	+	+	CCONJ
ddj-47	463	36	k	k	X
ddj-47	463	37	)	)	PUNCT
ddj-47	463	38	or	or	CCONJ
ddj-47	463	39	from	from	ADP
ddj-47	463	40	z(n	z(n	NOUN
ddj-47	463	41	)	)	PUNCT
ddj-47	463	42	to	to	ADP
ddj-47	463	43	y	y	PROPN
ddj-47	463	44	(	(	PUNCT
ddj-47	463	45	n+	n+	X
ddj-47	463	46	k	k	X
ddj-47	463	47	)	)	PUNCT
ddj-47	463	48	is	be	AUX
ddj-47	463	49	prerequisite	prerequisite	NOUN
ddj-47	463	50	for	for	ADP
ddj-47	463	51	hydrogen	hydrogen	NOUN
ddj-47	463	52	bond	bond	NOUN
ddj-47	463	53	.	.	PUNCT
ddj-47	464	1	protein	protein	NOUN
ddj-47	464	2	l(3	l(3	PROPN
ddj-47	464	3	)	)	PUNCT
ddj-47	464	4	l(4	l(4	PROPN
ddj-47	464	5	)	)	PUNCT
ddj-47	464	6	l(5	l(5	PROPN
ddj-47	464	7	)	)	PUNCT
ddj-47	464	8	l(6	l(6	PROPN
ddj-47	464	9	)	)	PUNCT
ddj-47	464	10	asparagin	asparagin	NOUN
ddj-47	464	11	synthethase	synthethase	NOUN
ddj-47	464	12	y	y	PROPN
ddj-47	464	13	=	=	SYM
ddj-47	464	14	zc	zc	PROPN
ddj-47	464	15	11.8	11.8	NUM
ddj-47	464	16	15.0	15.0	NUM
ddj-47	464	17	12.2	12.2	NUM
ddj-47	464	18	13.2	13.2	NUM
ddj-47	464	19	y	y	NOUN
ddj-47	464	20	=	=	PUNCT
ddj-47	464	21	z	z	PROPN
ddj-47	464	22	55.0	55.0	NUM
ddj-47	464	23	47.1	47.1	NUM
ddj-47	464	24	47.1	47.1	NUM
ddj-47	464	25	47.1	47.1	NUM
ddj-47	464	26	xylose	xylose	NOUN
ddj-47	464	27	isomerase	isomerase	NOUN
ddj-47	464	28	y	y	PROPN
ddj-47	464	29	=	=	SYM
ddj-47	464	30	zc	zc	PROPN
ddj-47	464	31	10.2	10.2	NUM
ddj-47	464	32	9.7	9.7	NUM
ddj-47	464	33	12.4	12.4	NUM
ddj-47	464	34	11.3	11.3	NUM
ddj-47	464	35	y	y	NOUN
ddj-47	464	36	=	=	PUNCT
ddj-47	464	37	z	z	PROPN
ddj-47	465	1	24.8	24.8	NUM
ddj-47	465	2	24.8	24.8	NUM
ddj-47	465	3	16.5	16.5	NUM
ddj-47	465	4	26.4	26.4	NUM
ddj-47	465	5	hydrolase	hydrolase	NOUN
ddj-47	465	6	y	y	PROPN
ddj-47	465	7	=	=	SYM
ddj-47	465	8	zc	zc	PROPN
ddj-47	465	9	13.8	13.8	NUM
ddj-47	465	10	18.4	18.4	NUM
ddj-47	465	11	16.6	16.6	NUM
ddj-47	465	12	12.8	12.8	NUM
ddj-47	465	13	y	y	NOUN
ddj-47	465	14	=	=	PUNCT
ddj-47	465	15	z	z	PROPN
ddj-47	465	16	55.3	55.3	NUM
ddj-47	465	17	20.8	20.8	NUM
ddj-47	465	18	33.2	33.2	NUM
ddj-47	465	19	27.7	27.7	NUM
ddj-47	465	20	glutathione	glutathione	NOUN
ddj-47	465	21	s	s	NOUN
ddj-47	465	22	-	-	NOUN
ddj-47	466	1	transferase	transferase	NOUN
ddj-47	466	2	y	y	NOUN
ddj-47	466	3	=	=	SYM
ddj-47	466	4	zc	zc	PROPN
ddj-47	467	1	12.4	12.4	NUM
ddj-47	467	2	12.4	12.4	NUM
ddj-47	467	3	13.1	13.1	NUM
ddj-47	467	4	15.0	15.0	NUM
ddj-47	467	5	y	y	NOUN
ddj-47	467	6	=	=	PUNCT
ddj-47	467	7	z	z	PROPN
ddj-47	467	8	35.0	35.0	NUM
ddj-47	467	9	35.0	35.0	NUM
ddj-47	467	10	26.3	26.3	NUM
ddj-47	467	11	30.0	30.0	NUM
ddj-47	467	12	bamhi	bamhi	VERB
ddj-47	467	13	y	y	NOUN
ddj-47	467	14	=	=	SYM
ddj-47	467	15	zc	zc	PROPN
ddj-47	467	16	9.7	9.7	NUM
ddj-47	467	17	8.5	8.5	NUM
ddj-47	467	18	10.7	10.7	NUM
ddj-47	467	19	10.7	10.7	NUM
ddj-47	467	20	y	y	NOUN
ddj-47	467	21	=	=	PUNCT
ddj-47	467	22	z	z	PROPN
ddj-47	467	23	30.4	30.4	NUM
ddj-47	467	24	23.7	23.7	NUM
ddj-47	467	25	30.4	30.4	NUM
ddj-47	467	26	35.5	35.5	NUM
ddj-47	467	27	table	table	NOUN
ddj-47	467	28	3	3	NUM
ddj-47	467	29	.	.	PUNCT
ddj-47	468	1	the	the	DET
ddj-47	468	2	average	average	ADJ
ddj-47	468	3	number	number	NOUN
ddj-47	468	4	l(k	l(k	PROPN
ddj-47	468	5	)	)	PUNCT
ddj-47	468	6	of	of	ADP
ddj-47	468	7	aminoacids	aminoacid	NOUN
ddj-47	468	8	in	in	ADP
ddj-47	468	9	the	the	DET
ddj-47	468	10	portion	portion	NOUN
ddj-47	468	11	of	of	ADP
ddj-47	468	12	amino	amino	NOUN
ddj-47	468	13	-	-	PUNCT
ddj-47	468	14	acid	acid	NOUN
ddj-47	468	15	sequence	sequence	NOUN
ddj-47	468	16	satisfying	satisfy	VERB
ddj-47	468	17	the	the	DET
ddj-47	468	18	conditions	condition	NOUN
ddj-47	468	19	making	make	VERB
ddj-47	468	20	possible	possible	ADJ
ddj-47	468	21	(	(	PUNCT
ddj-47	468	22	n	n	CCONJ
ddj-47	468	23	,	,	PUNCT
ddj-47	468	24	n+	n+	X
ddj-47	468	25	k	k	X
ddj-47	468	26	)	)	PUNCT
ddj-47	468	27	hydrogen	hydrogen	NOUN
ddj-47	468	28	bonding	bonding	NOUN
ddj-47	468	29	for	for	ADP
ddj-47	468	30	k	k	PROPN
ddj-47	468	31	=	=	SYM
ddj-47	468	32	3	3	NUM
ddj-47	468	33	,	,	PUNCT
ddj-47	468	34	4	4	NUM
ddj-47	468	35	,	,	PUNCT
ddj-47	468	36	5	5	NUM
ddj-47	468	37	,	,	PUNCT
ddj-47	468	38	6	6	NUM
ddj-47	468	39	for	for	ADP
ddj-47	468	40	y	y	NOUN
ddj-47	468	41	=	=	SYM
ddj-47	468	42	zc	zc	PROPN
ddj-47	468	43	and	and	CCONJ
ddj-47	468	44	y	y	NOUN
ddj-47	468	45	=	=	SYM
ddj-47	468	46	z	z	NOUN
ddj-47	468	47	option	option	NOUN
ddj-47	468	48	in	in	ADP
ddj-47	468	49	the	the	DET
ddj-47	468	50	case	case	NOUN
ddj-47	468	51	that	that	PRON
ddj-47	468	52	flux	flux	NOUN
ddj-47	468	53	tube	tube	NOUN
ddj-47	468	54	can	can	AUX
ddj-47	468	55	connect	connect	VERB
ddj-47	468	56	y	y	PROPN
ddj-47	468	57	(	(	PUNCT
ddj-47	468	58	n	n	CCONJ
ddj-47	468	59	)	)	PUNCT
ddj-47	468	60	to	to	ADP
ddj-47	468	61	z(n+	z(n+	PROPN
ddj-47	468	62	k	k	X
ddj-47	468	63	)	)	PUNCT
ddj-47	468	64	or	or	CCONJ
ddj-47	468	65	z(n	z(n	NOUN
ddj-47	468	66	)	)	PUNCT
ddj-47	468	67	to	to	ADP
ddj-47	468	68	y	y	PROPN
ddj-47	468	69	(	(	PUNCT
ddj-47	468	70	n+	n+	NOUN
ddj-47	468	71	k	k	NOUN
ddj-47	468	72	)	)	PUNCT
ddj-47	468	73	.	.	PUNCT
ddj-47	469	1	from	from	ADP
ddj-47	469	2	table	table	NOUN
ddj-47	469	3	3	3	NUM
ddj-47	469	4	one	one	NUM
ddj-47	469	5	finds	find	VERB
ddj-47	469	6	that	that	SCONJ
ddj-47	469	7	the	the	DET
ddj-47	469	8	test	test	NOUN
ddj-47	469	9	for	for	ADP
ddj-47	469	10	values	value	NOUN
ddj-47	469	11	of	of	ADP
ddj-47	469	12	k	k	NOUN
ddj-47	469	13	different	different	ADJ
ddj-47	469	14	from	from	ADP
ddj-47	469	15	k	k	PROPN
ddj-47	469	16	=	=	PUNCT
ddj-47	469	17	4	4	NUM
ddj-47	469	18	for	for	ADP
ddj-47	469	19	helix	helix	NOUN
ddj-47	469	20	gave	give	VERB
ddj-47	469	21	also	also	ADV
ddj-47	469	22	surprisingly	surprisingly	ADV
ddj-47	469	23	large	large	ADJ
ddj-47	469	24	values	value	NOUN
ddj-47	469	25	of	of	ADP
ddj-47	469	26	l(k	l(k	PROPN
ddj-47	469	27	)	)	PUNCT
ddj-47	469	28	for	for	ADP
ddj-47	469	29	y	y	NOUN
ddj-47	469	30	=	=	SYM
ddj-47	469	31	z	z	NOUN
ddj-47	469	32	option	option	NOUN
ddj-47	469	33	.	.	PUNCT
ddj-47	470	1	the	the	DET
ddj-47	470	2	average	average	ADJ
ddj-47	470	3	length	length	NOUN
ddj-47	470	4	of	of	ADP
ddj-47	470	5	alpha	alpha	ADJ
ddj-47	470	6	helix	helix	NOUN
ddj-47	470	7	is	be	AUX
ddj-47	470	8	10	10	NUM
ddj-47	470	9	amino	amino	NOUN
ddj-47	470	10	-	-	PUNCT
ddj-47	470	11	acids	acid	NOUN
ddj-47	470	12	so	so	SCONJ
ddj-47	470	13	that	that	SCONJ
ddj-47	470	14	both	both	DET
ddj-47	470	15	options	option	NOUN
ddj-47	470	16	could	could	AUX
ddj-47	470	17	work	work	VERB
ddj-47	470	18	.	.	PUNCT
ddj-47	471	1	y	y	NOUN
ddj-47	471	2	=	=	NOUN
ddj-47	471	3	zc	zc	NOUN
ddj-47	471	4	option	option	NOUN
ddj-47	471	5	gives	give	VERB
ddj-47	471	6	results	result	NOUN
ddj-47	471	7	rather	rather	ADV
ddj-47	471	8	near	near	ADV
ddj-47	471	9	to	to	ADP
ddj-47	471	10	this	this	DET
ddj-47	471	11	value	value	NOUN
ddj-47	471	12	.	.	PUNCT
ddj-47	472	1	one	one	PRON
ddj-47	472	2	can	can	AUX
ddj-47	472	3	apply	apply	VERB
ddj-47	472	4	test	test	NOUN
ddj-47	472	5	also	also	ADV
ddj-47	472	6	to	to	ADP
ddj-47	472	7	individual	individual	ADJ
ddj-47	472	8	alpha	alpha	NOUN
ddj-47	472	9	helices	helix	NOUN
ddj-47	472	10	.	.	PUNCT
ddj-47	473	1	for	for	ADP
ddj-47	473	2	asparagin	asparagin	NOUN
ddj-47	473	3	synthethase	synthethase	NOUN
ddj-47	473	4	alpha	alpha	PROPN
ddj-47	473	5	helices	helix	NOUN
ddj-47	473	6	correspond	correspond	VERB
ddj-47	473	7	to	to	ADP
ddj-47	473	8	the	the	DET
ddj-47	473	9	intervals	interval	NOUN
ddj-47	473	10	[	[	X
ddj-47	473	11	7,28	7,28	X
ddj-47	473	12	]	]	X
ddj-47	473	13	,	,	PUNCT
ddj-47	474	1	[	[	X
ddj-47	474	2	76,84	76,84	X
ddj-47	474	3	]	]	X
ddj-47	474	4	,	,	PUNCT
ddj-47	474	5	[	[	X
ddj-47	474	6	130,155	130,155	NUM
ddj-47	474	7	]	]	PUNCT
ddj-47	474	8	,	,	PUNCT
ddj-47	475	1	[	[	X
ddj-47	475	2	170,177	170,177	NUM
ddj-47	475	3	]	]	PUNCT
ddj-47	475	4	,	,	PUNCT
ddj-47	475	5	[	[	X
ddj-47	475	6	76,84	76,84	X
ddj-47	475	7	]	]	X
ddj-47	475	8	,	,	PUNCT
ddj-47	476	1	[	[	X
ddj-47	476	2	170,177	170,177	NUM
ddj-47	476	3	]	]	PUNCT
ddj-47	476	4	,	,	PUNCT
ddj-47	477	1	[	[	X
ddj-47	477	2	182,194	182,194	NUM
ddj-47	477	3	]	]	PUNCT
ddj-47	477	4	,	,	PUNCT
ddj-47	478	1	[	[	X
ddj-47	478	2	256,268	256,268	NUM
ddj-47	478	3	]	]	PUNCT
ddj-47	478	4	,	,	PUNCT
ddj-47	479	1	[	[	X
ddj-47	479	2	277,284	277,284	NUM
ddj-47	479	3	]	]	PUNCT
ddj-47	479	4	,	,	PUNCT
ddj-47	480	1	[	[	X
ddj-47	480	2	297,305	297,305	NUM
ddj-47	480	3	]	]	PUNCT
ddj-47	480	4	,	,	PUNCT
ddj-47	480	5	[	[	X
ddj-47	480	6	309,314	309,314	NUM
ddj-47	480	7	]	]	PUNCT
ddj-47	480	8	,	,	PUNCT
ddj-47	480	9	and	and	CCONJ
ddj-47	480	10	[	[	X
ddj-47	480	11	320,326	320,326	NUM
ddj-47	480	12	]	]	PUNCT
ddj-47	480	13	in	in	ADP
ddj-47	480	14	the	the	DET
ddj-47	480	15	standard	standard	ADJ
ddj-47	480	16	numbering	numbering	NOUN
ddj-47	480	17	of	of	ADP
ddj-47	480	18	amino	amino	NOUN
ddj-47	480	19	-	-	PUNCT
ddj-47	480	20	acids	acid	NOUN
ddj-47	480	21	.	.	PUNCT
ddj-47	481	1	the	the	DET
ddj-47	481	2	test	test	NOUN
ddj-47	481	3	was	be	AUX
ddj-47	481	4	done	do	VERB
ddj-47	481	5	for	for	ADP
ddj-47	481	6	k	k	PROPN
ddj-47	481	7	=	=	SYM
ddj-47	481	8	3	3	NUM
ddj-47	481	9	,	,	PUNCT
ddj-47	481	10	4	4	NUM
ddj-47	481	11	,	,	PUNCT
ddj-47	481	12	5	5	NUM
ddj-47	481	13	,	,	PUNCT
ddj-47	481	14	6	6	NUM
ddj-47	481	15	assuming	assume	VERB
ddj-47	481	16	that	that	SCONJ
ddj-47	481	17	the	the	DET
ddj-47	481	18	upper	upper	ADJ
ddj-47	481	19	end	end	NOUN
ddj-47	481	20	of	of	ADP
ddj-47	481	21	tested	test	VERB
ddj-47	481	22	interval	interval	NOUN
ddj-47	481	23	is	be	AUX
ddj-47	481	24	6	6	NUM
ddj-47	481	25	units	unit	NOUN
ddj-47	481	26	higher	high	ADJ
ddj-47	481	27	.	.	PUNCT
ddj-47	482	1	n	n	NOUN
ddj-47	482	2	=	=	SYM
ddj-47	482	3	(	(	PUNCT
ddj-47	482	4	0	0	NUM
ddj-47	482	5	,	,	PUNCT
ddj-47	482	6	0	0	NUM
ddj-47	482	7	,	,	PUNCT
ddj-47	482	8	0	0	NUM
ddj-47	482	9	,	,	PUNCT
ddj-47	482	10	0	0	NUM
ddj-47	482	11	)	)	PUNCT
ddj-47	482	12	results	result	NOUN
ddj-47	482	13	for	for	ADP
ddj-47	482	14	both	both	DET
ddj-47	482	15	options	option	NOUN
ddj-47	482	16	for	for	ADP
ddj-47	482	17	all	all	DET
ddj-47	482	18	intervals	interval	NOUN
ddj-47	482	19	except	except	SCONJ
ddj-47	482	20	for	for	ADP
ddj-47	482	21	the	the	DET
ddj-47	482	22	interval	interval	NOUN
ddj-47	482	23	[	[	X
ddj-47	482	24	7	7	NUM
ddj-47	482	25	,	,	PUNCT
ddj-47	482	26	28	28	NUM
ddj-47	482	27	]	]	PUNCT
ddj-47	482	28	for	for	ADP
ddj-47	482	29	y	y	PROPN
ddj-47	482	30	=	=	SYM
ddj-47	482	31	zc	zc	PROPN
ddj-47	482	32	for	for	ADP
ddj-47	482	33	which	which	PRON
ddj-47	482	34	one	one	NOUN
ddj-47	482	35	obtains	obtain	VERB
ddj-47	482	36	n	n	NOUN
ddj-47	482	37	=	=	PUNCT
ddj-47	482	38	(	(	PUNCT
ddj-47	482	39	4	4	NUM
ddj-47	482	40	,	,	PUNCT
ddj-47	482	41	2	2	NUM
ddj-47	482	42	,	,	PUNCT
ddj-47	482	43	3	3	NUM
ddj-47	482	44	,	,	PUNCT
ddj-47	482	45	3	3	NUM
ddj-47	482	46	)	)	PUNCT
ddj-47	482	47	.	.	PUNCT
ddj-47	483	1	hence	hence	ADV
ddj-47	483	2	y	y	PROPN
ddj-47	483	3	=	=	SYM
ddj-47	483	4	z	z	NOUN
ddj-47	483	5	option	option	NOUN
ddj-47	483	6	is	be	AUX
ddj-47	483	7	favored	favor	VERB
ddj-47	483	8	.	.	PUNCT
ddj-47	484	1	in	in	ADP
ddj-47	484	2	the	the	DET
ddj-47	484	3	case	case	NOUN
ddj-47	484	4	of	of	ADP
ddj-47	484	5	remaining	remain	VERB
ddj-47	484	6	enzymes	enzyme	NOUN
ddj-47	484	7	only	only	ADV
ddj-47	484	8	long	long	ADV
ddj-47	484	9	enough	enough	ADV
ddj-47	484	10	alpha	alpha	NOUN
ddj-47	484	11	helices	helix	NOUN
ddj-47	484	12	were	be	AUX
ddj-47	484	13	tested	test	VERB
ddj-47	484	14	and	and	CCONJ
ddj-47	484	15	the	the	DET
ddj-47	484	16	following	follow	VERB
ddj-47	484	17	table	table	NOUN
ddj-47	484	18	gives	give	VERB
ddj-47	484	19	the	the	DET
ddj-47	484	20	results	result	NOUN
ddj-47	484	21	issn	issn	VERB
ddj-47	484	22	:	:	PUNCT
ddj-47	484	23	2159	2159	NUM
ddj-47	484	24	-	-	SYM
ddj-47	484	25	0465	0465	NUM
ddj-47	484	26	dna	dna	PROPN
ddj-47	484	27	decipher	decipher	PROPN
ddj-47	484	28	journal	journal	PROPN
ddj-47	484	29	june	june	PROPN
ddj-47	484	30	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	484	31	published	publish	VERB
ddj-47	484	32	by	by	ADP
ddj-47	484	33	quantumdream	quantumdream	PROPN
ddj-47	484	34	,	,	PUNCT
ddj-47	484	35	inc	inc	PROPN
ddj-47	484	36	.	.	PROPN
ddj-47	484	37	dna	dna	PROPN
ddj-47	484	38	decipher	decipher	PROPN
ddj-47	484	39	journal	journal	NOUN
ddj-47	485	1	|	|	ADV
ddj-47	485	2	may	may	AUX
ddj-47	485	3	2013	2013	NUM
ddj-47	485	4	|	|	ADV
ddj-47	485	5	volume	volume	NOUN
ddj-47	485	6	3	3	NUM
ddj-47	485	7	|	|	NOUN
ddj-47	485	8	issue	issue	VERB
ddj-47	485	9	1	1	NUM
ddj-47	485	10	|	|	ADV
ddj-47	485	11	pp	pp	ADJ
ddj-47	485	12	.	.	PUNCT
ddj-47	486	1	58	58	NUM
ddj-47	486	2	-	-	SYM
ddj-47	486	3	88	88	NUM
ddj-47	486	4	73	73	NUM
ddj-47	486	5	pitkänen	pitkänen	NOUN
ddj-47	486	6	,	,	PUNCT
ddj-47	486	7	m.	m.	NOUN
ddj-47	486	8	,	,	PUNCT
ddj-47	486	9	a	a	DET
ddj-47	486	10	model	model	NOUN
ddj-47	486	11	for	for	ADP
ddj-47	486	12	protein	protein	NOUN
ddj-47	486	13	folding	folding	NOUN
ddj-47	486	14	and	and	CCONJ
ddj-47	486	15	biocatalysis	biocatalysis	NOUN
ddj-47	486	16	alpha	alpha	NOUN
ddj-47	486	17	helix	helix	NOUN
ddj-47	486	18	n(y	n(y	PROPN
ddj-47	486	19	=	=	PUNCT
ddj-47	486	20	z	z	X
ddj-47	486	21	)	)	PUNCT
ddj-47	486	22	n(y	n(y	PROPN
ddj-47	486	23	=	=	SYM
ddj-47	486	24	zc	zc	X
ddj-47	486	25	)	)	PUNCT
ddj-47	486	26	xylose	xylose	PROPN
ddj-47	486	27	isomerase	isomerase	NOUN
ddj-47	486	28	[	[	X
ddj-47	486	29	74,93	74,93	NUM
ddj-47	486	30	]	]	X
ddj-47	486	31	(	(	PUNCT
ddj-47	486	32	2,1,0,1)(met	2,1,0,1)(met	NUM
ddj-47	486	33	-	-	PUNCT
ddj-47	486	34	lys	lys	NOUN
ddj-47	486	35	)	)	PUNCT
ddj-47	486	36	(	(	PUNCT
ddj-47	486	37	1,5,1,0	1,5,1,0	NUM
ddj-47	486	38	)	)	PUNCT
ddj-47	487	1	[	[	X
ddj-47	487	2	111,129	111,129	NUM
ddj-47	487	3	]	]	X
ddj-47	487	4	(	(	PUNCT
ddj-47	487	5	0,1,0,1)(asn	0,1,0,1)(asn	NOUN
ddj-47	487	6	-	-	PUNCT
ddj-47	487	7	asp	asp	NOUN
ddj-47	487	8	)	)	PUNCT
ddj-47	487	9	(	(	PUNCT
ddj-47	487	10	2,1,0,0	2,1,0,0	NUM
ddj-47	487	11	)	)	PUNCT
ddj-47	488	1	[	[	X
ddj-47	488	2	159,179	159,179	NUM
ddj-47	488	3	]	]	SYM
ddj-47	488	4	(	(	PUNCT
ddj-47	488	5	0,1,0,0)(asp	0,1,0,0)(asp	NUM
ddj-47	488	6	-	-	PUNCT
ddj-47	488	7	tyr	tyr	NOUN
ddj-47	488	8	)	)	PUNCT
ddj-47	488	9	(	(	PUNCT
ddj-47	488	10	5,4,1,3	5,4,1,3	NUM
ddj-47	488	11	)	)	PUNCT
ddj-47	489	1	[	[	X
ddj-47	489	2	201,223	201,223	NUM
ddj-47	489	3	]	]	X
ddj-47	489	4	(	(	PUNCT
ddj-47	489	5	1,1,1,2)(met	1,1,1,2)(met	NUM
ddj-47	489	6	-	-	PUNCT
ddj-47	489	7	tyr	tyr	NOUN
ddj-47	489	8	)	)	PUNCT
ddj-47	489	9	(	(	PUNCT
ddj-47	489	10	4,3,4,3	4,3,4,3	NUM
ddj-47	489	11	)	)	PUNCT
ddj-47	490	1	[	[	X
ddj-47	490	2	245,255	245,255	NUM
ddj-47	490	3	]	]	X
ddj-47	490	4	(	(	PUNCT
ddj-47	490	5	2,0,0,0	2,0,0,0	NUM
ddj-47	490	6	)	)	PUNCT
ddj-47	490	7	(	(	PUNCT
ddj-47	490	8	0,1,1,0	0,1,1,0	NUM
ddj-47	490	9	)	)	PUNCT
ddj-47	491	1	[	[	X
ddj-47	491	2	278,287	278,287	NUM
ddj-47	491	3	]	]	X
ddj-47	491	4	(	(	PUNCT
ddj-47	491	5	0,1,0,0)(his	0,1,0,0)(his	NOUN
ddj-47	491	6	-	-	PUNCT
ddj-47	491	7	tyr	tyr	NOUN
ddj-47	491	8	)	)	PUNCT
ddj-47	491	9	(	(	PUNCT
ddj-47	491	10	0,0,0,1	0,0,0,1	NOUN
ddj-47	491	11	)	)	PUNCT
ddj-47	492	1	[	[	X
ddj-47	492	2	314,327	314,327	NUM
ddj-47	492	3	]	]	X
ddj-47	492	4	(	(	PUNCT
ddj-47	492	5	0,0,2,1	0,0,2,1	NUM
ddj-47	492	6	)	)	PUNCT
ddj-47	492	7	(	(	PUNCT
ddj-47	492	8	2,0,1,1	2,0,1,1	NUM
ddj-47	492	9	)	)	PUNCT
ddj-47	493	1	[	[	X
ddj-47	493	2	349,374	349,374	NUM
ddj-47	493	3	]	]	PUNCT
ddj-47	493	4	(	(	PUNCT
ddj-47	493	5	0,0,4,0	0,0,4,0	NUM
ddj-47	493	6	)	)	PUNCT
ddj-47	493	7	(	(	PUNCT
ddj-47	493	8	3,4,1,2	3,4,1,2	NUM
ddj-47	493	9	)	)	PUNCT
ddj-47	494	1	[	[	X
ddj-47	494	2	376,386	376,386	NUM
ddj-47	494	3	]	]	PUNCT
ddj-47	494	4	(	(	PUNCT
ddj-47	494	5	1,0,0,0	1,0,0,0	NUM
ddj-47	494	6	)	)	PUNCT
ddj-47	494	7	(	(	PUNCT
ddj-47	494	8	2,1,1,1	2,1,1,1	NUM
ddj-47	494	9	)	)	PUNCT
ddj-47	495	1	[	[	X
ddj-47	495	2	393,399	393,399	NUM
ddj-47	495	3	]	]	PUNCT
ddj-47	495	4	(	(	PUNCT
ddj-47	495	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	495	6	)	)	PUNCT
ddj-47	495	7	(	(	PUNCT
ddj-47	495	8	0,0,0,1	0,0,0,1	NOUN
ddj-47	495	9	)	)	PUNCT
ddj-47	496	1	[	[	X
ddj-47	496	2	404,414	404,414	NUM
ddj-47	496	3	]	]	PUNCT
ddj-47	496	4	(	(	PUNCT
ddj-47	496	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	496	6	)	)	PUNCT
ddj-47	496	7	(	(	PUNCT
ddj-47	496	8	1,1,1,1	1,1,1,1	NUM
ddj-47	496	9	)	)	PUNCT
ddj-47	497	1	[	[	X
ddj-47	497	2	424,435	424,435	NUM
ddj-47	497	3	]	]	PUNCT
ddj-47	497	4	(	(	PUNCT
ddj-47	497	5	0,0,1,0	0,0,1,0	NUM
ddj-47	497	6	)	)	PUNCT
ddj-47	497	7	(	(	PUNCT
ddj-47	497	8	2,1,2,0	2,1,2,0	X
ddj-47	497	9	)	)	PUNCT
ddj-47	497	10	hydrolase	hydrolase	NOUN
ddj-47	498	1	[	[	X
ddj-47	498	2	39,50	39,50	NUM
ddj-47	498	3	]	]	X
ddj-47	498	4	(	(	PUNCT
ddj-47	498	5	0,0,0,1	0,0,0,1	NOUN
ddj-47	498	6	)	)	PUNCT
ddj-47	498	7	(	(	PUNCT
ddj-47	498	8	2,1,2,1	2,1,2,1	NUM
ddj-47	498	9	)	)	PUNCT
ddj-47	499	1	[	[	X
ddj-47	499	2	60,79	60,79	NOUN
ddj-47	499	3	]	]	X
ddj-47	499	4	(	(	PUNCT
ddj-47	499	5	0,1,0,0)(asn	0,1,0,0)(asn	NOUN
ddj-47	499	6	-	-	PUNCT
ddj-47	499	7	asp	asp	NOUN
ddj-47	499	8	)	)	PUNCT
ddj-47	499	9	(	(	PUNCT
ddj-47	499	10	2,2,3,1	2,2,3,1	NUM
ddj-47	499	11	)	)	PUNCT
ddj-47	500	1	[	[	X
ddj-47	500	2	93,113	93,113	NUM
ddj-47	500	3	]	]	X
ddj-47	500	4	(	(	PUNCT
ddj-47	500	5	1,1,0,1)(val	1,1,0,1)(val	NOUN
ddj-47	500	6	-	-	PUNCT
ddj-47	500	7	gly	gly	NOUN
ddj-47	500	8	)	)	PUNCT
ddj-47	500	9	(	(	PUNCT
ddj-47	500	10	3,0,2,1	3,0,2,1	NUM
ddj-47	500	11	)	)	PUNCT
ddj-47	501	1	[	[	X
ddj-47	501	2	115,121	115,121	NUM
ddj-47	501	3	]	]	X
ddj-47	501	4	(	(	PUNCT
ddj-47	501	5	1,0,0,0	1,0,0,0	NUM
ddj-47	501	6	)	)	PUNCT
ddj-47	501	7	(	(	PUNCT
ddj-47	501	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	501	9	)	)	PUNCT
ddj-47	502	1	[	[	X
ddj-47	502	2	126,134	126,134	NUM
ddj-47	502	3	]	]	PUNCT
ddj-47	502	4	(	(	PUNCT
ddj-47	502	5	0,0,1,0	0,0,1,0	NUM
ddj-47	502	6	)	)	PUNCT
ddj-47	502	7	(	(	PUNCT
ddj-47	502	8	1,0,0,0	1,0,0,0	NUM
ddj-47	502	9	)	)	PUNCT
ddj-47	503	1	[	[	X
ddj-47	503	2	143,155	143,155	NUM
ddj-47	503	3	]	]	PUNCT
ddj-47	503	4	(	(	PUNCT
ddj-47	503	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	503	6	)	)	PUNCT
ddj-47	503	7	(	(	PUNCT
ddj-47	503	8	0,0,0,1	0,0,0,1	NOUN
ddj-47	503	9	)	)	PUNCT
ddj-47	503	10	glutathione	glutathione	NOUN
ddj-47	503	11	s	s	NOUN
ddj-47	503	12	-	-	NOUN
ddj-47	503	13	transferase	transferase	NOUN
ddj-47	503	14	[	[	X
ddj-47	503	15	12,24	12,24	X
ddj-47	503	16	]	]	PUNCT
ddj-47	503	17	(	(	PUNCT
ddj-47	503	18	0,0,1,0	0,0,1,0	NUM
ddj-47	503	19	)	)	PUNCT
ddj-47	503	20	(	(	PUNCT
ddj-47	503	21	0,0,0,0	0,0,0,0	NOUN
ddj-47	503	22	)	)	PUNCT
ddj-47	504	1	[	[	X
ddj-47	504	2	65,76	65,76	NUM
ddj-47	504	3	]	]	X
ddj-47	504	4	(	(	PUNCT
ddj-47	504	5	0,0,1,0	0,0,1,0	NUM
ddj-47	504	6	)	)	PUNCT
ddj-47	504	7	(	(	PUNCT
ddj-47	504	8	0,1,0,0	0,1,0,0	NUM
ddj-47	504	9	)	)	PUNCT
ddj-47	505	1	[	[	X
ddj-47	505	2	83,108	83,108	NUM
ddj-47	505	3	]	]	PUNCT
ddj-47	505	4	(	(	PUNCT
ddj-47	505	5	3,2,3,1)(met	3,2,3,1)(met	NUM
ddj-47	505	6	-	-	PUNCT
ddj-47	505	7	glu	glu	NOUN
ddj-47	505	8	-	-	PUNCT
ddj-47	505	9	asp	asp	NOUN
ddj-47	505	10	)	)	PUNCT
ddj-47	505	11	(	(	PUNCT
ddj-47	505	12	0,0,1,0	0,0,1,0	NUM
ddj-47	505	13	)	)	PUNCT
ddj-47	506	1	[	[	X
ddj-47	506	2	111,134	111,134	NUM
ddj-47	506	3	]	]	PUNCT
ddj-47	506	4	(	(	PUNCT
ddj-47	506	5	0,0,1,2	0,0,1,2	NUM
ddj-47	506	6	)	)	PUNCT
ddj-47	506	7	(	(	PUNCT
ddj-47	506	8	3,1,4,2	3,1,4,2	NUM
ddj-47	506	9	)	)	PUNCT
ddj-47	507	1	[	[	X
ddj-47	507	2	150,166	150,166	NUM
ddj-47	507	3	]	]	PUNCT
ddj-47	507	4	(	(	PUNCT
ddj-47	507	5	1,1,2,0)(asp	1,1,2,0)(asp	NUM
ddj-47	507	6	-	-	PUNCT
ddj-47	507	7	leu	leu	NOUN
ddj-47	507	8	)	)	PUNCT
ddj-47	507	9	(	(	PUNCT
ddj-47	507	10	1,1,1,0	1,1,1,0	NUM
ddj-47	507	11	)	)	PUNCT
ddj-47	508	1	[	[	X
ddj-47	508	2	174,184	174,184	NUM
ddj-47	508	3	]	]	PUNCT
ddj-47	508	4	(	(	PUNCT
ddj-47	508	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	508	6	)	)	PUNCT
ddj-47	508	7	(	(	PUNCT
ddj-47	508	8	0,0,0,1	0,0,0,1	NOUN
ddj-47	508	9	)	)	PUNCT
ddj-47	509	1	[	[	X
ddj-47	509	2	187,194	187,194	NUM
ddj-47	509	3	]	]	PUNCT
ddj-47	509	4	(	(	PUNCT
ddj-47	509	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	509	6	)	)	PUNCT
ddj-47	509	7	(	(	PUNCT
ddj-47	509	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	509	9	)	)	PUNCT
ddj-47	509	10	bamhi	bamhi	VERB
ddj-47	510	1	[	[	X
ddj-47	510	2	10,18	10,18	X
ddj-47	510	3	]	]	X
ddj-47	510	4	(	(	PUNCT
ddj-47	510	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	510	6	)	)	PUNCT
ddj-47	510	7	(	(	PUNCT
ddj-47	510	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	510	9	)	)	PUNCT
ddj-47	511	1	[	[	X
ddj-47	511	2	20,34	20,34	NOUN
ddj-47	511	3	]	]	X
ddj-47	511	4	(	(	PUNCT
ddj-47	511	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	511	6	)	)	PUNCT
ddj-47	511	7	(	(	PUNCT
ddj-47	511	8	0,1,1,1	0,1,1,1	NUM
ddj-47	511	9	)	)	PUNCT
ddj-47	512	1	[	[	X
ddj-47	512	2	58,72	58,72	NUM
ddj-47	512	3	]	]	X
ddj-47	512	4	(	(	PUNCT
ddj-47	512	5	1,0,1,1	1,0,1,1	NUM
ddj-47	512	6	)	)	PUNCT
ddj-47	512	7	(	(	PUNCT
ddj-47	512	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	512	9	)	)	PUNCT
ddj-47	513	1	[	[	X
ddj-47	513	2	79,84	79,84	X
ddj-47	513	3	]	]	PUNCT
ddj-47	513	4	(	(	PUNCT
ddj-47	513	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	513	6	)	)	PUNCT
ddj-47	513	7	(	(	PUNCT
ddj-47	513	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	513	9	)	)	PUNCT
ddj-47	514	1	[	[	X
ddj-47	514	2	117,132	117,132	NUM
ddj-47	514	3	]	]	PUNCT
ddj-47	514	4	(	(	PUNCT
ddj-47	514	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	514	6	)	)	PUNCT
ddj-47	514	7	(	(	PUNCT
ddj-47	514	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	514	9	)	)	PUNCT
ddj-47	515	1	[	[	X
ddj-47	515	2	146,150	146,150	NUM
ddj-47	515	3	]	]	X
ddj-47	515	4	(	(	PUNCT
ddj-47	515	5	1,1,0,0	1,1,0,0	NUM
ddj-47	515	6	)	)	PUNCT
ddj-47	515	7	(	(	PUNCT
ddj-47	515	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	515	9	)	)	PUNCT
ddj-47	516	1	[	[	X
ddj-47	516	2	159,169	159,169	NUM
ddj-47	516	3	]	]	SYM
ddj-47	516	4	(	(	PUNCT
ddj-47	516	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	516	6	)	)	PUNCT
ddj-47	516	7	(	(	PUNCT
ddj-47	516	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	516	9	)	)	PUNCT
ddj-47	517	1	[	[	X
ddj-47	517	2	200,205	200,205	NUM
ddj-47	517	3	]	]	X
ddj-47	517	4	(	(	PUNCT
ddj-47	517	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	517	6	)	)	PUNCT
ddj-47	517	7	(	(	PUNCT
ddj-47	517	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	517	9	)	)	PUNCT
ddj-47	517	10	table	table	NOUN
ddj-47	517	11	4	4	NUM
ddj-47	517	12	.	.	PUNCT
ddj-47	518	1	the	the	DET
ddj-47	518	2	test	test	NOUN
ddj-47	518	3	for	for	ADP
ddj-47	518	4	alpha	alpha	ADJ
ddj-47	518	5	helices	helix	NOUN
ddj-47	518	6	of	of	ADP
ddj-47	518	7	four	four	NUM
ddj-47	518	8	enzymes	enzyme	NOUN
ddj-47	518	9	.	.	PUNCT
ddj-47	519	1	the	the	DET
ddj-47	519	2	first	first	ADJ
ddj-47	519	3	column	column	NOUN
ddj-47	519	4	gives	give	VERB
ddj-47	519	5	the	the	DET
ddj-47	519	6	range	range	NOUN
ddj-47	519	7	of	of	ADP
ddj-47	519	8	amino	amino	NOUN
ddj-47	519	9	-	-	PUNCT
ddj-47	519	10	acids	acid	NOUN
ddj-47	519	11	defining	define	VERB
ddj-47	519	12	the	the	DET
ddj-47	519	13	alpha	alpha	ADJ
ddj-47	519	14	helix	helix	NOUN
ddj-47	519	15	in	in	ADP
ddj-47	519	16	question	question	NOUN
ddj-47	519	17	.	.	PUNCT
ddj-47	520	1	the	the	DET
ddj-47	520	2	vectors	vector	NOUN
ddj-47	520	3	in	in	ADP
ddj-47	520	4	second	second	ADJ
ddj-47	520	5	and	and	CCONJ
ddj-47	520	6	third	third	ADJ
ddj-47	520	7	column	column	NOUN
ddj-47	520	8	give	give	VERB
ddj-47	520	9	the	the	DET
ddj-47	520	10	numbers	number	NOUN
ddj-47	520	11	of	of	ADP
ddj-47	520	12	failures	failure	NOUN
ddj-47	520	13	for	for	ADP
ddj-47	520	14	k	k	PROPN
ddj-47	520	15	=	=	SYM
ddj-47	520	16	3	3	NUM
ddj-47	520	17	,	,	PUNCT
ddj-47	520	18	4	4	NUM
ddj-47	520	19	,	,	PUNCT
ddj-47	520	20	5	5	NUM
ddj-47	520	21	,	,	PUNCT
ddj-47	520	22	6	6	NUM
ddj-47	520	23	for	for	ADP
ddj-47	520	24	(	(	PUNCT
ddj-47	520	25	n	n	CCONJ
ddj-47	520	26	,	,	PUNCT
ddj-47	520	27	n+	n+	X
ddj-47	520	28	k	k	NOUN
ddj-47	520	29	)	)	PUNCT
ddj-47	520	30	helix	helix	NOUN
ddj-47	520	31	(	(	PUNCT
ddj-47	520	32	k	k	NOUN
ddj-47	520	33	=	=	SYM
ddj-47	520	34	4	4	NUM
ddj-47	520	35	is	be	AUX
ddj-47	520	36	the	the	DET
ddj-47	520	37	most	most	ADV
ddj-47	520	38	interesting	interesting	ADJ
ddj-47	520	39	value	value	NOUN
ddj-47	520	40	)	)	PUNCT
ddj-47	520	41	.	.	PUNCT
ddj-47	521	1	the	the	DET
ddj-47	521	2	amino	amino	NOUN
ddj-47	521	3	-	-	PUNCT
ddj-47	521	4	acid	acid	NOUN
ddj-47	521	5	-	-	PUNCT
ddj-47	521	6	pairs	pair	NOUN
ddj-47	521	7	for	for	ADP
ddj-47	521	8	which	which	PRON
ddj-47	521	9	the	the	DET
ddj-47	521	10	hydrogen	hydrogen	NOUN
ddj-47	521	11	bond	bond	NOUN
ddj-47	521	12	does	do	AUX
ddj-47	521	13	not	not	PART
ddj-47	521	14	exist	exist	VERB
ddj-47	521	15	for	for	ADP
ddj-47	521	16	y	y	NOUN
ddj-47	521	17	=	=	SYM
ddj-47	521	18	z	z	NOUN
ddj-47	521	19	option	option	NOUN
ddj-47	521	20	are	be	AUX
ddj-47	521	21	given	give	VERB
ddj-47	521	22	.	.	PUNCT
ddj-47	522	1	the	the	DET
ddj-47	522	2	conclusions	conclusion	NOUN
ddj-47	522	3	are	be	AUX
ddj-47	522	4	following	follow	VERB
ddj-47	522	5	.	.	PUNCT
ddj-47	523	1	1	1	X
ddj-47	523	2	.	.	X
ddj-47	523	3	from	from	ADP
ddj-47	523	4	table	table	NOUN
ddj-47	523	5	4	4	NUM
ddj-47	523	6	it	it	PRON
ddj-47	523	7	seems	seem	VERB
ddj-47	523	8	clear	clear	ADJ
ddj-47	523	9	that	that	SCONJ
ddj-47	523	10	y	y	PRON
ddj-47	523	11	=	=	NOUN
ddj-47	523	12	zc	zc	NOUN
ddj-47	523	13	option	option	NOUN
ddj-47	523	14	does	do	AUX
ddj-47	523	15	not	not	PART
ddj-47	523	16	work	work	VERB
ddj-47	523	17	satisfactorily	satisfactorily	ADV
ddj-47	523	18	whereas	whereas	SCONJ
ddj-47	523	19	y	y	PROPN
ddj-47	523	20	=	=	SYM
ddj-47	523	21	z	z	NOUN
ddj-47	523	22	option	option	NOUN
ddj-47	523	23	has	have	VERB
ddj-47	523	24	rather	rather	ADV
ddj-47	523	25	few	few	ADJ
ddj-47	523	26	failures	failure	NOUN
ddj-47	523	27	.	.	PUNCT
ddj-47	524	1	2	2	X
ddj-47	524	2	.	.	X
ddj-47	524	3	in	in	ADP
ddj-47	524	4	the	the	DET
ddj-47	524	5	case	case	NOUN
ddj-47	524	6	of	of	ADP
ddj-47	524	7	xylose	xylose	PROPN
ddj-47	524	8	isomerase	isomerase	NOUN
ddj-47	524	9	and	and	CCONJ
ddj-47	524	10	(	(	PUNCT
ddj-47	524	11	y	y	NOUN
ddj-47	524	12	=	=	SYM
ddj-47	524	13	z	z	NOUN
ddj-47	524	14	)	)	PUNCT
ddj-47	524	15	option	option	NOUN
ddj-47	524	16	with	with	ADP
ddj-47	524	17	k	k	PROPN
ddj-47	524	18	=	=	SYM
ddj-47	524	19	4	4	NUM
ddj-47	524	20	there	there	PRON
ddj-47	524	21	are	be	VERB
ddj-47	524	22	four	four	NUM
ddj-47	524	23	helices	helix	NOUN
ddj-47	524	24	for	for	ADP
ddj-47	524	25	which	which	PRON
ddj-47	524	26	failure	failure	NOUN
ddj-47	524	27	occurs	occur	VERB
ddj-47	524	28	for	for	ADP
ddj-47	524	29	single	single	ADJ
ddj-47	524	30	aminoacid	aminoacid	NOUN
ddj-47	524	31	.	.	PUNCT
ddj-47	525	1	the	the	DET
ddj-47	525	2	prediction	prediction	NOUN
ddj-47	525	3	is	be	AUX
ddj-47	525	4	that	that	SCONJ
ddj-47	525	5	the	the	DET
ddj-47	525	6	corresponding	correspond	VERB
ddj-47	525	7	hydrogen	hydrogen	NOUN
ddj-47	525	8	bonds	bond	NOUN
ddj-47	525	9	are	be	AUX
ddj-47	525	10	actually	actually	ADV
ddj-47	525	11	absent	absent	ADJ
ddj-47	525	12	.	.	PUNCT
ddj-47	526	1	3	3	X
ddj-47	526	2	.	.	X
ddj-47	526	3	the	the	DET
ddj-47	526	4	worst	bad	ADJ
ddj-47	526	5	failure	failure	NOUN
ddj-47	526	6	occurs	occur	VERB
ddj-47	526	7	for	for	ADP
ddj-47	526	8	glutathione	glutathione	NOUN
ddj-47	526	9	s	s	NOUN
ddj-47	526	10	-	-	NOUN
ddj-47	526	11	transferase	transferase	NOUN
ddj-47	526	12	and	and	CCONJ
ddj-47	526	13	involves	involve	VERB
ddj-47	526	14	two	two	NUM
ddj-47	526	15	aminoacids	aminoacid	NOUN
ddj-47	526	16	which	which	PRON
ddj-47	526	17	are	be	AUX
ddj-47	526	18	at	at	ADP
ddj-47	526	19	positions	position	NOUN
ddj-47	526	20	n	n	PRON
ddj-47	526	21	and	and	CCONJ
ddj-47	526	22	n+	n+	NUM
ddj-47	527	1	4	4	X
ddj-47	527	2	.	.	X
ddj-47	528	1	the	the	DET
ddj-47	528	2	hydrogen	hydrogen	NOUN
ddj-47	528	3	bonds	bond	NOUN
ddj-47	528	4	are	be	AUX
ddj-47	528	5	predicted	predict	VERB
ddj-47	528	6	to	to	PART
ddj-47	528	7	not	not	PART
ddj-47	528	8	exist	exist	VERB
ddj-47	528	9	between	between	ADP
ddj-47	528	10	met	meet	VERB
ddj-47	528	11	-	-	PUNCT
ddj-47	528	12	glu	glu	NOUN
ddj-47	528	13	and	and	CCONJ
ddj-47	528	14	glu	glu	PROPN
ddj-47	528	15	-	-	PUNCT
ddj-47	528	16	asp	asp	NOUN
ddj-47	528	17	in	in	ADP
ddj-47	528	18	met	meet	VERB
ddj-47	528	19	-	-	PUNCT
ddj-47	528	20	glu	glu	NOUN
ddj-47	528	21	-	-	PUNCT
ddj-47	528	22	asp	asp	NOUN
ddj-47	528	23	.	.	PUNCT
ddj-47	529	1	beta	beta	ADJ
ddj-47	529	2	sheets	sheet	NOUN
ddj-47	529	3	consist	consist	VERB
ddj-47	529	4	of	of	ADP
ddj-47	529	5	beta	beta	ADJ
ddj-47	529	6	strands	strand	NOUN
ddj-47	529	7	which	which	PRON
ddj-47	529	8	can	can	AUX
ddj-47	529	9	be	be	AUX
ddj-47	529	10	regarded	regard	VERB
ddj-47	529	11	as	as	ADP
ddj-47	529	12	(	(	PUNCT
ddj-47	529	13	n	n	CCONJ
ddj-47	529	14	,	,	PUNCT
ddj-47	529	15	n	n	PROPN
ddj-47	529	16	+	+	NOUN
ddj-47	529	17	1	1	X
ddj-47	529	18	)	)	PUNCT
ddj-47	529	19	helices	helix	NOUN
ddj-47	529	20	so	so	SCONJ
ddj-47	529	21	that	that	SCONJ
ddj-47	529	22	stability	stability	NOUN
ddj-47	529	23	conditions	condition	NOUN
ddj-47	529	24	correspond	correspond	VERB
ddj-47	529	25	to	to	ADP
ddj-47	529	26	k	k	PROPN
ddj-47	529	27	=	=	PUNCT
ddj-47	529	28	1	1	X
ddj-47	529	29	.	.	PUNCT
ddj-47	530	1	as	as	ADP
ddj-47	530	2	the	the	DET
ddj-47	530	3	table	table	NOUN
ddj-47	530	4	below	below	ADP
ddj-47	530	5	shows	show	NOUN
ddj-47	530	6	,	,	PUNCT
ddj-47	530	7	there	there	PRON
ddj-47	530	8	are	be	VERB
ddj-47	530	9	no	no	DET
ddj-47	530	10	failures	failure	NOUN
ddj-47	530	11	for	for	ADP
ddj-47	530	12	y	y	PROPN
ddj-47	530	13	=	=	NOUN
ddj-47	530	14	z	z	NOUN
ddj-47	530	15	option	option	NOUN
ddj-47	530	16	whereas	whereas	SCONJ
ddj-47	530	17	y	y	PROPN
ddj-47	530	18	=	=	PUNCT
ddj-47	530	19	zc	zc	NOUN
ddj-47	530	20	option	option	NOUN
ddj-47	530	21	has	have	AUX
ddj-47	530	22	issn	issn	VERB
ddj-47	530	23	:	:	PUNCT
ddj-47	530	24	2159	2159	NUM
ddj-47	530	25	-	-	SYM
ddj-47	530	26	0465	0465	NUM
ddj-47	530	27	dna	dna	PROPN
ddj-47	530	28	decipher	decipher	PROPN
ddj-47	530	29	journal	journal	PROPN
ddj-47	530	30	june	june	PROPN
ddj-47	530	31	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	530	32	published	publish	VERB
ddj-47	530	33	by	by	ADP
ddj-47	530	34	quantumdream	quantumdream	PROPN
ddj-47	530	35	,	,	PUNCT
ddj-47	530	36	inc	inc	PROPN
ddj-47	530	37	.	.	PROPN
ddj-47	530	38	dna	dna	PROPN
ddj-47	530	39	decipher	decipher	PROPN
ddj-47	530	40	journal	journal	NOUN
ddj-47	531	1	|	|	ADV
ddj-47	531	2	may	may	AUX
ddj-47	531	3	2013	2013	NUM
ddj-47	531	4	|	|	ADV
ddj-47	531	5	volume	volume	NOUN
ddj-47	531	6	3	3	NUM
ddj-47	531	7	|	|	NOUN
ddj-47	531	8	issue	issue	VERB
ddj-47	531	9	1	1	NUM
ddj-47	531	10	|	|	ADV
ddj-47	531	11	pp	pp	ADJ
ddj-47	531	12	.	.	PUNCT
ddj-47	532	1	58	58	NUM
ddj-47	532	2	-	-	SYM
ddj-47	532	3	88	88	NUM
ddj-47	532	4	74	74	NUM
ddj-47	532	5	pitkänen	pitkänen	NOUN
ddj-47	532	6	,	,	PUNCT
ddj-47	532	7	m.	m.	NOUN
ddj-47	532	8	,	,	PUNCT
ddj-47	532	9	a	a	DET
ddj-47	532	10	model	model	NOUN
ddj-47	532	11	for	for	ADP
ddj-47	532	12	protein	protein	NOUN
ddj-47	532	13	folding	folding	NOUN
ddj-47	532	14	and	and	CCONJ
ddj-47	532	15	biocatalysis	biocatalysis	NOUN
ddj-47	532	16	several	several	ADJ
ddj-47	532	17	failures	failure	NOUN
ddj-47	532	18	and	and	CCONJ
ddj-47	532	19	very	very	ADV
ddj-47	532	20	bad	bad	ADJ
ddj-47	532	21	failure	failure	NOUN
ddj-47	532	22	for	for	ADP
ddj-47	532	23	glutathione	glutathione	NOUN
ddj-47	532	24	s	s	NOUN
ddj-47	532	25	-	-	NOUN
ddj-47	532	26	transferase	transferase	NOUN
ddj-47	532	27	(	(	PUNCT
ddj-47	532	28	3	3	NUM
ddj-47	532	29	failures	failure	NOUN
ddj-47	532	30	for	for	ADP
ddj-47	532	31	4	4	NUM
ddj-47	532	32	units	unit	NOUN
ddj-47	532	33	long	long	ADJ
ddj-47	532	34	strand	strand	NOUN
ddj-47	532	35	)	)	PUNCT
ddj-47	532	36	.	.	PUNCT
ddj-47	533	1	beta	beta	ADJ
ddj-47	533	2	sheet	sheet	NOUN
ddj-47	533	3	n(y	n(y	PROPN
ddj-47	533	4	=	=	PUNCT
ddj-47	533	5	z	z	X
ddj-47	533	6	)	)	PUNCT
ddj-47	534	1	n(y	n(y	PROPN
ddj-47	534	2	=	=	SYM
ddj-47	534	3	zc	zc	X
ddj-47	534	4	)	)	PUNCT
ddj-47	534	5	asparagin	asparagin	NOUN
ddj-47	534	6	synthethase	synthethase	NOUN
ddj-47	535	1	[	[	X
ddj-47	535	2	113,122	113,122	NUM
ddj-47	535	3	]	]	SYM
ddj-47	535	4	0	0	NUM
ddj-47	535	5	2	2	NUM
ddj-47	536	1	[	[	X
ddj-47	536	2	233,240	233,240	NUM
ddj-47	536	3	]	]	PUNCT
ddj-47	536	4	0	0	NUM
ddj-47	536	5	0	0	PUNCT
ddj-47	537	1	[	[	X
ddj-47	537	2	245,255	245,255	NUM
ddj-47	537	3	]	]	SYM
ddj-47	537	4	0	0	NUM
ddj-47	537	5	0	0	PUNCT
ddj-47	538	1	[	[	X
ddj-47	538	2	290,297	290,297	NUM
ddj-47	538	3	]	]	SYM
ddj-47	538	4	0	0	NUM
ddj-47	538	5	3	3	NUM
ddj-47	538	6	xylose	xylose	NOUN
ddj-47	538	7	isomerase	isomerase	NOUN
ddj-47	538	8	[	[	X
ddj-47	538	9	43,47	43,47	X
ddj-47	538	10	]	]	X
ddj-47	538	11	0	0	NUM
ddj-47	538	12	0	0	NUM
ddj-47	539	1	[	[	X
ddj-47	539	2	96,100	96,100	NUM
ddj-47	539	3	]	]	SYM
ddj-47	539	4	0	0	NUM
ddj-47	539	5	2	2	NUM
ddj-47	540	1	[	[	X
ddj-47	540	2	134,140	134,140	NUM
ddj-47	540	3	]	]	SYM
ddj-47	540	4	0	0	NUM
ddj-47	540	5	1	1	NUM
ddj-47	541	1	[	[	X
ddj-47	541	2	262,267	262,267	NUM
ddj-47	541	3	]	]	PUNCT
ddj-47	541	4	0	0	NUM
ddj-47	541	5	0	0	NUM
ddj-47	542	1	[	[	X
ddj-47	542	2	291,295	291,295	NUM
ddj-47	542	3	]	]	SYM
ddj-47	542	4	0	0	NUM
ddj-47	542	5	0	0	NUM
ddj-47	542	6	hydrolase	hydrolase	NOUN
ddj-47	543	1	[	[	X
ddj-47	543	2	14,19	14,19	NUM
ddj-47	543	3	]	]	X
ddj-47	543	4	0	0	NUM
ddj-47	543	5	0	0	NUM
ddj-47	544	1	[	[	X
ddj-47	544	2	25,28	25,28	X
ddj-47	544	3	]	]	X
ddj-47	544	4	0	0	SYM
ddj-47	544	5	0	0	NUM
ddj-47	544	6	glutathione	glutathione	NOUN
ddj-47	544	7	s	s	NOUN
ddj-47	544	8	-	-	NOUN
ddj-47	544	9	transferase	transferase	NOUN
ddj-47	544	10	[	[	X
ddj-47	544	11	3,7	3,7	NUM
ddj-47	544	12	]	]	SYM
ddj-47	544	13	0	0	NUM
ddj-47	544	14	0	0	NUM
ddj-47	545	1	[	[	X
ddj-47	545	2	28,32	28,32	X
ddj-47	545	3	]	]	X
ddj-47	545	4	0	0	NUM
ddj-47	545	5	3	3	NUM
ddj-47	545	6	[	[	X
ddj-47	545	7	54,58	54,58	NUM
ddj-47	545	8	]	]	SYM
ddj-47	545	9	0	0	NUM
ddj-47	545	10	0	0	NUM
ddj-47	546	1	[	[	X
ddj-47	546	2	60,63	60,63	NOUN
ddj-47	546	3	]	]	X
ddj-47	546	4	0	0	NUM
ddj-47	546	5	0	0	NUM
ddj-47	546	6	bamhi	bamhi	VERB
ddj-47	546	7	[	[	X
ddj-47	546	8	2,8	2,8	X
ddj-47	546	9	]	]	PUNCT
ddj-47	546	10	0	0	NUM
ddj-47	546	11	0	0	NUM
ddj-47	547	1	[	[	X
ddj-47	547	2	46,48	46,48	NUM
ddj-47	547	3	]	]	PUNCT
ddj-47	547	4	0	0	NUM
ddj-47	547	5	0	0	NUM
ddj-47	548	1	[	[	X
ddj-47	548	2	70,72	70,72	X
ddj-47	548	3	]	]	X
ddj-47	548	4	0	0	NUM
ddj-47	548	5	0	0	NUM
ddj-47	549	1	[	[	X
ddj-47	549	2	95,100	95,100	NUM
ddj-47	549	3	]	]	PUNCT
ddj-47	549	4	0	0	NUM
ddj-47	549	5	0	0	NUM
ddj-47	550	1	[	[	X
ddj-47	550	2	105,112	105,112	NUM
ddj-47	550	3	]	]	SYM
ddj-47	550	4	0	0	NUM
ddj-47	550	5	0	0	PUNCT
ddj-47	551	1	[	[	X
ddj-47	551	2	138,144	138,144	NUM
ddj-47	551	3	]	]	PUNCT
ddj-47	551	4	0	0	NUM
ddj-47	551	5	0	0	PUNCT
ddj-47	552	1	[	[	X
ddj-47	552	2	174,180	174,180	NUM
ddj-47	552	3	]	]	PUNCT
ddj-47	552	4	0	0	NUM
ddj-47	552	5	0	0	PUNCT
ddj-47	553	1	[	[	X
ddj-47	553	2	183,185	183,185	NUM
ddj-47	553	3	]	]	SYM
ddj-47	553	4	0	0	NUM
ddj-47	553	5	1	1	NUM
ddj-47	553	6	table	table	NOUN
ddj-47	553	7	5	5	NUM
ddj-47	553	8	.	.	PUNCT
ddj-47	554	1	the	the	DET
ddj-47	554	2	test	test	NOUN
ddj-47	554	3	for	for	ADP
ddj-47	554	4	beta	beta	ADJ
ddj-47	554	5	sheets	sheet	NOUN
ddj-47	554	6	of	of	ADP
ddj-47	554	7	four	four	NUM
ddj-47	554	8	enzymes	enzyme	NOUN
ddj-47	554	9	.	.	PUNCT
ddj-47	555	1	the	the	DET
ddj-47	555	2	first	first	ADJ
ddj-47	555	3	column	column	NOUN
ddj-47	555	4	gives	give	VERB
ddj-47	555	5	the	the	DET
ddj-47	555	6	range	range	NOUN
ddj-47	555	7	of	of	ADP
ddj-47	555	8	amino	amino	NOUN
ddj-47	555	9	-	-	PUNCT
ddj-47	555	10	acids	acid	NOUN
ddj-47	555	11	defining	define	VERB
ddj-47	555	12	the	the	DET
ddj-47	555	13	beta	beta	ADJ
ddj-47	555	14	sheet	sheet	NOUN
ddj-47	555	15	in	in	ADP
ddj-47	555	16	question	question	NOUN
ddj-47	555	17	.	.	PUNCT
ddj-47	556	1	the	the	DET
ddj-47	556	2	vectors	vector	NOUN
ddj-47	556	3	in	in	ADP
ddj-47	556	4	second	second	ADJ
ddj-47	556	5	and	and	CCONJ
ddj-47	556	6	third	third	ADJ
ddj-47	556	7	column	column	NOUN
ddj-47	556	8	give	give	VERB
ddj-47	556	9	the	the	DET
ddj-47	556	10	numbers	number	NOUN
ddj-47	556	11	of	of	ADP
ddj-47	556	12	failures	failure	NOUN
ddj-47	556	13	for	for	ADP
ddj-47	556	14	k	k	PROPN
ddj-47	556	15	=	=	SYM
ddj-47	556	16	1	1	NUM
ddj-47	556	17	for	for	ADP
ddj-47	556	18	(	(	PUNCT
ddj-47	556	19	n	n	CCONJ
ddj-47	556	20	,	,	PUNCT
ddj-47	556	21	n+	n+	ADJ
ddj-47	556	22	1	1	NUM
ddj-47	556	23	)	)	PUNCT
ddj-47	556	24	helix	helix	NOUN
ddj-47	556	25	.	.	PUNCT
ddj-47	557	1	one	one	PRON
ddj-47	557	2	might	might	AUX
ddj-47	557	3	think	think	VERB
ddj-47	557	4	that	that	SCONJ
ddj-47	557	5	loops	loop	NOUN
ddj-47	557	6	could	could	AUX
ddj-47	557	7	contain	contain	VERB
ddj-47	557	8	amino	amino	NOUN
ddj-47	557	9	-	-	PUNCT
ddj-47	557	10	acids	acid	NOUN
ddj-47	557	11	for	for	ADP
ddj-47	557	12	which	which	PRON
ddj-47	557	13	the	the	DET
ddj-47	557	14	hydrogen	hydrogen	NOUN
ddj-47	557	15	bonds	bond	NOUN
ddj-47	557	16	to	to	ADP
ddj-47	557	17	neighbors	neighbor	NOUN
ddj-47	557	18	are	be	AUX
ddj-47	557	19	not	not	PART
ddj-47	557	20	possible	possible	ADJ
ddj-47	557	21	.	.	PUNCT
ddj-47	558	1	the	the	DET
ddj-47	558	2	test	test	NOUN
ddj-47	558	3	for	for	ADP
ddj-47	558	4	bamhi	bamhi	NOUN
ddj-47	558	5	showed	show	VERB
ddj-47	558	6	that	that	SCONJ
ddj-47	558	7	this	this	PRON
ddj-47	558	8	is	be	AUX
ddj-47	558	9	not	not	PART
ddj-47	558	10	the	the	DET
ddj-47	558	11	case	case	NOUN
ddj-47	558	12	.	.	PUNCT
ddj-47	559	1	only	only	ADV
ddj-47	559	2	single	single	ADJ
ddj-47	559	3	loop	loop	NOUN
ddj-47	559	4	failed	fail	VERB
ddj-47	559	5	for	for	ADP
ddj-47	559	6	y	y	PROPN
ddj-47	559	7	=	=	SYM
ddj-47	559	8	z	z	NOUN
ddj-47	559	9	option	option	NOUN
ddj-47	559	10	for	for	ADP
ddj-47	559	11	k	k	PROPN
ddj-47	559	12	=	=	SYM
ddj-47	559	13	1	1	NUM
ddj-47	559	14	,	,	PUNCT
ddj-47	559	15	2	2	NUM
ddj-47	559	16	...	...	PUNCT
ddj-47	559	17	,	,	PUNCT
ddj-47	560	1	4	4	NUM
ddj-47	560	2	and	and	CCONJ
ddj-47	560	3	this	this	PRON
ddj-47	560	4	occurred	occur	VERB
ddj-47	560	5	for	for	ADP
ddj-47	560	6	k	k	PROPN
ddj-47	560	7	=	=	SYM
ddj-47	560	8	1	1	X
ddj-47	560	9	.	.	PUNCT
ddj-47	561	1	the	the	DET
ddj-47	561	2	remaining	remain	VERB
ddj-47	561	3	test	test	NOUN
ddj-47	561	4	is	be	AUX
ddj-47	561	5	for	for	ADP
ddj-47	561	6	whether	whether	SCONJ
ddj-47	561	7	the	the	DET
ddj-47	561	8	y	y	NOUN
ddj-47	561	9	=	=	SYM
ddj-47	561	10	z	z	NOUN
ddj-47	561	11	pairing	pairing	NOUN
ddj-47	561	12	indeed	indeed	ADV
ddj-47	561	13	can	can	AUX
ddj-47	561	14	fix	fix	VERB
ddj-47	561	15	the	the	DET
ddj-47	561	16	dna	dna	PROPN
ddj-47	561	17	sequence	sequence	NOUN
ddj-47	561	18	completely	completely	ADV
ddj-47	561	19	.	.	PUNCT
ddj-47	562	1	bamhi	bamhi	NOUN
ddj-47	562	2	begins	begin	VERB
ddj-47	562	3	as	as	SCONJ
ddj-47	562	4	met	meet	VERB
ddj-47	562	5	glu	glu	PROPN
ddj-47	562	6	val	val	PROPN
ddj-47	562	7	glu	glu	PROPN
ddj-47	562	8	lys	lys	PROPN
ddj-47	562	9	glu	glu	PROPN
ddj-47	562	10	phe	phe	PROPN
ddj-47	562	11	ile	ile	PROPN
ddj-47	562	12	.....	.....	PROPN
ddj-47	562	13	for	for	ADP
ddj-47	562	14	beta	beta	ADJ
ddj-47	562	15	sheet	sheet	NOUN
ddj-47	562	16	beginning	begin	VERB
ddj-47	562	17	from	from	ADP
ddj-47	562	18	second	second	ADJ
ddj-47	562	19	amino	amino	NOUN
ddj-47	562	20	-	-	PUNCT
ddj-47	562	21	acid	acid	NOUN
ddj-47	562	22	requires	require	VERB
ddj-47	562	23	that	that	SCONJ
ddj-47	562	24	the	the	DET
ddj-47	562	25	y	y	PROPN
ddj-47	562	26	=	=	PROPN
ddj-47	562	27	z	z	NOUN
ddj-47	562	28	rules	rule	NOUN
ddj-47	562	29	holds	hold	VERB
ddj-47	562	30	true	true	ADJ
ddj-47	562	31	for	for	ADP
ddj-47	562	32	subsequent	subsequent	ADJ
ddj-47	562	33	codons	codon	NOUN
ddj-47	562	34	in	in	ADP
ddj-47	562	35	dna	dna	PROPN
ddj-47	562	36	sequence	sequence	NOUN
ddj-47	562	37	aag	aag	PROPN
ddj-47	562	38	ctt	ctt	PROPN
ddj-47	562	39	cct	cct	PROPN
ddj-47	562	40	taa	taa	PROPN
ddj-47	562	41	ttc	ttc	PROPN
ddj-47	562	42	cgg	cgg	PROPN
ddj-47	562	43	aag	aag	PROPN
ddj-47	562	44	...	...	PUNCT
ddj-47	563	1	[	[	X
ddj-47	563	2	4	4	NUM
ddj-47	563	3	]	]	PUNCT
ddj-47	563	4	.	.	PUNCT
ddj-47	564	1	by	by	ADP
ddj-47	564	2	comparing	compare	VERB
ddj-47	564	3	the	the	DET
ddj-47	564	4	z	z	NOUN
ddj-47	564	5	of	of	ADP
ddj-47	564	6	a	a	DET
ddj-47	564	7	given	give	VERB
ddj-47	564	8	codon	codon	NOUN
ddj-47	564	9	in	in	ADP
ddj-47	564	10	beta	beta	NOUN
ddj-47	564	11	sheet	sheet	NOUN
ddj-47	564	12	to	to	ADP
ddj-47	564	13	the	the	DET
ddj-47	564	14	y	y	PROPN
ddj-47	564	15	of	of	ADP
ddj-47	564	16	the	the	DET
ddj-47	564	17	next	next	ADJ
ddj-47	564	18	codon	codon	NOUN
ddj-47	564	19	inside	inside	ADP
ddj-47	564	20	beta	beta	NOUN
ddj-47	564	21	sheet	sheet	NOUN
ddj-47	564	22	one	one	NUM
ddj-47	564	23	finds	find	VERB
ddj-47	564	24	that	that	SCONJ
ddj-47	564	25	the	the	DET
ddj-47	564	26	y	y	PROPN
ddj-47	564	27	(	(	PUNCT
ddj-47	564	28	n	n	CCONJ
ddj-47	564	29	)	)	PUNCT
ddj-47	564	30	=	=	SYM
ddj-47	564	31	z(n+	z(n+	NUM
ddj-47	564	32	1	1	NUM
ddj-47	564	33	)	)	PUNCT
ddj-47	564	34	or	or	CCONJ
ddj-47	564	35	z(n	z(n	NOUN
ddj-47	564	36	)	)	PUNCT
ddj-47	564	37	=	=	SYM
ddj-47	564	38	y	y	PROPN
ddj-47	564	39	(	(	PUNCT
ddj-47	564	40	n	n	PROPN
ddj-47	564	41	+	+	CCONJ
ddj-47	564	42	1	1	NUM
ddj-47	564	43	)	)	PUNCT
ddj-47	564	44	fails	fail	VERB
ddj-47	564	45	.	.	PUNCT
ddj-47	565	1	similar	similar	ADJ
ddj-47	565	2	conclusion	conclusion	NOUN
ddj-47	565	3	follows	follow	VERB
ddj-47	565	4	from	from	ADP
ddj-47	565	5	an	an	DET
ddj-47	565	6	analogous	analogous	ADJ
ddj-47	565	7	check	check	NOUN
ddj-47	565	8	for	for	ADP
ddj-47	565	9	the	the	DET
ddj-47	565	10	first	first	ADJ
ddj-47	565	11	alpha	alpha	NOUN
ddj-47	565	12	helix	helix	NOUN
ddj-47	565	13	.	.	PUNCT
ddj-47	566	1	situation	situation	NOUN
ddj-47	566	2	is	be	AUX
ddj-47	566	3	saved	save	VERB
ddj-47	566	4	if	if	SCONJ
ddj-47	566	5	the	the	DET
ddj-47	566	6	quantum	quantum	ADJ
ddj-47	566	7	counterpart	counterpart	NOUN
ddj-47	566	8	of	of	ADP
ddj-47	566	9	wobble	wobble	ADJ
ddj-47	566	10	base	base	NOUN
ddj-47	566	11	pairing	pairing	NOUN
ddj-47	566	12	is	be	AUX
ddj-47	566	13	at	at	ADP
ddj-47	566	14	work	work	NOUN
ddj-47	566	15	so	so	SCONJ
ddj-47	566	16	that	that	SCONJ
ddj-47	566	17	the	the	DET
ddj-47	566	18	flux	flux	NOUN
ddj-47	566	19	tube	tube	NOUN
ddj-47	566	20	from	from	ADP
ddj-47	566	21	trna	trna	NOUN
ddj-47	566	22	to	to	ADP
ddj-47	566	23	n	n	PROPN
ddj-47	566	24	−h	−h	ADV
ddj-47	566	25	would	would	AUX
ddj-47	566	26	in	in	ADP
ddj-47	566	27	superposition	superposition	NOUN
ddj-47	566	28	of	of	ADP
ddj-47	566	29	colors	color	NOUN
ddj-47	566	30	(	(	PUNCT
ddj-47	566	31	quark	quark	NOUN
ddj-47	566	32	pairs	pair	NOUN
ddj-47	566	33	)	)	PUNCT
ddj-47	566	34	corresponding	correspond	VERB
ddj-47	566	35	to	to	AUX
ddj-47	566	36	superposition	superposition	NOUN
ddj-47	566	37	nucleotides	nucleotide	NOUN
ddj-47	566	38	z	z	NOUN
ddj-47	566	39	in	in	ADP
ddj-47	566	40	codons	codon	NOUN
ddj-47	567	1	xy	xy	PROPN
ddj-47	567	2	z	z	NOUN
ddj-47	567	3	for	for	ADP
ddj-47	567	4	given	give	VERB
ddj-47	567	5	x	x	PUNCT
ddj-47	567	6	and	and	CCONJ
ddj-47	567	7	y	y	PROPN
ddj-47	567	8	coding	code	VERB
ddj-47	567	9	for	for	ADP
ddj-47	567	10	the	the	DET
ddj-47	567	11	amino	amino	NOUN
ddj-47	567	12	-	-	PUNCT
ddj-47	567	13	acid	acid	NOUN
ddj-47	567	14	in	in	ADP
ddj-47	567	15	question	question	NOUN
ddj-47	567	16	.	.	PUNCT
ddj-47	568	1	hydrogen	hydrogen	NOUN
ddj-47	568	2	bonded	bond	VERB
ddj-47	568	3	amino	amino	NOUN
ddj-47	568	4	-	-	PUNCT
ddj-47	568	5	acid	acid	NOUN
ddj-47	568	6	sequence	sequence	NOUN
ddj-47	568	7	would	would	AUX
ddj-47	568	8	behave	behave	VERB
ddj-47	568	9	as	as	SCONJ
ddj-47	568	10	if	if	SCONJ
ddj-47	568	11	it	it	PRON
ddj-47	568	12	were	be	AUX
ddj-47	568	13	coded	code	VERB
ddj-47	568	14	by	by	ADP
ddj-47	568	15	the	the	DET
ddj-47	568	16	unique	unique	ADJ
ddj-47	568	17	dna	dna	NOUN
ddj-47	568	18	sequence	sequence	NOUN
ddj-47	568	19	.	.	PUNCT
ddj-47	569	1	note	note	VERB
ddj-47	569	2	that	that	SCONJ
ddj-47	569	3	for	for	ADP
ddj-47	569	4	a	a	DET
ddj-47	569	5	given	give	VERB
ddj-47	569	6	amino	amino	NOUN
ddj-47	569	7	-	-	PUNCT
ddj-47	569	8	acid	acid	NOUN
ddj-47	569	9	x	x	PUNCT
ddj-47	569	10	is	be	AUX
ddj-47	569	11	unique	unique	ADJ
ddj-47	569	12	except	except	SCONJ
ddj-47	569	13	for	for	ADP
ddj-47	569	14	leu	leu	PROPN
ddj-47	569	15	and	and	CCONJ
ddj-47	569	16	arg	arg	NOUN
ddj-47	569	17	and	and	CCONJ
ddj-47	569	18	y	y	PROPN
ddj-47	569	19	is	be	AUX
ddj-47	569	20	unique	unique	ADJ
ddj-47	569	21	except	except	SCONJ
ddj-47	569	22	for	for	ADP
ddj-47	569	23	ser	ser	NOUN
ddj-47	569	24	.	.	PUNCT
ddj-47	570	1	the	the	DET
ddj-47	570	2	n	n	ADV
ddj-47	570	3	−	−	PROPN
ddj-47	570	4	h	h	NOUN
ddj-47	570	5	:	:	PUNCT
ddj-47	570	6	s	s	PART
ddj-47	570	7	and	and	CCONJ
ddj-47	570	8	o	o	X
ddj-47	571	1	=	=	NOUN
ddj-47	571	2	:	:	PUNCT
ddj-47	571	3	s	s	AUX
ddj-47	571	4	for	for	ADP
ddj-47	571	5	which	which	PRON
ddj-47	571	6	hydrogen	hydrogen	NOUN
ddj-47	571	7	bonds	bond	NOUN
ddj-47	571	8	are	be	AUX
ddj-47	571	9	lacking	lack	VERB
ddj-47	571	10	could	could	AUX
ddj-47	571	11	form	form	VERB
ddj-47	571	12	hydrogen	hydrogen	NOUN
ddj-47	571	13	bonds	bond	NOUN
ddj-47	571	14	with	with	ADP
ddj-47	571	15	water	water	NOUN
ddj-47	571	16	molecules	molecule	NOUN
ddj-47	571	17	and	and	CCONJ
ddj-47	571	18	o	o	NOUN
ddj-47	572	1	=	=	NOUN
ddj-47	572	2	:	:	PUNCT
ddj-47	572	3	s	s	VERB
ddj-47	572	4	could	could	AUX
ddj-47	572	5	have	have	VERB
ddj-47	572	6	long	long	ADJ
ddj-47	572	7	flux	flux	NOUN
ddj-47	572	8	tubes	tube	NOUN
ddj-47	572	9	with	with	ADP
ddj-47	572	10	other	other	ADJ
ddj-47	572	11	o	o	NOUN
ddj-47	572	12	=	=	PRON
ddj-47	572	13	:	:	PUNCT
ddj-47	572	14	s	s	X
ddj-47	572	15	in	in	ADP
ddj-47	572	16	the	the	DET
ddj-47	572	17	protein	protein	NOUN
ddj-47	572	18	.	.	PUNCT
ddj-47	573	1	2	2	X
ddj-47	573	2	.	.	X
ddj-47	573	3	option	option	NOUN
ddj-47	573	4	2	2	NUM
ddj-47	573	5	:	:	PUNCT
ddj-47	573	6	flux	flux	NOUN
ddj-47	573	7	tube	tube	NOUN
ddj-47	573	8	is	be	AUX
ddj-47	573	9	identified	identify	VERB
ddj-47	573	10	as	as	ADP
ddj-47	573	11	hydrogen	hydrogen	NOUN
ddj-47	573	12	bond	bond	NOUN
ddj-47	573	13	the	the	DET
ddj-47	573	14	following	follow	VERB
ddj-47	573	15	tables	table	NOUN
ddj-47	573	16	summarize	summarize	VERB
ddj-47	573	17	the	the	DET
ddj-47	573	18	results	result	NOUN
ddj-47	573	19	of	of	ADP
ddj-47	573	20	the	the	DET
ddj-47	573	21	test	test	NOUN
ddj-47	573	22	for	for	ADP
ddj-47	573	23	y	y	PROPN
ddj-47	573	24	=	=	PROPN
ddj-47	573	25	z	z	PROPN
ddj-47	573	26	and	and	CCONJ
ddj-47	573	27	y	y	NOUN
ddj-47	573	28	=	=	PUNCT
ddj-47	573	29	zc	zc	NOUN
ddj-47	573	30	option	option	NOUN
ddj-47	573	31	when	when	SCONJ
ddj-47	573	32	flux	flux	NOUN
ddj-47	573	33	tube	tube	NOUN
ddj-47	573	34	is	be	AUX
ddj-47	573	35	issn	issn	NOUN
ddj-47	573	36	:	:	PUNCT
ddj-47	573	37	2159	2159	NUM
ddj-47	573	38	-	-	SYM
ddj-47	573	39	0465	0465	NUM
ddj-47	573	40	dna	dna	PROPN
ddj-47	573	41	decipher	decipher	PROPN
ddj-47	573	42	journal	journal	PROPN
ddj-47	573	43	june	june	PROPN
ddj-47	573	44	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	573	45	published	publish	VERB
ddj-47	573	46	by	by	ADP
ddj-47	573	47	quantumdream	quantumdream	PROPN
ddj-47	573	48	,	,	PUNCT
ddj-47	573	49	inc	inc	PROPN
ddj-47	573	50	.	.	PROPN
ddj-47	573	51	dna	dna	PROPN
ddj-47	573	52	decipher	decipher	PROPN
ddj-47	573	53	journal	journal	NOUN
ddj-47	574	1	|	|	ADV
ddj-47	574	2	may	may	AUX
ddj-47	574	3	2013	2013	NUM
ddj-47	574	4	|	|	ADV
ddj-47	574	5	volume	volume	NOUN
ddj-47	574	6	3	3	NUM
ddj-47	574	7	|	|	NOUN
ddj-47	574	8	issue	issue	VERB
ddj-47	574	9	1	1	NUM
ddj-47	574	10	|	|	ADV
ddj-47	574	11	pp	pp	ADJ
ddj-47	574	12	.	.	PUNCT
ddj-47	575	1	58	58	NUM
ddj-47	575	2	-	-	SYM
ddj-47	575	3	88	88	NUM
ddj-47	575	4	75	75	NUM
ddj-47	575	5	pitkänen	pitkänen	NOUN
ddj-47	575	6	,	,	PUNCT
ddj-47	575	7	m.	m.	NOUN
ddj-47	575	8	,	,	PUNCT
ddj-47	575	9	a	a	DET
ddj-47	575	10	model	model	NOUN
ddj-47	575	11	for	for	ADP
ddj-47	575	12	protein	protein	NOUN
ddj-47	575	13	folding	folding	NOUN
ddj-47	575	14	and	and	CCONJ
ddj-47	575	15	biocatalysis	biocatalysis	NOUN
ddj-47	575	16	identified	identify	VERB
ddj-47	575	17	as	as	ADP
ddj-47	575	18	hydrogen	hydrogen	NOUN
ddj-47	575	19	bond	bond	NOUN
ddj-47	575	20	.	.	PUNCT
ddj-47	576	1	for	for	ADP
ddj-47	576	2	the	the	DET
ddj-47	576	3	first	first	ADJ
ddj-47	576	4	option	option	NOUN
ddj-47	576	5	the	the	DET
ddj-47	576	6	average	average	ADJ
ddj-47	576	7	length	length	NOUN
ddj-47	576	8	of	of	ADP
ddj-47	576	9	hydrogen	hydrogen	NOUN
ddj-47	576	10	bonded	bond	VERB
ddj-47	576	11	interval	interval	NOUN
ddj-47	576	12	would	would	AUX
ddj-47	576	13	be	be	AUX
ddj-47	576	14	around	around	ADV
ddj-47	576	15	5	5	NUM
ddj-47	576	16	amino	amino	NOUN
ddj-47	576	17	-	-	PUNCT
ddj-47	576	18	acids	acid	NOUN
ddj-47	576	19	for	for	ADP
ddj-47	576	20	k	k	X
ddj-47	576	21	=	=	SYM
ddj-47	576	22	4	4	NUM
ddj-47	576	23	helix	helix	NOUN
ddj-47	576	24	for	for	ADP
ddj-47	576	25	y	y	PROPN
ddj-47	576	26	=	=	SYM
ddj-47	576	27	z	z	PROPN
ddj-47	576	28	and	and	CCONJ
ddj-47	576	29	somewhat	somewhat	ADV
ddj-47	576	30	shorter	short	ADJ
ddj-47	576	31	for	for	ADP
ddj-47	576	32	y	y	PROPN
ddj-47	576	33	=	=	SYM
ddj-47	576	34	zc	zc	PROPN
ddj-47	576	35	.	.	PROPN
ddj-47	576	36	bamhi	bamhi	PROPN
ddj-47	576	37	is	be	AUX
ddj-47	576	38	exceptional	exceptional	ADJ
ddj-47	576	39	since	since	SCONJ
ddj-47	576	40	in	in	ADP
ddj-47	576	41	this	this	DET
ddj-47	576	42	case	case	NOUN
ddj-47	576	43	the	the	DET
ddj-47	576	44	length	length	NOUN
ddj-47	576	45	is	be	AUX
ddj-47	576	46	16.8	16.8	NUM
ddj-47	576	47	(	(	PUNCT
ddj-47	576	48	10.4	10.4	NUM
ddj-47	576	49	)	)	PUNCT
ddj-47	576	50	amino	amino	NOUN
ddj-47	576	51	-	-	PUNCT
ddj-47	576	52	acids	acid	NOUN
ddj-47	576	53	.	.	PUNCT
ddj-47	577	1	for	for	ADP
ddj-47	577	2	y	y	PROPN
ddj-47	577	3	=	=	SYM
ddj-47	577	4	z	z	PROPN
ddj-47	577	5	(	(	PUNCT
ddj-47	577	6	y	y	NOUN
ddj-47	577	7	=	=	SYM
ddj-47	577	8	zc	zc	PROPN
ddj-47	577	9	)	)	PUNCT
ddj-47	577	10	.	.	PUNCT
ddj-47	578	1	there	there	PRON
ddj-47	578	2	is	be	VERB
ddj-47	578	3	no	no	DET
ddj-47	578	4	clear	clear	ADJ
ddj-47	578	5	difference	difference	NOUN
ddj-47	578	6	between	between	ADP
ddj-47	578	7	the	the	DET
ddj-47	578	8	two	two	NUM
ddj-47	578	9	alternatives	alternative	NOUN
ddj-47	578	10	in	in	ADP
ddj-47	578	11	the	the	DET
ddj-47	578	12	case	case	NOUN
ddj-47	578	13	of	of	ADP
ddj-47	578	14	alpha	alpha	NOUN
ddj-47	578	15	helices	helix	NOUN
ddj-47	578	16	and	and	CCONJ
ddj-47	578	17	neither	neither	CCONJ
ddj-47	578	18	alternative	alternative	NOUN
ddj-47	578	19	looks	look	VERB
ddj-47	578	20	promising	promise	VERB
ddj-47	578	21	in	in	ADP
ddj-47	578	22	this	this	DET
ddj-47	578	23	case	case	NOUN
ddj-47	578	24	.	.	PUNCT
ddj-47	579	1	protein	protein	NOUN
ddj-47	579	2	l(3	l(3	PROPN
ddj-47	579	3	)	)	PUNCT
ddj-47	579	4	l(4	l(4	PROPN
ddj-47	579	5	)	)	PUNCT
ddj-47	579	6	l(5	l(5	PROPN
ddj-47	579	7	)	)	PUNCT
ddj-47	579	8	l(6	l(6	PROPN
ddj-47	579	9	)	)	PUNCT
ddj-47	579	10	asparagin	asparagin	NOUN
ddj-47	579	11	synthethase	synthethase	NOUN
ddj-47	579	12	y	y	PROPN
ddj-47	579	13	=	=	PROPN
ddj-47	579	14	z	z	PROPN
ddj-47	579	15	4.5	4.5	NUM
ddj-47	579	16	4.9	4.9	NUM
ddj-47	579	17	4.6	4.6	NUM
ddj-47	579	18	4.9	4.9	NUM
ddj-47	579	19	y	y	NOUN
ddj-47	579	20	=	=	SYM
ddj-47	579	21	zc	zc	PROPN
ddj-47	579	22	4.2	4.2	NUM
ddj-47	579	23	4.7	4.7	NUM
ddj-47	579	24	5.3	5.3	NUM
ddj-47	579	25	4.6	4.6	NUM
ddj-47	579	26	xylose	xylose	NOUN
ddj-47	579	27	isomerase	isomerase	ADJ
ddj-47	579	28	y	y	PROPN
ddj-47	579	29	=	=	SYM
ddj-47	579	30	z	z	NOUN
ddj-47	579	31	3.7	3.7	NUM
ddj-47	579	32	4.3	4.3	NUM
ddj-47	579	33	3.5	3.5	NUM
ddj-47	579	34	3.9	3.9	NUM
ddj-47	579	35	y	y	NOUN
ddj-47	579	36	=	=	PUNCT
ddj-47	579	37	zc	zc	PROPN
ddj-47	579	38	4.0	4.0	NUM
ddj-47	579	39	3.0	3.0	NUM
ddj-47	579	40	4.1	4.1	NUM
ddj-47	579	41	3.8	3.8	NUM
ddj-47	579	42	hydrolase	hydrolase	NOUN
ddj-47	579	43	y	y	PROPN
ddj-47	580	1	=	=	SYM
ddj-47	581	1	z	z	NOUN
ddj-47	582	1	5.7	5.7	NUM
ddj-47	582	2	5.1	5.1	NUM
ddj-47	582	3	4.2	4.2	NUM
ddj-47	582	4	4.3	4.3	NUM
ddj-47	582	5	y	y	NOUN
ddj-47	582	6	=	=	PUNCT
ddj-47	582	7	zc	zc	PROPN
ddj-47	582	8	4.6	4.6	NUM
ddj-47	582	9	5.0	5.0	NUM
ddj-47	582	10	6.1	6.1	NUM
ddj-47	582	11	5.1	5.1	NUM
ddj-47	582	12	glutathione	glutathione	NOUN
ddj-47	582	13	s	s	NOUN
ddj-47	582	14	-	-	NOUN
ddj-47	582	15	transferase	transferase	NOUN
ddj-47	582	16	y	y	NOUN
ddj-47	583	1	=	=	PUNCT
ddj-47	584	1	z	z	NOUN
ddj-47	584	2	5.1	5.1	NUM
ddj-47	584	3	5.8	5.8	NUM
ddj-47	584	4	4.6	4.6	NUM
ddj-47	584	5	4.0	4.0	NUM
ddj-47	584	6	y	y	NOUN
ddj-47	584	7	=	=	SYM
ddj-47	584	8	zc	zc	PROPN
ddj-47	584	9	4.5	4.5	NUM
ddj-47	584	10	3.6	3.6	NUM
ddj-47	584	11	4.0	4.0	NUM
ddj-47	584	12	4.7	4.7	NUM
ddj-47	584	13	bamhi	bamhi	VERB
ddj-47	584	14	y	y	NOUN
ddj-47	584	15	=	=	PUNCT
ddj-47	584	16	z	z	PROPN
ddj-47	584	17	11.3	11.3	NUM
ddj-47	584	18	16.8	16.8	NUM
ddj-47	584	19	15.6	15.6	NUM
ddj-47	584	20	12.9	12.9	NUM
ddj-47	584	21	y	y	NOUN
ddj-47	584	22	=	=	SYM
ddj-47	584	23	zc	zc	PROPN
ddj-47	584	24	16.8	16.8	NUM
ddj-47	584	25	10.4	10.4	NUM
ddj-47	584	26	12.1	12.1	NUM
ddj-47	584	27	12.9	12.9	NUM
ddj-47	584	28	table	table	NOUN
ddj-47	584	29	6	6	NUM
ddj-47	584	30	.	.	PUNCT
ddj-47	585	1	the	the	DET
ddj-47	585	2	average	average	ADJ
ddj-47	585	3	number	number	NOUN
ddj-47	585	4	l(k	l(k	PROPN
ddj-47	585	5	)	)	PUNCT
ddj-47	585	6	of	of	ADP
ddj-47	585	7	aminoacids	aminoacid	NOUN
ddj-47	585	8	in	in	ADP
ddj-47	585	9	the	the	DET
ddj-47	585	10	portion	portion	NOUN
ddj-47	585	11	of	of	ADP
ddj-47	585	12	amino	amino	NOUN
ddj-47	585	13	-	-	PUNCT
ddj-47	585	14	acid	acid	NOUN
ddj-47	585	15	sequence	sequence	NOUN
ddj-47	585	16	satisfying	satisfy	VERB
ddj-47	585	17	the	the	DET
ddj-47	585	18	conditions	condition	NOUN
ddj-47	585	19	making	make	VERB
ddj-47	585	20	possible	possible	ADJ
ddj-47	585	21	(	(	PUNCT
ddj-47	585	22	n	n	CCONJ
ddj-47	585	23	,	,	PUNCT
ddj-47	585	24	n+	n+	X
ddj-47	585	25	k	k	X
ddj-47	585	26	)	)	PUNCT
ddj-47	585	27	hydrogen	hydrogen	NOUN
ddj-47	585	28	bonding	bonding	NOUN
ddj-47	585	29	for	for	ADP
ddj-47	585	30	k	k	PROPN
ddj-47	585	31	=	=	SYM
ddj-47	585	32	3	3	NUM
ddj-47	585	33	,	,	PUNCT
ddj-47	585	34	4	4	NUM
ddj-47	585	35	,	,	PUNCT
ddj-47	585	36	5	5	NUM
ddj-47	585	37	,	,	PUNCT
ddj-47	585	38	6	6	NUM
ddj-47	585	39	for	for	ADP
ddj-47	585	40	y	y	NOUN
ddj-47	585	41	=	=	SYM
ddj-47	585	42	zc	zc	PROPN
ddj-47	585	43	and	and	CCONJ
ddj-47	585	44	y	y	NOUN
ddj-47	585	45	=	=	SYM
ddj-47	585	46	z	z	NOUN
ddj-47	585	47	option	option	NOUN
ddj-47	585	48	in	in	ADP
ddj-47	585	49	the	the	DET
ddj-47	585	50	case	case	NOUN
ddj-47	585	51	that	that	PRON
ddj-47	585	52	flux	flux	NOUN
ddj-47	585	53	tube	tube	NOUN
ddj-47	585	54	can	can	AUX
ddj-47	585	55	connect	connect	VERB
ddj-47	585	56	y	y	PROPN
ddj-47	585	57	(	(	PUNCT
ddj-47	585	58	n	n	CCONJ
ddj-47	585	59	)	)	PUNCT
ddj-47	585	60	to	to	ADP
ddj-47	585	61	z(n+	z(n+	PROPN
ddj-47	585	62	k	k	X
ddj-47	585	63	)	)	PUNCT
ddj-47	585	64	.	.	PUNCT
ddj-47	586	1	issn	issn	PROPN
ddj-47	586	2	:	:	PUNCT
ddj-47	586	3	2159	2159	NUM
ddj-47	586	4	-	-	SYM
ddj-47	586	5	0465	0465	NUM
ddj-47	586	6	dna	dna	PROPN
ddj-47	586	7	decipher	decipher	PROPN
ddj-47	586	8	journal	journal	PROPN
ddj-47	586	9	june	june	PROPN
ddj-47	586	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	586	11	published	publish	VERB
ddj-47	586	12	by	by	ADP
ddj-47	586	13	quantumdream	quantumdream	PROPN
ddj-47	586	14	,	,	PUNCT
ddj-47	586	15	inc	inc	PROPN
ddj-47	586	16	.	.	PROPN
ddj-47	586	17	dna	dna	PROPN
ddj-47	586	18	decipher	decipher	PROPN
ddj-47	586	19	journal	journal	NOUN
ddj-47	586	20	|	|	ADV
ddj-47	586	21	may	may	AUX
ddj-47	586	22	2013	2013	NUM
ddj-47	586	23	|	|	ADV
ddj-47	586	24	volume	volume	NOUN
ddj-47	586	25	3	3	NUM
ddj-47	586	26	|	|	NOUN
ddj-47	586	27	issue	issue	VERB
ddj-47	586	28	1	1	NUM
ddj-47	586	29	|	|	ADV
ddj-47	586	30	pp	pp	ADJ
ddj-47	586	31	.	.	PUNCT
ddj-47	587	1	58	58	NUM
ddj-47	587	2	-	-	SYM
ddj-47	587	3	88	88	NUM
ddj-47	587	4	76	76	NUM
ddj-47	587	5	pitkänen	pitkänen	NOUN
ddj-47	587	6	,	,	PUNCT
ddj-47	587	7	m.	m.	NOUN
ddj-47	587	8	,	,	PUNCT
ddj-47	587	9	a	a	DET
ddj-47	587	10	model	model	NOUN
ddj-47	587	11	for	for	ADP
ddj-47	587	12	protein	protein	NOUN
ddj-47	587	13	folding	folding	NOUN
ddj-47	587	14	and	and	CCONJ
ddj-47	587	15	biocatalysis	biocatalysis	NOUN
ddj-47	587	16	alpha	alpha	NOUN
ddj-47	587	17	helix	helix	NOUN
ddj-47	587	18	n(y	n(y	PROPN
ddj-47	587	19	=	=	PUNCT
ddj-47	587	20	z	z	X
ddj-47	587	21	)	)	PUNCT
ddj-47	587	22	n(y	n(y	PROPN
ddj-47	587	23	=	=	SYM
ddj-47	587	24	zc	zc	X
ddj-47	587	25	)	)	PUNCT
ddj-47	587	26	asparagin	asparagin	NOUN
ddj-47	587	27	synthethase	synthethase	NOUN
ddj-47	587	28	[	[	X
ddj-47	587	29	7,28	7,28	X
ddj-47	587	30	]	]	X
ddj-47	587	31	(	(	PUNCT
ddj-47	587	32	4,4,4,2	4,4,4,2	NUM
ddj-47	587	33	)	)	PUNCT
ddj-47	587	34	(	(	PUNCT
ddj-47	587	35	6,4,3,5	6,4,3,5	NUM
ddj-47	587	36	)	)	PUNCT
ddj-47	588	1	[	[	X
ddj-47	588	2	76,84	76,84	X
ddj-47	588	3	]	]	X
ddj-47	588	4	(	(	PUNCT
ddj-47	588	5	1,0,1,1	1,0,1,1	NUM
ddj-47	588	6	)	)	PUNCT
ddj-47	588	7	(	(	PUNCT
ddj-47	588	8	2,2,1,1	2,2,1,1	NUM
ddj-47	589	1	[	[	X
ddj-47	589	2	130,155	130,155	NUM
ddj-47	589	3	]	]	PUNCT
ddj-47	589	4	(	(	PUNCT
ddj-47	589	5	5,5,4,5	5,5,4,5	NUM
ddj-47	589	6	)	)	PUNCT
ddj-47	589	7	(	(	PUNCT
ddj-47	589	8	2,2,2,1	2,2,2,1	NUM
ddj-47	589	9	)	)	PUNCT
ddj-47	590	1	[	[	X
ddj-47	590	2	170,177	170,177	NUM
ddj-47	590	3	]	]	X
ddj-47	590	4	(	(	PUNCT
ddj-47	590	5	0,0,1,1	0,0,1,1	NUM
ddj-47	590	6	)	)	PUNCT
ddj-47	590	7	(	(	PUNCT
ddj-47	590	8	1,1,1,1	1,1,1,1	NUM
ddj-47	590	9	)	)	PUNCT
ddj-47	591	1	[	[	X
ddj-47	591	2	182,194	182,194	NUM
ddj-47	591	3	]	]	X
ddj-47	591	4	(	(	PUNCT
ddj-47	591	5	1,1,1,1	1,1,1,1	NUM
ddj-47	591	6	)	)	PUNCT
ddj-47	591	7	(	(	PUNCT
ddj-47	591	8	2,2,1,1	2,2,1,1	NUM
ddj-47	591	9	)	)	PUNCT
ddj-47	592	1	[	[	X
ddj-47	592	2	256,268	256,268	NUM
ddj-47	592	3	]	]	PUNCT
ddj-47	592	4	(	(	PUNCT
ddj-47	592	5	1,3,0,3	1,3,0,3	NUM
ddj-47	592	6	)	)	PUNCT
ddj-47	592	7	(	(	PUNCT
ddj-47	592	8	3,0,3,0	3,0,3,0	NUM
ddj-47	592	9	)	)	PUNCT
ddj-47	593	1	[	[	X
ddj-47	593	2	277,284	277,284	NUM
ddj-47	593	3	]	]	PUNCT
ddj-47	593	4	(	(	PUNCT
ddj-47	593	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	593	6	)	)	PUNCT
ddj-47	593	7	(	(	PUNCT
ddj-47	593	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	593	9	)	)	PUNCT
ddj-47	594	1	[	[	X
ddj-47	594	2	297,305	297,305	NUM
ddj-47	594	3	]	]	X
ddj-47	594	4	(	(	PUNCT
ddj-47	594	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	594	6	)	)	PUNCT
ddj-47	594	7	(	(	PUNCT
ddj-47	594	8	1,0,0,0	1,0,0,0	NUM
ddj-47	594	9	)	)	PUNCT
ddj-47	595	1	[	[	X
ddj-47	595	2	309,314	309,314	NUM
ddj-47	595	3	]	]	PUNCT
ddj-47	595	4	(	(	PUNCT
ddj-47	595	5	0,1,0,0	0,1,0,0	NUM
ddj-47	595	6	)	)	PUNCT
ddj-47	595	7	(	(	PUNCT
ddj-47	595	8	2,0,1,0	2,0,1,0	NUM
ddj-47	595	9	)	)	PUNCT
ddj-47	596	1	[	[	X
ddj-47	596	2	320,326	320,326	NUM
ddj-47	596	3	]	]	PUNCT
ddj-47	596	4	(	(	PUNCT
ddj-47	596	5	1,1,0,0	1,1,0,0	NUM
ddj-47	596	6	)	)	PUNCT
ddj-47	596	7	(	(	PUNCT
ddj-47	596	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	596	9	)	)	PUNCT
ddj-47	596	10	xylose	xylose	PROPN
ddj-47	596	11	isomerase	isomerase	NOUN
ddj-47	597	1	[	[	X
ddj-47	597	2	74,93	74,93	NUM
ddj-47	597	3	]	]	X
ddj-47	597	4	(	(	PUNCT
ddj-47	597	5	6,1,6,4	6,1,6,4	NUM
ddj-47	597	6	)	)	PUNCT
ddj-47	597	7	(	(	PUNCT
ddj-47	597	8	2,5,4,3	2,5,4,3	NUM
ddj-47	597	9	)	)	PUNCT
ddj-47	598	1	[	[	X
ddj-47	598	2	111,129	111,129	NUM
ddj-47	598	3	]	]	X
ddj-47	598	4	(	(	PUNCT
ddj-47	598	5	3,3,4,2	3,3,4,2	NUM
ddj-47	598	6	)	)	PUNCT
ddj-47	598	7	(	(	PUNCT
ddj-47	598	8	4,4,4,3	4,4,4,3	NUM
ddj-47	598	9	)	)	PUNCT
ddj-47	599	1	[	[	X
ddj-47	599	2	159,179	159,179	NUM
ddj-47	599	3	]	]	PUNCT
ddj-47	599	4	(	(	PUNCT
ddj-47	599	5	3,4,6,3	3,4,6,3	NUM
ddj-47	599	6	)	)	PUNCT
ddj-47	599	7	(	(	PUNCT
ddj-47	599	8	4,3,1,3	4,3,1,3	NUM
ddj-47	599	9	)	)	PUNCT
ddj-47	600	1	[	[	X
ddj-47	600	2	201,223	201,223	NUM
ddj-47	600	3	]	]	X
ddj-47	600	4	(	(	PUNCT
ddj-47	600	5	3,6,5,4	3,6,5,4	NUM
ddj-47	600	6	)	)	PUNCT
ddj-47	600	7	(	(	PUNCT
ddj-47	600	8	5,7,4,4	5,7,4,4	NUM
ddj-47	600	9	)	)	PUNCT
ddj-47	601	1	[	[	X
ddj-47	601	2	245,255	245,255	NUM
ddj-47	601	3	]	]	X
ddj-47	601	4	(	(	PUNCT
ddj-47	601	5	1,1,1,1	1,1,1,1	NUM
ddj-47	601	6	)	)	PUNCT
ddj-47	601	7	(	(	PUNCT
ddj-47	601	8	0,1,0,0	0,1,0,0	NUM
ddj-47	601	9	)	)	PUNCT
ddj-47	602	1	[	[	X
ddj-47	602	2	278,287	278,287	NUM
ddj-47	602	3	]	]	X
ddj-47	602	4	(	(	PUNCT
ddj-47	602	5	2,1,1,0)(his	2,1,1,0)(his	NOUN
ddj-47	602	6	-	-	PUNCT
ddj-47	602	7	tyr	tyr	NOUN
ddj-47	602	8	)	)	PUNCT
ddj-47	602	9	(	(	PUNCT
ddj-47	602	10	0,0,0,1	0,0,0,1	NOUN
ddj-47	602	11	)	)	PUNCT
ddj-47	603	1	[	[	X
ddj-47	603	2	314,327	314,327	NUM
ddj-47	603	3	]	]	X
ddj-47	603	4	(	(	PUNCT
ddj-47	603	5	1,2,3,3	1,2,3,3	NUM
ddj-47	603	6	)	)	PUNCT
ddj-47	603	7	(	(	PUNCT
ddj-47	603	8	2,3,2,2	2,3,2,2	NUM
ddj-47	603	9	)	)	PUNCT
ddj-47	604	1	[	[	X
ddj-47	604	2	349,374	349,374	NUM
ddj-47	604	3	]	]	PUNCT
ddj-47	604	4	(	(	PUNCT
ddj-47	604	5	4,3,8,6	4,3,8,6	NUM
ddj-47	604	6	)	)	PUNCT
ddj-47	604	7	(	(	PUNCT
ddj-47	604	8	5,8,1,3	5,8,1,3	NUM
ddj-47	604	9	)	)	PUNCT
ddj-47	605	1	[	[	X
ddj-47	605	2	376,386	376,386	NUM
ddj-47	605	3	]	]	PUNCT
ddj-47	605	4	(	(	PUNCT
ddj-47	605	5	4,0,2,3	4,0,2,3	NUM
ddj-47	605	6	)	)	PUNCT
ddj-47	605	7	(	(	PUNCT
ddj-47	605	8	1,4,3,0	1,4,3,0	NUM
ddj-47	605	9	)	)	PUNCT
ddj-47	606	1	[	[	X
ddj-47	606	2	393,399	393,399	NUM
ddj-47	606	3	]	]	PUNCT
ddj-47	606	4	(	(	PUNCT
ddj-47	606	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	606	6	)	)	PUNCT
ddj-47	606	7	(	(	PUNCT
ddj-47	606	8	1,0,0,0	1,0,0,0	NUM
ddj-47	606	9	)	)	PUNCT
ddj-47	607	1	[	[	X
ddj-47	607	2	404,414	404,414	NUM
ddj-47	607	3	]	]	PUNCT
ddj-47	607	4	(	(	PUNCT
ddj-47	607	5	1,1,2,1	1,1,2,1	NUM
ddj-47	607	6	)	)	PUNCT
ddj-47	607	7	(	(	PUNCT
ddj-47	607	8	3,3,1,1	3,3,1,1	NUM
ddj-47	607	9	)	)	PUNCT
ddj-47	608	1	[	[	X
ddj-47	608	2	424,435	424,435	NUM
ddj-47	608	3	]	]	PUNCT
ddj-47	608	4	(	(	PUNCT
ddj-47	608	5	1,2,0,2	1,2,0,2	NUM
ddj-47	608	6	)	)	PUNCT
ddj-47	608	7	(	(	PUNCT
ddj-47	608	8	3,2,3,1	3,2,3,1	NUM
ddj-47	608	9	)	)	PUNCT
ddj-47	608	10	hydrolase	hydrolase	NOUN
ddj-47	609	1	[	[	X
ddj-47	609	2	39,50	39,50	NUM
ddj-47	609	3	]	]	X
ddj-47	609	4	(	(	PUNCT
ddj-47	609	5	2,3,0,2	2,3,0,2	NUM
ddj-47	609	6	)	)	PUNCT
ddj-47	609	7	(	(	PUNCT
ddj-47	609	8	2,1,3,1	2,1,3,1	NUM
ddj-47	609	9	)	)	PUNCT
ddj-47	609	10	[	[	X
ddj-47	609	11	60,79	60,79	NOUN
ddj-47	609	12	]	]	X
ddj-47	609	13	(	(	PUNCT
ddj-47	609	14	4,2,2,4)(asn	4,2,2,4)(asn	PROPN
ddj-47	609	15	-	-	PUNCT
ddj-47	609	16	asp	asp	NOUN
ddj-47	609	17	)	)	PUNCT
ddj-47	609	18	(	(	PUNCT
ddj-47	609	19	4,4,5,2	4,4,5,2	NUM
ddj-47	609	20	)	)	PUNCT
ddj-47	610	1	[	[	X
ddj-47	610	2	93,113	93,113	NUM
ddj-47	610	3	]	]	X
ddj-47	610	4	(	(	PUNCT
ddj-47	610	5	2,1,4,4)(val	2,1,4,4)(val	NOUN
ddj-47	610	6	-	-	PUNCT
ddj-47	610	7	gly	gly	NOUN
ddj-47	610	8	)	)	PUNCT
ddj-47	610	9	(	(	PUNCT
ddj-47	610	10	3,2,1,1	3,2,1,1	X
ddj-47	610	11	)	)	PUNCT
ddj-47	611	1	[	[	X
ddj-47	611	2	115,121	115,121	NUM
ddj-47	611	3	]	]	PUNCT
ddj-47	611	4	(	(	PUNCT
ddj-47	611	5	0,1,0,0	0,1,0,0	NUM
ddj-47	611	6	)	)	PUNCT
ddj-47	611	7	(	(	PUNCT
ddj-47	611	8	0,1,0,0	0,1,0,0	NUM
ddj-47	611	9	)	)	PUNCT
ddj-47	612	1	[	[	X
ddj-47	612	2	126,134	126,134	NUM
ddj-47	612	3	]	]	PUNCT
ddj-47	612	4	(	(	PUNCT
ddj-47	612	5	0,1,1,1	0,1,1,1	NUM
ddj-47	612	6	)	)	PUNCT
ddj-47	612	7	(	(	PUNCT
ddj-47	612	8	1,0,0,0	1,0,0,0	NUM
ddj-47	612	9	)	)	PUNCT
ddj-47	613	1	[	[	X
ddj-47	613	2	143,155	143,155	NUM
ddj-47	613	3	]	]	PUNCT
ddj-47	613	4	(	(	PUNCT
ddj-47	613	5	0,1,1,1	0,1,1,1	NUM
ddj-47	613	6	)	)	PUNCT
ddj-47	613	7	(	(	PUNCT
ddj-47	613	8	1,0,1,1	1,0,1,1	NUM
ddj-47	613	9	)	)	PUNCT
ddj-47	613	10	glutathione	glutathione	NOUN
ddj-47	613	11	s	s	NOUN
ddj-47	613	12	-	-	NOUN
ddj-47	613	13	transferase	transferase	NOUN
ddj-47	613	14	[	[	X
ddj-47	613	15	12,24	12,24	X
ddj-47	613	16	]	]	PUNCT
ddj-47	613	17	(	(	PUNCT
ddj-47	613	18	1,4,2,4	1,4,2,4	NUM
ddj-47	613	19	)	)	PUNCT
ddj-47	613	20	(	(	PUNCT
ddj-47	613	21	5,2,3,1	5,2,3,1	NUM
ddj-47	613	22	)	)	PUNCT
ddj-47	614	1	[	[	X
ddj-47	614	2	65,76	65,76	NUM
ddj-47	614	3	]	]	X
ddj-47	614	4	(	(	PUNCT
ddj-47	614	5	3,1,1,0	3,1,1,0	NUM
ddj-47	614	6	)	)	PUNCT
ddj-47	614	7	(	(	PUNCT
ddj-47	614	8	2,1,1,1	2,1,1,1	NUM
ddj-47	614	9	)	)	PUNCT
ddj-47	615	1	[	[	X
ddj-47	615	2	83,108	83,108	NUM
ddj-47	615	3	]	]	PUNCT
ddj-47	615	4	(	(	PUNCT
ddj-47	615	5	5,3,5,5	5,3,5,5	NUM
ddj-47	615	6	)	)	PUNCT
ddj-47	615	7	(	(	PUNCT
ddj-47	615	8	5,3,3,2	5,3,3,2	NUM
ddj-47	615	9	)	)	PUNCT
ddj-47	616	1	[	[	X
ddj-47	616	2	111,134	111,134	NUM
ddj-47	616	3	]	]	PUNCT
ddj-47	616	4	(	(	PUNCT
ddj-47	616	5	4,5,5,4	4,5,5,4	NUM
ddj-47	616	6	)	)	PUNCT
ddj-47	616	7	(	(	PUNCT
ddj-47	616	8	4,5,3,3	4,5,3,3	NUM
ddj-47	616	9	)	)	PUNCT
ddj-47	617	1	[	[	X
ddj-47	617	2	150,166	150,166	NUM
ddj-47	617	3	]	]	PUNCT
ddj-47	617	4	(	(	PUNCT
ddj-47	617	5	2,2,3,0)(asp	2,2,3,0)(asp	NUM
ddj-47	617	6	-	-	SYM
ddj-47	617	7	leu	leu	NOUN
ddj-47	617	8	)	)	PUNCT
ddj-47	617	9	(	(	PUNCT
ddj-47	617	10	4,3,1,3	4,3,1,3	NUM
ddj-47	617	11	)	)	PUNCT
ddj-47	618	1	[	[	X
ddj-47	618	2	174,184	174,184	NUM
ddj-47	618	3	]	]	PUNCT
ddj-47	618	4	(	(	PUNCT
ddj-47	618	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	618	6	)	)	PUNCT
ddj-47	618	7	(	(	PUNCT
ddj-47	618	8	1,1,1,1	1,1,1,1	NUM
ddj-47	618	9	)	)	PUNCT
ddj-47	619	1	[	[	X
ddj-47	619	2	187,194	187,194	NUM
ddj-47	619	3	]	]	PUNCT
ddj-47	619	4	(	(	PUNCT
ddj-47	619	5	1,1,0,1	1,1,0,1	NUM
ddj-47	619	6	)	)	PUNCT
ddj-47	619	7	(	(	PUNCT
ddj-47	619	8	0,2,0,1	0,2,0,1	NOUN
ddj-47	619	9	)	)	PUNCT
ddj-47	619	10	bamhi	bamhi	VERB
ddj-47	620	1	[	[	X
ddj-47	620	2	10,18	10,18	X
ddj-47	620	3	]	]	X
ddj-47	620	4	(	(	PUNCT
ddj-47	620	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	620	6	)	)	PUNCT
ddj-47	620	7	(	(	PUNCT
ddj-47	620	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	620	9	)	)	PUNCT
ddj-47	621	1	[	[	X
ddj-47	621	2	20,34	20,34	NOUN
ddj-47	621	3	]	]	X
ddj-47	621	4	(	(	PUNCT
ddj-47	621	5	4,1,1,2	4,1,1,2	NUM
ddj-47	621	6	)	)	PUNCT
ddj-47	621	7	(	(	PUNCT
ddj-47	621	8	2,5,4,2	2,5,4,2	NUM
ddj-47	621	9	)	)	PUNCT
ddj-47	622	1	[	[	X
ddj-47	622	2	58,72	58,72	NUM
ddj-47	622	3	]	]	X
ddj-47	622	4	(	(	PUNCT
ddj-47	622	5	3,1,2,4	3,1,2,4	NUM
ddj-47	622	6	)	)	PUNCT
ddj-47	622	7	(	(	PUNCT
ddj-47	622	8	3,5,4,1	3,5,4,1	NUM
ddj-47	622	9	)	)	PUNCT
ddj-47	623	1	[	[	X
ddj-47	623	2	79,84	79,84	X
ddj-47	623	3	]	]	PUNCT
ddj-47	623	4	(	(	PUNCT
ddj-47	623	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	623	6	)	)	PUNCT
ddj-47	623	7	(	(	PUNCT
ddj-47	623	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	623	9	)	)	PUNCT
ddj-47	624	1	[	[	X
ddj-47	624	2	117,132	117,132	NUM
ddj-47	624	3	]	]	PUNCT
ddj-47	624	4	(	(	PUNCT
ddj-47	624	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	624	6	)	)	PUNCT
ddj-47	624	7	(	(	PUNCT
ddj-47	624	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	624	9	)	)	PUNCT
ddj-47	625	1	[	[	X
ddj-47	625	2	146,150	146,150	NUM
ddj-47	625	3	]	]	X
ddj-47	625	4	(	(	PUNCT
ddj-47	625	5	1,1,0,0	1,1,0,0	NUM
ddj-47	625	6	)	)	PUNCT
ddj-47	625	7	(	(	PUNCT
ddj-47	625	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	625	9	)	)	PUNCT
ddj-47	626	1	[	[	X
ddj-47	626	2	159,169	159,169	NUM
ddj-47	626	3	]	]	SYM
ddj-47	626	4	(	(	PUNCT
ddj-47	626	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	626	6	)	)	PUNCT
ddj-47	626	7	(	(	PUNCT
ddj-47	626	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	626	9	)	)	PUNCT
ddj-47	627	1	[	[	X
ddj-47	627	2	200,205	200,205	NUM
ddj-47	627	3	]	]	X
ddj-47	627	4	(	(	PUNCT
ddj-47	627	5	0,0,0,0	0,0,0,0	NOUN
ddj-47	627	6	)	)	PUNCT
ddj-47	627	7	(	(	PUNCT
ddj-47	627	8	0,0,0,0	0,0,0,0	NOUN
ddj-47	627	9	)	)	PUNCT
ddj-47	627	10	table	table	NOUN
ddj-47	627	11	7	7	NUM
ddj-47	627	12	.	.	PUNCT
ddj-47	628	1	the	the	DET
ddj-47	628	2	test	test	NOUN
ddj-47	628	3	for	for	ADP
ddj-47	628	4	alpha	alpha	ADJ
ddj-47	628	5	helices	helix	NOUN
ddj-47	628	6	of	of	ADP
ddj-47	628	7	four	four	NUM
ddj-47	628	8	enzymes	enzyme	NOUN
ddj-47	628	9	in	in	ADP
ddj-47	628	10	the	the	DET
ddj-47	628	11	case	case	NOUN
ddj-47	628	12	of	of	ADP
ddj-47	628	13	y	y	PROPN
ddj-47	628	14	(	(	PUNCT
ddj-47	628	15	n	n	CCONJ
ddj-47	628	16	)	)	PUNCT
ddj-47	628	17	=	=	NOUN
ddj-47	628	18	z(n	z(n	PROPN
ddj-47	628	19	+	+	CCONJ
ddj-47	628	20	k	k	NOUN
ddj-47	628	21	)	)	PUNCT
ddj-47	628	22	option	option	NOUN
ddj-47	628	23	.	.	PUNCT
ddj-47	629	1	the	the	DET
ddj-47	629	2	first	first	ADJ
ddj-47	629	3	column	column	NOUN
ddj-47	629	4	gives	give	VERB
ddj-47	629	5	the	the	DET
ddj-47	629	6	range	range	NOUN
ddj-47	629	7	of	of	ADP
ddj-47	629	8	amino	amino	NOUN
ddj-47	629	9	-	-	PUNCT
ddj-47	629	10	acids	acid	NOUN
ddj-47	629	11	defining	define	VERB
ddj-47	629	12	the	the	DET
ddj-47	629	13	alpha	alpha	ADJ
ddj-47	629	14	helix	helix	NOUN
ddj-47	629	15	in	in	ADP
ddj-47	629	16	question	question	NOUN
ddj-47	629	17	.	.	PUNCT
ddj-47	630	1	the	the	DET
ddj-47	630	2	vectors	vector	NOUN
ddj-47	630	3	in	in	ADP
ddj-47	630	4	second	second	ADJ
ddj-47	630	5	and	and	CCONJ
ddj-47	630	6	third	third	ADJ
ddj-47	630	7	column	column	NOUN
ddj-47	630	8	give	give	VERB
ddj-47	630	9	issn	issn	NOUN
ddj-47	630	10	:	:	PUNCT
ddj-47	630	11	2159	2159	NUM
ddj-47	630	12	-	-	SYM
ddj-47	630	13	0465	0465	NUM
ddj-47	630	14	dna	dna	PROPN
ddj-47	630	15	decipher	decipher	PROPN
ddj-47	630	16	journal	journal	PROPN
ddj-47	630	17	june	june	PROPN
ddj-47	630	18	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	630	19	published	publish	VERB
ddj-47	630	20	by	by	ADP
ddj-47	630	21	quantumdream	quantumdream	PROPN
ddj-47	630	22	,	,	PUNCT
ddj-47	630	23	inc	inc	PROPN
ddj-47	630	24	.	.	PROPN
ddj-47	630	25	dna	dna	PROPN
ddj-47	630	26	decipher	decipher	PROPN
ddj-47	630	27	journal	journal	NOUN
ddj-47	631	1	|	|	ADV
ddj-47	631	2	may	may	AUX
ddj-47	631	3	2013	2013	NUM
ddj-47	631	4	|	|	ADV
ddj-47	631	5	volume	volume	NOUN
ddj-47	631	6	3	3	NUM
ddj-47	631	7	|	|	NOUN
ddj-47	631	8	issue	issue	VERB
ddj-47	631	9	1	1	NUM
ddj-47	631	10	|	|	ADV
ddj-47	631	11	pp	pp	ADJ
ddj-47	631	12	.	.	PUNCT
ddj-47	632	1	58	58	NUM
ddj-47	632	2	-	-	SYM
ddj-47	632	3	88	88	NUM
ddj-47	632	4	77	77	NUM
ddj-47	632	5	pitkänen	pitkänen	NOUN
ddj-47	632	6	,	,	PUNCT
ddj-47	632	7	m.	m.	NOUN
ddj-47	632	8	,	,	PUNCT
ddj-47	632	9	a	a	DET
ddj-47	632	10	model	model	NOUN
ddj-47	632	11	for	for	ADP
ddj-47	632	12	protein	protein	NOUN
ddj-47	632	13	folding	folding	NOUN
ddj-47	632	14	and	and	CCONJ
ddj-47	632	15	biocatalysis	biocatalysis	NOUN
ddj-47	632	16	the	the	DET
ddj-47	632	17	numbers	number	NOUN
ddj-47	632	18	of	of	ADP
ddj-47	632	19	failures	failure	NOUN
ddj-47	632	20	for	for	ADP
ddj-47	632	21	k	k	PROPN
ddj-47	632	22	=	=	SYM
ddj-47	632	23	3	3	NUM
ddj-47	632	24	,	,	PUNCT
ddj-47	632	25	4	4	NUM
ddj-47	632	26	,	,	PUNCT
ddj-47	632	27	5	5	NUM
ddj-47	632	28	,	,	PUNCT
ddj-47	632	29	6	6	NUM
ddj-47	632	30	for	for	ADP
ddj-47	632	31	(	(	PUNCT
ddj-47	632	32	n	n	CCONJ
ddj-47	632	33	,	,	PUNCT
ddj-47	632	34	n+	n+	X
ddj-47	632	35	k	k	NOUN
ddj-47	632	36	)	)	PUNCT
ddj-47	632	37	helix	helix	NOUN
ddj-47	632	38	(	(	PUNCT
ddj-47	632	39	k	k	NOUN
ddj-47	632	40	=	=	SYM
ddj-47	632	41	4	4	NUM
ddj-47	632	42	is	be	AUX
ddj-47	632	43	the	the	DET
ddj-47	632	44	most	most	ADV
ddj-47	632	45	interesting	interesting	ADJ
ddj-47	632	46	value	value	NOUN
ddj-47	632	47	)	)	PUNCT
ddj-47	632	48	.	.	PUNCT
ddj-47	633	1	beta	beta	ADJ
ddj-47	633	2	sheet	sheet	NOUN
ddj-47	633	3	n(y	n(y	PROPN
ddj-47	633	4	=	=	PUNCT
ddj-47	633	5	z	z	X
ddj-47	633	6	)	)	PUNCT
ddj-47	634	1	n(y	n(y	PROPN
ddj-47	634	2	=	=	SYM
ddj-47	634	3	zc	zc	X
ddj-47	634	4	)	)	PUNCT
ddj-47	634	5	asparagin	asparagin	NOUN
ddj-47	634	6	synthethase	synthethase	NOUN
ddj-47	635	1	[	[	X
ddj-47	635	2	113,122	113,122	NUM
ddj-47	635	3	]	]	SYM
ddj-47	635	4	1	1	NUM
ddj-47	635	5	5	5	NUM
ddj-47	636	1	[	[	X
ddj-47	636	2	233,240	233,240	NUM
ddj-47	636	3	]	]	SYM
ddj-47	636	4	3	3	NUM
ddj-47	636	5	0	0	NUM
ddj-47	637	1	[	[	X
ddj-47	637	2	245,255	245,255	NUM
ddj-47	637	3	]	]	SYM
ddj-47	637	4	1	1	NUM
ddj-47	637	5	0	0	NUM
ddj-47	638	1	[	[	X
ddj-47	638	2	290,297	290,297	NUM
ddj-47	638	3	]	]	SYM
ddj-47	638	4	0	0	NUM
ddj-47	638	5	1	1	NUM
ddj-47	638	6	xylose	xylose	NOUN
ddj-47	638	7	isomerase	isomerase	NOUN
ddj-47	638	8	[	[	X
ddj-47	638	9	43,47	43,47	X
ddj-47	638	10	]	]	X
ddj-47	638	11	0	0	NUM
ddj-47	638	12	1	1	NUM
ddj-47	639	1	[	[	X
ddj-47	639	2	96,100	96,100	NUM
ddj-47	639	3	]	]	SYM
ddj-47	639	4	2	2	NUM
ddj-47	639	5	4	4	NUM
ddj-47	640	1	[	[	NOUN
ddj-47	640	2	134,140	134,140	NUM
ddj-47	640	3	]	]	SYM
ddj-47	640	4	2	2	NUM
ddj-47	640	5	0	0	NUM
ddj-47	641	1	[	[	X
ddj-47	641	2	262,267	262,267	NUM
ddj-47	641	3	]	]	SYM
ddj-47	641	4	2	2	NUM
ddj-47	641	5	1	1	NUM
ddj-47	641	6	[	[	X
ddj-47	641	7	291,295	291,295	NUM
ddj-47	641	8	]	]	SYM
ddj-47	641	9	0	0	NUM
ddj-47	641	10	1	1	NUM
ddj-47	641	11	hydrolase	hydrolase	NOUN
ddj-47	641	12	[	[	X
ddj-47	641	13	14,19	14,19	NUM
ddj-47	641	14	]	]	SYM
ddj-47	641	15	1	1	NUM
ddj-47	641	16	2	2	NUM
ddj-47	641	17	[	[	X
ddj-47	641	18	25,28	25,28	X
ddj-47	641	19	]	]	X
ddj-47	641	20	0	0	SYM
ddj-47	641	21	0	0	NUM
ddj-47	641	22	glutathione	glutathione	NOUN
ddj-47	641	23	s	s	NOUN
ddj-47	641	24	-	-	NOUN
ddj-47	641	25	transferase	transferase	NOUN
ddj-47	641	26	[	[	X
ddj-47	641	27	3,7	3,7	NUM
ddj-47	641	28	]	]	SYM
ddj-47	641	29	0	0	NUM
ddj-47	641	30	1	1	NUM
ddj-47	642	1	[	[	X
ddj-47	642	2	28,32	28,32	X
ddj-47	642	3	]	]	SYM
ddj-47	642	4	1	1	NUM
ddj-47	642	5	3	3	NUM
ddj-47	642	6	[	[	X
ddj-47	642	7	54,58	54,58	NUM
ddj-47	642	8	]	]	SYM
ddj-47	642	9	4	4	NUM
ddj-47	642	10	1	1	NUM
ddj-47	642	11	[	[	X
ddj-47	642	12	60,63	60,63	NOUN
ddj-47	642	13	]	]	SYM
ddj-47	642	14	0	0	NUM
ddj-47	642	15	0	0	NUM
ddj-47	642	16	bamhi	bamhi	VERB
ddj-47	642	17	[	[	X
ddj-47	642	18	2,8	2,8	X
ddj-47	642	19	]	]	PUNCT
ddj-47	642	20	0	0	NUM
ddj-47	642	21	0	0	NUM
ddj-47	643	1	[	[	X
ddj-47	643	2	46,48	46,48	NUM
ddj-47	643	3	]	]	PUNCT
ddj-47	643	4	0	0	NUM
ddj-47	643	5	0	0	NUM
ddj-47	644	1	[	[	X
ddj-47	644	2	70,72	70,72	X
ddj-47	644	3	]	]	X
ddj-47	644	4	2	2	NUM
ddj-47	644	5	0	0	NUM
ddj-47	645	1	[	[	X
ddj-47	645	2	95,100	95,100	NUM
ddj-47	645	3	]	]	PUNCT
ddj-47	645	4	0	0	NUM
ddj-47	645	5	0	0	NUM
ddj-47	646	1	[	[	X
ddj-47	646	2	105,112	105,112	NUM
ddj-47	646	3	]	]	SYM
ddj-47	646	4	4	4	NUM
ddj-47	646	5	0	0	NUM
ddj-47	647	1	[	[	X
ddj-47	647	2	138,144	138,144	NUM
ddj-47	647	3	]	]	PUNCT
ddj-47	647	4	0	0	NUM
ddj-47	647	5	0	0	PUNCT
ddj-47	648	1	[	[	X
ddj-47	648	2	174,180	174,180	NUM
ddj-47	648	3	]	]	PUNCT
ddj-47	648	4	0	0	NUM
ddj-47	648	5	0	0	NUM
ddj-47	649	1	[	[	X
ddj-47	649	2	183,185	183,185	NUM
ddj-47	649	3	]	]	SYM
ddj-47	649	4	1	1	NUM
ddj-47	649	5	2	2	NUM
ddj-47	649	6	table	table	NOUN
ddj-47	649	7	8	8	NUM
ddj-47	649	8	.	.	PUNCT
ddj-47	650	1	the	the	DET
ddj-47	650	2	test	test	NOUN
ddj-47	650	3	for	for	ADP
ddj-47	650	4	beta	beta	ADJ
ddj-47	650	5	strands	strand	NOUN
ddj-47	650	6	of	of	ADP
ddj-47	650	7	four	four	NUM
ddj-47	650	8	enzymes	enzyme	NOUN
ddj-47	650	9	for	for	ADP
ddj-47	650	10	y	y	PROPN
ddj-47	650	11	(	(	PUNCT
ddj-47	650	12	n	n	CCONJ
ddj-47	650	13	)	)	PUNCT
ddj-47	650	14	=	=	NOUN
ddj-47	650	15	z(n	z(n	NOUN
ddj-47	650	16	+	+	CCONJ
ddj-47	650	17	1	1	NUM
ddj-47	650	18	)	)	PUNCT
ddj-47	650	19	option	option	NOUN
ddj-47	650	20	.	.	PUNCT
ddj-47	651	1	the	the	DET
ddj-47	651	2	first	first	ADJ
ddj-47	651	3	column	column	NOUN
ddj-47	651	4	gives	give	VERB
ddj-47	651	5	the	the	DET
ddj-47	651	6	range	range	NOUN
ddj-47	651	7	of	of	ADP
ddj-47	651	8	amino	amino	NOUN
ddj-47	651	9	-	-	PUNCT
ddj-47	651	10	acids	acid	NOUN
ddj-47	651	11	defining	define	VERB
ddj-47	651	12	the	the	DET
ddj-47	651	13	beta	beta	ADJ
ddj-47	651	14	sheet	sheet	NOUN
ddj-47	651	15	in	in	ADP
ddj-47	651	16	question	question	NOUN
ddj-47	651	17	.	.	PUNCT
ddj-47	652	1	the	the	DET
ddj-47	652	2	vectors	vector	NOUN
ddj-47	652	3	in	in	ADP
ddj-47	652	4	second	second	ADJ
ddj-47	652	5	and	and	CCONJ
ddj-47	652	6	third	third	ADJ
ddj-47	652	7	column	column	NOUN
ddj-47	652	8	give	give	VERB
ddj-47	652	9	the	the	DET
ddj-47	652	10	numbers	number	NOUN
ddj-47	652	11	of	of	ADP
ddj-47	652	12	failures	failure	NOUN
ddj-47	652	13	for	for	ADP
ddj-47	652	14	k	k	PROPN
ddj-47	652	15	=	=	SYM
ddj-47	652	16	1	1	NUM
ddj-47	652	17	for	for	ADP
ddj-47	652	18	(	(	PUNCT
ddj-47	652	19	n	n	CCONJ
ddj-47	652	20	,	,	PUNCT
ddj-47	652	21	n+	n+	ADJ
ddj-47	652	22	1	1	NUM
ddj-47	652	23	)	)	PUNCT
ddj-47	652	24	helix	helix	NOUN
ddj-47	652	25	.	.	PUNCT
ddj-47	653	1	3.3.4	3.3.4	NUM
ddj-47	653	2	are	be	AUX
ddj-47	653	3	=	=	X
ddj-47	653	4	o	o	X
ddj-47	653	5	−o	−o	PROPN
ddj-47	653	6	=	=	SYM
ddj-47	653	7	flux	flux	NOUN
ddj-47	653	8	tubes	tube	NOUN
ddj-47	653	9	present	present	ADJ
ddj-47	653	10	?	?	PUNCT
ddj-47	654	1	y	y	NOUN
ddj-47	654	2	=	=	PUNCT
ddj-47	655	1	z	z	NOUN
ddj-47	655	2	option	option	NOUN
ddj-47	655	3	for	for	ADP
ddj-47	655	4	the	the	DET
ddj-47	655	5	folding	fold	VERB
ddj-47	655	6	code	code	NOUN
ddj-47	655	7	assumes	assume	VERB
ddj-47	655	8	that	that	SCONJ
ddj-47	655	9	flux	flux	NOUN
ddj-47	655	10	tubes	tube	NOUN
ddj-47	655	11	can	can	AUX
ddj-47	655	12	connect	connect	VERB
ddj-47	655	13	acceptor	acceptor	NOUN
ddj-47	655	14	atoms	atom	NOUN
ddj-47	655	15	by	by	ADP
ddj-47	655	16	flux	flux	NOUN
ddj-47	655	17	tubes	tube	NOUN
ddj-47	655	18	.	.	PUNCT
ddj-47	656	1	the	the	DET
ddj-47	656	2	pairing	pairing	NOUN
ddj-47	656	3	would	would	AUX
ddj-47	656	4	be	be	AUX
ddj-47	656	5	y	y	NOUN
ddj-47	656	6	−	−	NOUN
ddj-47	656	7	yc	yc	ADP
ddj-47	656	8	pairing	pair	VERB
ddj-47	656	9	considered	consider	VERB
ddj-47	656	10	in	in	ADP
ddj-47	656	11	the	the	DET
ddj-47	656	12	original	original	ADJ
ddj-47	656	13	model	model	NOUN
ddj-47	656	14	as	as	ADP
ddj-47	656	15	the	the	DET
ddj-47	656	16	only	only	ADJ
ddj-47	656	17	possible	possible	ADJ
ddj-47	656	18	pairing	pairing	NOUN
ddj-47	656	19	.	.	PUNCT
ddj-47	657	1	in	in	ADP
ddj-47	657	2	amino	amino	NOUN
ddj-47	657	3	-	-	PUNCT
ddj-47	657	4	acids	acid	NOUN
ddj-47	657	5	only	only	ADV
ddj-47	657	6	o	o	NOUN
ddj-47	658	1	=	=	PRON
ddj-47	658	2	:	:	PUNCT
ddj-47	658	3	s	s	AUX
ddj-47	658	4	not	not	PART
ddj-47	658	5	acting	act	VERB
ddj-47	658	6	as	as	ADP
ddj-47	658	7	acceptors	acceptor	NOUN
ddj-47	658	8	for	for	ADP
ddj-47	658	9	ordinary	ordinary	ADJ
ddj-47	658	10	hydrogen	hydrogen	NOUN
ddj-47	658	11	bonds	bond	NOUN
ddj-47	658	12	could	could	AUX
ddj-47	658	13	have	have	VERB
ddj-47	658	14	flux	flux	NOUN
ddj-47	658	15	tube	tube	NOUN
ddj-47	658	16	connections	connection	NOUN
ddj-47	658	17	of	of	ADP
ddj-47	658	18	this	this	DET
ddj-47	658	19	kind	kind	NOUN
ddj-47	658	20	with	with	ADP
ddj-47	658	21	each	each	DET
ddj-47	658	22	other	other	ADJ
ddj-47	658	23	or	or	CCONJ
ddj-47	658	24	other	other	ADJ
ddj-47	658	25	molecules	molecule	NOUN
ddj-47	658	26	.	.	PUNCT
ddj-47	659	1	1	1	X
ddj-47	659	2	.	.	X
ddj-47	659	3	in	in	ADP
ddj-47	659	4	the	the	DET
ddj-47	659	5	case	case	NOUN
ddj-47	659	6	of	of	ADP
ddj-47	659	7	amino	amino	NOUN
ddj-47	659	8	-	-	PUNCT
ddj-47	659	9	acids	acids	NOUN
ddj-47	659	10	y	y	NOUN
ddj-47	659	11	−	−	PROPN
ddj-47	659	12	yc	yc	PROPN
ddj-47	659	13	pairing	pairing	NOUN
ddj-47	659	14	would	would	AUX
ddj-47	659	15	be	be	AUX
ddj-47	659	16	between	between	ADP
ddj-47	659	17	amino	amino	NOUN
ddj-47	659	18	-	-	PUNCT
ddj-47	659	19	acid	acid	NOUN
ddj-47	659	20	in	in	ADP
ddj-47	659	21	x12	x12	NUM
ddj-47	659	22	and	and	CCONJ
ddj-47	659	23	amino	amino	NOUN
ddj-47	659	24	-	-	PUNCT
ddj-47	659	25	acid	acid	NOUN
ddj-47	659	26	in	in	ADP
ddj-47	659	27	x34	x34	NUM
ddj-47	659	28	part	part	NOUN
ddj-47	659	29	of	of	ADP
ddj-47	659	30	the	the	DET
ddj-47	659	31	code	code	NOUN
ddj-47	659	32	table	table	NOUN
ddj-47	659	33	.	.	PUNCT
ddj-47	660	1	these	these	DET
ddj-47	660	2	connections	connection	NOUN
ddj-47	660	3	would	would	AUX
ddj-47	660	4	be	be	AUX
ddj-47	660	5	typically	typically	ADV
ddj-47	660	6	associated	associate	VERB
ddj-47	660	7	with	with	ADP
ddj-47	660	8	the	the	DET
ddj-47	660	9	portions	portion	NOUN
ddj-47	660	10	of	of	ADP
ddj-47	660	11	the	the	DET
ddj-47	660	12	protein	protein	NOUN
ddj-47	660	13	between	between	ADP
ddj-47	660	14	alpha	alpha	NOUN
ddj-47	660	15	helices	helix	NOUN
ddj-47	660	16	and	and	CCONJ
ddj-47	660	17	beta	beta	NOUN
ddj-47	660	18	sheets	sheet	NOUN
ddj-47	660	19	.	.	PUNCT
ddj-47	661	1	the	the	DET
ddj-47	661	2	k	k	NOUN
ddj-47	661	3	:	:	PUNCT
ddj-47	661	4	th	th	X
ddj-47	661	5	amino	amino	NOUN
ddj-47	661	6	-	-	PUNCT
ddj-47	661	7	acid	acid	NOUN
ddj-47	661	8	(	(	PUNCT
ddj-47	661	9	k	k	NOUN
ddj-47	661	10	=	=	SYM
ddj-47	661	11	3	3	NUM
ddj-47	661	12	,	,	PUNCT
ddj-47	661	13	4	4	NUM
ddj-47	661	14	or	or	CCONJ
ddj-47	661	15	5	5	NUM
ddj-47	661	16	)	)	PUNCT
ddj-47	661	17	following	follow	VERB
ddj-47	661	18	pro	pro	X
ddj-47	661	19	would	would	AUX
ddj-47	661	20	be	be	AUX
ddj-47	661	21	an	an	DET
ddj-47	661	22	exception	exception	NOUN
ddj-47	661	23	to	to	ADP
ddj-47	661	24	this	this	DET
ddj-47	661	25	rule	rule	NOUN
ddj-47	661	26	and	and	CCONJ
ddj-47	661	27	this	this	DET
ddj-47	661	28	kind	kind	NOUN
ddj-47	661	29	of	of	ADP
ddj-47	661	30	flux	flux	NOUN
ddj-47	661	31	tubes	tube	NOUN
ddj-47	661	32	could	could	AUX
ddj-47	661	33	be	be	AUX
ddj-47	661	34	involved	involve	VERB
ddj-47	661	35	with	with	ADP
ddj-47	661	36	the	the	DET
ddj-47	661	37	long	long	ADJ
ddj-47	661	38	scale	scale	NOUN
ddj-47	661	39	stabilization	stabilization	NOUN
ddj-47	661	40	of	of	ADP
ddj-47	661	41	proteins	protein	NOUN
ddj-47	661	42	.	.	PUNCT
ddj-47	662	1	2	2	X
ddj-47	662	2	.	.	X
ddj-47	662	3	the	the	DET
ddj-47	662	4	o	o	NOUN
ddj-47	662	5	=	=	NOUN
ddj-47	662	6	atom	atom	NOUN
ddj-47	662	7	would	would	AUX
ddj-47	662	8	effectively	effectively	ADV
ddj-47	662	9	behave	behave	VERB
ddj-47	662	10	like	like	ADP
ddj-47	662	11	yc	yc	NOUN
ddj-47	662	12	.	.	PUNCT
ddj-47	663	1	depending	depend	VERB
ddj-47	663	2	on	on	ADP
ddj-47	663	3	whether	whether	SCONJ
ddj-47	663	4	it	it	PRON
ddj-47	663	5	corresponds	correspond	VERB
ddj-47	663	6	to	to	ADP
ddj-47	663	7	quark	quark	NOUN
ddj-47	663	8	or	or	CCONJ
ddj-47	663	9	antiquark	antiquark	NOUN
ddj-47	663	10	,	,	PUNCT
ddj-47	663	11	the	the	DET
ddj-47	663	12	corresponding	corresponding	ADJ
ddj-47	663	13	amino	amino	NOUN
ddj-47	663	14	-	-	PUNCT
ddj-47	663	15	acid	acid	NOUN
ddj-47	663	16	would	would	AUX
ddj-47	663	17	be	be	AUX
ddj-47	663	18	typically	typically	ADV
ddj-47	663	19	hydrophilic	hydrophilic	ADJ
ddj-47	663	20	or	or	CCONJ
ddj-47	663	21	hydrophobicor	hydrophobicor	NOUN
ddj-47	663	22	rather	rather	ADV
ddj-47	663	23	able	able	ADJ
ddj-47	663	24	to	to	PART
ddj-47	663	25	form	form	VERB
ddj-47	663	26	hydrogen	hydrogen	NOUN
ddj-47	663	27	bonds	bond	NOUN
ddj-47	663	28	or	or	CCONJ
ddj-47	663	29	not	not	PART
ddj-47	663	30	.	.	PUNCT
ddj-47	664	1	since	since	SCONJ
ddj-47	664	2	hydrophilic	hydrophilic	ADJ
ddj-47	664	3	and	and	CCONJ
ddj-47	664	4	hydrophobic	hydrophobic	NOUN
ddj-47	664	5	residues	residue	NOUN
ddj-47	664	6	tend	tend	VERB
ddj-47	664	7	to	to	PART
ddj-47	664	8	avoid	avoid	VERB
ddj-47	664	9	each	each	DET
ddj-47	664	10	other	other	ADJ
ddj-47	664	11	the	the	DET
ddj-47	664	12	flux	flux	NOUN
ddj-47	664	13	tubes	tube	NOUN
ddj-47	664	14	in	in	ADP
ddj-47	664	15	question	question	NOUN
ddj-47	664	16	should	should	AUX
ddj-47	664	17	be	be	AUX
ddj-47	664	18	rather	rather	ADV
ddj-47	664	19	long	long	ADJ
ddj-47	664	20	.	.	PUNCT
ddj-47	665	1	the	the	DET
ddj-47	665	2	phase	phase	NOUN
ddj-47	665	3	transitions	transition	NOUN
ddj-47	665	4	increasing	increase	VERB
ddj-47	665	5	planck	planck	NOUN
ddj-47	665	6	constant	constant	ADJ
ddj-47	665	7	might	might	AUX
ddj-47	665	8	make	make	VERB
ddj-47	665	9	issn	issn	NOUN
ddj-47	665	10	:	:	PUNCT
ddj-47	665	11	2159	2159	NUM
ddj-47	665	12	-	-	SYM
ddj-47	665	13	0465	0465	NUM
ddj-47	665	14	dna	dna	PROPN
ddj-47	665	15	decipher	decipher	PROPN
ddj-47	665	16	journal	journal	PROPN
ddj-47	665	17	june	june	PROPN
ddj-47	665	18	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	665	19	published	publish	VERB
ddj-47	665	20	by	by	ADP
ddj-47	665	21	quantumdream	quantumdream	PROPN
ddj-47	665	22	,	,	PUNCT
ddj-47	665	23	inc	inc	PROPN
ddj-47	665	24	.	.	PROPN
ddj-47	665	25	dna	dna	PROPN
ddj-47	665	26	decipher	decipher	PROPN
ddj-47	665	27	journal	journal	NOUN
ddj-47	666	1	|	|	ADV
ddj-47	666	2	may	may	AUX
ddj-47	666	3	2013	2013	NUM
ddj-47	666	4	|	|	ADV
ddj-47	666	5	volume	volume	NOUN
ddj-47	666	6	3	3	NUM
ddj-47	666	7	|	|	NOUN
ddj-47	666	8	issue	issue	VERB
ddj-47	666	9	1	1	NUM
ddj-47	666	10	|	|	ADV
ddj-47	666	11	pp	pp	ADJ
ddj-47	666	12	.	.	PUNCT
ddj-47	667	1	58	58	NUM
ddj-47	667	2	-	-	SYM
ddj-47	667	3	88	88	NUM
ddj-47	667	4	78	78	NUM
ddj-47	667	5	pitkänen	pitkänen	NOUN
ddj-47	667	6	,	,	PUNCT
ddj-47	667	7	m.	m.	NOUN
ddj-47	667	8	,	,	PUNCT
ddj-47	667	9	a	a	DET
ddj-47	667	10	model	model	NOUN
ddj-47	667	11	for	for	ADP
ddj-47	667	12	protein	protein	NOUN
ddj-47	667	13	folding	folding	NOUN
ddj-47	667	14	and	and	CCONJ
ddj-47	667	15	biocatalysis	biocatalysis	NOUN
ddj-47	667	16	this	this	PRON
ddj-47	667	17	possible	possible	ADJ
ddj-47	667	18	.	.	PUNCT
ddj-47	668	1	this	this	PRON
ddj-47	668	2	would	would	AUX
ddj-47	668	3	bring	bring	VERB
ddj-47	668	4	in	in	ADP
ddj-47	668	5	a	a	DET
ddj-47	668	6	strong	strong	ADJ
ddj-47	668	7	long	long	ADJ
ddj-47	668	8	range	range	NOUN
ddj-47	668	9	correlation	correlation	NOUN
ddj-47	668	10	between	between	ADP
ddj-47	668	11	the	the	DET
ddj-47	668	12	dynamics	dynamic	NOUN
ddj-47	668	13	of	of	ADP
ddj-47	668	14	the	the	DET
ddj-47	668	15	amino	amino	NOUN
ddj-47	668	16	-	-	PUNCT
ddj-47	668	17	acid	acid	NOUN
ddj-47	668	18	residues	residue	NOUN
ddj-47	668	19	belonging	belong	VERB
ddj-47	668	20	to	to	ADP
ddj-47	668	21	the	the	DET
ddj-47	668	22	first	first	ADJ
ddj-47	668	23	and	and	CCONJ
ddj-47	668	24	third	third	ADJ
ddj-47	668	25	(	(	PUNCT
ddj-47	668	26	second	second	ADJ
ddj-47	668	27	and	and	CCONJ
ddj-47	668	28	fourth	fourth	ADJ
ddj-47	668	29	)	)	PUNCT
ddj-47	668	30	column	column	NOUN
ddj-47	668	31	of	of	ADP
ddj-47	668	32	the	the	DET
ddj-47	668	33	code	code	NOUN
ddj-47	668	34	table	table	NOUN
ddj-47	668	35	.	.	PUNCT
ddj-47	669	1	3	3	X
ddj-47	669	2	.	.	X
ddj-47	669	3	=	=	NOUN
ddj-47	670	1	o	o	NOUN
ddj-47	671	1	−	−	NOUN
ddj-47	671	2	o	o	X
ddj-47	671	3	=	=	SYM
ddj-47	671	4	flux	flux	NOUN
ddj-47	671	5	tubes	tube	NOUN
ddj-47	671	6	could	could	AUX
ddj-47	671	7	be	be	AUX
ddj-47	671	8	also	also	ADV
ddj-47	671	9	between	between	ADP
ddj-47	671	10	different	different	ADJ
ddj-47	671	11	proteins	protein	NOUN
ddj-47	671	12	.	.	PUNCT
ddj-47	672	1	in	in	ADP
ddj-47	672	2	the	the	DET
ddj-47	672	3	case	case	NOUN
ddj-47	672	4	of	of	ADP
ddj-47	672	5	protein	protein	NOUN
ddj-47	672	6	-	-	PUNCT
ddj-47	672	7	ligand	ligand	NOUN
ddj-47	672	8	complex	complex	NOUN
ddj-47	672	9	the	the	DET
ddj-47	672	10	planck	planck	NOUN
ddj-47	672	11	constant	constant	ADJ
ddj-47	672	12	changing	change	VERB
ddj-47	672	13	phase	phase	NOUN
ddj-47	672	14	transition	transition	NOUN
ddj-47	672	15	reducing	reduce	VERB
ddj-47	672	16	the	the	DET
ddj-47	672	17	length	length	NOUN
ddj-47	672	18	of	of	ADP
ddj-47	672	19	this	this	DET
ddj-47	672	20	kind	kind	NOUN
ddj-47	672	21	of	of	ADP
ddj-47	672	22	flux	flux	NOUN
ddj-47	672	23	tube	tube	NOUN
ddj-47	672	24	could	could	AUX
ddj-47	672	25	bring	bring	VERB
ddj-47	672	26	proteins	protein	NOUN
ddj-47	672	27	together	together	ADV
ddj-47	672	28	after	after	ADP
ddj-47	672	29	which	which	PRON
ddj-47	672	30	a	a	DET
ddj-47	672	31	recombination	recombination	NOUN
ddj-47	672	32	process	process	NOUN
ddj-47	672	33	the	the	DET
ddj-47	672	34	hydrogen	hydrogen	NOUN
ddj-47	672	35	bond	bond	NOUN
ddj-47	672	36	connecting	connect	VERB
ddj-47	672	37	two	two	NUM
ddj-47	672	38	water	water	NOUN
ddj-47	672	39	molecules	molecule	NOUN
ddj-47	672	40	would	would	AUX
ddj-47	672	41	transform	transform	VERB
ddj-47	672	42	the	the	DET
ddj-47	672	43	bond	bond	NOUN
ddj-47	672	44	to	to	ADP
ddj-47	672	45	hydrogen	hydrogen	NOUN
ddj-47	672	46	bonds	bond	NOUN
ddj-47	672	47	of	of	ADP
ddj-47	672	48	o	o	NOUN
ddj-47	673	1	=	=	X
ddj-47	673	2	:	:	PUNCT
ddj-47	673	3	s	s	X
ddj-47	673	4	with	with	ADP
ddj-47	673	5	water	water	NOUN
ddj-47	673	6	molecules	molecule	NOUN
ddj-47	673	7	.	.	PUNCT
ddj-47	674	1	4	4	X
ddj-47	674	2	.	.	X
ddj-47	674	3	the	the	DET
ddj-47	674	4	phase	phase	NOUN
ddj-47	674	5	transition	transition	NOUN
ddj-47	674	6	increasing	increase	VERB
ddj-47	674	7	~	~	PUNCT
ddj-47	674	8	would	would	AUX
ddj-47	674	9	allow	allow	VERB
ddj-47	674	10	hydrophobic	hydrophobic	NOUN
ddj-47	674	11	amino	amino	NOUN
ddj-47	674	12	-	-	PUNCT
ddj-47	674	13	acids	acid	NOUN
ddj-47	674	14	to	to	PART
ddj-47	674	15	increase	increase	VERB
ddj-47	674	16	their	their	PRON
ddj-47	674	17	distance	distance	NOUN
ddj-47	674	18	from	from	ADP
ddj-47	674	19	water	water	NOUN
ddj-47	674	20	molecules	molecule	NOUN
ddj-47	674	21	in	in	ADP
ddj-47	674	22	a	a	DET
ddj-47	674	23	controlled	control	VERB
ddj-47	674	24	manner	manner	NOUN
ddj-47	674	25	.	.	PUNCT
ddj-47	675	1	this	this	PRON
ddj-47	675	2	could	could	AUX
ddj-47	675	3	be	be	AUX
ddj-47	675	4	essential	essential	ADJ
ddj-47	675	5	for	for	ADP
ddj-47	675	6	folding	fold	VERB
ddj-47	675	7	and	and	CCONJ
ddj-47	675	8	make	make	VERB
ddj-47	675	9	possible	possible	ADJ
ddj-47	675	10	the	the	DET
ddj-47	675	11	formation	formation	NOUN
ddj-47	675	12	of	of	ADP
ddj-47	675	13	pockets	pocket	NOUN
ddj-47	675	14	connected	connect	VERB
ddj-47	675	15	by	by	ADP
ddj-47	675	16	flux	flux	NOUN
ddj-47	675	17	tubes	tube	NOUN
ddj-47	675	18	of	of	ADP
ddj-47	675	19	large	large	NOUN
ddj-47	675	20	~	~	PUNCT
ddj-47	675	21	to	to	PART
ddj-47	675	22	water	water	VERB
ddj-47	675	23	.	.	PUNCT
ddj-47	676	1	in	in	ADP
ddj-47	676	2	quantum	quantum	NOUN
ddj-47	676	3	models	model	NOUN
ddj-47	676	4	for	for	ADP
ddj-47	676	5	evolution	evolution	NOUN
ddj-47	676	6	of	of	ADP
ddj-47	676	7	consciousness	consciousness	NOUN
ddj-47	676	8	these	these	DET
ddj-47	676	9	pockets	pocket	NOUN
ddj-47	676	10	are	be	AUX
ddj-47	676	11	believed	believe	VERB
ddj-47	676	12	to	to	PART
ddj-47	676	13	play	play	VERB
ddj-47	676	14	a	a	DET
ddj-47	676	15	prominent	prominent	ADJ
ddj-47	676	16	role	role	NOUN
ddj-47	676	17	.	.	PUNCT
ddj-47	677	1	molecular	molecular	ADJ
ddj-47	677	2	sex	sex	NOUN
ddj-47	677	3	in	in	ADP
ddj-47	677	4	this	this	DET
ddj-47	677	5	sense	sense	NOUN
ddj-47	677	6	would	would	AUX
ddj-47	677	7	mean	mean	VERB
ddj-47	677	8	a	a	DET
ddj-47	677	9	correlation	correlation	NOUN
ddj-47	677	10	tending	tend	VERB
ddj-47	677	11	to	to	PART
ddj-47	677	12	keep	keep	VERB
ddj-47	677	13	partners	partner	NOUN
ddj-47	677	14	at	at	ADP
ddj-47	677	15	large	large	ADJ
ddj-47	677	16	distance	distance	NOUN
ddj-47	677	17	except	except	SCONJ
ddj-47	677	18	when	when	SCONJ
ddj-47	677	19	~	~	PUNCT
ddj-47	677	20	reducing	reduce	VERB
ddj-47	677	21	phase	phase	NOUN
ddj-47	677	22	transition	transition	NOUN
ddj-47	677	23	occurs	occur	VERB
ddj-47	677	24	.	.	PUNCT
ddj-47	678	1	3.3.5	3.3.5	NUM
ddj-47	678	2	evolution	evolution	NOUN
ddj-47	678	3	and	and	CCONJ
ddj-47	678	4	amino	amino	NOUN
ddj-47	678	5	-	-	PUNCT
ddj-47	678	6	acid	acid	NOUN
ddj-47	678	7	pairings	pairing	NOUN
ddj-47	678	8	the	the	DET
ddj-47	678	9	evolution	evolution	NOUN
ddj-47	678	10	at	at	ADP
ddj-47	678	11	the	the	DET
ddj-47	678	12	molecular	molecular	ADJ
ddj-47	678	13	level	level	NOUN
ddj-47	678	14	corresponds	correspond	VERB
ddj-47	678	15	to	to	ADP
ddj-47	678	16	the	the	DET
ddj-47	678	17	emergence	emergence	NOUN
ddj-47	678	18	of	of	ADP
ddj-47	678	19	increasingly	increasingly	ADV
ddj-47	678	20	complex	complex	ADJ
ddj-47	678	21	molecules	molecule	NOUN
ddj-47	678	22	using	use	VERB
ddj-47	678	23	as	as	ADP
ddj-47	678	24	basic	basic	ADJ
ddj-47	678	25	building	building	NOUN
ddj-47	678	26	blocks	block	NOUN
ddj-47	678	27	amino	amino	ADJ
ddj-47	678	28	-	-	PUNCT
ddj-47	678	29	acid	acid	NOUN
ddj-47	678	30	chains	chain	NOUN
ddj-47	678	31	and	and	CCONJ
ddj-47	678	32	non	non	ADJ
ddj-47	678	33	-	-	ADJ
ddj-47	678	34	translated	translated	ADJ
ddj-47	678	35	residues	residue	NOUN
ddj-47	678	36	attached	attach	VERB
ddj-47	678	37	to	to	ADP
ddj-47	678	38	them	they	PRON
ddj-47	678	39	in	in	ADP
ddj-47	678	40	the	the	DET
ddj-47	678	41	post	post	ADJ
ddj-47	678	42	-	-	ADJ
ddj-47	678	43	translational	translational	ADJ
ddj-47	678	44	processing	processing	NOUN
ddj-47	678	45	of	of	ADP
ddj-47	678	46	the	the	DET
ddj-47	678	47	amino	amino	NOUN
ddj-47	678	48	-	-	PUNCT
ddj-47	678	49	acid	acid	NOUN
ddj-47	678	50	chains	chain	NOUN
ddj-47	678	51	.	.	PUNCT
ddj-47	679	1	also	also	ADV
ddj-47	679	2	increasingly	increasingly	ADV
ddj-47	679	3	complex	complex	ADJ
ddj-47	679	4	reaction	reaction	NOUN
ddj-47	679	5	paths	path	NOUN
ddj-47	679	6	emerge	emerge	VERB
ddj-47	679	7	.	.	PUNCT
ddj-47	680	1	molecular	molecular	ADJ
ddj-47	680	2	survival	survival	NOUN
ddj-47	680	3	and	and	CCONJ
ddj-47	680	4	the	the	DET
ddj-47	680	5	competition	competition	NOUN
ddj-47	680	6	for	for	ADP
ddj-47	680	7	the	the	DET
ddj-47	680	8	metabolic	metabolic	NOUN
ddj-47	680	9	resources	resource	NOUN
ddj-47	680	10	at	at	ADP
ddj-47	680	11	molecular	molecular	ADJ
ddj-47	680	12	level	level	NOUN
ddj-47	680	13	could	could	AUX
ddj-47	680	14	be	be	AUX
ddj-47	680	15	seen	see	VERB
ddj-47	680	16	as	as	ADP
ddj-47	680	17	the	the	DET
ddj-47	680	18	basic	basic	ADJ
ddj-47	680	19	driving	driving	NOUN
ddj-47	680	20	force	force	NOUN
ddj-47	680	21	of	of	ADP
ddj-47	680	22	this	this	DET
ddj-47	680	23	evolution	evolution	NOUN
ddj-47	680	24	.	.	PUNCT
ddj-47	681	1	typically	typically	ADV
ddj-47	681	2	,	,	PUNCT
ddj-47	681	3	in	in	ADP
ddj-47	681	4	the	the	DET
ddj-47	681	5	original	original	ADJ
ddj-47	681	6	situation	situation	NOUN
ddj-47	681	7	the	the	DET
ddj-47	681	8	enzymes	enzyme	NOUN
ddj-47	681	9	would	would	AUX
ddj-47	681	10	have	have	AUX
ddj-47	681	11	received	receive	VERB
ddj-47	681	12	the	the	DET
ddj-47	681	13	substrate	substrate	NOUN
ddj-47	681	14	molecules	molecule	NOUN
ddj-47	681	15	from	from	ADP
ddj-47	681	16	the	the	DET
ddj-47	681	17	environment	environment	NOUN
ddj-47	681	18	but	but	CCONJ
ddj-47	681	19	sooner	soon	ADV
ddj-47	681	20	or	or	CCONJ
ddj-47	681	21	later	later	ADV
ddj-47	681	22	this	this	PRON
ddj-47	681	23	would	would	AUX
ddj-47	681	24	have	have	AUX
ddj-47	681	25	become	become	VERB
ddj-47	681	26	difficult	difficult	ADJ
ddj-47	681	27	.	.	PUNCT
ddj-47	682	1	the	the	DET
ddj-47	682	2	solution	solution	NOUN
ddj-47	682	3	would	would	AUX
ddj-47	682	4	have	have	AUX
ddj-47	682	5	been	be	AUX
ddj-47	682	6	a	a	DET
ddj-47	682	7	synthesis	synthesis	NOUN
ddj-47	682	8	of	of	ADP
ddj-47	682	9	the	the	DET
ddj-47	682	10	substrate	substrate	NOUN
ddj-47	682	11	from	from	ADP
ddj-47	682	12	simpler	simple	ADJ
ddj-47	682	13	ingredients	ingredient	NOUN
ddj-47	682	14	by	by	ADP
ddj-47	682	15	starting	start	VERB
ddj-47	682	16	from	from	ADP
ddj-47	682	17	some	some	DET
ddj-47	682	18	precursor	precursor	NOUN
ddj-47	682	19	.	.	PUNCT
ddj-47	683	1	if	if	SCONJ
ddj-47	683	2	molecules	molecule	NOUN
ddj-47	683	3	(	(	PUNCT
ddj-47	683	4	with	with	ADP
ddj-47	683	5	magnetic	magnetic	ADJ
ddj-47	683	6	bodies	body	NOUN
ddj-47	683	7	included	include	VERB
ddj-47	683	8	)	)	PUNCT
ddj-47	683	9	are	be	AUX
ddj-47	683	10	conscious	conscious	ADJ
ddj-47	683	11	entities	entity	NOUN
ddj-47	683	12	able	able	ADJ
ddj-47	683	13	to	to	PART
ddj-47	683	14	direct	direct	VERB
ddj-47	683	15	attention	attention	NOUN
ddj-47	683	16	,	,	PUNCT
ddj-47	683	17	one	one	PRON
ddj-47	683	18	can	can	AUX
ddj-47	683	19	imagine	imagine	VERB
ddj-47	683	20	that	that	SCONJ
ddj-47	683	21	magnetic	magnetic	ADJ
ddj-47	683	22	body	body	NOUN
ddj-47	683	23	controlling	control	VERB
ddj-47	683	24	them	they	PRON
ddj-47	683	25	with	with	ADP
ddj-47	683	26	the	the	DET
ddj-47	683	27	mediation	mediation	NOUN
ddj-47	683	28	of	of	ADP
ddj-47	683	29	genome	genome	NOUN
ddj-47	683	30	and	and	CCONJ
ddj-47	683	31	able	able	ADJ
ddj-47	683	32	to	to	PART
ddj-47	683	33	actively	actively	ADV
ddj-47	683	34	modify	modify	VERB
ddj-47	683	35	it	it	PRON
ddj-47	683	36	,	,	PUNCT
ddj-47	683	37	could	could	AUX
ddj-47	683	38	help	help	VERB
ddj-47	683	39	through	through	ADP
ddj-47	683	40	modifications	modification	NOUN
ddj-47	683	41	of	of	ADP
ddj-47	683	42	the	the	DET
ddj-47	683	43	genome	genome	NOUN
ddj-47	683	44	to	to	PART
ddj-47	683	45	create	create	VERB
ddj-47	683	46	to	to	ADP
ddj-47	683	47	the	the	DET
ddj-47	683	48	catalyst	catalyst	NOUN
ddj-47	683	49	a	a	DET
ddj-47	683	50	binding	bind	VERB
ddj-47	683	51	site	site	NOUN
ddj-47	683	52	able	able	ADJ
ddj-47	683	53	to	to	PART
ddj-47	683	54	bind	bind	VERB
ddj-47	683	55	the	the	DET
ddj-47	683	56	precursor	precursor	NOUN
ddj-47	683	57	.	.	PUNCT
ddj-47	684	1	immune	immune	ADJ
ddj-47	684	2	system	system	NOUN
ddj-47	684	3	is	be	AUX
ddj-47	684	4	doing	do	VERB
ddj-47	684	5	this	this	PRON
ddj-47	684	6	very	very	ADV
ddj-47	684	7	intensively	intensively	ADV
ddj-47	684	8	.	.	PUNCT
ddj-47	685	1	if	if	SCONJ
ddj-47	685	2	the	the	DET
ddj-47	685	3	enzyme	enzyme	NOUN
ddj-47	685	4	binding	bind	VERB
ddj-47	685	5	the	the	DET
ddj-47	685	6	precursor	precursor	NOUN
ddj-47	685	7	already	already	ADV
ddj-47	685	8	exists	exist	VERB
ddj-47	685	9	,	,	PUNCT
ddj-47	685	10	a	a	DET
ddj-47	685	11	combination	combination	NOUN
ddj-47	685	12	of	of	ADP
ddj-47	685	13	genes	gene	NOUN
ddj-47	685	14	coding	code	VERB
ddj-47	685	15	for	for	ADP
ddj-47	685	16	the	the	DET
ddj-47	685	17	enzyme	enzyme	NOUN
ddj-47	685	18	and	and	CCONJ
ddj-47	685	19	the	the	DET
ddj-47	685	20	enzyme	enzyme	NOUN
ddj-47	685	21	having	have	VERB
ddj-47	685	22	the	the	DET
ddj-47	685	23	metabolites	metabolite	NOUN
ddj-47	685	24	as	as	SCONJ
ddj-47	685	25	ligands	ligand	NOUN
ddj-47	685	26	could	could	AUX
ddj-47	685	27	allow	allow	VERB
ddj-47	685	28	to	to	PART
ddj-47	685	29	achieve	achieve	VERB
ddj-47	685	30	this	this	PRON
ddj-47	685	31	.	.	PUNCT
ddj-47	686	1	all	all	DET
ddj-47	686	2	this	this	PRON
ddj-47	686	3	would	would	AUX
ddj-47	686	4	reduce	reduce	VERB
ddj-47	686	5	to	to	ADP
ddj-47	686	6	the	the	DET
ddj-47	686	7	motor	motor	NOUN
ddj-47	686	8	activities	activity	NOUN
ddj-47	686	9	of	of	ADP
ddj-47	686	10	magnetic	magnetic	ADJ
ddj-47	686	11	body	body	NOUN
ddj-47	686	12	,	,	PUNCT
ddj-47	686	13	in	in	ADP
ddj-47	686	14	particular	particular	ADJ
ddj-47	686	15	reconnection	reconnection	NOUN
ddj-47	686	16	of	of	ADP
ddj-47	686	17	flux	flux	PROPN
ddj-47	686	18	tubes	tubes	PROPN
ddj-47	686	19	,	,	PUNCT
ddj-47	686	20	a	a	DET
ddj-47	686	21	kind	kind	NOUN
ddj-47	686	22	of	of	ADP
ddj-47	686	23	dance	dance	NOUN
ddj-47	686	24	of	of	ADP
ddj-47	686	25	shiva	shiva	NOUN
ddj-47	686	26	.	.	PUNCT
ddj-47	687	1	genome	genome	NOUN
ddj-47	687	2	would	would	AUX
ddj-47	687	3	not	not	PART
ddj-47	687	4	be	be	AUX
ddj-47	687	5	anymore	anymore	ADV
ddj-47	687	6	a	a	DET
ddj-47	687	7	sequence	sequence	NOUN
ddj-47	687	8	of	of	ADP
ddj-47	687	9	dna	dna	NOUN
ddj-47	687	10	developing	develop	VERB
ddj-47	687	11	through	through	ADP
ddj-47	687	12	random	random	ADJ
ddj-47	687	13	mutations	mutation	NOUN
ddj-47	687	14	under	under	ADP
ddj-47	687	15	selection	selection	NOUN
ddj-47	687	16	pressures	pressure	NOUN
ddj-47	687	17	.	.	PUNCT
ddj-47	688	1	in	in	ADP
ddj-47	688	2	this	this	DET
ddj-47	688	3	framework	framework	NOUN
ddj-47	688	4	amino	amino	NOUN
ddj-47	688	5	-	-	PUNCT
ddj-47	688	6	acids	acid	NOUN
ddj-47	688	7	would	would	AUX
ddj-47	688	8	have	have	AUX
ddj-47	688	9	appeared	appear	VERB
ddj-47	688	10	before	before	ADP
ddj-47	688	11	their	their	PRON
ddj-47	688	12	precursors	precursor	NOUN
ddj-47	688	13	and	and	CCONJ
ddj-47	688	14	possessed	possess	VERB
ddj-47	688	15	some	some	DET
ddj-47	688	16	function	function	NOUN
ddj-47	688	17	in	in	ADP
ddj-47	688	18	rna	rna	NOUN
ddj-47	688	19	world	world	NOUN
ddj-47	688	20	,	,	PUNCT
ddj-47	688	21	say	say	VERB
ddj-47	688	22	the	the	DET
ddj-47	688	23	catalysis	catalysis	NOUN
ddj-47	688	24	of	of	ADP
ddj-47	688	25	join	join	NOUN
ddj-47	688	26	of	of	ADP
ddj-47	688	27	rna2	rna2	NOUN
ddj-47	688	28	dinucleotides	dinucleotide	VERB
ddj-47	688	29	to	to	ADP
ddj-47	688	30	the	the	DET
ddj-47	688	31	increasing	increase	VERB
ddj-47	688	32	chain	chain	NOUN
ddj-47	688	33	as	as	SCONJ
ddj-47	688	34	proposed	propose	VERB
ddj-47	688	35	in	in	ADP
ddj-47	688	36	[	[	X
ddj-47	688	37	16	16	NUM
ddj-47	688	38	]	]	PUNCT
ddj-47	688	39	.	.	PUNCT
ddj-47	689	1	competition	competition	NOUN
ddj-47	689	2	might	might	AUX
ddj-47	689	3	have	have	AUX
ddj-47	689	4	led	lead	VERB
ddj-47	689	5	to	to	ADP
ddj-47	689	6	a	a	DET
ddj-47	689	7	situation	situation	NOUN
ddj-47	689	8	in	in	ADP
ddj-47	689	9	which	which	PRON
ddj-47	689	10	rna2	rna2	NOUN
ddj-47	689	11	learned	learn	VERB
ddj-47	689	12	to	to	PART
ddj-47	689	13	catalyze	catalyze	VERB
ddj-47	689	14	selectively	selectively	ADV
ddj-47	689	15	the	the	DET
ddj-47	689	16	generation	generation	NOUN
ddj-47	689	17	of	of	ADP
ddj-47	689	18	amino	amino	NOUN
ddj-47	689	19	-	-	PUNCT
ddj-47	689	20	acids	acid	NOUN
ddj-47	689	21	from	from	ADP
ddj-47	689	22	much	much	ADV
ddj-47	689	23	simpler	simple	ADJ
ddj-47	689	24	precursors	precursor	NOUN
ddj-47	689	25	(	(	PUNCT
ddj-47	689	26	three	three	NUM
ddj-47	689	27	of	of	ADP
ddj-47	689	28	the	the	DET
ddj-47	689	29	proposed	propose	VERB
ddj-47	689	30	precursors	precursor	NOUN
ddj-47	689	31	contain	contain	VERB
ddj-47	689	32	only	only	ADV
ddj-47	689	33	c	c	NOUN
ddj-47	689	34	,	,	PUNCT
ddj-47	689	35	=	=	SYM
ddj-47	689	36	o	o	NOUN
ddj-47	689	37	,	,	PUNCT
ddj-47	689	38	and	and	CCONJ
ddj-47	689	39	o−	o−	PROPN
ddj-47	689	40	)	)	PUNCT
ddj-47	689	41	giving	give	VERB
ddj-47	689	42	rise	rise	NOUN
ddj-47	689	43	to	to	ADP
ddj-47	689	44	positive	positive	ADJ
ddj-47	689	45	feedback	feedback	NOUN
ddj-47	689	46	implying	imply	VERB
ddj-47	689	47	an	an	DET
ddj-47	689	48	exponential	exponential	ADJ
ddj-47	689	49	amplification	amplification	NOUN
ddj-47	689	50	of	of	ADP
ddj-47	689	51	rna	rna	NOUN
ddj-47	689	52	and	and	CCONJ
ddj-47	689	53	amino	amino	NOUN
ddj-47	689	54	-	-	PUNCT
ddj-47	689	55	acid	acid	NOUN
ddj-47	689	56	populations	population	NOUN
ddj-47	689	57	.	.	PUNCT
ddj-47	690	1	the	the	DET
ddj-47	690	2	reduced	reduce	VERB
ddj-47	690	3	genetic	genetic	ADJ
ddj-47	690	4	code	code	NOUN
ddj-47	690	5	would	would	AUX
ddj-47	690	6	have	have	AUX
ddj-47	690	7	been	be	AUX
ddj-47	690	8	present	present	ADJ
ddj-47	690	9	at	at	ADP
ddj-47	690	10	two	two	NUM
ddj-47	690	11	levels	level	NOUN
ddj-47	690	12	.	.	PUNCT
ddj-47	691	1	the	the	DET
ddj-47	691	2	reader	reader	NOUN
ddj-47	691	3	can	can	AUX
ddj-47	691	4	decide	decide	VERB
ddj-47	691	5	whether	whether	SCONJ
ddj-47	691	6	this	this	PRON
ddj-47	691	7	is	be	AUX
ddj-47	691	8	a	a	DET
ddj-47	691	9	shortcoming	shortcoming	NOUN
ddj-47	691	10	of	of	ADP
ddj-47	691	11	the	the	DET
ddj-47	691	12	model	model	NOUN
ddj-47	691	13	or	or	CCONJ
ddj-47	691	14	a	a	DET
ddj-47	691	15	fundamental	fundamental	ADJ
ddj-47	691	16	biochemical	biochemical	ADJ
ddj-47	691	17	duality	duality	NOUN
ddj-47	691	18	.	.	PUNCT
ddj-47	692	1	can	can	AUX
ddj-47	692	2	one	one	PRON
ddj-47	692	3	make	make	VERB
ddj-47	692	4	any	any	DET
ddj-47	692	5	clear	clear	ADJ
ddj-47	692	6	cut	cut	VERB
ddj-47	692	7	predictions	prediction	NOUN
ddj-47	692	8	about	about	ADP
ddj-47	692	9	preferred	preferred	ADJ
ddj-47	692	10	mutations	mutation	NOUN
ddj-47	692	11	?	?	PUNCT
ddj-47	693	1	1	1	X
ddj-47	693	2	.	.	X
ddj-47	693	3	in	in	ADP
ddj-47	693	4	tgd	tgd	PROPN
ddj-47	693	5	framework	framework	NOUN
ddj-47	693	6	mutations	mutation	NOUN
ddj-47	693	7	are	be	AUX
ddj-47	693	8	not	not	PART
ddj-47	693	9	expected	expect	VERB
ddj-47	693	10	to	to	PART
ddj-47	693	11	be	be	AUX
ddj-47	693	12	always	always	ADV
ddj-47	693	13	random	random	ADJ
ddj-47	693	14	point	point	NOUN
ddj-47	693	15	mutations	mutation	NOUN
ddj-47	693	16	but	but	CCONJ
ddj-47	693	17	could	could	AUX
ddj-47	693	18	be	be	AUX
ddj-47	693	19	even	even	ADV
ddj-47	693	20	a	a	DET
ddj-47	693	21	result	result	NOUN
ddj-47	693	22	of	of	ADP
ddj-47	693	23	a	a	DET
ddj-47	693	24	purposeful	purposeful	ADJ
ddj-47	693	25	action	action	NOUN
ddj-47	693	26	of	of	ADP
ddj-47	693	27	the	the	DET
ddj-47	693	28	magnetic	magnetic	ADJ
ddj-47	693	29	body	body	NOUN
ddj-47	693	30	.	.	PUNCT
ddj-47	694	1	chemical	chemical	NOUN
ddj-47	694	2	similarity	similarity	NOUN
ddj-47	694	3	is	be	AUX
ddj-47	694	4	expected	expect	VERB
ddj-47	694	5	to	to	PART
ddj-47	694	6	be	be	AUX
ddj-47	694	7	conserved	conserve	VERB
ddj-47	694	8	in	in	ADP
ddj-47	694	9	good	good	ADJ
ddj-47	694	10	mutations	mutation	NOUN
ddj-47	694	11	.	.	PUNCT
ddj-47	695	1	this	this	PRON
ddj-47	695	2	is	be	AUX
ddj-47	695	3	known	know	VERB
ddj-47	695	4	to	to	PART
ddj-47	695	5	be	be	AUX
ddj-47	695	6	the	the	DET
ddj-47	695	7	case	case	NOUN
ddj-47	695	8	.	.	PUNCT
ddj-47	696	1	for	for	ADP
ddj-47	696	2	y	y	PROPN
ddj-47	696	3	=	=	SYM
ddj-47	696	4	z	z	PROPN
ddj-47	696	5	or	or	CCONJ
ddj-47	696	6	y	y	PROPN
ddj-47	696	7	=	=	PUNCT
ddj-47	696	8	zc	zc	NOUN
ddj-47	696	9	pairing	pair	VERB
ddj-47	696	10	the	the	DET
ddj-47	696	11	simplest	simple	ADJ
ddj-47	696	12	mutations	mutation	NOUN
ddj-47	696	13	should	should	AUX
ddj-47	696	14	leave	leave	VERB
ddj-47	696	15	both	both	DET
ddj-47	696	16	y	y	PROPN
ddj-47	696	17	and	and	CCONJ
ddj-47	696	18	z	z	NOUN
ddj-47	696	19	invariant	invariant	ADJ
ddj-47	696	20	so	so	SCONJ
ddj-47	696	21	that	that	SCONJ
ddj-47	696	22	only	only	ADV
ddj-47	696	23	the	the	DET
ddj-47	696	24	first	first	ADJ
ddj-47	696	25	nucleotide	nucleotide	NOUN
ddj-47	696	26	x	x	PUNCT
ddj-47	696	27	can	can	AUX
ddj-47	696	28	suffer	suffer	VERB
ddj-47	696	29	a	a	DET
ddj-47	696	30	mutation	mutation	NOUN
ddj-47	696	31	.	.	PUNCT
ddj-47	697	1	2	2	X
ddj-47	697	2	.	.	X
ddj-47	697	3	also	also	ADV
ddj-47	697	4	bi	bi	ADJ
ddj-47	697	5	-	-	ADJ
ddj-47	697	6	local	local	ADJ
ddj-47	697	7	mutations	mutation	NOUN
ddj-47	697	8	of	of	ADP
ddj-47	697	9	the	the	DET
ddj-47	697	10	second	second	ADJ
ddj-47	697	11	and	and	CCONJ
ddj-47	697	12	third	third	ADJ
ddj-47	697	13	nucleotides	nucleotide	NOUN
ddj-47	697	14	of	of	ADP
ddj-47	697	15	codons	codon	NOUN
ddj-47	697	16	forming	form	VERB
ddj-47	697	17	y	y	PROPN
ddj-47	697	18	=	=	PUNCT
ddj-47	697	19	z	z	PROPN
ddj-47	697	20	(	(	PUNCT
ddj-47	697	21	y	y	NOUN
ddj-47	697	22	=	=	PUNCT
ddj-47	697	23	zc	zc	PROPN
ddj-47	697	24	)	)	PUNCT
ddj-47	697	25	pair	pair	NOUN
ddj-47	697	26	and	and	CCONJ
ddj-47	697	27	conserving	conserve	VERB
ddj-47	697	28	this	this	DET
ddj-47	697	29	property	property	NOUN
ddj-47	697	30	might	might	AUX
ddj-47	697	31	occur	occur	VERB
ddj-47	697	32	and	and	CCONJ
ddj-47	697	33	could	could	AUX
ddj-47	697	34	be	be	AUX
ddj-47	697	35	crucial	crucial	ADJ
ddj-47	697	36	for	for	ADP
ddj-47	697	37	the	the	DET
ddj-47	697	38	coherence	coherence	NOUN
ddj-47	697	39	of	of	ADP
ddj-47	697	40	the	the	DET
ddj-47	697	41	organisms	organism	NOUN
ddj-47	697	42	.	.	PUNCT
ddj-47	698	1	as	as	SCONJ
ddj-47	698	2	found	find	VERB
ddj-47	698	3	,	,	PUNCT
ddj-47	698	4	the	the	DET
ddj-47	698	5	formation	formation	NOUN
ddj-47	698	6	of	of	ADP
ddj-47	698	7	flux	flux	NOUN
ddj-47	698	8	tube	tube	NOUN
ddj-47	698	9	between	between	ADP
ddj-47	698	10	amino	amino	NOUN
ddj-47	698	11	-	-	PUNCT
ddj-47	698	12	acids	acid	NOUN
ddj-47	698	13	a1	a1	NOUN
ddj-47	698	14	and	and	CCONJ
ddj-47	698	15	a2	a2	PROPN
ddj-47	698	16	induces	induce	VERB
ddj-47	698	17	a	a	DET
ddj-47	698	18	flux	flux	NOUN
ddj-47	698	19	tube	tube	NOUN
ddj-47	698	20	between	between	ADP
ddj-47	698	21	nucleotides	nucleotide	NOUN
ddj-47	698	22	y	y	PROPN
ddj-47	698	23	and	and	CCONJ
ddj-47	698	24	z	z	PROPN
ddj-47	698	25	at	at	ADP
ddj-47	698	26	the	the	DET
ddj-47	698	27	corresponding	corresponding	ADJ
ddj-47	698	28	genes	gene	NOUN
ddj-47	698	29	.	.	PUNCT
ddj-47	699	1	this	this	DET
ddj-47	699	2	flux	flux	NOUN
ddj-47	699	3	tube	tube	NOUN
ddj-47	699	4	could	could	AUX
ddj-47	699	5	force	force	VERB
ddj-47	699	6	the	the	DET
ddj-47	699	7	possibly	possibly	ADV
ddj-47	699	8	intentional	intentional	ADJ
ddj-47	699	9	mutations	mutation	NOUN
ddj-47	699	10	to	to	PART
ddj-47	699	11	occur	occur	VERB
ddj-47	699	12	as	as	ADP
ddj-47	699	13	simultaneous	simultaneous	ADJ
ddj-47	699	14	mutations	mutation	NOUN
ddj-47	699	15	of	of	ADP
ddj-47	699	16	the	the	DET
ddj-47	699	17	two	two	NUM
ddj-47	699	18	genes	gene	NOUN
ddj-47	699	19	so	so	SCONJ
ddj-47	699	20	that	that	SCONJ
ddj-47	699	21	y	y	PRON
ddj-47	699	22	=	=	PUNCT
ddj-47	699	23	z	z	PROPN
ddj-47	699	24	(	(	PUNCT
ddj-47	699	25	y	y	NOUN
ddj-47	699	26	=	=	PUNCT
ddj-47	699	27	zc	zc	X
ddj-47	699	28	)	)	PUNCT
ddj-47	699	29	condition	condition	NOUN
ddj-47	699	30	remains	remain	VERB
ddj-47	699	31	true	true	ADJ
ddj-47	699	32	for	for	ADP
ddj-47	699	33	amino	amino	NOUN
ddj-47	699	34	-	-	PUNCT
ddj-47	699	35	acids	acid	NOUN
ddj-47	699	36	connected	connect	VERB
ddj-47	699	37	by	by	ADP
ddj-47	699	38	flux	flux	NOUN
ddj-47	699	39	tube	tube	NOUN
ddj-47	699	40	.	.	PUNCT
ddj-47	700	1	3	3	X
ddj-47	700	2	.	.	X
ddj-47	700	3	a	a	DET
ddj-47	700	4	new	new	ADJ
ddj-47	700	5	element	element	NOUN
ddj-47	700	6	is	be	AUX
ddj-47	700	7	that	that	PRON
ddj-47	700	8	isospin	isospin	VERB
ddj-47	700	9	rotation	rotation	NOUN
ddj-47	700	10	of	of	ADP
ddj-47	700	11	z	z	PROPN
ddj-47	700	12	nucleotide	nucleotide	NOUN
ddj-47	700	13	(	(	PUNCT
ddj-47	700	14	a←	a←	PROPN
ddj-47	700	15	g	g	PROPN
ddj-47	700	16	,	,	PUNCT
ddj-47	700	17	t	t	PROPN
ddj-47	700	18	←	←	PROPN
ddj-47	700	19	c	c	PROPN
ddj-47	700	20	)	)	PUNCT
ddj-47	700	21	which	which	PRON
ddj-47	700	22	does	do	AUX
ddj-47	700	23	not	not	PART
ddj-47	700	24	affect	affect	VERB
ddj-47	700	25	amino	amino	NOUN
ddj-47	700	26	-	-	PUNCT
ddj-47	700	27	acid	acid	NOUN
ddj-47	700	28	,	,	PUNCT
ddj-47	700	29	affects	affect	VERB
ddj-47	700	30	its	its	PRON
ddj-47	700	31	folding	folding	NOUN
ddj-47	700	32	so	so	SCONJ
ddj-47	700	33	that	that	SCONJ
ddj-47	700	34	same	same	ADJ
ddj-47	700	35	protein	protein	NOUN
ddj-47	700	36	might	might	AUX
ddj-47	700	37	have	have	VERB
ddj-47	700	38	different	different	ADJ
ddj-47	700	39	folding	folding	NOUN
ddj-47	700	40	patterns	pattern	NOUN
ddj-47	700	41	and	and	CCONJ
ddj-47	700	42	different	different	ADJ
ddj-47	700	43	catalytic	catalytic	ADJ
ddj-47	700	44	properties	property	NOUN
ddj-47	700	45	corresponding	correspond	VERB
ddj-47	700	46	to	to	ADP
ddj-47	700	47	different	different	ADJ
ddj-47	700	48	codons	codon	NOUN
ddj-47	700	49	coding	code	VERB
ddj-47	700	50	for	for	ADP
ddj-47	700	51	it	it	PRON
ddj-47	700	52	.	.	PUNCT
ddj-47	701	1	this	this	PRON
ddj-47	701	2	would	would	AUX
ddj-47	701	3	mean	mean	VERB
ddj-47	701	4	a	a	DET
ddj-47	701	5	breaking	breaking	NOUN
ddj-47	701	6	of	of	ADP
ddj-47	701	7	the	the	DET
ddj-47	701	8	central	central	ADJ
ddj-47	701	9	dogma	dogma	NOUN
ddj-47	701	10	a	a	DET
ddj-47	701	11	the	the	DET
ddj-47	701	12	level	level	NOUN
ddj-47	701	13	of	of	ADP
ddj-47	701	14	magnetic	magnetic	ADJ
ddj-47	701	15	body	body	NOUN
ddj-47	701	16	.	.	PUNCT
ddj-47	702	1	some	some	DET
ddj-47	702	2	examples	example	NOUN
ddj-47	702	3	are	be	AUX
ddj-47	702	4	in	in	ADP
ddj-47	702	5	order	order	NOUN
ddj-47	702	6	.	.	PUNCT
ddj-47	703	1	the	the	DET
ddj-47	703	2	mutations	mutation	NOUN
ddj-47	703	3	ala	ala	PROPN
ddj-47	703	4	/	/	SYM
ddj-47	703	5	ser	ser	PROPN
ddj-47	703	6	,	,	PUNCT
ddj-47	703	7	ser	ser	NOUN
ddj-47	703	8	/	/	SYM
ddj-47	703	9	thr	thr	PROPN
ddj-47	703	10	,	,	PUNCT
ddj-47	703	11	ile	ile	PROPN
ddj-47	703	12	/	/	SYM
ddj-47	703	13	val	val	PROPN
ddj-47	703	14	/	/	SYM
ddj-47	703	15	leu	leu	PROPN
ddj-47	703	16	,	,	PUNCT
ddj-47	703	17	asp	asp	PROPN
ddj-47	703	18	/	/	SYM
ddj-47	703	19	glu	glu	NOUN
ddj-47	703	20	do	do	AUX
ddj-47	703	21	not	not	PART
ddj-47	703	22	change	change	VERB
ddj-47	703	23	y	y	PROPN
ddj-47	703	24	.	.	PUNCT
ddj-47	704	1	lys	lys	PROPN
ddj-47	704	2	/	/	SYM
ddj-47	704	3	arg	arg	NOUN
ddj-47	704	4	(	(	PUNCT
ddj-47	704	5	a	a	NOUN
ddj-47	704	6	/	/	SYM
ddj-47	704	7	g	g	NOUN
ddj-47	704	8	)	)	PUNCT
ddj-47	704	9	)	)	PUNCT
ddj-47	704	10	,	,	PUNCT
ddj-47	704	11	tyr	tyr	PROPN
ddj-47	704	12	/	/	SYM
ddj-47	704	13	phe	phe	PROPN
ddj-47	704	14	(	(	PUNCT
ddj-47	704	15	a	a	DET
ddj-47	704	16	/	/	SYM
ddj-47	704	17	u	u	NOUN
ddj-47	704	18	)	)	PUNCT
ddj-47	704	19	,	,	PUNCT
ddj-47	704	20	gly	gly	NOUN
ddj-47	704	21	/	/	SYM
ddj-47	704	22	ala	ala	PROPN
ddj-47	704	23	(	(	PUNCT
ddj-47	704	24	g	g	NOUN
ddj-47	704	25	/	/	SYM
ddj-47	704	26	c	c	NOUN
ddj-47	704	27	)	)	PUNCT
ddj-47	704	28	,	,	PUNCT
ddj-47	704	29	...	...	PUNCT
ddj-47	704	30	are	be	AUX
ddj-47	704	31	also	also	ADV
ddj-47	704	32	prevalent	prevalent	ADJ
ddj-47	704	33	and	and	CCONJ
ddj-47	704	34	one	one	PRON
ddj-47	704	35	might	might	AUX
ddj-47	704	36	hope	hope	VERB
ddj-47	704	37	that	that	SCONJ
ddj-47	704	38	they	they	PRON
ddj-47	704	39	correspond	correspond	VERB
ddj-47	704	40	to	to	ADP
ddj-47	704	41	binary	binary	ADJ
ddj-47	704	42	mutations	mutation	NOUN
ddj-47	704	43	in	in	ADP
ddj-47	704	44	some	some	DET
ddj-47	704	45	important	important	ADJ
ddj-47	704	46	cases	case	NOUN
ddj-47	704	47	.	.	PUNCT
ddj-47	705	1	issn	issn	PROPN
ddj-47	705	2	:	:	PUNCT
ddj-47	705	3	2159	2159	NUM
ddj-47	705	4	-	-	SYM
ddj-47	705	5	0465	0465	NUM
ddj-47	705	6	dna	dna	PROPN
ddj-47	705	7	decipher	decipher	PROPN
ddj-47	705	8	journal	journal	PROPN
ddj-47	705	9	june	june	PROPN
ddj-47	705	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	705	11	published	publish	VERB
ddj-47	705	12	by	by	ADP
ddj-47	705	13	quantumdream	quantumdream	PROPN
ddj-47	705	14	,	,	PUNCT
ddj-47	705	15	inc	inc	PROPN
ddj-47	705	16	.	.	PROPN
ddj-47	705	17	dna	dna	PROPN
ddj-47	705	18	decipher	decipher	PROPN
ddj-47	705	19	journal	journal	NOUN
ddj-47	706	1	|	|	ADV
ddj-47	706	2	may	may	AUX
ddj-47	706	3	2013	2013	NUM
ddj-47	706	4	|	|	ADV
ddj-47	706	5	volume	volume	NOUN
ddj-47	706	6	3	3	NUM
ddj-47	706	7	|	|	NOUN
ddj-47	706	8	issue	issue	VERB
ddj-47	706	9	1	1	NUM
ddj-47	706	10	|	|	ADV
ddj-47	706	11	pp	pp	ADJ
ddj-47	706	12	.	.	PUNCT
ddj-47	707	1	58	58	NUM
ddj-47	707	2	-	-	SYM
ddj-47	707	3	88	88	NUM
ddj-47	707	4	79	79	NUM
ddj-47	707	5	pitkänen	pitkänen	NOUN
ddj-47	707	6	,	,	PUNCT
ddj-47	707	7	m.	m.	NOUN
ddj-47	707	8	,	,	PUNCT
ddj-47	707	9	a	a	DET
ddj-47	707	10	model	model	NOUN
ddj-47	707	11	for	for	ADP
ddj-47	707	12	protein	protein	NOUN
ddj-47	707	13	folding	folding	NOUN
ddj-47	707	14	and	and	CCONJ
ddj-47	707	15	biocatalysis	biocatalysis	NOUN
ddj-47	707	16	4	4	NUM
ddj-47	707	17	.	.	X
ddj-47	707	18	folding	folding	NOUN
ddj-47	707	19	is	be	AUX
ddj-47	707	20	known	know	VERB
ddj-47	707	21	to	to	PART
ddj-47	707	22	be	be	AUX
ddj-47	707	23	more	more	ADV
ddj-47	707	24	conserved	conserved	ADJ
ddj-47	707	25	than	than	ADP
ddj-47	707	26	amino	amino	ADJ
ddj-47	707	27	-	-	PUNCT
ddj-47	707	28	acid	acid	NOUN
ddj-47	707	29	sequence	sequence	NOUN
ddj-47	707	30	[	[	X
ddj-47	707	31	13	13	NUM
ddj-47	707	32	]	]	PUNCT
ddj-47	707	33	.	.	PUNCT
ddj-47	708	1	since	since	SCONJ
ddj-47	708	2	folding	fold	VERB
ddj-47	708	3	is	be	AUX
ddj-47	708	4	a	a	DET
ddj-47	708	5	collective	collective	ADJ
ddj-47	708	6	property	property	NOUN
ddj-47	708	7	of	of	ADP
ddj-47	708	8	gene	gene	NOUN
ddj-47	708	9	,	,	PUNCT
ddj-47	708	10	local	local	ADJ
ddj-47	708	11	chemistry	chemistry	NOUN
ddj-47	708	12	might	might	AUX
ddj-47	708	13	not	not	PART
ddj-47	708	14	be	be	AUX
ddj-47	708	15	enough	enough	ADJ
ddj-47	708	16	and	and	CCONJ
ddj-47	708	17	the	the	DET
ddj-47	708	18	proposed	propose	VERB
ddj-47	708	19	non	non	ADJ
ddj-47	708	20	-	-	ADJ
ddj-47	708	21	local	local	ADJ
ddj-47	708	22	conservation	conservation	NOUN
ddj-47	708	23	laws	law	NOUN
ddj-47	708	24	might	might	AUX
ddj-47	708	25	be	be	AUX
ddj-47	708	26	needed	need	VERB
ddj-47	708	27	.	.	PUNCT
ddj-47	709	1	two	two	NUM
ddj-47	709	2	-	-	PUNCT
ddj-47	709	3	point	point	NOUN
ddj-47	709	4	mutations	mutation	NOUN
ddj-47	709	5	would	would	AUX
ddj-47	709	6	also	also	ADV
ddj-47	709	7	correlate	correlate	VERB
ddj-47	709	8	the	the	DET
ddj-47	709	9	mutations	mutation	NOUN
ddj-47	709	10	of	of	ADP
ddj-47	709	11	the	the	DET
ddj-47	709	12	binding	bind	VERB
ddj-47	709	13	sites	site	NOUN
ddj-47	709	14	of	of	ADP
ddj-47	709	15	protein	protein	NOUN
ddj-47	709	16	and	and	CCONJ
ddj-47	709	17	ligand	ligand	NOUN
ddj-47	709	18	.	.	PUNCT
ddj-47	710	1	for	for	ADP
ddj-47	710	2	the	the	DET
ddj-47	710	3	model	model	NOUN
ddj-47	710	4	assuming	assume	VERB
ddj-47	710	5	two	two	NUM
ddj-47	710	6	flux	flux	NOUN
ddj-47	710	7	tubes	tube	NOUN
ddj-47	710	8	per	per	ADP
ddj-47	710	9	amino	amino	NOUN
ddj-47	710	10	-	-	PUNCT
ddj-47	710	11	acid	acid	NOUN
ddj-47	710	12	,	,	PUNCT
ddj-47	710	13	the	the	DET
ddj-47	710	14	prediction	prediction	NOUN
ddj-47	710	15	would	would	AUX
ddj-47	710	16	be	be	AUX
ddj-47	710	17	conserved	conserve	VERB
ddj-47	711	1	y	y	PROPN
ddj-47	711	2	=	=	PUNCT
ddj-47	711	3	z	z	PROPN
ddj-47	711	4	(	(	PUNCT
ddj-47	711	5	y	y	NOUN
ddj-47	711	6	=	=	PUNCT
ddj-47	711	7	zc	zc	X
ddj-47	711	8	)	)	PUNCT
ddj-47	711	9	pairs	pair	NOUN
ddj-47	711	10	in	in	ADP
ddj-47	711	11	genes	gene	NOUN
ddj-47	711	12	coding	code	VERB
ddj-47	711	13	for	for	ADP
ddj-47	711	14	protein	protein	NOUN
ddj-47	711	15	and	and	CCONJ
ddj-47	711	16	ligand	ligand	NOUN
ddj-47	711	17	and	and	CCONJ
ddj-47	711	18	these	these	DET
ddj-47	711	19	pairs	pair	NOUN
ddj-47	711	20	might	might	AUX
ddj-47	711	21	allow	allow	VERB
ddj-47	711	22	to	to	PART
ddj-47	711	23	deduce	deduce	VERB
ddj-47	711	24	the	the	DET
ddj-47	711	25	paired	pair	VERB
ddj-47	711	26	points	point	NOUN
ddj-47	711	27	.	.	PUNCT
ddj-47	712	1	this	this	PRON
ddj-47	712	2	is	be	AUX
ddj-47	712	3	consistent	consistent	ADJ
ddj-47	712	4	with	with	ADP
ddj-47	712	5	the	the	DET
ddj-47	712	6	fact	fact	NOUN
ddj-47	712	7	that	that	SCONJ
ddj-47	712	8	hydrophobic	hydrophobic	NOUN
ddj-47	712	9	(	(	PUNCT
ddj-47	712	10	-philic	-philic	NOUN
ddj-47	712	11	)	)	PUNCT
ddj-47	712	12	regions	region	NOUN
ddj-47	712	13	tend	tend	VERB
ddj-47	712	14	to	to	PART
ddj-47	712	15	be	be	AUX
ddj-47	712	16	paired	pair	VERB
ddj-47	712	17	in	in	ADP
ddj-47	712	18	the	the	DET
ddj-47	712	19	protein	protein	NOUN
ddj-47	712	20	-	-	PUNCT
ddj-47	712	21	ligand	ligand	NOUN
ddj-47	712	22	complex	complex	NOUN
ddj-47	712	23	.	.	PUNCT
ddj-47	713	1	the	the	DET
ddj-47	713	2	paired	pair	VERB
ddj-47	713	3	nucleotides	nucleotide	NOUN
ddj-47	713	4	need	need	AUX
ddj-47	713	5	not	not	PART
ddj-47	713	6	belong	belong	VERB
ddj-47	713	7	to	to	ADP
ddj-47	713	8	the	the	DET
ddj-47	713	9	same	same	ADJ
ddj-47	713	10	strand	strand	NOUN
ddj-47	713	11	since	since	SCONJ
ddj-47	713	12	genes	gene	NOUN
ddj-47	713	13	are	be	AUX
ddj-47	713	14	evenly	evenly	ADV
ddj-47	713	15	distributed	distribute	VERB
ddj-47	713	16	between	between	ADP
ddj-47	713	17	strand	strand	NOUN
ddj-47	713	18	and	and	CCONJ
ddj-47	713	19	its	its	PRON
ddj-47	713	20	conjugate	conjugate	NOUN
ddj-47	713	21	and	and	CCONJ
ddj-47	713	22	characterized	characterize	VERB
ddj-47	713	23	by	by	ADP
ddj-47	713	24	a	a	DET
ddj-47	713	25	,	,	PUNCT
ddj-47	713	26	g	g	NOUN
ddj-47	713	27	surplus	surplus	NOUN
ddj-47	713	28	.	.	PUNCT
ddj-47	714	1	5	5	NUM
ddj-47	714	2	.	.	X
ddj-47	714	3	if	if	SCONJ
ddj-47	714	4	the	the	DET
ddj-47	714	5	flux	flux	NOUN
ddj-47	714	6	tubes	tube	NOUN
ddj-47	714	7	can	can	AUX
ddj-47	714	8	connect	connect	VERB
ddj-47	714	9	also	also	ADV
ddj-47	714	10	side	side	NOUN
ddj-47	714	11	chains	chain	NOUN
ddj-47	714	12	,	,	PUNCT
ddj-47	714	13	the	the	DET
ddj-47	714	14	situation	situation	NOUN
ddj-47	714	15	becomes	become	VERB
ddj-47	714	16	more	more	ADV
ddj-47	714	17	complex	complex	ADJ
ddj-47	714	18	.	.	PUNCT
ddj-47	715	1	there	there	PRON
ddj-47	715	2	is	be	VERB
ddj-47	715	3	a	a	DET
ddj-47	715	4	temptation	temptation	NOUN
ddj-47	715	5	to	to	PART
ddj-47	715	6	think	think	VERB
ddj-47	715	7	that	that	SCONJ
ddj-47	715	8	these	these	DET
ddj-47	715	9	flux	flux	NOUN
ddj-47	715	10	tubes	tube	NOUN
ddj-47	715	11	would	would	AUX
ddj-47	715	12	connect	connect	VERB
ddj-47	715	13	only	only	ADV
ddj-47	715	14	the	the	DET
ddj-47	715	15	nearby	nearby	ADJ
ddj-47	715	16	amino	amino	NOUN
ddj-47	715	17	-	-	PUNCT
ddj-47	715	18	acids	acid	NOUN
ddj-47	715	19	of	of	ADP
ddj-47	715	20	the	the	DET
ddj-47	715	21	same	same	ADJ
ddj-47	715	22	peptide	peptide	NOUN
ddj-47	715	23	and	and	CCONJ
ddj-47	715	24	do	do	AUX
ddj-47	715	25	not	not	PART
ddj-47	715	26	therefore	therefore	ADV
ddj-47	715	27	affect	affect	VERB
ddj-47	715	28	the	the	DET
ddj-47	715	29	large	large	ADJ
ddj-47	715	30	scale	scale	NOUN
ddj-47	715	31	dynamics	dynamic	NOUN
ddj-47	715	32	of	of	ADP
ddj-47	715	33	folding	folding	NOUN
ddj-47	715	34	.	.	PUNCT
ddj-47	716	1	this	this	PRON
ddj-47	716	2	would	would	AUX
ddj-47	716	3	be	be	AUX
ddj-47	716	4	the	the	DET
ddj-47	716	5	case	case	NOUN
ddj-47	716	6	if	if	SCONJ
ddj-47	716	7	the	the	DET
ddj-47	716	8	value	value	NOUN
ddj-47	716	9	of	of	ADP
ddj-47	716	10	planck	planck	NOUN
ddj-47	716	11	constant	constant	ADJ
ddj-47	716	12	associated	associate	VERB
ddj-47	716	13	with	with	ADP
ddj-47	716	14	these	these	DET
ddj-47	716	15	flux	flux	NOUN
ddj-47	716	16	tubes	tube	NOUN
ddj-47	716	17	is	be	AUX
ddj-47	716	18	smaller	small	ADJ
ddj-47	716	19	than	than	ADP
ddj-47	716	20	for	for	ADP
ddj-47	716	21	the	the	DET
ddj-47	716	22	flux	flux	NOUN
ddj-47	716	23	tubes	tube	NOUN
ddj-47	716	24	connecting	connect	VERB
ddj-47	716	25	amino	amino	NOUN
ddj-47	716	26	-	-	PUNCT
ddj-47	716	27	acids	acid	NOUN
ddj-47	716	28	as	as	ADP
ddj-47	716	29	basic	basic	ADJ
ddj-47	716	30	units	unit	NOUN
ddj-47	716	31	.	.	PUNCT
ddj-47	717	1	if	if	SCONJ
ddj-47	717	2	flux	flux	NOUN
ddj-47	717	3	tubes	tube	NOUN
ddj-47	717	4	can	can	AUX
ddj-47	717	5	begin	begin	VERB
ddj-47	717	6	from	from	ADP
ddj-47	717	7	the	the	DET
ddj-47	717	8	aromatic	aromatic	ADJ
ddj-47	717	9	side	side	NOUN
ddj-47	717	10	chains	chain	NOUN
ddj-47	717	11	,	,	PUNCT
ddj-47	717	12	the	the	DET
ddj-47	717	13	replacement	replacement	NOUN
ddj-47	717	14	of	of	ADP
ddj-47	717	15	an	an	DET
ddj-47	717	16	aromatic	aromatic	ADJ
ddj-47	717	17	side	side	NOUN
ddj-47	717	18	chain	chain	NOUN
ddj-47	717	19	with	with	ADP
ddj-47	717	20	an	an	DET
ddj-47	717	21	aromatic	aromatic	ADJ
ddj-47	717	22	side	side	NOUN
ddj-47	717	23	chain	chain	NOUN
ddj-47	717	24	is	be	AUX
ddj-47	717	25	favored	favor	VERB
ddj-47	717	26	(	(	PUNCT
ddj-47	717	27	also	also	ADV
ddj-47	717	28	chemical	chemical	ADJ
ddj-47	717	29	similarity	similarity	NOUN
ddj-47	717	30	explains	explain	VERB
ddj-47	717	31	this	this	PRON
ddj-47	717	32	)	)	PUNCT
ddj-47	717	33	.	.	PUNCT
ddj-47	718	1	the	the	DET
ddj-47	718	2	most	most	ADV
ddj-47	718	3	basic	basic	ADJ
ddj-47	718	4	facts	fact	NOUN
ddj-47	718	5	about	about	ADP
ddj-47	718	6	folding	folding	NOUN
ddj-47	718	7	do	do	AUX
ddj-47	718	8	not	not	PART
ddj-47	718	9	provide	provide	VERB
ddj-47	718	10	obvious	obvious	ADJ
ddj-47	718	11	support	support	NOUN
ddj-47	718	12	for	for	ADP
ddj-47	718	13	the	the	DET
ddj-47	718	14	idea	idea	NOUN
ddj-47	718	15	about	about	ADP
ddj-47	718	16	flux	flux	NOUN
ddj-47	718	17	tubes	tube	NOUN
ddj-47	718	18	between	between	ADP
ddj-47	718	19	residues	residue	NOUN
ddj-47	718	20	.	.	PUNCT
ddj-47	719	1	i	i	PRON
ddj-47	719	2	)	)	PUNCT
ddj-47	719	3	hydrophobic	hydrophobic	NOUN
ddj-47	719	4	residues	residue	NOUN
ddj-47	719	5	tend	tend	VERB
ddj-47	719	6	to	to	PART
ddj-47	719	7	cluster	cluster	VERB
ddj-47	719	8	in	in	ADP
ddj-47	719	9	dense	dense	ADJ
ddj-47	719	10	packing	packing	NOUN
ddj-47	719	11	in	in	ADP
ddj-47	719	12	protein	protein	NOUN
ddj-47	719	13	interior	interior	NOUN
ddj-47	719	14	(	(	PUNCT
ddj-47	719	15	antimatter	antimatter	NOUN
ddj-47	719	16	at	at	ADP
ddj-47	719	17	quark	quark	PROPN
ddj-47	719	18	level	level	NOUN
ddj-47	719	19	)	)	PUNCT
ddj-47	719	20	and	and	CCONJ
ddj-47	719	21	val	val	NOUN
ddj-47	719	22	(	(	PUNCT
ddj-47	719	23	t	t	PROPN
ddj-47	719	24	)	)	PUNCT
ddj-47	719	25	,	,	PUNCT
ddj-47	719	26	leu	leu	PROPN
ddj-47	719	27	(	(	PUNCT
ddj-47	719	28	t	t	PROPN
ddj-47	719	29	)	)	PUNCT
ddj-47	719	30	,	,	PUNCT
ddj-47	719	31	ile	ile	PROPN
ddj-47	719	32	(	(	PUNCT
ddj-47	719	33	t	t	PROPN
ddj-47	719	34	)	)	PUNCT
ddj-47	719	35	,	,	PUNCT
ddj-47	719	36	phe	phe	PROPN
ddj-47	719	37	(	(	PUNCT
ddj-47	719	38	t	t	PROPN
ddj-47	719	39	)	)	PUNCT
ddj-47	719	40	,	,	PUNCT
ddj-47	719	41	ala	ala	PROPN
ddj-47	719	42	(	(	PUNCT
ddj-47	719	43	c	c	NOUN
ddj-47	719	44	)	)	PUNCT
ddj-47	719	45	,	,	PUNCT
ddj-47	719	46	and	and	CCONJ
ddj-47	719	47	gly	gly	ADV
ddj-47	719	48	(	(	PUNCT
ddj-47	719	49	g	g	NOUN
ddj-47	719	50	)	)	PUNCT
ddj-47	719	51	make	make	VERB
ddj-47	719	52	63	63	NUM
ddj-47	719	53	percent	percent	NOUN
ddj-47	719	54	of	of	ADP
ddj-47	719	55	the	the	DET
ddj-47	719	56	interior	interior	NOUN
ddj-47	719	57	of	of	ADP
ddj-47	719	58	protein	protein	NOUN
ddj-47	719	59	:	:	PUNCT
ddj-47	719	60	the	the	DET
ddj-47	719	61	special	special	ADJ
ddj-47	719	62	role	role	NOUN
ddj-47	719	63	of	of	ADP
ddj-47	719	64	gly	gly	NOUN
ddj-47	719	65	(	(	PUNCT
ddj-47	719	66	matter	matter	NOUN
ddj-47	719	67	rather	rather	ADV
ddj-47	719	68	than	than	ADP
ddj-47	719	69	antimatter	antimatter	NOUN
ddj-47	719	70	at	at	ADP
ddj-47	719	71	quark	quark	PROPN
ddj-47	719	72	level	level	NOUN
ddj-47	719	73	)	)	PUNCT
ddj-47	719	74	is	be	AUX
ddj-47	719	75	due	due	ADJ
ddj-47	719	76	to	to	ADP
ddj-47	719	77	the	the	DET
ddj-47	719	78	reduction	reduction	NOUN
ddj-47	719	79	of	of	ADP
ddj-47	719	80	the	the	DET
ddj-47	719	81	side	side	NOUN
ddj-47	719	82	chain	chain	NOUN
ddj-47	719	83	to	to	ADP
ddj-47	719	84	hydrogen	hydrogen	NOUN
ddj-47	719	85	atom	atom	NOUN
ddj-47	719	86	.	.	PUNCT
ddj-47	720	1	ii	ii	PROPN
ddj-47	720	2	)	)	PUNCT
ddj-47	720	3	asp	asp	PROPN
ddj-47	720	4	(	(	PUNCT
ddj-47	720	5	a	a	NOUN
ddj-47	720	6	)	)	PUNCT
ddj-47	720	7	,	,	PUNCT
ddj-47	720	8	glu	glu	NOUN
ddj-47	720	9	(	(	PUNCT
ddj-47	720	10	a	a	NOUN
ddj-47	720	11	)	)	PUNCT
ddj-47	720	12	,	,	PUNCT
ddj-47	720	13	lys	lys	PROPN
ddj-47	720	14	(	(	PUNCT
ddj-47	720	15	a	a	NOUN
ddj-47	720	16	)	)	PUNCT
ddj-47	720	17	and	and	CCONJ
ddj-47	720	18	arg	arg	NOUN
ddj-47	720	19	(	(	PUNCT
ddj-47	720	20	g	g	NOUN
ddj-47	720	21	)	)	PUNCT
ddj-47	720	22	with	with	ADP
ddj-47	720	23	ionized	ionized	ADJ
ddj-47	720	24	residues	residue	NOUN
ddj-47	720	25	are	be	AUX
ddj-47	720	26	mostly	mostly	ADV
ddj-47	720	27	at	at	ADP
ddj-47	720	28	the	the	DET
ddj-47	720	29	surface	surface	NOUN
ddj-47	720	30	of	of	ADP
ddj-47	720	31	protein	protein	NOUN
ddj-47	720	32	and	and	CCONJ
ddj-47	720	33	make	make	VERB
ddj-47	720	34	23	23	NUM
ddj-47	720	35	per	per	ADP
ddj-47	720	36	cent	cent	NOUN
ddj-47	720	37	of	of	ADP
ddj-47	720	38	protein	protein	NOUN
ddj-47	720	39	surface	surface	NOUN
ddj-47	720	40	and	and	CCONJ
ddj-47	720	41	4	4	NUM
ddj-47	720	42	per	per	ADP
ddj-47	720	43	cent	cent	NOUN
ddj-47	720	44	of	of	ADP
ddj-47	720	45	interior	interior	NOUN
ddj-47	720	46	.	.	PUNCT
ddj-47	721	1	as	as	SCONJ
ddj-47	721	2	noticed	notice	VERB
ddj-47	721	3	earlier	early	ADV
ddj-47	721	4	,	,	PUNCT
ddj-47	721	5	matter	matter	NOUN
ddj-47	721	6	and	and	CCONJ
ddj-47	721	7	antimatter	antimatter	NOUN
ddj-47	721	8	at	at	ADP
ddj-47	721	9	quark	quark	PROPN
ddj-47	721	10	level	level	NOUN
ddj-47	721	11	tend	tend	VERB
ddj-47	721	12	to	to	PART
ddj-47	721	13	be	be	AUX
ddj-47	721	14	far	far	ADV
ddj-47	721	15	from	from	ADP
ddj-47	721	16	each	each	DET
ddj-47	721	17	other	other	ADJ
ddj-47	721	18	.	.	PUNCT
ddj-47	722	1	this	this	PRON
ddj-47	722	2	is	be	AUX
ddj-47	722	3	consistent	consistent	ADJ
ddj-47	722	4	with	with	ADP
ddj-47	722	5	y	y	PROPN
ddj-47	722	6	=	=	SYM
ddj-47	722	7	z	z	NOUN
ddj-47	722	8	pairing	pairing	NOUN
ddj-47	722	9	between	between	ADP
ddj-47	722	10	nearby	nearby	ADJ
ddj-47	722	11	amino	amino	NOUN
ddj-47	722	12	-	-	PUNCT
ddj-47	722	13	acids	acid	NOUN
ddj-47	722	14	and	and	CCONJ
ddj-47	722	15	absence	absence	NOUN
ddj-47	722	16	of	of	ADP
ddj-47	722	17	flux	flux	NOUN
ddj-47	722	18	tubes	tube	NOUN
ddj-47	722	19	between	between	ADP
ddj-47	722	20	matter	matter	NOUN
ddj-47	722	21	and	and	CCONJ
ddj-47	722	22	antimatter	antimatter	NOUN
ddj-47	722	23	if	if	SCONJ
ddj-47	722	24	there	there	PRON
ddj-47	722	25	are	be	VERB
ddj-47	722	26	two	two	NUM
ddj-47	722	27	flux	flux	NOUN
ddj-47	722	28	tubes	tube	NOUN
ddj-47	722	29	per	per	ADP
ddj-47	722	30	amino	amino	NOUN
ddj-47	722	31	-	-	PUNCT
ddj-47	722	32	acid	acid	NOUN
ddj-47	722	33	.	.	PUNCT
ddj-47	723	1	iii	iii	X
ddj-47	723	2	)	)	PUNCT
ddj-47	723	3	polar	polar	ADJ
ddj-47	723	4	groups	group	NOUN
ddj-47	723	5	tend	tend	VERB
ddj-47	723	6	to	to	PART
ddj-47	723	7	be	be	AUX
ddj-47	723	8	paired	pair	VERB
ddj-47	723	9	by	by	ADP
ddj-47	723	10	hydrogen	hydrogen	NOUN
ddj-47	723	11	bonds	bond	NOUN
ddj-47	723	12	and	and	CCONJ
ddj-47	723	13	oppositely	oppositely	ADV
ddj-47	723	14	charged	charge	VERB
ddj-47	723	15	groups	group	NOUN
ddj-47	723	16	tend	tend	VERB
ddj-47	723	17	to	to	PART
ddj-47	723	18	be	be	AUX
ddj-47	723	19	near	near	ADP
ddj-47	723	20	each	each	DET
ddj-47	723	21	other	other	ADJ
ddj-47	723	22	.	.	PUNCT
ddj-47	724	1	acidic	acidic	ADJ
ddj-47	724	2	cys	cys	PROPN
ddj-47	724	3	residues	residue	NOUN
ddj-47	724	4	tend	tend	VERB
ddj-47	724	5	to	to	PART
ddj-47	724	6	be	be	AUX
ddj-47	724	7	in	in	ADP
ddj-47	724	8	positions	position	NOUN
ddj-47	724	9	where	where	SCONJ
ddj-47	724	10	they	they	PRON
ddj-47	724	11	can	can	AUX
ddj-47	724	12	form	form	VERB
ddj-47	724	13	s−s	s−s	ADJ
ddj-47	724	14	bonds	bond	NOUN
ddj-47	724	15	.	.	PUNCT
ddj-47	725	1	this	this	PRON
ddj-47	725	2	can	can	AUX
ddj-47	725	3	be	be	AUX
ddj-47	725	4	explained	explain	VERB
ddj-47	725	5	as	as	ADP
ddj-47	725	6	being	be	AUX
ddj-47	725	7	induced	induce	VERB
ddj-47	725	8	by	by	ADP
ddj-47	725	9	y	y	PROPN
ddj-47	725	10	−	−	PROPN
ddj-47	725	11	y	y	PROPN
ddj-47	725	12	pairing	pair	VERB
ddj-47	725	13	in	in	ADP
ddj-47	725	14	the	the	DET
ddj-47	725	15	proposed	propose	VERB
ddj-47	725	16	scenario	scenario	NOUN
ddj-47	725	17	.	.	PUNCT
ddj-47	726	1	aromatic	aromatic	ADJ
ddj-47	726	2	residues	residue	NOUN
ddj-47	726	3	tend	tend	VERB
ddj-47	726	4	to	to	PART
ddj-47	726	5	have	have	VERB
ddj-47	726	6	favorable	favorable	ADJ
ddj-47	726	7	electrostatic	electrostatic	ADJ
ddj-47	726	8	interactions	interaction	NOUN
ddj-47	726	9	with	with	ADP
ddj-47	726	10	each	each	DET
ddj-47	726	11	other	other	ADJ
ddj-47	726	12	and	and	CCONJ
ddj-47	726	13	with	with	ADP
ddj-47	726	14	s	s	PROPN
ddj-47	726	15	,	,	PUNCT
ddj-47	726	16	o	o	NOUN
ddj-47	726	17	and	and	CCONJ
ddj-47	726	18	amino	amino	ADJ
ddj-47	726	19	groups	group	NOUN
ddj-47	726	20	.	.	PUNCT
ddj-47	727	1	4	4	NUM
ddj-47	727	2	a	a	DET
ddj-47	727	3	simple	simple	ADJ
ddj-47	727	4	quantitative	quantitative	ADJ
ddj-47	727	5	model	model	NOUN
ddj-47	727	6	for	for	ADP
ddj-47	727	7	protein	protein	NOUN
ddj-47	727	8	folding	folding	NOUN
ddj-47	727	9	and	and	CCONJ
ddj-47	727	10	catalyst	catalyst	NOUN
ddj-47	727	11	action	action	NOUN
ddj-47	727	12	assuming	assume	VERB
ddj-47	727	13	flux	flux	NOUN
ddj-47	727	14	tubes	tube	NOUN
ddj-47	727	15	between	between	ADP
ddj-47	727	16	amino	amino	NOUN
ddj-47	727	17	-	-	PUNCT
ddj-47	727	18	acids	acid	NOUN
ddj-47	727	19	levinthal	levinthal	NOUN
ddj-47	727	20	paradox	paradox	NOUN
ddj-47	727	21	states	state	NOUN
ddj-47	727	22	that	that	SCONJ
ddj-47	727	23	if	if	SCONJ
ddj-47	727	24	protein	protein	NOUN
ddj-47	727	25	folding	fold	VERB
ddj-47	727	26	is	be	AUX
ddj-47	727	27	a	a	DET
ddj-47	727	28	process	process	NOUN
ddj-47	727	29	in	in	ADP
ddj-47	727	30	which	which	PRON
ddj-47	727	31	protein	protein	NOUN
ddj-47	727	32	checks	check	VERB
ddj-47	727	33	for	for	ADP
ddj-47	727	34	all	all	DET
ddj-47	727	35	possible	possible	ADJ
ddj-47	727	36	conformations	conformation	NOUN
ddj-47	727	37	,	,	PUNCT
ddj-47	727	38	folding	fold	VERB
ddj-47	727	39	would	would	AUX
ddj-47	727	40	take	take	VERB
ddj-47	727	41	astrophysical	astrophysical	ADJ
ddj-47	727	42	time	time	NOUN
ddj-47	727	43	.	.	PUNCT
ddj-47	728	1	small	small	ADJ
ddj-47	728	2	single	single	ADJ
ddj-47	728	3	domain	domain	NOUN
ddj-47	728	4	proteins	protein	NOUN
ddj-47	728	5	with	with	ADP
ddj-47	728	6	lengths	length	NOUN
ddj-47	728	7	below	below	ADP
ddj-47	728	8	100	100	NUM
ddj-47	728	9	residues	residue	NOUN
ddj-47	728	10	however	however	ADV
ddj-47	728	11	fold	fold	VERB
ddj-47	728	12	in	in	ADV
ddj-47	728	13	single	single	ADJ
ddj-47	728	14	step	step	NOUN
ddj-47	728	15	in	in	ADP
ddj-47	728	16	millisecond	millisecond	NOUN
ddj-47	728	17	time	time	NOUN
ddj-47	728	18	scale	scale	NOUN
ddj-47	728	19	and	and	CCONJ
ddj-47	728	20	longest	long	ADJ
ddj-47	728	21	folding	folding	NOUN
ddj-47	728	22	times	time	NOUN
ddj-47	728	23	are	be	AUX
ddj-47	728	24	measured	measure	VERB
ddj-47	728	25	in	in	ADP
ddj-47	728	26	days	day	NOUN
ddj-47	728	27	.	.	PUNCT
ddj-47	729	1	this	this	PRON
ddj-47	729	2	suggests	suggest	VERB
ddj-47	729	3	that	that	SCONJ
ddj-47	729	4	protein	protein	NOUN
ddj-47	729	5	folding	folding	NOUN
ddj-47	729	6	is	be	AUX
ddj-47	729	7	in	in	ADP
ddj-47	729	8	some	some	DET
ddj-47	729	9	sense	sense	NOUN
ddj-47	729	10	guided	guide	VERB
ddj-47	729	11	dynamical	dynamical	ADJ
ddj-47	729	12	process	process	NOUN
ddj-47	729	13	and	and	CCONJ
ddj-47	729	14	flux	flux	PROPN
ddj-47	729	15	tubes	tube	NOUN
ddj-47	729	16	would	would	AUX
ddj-47	729	17	be	be	AUX
ddj-47	729	18	the	the	DET
ddj-47	729	19	natural	natural	ADJ
ddj-47	729	20	guides	guide	NOUN
ddj-47	729	21	.	.	PUNCT
ddj-47	730	1	it	it	PRON
ddj-47	730	2	is	be	AUX
ddj-47	730	3	possible	possible	ADJ
ddj-47	730	4	to	to	PART
ddj-47	730	5	construct	construct	VERB
ddj-47	730	6	a	a	DET
ddj-47	730	7	simple	simple	ADJ
ddj-47	730	8	quantitative	quantitative	ADJ
ddj-47	730	9	model	model	NOUN
ddj-47	730	10	for	for	ADP
ddj-47	730	11	protein	protein	NOUN
ddj-47	730	12	folding	folding	NOUN
ddj-47	730	13	and	and	CCONJ
ddj-47	730	14	catalyst	catalyst	NOUN
ddj-47	730	15	action	action	NOUN
ddj-47	730	16	assuming	assume	VERB
ddj-47	730	17	a	a	DET
ddj-47	730	18	long	long	ADJ
ddj-47	730	19	range	range	NOUN
ddj-47	730	20	interaction	interaction	NOUN
ddj-47	730	21	mediated	mediate	VERB
ddj-47	730	22	by	by	ADP
ddj-47	730	23	flux	flux	NOUN
ddj-47	730	24	tubes	tube	NOUN
ddj-47	730	25	between	between	ADP
ddj-47	730	26	amino	amino	NOUN
ddj-47	730	27	-	-	PUNCT
ddj-47	730	28	acids	acid	NOUN
ddj-47	730	29	obeying	obey	VERB
ddj-47	730	30	base	base	NOUN
ddj-47	730	31	pairing	pair	VERB
ddj-47	730	32	rule	rule	NOUN
ddj-47	730	33	in	in	ADP
ddj-47	730	34	some	some	DET
ddj-47	730	35	sense	sense	NOUN
ddj-47	730	36	.	.	PUNCT
ddj-47	731	1	a	a	DET
ddj-47	731	2	further	further	ADJ
ddj-47	731	3	assumption	assumption	NOUN
ddj-47	731	4	is	be	AUX
ddj-47	731	5	that	that	SCONJ
ddj-47	731	6	hydrogen	hydrogen	NOUN
ddj-47	731	7	bonds	bond	NOUN
ddj-47	731	8	correspond	correspond	VERB
ddj-47	731	9	to	to	PART
ddj-47	731	10	flux	flux	VERB
ddj-47	731	11	tubes	tube	NOUN
ddj-47	731	12	.	.	PUNCT
ddj-47	732	1	there	there	PRON
ddj-47	732	2	are	be	VERB
ddj-47	732	3	two	two	NUM
ddj-47	732	4	options	option	NOUN
ddj-47	732	5	to	to	PART
ddj-47	732	6	consider	consider	VERB
ddj-47	732	7	.	.	PUNCT
ddj-47	733	1	1	1	X
ddj-47	733	2	.	.	X
ddj-47	734	1	if	if	SCONJ
ddj-47	734	2	there	there	PRON
ddj-47	734	3	is	be	VERB
ddj-47	734	4	only	only	ADV
ddj-47	734	5	single	single	ADJ
ddj-47	734	6	flux	flux	NOUN
ddj-47	734	7	tube	tube	NOUN
ddj-47	734	8	per	per	ADP
ddj-47	734	9	amino	amino	NOUN
ddj-47	734	10	-	-	PUNCT
ddj-47	734	11	acid	acid	NOUN
ddj-47	734	12	the	the	DET
ddj-47	734	13	rule	rule	NOUN
ddj-47	734	14	implies	imply	VERB
ddj-47	734	15	that	that	SCONJ
ddj-47	734	16	conjugate	conjugate	ADJ
ddj-47	734	17	amino	amino	NOUN
ddj-47	734	18	-	-	PUNCT
ddj-47	734	19	acids	acid	NOUN
ddj-47	734	20	are	be	AUX
ddj-47	734	21	connected	connect	VERB
ddj-47	734	22	by	by	ADP
ddj-47	734	23	a	a	DET
ddj-47	734	24	flux	flux	NOUN
ddj-47	734	25	tube	tube	NOUN
ddj-47	734	26	:	:	PUNCT
ddj-47	734	27	this	this	PRON
ddj-47	734	28	is	be	AUX
ddj-47	734	29	conflict	conflict	NOUN
ddj-47	734	30	with	with	ADP
ddj-47	734	31	the	the	DET
ddj-47	734	32	empirical	empirical	ADJ
ddj-47	734	33	facts	fact	NOUN
ddj-47	734	34	.	.	PUNCT
ddj-47	735	1	2	2	X
ddj-47	735	2	.	.	X
ddj-47	735	3	if	if	SCONJ
ddj-47	735	4	there	there	PRON
ddj-47	735	5	are	be	VERB
ddj-47	735	6	two	two	NUM
ddj-47	735	7	flux	flux	NOUN
ddj-47	735	8	tubes	tube	NOUN
ddj-47	735	9	per	per	ADP
ddj-47	735	10	amino	amino	NOUN
ddj-47	735	11	-	-	PUNCT
ddj-47	735	12	acid	acid	NOUN
ddj-47	735	13	base	base	NOUN
ddj-47	735	14	pairing	pairing	NOUN
ddj-47	735	15	predicts	predict	NOUN
ddj-47	735	16	that	that	SCONJ
ddj-47	735	17	amino	amino	NOUN
ddj-47	735	18	-	-	PUNCT
ddj-47	735	19	adic	adic	NOUN
ddj-47	735	20	pairing	pairing	NOUN
ddj-47	735	21	obeys	obey	NOUN
ddj-47	735	22	y	y	NOUN
ddj-47	735	23	=	=	SYM
ddj-47	735	24	z	z	PROPN
ddj-47	735	25	or	or	CCONJ
ddj-47	735	26	y	y	PROPN
ddj-47	735	27	=	=	PUNCT
ddj-47	735	28	zc	zc	PROPN
ddj-47	735	29	rule	rule	NOUN
ddj-47	735	30	depending	depend	VERB
ddj-47	735	31	on	on	ADP
ddj-47	735	32	whether	whether	SCONJ
ddj-47	735	33	o	o	NOUN
ddj-47	735	34	=	=	NOUN
ddj-47	735	35	:	:	PUNCT
ddj-47	735	36	s	s	VERB
ddj-47	735	37	can	can	AUX
ddj-47	735	38	act	act	VERB
ddj-47	735	39	as	as	ADP
ddj-47	735	40	intermediate	intermediate	ADJ
ddj-47	735	41	plugs	plug	NOUN
ddj-47	735	42	for	for	ADP
ddj-47	735	43	flux	flux	NOUN
ddj-47	735	44	tubes	tube	NOUN
ddj-47	735	45	or	or	CCONJ
ddj-47	735	46	not	not	PART
ddj-47	735	47	.	.	PUNCT
ddj-47	736	1	the	the	DET
ddj-47	736	2	model	model	NOUN
ddj-47	736	3	is	be	AUX
ddj-47	736	4	consistent	consistent	ADJ
ddj-47	736	5	with	with	ADP
ddj-47	736	6	quantum	quantum	ADJ
ddj-47	736	7	criticality	criticality	NOUN
ddj-47	736	8	,	,	PUNCT
ddj-47	736	9	and	and	CCONJ
ddj-47	736	10	the	the	DET
ddj-47	736	11	general	general	ADJ
ddj-47	736	12	vision	vision	NOUN
ddj-47	736	13	about	about	ADV
ddj-47	736	14	4	4	NUM
ddj-47	736	15	-	-	SYM
ddj-47	736	16	d	d	NOUN
ddj-47	736	17	spin	spin	NOUN
ddj-47	736	18	glass	glass	NOUN
ddj-47	736	19	landscape	landscape	NOUN
ddj-47	736	20	.	.	PUNCT
ddj-47	737	1	the	the	DET
ddj-47	737	2	extremals	extremal	NOUN
ddj-47	737	3	are	be	AUX
ddj-47	737	4	not	not	PART
ddj-47	737	5	completely	completely	ADV
ddj-47	737	6	deterministic	deterministic	ADJ
ddj-47	737	7	just	just	ADV
ddj-47	737	8	as	as	SCONJ
ddj-47	737	9	vacuum	vacuum	NOUN
ddj-47	737	10	extremals	extremal	NOUN
ddj-47	737	11	of	of	ADP
ddj-47	737	12	kähler	kähler	NOUN
ddj-47	737	13	action	action	NOUN
ddj-47	737	14	and	and	CCONJ
ddj-47	737	15	only	only	ADV
ddj-47	737	16	absolute	absolute	ADJ
ddj-47	737	17	minimization	minimization	NOUN
ddj-47	737	18	of	of	ADP
ddj-47	737	19	energy	energy	NOUN
ddj-47	737	20	selects	select	NOUN
ddj-47	737	21	minima	minima	VERB
ddj-47	737	22	.	.	PUNCT
ddj-47	738	1	the	the	DET
ddj-47	738	2	cautious	cautious	ADJ
ddj-47	738	3	interpretation	interpretation	NOUN
ddj-47	738	4	is	be	AUX
ddj-47	738	5	that	that	SCONJ
ddj-47	738	6	absolute	absolute	ADJ
ddj-47	738	7	minimization	minimization	NOUN
ddj-47	738	8	of	of	ADP
ddj-47	738	9	energy	energy	NOUN
ddj-47	738	10	stabilizes	stabilize	VERB
ddj-47	738	11	various	various	ADJ
ddj-47	738	12	unstable	unstable	ADJ
ddj-47	738	13	patterns	pattern	NOUN
ddj-47	738	14	generated	generate	VERB
ddj-47	738	15	spontaneously	spontaneously	ADV
ddj-47	738	16	by	by	ADP
ddj-47	738	17	ordinary	ordinary	ADJ
ddj-47	738	18	chemical	chemical	ADJ
ddj-47	738	19	interactions	interaction	NOUN
ddj-47	738	20	such	such	ADJ
ddj-47	738	21	as	as	ADP
ddj-47	738	22	alpha	alpha	ADJ
ddj-47	738	23	helices	helix	NOUN
ddj-47	738	24	and	and	CCONJ
ddj-47	738	25	beta	beta	NOUN
ddj-47	738	26	sheets	sheet	NOUN
ddj-47	738	27	.	.	PUNCT
ddj-47	739	1	the	the	DET
ddj-47	739	2	interpretation	interpretation	NOUN
ddj-47	739	3	of	of	ADP
ddj-47	739	4	hydrogen	hydrogen	NOUN
ddj-47	739	5	bond	bond	NOUN
ddj-47	739	6	in	in	ADP
ddj-47	739	7	terms	term	NOUN
ddj-47	739	8	of	of	ADP
ddj-47	739	9	flux	flux	NOUN
ddj-47	739	10	tube	tube	NOUN
ddj-47	739	11	suggests	suggest	VERB
ddj-47	739	12	more	more	ADJ
ddj-47	739	13	bold	bold	ADJ
ddj-47	739	14	interpretation	interpretation	NOUN
ddj-47	739	15	.	.	PUNCT
ddj-47	740	1	the	the	DET
ddj-47	740	2	principle	principle	NOUN
ddj-47	740	3	is	be	AUX
ddj-47	740	4	flexible	flexible	ADJ
ddj-47	740	5	enough	enough	ADV
ddj-47	740	6	to	to	PART
ddj-47	740	7	carry	carry	VERB
ddj-47	740	8	out	out	ADP
ddj-47	740	9	this	this	DET
ddj-47	740	10	purpose	purpose	NOUN
ddj-47	740	11	but	but	CCONJ
ddj-47	740	12	also	also	ADV
ddj-47	740	13	poses	pose	VERB
ddj-47	740	14	strong	strong	ADJ
ddj-47	740	15	constraints	constraint	NOUN
ddj-47	740	16	on	on	ADP
ddj-47	740	17	how	how	SCONJ
ddj-47	740	18	these	these	DET
ddj-47	740	19	patterns	pattern	NOUN
ddj-47	740	20	integrate	integrate	VERB
ddj-47	740	21	to	to	ADP
ddj-47	740	22	higher	high	ADJ
ddj-47	740	23	level	level	NOUN
ddj-47	740	24	structures	structure	NOUN
ddj-47	740	25	.	.	PUNCT
ddj-47	741	1	the	the	DET
ddj-47	741	2	disappearance	disappearance	NOUN
ddj-47	741	3	of	of	ADP
ddj-47	741	4	a	a	DET
ddj-47	741	5	subset	subset	NOUN
ddj-47	741	6	of	of	ADP
ddj-47	741	7	flux	flux	NOUN
ddj-47	741	8	tubes	tube	NOUN
ddj-47	741	9	does	do	AUX
ddj-47	741	10	not	not	PART
ddj-47	741	11	spoil	spoil	VERB
ddj-47	741	12	the	the	DET
ddj-47	741	13	extremal	extremal	ADJ
ddj-47	741	14	property	property	NOUN
ddj-47	741	15	although	although	SCONJ
ddj-47	741	16	it	it	PRON
ddj-47	741	17	increases	increase	VERB
ddj-47	741	18	its	its	PRON
ddj-47	741	19	non	non	ADJ
ddj-47	741	20	-	-	NOUN
ddj-47	741	21	determinism	determinism	NOUN
ddj-47	741	22	and	and	CCONJ
ddj-47	741	23	makes	make	VERB
ddj-47	741	24	folding	fold	VERB
ddj-47	741	25	less	less	ADV
ddj-47	741	26	predictable	predictable	ADJ
ddj-47	741	27	and	and	CCONJ
ddj-47	741	28	in	in	ADP
ddj-47	741	29	the	the	DET
ddj-47	741	30	case	case	NOUN
ddj-47	741	31	of	of	ADP
ddj-47	741	32	binding	bind	VERB
ddj-47	741	33	sites	site	NOUN
ddj-47	741	34	it	it	PRON
ddj-47	741	35	reduces	reduce	VERB
ddj-47	741	36	the	the	DET
ddj-47	741	37	selectivity	selectivity	NOUN
ddj-47	741	38	of	of	ADP
ddj-47	741	39	catalyst	catalyst	NOUN
ddj-47	741	40	action	action	NOUN
ddj-47	741	41	.	.	PUNCT
ddj-47	742	1	the	the	DET
ddj-47	742	2	interpretation	interpretation	NOUN
ddj-47	742	3	would	would	AUX
ddj-47	742	4	be	be	AUX
ddj-47	742	5	in	in	ADP
ddj-47	742	6	terms	term	NOUN
ddj-47	742	7	of	of	ADP
ddj-47	742	8	molecular	molecular	ADJ
ddj-47	742	9	ageing	ageing	NOUN
ddj-47	742	10	.	.	PUNCT
ddj-47	743	1	the	the	DET
ddj-47	743	2	density	density	NOUN
ddj-47	743	3	of	of	ADP
ddj-47	743	4	flux	flux	NOUN
ddj-47	743	5	tubes	tube	NOUN
ddj-47	743	6	can	can	AUX
ddj-47	743	7	be	be	AUX
ddj-47	743	8	seen	see	VERB
ddj-47	743	9	as	as	ADP
ddj-47	743	10	an	an	DET
ddj-47	743	11	analog	analog	NOUN
ddj-47	743	12	for	for	ADP
ddj-47	743	13	the	the	DET
ddj-47	743	14	resolution	resolution	NOUN
ddj-47	743	15	of	of	ADP
ddj-47	743	16	quantum	quantum	NOUN
ddj-47	743	17	measurement	measurement	NOUN
ddj-47	743	18	which	which	PRON
ddj-47	743	19	is	be	AUX
ddj-47	743	20	issn	issn	NOUN
ddj-47	743	21	:	:	PUNCT
ddj-47	743	22	2159	2159	NUM
ddj-47	743	23	-	-	SYM
ddj-47	743	24	0465	0465	NUM
ddj-47	743	25	dna	dna	PROPN
ddj-47	743	26	decipher	decipher	PROPN
ddj-47	743	27	journal	journal	PROPN
ddj-47	743	28	june	june	PROPN
ddj-47	743	29	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	743	30	published	publish	VERB
ddj-47	743	31	by	by	ADP
ddj-47	743	32	quantumdream	quantumdream	PROPN
ddj-47	743	33	,	,	PUNCT
ddj-47	743	34	inc	inc	PROPN
ddj-47	743	35	.	.	PROPN
ddj-47	743	36	dna	dna	PROPN
ddj-47	743	37	decipher	decipher	PROPN
ddj-47	743	38	journal	journal	NOUN
ddj-47	743	39	|	|	ADV
ddj-47	743	40	may	may	AUX
ddj-47	743	41	2013	2013	NUM
ddj-47	743	42	|	|	ADV
ddj-47	743	43	volume	volume	NOUN
ddj-47	743	44	3	3	NUM
ddj-47	743	45	|	|	NOUN
ddj-47	743	46	issue	issue	VERB
ddj-47	743	47	1	1	NUM
ddj-47	743	48	|	|	ADV
ddj-47	743	49	pp	pp	ADJ
ddj-47	743	50	.	.	PUNCT
ddj-47	744	1	58	58	NUM
ddj-47	744	2	-	-	SYM
ddj-47	744	3	88	88	NUM
ddj-47	744	4	80	80	NUM
ddj-47	744	5	pitkänen	pitkänen	NOUN
ddj-47	744	6	,	,	PUNCT
ddj-47	744	7	m.	m.	NOUN
ddj-47	744	8	,	,	PUNCT
ddj-47	744	9	a	a	DET
ddj-47	744	10	model	model	NOUN
ddj-47	744	11	for	for	ADP
ddj-47	744	12	protein	protein	NOUN
ddj-47	744	13	folding	folding	NOUN
ddj-47	744	14	and	and	CCONJ
ddj-47	744	15	biocatalysis	biocatalysis	NOUN
ddj-47	744	16	in	in	ADP
ddj-47	744	17	a	a	DET
ddj-47	744	18	fundamental	fundamental	ADJ
ddj-47	744	19	role	role	NOUN
ddj-47	744	20	in	in	ADP
ddj-47	744	21	quantum	quantum	PROPN
ddj-47	744	22	tgd	tgd	PROPN
ddj-47	744	23	,	,	PUNCT
ddj-47	744	24	as	as	ADV
ddj-47	744	25	well	well	ADV
ddj-47	744	26	as	as	ADP
ddj-47	744	27	a	a	DET
ddj-47	744	28	direct	direct	ADJ
ddj-47	744	29	correlate	correlate	NOUN
ddj-47	744	30	for	for	ADP
ddj-47	744	31	cognitive	cognitive	ADJ
ddj-47	744	32	and	and	CCONJ
ddj-47	744	33	sensory	sensory	ADJ
ddj-47	744	34	resolutions	resolution	NOUN
ddj-47	744	35	.	.	PUNCT
ddj-47	745	1	the	the	DET
ddj-47	745	2	model	model	NOUN
ddj-47	745	3	extends	extend	VERB
ddj-47	745	4	to	to	ADP
ddj-47	745	5	a	a	DET
ddj-47	745	6	model	model	NOUN
ddj-47	745	7	of	of	ADP
ddj-47	745	8	catalyst	catalyst	NOUN
ddj-47	745	9	dynamics	dynamic	NOUN
ddj-47	745	10	if	if	SCONJ
ddj-47	745	11	one	one	NUM
ddj-47	745	12	the	the	DET
ddj-47	745	13	relative	relative	ADJ
ddj-47	745	14	motion	motion	NOUN
ddj-47	745	15	of	of	ADP
ddj-47	745	16	reactant	reactant	NOUN
ddj-47	745	17	molecules	molecule	NOUN
ddj-47	745	18	is	be	AUX
ddj-47	745	19	slow	slow	ADJ
ddj-47	745	20	in	in	ADP
ddj-47	745	21	the	the	DET
ddj-47	745	22	time	time	NOUN
ddj-47	745	23	scale	scale	NOUN
ddj-47	745	24	of	of	ADP
ddj-47	745	25	folding	fold	VERB
ddj-47	745	26	dynamics	dynamic	NOUN
ddj-47	745	27	so	so	SCONJ
ddj-47	745	28	that	that	SCONJ
ddj-47	745	29	adiabaticity	adiabaticity	NOUN
ddj-47	745	30	assumption	assumption	NOUN
ddj-47	745	31	makes	make	VERB
ddj-47	745	32	sense	sense	NOUN
ddj-47	745	33	.	.	PUNCT
ddj-47	746	1	in	in	ADP
ddj-47	746	2	the	the	DET
ddj-47	746	3	following	following	NOUN
ddj-47	746	4	i	i	PRON
ddj-47	746	5	often	often	ADV
ddj-47	746	6	use	use	VERB
ddj-47	746	7	the	the	DET
ddj-47	746	8	basic	basic	ADJ
ddj-47	746	9	data	datum	NOUN
ddj-47	746	10	which	which	PRON
ddj-47	746	11	can	can	AUX
ddj-47	746	12	be	be	AUX
ddj-47	746	13	found	find	VERB
ddj-47	746	14	from	from	ADP
ddj-47	746	15	[	[	X
ddj-47	746	16	13	13	NUM
ddj-47	746	17	]	]	PUNCT
ddj-47	746	18	without	without	ADP
ddj-47	746	19	explicit	explicit	ADJ
ddj-47	746	20	reference	reference	NOUN
ddj-47	746	21	.	.	PUNCT
ddj-47	747	1	4.1	4.1	NUM
ddj-47	747	2	the	the	DET
ddj-47	747	3	model	model	NOUN
ddj-47	747	4	let	let	VERB
ddj-47	747	5	us	we	PRON
ddj-47	747	6	assign	assign	VERB
ddj-47	747	7	potential	potential	ADJ
ddj-47	747	8	energy	energy	NOUN
ddj-47	747	9	to	to	ADP
ddj-47	747	10	the	the	DET
ddj-47	747	11	flux	flux	NOUN
ddj-47	747	12	tube	tube	NOUN
ddj-47	747	13	connecting	connect	VERB
ddj-47	747	14	i	i	PRON
ddj-47	747	15	:	:	PUNCT
ddj-47	747	16	th	th	X
ddj-47	747	17	and	and	CCONJ
ddj-47	747	18	k(i):th	k(i):th	PROPN
ddj-47	747	19	amino	amino	NOUN
ddj-47	747	20	-	-	PUNCT
ddj-47	747	21	acid	acid	NOUN
ddj-47	747	22	and	and	CCONJ
ddj-47	747	23	depending	depend	VERB
ddj-47	747	24	only	only	ADV
ddj-47	747	25	on	on	ADP
ddj-47	747	26	the	the	DET
ddj-47	747	27	distance	distance	NOUN
ddj-47	747	28	ri	ri	NOUN
ddj-47	747	29	,	,	PUNCT
ddj-47	747	30	k(i	k(i	PROPN
ddj-47	747	31	)	)	PUNCT
ddj-47	747	32	.	.	PUNCT
ddj-47	748	1	what	what	PRON
ddj-47	748	2	comes	come	VERB
ddj-47	748	3	in	in	ADP
ddj-47	748	4	mind	mind	NOUN
ddj-47	748	5	first	first	ADV
ddj-47	748	6	is	be	AUX
ddj-47	748	7	the	the	DET
ddj-47	748	8	potential	potential	ADJ
ddj-47	748	9	energy	energy	NOUN
ddj-47	748	10	of	of	ADP
ddj-47	748	11	harmonic	harmonic	ADJ
ddj-47	748	12	oscillator	oscillator	NOUN
ddj-47	748	13	:	:	PUNCT
ddj-47	748	14	v	v	NOUN
ddj-47	748	15	(	(	PUNCT
ddj-47	748	16	r	r	NOUN
ddj-47	748	17	)	)	PUNCT
ddj-47	748	18	=	=	SYM
ddj-47	749	1	kr2	kr2	PROPN
ddj-47	749	2	2	2	NUM
ddj-47	749	3	.	.	PUNCT
ddj-47	750	1	(	(	PUNCT
ddj-47	750	2	4.1	4.1	NUM
ddj-47	750	3	)	)	PUNCT
ddj-47	750	4	k	k	NOUN
ddj-47	750	5	>	>	SYM
ddj-47	750	6	0	0	NUM
ddj-47	750	7	corresponds	correspond	NOUN
ddj-47	750	8	to	to	ADP
ddj-47	750	9	harmonic	harmonic	ADJ
ddj-47	750	10	oscillator	oscillator	NOUN
ddj-47	750	11	.	.	PUNCT
ddj-47	751	1	also	also	ADV
ddj-47	751	2	k	k	X
ddj-47	751	3	<	<	X
ddj-47	751	4	0	0	X
ddj-47	751	5	is	be	AUX
ddj-47	751	6	possible	possible	ADJ
ddj-47	751	7	in	in	ADP
ddj-47	751	8	which	which	DET
ddj-47	751	9	case	case	NOUN
ddj-47	751	10	the	the	DET
ddj-47	751	11	distance	distance	NOUN
ddj-47	751	12	between	between	ADP
ddj-47	751	13	amino	amino	NOUN
ddj-47	751	14	-	-	PUNCT
ddj-47	751	15	acid	acid	NOUN
ddj-47	751	16	and	and	CCONJ
ddj-47	751	17	its	its	PRON
ddj-47	751	18	conjugate	conjugate	NOUN
ddj-47	751	19	tends	tend	VERB
ddj-47	751	20	to	to	PART
ddj-47	751	21	be	be	AUX
ddj-47	751	22	maximized	maximize	VERB
ddj-47	751	23	in	in	ADP
ddj-47	751	24	equilibrium	equilibrium	NOUN
ddj-47	751	25	:	:	PUNCT
ddj-47	751	26	this	this	DET
ddj-47	751	27	option	option	NOUN
ddj-47	751	28	turns	turn	VERB
ddj-47	751	29	out	out	ADP
ddj-47	751	30	to	to	PART
ddj-47	751	31	be	be	AUX
ddj-47	751	32	the	the	DET
ddj-47	751	33	more	more	ADV
ddj-47	751	34	plausible	plausible	ADJ
ddj-47	751	35	one	one	NOUN
ddj-47	751	36	and	and	CCONJ
ddj-47	751	37	conforms	conform	VERB
ddj-47	751	38	also	also	ADV
ddj-47	751	39	with	with	ADP
ddj-47	751	40	the	the	DET
ddj-47	751	41	notion	notion	NOUN
ddj-47	751	42	of	of	ADP
ddj-47	751	43	quantum	quantum	ADJ
ddj-47	751	44	criticality	criticality	NOUN
ddj-47	751	45	.	.	PUNCT
ddj-47	752	1	besides	besides	SCONJ
ddj-47	752	2	this	this	PRON
ddj-47	752	3	there	there	PRON
ddj-47	752	4	is	be	VERB
ddj-47	752	5	the	the	DET
ddj-47	752	6	constraint	constraint	NOUN
ddj-47	752	7	that	that	PRON
ddj-47	752	8	the	the	DET
ddj-47	752	9	distances	distance	NOUN
ddj-47	752	10	between	between	ADP
ddj-47	752	11	amino	amino	NOUN
ddj-47	752	12	-	-	PUNCT
ddj-47	752	13	acid	acid	NOUN
ddj-47	752	14	and	and	CCONJ
ddj-47	752	15	its	its	PRON
ddj-47	752	16	follower	follower	NOUN
ddj-47	752	17	are	be	AUX
ddj-47	752	18	constant	constant	ADJ
ddj-47	752	19	:	:	PUNCT
ddj-47	752	20	ri+1,i	ri+1,i	PROPN
ddj-47	752	21	=	=	PROPN
ddj-47	752	22	r	r	NOUN
ddj-47	752	23	.	.	PUNCT
ddj-47	753	1	using	use	VERB
ddj-47	753	2	lagrange	lagrange	NOUN
ddj-47	753	3	multipliers	multiplier	NOUN
ddj-47	753	4	this	this	PRON
ddj-47	753	5	gives	give	VERB
ddj-47	753	6	rise	rise	NOUN
ddj-47	753	7	to	to	ADP
ddj-47	753	8	the	the	DET
ddj-47	753	9	action	action	NOUN
ddj-47	753	10	l	l	NOUN
ddj-47	753	11	=	=	PUNCT
ddj-47	753	12	−e	−e	NOUN
ddj-47	753	13	=	=	SYM
ddj-47	753	14	−k	−k	PROPN
ddj-47	753	15	2	2	NUM
ddj-47	753	16	∑	∑	PROPN
ddj-47	753	17	i	i	PRON
ddj-47	753	18	r2i	r2i	NOUN
ddj-47	753	19	,	,	PUNCT
ddj-47	753	20	k(i	k(i	NOUN
ddj-47	753	21	)	)	PUNCT
ddj-47	754	1	+	+	CCONJ
ddj-47	754	2	∑	∑	PUNCT
ddj-47	754	3	i	i	PRON
ddj-47	754	4	λir	λir	VERB
ddj-47	754	5	2	2	NUM
ddj-47	754	6	i+1,i	i+1,i	NOUN
ddj-47	754	7	.	.	PUNCT
ddj-47	755	1	(	(	PUNCT
ddj-47	755	2	4.2	4.2	NUM
ddj-47	755	3	)	)	PUNCT
ddj-47	755	4	energy	energy	NOUN
ddj-47	755	5	is	be	AUX
ddj-47	755	6	the	the	DET
ddj-47	755	7	negative	negative	ADJ
ddj-47	755	8	of	of	ADP
ddj-47	755	9	this	this	DET
ddj-47	755	10	action	action	NOUN
ddj-47	755	11	for	for	ADP
ddj-47	755	12	static	static	ADJ
ddj-47	755	13	solutions	solution	NOUN
ddj-47	755	14	.	.	PUNCT
ddj-47	756	1	one	one	PRON
ddj-47	756	2	could	could	AUX
ddj-47	756	3	consider	consider	VERB
ddj-47	756	4	also	also	ADV
ddj-47	756	5	adding	add	VERB
ddj-47	756	6	kinetic	kinetic	ADJ
ddj-47	756	7	term	term	NOUN
ddj-47	756	8	to	to	ADP
ddj-47	756	9	this	this	DET
ddj-47	756	10	action	action	NOUN
ddj-47	756	11	to	to	PART
ddj-47	756	12	describe	describe	VERB
ddj-47	756	13	the	the	DET
ddj-47	756	14	dynamics	dynamic	NOUN
ddj-47	756	15	of	of	ADP
ddj-47	756	16	folding	folding	NOUN
ddj-47	756	17	.	.	PUNCT
ddj-47	757	1	this	this	DET
ddj-47	757	2	action	action	NOUN
ddj-47	757	3	is	be	AUX
ddj-47	757	4	hoped	hope	VERB
ddj-47	757	5	to	to	PART
ddj-47	757	6	give	give	VERB
ddj-47	757	7	only	only	ADV
ddj-47	757	8	a	a	DET
ddj-47	757	9	qualitative	qualitative	ADJ
ddj-47	757	10	view	view	NOUN
ddj-47	757	11	about	about	ADP
ddj-47	757	12	folding	fold	VERB
ddj-47	757	13	and	and	CCONJ
ddj-47	757	14	the	the	DET
ddj-47	757	15	ordinary	ordinary	ADJ
ddj-47	757	16	chemical	chemical	ADJ
ddj-47	757	17	interactions	interaction	NOUN
ddj-47	757	18	should	should	AUX
ddj-47	757	19	fix	fix	VERB
ddj-47	757	20	the	the	DET
ddj-47	757	21	details	detail	NOUN
ddj-47	757	22	of	of	ADP
ddj-47	757	23	the	the	DET
ddj-47	757	24	folding	folding	NOUN
ddj-47	757	25	and	and	CCONJ
ddj-47	757	26	select	select	ADJ
ddj-47	757	27	between	between	ADP
ddj-47	757	28	different	different	ADJ
ddj-47	757	29	folding	folding	NOUN
ddj-47	757	30	patterns	pattern	NOUN
ddj-47	757	31	.	.	PUNCT
ddj-47	758	1	several	several	ADJ
ddj-47	758	2	amino	amino	NOUN
ddj-47	758	3	-	-	PUNCT
ddj-47	758	4	acid	acid	NOUN
ddj-47	758	5	chains	chain	NOUN
ddj-47	758	6	could	could	AUX
ddj-47	758	7	be	be	AUX
ddj-47	758	8	present	present	ADJ
ddj-47	758	9	and	and	CCONJ
ddj-47	758	10	have	have	VERB
ddj-47	758	11	mutual	mutual	ADJ
ddj-47	758	12	long	long	ADJ
ddj-47	758	13	range	range	NOUN
ddj-47	758	14	interactions	interaction	NOUN
ddj-47	758	15	.	.	PUNCT
ddj-47	759	1	if	if	SCONJ
ddj-47	759	2	n	n	NUM
ddj-47	759	3	−	−	PROPN
ddj-47	759	4	h	h	NOUN
ddj-47	759	5	and	and	CCONJ
ddj-47	759	6	o	o	NOUN
ddj-47	759	7	=	=	NOUN
ddj-47	759	8	both	both	PRON
ddj-47	759	9	can	can	AUX
ddj-47	759	10	be	be	AUX
ddj-47	759	11	connected	connect	VERB
ddj-47	759	12	by	by	ADP
ddj-47	759	13	flux	flux	PROPN
ddj-47	759	14	tubes	tubes	PROPN
ddj-47	759	15	,	,	PUNCT
ddj-47	759	16	each	each	DET
ddj-47	759	17	amino	amino	NOUN
ddj-47	759	18	-	-	PUNCT
ddj-47	759	19	acid	acid	NOUN
ddj-47	759	20	gives	give	VERB
ddj-47	759	21	two	two	NUM
ddj-47	759	22	terms	term	NOUN
ddj-47	759	23	to	to	ADP
ddj-47	759	24	the	the	DET
ddj-47	759	25	energy	energy	NOUN
ddj-47	759	26	corresponding	correspond	VERB
ddj-47	759	27	to	to	ADP
ddj-47	759	28	the	the	DET
ddj-47	759	29	flux	flux	NOUN
ddj-47	759	30	tube	tube	NOUN
ddj-47	759	31	beginning	begin	VERB
ddj-47	759	32	from	from	ADP
ddj-47	759	33	n	n	PRON
ddj-47	759	34	−h	−h	ADJ
ddj-47	759	35	and	and	CCONJ
ddj-47	759	36	flux	flux	NOUN
ddj-47	759	37	tube	tube	NOUN
ddj-47	759	38	ending	end	VERB
ddj-47	759	39	at	at	ADP
ddj-47	759	40	o	o	NOUN
ddj-47	759	41	=	=	NOUN
ddj-47	759	42	.	.	PUNCT
ddj-47	760	1	the	the	DET
ddj-47	760	2	extremals	extremal	NOUN
ddj-47	760	3	of	of	ADP
ddj-47	760	4	this	this	DET
ddj-47	760	5	action	action	NOUN
ddj-47	760	6	satisfy	satisfy	NOUN
ddj-47	760	7	∂l	∂l	VERB
ddj-47	760	8	∂rki	∂rki	NUM
ddj-47	760	9	=	=	NOUN
ddj-47	760	10	0	0	NUM
ddj-47	760	11	,	,	PUNCT
ddj-47	760	12	i	i	PRON
ddj-47	760	13	=	=	NOUN
ddj-47	760	14	1	1	NUM
ddj-47	760	15	,	,	PUNCT
ddj-47	760	16	...	...	PUNCT
ddj-47	760	17	,	,	PUNCT
ddj-47	760	18	n	n	PROPN
ddj-47	760	19	.	.	PUNCT
ddj-47	761	1	(	(	PUNCT
ddj-47	761	2	4.3	4.3	NUM
ddj-47	761	3	)	)	PUNCT
ddj-47	761	4	1	1	NUM
ddj-47	761	5	.	.	PUNCT
ddj-47	762	1	if	if	SCONJ
ddj-47	762	2	there	there	PRON
ddj-47	762	3	is	be	VERB
ddj-47	762	4	only	only	ADV
ddj-47	762	5	single	single	ADJ
ddj-47	762	6	flux	flux	NOUN
ddj-47	762	7	tube	tube	NOUN
ddj-47	762	8	per	per	ADP
ddj-47	762	9	amino	amino	NOUN
ddj-47	762	10	-	-	PUNCT
ddj-47	762	11	acid	acid	NOUN
ddj-47	762	12	,	,	PUNCT
ddj-47	762	13	this	this	PRON
ddj-47	762	14	gives	give	VERB
ddj-47	762	15	the	the	DET
ddj-47	762	16	conditions	condition	NOUN
ddj-47	762	17	λi+1ri+1,i	λi+1ri+1,i	NOUN
ddj-47	762	18	−	−	NOUN
ddj-47	762	19	λi−1ri	λi−1ri	NUM
ddj-47	762	20	,	,	PUNCT
ddj-47	762	21	i−1	i−1	PROPN
ddj-47	762	22	=	=	SYM
ddj-47	762	23	−kri	−kri	NOUN
ddj-47	762	24	,	,	PUNCT
ddj-47	762	25	k(i	k(i	PROPN
ddj-47	762	26	)	)	PUNCT
ddj-47	762	27	,	,	PUNCT
ddj-47	762	28	rj+1,j	rj+1,j	NOUN
ddj-47	762	29	=	=	NOUN
ddj-47	762	30	r	r	NOUN
ddj-47	762	31	.	.	PUNCT
ddj-47	763	1	(	(	PUNCT
ddj-47	763	2	4.4	4.4	NUM
ddj-47	763	3	)	)	PUNCT
ddj-47	763	4	the	the	DET
ddj-47	763	5	geometric	geometric	ADJ
ddj-47	763	6	content	content	NOUN
ddj-47	763	7	of	of	ADP
ddj-47	763	8	these	these	DET
ddj-47	763	9	conditions	condition	NOUN
ddj-47	763	10	is	be	AUX
ddj-47	763	11	that	that	SCONJ
ddj-47	763	12	the	the	DET
ddj-47	763	13	vectors	vector	NOUN
ddj-47	763	14	ri	ri	PROPN
ddj-47	763	15	,	,	PUNCT
ddj-47	763	16	k(i	k(i	PROPN
ddj-47	763	17	)	)	PUNCT
ddj-47	763	18	,	,	PUNCT
ddj-47	763	19	ri+1,i	ri+1,i	PROPN
ddj-47	763	20	,	,	PUNCT
ddj-47	763	21	and	and	CCONJ
ddj-47	763	22	ri	ri	PROPN
ddj-47	763	23	,	,	PUNCT
ddj-47	763	24	i−1	i−1	PROPN
ddj-47	763	25	are	be	AUX
ddj-47	763	26	in	in	ADP
ddj-47	763	27	the	the	DET
ddj-47	763	28	same	same	ADJ
ddj-47	763	29	plane	plane	NOUN
ddj-47	763	30	.	.	PUNCT
ddj-47	764	1	2	2	X
ddj-47	764	2	.	.	X
ddj-47	764	3	if	if	SCONJ
ddj-47	764	4	there	there	PRON
ddj-47	764	5	are	be	VERB
ddj-47	764	6	two	two	NUM
ddj-47	764	7	flux	flux	NOUN
ddj-47	764	8	tubes	tube	NOUN
ddj-47	764	9	per	per	ADP
ddj-47	764	10	amino	amino	NOUN
ddj-47	764	11	-	-	PUNCT
ddj-47	764	12	acid	acid	NOUN
ddj-47	764	13	(=	(=	NOUN
ddj-47	764	14	oi	oi	PROPN
ddj-47	764	15	−−(n	−−(n	NUM
ddj-47	764	16	−h)k1(i	−h)k1(i	NUM
ddj-47	764	17	)	)	PUNCT
ddj-47	764	18	and	and	CCONJ
ddj-47	764	19	(	(	PUNCT
ddj-47	764	20	n	n	PRON
ddj-47	764	21	−h)i	−h)i	VERB
ddj-47	764	22	−−(o	−−(o	NUM
ddj-47	764	23	=)	=)	PROPN
ddj-47	764	24	k2(i	k2(i	PROPN
ddj-47	764	25	)	)	PUNCT
ddj-47	764	26	)	)	PUNCT
ddj-47	765	1	λi+1ri+1,i	λi+1ri+1,i	NOUN
ddj-47	765	2	−	−	PROPN
ddj-47	765	3	λi−1ri	λi−1ri	NUM
ddj-47	765	4	,	,	PUNCT
ddj-47	765	5	i−1	i−1	PROPN
ddj-47	765	6	=	=	PUNCT
ddj-47	765	7	−k[ri	−k[ri	PROPN
ddj-47	765	8	,	,	PUNCT
ddj-47	765	9	k1(i	k1(i	NOUN
ddj-47	765	10	)	)	PUNCT
ddj-47	765	11	+	+	NUM
ddj-47	765	12	ri	ri	PROPN
ddj-47	765	13	,	,	PUNCT
ddj-47	765	14	k2(i	k2(i	PROPN
ddj-47	765	15	)	)	PUNCT
ddj-47	765	16	]	]	PUNCT
ddj-47	765	17	,	,	PUNCT
ddj-47	765	18	rj+1,j	rj+1,j	NOUN
ddj-47	765	19	=	=	NOUN
ddj-47	765	20	r	r	NOUN
ddj-47	765	21	.	.	PUNCT
ddj-47	766	1	(	(	PUNCT
ddj-47	766	2	4.5	4.5	NUM
ddj-47	766	3	)	)	PUNCT
ddj-47	766	4	in	in	ADP
ddj-47	766	5	this	this	PRON
ddj-47	766	6	the	the	DET
ddj-47	766	7	resultant	resultant	NOUN
ddj-47	766	8	of	of	ADP
ddj-47	766	9	the	the	DET
ddj-47	766	10	vectors	vector	NOUN
ddj-47	766	11	ri	ri	PROPN
ddj-47	766	12	,	,	PUNCT
ddj-47	766	13	k1(i	k1(i	PROPN
ddj-47	766	14	)	)	PUNCT
ddj-47	766	15	+	+	NUM
ddj-47	766	16	ri	ri	PROPN
ddj-47	766	17	,	,	PUNCT
ddj-47	766	18	k2(i	k2(i	PROPN
ddj-47	766	19	)	)	PUNCT
ddj-47	766	20	would	would	AUX
ddj-47	766	21	be	be	AUX
ddj-47	766	22	in	in	ADP
ddj-47	766	23	the	the	DET
ddj-47	766	24	plane	plane	NOUN
ddj-47	766	25	determined	determine	VERB
ddj-47	766	26	by	by	ADP
ddj-47	766	27	ri+1,i	ri+1,i	PROPN
ddj-47	766	28	and	and	CCONJ
ddj-47	766	29	ri	ri	PROPN
ddj-47	766	30	,	,	PUNCT
ddj-47	766	31	i−1	i−1	PROPN
ddj-47	766	32	.	.	PUNCT
ddj-47	766	33	note	note	VERB
ddj-47	766	34	that	that	SCONJ
ddj-47	766	35	due	due	ADP
ddj-47	766	36	to	to	ADP
ddj-47	766	37	the	the	DET
ddj-47	766	38	lack	lack	NOUN
ddj-47	766	39	of	of	ADP
ddj-47	766	40	n	n	NOUN
ddj-47	766	41	−h	−h	VERB
ddj-47	766	42	in	in	ADV
ddj-47	766	43	pro	pro	ADJ
ddj-47	766	44	it	it	PRON
ddj-47	766	45	can	can	AUX
ddj-47	766	46	happen	happen	VERB
ddj-47	766	47	that	that	SCONJ
ddj-47	766	48	there	there	PRON
ddj-47	766	49	is	be	VERB
ddj-47	766	50	only	only	ADV
ddj-47	766	51	single	single	ADJ
ddj-47	766	52	flux	flux	NOUN
ddj-47	766	53	tube	tube	NOUN
ddj-47	766	54	per	per	ADP
ddj-47	766	55	amino	amino	NOUN
ddj-47	766	56	-	-	PUNCT
ddj-47	766	57	acid	acid	NOUN
ddj-47	766	58	.	.	PUNCT
ddj-47	767	1	long	long	ADJ
ddj-47	767	2	range	range	NOUN
ddj-47	767	3	interactions	interaction	NOUN
ddj-47	767	4	of	of	ADP
ddj-47	767	5	amino	amino	NOUN
ddj-47	767	6	-	-	PUNCT
ddj-47	767	7	acids	acid	NOUN
ddj-47	767	8	with	with	ADP
ddj-47	767	9	their	their	PRON
ddj-47	767	10	conjugates	conjugate	NOUN
ddj-47	767	11	would	would	AUX
ddj-47	767	12	dictate	dictate	VERB
ddj-47	767	13	the	the	DET
ddj-47	767	14	local	local	ADJ
ddj-47	767	15	folding	folding	NOUN
ddj-47	767	16	of	of	ADP
ddj-47	767	17	the	the	DET
ddj-47	767	18	amino	amino	NOUN
ddj-47	767	19	-	-	PUNCT
ddj-47	767	20	acid	acid	NOUN
ddj-47	767	21	chain	chain	NOUN
ddj-47	767	22	but	but	CCONJ
ddj-47	767	23	extremum	extremum	ADJ
ddj-47	767	24	property	property	NOUN
ddj-47	767	25	alone	alone	ADV
ddj-47	767	26	does	do	AUX
ddj-47	767	27	not	not	PART
ddj-47	767	28	say	say	VERB
ddj-47	767	29	much	much	ADJ
ddj-47	767	30	about	about	ADP
ddj-47	767	31	the	the	DET
ddj-47	767	32	lengths	length	NOUN
ddj-47	767	33	of	of	ADP
ddj-47	767	34	the	the	DET
ddj-47	767	35	flux	flux	PROPN
ddj-47	767	36	tubes	tubes	PROPN
ddj-47	767	37	.	.	PUNCT
ddj-47	768	1	suppose	suppose	VERB
ddj-47	768	2	that	that	SCONJ
ddj-47	768	3	ri	ri	PROPN
ddj-47	768	4	,	,	PUNCT
ddj-47	768	5	ri	ri	PROPN
ddj-47	768	6	,	,	PUNCT
ddj-47	768	7	k(i	k(i	PROPN
ddj-47	768	8	)	)	PUNCT
ddj-47	768	9	,	,	PUNCT
ddj-47	768	10	ri	ri	PROPN
ddj-47	768	11	,	,	PUNCT
ddj-47	768	12	i−1	i−1	PROPN
ddj-47	768	13	,	,	PUNCT
ddj-47	768	14	λi−1	λi−1	PROPN
ddj-47	768	15	are	be	AUX
ddj-47	768	16	known	know	VERB
ddj-47	768	17	.	.	PUNCT
ddj-47	769	1	can	can	AUX
ddj-47	769	2	one	one	NUM
ddj-47	769	3	solve	solve	VERB
ddj-47	769	4	λi+1	λi+1	NOUN
ddj-47	769	5	and	and	CCONJ
ddj-47	769	6	ri+1,i	ri+1,i	PROPN
ddj-47	769	7	?	?	PUNCT
ddj-47	770	1	since	since	SCONJ
ddj-47	770	2	the	the	DET
ddj-47	770	3	vectors	vector	NOUN
ddj-47	770	4	are	be	AUX
ddj-47	770	5	in	in	ADP
ddj-47	770	6	the	the	DET
ddj-47	770	7	same	same	ADJ
ddj-47	770	8	plane	plane	NOUN
ddj-47	770	9	,	,	PUNCT
ddj-47	770	10	the	the	DET
ddj-47	770	11	linear	linear	ADJ
ddj-47	770	12	dependence	dependence	NOUN
ddj-47	770	13	does	do	AUX
ddj-47	770	14	not	not	PART
ddj-47	770	15	fix	fix	VERB
ddj-47	770	16	the	the	DET
ddj-47	770	17	direction	direction	NOUN
ddj-47	770	18	of	of	ADP
ddj-47	770	19	ri+1	ri+1	PROPN
ddj-47	770	20	in	in	ADP
ddj-47	770	21	this	this	DET
ddj-47	770	22	plane	plane	NOUN
ddj-47	770	23	but	but	CCONJ
ddj-47	770	24	only	only	ADV
ddj-47	770	25	the	the	DET
ddj-47	770	26	value	value	NOUN
ddj-47	770	27	of	of	ADP
ddj-47	770	28	λi	λi	NOUN
ddj-47	770	29	in	in	ADP
ddj-47	770	30	this	this	DET
ddj-47	770	31	plane	plane	NOUN
ddj-47	770	32	once	once	ADV
ddj-47	770	33	ri+1	ri+1	PROPN
ddj-47	770	34	is	be	AUX
ddj-47	770	35	fixed	fix	VERB
ddj-47	770	36	or	or	CCONJ
ddj-47	770	37	vice	vice	NOUN
ddj-47	770	38	versa	versa	ADV
ddj-47	770	39	.	.	PUNCT
ddj-47	771	1	therefore	therefore	ADV
ddj-47	771	2	the	the	DET
ddj-47	771	3	direction	direction	NOUN
ddj-47	771	4	in	in	ADP
ddj-47	771	5	the	the	DET
ddj-47	771	6	plane	plane	NOUN
ddj-47	771	7	remains	remain	VERB
ddj-47	771	8	un	un	ADJ
ddj-47	771	9	-	-	ADJ
ddj-47	771	10	determined	determined	ADJ
ddj-47	771	11	and	and	CCONJ
ddj-47	771	12	equations	equation	NOUN
ddj-47	771	13	of	of	ADP
ddj-47	771	14	motion	motion	NOUN
ddj-47	771	15	are	be	AUX
ddj-47	771	16	not	not	PART
ddj-47	771	17	fully	fully	ADV
ddj-47	771	18	deterministic	deterministic	ADJ
ddj-47	771	19	as	as	ADV
ddj-47	771	20	far	far	ADV
ddj-47	771	21	as	as	SCONJ
ddj-47	771	22	extremals	extremal	NOUN
ddj-47	771	23	are	be	AUX
ddj-47	771	24	considered	consider	VERB
ddj-47	771	25	.	.	PUNCT
ddj-47	772	1	absolute	absolute	ADJ
ddj-47	772	2	minimization	minimization	NOUN
ddj-47	772	3	however	however	ADV
ddj-47	772	4	eliminates	eliminate	VERB
ddj-47	772	5	this	this	DET
ddj-47	772	6	non	non	NOUN
ddj-47	772	7	-	-	NOUN
ddj-47	772	8	determinism	determinism	NOUN
ddj-47	772	9	by	by	ADP
ddj-47	772	10	maximizing	maximize	VERB
ddj-47	772	11	the	the	DET
ddj-47	772	12	distances	distance	NOUN
ddj-47	772	13	ri	ri	PROPN
ddj-47	772	14	,	,	PUNCT
ddj-47	772	15	i(k	i(k	PROPN
ddj-47	772	16	)	)	PUNCT
ddj-47	772	17	for	for	ADP
ddj-47	772	18	k	k	PROPN
ddj-47	772	19	>	>	SYM
ddj-47	772	20	0	0	NUM
ddj-47	772	21	option	option	NOUN
ddj-47	772	22	.	.	PUNCT
ddj-47	773	1	the	the	DET
ddj-47	773	2	expressions	expression	NOUN
ddj-47	773	3	for	for	ADP
ddj-47	773	4	λi	λi	ADP
ddj-47	773	5	result	result	NOUN
ddj-47	773	6	from	from	ADP
ddj-47	773	7	elementary	elementary	ADJ
ddj-47	773	8	linear	linear	PROPN
ddj-47	773	9	algebra	algebra	PROPN
ddj-47	773	10	by	by	ADP
ddj-47	773	11	introducing	introduce	VERB
ddj-47	773	12	dual	dual	ADJ
ddj-47	773	13	basis	basis	NOUN
ddj-47	773	14	of	of	ADP
ddj-47	773	15	non	non	ADJ
ddj-47	773	16	-	-	ADJ
ddj-47	773	17	orthogonal	orthogonal	ADJ
ddj-47	773	18	basis	basis	NOUN
ddj-47	773	19	defined	define	VERB
ddj-47	773	20	by	by	ADP
ddj-47	773	21	ri	ri	PROPN
ddj-47	773	22	,	,	PUNCT
ddj-47	773	23	k(i	k(i	PROPN
ddj-47	773	24	)	)	PUNCT
ddj-47	773	25	and	and	CCONJ
ddj-47	773	26	ri	ri	PROPN
ddj-47	773	27	,	,	PUNCT
ddj-47	773	28	i−1	i−1	PROPN
ddj-47	773	29	.	.	PROPN
ddj-47	773	30	issn	issn	PROPN
ddj-47	773	31	:	:	PUNCT
ddj-47	773	32	2159	2159	NUM
ddj-47	773	33	-	-	SYM
ddj-47	773	34	0465	0465	NUM
ddj-47	773	35	dna	dna	PROPN
ddj-47	773	36	decipher	decipher	PROPN
ddj-47	773	37	journal	journal	PROPN
ddj-47	773	38	june	june	PROPN
ddj-47	773	39	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	773	40	published	publish	VERB
ddj-47	773	41	by	by	ADP
ddj-47	773	42	quantumdream	quantumdream	PROPN
ddj-47	773	43	,	,	PUNCT
ddj-47	773	44	inc	inc	PROPN
ddj-47	773	45	.	.	PROPN
ddj-47	773	46	dna	dna	PROPN
ddj-47	773	47	decipher	decipher	PROPN
ddj-47	773	48	journal	journal	NOUN
ddj-47	773	49	|	|	ADV
ddj-47	773	50	may	may	AUX
ddj-47	773	51	2013	2013	NUM
ddj-47	773	52	|	|	ADV
ddj-47	773	53	volume	volume	NOUN
ddj-47	773	54	3	3	NUM
ddj-47	773	55	|	|	NOUN
ddj-47	773	56	issue	issue	VERB
ddj-47	773	57	1	1	NUM
ddj-47	773	58	|	|	ADV
ddj-47	773	59	pp	pp	ADJ
ddj-47	773	60	.	.	PUNCT
ddj-47	774	1	58	58	NUM
ddj-47	774	2	-	-	SYM
ddj-47	774	3	88	88	NUM
ddj-47	774	4	81	81	NUM
ddj-47	774	5	pitkänen	pitkänen	NOUN
ddj-47	774	6	,	,	PUNCT
ddj-47	774	7	m.	m.	NOUN
ddj-47	774	8	,	,	PUNCT
ddj-47	774	9	a	a	DET
ddj-47	774	10	model	model	NOUN
ddj-47	774	11	for	for	ADP
ddj-47	774	12	protein	protein	NOUN
ddj-47	774	13	folding	folding	NOUN
ddj-47	774	14	and	and	CCONJ
ddj-47	774	15	biocatalysis	biocatalysis	NOUN
ddj-47	774	16	1	1	NUM
ddj-47	774	17	.	.	PUNCT
ddj-47	775	1	in	in	ADP
ddj-47	775	2	the	the	DET
ddj-47	775	3	case	case	NOUN
ddj-47	775	4	that	that	SCONJ
ddj-47	775	5	there	there	PRON
ddj-47	775	6	is	be	VERB
ddj-47	775	7	single	single	ADJ
ddj-47	775	8	flux	flux	NOUN
ddj-47	775	9	tube	tube	NOUN
ddj-47	775	10	per	per	ADP
ddj-47	775	11	amino	amino	NOUN
ddj-47	775	12	-	-	PUNCT
ddj-47	775	13	acid	acid	NOUN
ddj-47	775	14	,	,	PUNCT
ddj-47	775	15	one	one	NUM
ddj-47	775	16	has	have	VERB
ddj-47	775	17	λi+1	λi+1	NOUN
ddj-47	775	18	=	=	SYM
ddj-47	775	19	−kei+1	−kei+1	PRON
ddj-47	775	20	·	·	PUNCT
ddj-47	775	21	ri	ri	PROPN
ddj-47	775	22	,	,	PUNCT
ddj-47	775	23	k(i	k(i	PROPN
ddj-47	775	24	)	)	PUNCT
ddj-47	775	25	,	,	PUNCT
ddj-47	775	26	λi−1	λi−1	PROPN
ddj-47	775	27	=	=	SYM
ddj-47	775	28	−kei−1	−kei−1	PROPN
ddj-47	775	29	·	·	PUNCT
ddj-47	775	30	ri	ri	PROPN
ddj-47	775	31	,	,	PUNCT
ddj-47	775	32	k(i	k(i	PROPN
ddj-47	775	33	)	)	PUNCT
ddj-47	775	34	,	,	PUNCT
ddj-47	775	35	ei+1	ei+1	X
ddj-47	775	36	·	·	PUNCT
ddj-47	775	37	ri+1,i	ri+1,i	PROPN
ddj-47	775	38	)	)	PUNCT
ddj-47	776	1	=	=	SYM
ddj-47	776	2	1	1	NUM
ddj-47	776	3	,	,	PUNCT
ddj-47	776	4	ei+1	ei+1	X
ddj-47	776	5	·	·	PUNCT
ddj-47	776	6	ri	ri	PROPN
ddj-47	776	7	,	,	PUNCT
ddj-47	776	8	i−1	i−1	PROPN
ddj-47	776	9	)	)	PUNCT
ddj-47	776	10	=	=	SYM
ddj-47	776	11	0	0	NUM
ddj-47	776	12	,	,	PUNCT
ddj-47	776	13	ei−1	ei−1	PROPN
ddj-47	776	14	·	·	SYM
ddj-47	776	15	ri+1,i	ri+1,i	PROPN
ddj-47	776	16	)	)	PUNCT
ddj-47	777	1	=	=	SYM
ddj-47	777	2	0	0	NUM
ddj-47	777	3	,	,	PUNCT
ddj-47	777	4	ei−1	ei−1	PROPN
ddj-47	777	5	·	·	PUNCT
ddj-47	777	6	ri	ri	PROPN
ddj-47	777	7	,	,	PUNCT
ddj-47	777	8	i−1	i−1	PROPN
ddj-47	777	9	)	)	PUNCT
ddj-47	777	10	=	=	SYM
ddj-47	777	11	1	1	X
ddj-47	777	12	.	.	PUNCT
ddj-47	778	1	(	(	PUNCT
ddj-47	778	2	4.6	4.6	NUM
ddj-47	778	3	)	)	PUNCT
ddj-47	778	4	the	the	DET
ddj-47	778	5	non	non	NOUN
ddj-47	778	6	-	-	NOUN
ddj-47	778	7	determinism	determinism	NOUN
ddj-47	778	8	does	do	AUX
ddj-47	778	9	not	not	PART
ddj-47	778	10	make	make	VERB
ddj-47	778	11	it	it	PRON
ddj-47	778	12	easy	easy	ADJ
ddj-47	778	13	to	to	PART
ddj-47	778	14	find	find	VERB
ddj-47	778	15	absolute	absolute	ADJ
ddj-47	778	16	minimum	minimum	NOUN
ddj-47	778	17	since	since	SCONJ
ddj-47	778	18	non	non	ADJ
ddj-47	778	19	-	-	NOUN
ddj-47	778	20	determinism	determinism	ADJ
ddj-47	778	21	corresponds	correspond	NOUN
ddj-47	778	22	to	to	ADP
ddj-47	778	23	circle	circle	NOUN
ddj-47	778	24	(	(	PUNCT
ddj-47	778	25	s1)2n	s1)2n	PROPN
ddj-47	778	26	for	for	ADP
ddj-47	778	27	amino	amino	NOUN
ddj-47	778	28	-	-	PUNCT
ddj-47	778	29	acid	acid	NOUN
ddj-47	778	30	sequence	sequence	NOUN
ddj-47	778	31	with	with	ADP
ddj-47	778	32	n	n	ADP
ddj-47	778	33	flux	flux	NOUN
ddj-47	778	34	tube	tube	NOUN
ddj-47	778	35	pairings	pairing	NOUN
ddj-47	778	36	.	.	PUNCT
ddj-47	779	1	these	these	DET
ddj-47	779	2	conditions	condition	NOUN
ddj-47	779	3	do	do	AUX
ddj-47	779	4	not	not	PART
ddj-47	779	5	make	make	VERB
ddj-47	779	6	sense	sense	NOUN
ddj-47	779	7	when	when	SCONJ
ddj-47	779	8	ri+1,i	ri+1,i	PROPN
ddj-47	779	9	)	)	PUNCT
ddj-47	779	10	and	and	CCONJ
ddj-47	779	11	ri	ri	PROPN
ddj-47	779	12	,	,	PUNCT
ddj-47	779	13	i−1	i−1	PROPN
ddj-47	779	14	)	)	PUNCT
ddj-47	779	15	are	be	AUX
ddj-47	779	16	parallel	parallel	VERB
ddj-47	779	17	:	:	PUNCT
ddj-47	779	18	in	in	ADP
ddj-47	779	19	this	this	DET
ddj-47	779	20	case	case	NOUN
ddj-47	779	21	the	the	DET
ddj-47	779	22	force	force	NOUN
ddj-47	779	23	must	must	AUX
ddj-47	779	24	be	be	AUX
ddj-47	779	25	parallel	parallel	ADJ
ddj-47	779	26	to	to	ADP
ddj-47	779	27	ri+1,i	ri+1,i	PROPN
ddj-47	779	28	)	)	PUNCT
ddj-47	779	29	.	.	PUNCT
ddj-47	780	1	2	2	X
ddj-47	780	2	.	.	X
ddj-47	780	3	for	for	ADP
ddj-47	780	4	two	two	NUM
ddj-47	780	5	flux	flux	NOUN
ddj-47	780	6	tubes	tube	NOUN
ddj-47	780	7	per	per	ADP
ddj-47	780	8	amino	amino	NOUN
ddj-47	780	9	-	-	PUNCT
ddj-47	780	10	acid	acid	NOUN
ddj-47	780	11	one	one	NOUN
ddj-47	780	12	has	have	VERB
ddj-47	780	13	a	a	DET
ddj-47	780	14	slightly	slightly	ADV
ddj-47	780	15	more	more	ADV
ddj-47	780	16	complex	complex	ADJ
ddj-47	780	17	expression	expression	NOUN
ddj-47	780	18	for	for	ADP
ddj-47	780	19	these	these	DET
ddj-47	780	20	conditions	condition	NOUN
ddj-47	780	21	:	:	PUNCT
ddj-47	780	22	λi+1	λi+1	NOUN
ddj-47	780	23	=	=	PUNCT
ddj-47	780	24	−kei+1	−kei+1	X
ddj-47	780	25	·	·	PUNCT
ddj-47	781	1	[	[	X
ddj-47	781	2	ri	ri	PROPN
ddj-47	781	3	,	,	PUNCT
ddj-47	781	4	k1(i	k1(i	PROPN
ddj-47	781	5	)	)	PUNCT
ddj-47	781	6	+	+	NUM
ddj-47	781	7	ri	ri	PROPN
ddj-47	781	8	,	,	PUNCT
ddj-47	781	9	k2(i	k2(i	PROPN
ddj-47	781	10	)	)	PUNCT
ddj-47	781	11	]	]	PUNCT
ddj-47	781	12	,	,	PUNCT
ddj-47	781	13	λi−1	λi−1	PROPN
ddj-47	781	14	=	=	SYM
ddj-47	781	15	−kei−1	−kei−1	X
ddj-47	781	16	·	·	PUNCT
ddj-47	782	1	[	[	X
ddj-47	782	2	ri	ri	X
ddj-47	782	3	,	,	PUNCT
ddj-47	782	4	k1(i	k1(i	PROPN
ddj-47	782	5	)	)	PUNCT
ddj-47	782	6	+	+	NUM
ddj-47	782	7	ri	ri	PROPN
ddj-47	782	8	,	,	PUNCT
ddj-47	782	9	k2(i	k2(i	PROPN
ddj-47	782	10	)	)	PUNCT
ddj-47	782	11	]	]	PUNCT
ddj-47	782	12	,	,	PUNCT
ddj-47	782	13	ei+1	ei+1	X
ddj-47	782	14	·	·	PUNCT
ddj-47	782	15	ri+1,i	ri+1,i	PROPN
ddj-47	782	16	)	)	PUNCT
ddj-47	783	1	=	=	SYM
ddj-47	783	2	1	1	NUM
ddj-47	783	3	,	,	PUNCT
ddj-47	783	4	ei+1	ei+1	X
ddj-47	783	5	·	·	PUNCT
ddj-47	783	6	ri	ri	PROPN
ddj-47	783	7	,	,	PUNCT
ddj-47	783	8	i−1	i−1	PROPN
ddj-47	783	9	)	)	PUNCT
ddj-47	783	10	=	=	SYM
ddj-47	783	11	0	0	NUM
ddj-47	783	12	,	,	PUNCT
ddj-47	783	13	ei−1	ei−1	PROPN
ddj-47	783	14	·	·	SYM
ddj-47	783	15	ri+1,i	ri+1,i	PROPN
ddj-47	783	16	)	)	PUNCT
ddj-47	784	1	=	=	SYM
ddj-47	784	2	0	0	NUM
ddj-47	784	3	,	,	PUNCT
ddj-47	784	4	ei−1	ei−1	PROPN
ddj-47	784	5	·	·	PUNCT
ddj-47	784	6	ri	ri	PROPN
ddj-47	784	7	,	,	PUNCT
ddj-47	784	8	i−1	i−1	PROPN
ddj-47	784	9	)	)	PUNCT
ddj-47	784	10	=	=	SYM
ddj-47	784	11	1	1	X
ddj-47	784	12	.	.	PUNCT
ddj-47	785	1	(	(	PUNCT
ddj-47	785	2	4.7	4.7	NUM
ddj-47	785	3	)	)	PUNCT
ddj-47	785	4	the	the	DET
ddj-47	785	5	strong	strong	ADJ
ddj-47	785	6	resemblance	resemblance	NOUN
ddj-47	785	7	with	with	ADP
ddj-47	785	8	the	the	DET
ddj-47	785	9	dynamics	dynamic	NOUN
ddj-47	785	10	defined	define	VERB
ddj-47	785	11	by	by	ADP
ddj-47	785	12	kähler	kähler	NOUN
ddj-47	785	13	action	action	NOUN
ddj-47	785	14	predicting	predict	VERB
ddj-47	785	15	spin	spin	NOUN
ddj-47	785	16	glass	glass	NOUN
ddj-47	785	17	degeneracy	degeneracy	NOUN
ddj-47	785	18	associated	associate	VERB
ddj-47	785	19	with	with	ADP
ddj-47	785	20	vacuum	vacuum	NOUN
ddj-47	785	21	extremals	extremal	NOUN
ddj-47	785	22	of	of	ADP
ddj-47	785	23	kähler	kähler	NOUN
ddj-47	785	24	action	action	NOUN
ddj-47	785	25	and	and	CCONJ
ddj-47	785	26	removed	remove	VERB
ddj-47	785	27	by	by	ADP
ddj-47	785	28	small	small	ADJ
ddj-47	785	29	deformations	deformation	NOUN
ddj-47	785	30	to	to	ADP
ddj-47	785	31	non	non	ADJ
ddj-47	785	32	-	-	ADJ
ddj-47	785	33	vacuum	vacuum	ADJ
ddj-47	785	34	extremals	extremal	NOUN
ddj-47	785	35	raises	raise	VERB
ddj-47	785	36	the	the	DET
ddj-47	785	37	hope	hope	NOUN
ddj-47	785	38	that	that	SCONJ
ddj-47	785	39	the	the	DET
ddj-47	785	40	model	model	NOUN
ddj-47	785	41	indeed	indeed	ADV
ddj-47	785	42	catches	catch	VERB
ddj-47	785	43	something	something	PRON
ddj-47	785	44	essential	essential	ADJ
ddj-47	785	45	about	about	ADP
ddj-47	785	46	the	the	DET
ddj-47	785	47	notions	notion	NOUN
ddj-47	785	48	of	of	ADP
ddj-47	785	49	4	4	NUM
ddj-47	785	50	-	-	PUNCT
ddj-47	785	51	d	d	NOUN
ddj-47	785	52	spin	spin	NOUN
ddj-47	785	53	glass	glass	NOUN
ddj-47	785	54	degeneracy	degeneracy	NOUN
ddj-47	785	55	and	and	CCONJ
ddj-47	785	56	quantum	quantum	NOUN
ddj-47	785	57	criticality	criticality	NOUN
ddj-47	785	58	.	.	PUNCT
ddj-47	786	1	4.2	4.2	NUM
ddj-47	786	2	basic	basic	ADJ
ddj-47	786	3	mathematical	mathematical	ADJ
ddj-47	786	4	consequences	consequence	NOUN
ddj-47	786	5	consider	consider	VERB
ddj-47	786	6	first	first	ADV
ddj-47	786	7	the	the	DET
ddj-47	786	8	basic	basic	ADJ
ddj-47	786	9	consequences	consequence	NOUN
ddj-47	786	10	of	of	ADP
ddj-47	786	11	the	the	DET
ddj-47	786	12	variational	variational	ADJ
ddj-47	786	13	equations	equation	NOUN
ddj-47	786	14	.	.	PUNCT
ddj-47	787	1	1	1	X
ddj-47	787	2	.	.	X
ddj-47	787	3	absolute	absolute	ADJ
ddj-47	787	4	minimization	minimization	NOUN
ddj-47	787	5	of	of	ADP
ddj-47	787	6	energy	energy	NOUN
ddj-47	787	7	is	be	AUX
ddj-47	787	8	very	very	ADV
ddj-47	787	9	powerful	powerful	ADJ
ddj-47	787	10	selection	selection	NOUN
ddj-47	787	11	principle	principle	NOUN
ddj-47	787	12	and	and	CCONJ
ddj-47	787	13	expected	expect	VERB
ddj-47	787	14	to	to	PART
ddj-47	787	15	choose	choose	VERB
ddj-47	787	16	highly	highly	ADV
ddj-47	787	17	symmetric	symmetric	ADJ
ddj-47	787	18	configurations	configuration	NOUN
ddj-47	787	19	such	such	ADJ
ddj-47	787	20	as	as	ADP
ddj-47	787	21	α	α	PROPN
ddj-47	787	22	helices	helix	NOUN
ddj-47	787	23	,	,	PUNCT
ddj-47	787	24	β	β	NOUN
ddj-47	787	25	sheets	sheet	NOUN
ddj-47	787	26	,	,	PUNCT
ddj-47	787	27	and	and	CCONJ
ddj-47	787	28	more	more	ADV
ddj-47	787	29	complex	complex	ADJ
ddj-47	787	30	structures	structure	NOUN
ddj-47	787	31	.	.	PUNCT
ddj-47	788	1	if	if	SCONJ
ddj-47	788	2	combined	combine	VERB
ddj-47	788	3	with	with	ADP
ddj-47	788	4	adiabaticity	adiabaticity	NOUN
ddj-47	788	5	assumption	assumption	NOUN
ddj-47	788	6	it	it	PRON
ddj-47	788	7	could	could	AUX
ddj-47	788	8	also	also	ADV
ddj-47	788	9	allow	allow	VERB
ddj-47	788	10	to	to	PART
ddj-47	788	11	understand	understand	VERB
ddj-47	788	12	the	the	DET
ddj-47	788	13	dynamics	dynamic	NOUN
ddj-47	788	14	of	of	ADP
ddj-47	788	15	binding	bind	VERB
ddj-47	788	16	between	between	ADP
ddj-47	788	17	two	two	NUM
ddj-47	788	18	proteins	protein	NOUN
ddj-47	788	19	and	and	CCONJ
ddj-47	788	20	protein	protein	NOUN
ddj-47	788	21	and	and	CCONJ
ddj-47	788	22	dna	dna	PROPN
ddj-47	788	23	/	/	SYM
ddj-47	788	24	rna	rna	NOUN
ddj-47	788	25	.	.	PUNCT
ddj-47	789	1	2	2	X
ddj-47	789	2	.	.	X
ddj-47	789	3	the	the	DET
ddj-47	789	4	extremals	extremal	NOUN
ddj-47	789	5	of	of	ADP
ddj-47	789	6	k	k	PROPN
ddj-47	789	7	>	>	SYM
ddj-47	789	8	0	0	NUM
ddj-47	789	9	action	action	NOUN
ddj-47	789	10	are	be	AUX
ddj-47	789	11	mirror	mirror	NOUN
ddj-47	789	12	images	image	NOUN
ddj-47	789	13	of	of	ADP
ddj-47	789	14	k	k	X
ddj-47	789	15	<	<	X
ddj-47	789	16	0	0	NUM
ddj-47	789	17	action	action	NOUN
ddj-47	789	18	so	so	SCONJ
ddj-47	789	19	that	that	SCONJ
ddj-47	789	20	the	the	DET
ddj-47	789	21	energy	energy	NOUN
ddj-47	789	22	minimum	minimum	NOUN
ddj-47	789	23	for	for	ADP
ddj-47	789	24	k	k	PROPN
ddj-47	789	25	>	>	X
ddj-47	789	26	0	0	PUNCT
ddj-47	789	27	is	be	AUX
ddj-47	789	28	energy	energy	NOUN
ddj-47	789	29	maximum	maximum	NOUN
ddj-47	789	30	for	for	ADP
ddj-47	789	31	k	k	X
ddj-47	789	32	<	<	X
ddj-47	790	1	0	0	X
ddj-47	790	2	.	.	PUNCT
ddj-47	791	1	if	if	SCONJ
ddj-47	791	2	energy	energy	NOUN
ddj-47	791	3	minimization	minimization	NOUN
ddj-47	791	4	is	be	AUX
ddj-47	791	5	applied	apply	VERB
ddj-47	791	6	also	also	ADV
ddj-47	791	7	the	the	DET
ddj-47	791	8	choice	choice	NOUN
ddj-47	791	9	of	of	ADP
ddj-47	791	10	y	y	PROPN
ddj-47	791	11	−	−	PROPN
ddj-47	791	12	y	y	PROPN
ddj-47	791	13	flux	flux	PROPN
ddj-47	791	14	tubes	tubes	PROPN
ddj-47	791	15	,	,	PUNCT
ddj-47	791	16	the	the	DET
ddj-47	791	17	connected	connected	ADJ
ddj-47	791	18	amino	amino	NOUN
ddj-47	791	19	-	-	PUNCT
ddj-47	791	20	acids	acid	NOUN
ddj-47	791	21	should	should	AUX
ddj-47	791	22	be	be	AUX
ddj-47	791	23	as	as	ADV
ddj-47	791	24	near	near	ADJ
ddj-47	791	25	as	as	ADP
ddj-47	791	26	possible	possible	ADJ
ddj-47	791	27	which	which	PRON
ddj-47	791	28	favors	favor	VERB
ddj-47	791	29	alpha	alpha	NOUN
ddj-47	791	30	helices	helix	NOUN
ddj-47	791	31	and	and	CCONJ
ddj-47	791	32	beta	beta	NOUN
ddj-47	791	33	sheets	sheet	NOUN
ddj-47	791	34	.	.	PUNCT
ddj-47	792	1	in	in	ADP
ddj-47	792	2	light	light	NOUN
ddj-47	792	3	of	of	ADP
ddj-47	792	4	this	this	PRON
ddj-47	792	5	k	k	PROPN
ddj-47	792	6	>	>	SYM
ddj-47	792	7	0	0	NUM
ddj-47	792	8	option	option	NOUN
ddj-47	792	9	looks	look	VERB
ddj-47	792	10	the	the	DET
ddj-47	792	11	realistic	realistic	ADJ
ddj-47	792	12	one	one	NOUN
ddj-47	792	13	.	.	PUNCT
ddj-47	793	1	it	it	PRON
ddj-47	793	2	could	could	AUX
ddj-47	793	3	however	however	ADV
ddj-47	793	4	be	be	AUX
ddj-47	793	5	that	that	SCONJ
ddj-47	793	6	for	for	ADP
ddj-47	793	7	large	large	ADJ
ddj-47	793	8	distances	distance	NOUN
ddj-47	793	9	the	the	DET
ddj-47	793	10	sign	sign	NOUN
ddj-47	793	11	of	of	ADP
ddj-47	793	12	the	the	DET
ddj-47	793	13	potential	potential	ADJ
ddj-47	793	14	energy	energy	NOUN
ddj-47	793	15	changes	change	NOUN
ddj-47	793	16	.	.	PUNCT
ddj-47	794	1	for	for	ADP
ddj-47	794	2	k	k	PROPN
ddj-47	794	3	>	>	SYM
ddj-47	794	4	0	0	NUM
ddj-47	794	5	option	option	NOUN
ddj-47	794	6	long	long	ADJ
ddj-47	794	7	flux	flux	NOUN
ddj-47	794	8	tubes	tube	NOUN
ddj-47	794	9	are	be	AUX
ddj-47	794	10	not	not	PART
ddj-47	794	11	favored	favor	VERB
ddj-47	794	12	by	by	ADP
ddj-47	794	13	energy	energy	NOUN
ddj-47	794	14	minimization	minimization	NOUN
ddj-47	794	15	.	.	PUNCT
ddj-47	795	1	the	the	DET
ddj-47	795	2	simplest	simple	ADJ
ddj-47	795	3	cure	cure	NOUN
ddj-47	795	4	would	would	AUX
ddj-47	795	5	be	be	AUX
ddj-47	795	6	large	large	ADJ
ddj-47	795	7	value	value	NOUN
ddj-47	795	8	of	of	ADP
ddj-47	795	9	planck	planck	NOUN
ddj-47	795	10	constant	constant	ADJ
ddj-47	795	11	changing	change	VERB
ddj-47	795	12	the	the	DET
ddj-47	795	13	scale	scale	NOUN
ddj-47	795	14	of	of	ADP
ddj-47	795	15	the	the	DET
ddj-47	795	16	potential	potential	NOUN
ddj-47	795	17	.	.	PUNCT
ddj-47	796	1	if	if	SCONJ
ddj-47	796	2	the	the	DET
ddj-47	796	3	potential	potential	ADJ
ddj-47	796	4	energy	energy	NOUN
ddj-47	796	5	changes	change	NOUN
ddj-47	796	6	sign	sign	VERB
ddj-47	796	7	at	at	ADP
ddj-47	796	8	large	large	ADJ
ddj-47	796	9	distances	distance	NOUN
ddj-47	796	10	the	the	DET
ddj-47	796	11	situation	situation	NOUN
ddj-47	796	12	changes	change	VERB
ddj-47	796	13	also	also	ADV
ddj-47	796	14	and	and	CCONJ
ddj-47	796	15	ri	ri	NOUN
ddj-47	796	16	,	,	PUNCT
ddj-47	796	17	k(i	k(i	PROPN
ddj-47	796	18	)	)	PUNCT
ddj-47	796	19	would	would	AUX
ddj-47	796	20	be	be	AUX
ddj-47	796	21	as	as	ADV
ddj-47	796	22	large	large	ADJ
ddj-47	796	23	as	as	ADP
ddj-47	796	24	possible	possible	ADJ
ddj-47	796	25	subject	subject	NOUN
ddj-47	796	26	to	to	ADP
ddj-47	796	27	the	the	DET
ddj-47	796	28	condition	condition	NOUN
ddj-47	796	29	from	from	ADP
ddj-47	796	30	fixed	fix	VERB
ddj-47	796	31	chain	chain	NOUN
ddj-47	796	32	length	length	NOUN
ddj-47	796	33	.	.	PUNCT
ddj-47	797	1	3	3	X
ddj-47	797	2	.	.	X
ddj-47	797	3	if	if	SCONJ
ddj-47	797	4	the	the	DET
ddj-47	797	5	amino	amino	NOUN
ddj-47	797	6	-	-	PUNCT
ddj-47	797	7	acid	acid	NOUN
ddj-47	797	8	is	be	AUX
ddj-47	797	9	not	not	PART
ddj-47	797	10	paired	pair	VERB
ddj-47	797	11	,	,	PUNCT
ddj-47	797	12	it	it	PRON
ddj-47	797	13	does	do	AUX
ddj-47	797	14	not	not	PART
ddj-47	797	15	experience	experience	VERB
ddj-47	797	16	the	the	DET
ddj-47	797	17	long	long	ADJ
ddj-47	797	18	range	range	NOUN
ddj-47	797	19	force	force	NOUN
ddj-47	797	20	and	and	CCONJ
ddj-47	797	21	one	one	NUM
ddj-47	797	22	has	have	VERB
ddj-47	797	23	λi+1ri+1,i	λi+1ri+1,i	NOUN
ddj-47	797	24	−	−	PROPN
ddj-47	797	25	λi−1ri	λi−1ri	NUM
ddj-47	797	26	,	,	PUNCT
ddj-47	797	27	i−1	i−1	PROPN
ddj-47	797	28	=	=	PROPN
ddj-47	797	29	0	0	PROPN
ddj-47	797	30	.	.	PUNCT
ddj-47	798	1	(	(	PUNCT
ddj-47	798	2	4.8	4.8	NUM
ddj-47	798	3	)	)	PUNCT
ddj-47	798	4	situation	situation	NOUN
ddj-47	798	5	becomes	become	VERB
ddj-47	798	6	non	non	ADJ
ddj-47	798	7	-	-	ADJ
ddj-47	798	8	deterministic	deterministic	ADJ
ddj-47	798	9	and	and	CCONJ
ddj-47	798	10	the	the	DET
ddj-47	798	11	portions	portion	NOUN
ddj-47	798	12	of	of	ADP
ddj-47	798	13	the	the	DET
ddj-47	798	14	amino	amino	NOUN
ddj-47	798	15	-	-	PUNCT
ddj-47	798	16	acid	acid	NOUN
ddj-47	798	17	chain	chain	NOUN
ddj-47	798	18	for	for	ADP
ddj-47	798	19	which	which	PRON
ddj-47	798	20	the	the	DET
ddj-47	798	21	amino	amino	NOUN
ddj-47	798	22	-	-	PUNCT
ddj-47	798	23	acids	acid	NOUN
ddj-47	798	24	do	do	AUX
ddj-47	798	25	not	not	PART
ddj-47	798	26	have	have	VERB
ddj-47	798	27	a	a	DET
ddj-47	798	28	pair	pair	NOUN
ddj-47	798	29	behave	behave	VERB
ddj-47	798	30	like	like	ADP
ddj-47	798	31	random	random	ADJ
ddj-47	798	32	coils	coil	NOUN
ddj-47	798	33	.	.	PUNCT
ddj-47	799	1	this	this	PRON
ddj-47	799	2	is	be	AUX
ddj-47	799	3	encouraging	encouraging	ADJ
ddj-47	799	4	since	since	SCONJ
ddj-47	799	5	this	this	DET
ddj-47	799	6	kind	kind	NOUN
ddj-47	799	7	of	of	ADP
ddj-47	799	8	portions	portion	NOUN
ddj-47	799	9	are	be	AUX
ddj-47	799	10	present	present	ADJ
ddj-47	799	11	in	in	ADP
ddj-47	799	12	folded	fold	VERB
ddj-47	799	13	amino	amino	NOUN
ddj-47	799	14	-	-	PUNCT
ddj-47	799	15	acids	acid	NOUN
ddj-47	799	16	.	.	PUNCT
ddj-47	800	1	the	the	DET
ddj-47	800	2	absence	absence	NOUN
ddj-47	800	3	of	of	ADP
ddj-47	800	4	n	n	NOUN
ddj-47	800	5	−h	−h	ADV
ddj-47	800	6	from	from	ADP
ddj-47	800	7	pro	pro	ADJ
ddj-47	800	8	allows	allow	VERB
ddj-47	800	9	to	to	PART
ddj-47	800	10	understand	understand	VERB
ddj-47	800	11	the	the	DET
ddj-47	800	12	very	very	ADV
ddj-47	800	13	special	special	ADJ
ddj-47	800	14	role	role	NOUN
ddj-47	800	15	of	of	ADP
ddj-47	800	16	pro	pro	ADJ
ddj-47	800	17	as	as	ADP
ddj-47	800	18	being	be	AUX
ddj-47	800	19	associated	associate	VERB
ddj-47	800	20	with	with	ADP
ddj-47	800	21	turns	turn	NOUN
ddj-47	800	22	of	of	ADP
ddj-47	800	23	alpha	alpha	NOUN
ddj-47	800	24	helices	helix	NOUN
ddj-47	800	25	and	and	CCONJ
ddj-47	800	26	beta	beta	NOUN
ddj-47	800	27	sheets	sheet	NOUN
ddj-47	800	28	.	.	PUNCT
ddj-47	801	1	4	4	X
ddj-47	801	2	.	.	X
ddj-47	801	3	the	the	DET
ddj-47	801	4	disappearance	disappearance	NOUN
ddj-47	801	5	of	of	ADP
ddj-47	801	6	some	some	DET
ddj-47	801	7	flux	flux	NOUN
ddj-47	801	8	tubes	tube	NOUN
ddj-47	801	9	does	do	AUX
ddj-47	801	10	not	not	PART
ddj-47	801	11	destroy	destroy	VERB
ddj-47	801	12	a	a	DET
ddj-47	801	13	given	give	VERB
ddj-47	801	14	solution	solution	NOUN
ddj-47	801	15	of	of	ADP
ddj-47	801	16	the	the	DET
ddj-47	801	17	conditions	condition	NOUN
ddj-47	801	18	but	but	CCONJ
ddj-47	801	19	makes	make	VERB
ddj-47	801	20	it	it	PRON
ddj-47	801	21	increasingly	increasingly	ADV
ddj-47	801	22	non	non	ADJ
ddj-47	801	23	-	-	ADJ
ddj-47	801	24	deterministic	deterministic	ADJ
ddj-47	801	25	.	.	PUNCT
ddj-47	802	1	the	the	DET
ddj-47	802	2	interpretation	interpretation	NOUN
ddj-47	802	3	as	as	ADP
ddj-47	802	4	a	a	DET
ddj-47	802	5	degradation	degradation	NOUN
ddj-47	802	6	or	or	CCONJ
ddj-47	802	7	ageing	ageing	NOUN
ddj-47	802	8	at	at	ADP
ddj-47	802	9	molecular	molecular	ADJ
ddj-47	802	10	level	level	NOUN
ddj-47	802	11	conforms	conform	VERB
ddj-47	802	12	with	with	ADP
ddj-47	802	13	the	the	DET
ddj-47	802	14	interpretation	interpretation	NOUN
ddj-47	802	15	of	of	ADP
ddj-47	802	16	braiding	braid	VERB
ddj-47	802	17	as	as	ADP
ddj-47	802	18	a	a	DET
ddj-47	802	19	basic	basic	ADJ
ddj-47	802	20	characteristic	characteristic	NOUN
ddj-47	802	21	of	of	ADP
ddj-47	802	22	life	life	NOUN
ddj-47	802	23	.	.	PUNCT
ddj-47	803	1	an	an	DET
ddj-47	803	2	attractive	attractive	ADJ
ddj-47	803	3	interpretation	interpretation	NOUN
ddj-47	803	4	of	of	ADP
ddj-47	803	5	the	the	DET
ddj-47	803	6	density	density	NOUN
ddj-47	803	7	of	of	ADP
ddj-47	803	8	flux	flux	NOUN
ddj-47	803	9	tubes	tube	NOUN
ddj-47	803	10	is	be	AUX
ddj-47	803	11	as	as	ADV
ddj-47	803	12	correlate	correlate	ADJ
ddj-47	803	13	for	for	ADP
ddj-47	803	14	resolution	resolution	NOUN
ddj-47	803	15	for	for	ADP
ddj-47	803	16	cognition	cognition	NOUN
ddj-47	803	17	and	and	CCONJ
ddj-47	803	18	sensory	sensory	ADJ
ddj-47	803	19	perception	perception	NOUN
ddj-47	803	20	and	and	CCONJ
ddj-47	803	21	motor	motor	NOUN
ddj-47	803	22	action	action	NOUN
ddj-47	803	23	as	as	ADP
ddj-47	803	24	counterpart	counterpart	NOUN
ddj-47	803	25	of	of	ADP
ddj-47	803	26	measurement	measurement	NOUN
ddj-47	803	27	resolution	resolution	NOUN
ddj-47	803	28	which	which	PRON
ddj-47	803	29	is	be	AUX
ddj-47	803	30	fundamental	fundamental	ADJ
ddj-47	803	31	notion	notion	NOUN
ddj-47	803	32	of	of	ADP
ddj-47	803	33	quantum	quantum	PROPN
ddj-47	803	34	tgd	tgd	PROPN
ddj-47	803	35	.	.	PUNCT
ddj-47	804	1	issn	issn	PROPN
ddj-47	804	2	:	:	PUNCT
ddj-47	804	3	2159	2159	NUM
ddj-47	804	4	-	-	SYM
ddj-47	804	5	0465	0465	NUM
ddj-47	804	6	dna	dna	PROPN
ddj-47	804	7	decipher	decipher	PROPN
ddj-47	804	8	journal	journal	PROPN
ddj-47	804	9	june	june	PROPN
ddj-47	804	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	804	11	published	publish	VERB
ddj-47	804	12	by	by	ADP
ddj-47	804	13	quantumdream	quantumdream	PROPN
ddj-47	804	14	,	,	PUNCT
ddj-47	804	15	inc	inc	PROPN
ddj-47	804	16	.	.	PROPN
ddj-47	804	17	dna	dna	PROPN
ddj-47	804	18	decipher	decipher	PROPN
ddj-47	804	19	journal	journal	NOUN
ddj-47	805	1	|	|	ADV
ddj-47	805	2	may	may	AUX
ddj-47	805	3	2013	2013	NUM
ddj-47	805	4	|	|	ADV
ddj-47	805	5	volume	volume	NOUN
ddj-47	805	6	3	3	NUM
ddj-47	805	7	|	|	NOUN
ddj-47	805	8	issue	issue	VERB
ddj-47	805	9	1	1	NUM
ddj-47	805	10	|	|	ADV
ddj-47	805	11	pp	pp	ADJ
ddj-47	805	12	.	.	PUNCT
ddj-47	806	1	58	58	NUM
ddj-47	806	2	-	-	SYM
ddj-47	806	3	88	88	NUM
ddj-47	806	4	82	82	NUM
ddj-47	806	5	pitkänen	pitkänen	NOUN
ddj-47	806	6	,	,	PUNCT
ddj-47	806	7	m.	m.	NOUN
ddj-47	806	8	,	,	PUNCT
ddj-47	806	9	a	a	DET
ddj-47	806	10	model	model	NOUN
ddj-47	806	11	for	for	ADP
ddj-47	806	12	protein	protein	NOUN
ddj-47	806	13	folding	folding	NOUN
ddj-47	806	14	and	and	CCONJ
ddj-47	806	15	biocatalysis	biocatalysis	NOUN
ddj-47	806	16	4.3	4.3	NUM
ddj-47	806	17	model	model	NOUN
ddj-47	806	18	for	for	ADP
ddj-47	806	19	the	the	DET
ddj-47	806	20	helical	helical	ADJ
ddj-47	806	21	structures	structure	NOUN
ddj-47	806	22	α	α	PRON
ddj-47	806	23	helix	helix	NOUN
ddj-47	806	24	[	[	X
ddj-47	806	25	13	13	NUM
ddj-47	806	26	,	,	PUNCT
ddj-47	806	27	1	1	NUM
ddj-47	806	28	]	]	PUNCT
ddj-47	806	29	,	,	PUNCT
ddj-47	806	30	which	which	PRON
ddj-47	806	31	is	be	AUX
ddj-47	806	32	only	only	ADV
ddj-47	806	33	one	one	NUM
ddj-47	806	34	member	member	NOUN
ddj-47	806	35	of	of	ADP
ddj-47	806	36	a	a	DET
ddj-47	806	37	rich	rich	ADJ
ddj-47	806	38	family	family	NOUN
ddj-47	806	39	of	of	ADP
ddj-47	806	40	helical	helical	ADJ
ddj-47	806	41	structures	structure	NOUN
ddj-47	806	42	possible	possible	ADJ
ddj-47	806	43	for	for	ADP
ddj-47	806	44	amino	amino	NOUN
ddj-47	806	45	-	-	PUNCT
ddj-47	806	46	acid	acid	NOUN
ddj-47	806	47	chains	chain	NOUN
ddj-47	806	48	,	,	PUNCT
ddj-47	806	49	serves	serve	VERB
ddj-47	806	50	as	as	ADP
ddj-47	806	51	the	the	DET
ddj-47	806	52	first	first	ADJ
ddj-47	806	53	test	test	NOUN
ddj-47	806	54	for	for	ADP
ddj-47	806	55	the	the	DET
ddj-47	806	56	model	model	NOUN
ddj-47	806	57	.	.	PUNCT
ddj-47	807	1	as	as	ADP
ddj-47	807	2	a	a	DET
ddj-47	807	3	matter	matter	NOUN
ddj-47	807	4	fact	fact	NOUN
ddj-47	807	5	,	,	PUNCT
ddj-47	807	6	the	the	DET
ddj-47	807	7	specific	specific	ADJ
ddj-47	807	8	properties	property	NOUN
ddj-47	807	9	of	of	ADP
ddj-47	807	10	α	α	PRON
ddj-47	807	11	helix	helix	NOUN
ddj-47	807	12	are	be	AUX
ddj-47	807	13	not	not	PART
ddj-47	807	14	relevant	relevant	ADJ
ddj-47	807	15	for	for	ADP
ddj-47	807	16	the	the	DET
ddj-47	807	17	model	model	NOUN
ddj-47	807	18	discussed	discuss	VERB
ddj-47	807	19	.	.	PUNCT
ddj-47	808	1	1	1	X
ddj-47	808	2	.	.	X
ddj-47	808	3	α	α	PRON
ddj-47	808	4	helix	helix	NOUN
ddj-47	808	5	has	have	VERB
ddj-47	808	6	nearly	nearly	ADV
ddj-47	808	7	vertical	vertical	ADJ
ddj-47	808	8	nh−−−o	nh−−−o	NOUN
ddj-47	808	9	=	=	PUNCT
ddj-47	808	10	hydrogen	hydrogen	NOUN
ddj-47	808	11	bond	bond	NOUN
ddj-47	808	12	between	between	ADP
ddj-47	808	13	i	i	PRON
ddj-47	808	14	:	:	PUNCT
ddj-47	808	15	th	th	X
ddj-47	808	16	and	and	CCONJ
ddj-47	808	17	i−4	i−4	NOUN
ddj-47	808	18	:	:	PUNCT
ddj-47	808	19	th	th	X
ddj-47	808	20	amino	amino	NOUN
ddj-47	808	21	-	-	PUNCT
ddj-47	808	22	acid	acid	NOUN
ddj-47	808	23	.	.	PUNCT
ddj-47	809	1	also	also	ADV
ddj-47	809	2	(	(	PUNCT
ddj-47	809	3	i	i	PRON
ddj-47	809	4	,	,	PUNCT
ddj-47	809	5	i−3	i−3	PROPN
ddj-47	809	6	)	)	PUNCT
ddj-47	809	7	and	and	CCONJ
ddj-47	809	8	(	(	PUNCT
ddj-47	809	9	i	i	NOUN
ddj-47	809	10	,	,	PUNCT
ddj-47	809	11	i−	i−	PROPN
ddj-47	809	12	5	5	NUM
ddj-47	809	13	)	)	PUNCT
ddj-47	809	14	bondings	bonding	NOUN
ddj-47	809	15	are	be	AUX
ddj-47	809	16	possible	possible	ADJ
ddj-47	809	17	.	.	PUNCT
ddj-47	810	1	there	there	PRON
ddj-47	810	2	are	be	VERB
ddj-47	810	3	3.6	3.6	NUM
ddj-47	810	4	residues	residue	NOUN
ddj-47	810	5	per	per	ADP
ddj-47	810	6	turn	turn	NOUN
ddj-47	810	7	so	so	SCONJ
ddj-47	810	8	that	that	SCONJ
ddj-47	810	9	the	the	DET
ddj-47	810	10	basic	basic	ADJ
ddj-47	810	11	structural	structural	ADJ
ddj-47	810	12	unit	unit	NOUN
ddj-47	810	13	has	have	VERB
ddj-47	810	14	5	5	NUM
ddj-47	810	15	turns	turn	NOUN
ddj-47	810	16	and	and	CCONJ
ddj-47	810	17	consists	consist	VERB
ddj-47	810	18	of	of	ADP
ddj-47	810	19	18	18	NUM
ddj-47	810	20	amino	amino	NOUN
ddj-47	810	21	-	-	PUNCT
ddj-47	810	22	acids	acid	NOUN
ddj-47	810	23	.	.	PUNCT
ddj-47	811	1	one	one	NUM
ddj-47	811	2	residue	residue	NOUN
ddj-47	811	3	corresponds	correspond	VERB
ddj-47	811	4	to	to	ADP
ddj-47	811	5	a	a	DET
ddj-47	811	6	vertical	vertical	ADJ
ddj-47	811	7	translation	translation	NOUN
ddj-47	811	8	of	of	ADP
ddj-47	811	9	1.5	1.5	NUM
ddj-47	811	10	angstrom	angstrom	NOUN
ddj-47	811	11	.	.	PUNCT
ddj-47	812	1	the	the	DET
ddj-47	812	2	chain	chain	NOUN
ddj-47	812	3	contains	contain	VERB
ddj-47	812	4	single	single	ADJ
ddj-47	812	5	amino	amino	NOUN
ddj-47	812	6	-	-	PUNCT
ddj-47	812	7	acid	acid	NOUN
ddj-47	812	8	per	per	ADP
ddj-47	812	9	length	length	NOUN
ddj-47	812	10	of	of	ADP
ddj-47	812	11	about	about	ADP
ddj-47	812	12	3.8	3.8	NUM
ddj-47	812	13	angstrom	angstrom	NOUN
ddj-47	812	14	and	and	CCONJ
ddj-47	812	15	the	the	DET
ddj-47	812	16	angular	angular	ADJ
ddj-47	812	17	separation	separation	NOUN
ddj-47	812	18	of	of	ADP
ddj-47	812	19	subsequent	subsequent	ADJ
ddj-47	812	20	amino	amino	NOUN
ddj-47	812	21	-	-	PUNCT
ddj-47	812	22	acids	acid	NOUN
ddj-47	812	23	is	be	AUX
ddj-47	812	24	100	100	NUM
ddj-47	812	25	degrees	degree	NOUN
ddj-47	812	26	in	in	ADP
ddj-47	812	27	the	the	DET
ddj-47	812	28	planar	planar	ADJ
ddj-47	812	29	projection	projection	NOUN
ddj-47	812	30	.	.	PUNCT
ddj-47	813	1	2	2	X
ddj-47	813	2	.	.	NUM
ddj-47	813	3	isolated	isolate	VERB
ddj-47	813	4	α	α	PROPN
ddj-47	813	5	helices	helix	NOUN
ddj-47	813	6	are	be	AUX
ddj-47	813	7	not	not	PART
ddj-47	813	8	stable	stable	ADJ
ddj-47	813	9	but	but	CCONJ
ddj-47	813	10	can	can	AUX
ddj-47	813	11	be	be	AUX
ddj-47	813	12	stabilized	stabilize	VERB
ddj-47	813	13	by	by	ADP
ddj-47	813	14	secondary	secondary	ADJ
ddj-47	813	15	coiling	coiling	NOUN
ddj-47	813	16	:	:	PUNCT
ddj-47	813	17	their	their	PRON
ddj-47	813	18	lifetime	lifetime	NOUN
ddj-47	813	19	is	be	AUX
ddj-47	813	20	of	of	ADP
ddj-47	813	21	order	order	NOUN
ddj-47	813	22	10−5	10−5	NUM
ddj-47	813	23	−	−	NOUN
ddj-47	813	24	10−7	10−7	NUM
ddj-47	813	25	seconds	second	NOUN
ddj-47	813	26	.	.	PUNCT
ddj-47	814	1	if	if	SCONJ
ddj-47	814	2	the	the	DET
ddj-47	814	3	flux	flux	NOUN
ddj-47	814	4	tubes	tube	NOUN
ddj-47	814	5	are	be	AUX
ddj-47	814	6	associated	associate	VERB
ddj-47	814	7	with	with	ADP
ddj-47	814	8	hydrogen	hydrogen	NOUN
ddj-47	814	9	bonds	bond	NOUN
ddj-47	814	10	,	,	PUNCT
ddj-47	814	11	the	the	DET
ddj-47	814	12	instability	instability	NOUN
ddj-47	814	13	would	would	AUX
ddj-47	814	14	be	be	AUX
ddj-47	814	15	naturally	naturally	ADV
ddj-47	814	16	due	due	ADJ
ddj-47	814	17	to	to	ADP
ddj-47	814	18	a	a	DET
ddj-47	814	19	reconnection	reconnection	NOUN
ddj-47	814	20	process	process	NOUN
ddj-47	814	21	involving	involve	VERB
ddj-47	814	22	water	water	NOUN
ddj-47	814	23	molecules	molecule	NOUN
ddj-47	814	24	.	.	PUNCT
ddj-47	815	1	consider	consider	VERB
ddj-47	815	2	now	now	ADV
ddj-47	815	3	the	the	DET
ddj-47	815	4	model	model	NOUN
ddj-47	815	5	.	.	PUNCT
ddj-47	816	1	1	1	X
ddj-47	816	2	.	.	X
ddj-47	816	3	assume	assume	VERB
ddj-47	816	4	that	that	SCONJ
ddj-47	816	5	hydrogen	hydrogen	NOUN
ddj-47	816	6	bond	bond	NOUN
ddj-47	816	7	is	be	AUX
ddj-47	816	8	accompanied	accompany	VERB
ddj-47	816	9	by	by	ADP
ddj-47	816	10	a	a	DET
ddj-47	816	11	special	special	ADJ
ddj-47	816	12	case	case	NOUN
ddj-47	816	13	of	of	ADP
ddj-47	816	14	a	a	DET
ddj-47	816	15	flux	flux	NOUN
ddj-47	816	16	tube	tube	NOUN
ddj-47	816	17	resulting	result	VERB
ddj-47	816	18	in	in	ADP
ddj-47	816	19	the	the	DET
ddj-47	816	20	reduction	reduction	NOUN
ddj-47	816	21	of	of	ADP
ddj-47	816	22	the	the	DET
ddj-47	816	23	value	value	NOUN
ddj-47	816	24	of	of	ADP
ddj-47	816	25	planck	planck	NOUN
ddj-47	816	26	constant	constant	ADJ
ddj-47	816	27	.	.	PUNCT
ddj-47	817	1	short	short	ADJ
ddj-47	817	2	flux	flux	PROPN
ddj-47	817	3	tubes	tube	NOUN
ddj-47	817	4	(	(	PUNCT
ddj-47	817	5	hydrogen	hydrogen	NOUN
ddj-47	817	6	bonds	bond	NOUN
ddj-47	817	7	)	)	PUNCT
ddj-47	817	8	would	would	AUX
ddj-47	817	9	connect	connect	VERB
ddj-47	817	10	i	i	PRON
ddj-47	817	11	−	−	PROPN
ddj-47	818	1	k	k	NOUN
ddj-47	818	2	:	:	PUNCT
ddj-47	818	3	th	th	NUM
ddj-47	818	4	,	,	PUNCT
ddj-47	818	5	i	i	PRON
ddj-47	818	6	:	:	PUNCT
ddj-47	818	7	th	th	X
ddj-47	818	8	and	and	CCONJ
ddj-47	818	9	i	i	PRON
ddj-47	818	10	+	+	CCONJ
ddj-47	819	1	k	k	ADJ
ddj-47	819	2	:	:	PUNCT
ddj-47	819	3	th	th	VERB
ddj-47	819	4	amino	amino	NOUN
ddj-47	819	5	-	-	PUNCT
ddj-47	819	6	acids	acid	NOUN
ddj-47	819	7	,	,	PUNCT
ddj-47	819	8	k	k	NOUN
ddj-47	819	9	=	=	SYM
ddj-47	819	10	3	3	NUM
ddj-47	819	11	,	,	PUNCT
ddj-47	819	12	4	4	NUM
ddj-47	819	13	or	or	CCONJ
ddj-47	819	14	5	5	NUM
ddj-47	819	15	.	.	PUNCT
ddj-47	820	1	the	the	DET
ddj-47	820	2	forces	force	NOUN
ddj-47	820	3	between	between	ADP
ddj-47	820	4	i−k	i−k	NOUN
ddj-47	820	5	:	:	PUNCT
ddj-47	820	6	th	th	X
ddj-47	820	7	and	and	CCONJ
ddj-47	820	8	i	i	PRON
ddj-47	820	9	:	:	PUNCT
ddj-47	820	10	th	th	X
ddj-47	820	11	and	and	CCONJ
ddj-47	820	12	i	i	PRON
ddj-47	820	13	:	:	PUNCT
ddj-47	820	14	th	th	X
ddj-47	820	15	and	and	CCONJ
ddj-47	820	16	i+k	i+k	NUM
ddj-47	820	17	:	:	PUNCT
ddj-47	820	18	th	th	VERB
ddj-47	820	19	amino	amino	NOUN
ddj-47	820	20	-	-	PUNCT
ddj-47	820	21	acid	acid	NOUN
ddj-47	820	22	compensate	compensate	NOUN
ddj-47	820	23	each	each	DET
ddj-47	820	24	other	other	ADJ
ddj-47	820	25	exactly	exactly	ADV
ddj-47	820	26	for	for	ADP
ddj-47	820	27	an	an	DET
ddj-47	820	28	ideal	ideal	ADJ
ddj-47	820	29	helix	helix	NOUN
ddj-47	820	30	so	so	SCONJ
ddj-47	820	31	that	that	SCONJ
ddj-47	820	32	the	the	DET
ddj-47	820	33	conditions	condition	NOUN
ddj-47	820	34	are	be	AUX
ddj-47	820	35	satisfied	satisfied	ADJ
ddj-47	820	36	identically	identically	ADV
ddj-47	820	37	.	.	PUNCT
ddj-47	821	1	this	this	DET
ddj-47	821	2	kind	kind	NOUN
ddj-47	821	3	of	of	ADP
ddj-47	821	4	mechanism	mechanism	NOUN
ddj-47	821	5	work	work	NOUN
ddj-47	821	6	also	also	ADV
ddj-47	821	7	for	for	ADP
ddj-47	821	8	more	more	ADJ
ddj-47	821	9	general	general	ADJ
ddj-47	821	10	helices	helix	NOUN
ddj-47	821	11	.	.	PUNCT
ddj-47	822	1	y	y	PROPN
ddj-47	822	2	=	=	PUNCT
ddj-47	823	1	z	z	PROPN
ddj-47	823	2	(	(	PUNCT
ddj-47	823	3	y	y	NOUN
ddj-47	823	4	=	=	PUNCT
ddj-47	823	5	zc	zc	X
ddj-47	823	6	)	)	PUNCT
ddj-47	823	7	pairing	pair	VERB
ddj-47	823	8	poses	pose	VERB
ddj-47	823	9	special	special	ADJ
ddj-47	823	10	conditions	condition	NOUN
ddj-47	823	11	on	on	ADP
ddj-47	823	12	the	the	DET
ddj-47	823	13	helical	helical	ADJ
ddj-47	823	14	structures	structure	NOUN
ddj-47	823	15	themselves	themselves	PRON
ddj-47	823	16	and	and	CCONJ
ddj-47	823	17	also	also	ADV
ddj-47	823	18	on	on	ADP
ddj-47	823	19	the	the	DET
ddj-47	823	20	genes	gene	NOUN
ddj-47	823	21	coding	code	VERB
ddj-47	823	22	for	for	ADP
ddj-47	823	23	these	these	DET
ddj-47	823	24	structures	structure	NOUN
ddj-47	823	25	.	.	PUNCT
ddj-47	824	1	2	2	X
ddj-47	824	2	.	.	X
ddj-47	824	3	gly	gly	ADJ
ddj-47	824	4	helices	helix	NOUN
ddj-47	824	5	are	be	AUX
ddj-47	824	6	consistent	consistent	ADJ
ddj-47	824	7	with	with	ADP
ddj-47	824	8	both	both	CCONJ
ddj-47	824	9	y	y	PROPN
ddj-47	824	10	=	=	SYM
ddj-47	824	11	z	z	PROPN
ddj-47	824	12	and	and	CCONJ
ddj-47	824	13	y	y	PROPN
ddj-47	824	14	=	=	NOUN
ddj-47	824	15	zc	zc	NOUN
ddj-47	824	16	pairings	pairing	NOUN
ddj-47	824	17	.	.	PUNCT
ddj-47	825	1	the	the	DET
ddj-47	825	2	spontaneous	spontaneous	ADJ
ddj-47	825	3	generation	generation	NOUN
ddj-47	825	4	of	of	ADP
ddj-47	825	5	unstable	unstable	ADJ
ddj-47	825	6	helices	helix	NOUN
ddj-47	825	7	in	in	ADP
ddj-47	825	8	sequences	sequence	NOUN
ddj-47	825	9	consisting	consist	VERB
ddj-47	825	10	of	of	ADP
ddj-47	825	11	mere	mere	ADJ
ddj-47	825	12	gly	gly	NOUN
ddj-47	825	13	could	could	AUX
ddj-47	825	14	be	be	AUX
ddj-47	825	15	understood	understand	VERB
ddj-47	825	16	as	as	ADP
ddj-47	825	17	the	the	DET
ddj-47	825	18	instability	instability	NOUN
ddj-47	825	19	of	of	ADP
ddj-47	825	20	gly	gly	ADV
ddj-47	825	21	-	-	PUNCT
ddj-47	825	22	gly	gly	NOUN
ddj-47	825	23	flux	flux	NOUN
ddj-47	825	24	tubes	tube	NOUN
ddj-47	825	25	against	against	ADP
ddj-47	825	26	reconnection	reconnection	NOUN
ddj-47	825	27	with	with	ADP
ddj-47	825	28	hydrogen	hydrogen	NOUN
ddj-47	825	29	bonds	bond	NOUN
ddj-47	825	30	connecting	connect	VERB
ddj-47	825	31	surrounding	surround	VERB
ddj-47	825	32	water	water	NOUN
ddj-47	825	33	molecules	molecule	NOUN
ddj-47	825	34	.	.	PUNCT
ddj-47	826	1	also	also	ADV
ddj-47	826	2	the	the	DET
ddj-47	826	3	sequences	sequence	NOUN
ddj-47	826	4	consisting	consist	VERB
ddj-47	826	5	of	of	ADP
ddj-47	826	6	mere	mere	ADJ
ddj-47	826	7	pro	pro	NOUN
ddj-47	826	8	can	can	AUX
ddj-47	826	9	give	give	VERB
ddj-47	826	10	rise	rise	NOUN
ddj-47	826	11	to	to	ADP
ddj-47	826	12	unstable	unstable	ADJ
ddj-47	826	13	helices	helix	NOUN
ddj-47	826	14	.	.	PUNCT
ddj-47	827	1	pro	pro	PROPN
ddj-47	827	2	does	do	AUX
ddj-47	827	3	not	not	PART
ddj-47	827	4	possess	possess	VERB
ddj-47	827	5	n	n	PRON
ddj-47	827	6	−h	−h	ADJ
ddj-47	827	7	and	and	CCONJ
ddj-47	827	8	the	the	DET
ddj-47	827	9	residue	residue	NOUN
ddj-47	827	10	can	can	AUX
ddj-47	827	11	not	not	PART
ddj-47	827	12	act	act	VERB
ddj-47	827	13	as	as	ADP
ddj-47	827	14	a	a	DET
ddj-47	827	15	donor	donor	NOUN
ddj-47	827	16	in	in	ADP
ddj-47	827	17	hydrogen	hydrogen	NOUN
ddj-47	827	18	bond	bond	NOUN
ddj-47	827	19	.	.	PUNCT
ddj-47	828	1	this	this	PRON
ddj-47	828	2	suggests	suggest	VERB
ddj-47	828	3	that	that	SCONJ
ddj-47	828	4	the	the	DET
ddj-47	828	5	residue	residue	NOUN
ddj-47	828	6	of	of	ADP
ddj-47	828	7	pro	pro	X
ddj-47	828	8	can	can	AUX
ddj-47	828	9	have	have	VERB
ddj-47	828	10	flux	flux	NOUN
ddj-47	828	11	tubes	tube	NOUN
ddj-47	828	12	connecting	connect	VERB
ddj-47	828	13	it	it	PRON
ddj-47	828	14	to	to	ADP
ddj-47	828	15	o	o	NOUN
ddj-47	828	16	=	=	PUNCT
ddj-47	828	17	but	but	CCONJ
ddj-47	828	18	not	not	PART
ddj-47	828	19	identifiable	identifiable	ADJ
ddj-47	828	20	as	as	ADP
ddj-47	828	21	ordinary	ordinary	ADJ
ddj-47	828	22	hydrogen	hydrogen	NOUN
ddj-47	828	23	bond	bond	NOUN
ddj-47	828	24	.	.	PUNCT
ddj-47	829	1	there	there	PRON
ddj-47	829	2	are	be	VERB
ddj-47	829	3	also	also	ADV
ddj-47	829	4	more	more	ADV
ddj-47	829	5	complex	complex	ADJ
ddj-47	829	6	structures	structure	NOUN
ddj-47	829	7	formed	form	VERB
ddj-47	829	8	form	form	NOUN
ddj-47	829	9	helices	helix	NOUN
ddj-47	829	10	[	[	X
ddj-47	829	11	13	13	NUM
ddj-47	829	12	]	]	PUNCT
ddj-47	829	13	.	.	PUNCT
ddj-47	830	1	for	for	ADP
ddj-47	830	2	coiled	coil	VERB
ddj-47	830	3	coils	coil	NOUN
ddj-47	830	4	of	of	ADP
ddj-47	830	5	two	two	NUM
ddj-47	830	6	or	or	CCONJ
ddj-47	830	7	more	more	ADJ
ddj-47	830	8	alpha	alpha	NOUN
ddj-47	830	9	helices	helix	NOUN
ddj-47	830	10	consisting	consist	VERB
ddj-47	830	11	of	of	ADP
ddj-47	830	12	repeating	repeat	VERB
ddj-47	830	13	heptad	heptad	NOUN
ddj-47	830	14	unit	unit	NOUN
ddj-47	830	15	of	of	ADP
ddj-47	830	16	7	7	NUM
ddj-47	830	17	amino	amino	NOUN
ddj-47	830	18	-	-	PUNCT
ddj-47	830	19	acids	acid	NOUN
ddj-47	830	20	first	first	ADJ
ddj-47	830	21	and	and	CCONJ
ddj-47	830	22	fifth	fifth	ADJ
ddj-47	830	23	amino	amino	NOUN
ddj-47	830	24	-	-	PUNCT
ddj-47	830	25	acids	acid	NOUN
ddj-47	830	26	tend	tend	VERB
ddj-47	830	27	to	to	PART
ddj-47	830	28	be	be	AUX
ddj-47	830	29	conjugates	conjugate	NOUN
ddj-47	830	30	so	so	SCONJ
ddj-47	830	31	that	that	SCONJ
ddj-47	830	32	horizontal	horizontal	ADJ
ddj-47	830	33	flux	flux	NOUN
ddj-47	830	34	tubes	tube	NOUN
ddj-47	830	35	connecting	connect	VERB
ddj-47	830	36	first	first	ADV
ddj-47	830	37	and	and	CCONJ
ddj-47	830	38	fifth	fifth	ADJ
ddj-47	830	39	amino	amino	NOUN
ddj-47	830	40	-	-	PUNCT
ddj-47	830	41	acids	acid	NOUN
ddj-47	830	42	of	of	ADP
ddj-47	830	43	neighboring	neighboring	NOUN
ddj-47	830	44	could	could	AUX
ddj-47	830	45	be	be	AUX
ddj-47	830	46	responsible	responsible	ADJ
ddj-47	830	47	for	for	ADP
ddj-47	830	48	the	the	DET
ddj-47	830	49	stability	stability	NOUN
ddj-47	830	50	and	and	CCONJ
ddj-47	830	51	make	make	VERB
ddj-47	830	52	also	also	ADV
ddj-47	830	53	possible	possible	ADJ
ddj-47	830	54	the	the	DET
ddj-47	830	55	hydrophobic	hydrophobic	NOUN
ddj-47	830	56	bonding	bonding	NOUN
ddj-47	830	57	between	between	ADP
ddj-47	830	58	first	first	ADJ
ddj-47	830	59	and	and	CCONJ
ddj-47	830	60	fourth	fourth	ADJ
ddj-47	830	61	residues	residue	NOUN
ddj-47	830	62	.	.	PUNCT
ddj-47	831	1	collagen	collagen	NOUN
ddj-47	832	1	[	[	X
ddj-47	832	2	6	6	NUM
ddj-47	832	3	]	]	PUNCT
ddj-47	832	4	is	be	AUX
ddj-47	832	5	a	a	DET
ddj-47	832	6	triplet	triplet	NOUN
ddj-47	832	7	helix	helix	NOUN
ddj-47	832	8	and	and	CCONJ
ddj-47	832	9	appears	appear	VERB
ddj-47	832	10	as	as	ADP
ddj-47	832	11	a	a	DET
ddj-47	832	12	basic	basic	ADJ
ddj-47	832	13	constituent	constituent	NOUN
ddj-47	832	14	of	of	ADP
ddj-47	832	15	bones	bone	NOUN
ddj-47	832	16	,	,	PUNCT
ddj-47	832	17	tendons	tendon	NOUN
ddj-47	832	18	,	,	PUNCT
ddj-47	832	19	skin	skin	NOUN
ddj-47	832	20	,	,	PUNCT
ddj-47	832	21	ligaments	ligament	NOUN
ddj-47	832	22	,	,	PUNCT
ddj-47	832	23	blood	blood	NOUN
ddj-47	832	24	vessels	vessel	NOUN
ddj-47	832	25	,	,	PUNCT
ddj-47	832	26	and	and	CCONJ
ddj-47	832	27	supporting	support	VERB
ddj-47	832	28	membraneous	membraneous	ADJ
ddj-47	832	29	tissues	tissue	NOUN
ddj-47	832	30	.	.	PUNCT
ddj-47	833	1	the	the	DET
ddj-47	833	2	units	unit	NOUN
ddj-47	833	3	of	of	ADP
ddj-47	833	4	collagen	collagen	NOUN
ddj-47	833	5	triple	triple	ADJ
ddj-47	833	6	helix	helix	ADJ
ddj-47	833	7	consists	consist	NOUN
ddj-47	833	8	of	of	ADP
ddj-47	833	9	very	very	ADV
ddj-47	833	10	long	long	ADJ
ddj-47	833	11	repetitive	repetitive	ADJ
ddj-47	833	12	sequences	sequence	NOUN
ddj-47	833	13	of	of	ADP
ddj-47	833	14	type	type	NOUN
ddj-47	833	15	(	(	PUNCT
ddj-47	833	16	gly	gly	ADV
ddj-47	833	17	−xy	−xy	PROPN
ddj-47	833	18	)	)	PUNCT
ddj-47	833	19	n	n	CCONJ
ddj-47	833	20	,	,	PUNCT
ddj-47	833	21	with	with	ADP
ddj-47	833	22	a	a	DET
ddj-47	833	23	preponderance	preponderance	NOUN
ddj-47	833	24	of	of	ADP
ddj-47	833	25	pro	pro	NOUN
ddj-47	833	26	for	for	SCONJ
ddj-47	833	27	x	x	SYM
ddj-47	833	28	(	(	PUNCT
ddj-47	833	29	also	also	ADV
ddj-47	833	30	lys	lys	NOUN
ddj-47	833	31	residues	residue	NOUN
ddj-47	833	32	are	be	AUX
ddj-47	833	33	possible	possible	ADJ
ddj-47	833	34	)	)	PUNCT
ddj-47	833	35	.	.	PUNCT
ddj-47	834	1	gly	gly	ADJ
ddj-47	834	2	-	-	PUNCT
ddj-47	834	3	pro	pro	ADJ
ddj-47	834	4	-	-	ADJ
ddj-47	834	5	y	y	ADJ
ddj-47	834	6	and	and	CCONJ
ddj-47	834	7	gly	gly	ADV
ddj-47	834	8	-	-	PUNCT
ddj-47	834	9	x	x	NOUN
ddj-47	834	10	-	-	PROPN
ddj-47	834	11	hyp	hyp	PROPN
ddj-47	834	12	appear	appear	VERB
ddj-47	834	13	often	often	ADV
ddj-47	834	14	:	:	PUNCT
ddj-47	834	15	here	here	ADV
ddj-47	834	16	x	x	X
ddj-47	834	17	and	and	CCONJ
ddj-47	834	18	y	y	PROPN
ddj-47	834	19	are	be	AUX
ddj-47	834	20	arbitrary	arbitrary	ADJ
ddj-47	834	21	amino	amino	NOUN
ddj-47	834	22	-	-	PUNCT
ddj-47	834	23	acids	acid	NOUN
ddj-47	834	24	(	(	PUNCT
ddj-47	834	25	hyp	hyp	PROPN
ddj-47	834	26	denotes	denote	VERB
ddj-47	834	27	hydroxyprolin	hydroxyprolin	PROPN
ddj-47	834	28	with	with	ADP
ddj-47	834	29	o	o	PROPN
ddj-47	834	30	=	=	PUNCT
ddj-47	834	31	replaced	replace	VERB
ddj-47	834	32	with	with	ADP
ddj-47	834	33	oh	oh	INTJ
ddj-47	834	34	:	:	PUNCT
ddj-47	834	35	this	this	PRON
ddj-47	834	36	transforms	transform	VERB
ddj-47	834	37	pro	pro	ADJ
ddj-47	834	38	from	from	ADP
ddj-47	834	39	acceptor	acceptor	NOUN
ddj-47	834	40	to	to	ADP
ddj-47	834	41	donor	donor	NOUN
ddj-47	834	42	)	)	PUNCT
ddj-47	834	43	.	.	PUNCT
ddj-47	835	1	heating	heating	NOUN
ddj-47	835	2	of	of	ADP
ddj-47	835	3	collagen	collagen	NOUN
ddj-47	835	4	triple	triple	ADJ
ddj-47	835	5	helix	helix	NOUN
ddj-47	835	6	unfolds	unfold	VERB
ddj-47	835	7	it	it	PRON
ddj-47	835	8	and	and	CCONJ
ddj-47	835	9	converts	convert	VERB
ddj-47	835	10	it	it	PRON
ddj-47	835	11	to	to	PART
ddj-47	835	12	gelatin	gelatin	VERB
ddj-47	835	13	,	,	PUNCT
ddj-47	835	14	in	in	ADP
ddj-47	835	15	which	which	PRON
ddj-47	835	16	polypeptide	polypeptide	ADJ
ddj-47	835	17	chains	chain	NOUN
ddj-47	835	18	are	be	AUX
ddj-47	835	19	dissociated	dissociate	VERB
ddj-47	835	20	,	,	PUNCT
ddj-47	835	21	unraveled	unraveled	ADJ
ddj-47	835	22	and	and	CCONJ
ddj-47	835	23	disordered	disorder	VERB
ddj-47	835	24	.	.	PUNCT
ddj-47	836	1	cooling	cool	VERB
ddj-47	836	2	regenerates	regenerate	VERB
ddj-47	836	3	these	these	DET
ddj-47	836	4	conformations	conformation	NOUN
ddj-47	836	5	for	for	ADP
ddj-47	836	6	short	short	ADJ
ddj-47	836	7	stretches	stretch	NOUN
ddj-47	836	8	.	.	PUNCT
ddj-47	837	1	consider	consider	VERB
ddj-47	837	2	as	as	ADP
ddj-47	837	3	a	a	DET
ddj-47	837	4	example	example	NOUN
ddj-47	837	5	collagen	collagen	NOUN
ddj-47	837	6	triplet	triplet	NOUN
ddj-47	837	7	helix	helix	NOUN
ddj-47	837	8	[	[	X
ddj-47	837	9	6	6	NUM
ddj-47	837	10	]	]	PUNCT
ddj-47	837	11	having	have	VERB
ddj-47	837	12	gly	gly	NOUN
ddj-47	837	13	−	−	PROPN
ddj-47	837	14	pro−	pro−	PROPN
ddj-47	837	15	y	y	PROPN
ddj-47	837	16	as	as	ADP
ddj-47	837	17	a	a	DET
ddj-47	837	18	repeating	repeat	VERB
ddj-47	837	19	unit	unit	NOUN
ddj-47	837	20	.	.	PUNCT
ddj-47	838	1	assume	assume	VERB
ddj-47	838	2	y	y	PROPN
ddj-47	838	3	=	=	PUNCT
ddj-47	838	4	z	z	PROPN
ddj-47	838	5	or	or	CCONJ
ddj-47	838	6	y	y	PROPN
ddj-47	838	7	=	=	PUNCT
ddj-47	838	8	zc	zc	NOUN
ddj-47	838	9	pairing	pairing	NOUN
ddj-47	838	10	.	.	PUNCT
ddj-47	839	1	y	y	PROPN
ddj-47	839	2	−	−	PROPN
ddj-47	839	3	y	y	PROPN
ddj-47	839	4	hydrogen	hydrogen	NOUN
ddj-47	839	5	bonds	bond	NOUN
ddj-47	839	6	are	be	AUX
ddj-47	839	7	possible	possible	ADJ
ddj-47	839	8	if	if	SCONJ
ddj-47	839	9	y	y	PROPN
ddj-47	839	10	belongs	belong	VERB
ddj-47	839	11	to	to	ADP
ddj-47	839	12	the	the	DET
ddj-47	839	13	group	group	NOUN
ddj-47	839	14	t	t	PROPN
ddj-47	839	15	or	or	CCONJ
ddj-47	839	16	u	u	PROPN
ddj-47	839	17	.	.	PUNCT
ddj-47	840	1	only	only	ADV
ddj-47	840	2	phe	phe	PROPN
ddj-47	840	3	(	(	PUNCT
ddj-47	840	4	y	y	NOUN
ddj-47	840	5	=	=	PUNCT
ddj-47	840	6	zc	zc	PROPN
ddj-47	840	7	)	)	PUNCT
ddj-47	840	8	or	or	CCONJ
ddj-47	840	9	met	meet	VERB
ddj-47	840	10	(	(	PUNCT
ddj-47	840	11	y	y	NOUN
ddj-47	840	12	=	=	SYM
ddj-47	840	13	z	z	X
ddj-47	840	14	)	)	PUNCT
ddj-47	840	15	is	be	AUX
ddj-47	840	16	excluded	exclude	VERB
ddj-47	840	17	from	from	ADP
ddj-47	840	18	t	t	PROPN
ddj-47	840	19	.	.	PUNCT
ddj-47	841	1	y	y	NOUN
ddj-47	841	2	=	=	PUNCT
ddj-47	841	3	zc	zc	PROPN
ddj-47	841	4	corresponds	correspond	VERB
ddj-47	841	5	to	to	ADP
ddj-47	841	6	u	u	NOUN
ddj-47	841	7	=	=	SYM
ddj-47	841	8	{	{	PUNCT
ddj-47	841	9	tyr	tyr	PROPN
ddj-47	841	10	,	,	PUNCT
ddj-47	841	11	his	his	PRON
ddj-47	841	12	,	,	PUNCT
ddj-47	841	13	asn	asn	PROPN
ddj-47	841	14	,	,	PUNCT
ddj-47	841	15	asp	asp	PROPN
ddj-47	841	16	,	,	PUNCT
ddj-47	841	17	cys	cys	PROPN
ddj-47	841	18	,	,	PUNCT
ddj-47	841	19	arg	arg	PROPN
ddj-47	841	20	,	,	PUNCT
ddj-47	841	21	ser	ser	NOUN
ddj-47	841	22	,	,	PUNCT
ddj-47	841	23	gly	gly	NOUN
ddj-47	841	24	}	}	PUNCT
ddj-47	841	25	and	and	CCONJ
ddj-47	841	26	y	y	PROPN
ddj-47	841	27	=	=	PROPN
ddj-47	841	28	z	z	NOUN
ddj-47	841	29	to	to	ADP
ddj-47	841	30	u	u	NOUN
ddj-47	841	31	=	=	PUNCT
ddj-47	841	32	{	{	PUNCT
ddj-47	841	33	trp	trp	PROPN
ddj-47	841	34	,	,	PUNCT
ddj-47	841	35	gln	gln	PROPN
ddj-47	841	36	,	,	PUNCT
ddj-47	841	37	lys	lys	PROPN
ddj-47	841	38	,	,	PUNCT
ddj-47	841	39	glu	glu	PROPN
ddj-47	841	40	,	,	PUNCT
ddj-47	841	41	arg	arg	NOUN
ddj-47	841	42	,	,	PUNCT
ddj-47	841	43	gly	gly	ADV
ddj-47	841	44	}	}	PUNCT
ddj-47	841	45	.	.	PUNCT
ddj-47	842	1	this	this	DET
ddj-47	842	2	prediction	prediction	NOUN
ddj-47	842	3	might	might	AUX
ddj-47	842	4	kill	kill	VERB
ddj-47	842	5	the	the	DET
ddj-47	842	6	model	model	NOUN
ddj-47	842	7	.	.	PUNCT
ddj-47	843	1	glys	glys	PROPN
ddj-47	843	2	can	can	AUX
ddj-47	843	3	be	be	AUX
ddj-47	843	4	connected	connect	VERB
ddj-47	843	5	for	for	ADP
ddj-47	843	6	both	both	DET
ddj-47	843	7	options	option	NOUN
ddj-47	843	8	.	.	PUNCT
ddj-47	844	1	1	1	X
ddj-47	844	2	.	.	X
ddj-47	844	3	the	the	DET
ddj-47	844	4	first	first	ADJ
ddj-47	844	5	model	model	NOUN
ddj-47	844	6	goes	go	VERB
ddj-47	844	7	like	like	ADP
ddj-47	844	8	follows	follow	VERB
ddj-47	844	9	.	.	PUNCT
ddj-47	845	1	alpha	alpha	ADJ
ddj-47	845	2	helix	helix	NOUN
ddj-47	845	3	structure	structure	NOUN
ddj-47	845	4	is	be	AUX
ddj-47	845	5	guaranteed	guarantee	VERB
ddj-47	845	6	by	by	ADP
ddj-47	845	7	hydrogen	hydrogen	NOUN
ddj-47	845	8	bonds	bond	NOUN
ddj-47	845	9	between	between	ADP
ddj-47	845	10	the	the	DET
ddj-47	845	11	y	y	PROPN
ddj-47	845	12	:	:	PUNCT
ddj-47	845	13	s	s	VERB
ddj-47	845	14	inside	inside	ADP
ddj-47	845	15	each	each	DET
ddj-47	845	16	collagen	collagen	NOUN
ddj-47	845	17	unit	unit	NOUN
ddj-47	845	18	(	(	PUNCT
ddj-47	845	19	k	k	NOUN
ddj-47	845	20	=	=	SYM
ddj-47	845	21	3	3	NUM
ddj-47	845	22	)	)	PUNCT
ddj-47	845	23	.	.	PUNCT
ddj-47	846	1	the	the	DET
ddj-47	846	2	amino	amino	NOUN
ddj-47	846	3	-	-	PUNCT
ddj-47	846	4	acids	acid	NOUN
ddj-47	846	5	glyi	glyi	NOUN
ddj-47	846	6	,	,	PUNCT
ddj-47	846	7	i	i	PRON
ddj-47	846	8	=	=	NOUN
ddj-47	846	9	1	1	NUM
ddj-47	846	10	,	,	PUNCT
ddj-47	846	11	2	2	NUM
ddj-47	846	12	,	,	PUNCT
ddj-47	846	13	3	3	NUM
ddj-47	846	14	,	,	PUNCT
ddj-47	846	15	are	be	AUX
ddj-47	846	16	connected	connect	VERB
ddj-47	846	17	by	by	ADP
ddj-47	846	18	almost	almost	ADV
ddj-47	846	19	horizontal	horizontal	ADJ
ddj-47	846	20	flux	flux	NOUN
ddj-47	846	21	tubes	tube	NOUN
ddj-47	846	22	cyclically	cyclically	ADV
ddj-47	846	23	as	as	ADP
ddj-47	846	24	gly1−gly2	gly1−gly2	NOUN
ddj-47	846	25	,	,	PUNCT
ddj-47	846	26	gly2−gly3	gly2−gly3	NOUN
ddj-47	846	27	,	,	PUNCT
ddj-47	846	28	gly3−gly1	gly3−gly1	ADJ
ddj-47	846	29	.	.	PUNCT
ddj-47	847	1	this	this	DET
ddj-47	847	2	cyclic	cyclic	ADJ
ddj-47	847	3	bonding	bonding	NOUN
ddj-47	847	4	would	would	AUX
ddj-47	847	5	induce	induce	VERB
ddj-47	847	6	the	the	DET
ddj-47	847	7	coiling	coiling	NOUN
ddj-47	847	8	of	of	ADP
ddj-47	847	9	alpha	alpha	ADJ
ddj-47	847	10	helices	helix	NOUN
ddj-47	847	11	.	.	PUNCT
ddj-47	848	1	the	the	DET
ddj-47	848	2	free	free	ADJ
ddj-47	848	3	o	o	NOUN
ddj-47	848	4	=	=	NOUN
ddj-47	848	5	:	:	PUNCT
ddj-47	848	6	s	s	X
ddj-47	848	7	of	of	ADP
ddj-47	848	8	pros	pro	NOUN
ddj-47	848	9	could	could	AUX
ddj-47	848	10	act	act	VERB
ddj-47	848	11	as	as	ADP
ddj-47	848	12	acceptors	acceptor	NOUN
ddj-47	848	13	in	in	ADP
ddj-47	848	14	the	the	DET
ddj-47	848	15	hydrogen	hydrogen	NOUN
ddj-47	848	16	bonds	bond	NOUN
ddj-47	848	17	with	with	ADP
ddj-47	848	18	the	the	DET
ddj-47	848	19	surrounding	surround	VERB
ddj-47	848	20	water	water	NOUN
ddj-47	848	21	molecules	molecule	NOUN
ddj-47	848	22	(	(	PUNCT
ddj-47	848	23	for	for	ADP
ddj-47	848	24	instance	instance	NOUN
ddj-47	848	25	)	)	PUNCT
ddj-47	848	26	.	.	PUNCT
ddj-47	849	1	for	for	ADP
ddj-47	849	2	gly	gly	ADV
ddj-47	849	3	-	-	PUNCT
ddj-47	849	4	x	x	NOUN
ddj-47	849	5	-	-	PROPN
ddj-47	849	6	hyp	hyp	ADJ
ddj-47	849	7	one	one	PRON
ddj-47	849	8	would	would	AUX
ddj-47	849	9	have	have	VERB
ddj-47	849	10	similar	similar	ADJ
ddj-47	849	11	structure	structure	NOUN
ddj-47	849	12	but	but	CCONJ
ddj-47	849	13	hyp	hyp	PROPN
ddj-47	849	14	would	would	AUX
ddj-47	849	15	act	act	VERB
ddj-47	849	16	as	as	ADP
ddj-47	849	17	donor	donor	NOUN
ddj-47	849	18	in	in	ADP
ddj-47	849	19	the	the	DET
ddj-47	849	20	hydrogen	hydrogen	NOUN
ddj-47	849	21	bonds	bond	NOUN
ddj-47	849	22	with	with	ADP
ddj-47	849	23	water	water	NOUN
ddj-47	849	24	molecules	molecule	NOUN
ddj-47	849	25	.	.	PUNCT
ddj-47	850	1	the	the	DET
ddj-47	850	2	objection	objection	NOUN
ddj-47	850	3	is	be	AUX
ddj-47	850	4	that	that	SCONJ
ddj-47	850	5	if	if	SCONJ
ddj-47	850	6	long	long	ADJ
ddj-47	850	7	hydrogen	hydrogen	NOUN
ddj-47	850	8	bonds	bond	NOUN
ddj-47	850	9	are	be	AUX
ddj-47	850	10	possible	possible	ADJ
ddj-47	850	11	they	they	PRON
ddj-47	850	12	would	would	AUX
ddj-47	850	13	have	have	AUX
ddj-47	850	14	been	be	AUX
ddj-47	850	15	observed	observe	VERB
ddj-47	850	16	.	.	PUNCT
ddj-47	851	1	2	2	X
ddj-47	851	2	.	.	X
ddj-47	851	3	second	second	ADJ
ddj-47	851	4	model	model	NOUN
ddj-47	851	5	is	be	AUX
ddj-47	851	6	based	base	VERB
ddj-47	851	7	on	on	ADP
ddj-47	851	8	the	the	DET
ddj-47	851	9	philosophy	philosophy	NOUN
ddj-47	851	10	that	that	SCONJ
ddj-47	851	11	coiling	coiling	NOUN
ddj-47	851	12	is	be	AUX
ddj-47	851	13	a	a	DET
ddj-47	851	14	long	long	ADJ
ddj-47	851	15	range	range	NOUN
ddj-47	851	16	effect	effect	NOUN
ddj-47	851	17	and	and	CCONJ
ddj-47	851	18	must	must	AUX
ddj-47	851	19	be	be	AUX
ddj-47	851	20	due	due	ADJ
ddj-47	851	21	to	to	ADP
ddj-47	851	22	=	=	SYM
ddj-47	851	23	o	o	X
ddj-47	851	24	−o	−o	PROPN
ddj-47	851	25	=	=	SYM
ddj-47	851	26	flux	flux	PROPN
ddj-47	851	27	tubes	tubes	PROPN
ddj-47	851	28	.	.	PUNCT
ddj-47	852	1	gly	gly	PROPN
ddj-47	852	2	(	(	PUNCT
ddj-47	852	3	y	y	NOUN
ddj-47	852	4	=	=	PUNCT
ddj-47	852	5	g	g	PROPN
ddj-47	852	6	)	)	PUNCT
ddj-47	852	7	and	and	CCONJ
ddj-47	852	8	pro	pro	X
ddj-47	852	9	(	(	PUNCT
ddj-47	852	10	y	y	NOUN
ddj-47	852	11	=	=	SYM
ddj-47	852	12	c	c	X
ddj-47	852	13	)	)	PUNCT
ddj-47	852	14	can	can	AUX
ddj-47	852	15	be	be	AUX
ddj-47	852	16	connected	connect	VERB
ddj-47	852	17	for	for	ADP
ddj-47	852	18	both	both	DET
ddj-47	852	19	options	option	NOUN
ddj-47	852	20	but	but	CCONJ
ddj-47	852	21	only	only	ADV
ddj-47	852	22	by	by	ADP
ddj-47	852	23	single	single	ADJ
ddj-47	852	24	flux	flux	NOUN
ddj-47	852	25	tube	tube	NOUN
ddj-47	852	26	by	by	ADP
ddj-47	852	27	the	the	DET
ddj-47	852	28	special	special	ADJ
ddj-47	852	29	properties	property	NOUN
ddj-47	852	30	of	of	ADP
ddj-47	852	31	pro	pro	ADJ
ddj-47	852	32	:	:	PUNCT
ddj-47	852	33	this	this	DET
ddj-47	852	34	bonding	bonding	NOUN
ddj-47	852	35	would	would	AUX
ddj-47	852	36	give	give	VERB
ddj-47	852	37	n	n	PRON
ddj-47	852	38	,	,	PUNCT
ddj-47	852	39	n+	n+	NUM
ddj-47	852	40	4	4	NUM
ddj-47	852	41	hydrogen	hydrogen	NOUN
ddj-47	852	42	bond	bond	NOUN
ddj-47	852	43	of	of	ADP
ddj-47	852	44	alpha	alpha	ADJ
ddj-47	852	45	helix	helix	NOUN
ddj-47	852	46	.	.	PUNCT
ddj-47	853	1	the	the	DET
ddj-47	853	2	simultaneous	simultaneous	ADJ
ddj-47	853	3	presence	presence	NOUN
ddj-47	853	4	of	of	ADP
ddj-47	853	5	n	n	CCONJ
ddj-47	853	6	,	,	PUNCT
ddj-47	853	7	n+3	n+3	PROPN
ddj-47	853	8	y	y	PROPN
ddj-47	853	9	−y	−y	VERB
ddj-47	853	10	bonds	bond	NOUN
ddj-47	853	11	and	and	CCONJ
ddj-47	853	12	n	n	CCONJ
ddj-47	853	13	,	,	PUNCT
ddj-47	853	14	n+4	n+4	NUM
ddj-47	853	15	pro	pro	ADJ
ddj-47	853	16	-	-	ADJ
ddj-47	853	17	gly	gly	ADJ
ddj-47	853	18	bonds	bond	NOUN
ddj-47	853	19	might	might	AUX
ddj-47	853	20	be	be	AUX
ddj-47	853	21	made	make	VERB
ddj-47	853	22	possible	possible	ADJ
ddj-47	853	23	by	by	ADP
ddj-47	853	24	coiling	coil	VERB
ddj-47	853	25	.	.	PUNCT
ddj-47	854	1	hence	hence	ADV
ddj-47	854	2	the	the	DET
ddj-47	854	3	free	free	ADJ
ddj-47	854	4	o	o	NOUN
ddj-47	854	5	=	=	PUNCT
ddj-47	854	6	in	in	ADP
ddj-47	854	7	gly	gly	NOUN
ddj-47	854	8	could	could	AUX
ddj-47	854	9	be	be	AUX
ddj-47	854	10	connected	connect	VERB
ddj-47	854	11	with	with	ADP
ddj-47	854	12	a	a	DET
ddj-47	854	13	similar	similar	ADJ
ddj-47	854	14	o	o	NOUN
ddj-47	854	15	=	=	PUNCT
ddj-47	854	16	in	in	ADP
ddj-47	854	17	the	the	DET
ddj-47	854	18	neighboring	neighboring	NOUN
ddj-47	854	19	strand	strand	NOUN
ddj-47	854	20	.	.	PUNCT
ddj-47	855	1	gly1	gly1	PROPN
ddj-47	855	2	−	−	PROPN
ddj-47	855	3	gly2	gly2	PROPN
ddj-47	855	4	,	,	PUNCT
ddj-47	855	5	issn	issn	PROPN
ddj-47	855	6	:	:	PUNCT
ddj-47	855	7	2159	2159	NUM
ddj-47	855	8	-	-	SYM
ddj-47	855	9	0465	0465	NUM
ddj-47	855	10	dna	dna	PROPN
ddj-47	855	11	decipher	decipher	PROPN
ddj-47	855	12	journal	journal	PROPN
ddj-47	855	13	june	june	PROPN
ddj-47	855	14	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	855	15	published	publish	VERB
ddj-47	855	16	by	by	ADP
ddj-47	855	17	quantumdream	quantumdream	PROPN
ddj-47	855	18	,	,	PUNCT
ddj-47	855	19	inc	inc	PROPN
ddj-47	855	20	.	.	PROPN
ddj-47	855	21	dna	dna	PROPN
ddj-47	855	22	decipher	decipher	PROPN
ddj-47	855	23	journal	journal	NOUN
ddj-47	856	1	|	|	ADV
ddj-47	856	2	may	may	AUX
ddj-47	856	3	2013	2013	NUM
ddj-47	856	4	|	|	ADV
ddj-47	856	5	volume	volume	NOUN
ddj-47	856	6	3	3	NUM
ddj-47	856	7	|	|	NOUN
ddj-47	856	8	issue	issue	VERB
ddj-47	856	9	1	1	NUM
ddj-47	856	10	|	|	ADV
ddj-47	856	11	pp	pp	ADJ
ddj-47	856	12	.	.	PUNCT
ddj-47	857	1	58	58	NUM
ddj-47	857	2	-	-	SYM
ddj-47	857	3	88	88	NUM
ddj-47	857	4	83	83	NUM
ddj-47	857	5	pitkänen	pitkänen	NOUN
ddj-47	857	6	,	,	PUNCT
ddj-47	857	7	m.	m.	NOUN
ddj-47	857	8	,	,	PUNCT
ddj-47	857	9	a	a	DET
ddj-47	857	10	model	model	NOUN
ddj-47	857	11	for	for	ADP
ddj-47	857	12	protein	protein	NOUN
ddj-47	857	13	folding	folding	NOUN
ddj-47	857	14	and	and	CCONJ
ddj-47	857	15	biocatalysis	biocatalysis	NOUN
ddj-47	857	16	gly2−	gly2−	PROPN
ddj-47	857	17	gly3	gly3	PROPN
ddj-47	857	18	,	,	PUNCT
ddj-47	857	19	gly3−	gly3−	PROPN
ddj-47	857	20	gly1	gly1	PROPN
ddj-47	857	21	can	can	AUX
ddj-47	857	22	not	not	PART
ddj-47	857	23	form	form	VERB
ddj-47	857	24	a	a	DET
ddj-47	857	25	closed	closed	ADJ
ddj-47	857	26	cycle	cycle	NOUN
ddj-47	857	27	but	but	CCONJ
ddj-47	857	28	the	the	DET
ddj-47	857	29	repeating	repeat	VERB
ddj-47	857	30	helical	helical	ADJ
ddj-47	857	31	pattern	pattern	NOUN
ddj-47	857	32	gly1−	gly1−	ADJ
ddj-47	857	33	gly2	gly2	NOUN
ddj-47	857	34	,	,	PUNCT
ddj-47	857	35	gly3−	gly3−	PROPN
ddj-47	857	36	gly1	gly1	PROPN
ddj-47	857	37	,	,	PUNCT
ddj-47	857	38	gly2	gly2	PROPN
ddj-47	857	39	−	−	PROPN
ddj-47	857	40	gly3	gly3	PROPN
ddj-47	857	41	is	be	AUX
ddj-47	857	42	possible	possible	ADJ
ddj-47	857	43	and	and	CCONJ
ddj-47	857	44	could	could	AUX
ddj-47	857	45	produce	produce	VERB
ddj-47	857	46	the	the	DET
ddj-47	857	47	coiling	coiling	NOUN
ddj-47	857	48	.	.	PUNCT
ddj-47	858	1	4.4	4.4	NUM
ddj-47	858	2	model	model	NOUN
ddj-47	858	3	for	for	ADP
ddj-47	858	4	β	β	NOUN
ddj-47	858	5	sheets	sheet	NOUN
ddj-47	858	6	beta	beta	NOUN
ddj-47	858	7	strands	strand	NOUN
ddj-47	858	8	are	be	AUX
ddj-47	858	9	typically	typically	ADV
ddj-47	858	10	4	4	NUM
ddj-47	858	11	-	-	SYM
ddj-47	858	12	5	5	NUM
ddj-47	858	13	amino	amino	NOUN
ddj-47	858	14	-	-	PUNCT
ddj-47	858	15	acids	acid	NOUN
ddj-47	858	16	long	long	ADJ
ddj-47	858	17	structures	structure	NOUN
ddj-47	858	18	.	.	PUNCT
ddj-47	859	1	hydrogen	hydrogen	NOUN
ddj-47	859	2	bonds	bond	NOUN
ddj-47	859	3	are	be	AUX
ddj-47	859	4	of	of	ADP
ddj-47	859	5	type	type	NOUN
ddj-47	859	6	(	(	PUNCT
ddj-47	859	7	n	n	CCONJ
ddj-47	859	8	,	,	PUNCT
ddj-47	859	9	n+	n+	X
ddj-47	859	10	1	1	NUM
ddj-47	859	11	)	)	PUNCT
ddj-47	859	12	and	and	CCONJ
ddj-47	859	13	β	β	X
ddj-47	859	14	strands	strand	NOUN
ddj-47	859	15	have	have	VERB
ddj-47	859	16	2	2	NUM
ddj-47	859	17	amino	amino	NOUN
ddj-47	859	18	-	-	PUNCT
ddj-47	859	19	acids	acid	NOUN
ddj-47	859	20	per	per	ADP
ddj-47	859	21	turn	turn	NOUN
ddj-47	859	22	so	so	SCONJ
ddj-47	859	23	that	that	SCONJ
ddj-47	859	24	ri−1,i	ri−1,i	NOUN
ddj-47	859	25	and	and	CCONJ
ddj-47	859	26	ri	ri	NOUN
ddj-47	859	27	,	,	PUNCT
ddj-47	859	28	i+1	i+1	PRON
ddj-47	859	29	span	span	VERB
ddj-47	859	30	a	a	DET
ddj-47	859	31	vertical	vertical	ADJ
ddj-47	859	32	plane	plane	NOUN
ddj-47	859	33	and	and	CCONJ
ddj-47	859	34	the	the	DET
ddj-47	859	35	equations	equation	NOUN
ddj-47	859	36	of	of	ADP
ddj-47	859	37	the	the	DET
ddj-47	859	38	model	model	NOUN
ddj-47	859	39	are	be	AUX
ddj-47	859	40	trivially	trivially	ADV
ddj-47	859	41	satisfied	satisfied	ADJ
ddj-47	859	42	.	.	PUNCT
ddj-47	860	1	beta	beta	ADJ
ddj-47	860	2	strands	strand	NOUN
ddj-47	860	3	as	as	ADP
ddj-47	860	4	such	such	ADJ
ddj-47	860	5	are	be	AUX
ddj-47	860	6	not	not	PART
ddj-47	860	7	stable	stable	ADJ
ddj-47	860	8	.	.	PUNCT
ddj-47	861	1	beta	beta	ADJ
ddj-47	861	2	sheets	sheet	NOUN
ddj-47	861	3	[	[	X
ddj-47	861	4	5	5	NUM
ddj-47	861	5	]	]	PUNCT
ddj-47	861	6	consisting	consist	VERB
ddj-47	861	7	of	of	ADP
ddj-47	861	8	β	β	X
ddj-47	861	9	strands	strand	NOUN
ddj-47	861	10	which	which	PRON
ddj-47	861	11	can	can	AUX
ddj-47	861	12	be	be	AUX
ddj-47	861	13	either	either	CCONJ
ddj-47	861	14	parallel	parallel	ADJ
ddj-47	861	15	or	or	CCONJ
ddj-47	861	16	antiparallel	antiparallel	ADJ
ddj-47	861	17	and	and	CCONJ
ddj-47	861	18	are	be	AUX
ddj-47	861	19	glued	glue	VERB
ddj-47	861	20	together	together	ADV
ddj-47	861	21	by	by	ADP
ddj-47	861	22	the	the	DET
ddj-47	861	23	interactions	interaction	NOUN
ddj-47	861	24	between	between	ADP
ddj-47	861	25	residues	residue	NOUN
ddj-47	861	26	.	.	PUNCT
ddj-47	862	1	beta	beta	ADJ
ddj-47	862	2	sheets	sheet	NOUN
ddj-47	862	3	are	be	AUX
ddj-47	862	4	also	also	ADV
ddj-47	862	5	slightly	slightly	ADV
ddj-47	862	6	twisted	twist	VERB
ddj-47	862	7	which	which	PRON
ddj-47	862	8	relates	relate	VERB
ddj-47	862	9	to	to	ADP
ddj-47	862	10	the	the	DET
ddj-47	862	11	chirality	chirality	NOUN
ddj-47	862	12	of	of	ADP
ddj-47	862	13	amino	amino	NOUN
ddj-47	862	14	-	-	PUNCT
ddj-47	862	15	acids	acid	NOUN
ddj-47	862	16	.	.	PUNCT
ddj-47	863	1	in	in	ADP
ddj-47	863	2	the	the	DET
ddj-47	863	3	antiparallel	antiparallel	ADJ
ddj-47	863	4	case	case	NOUN
ddj-47	863	5	strand	strand	NOUN
ddj-47	863	6	returns	return	NOUN
ddj-47	863	7	back	back	ADV
ddj-47	863	8	and	and	CCONJ
ddj-47	863	9	forms	form	NOUN
ddj-47	863	10	at	at	ADP
ddj-47	863	11	the	the	DET
ddj-47	863	12	ends	end	NOUN
ddj-47	863	13	of	of	ADP
ddj-47	863	14	sheet	sheet	NOUN
ddj-47	863	15	a	a	DET
ddj-47	863	16	loop	loop	NOUN
ddj-47	863	17	so	so	SCONJ
ddj-47	863	18	that	that	SCONJ
ddj-47	863	19	so	so	ADV
ddj-47	863	20	called	call	VERB
ddj-47	863	21	β	β	NOUN
ddj-47	863	22	hairpin	hairpin	NOUN
ddj-47	863	23	is	be	AUX
ddj-47	863	24	formed	form	VERB
ddj-47	863	25	.	.	PUNCT
ddj-47	864	1	in	in	ADP
ddj-47	864	2	parallel	parallel	ADJ
ddj-47	864	3	case	case	NOUN
ddj-47	864	4	the	the	DET
ddj-47	864	5	strand	strand	NOUN
ddj-47	864	6	returns	return	NOUN
ddj-47	864	7	as	as	ADP
ddj-47	864	8	alpha	alpha	NOUN
ddj-47	864	9	helix	helix	NOUN
ddj-47	864	10	to	to	ADP
ddj-47	864	11	the	the	DET
ddj-47	864	12	lower	low	ADJ
ddj-47	864	13	end	end	NOUN
ddj-47	864	14	of	of	ADP
ddj-47	864	15	the	the	DET
ddj-47	864	16	sheet	sheet	NOUN
ddj-47	864	17	.	.	PUNCT
ddj-47	865	1	at	at	ADP
ddj-47	865	2	the	the	DET
ddj-47	865	3	time	time	NOUN
ddj-47	865	4	of	of	ADP
ddj-47	865	5	writing	writing	NOUN
ddj-47	865	6	of	of	ADP
ddj-47	865	7	[	[	X
ddj-47	865	8	13	13	NUM
ddj-47	865	9	]	]	PUNCT
ddj-47	865	10	the	the	DET
ddj-47	865	11	mechanism	mechanism	NOUN
ddj-47	865	12	of	of	ADP
ddj-47	865	13	formation	formation	NOUN
ddj-47	865	14	of	of	ADP
ddj-47	865	15	β	β	NOUN
ddj-47	865	16	sheets	sheet	NOUN
ddj-47	865	17	was	be	AUX
ddj-47	865	18	not	not	PART
ddj-47	865	19	understood	understand	VERB
ddj-47	865	20	.	.	PUNCT
ddj-47	866	1	if	if	SCONJ
ddj-47	866	2	horizontal	horizontal	ADJ
ddj-47	866	3	flux	flux	NOUN
ddj-47	866	4	tubes	tube	NOUN
ddj-47	866	5	between	between	ADP
ddj-47	866	6	neighboring	neighboring	NOUN
ddj-47	866	7	strands	strand	NOUN
ddj-47	866	8	assignable	assignable	ADJ
ddj-47	866	9	to	to	ADP
ddj-47	866	10	hydrogen	hydrogen	NOUN
ddj-47	866	11	bonds	bond	NOUN
ddj-47	866	12	or	or	CCONJ
ddj-47	866	13	=	=	NUM
ddj-47	866	14	o	o	ADJ
ddj-47	866	15	-	-	ADJ
ddj-47	866	16	o=	o=	ADJ
ddj-47	866	17	flux	flux	NOUN
ddj-47	866	18	tubes	tube	NOUN
ddj-47	866	19	between	between	ADP
ddj-47	866	20	the	the	DET
ddj-47	866	21	residues	residue	NOUN
ddj-47	866	22	are	be	AUX
ddj-47	866	23	responsible	responsible	ADJ
ddj-47	866	24	for	for	ADP
ddj-47	866	25	the	the	DET
ddj-47	866	26	stabilization	stabilization	NOUN
ddj-47	866	27	of	of	ADP
ddj-47	866	28	the	the	DET
ddj-47	866	29	beta	beta	ADJ
ddj-47	866	30	sheet	sheet	NOUN
ddj-47	866	31	structure	structure	NOUN
ddj-47	866	32	,	,	PUNCT
ddj-47	866	33	then	then	ADV
ddj-47	866	34	given	give	VERB
ddj-47	866	35	residue	residue	NOUN
ddj-47	866	36	must	must	AUX
ddj-47	866	37	have	have	VERB
ddj-47	866	38	two	two	NUM
ddj-47	866	39	hydrogen	hydrogen	NOUN
ddj-47	866	40	bonds	bond	NOUN
ddj-47	866	41	with	with	ADP
ddj-47	866	42	same	same	ADJ
ddj-47	866	43	length	length	NOUN
ddj-47	866	44	to	to	ADP
ddj-47	866	45	the	the	DET
ddj-47	866	46	amino	amino	NOUN
ddj-47	866	47	-	-	PUNCT
ddj-47	866	48	acids	acid	NOUN
ddj-47	866	49	at	at	ADP
ddj-47	866	50	right	right	ADV
ddj-47	866	51	and	and	CCONJ
ddj-47	866	52	left	leave	VERB
ddj-47	866	53	so	so	SCONJ
ddj-47	866	54	that	that	SCONJ
ddj-47	866	55	the	the	DET
ddj-47	866	56	contributions	contribution	NOUN
ddj-47	866	57	from	from	ADP
ddj-47	866	58	right	right	ADV
ddj-47	866	59	and	and	CCONJ
ddj-47	866	60	left	leave	VERB
ddj-47	866	61	side	side	NOUN
ddj-47	866	62	to	to	ADP
ddj-47	866	63	the	the	DET
ddj-47	866	64	force	force	NOUN
ddj-47	866	65	compensate	compensate	VERB
ddj-47	866	66	each	each	DET
ddj-47	866	67	other	other	ADJ
ddj-47	866	68	and	and	CCONJ
ddj-47	866	69	the	the	DET
ddj-47	866	70	force	force	NOUN
ddj-47	866	71	is	be	AUX
ddj-47	866	72	automatically	automatically	ADV
ddj-47	866	73	vertical	vertical	ADJ
ddj-47	866	74	as	as	SCONJ
ddj-47	866	75	implied	imply	VERB
ddj-47	866	76	by	by	ADP
ddj-47	866	77	the	the	DET
ddj-47	866	78	twisting	twisting	NOUN
ddj-47	866	79	angle	angle	NOUN
ddj-47	866	80	of	of	ADP
ddj-47	866	81	π	π	PROPN
ddj-47	866	82	per	per	ADP
ddj-47	866	83	amino	amino	NOUN
ddj-47	866	84	-	-	PUNCT
ddj-47	866	85	acid	acid	NOUN
ddj-47	866	86	in	in	ADP
ddj-47	866	87	beta	beta	NOUN
ddj-47	866	88	sheet	sheet	NOUN
ddj-47	866	89	.	.	PUNCT
ddj-47	867	1	for	for	ADP
ddj-47	867	2	self	self	NOUN
ddj-47	867	3	connecting	connect	VERB
ddj-47	867	4	flux	flux	NOUN
ddj-47	867	5	tubes	tube	NOUN
ddj-47	867	6	inside	inside	ADV
ddj-47	867	7	loops	loop	NOUN
ddj-47	867	8	the	the	DET
ddj-47	867	9	force	force	NOUN
ddj-47	867	10	would	would	AUX
ddj-47	867	11	be	be	AUX
ddj-47	867	12	in	in	ADP
ddj-47	867	13	the	the	DET
ddj-47	867	14	plane	plane	NOUN
ddj-47	867	15	of	of	ADP
ddj-47	867	16	loop	loop	NOUN
ddj-47	867	17	and	and	CCONJ
ddj-47	867	18	if	if	SCONJ
ddj-47	867	19	the	the	DET
ddj-47	867	20	force	force	NOUN
ddj-47	867	21	is	be	AUX
ddj-47	867	22	repulsive	repulsive	ADJ
ddj-47	867	23	loop	loop	NOUN
ddj-47	867	24	like	like	ADP
ddj-47	867	25	structure	structure	NOUN
ddj-47	867	26	is	be	AUX
ddj-47	867	27	expected	expect	VERB
ddj-47	867	28	.	.	PUNCT
ddj-47	868	1	the	the	DET
ddj-47	868	2	slight	slight	ADJ
ddj-47	868	3	twisting	twisting	NOUN
ddj-47	868	4	of	of	ADP
ddj-47	868	5	beta	beta	ADJ
ddj-47	868	6	sheet	sheet	NOUN
ddj-47	868	7	represents	represent	VERB
ddj-47	868	8	a	a	DET
ddj-47	868	9	challenge	challenge	NOUN
ddj-47	868	10	for	for	ADP
ddj-47	868	11	the	the	DET
ddj-47	868	12	model	model	NOUN
ddj-47	868	13	.	.	PUNCT
ddj-47	869	1	tgd	tgd	PROPN
ddj-47	869	2	predicts	predict	VERB
ddj-47	869	3	large	large	ADJ
ddj-47	869	4	parity	parity	NOUN
ddj-47	869	5	breaking	breaking	NOUN
ddj-47	869	6	and	and	CCONJ
ddj-47	869	7	thus	thus	ADV
ddj-47	869	8	the	the	DET
ddj-47	869	9	twisting	twisting	NOUN
ddj-47	869	10	and	and	CCONJ
ddj-47	869	11	preferred	preferred	ADJ
ddj-47	869	12	helicity	helicity	NOUN
ddj-47	869	13	at	at	ADP
ddj-47	869	14	the	the	DET
ddj-47	869	15	level	level	NOUN
ddj-47	869	16	of	of	ADP
ddj-47	869	17	principle	principle	NOUN
ddj-47	869	18	but	but	CCONJ
ddj-47	869	19	it	it	PRON
ddj-47	869	20	is	be	AUX
ddj-47	869	21	not	not	PART
ddj-47	869	22	clear	clear	ADJ
ddj-47	869	23	whether	whether	SCONJ
ddj-47	869	24	the	the	DET
ddj-47	869	25	simplest	simple	ADJ
ddj-47	869	26	model	model	NOUN
ddj-47	869	27	can	can	AUX
ddj-47	869	28	explain	explain	VERB
ddj-47	869	29	the	the	DET
ddj-47	869	30	twisting	twisting	NOUN
ddj-47	869	31	.	.	PUNCT
ddj-47	870	1	4.5	4.5	NUM
ddj-47	870	2	secondary	secondary	ADJ
ddj-47	870	3	protein	protein	NOUN
ddj-47	870	4	structures	structure	NOUN
ddj-47	870	5	protein	protein	NOUN
ddj-47	870	6	structures	structure	NOUN
ddj-47	870	7	are	be	AUX
ddj-47	870	8	divided	divide	VERB
ddj-47	870	9	into	into	ADP
ddj-47	870	10	four	four	NUM
ddj-47	870	11	classes	class	NOUN
ddj-47	870	12	on	on	ADP
ddj-47	870	13	basis	basis	NOUN
ddj-47	870	14	of	of	ADP
ddj-47	870	15	their	their	PRON
ddj-47	870	16	secondary	secondary	ADJ
ddj-47	870	17	structures	structure	NOUN
ddj-47	870	18	[	[	X
ddj-47	870	19	13	13	NUM
ddj-47	870	20	,	,	PUNCT
ddj-47	870	21	10	10	NUM
ddj-47	870	22	]	]	PUNCT
ddj-47	870	23	.	.	PUNCT
ddj-47	871	1	all	all	DET
ddj-47	871	2	these	these	DET
ddj-47	871	3	structures	structure	NOUN
ddj-47	871	4	are	be	AUX
ddj-47	871	5	consistent	consistent	ADJ
ddj-47	871	6	with	with	ADP
ddj-47	871	7	the	the	DET
ddj-47	871	8	general	general	ADJ
ddj-47	871	9	model	model	NOUN
ddj-47	871	10	.	.	PUNCT
ddj-47	872	1	1	1	NUM
ddj-47	872	2	.	.	X
ddj-47	872	3	(	(	PUNCT
ddj-47	872	4	α	α	X
ddj-47	872	5	)	)	PUNCT
ddj-47	872	6	containing	contain	VERB
ddj-47	872	7	only	only	ADV
ddj-47	872	8	α	α	DET
ddj-47	872	9	helices	helix	NOUN
ddj-47	872	10	,	,	PUNCT
ddj-47	872	11	which	which	PRON
ddj-47	872	12	must	must	AUX
ddj-47	872	13	stabilize	stabilize	VERB
ddj-47	872	14	each	each	DET
ddj-47	872	15	other	other	ADJ
ddj-47	872	16	by	by	ADP
ddj-47	872	17	horizontal	horizontal	ADJ
ddj-47	872	18	flux	flux	PROPN
ddj-47	872	19	tubes	tubes	PROPN
ddj-47	872	20	.	.	PUNCT
ddj-47	873	1	2	2	X
ddj-47	873	2	.	.	PUNCT
ddj-47	873	3	(	(	PUNCT
ddj-47	873	4	β	β	X
ddj-47	873	5	)	)	PUNCT
ddj-47	873	6	containing	contain	VERB
ddj-47	873	7	only	only	ADV
ddj-47	873	8	β	β	NOUN
ddj-47	873	9	sheets	sheet	NOUN
ddj-47	873	10	both	both	DET
ddj-47	873	11	usually	usually	ADV
ddj-47	873	12	antiparallel	antiparallel	ADJ
ddj-47	873	13	,	,	PUNCT
ddj-47	873	14	which	which	PRON
ddj-47	873	15	appear	appear	VERB
ddj-47	873	16	always	always	ADV
ddj-47	873	17	in	in	ADP
ddj-47	873	18	pairs	pair	NOUN
ddj-47	873	19	packing	pack	VERB
ddj-47	873	20	against	against	ADP
ddj-47	873	21	each	each	DET
ddj-47	873	22	other	other	ADJ
ddj-47	873	23	.	.	PUNCT
ddj-47	874	1	horizontal	horizontal	ADJ
ddj-47	874	2	flux	flux	PROPN
ddj-47	874	3	tubes	tube	NOUN
ddj-47	874	4	connecting	connect	VERB
ddj-47	874	5	the	the	DET
ddj-47	874	6	β	β	NOUN
ddj-47	874	7	sheets	sheet	NOUN
ddj-47	874	8	must	must	AUX
ddj-47	874	9	act	act	VERB
ddj-47	874	10	as	as	ADP
ddj-47	874	11	stabilizers	stabilizer	NOUN
ddj-47	874	12	.	.	PUNCT
ddj-47	875	1	3	3	X
ddj-47	875	2	.	.	X
ddj-47	875	3	(	(	PUNCT
ddj-47	875	4	α	α	NOUN
ddj-47	875	5	+	+	NOUN
ddj-47	875	6	β	β	NOUN
ddj-47	875	7	)	)	PUNCT
ddj-47	875	8	proteins	protein	NOUN
ddj-47	875	9	can	can	AUX
ddj-47	875	10	contain	contain	VERB
ddj-47	875	11	only	only	ADV
ddj-47	875	12	single	single	ADJ
ddj-47	875	13	β	β	X
ddj-47	875	14	sheet	sheet	NOUN
ddj-47	875	15	,	,	PUNCT
ddj-47	875	16	usually	usually	ADV
ddj-47	875	17	antiparallel	antiparallel	ADJ
ddj-47	875	18	,	,	PUNCT
ddj-47	875	19	with	with	ADP
ddj-47	875	20	α	α	PROPN
ddj-47	875	21	helices	helix	NOUN
ddj-47	875	22	clustering	cluster	VERB
ddj-47	875	23	together	together	ADV
ddj-47	875	24	at	at	ADP
ddj-47	875	25	one	one	NUM
ddj-47	875	26	or	or	CCONJ
ddj-47	875	27	both	both	DET
ddj-47	875	28	ends	end	NOUN
ddj-47	875	29	of	of	ADP
ddj-47	875	30	the	the	DET
ddj-47	875	31	β	β	NOUN
ddj-47	875	32	sheet	sheet	NOUN
ddj-47	875	33	.	.	PUNCT
ddj-47	876	1	antiparallel	antiparallel	ADJ
ddj-47	876	2	β	β	NOUN
ddj-47	876	3	sheet	sheet	NOUN
ddj-47	876	4	stabilizes	stabilize	VERB
ddj-47	876	5	itself	itself	PRON
ddj-47	876	6	.	.	PUNCT
ddj-47	877	1	4	4	X
ddj-47	877	2	.	.	X
ddj-47	877	3	(	(	PUNCT
ddj-47	877	4	α	α	X
ddj-47	877	5	/	/	SYM
ddj-47	877	6	β	β	NOUN
ddj-47	877	7	)	)	PUNCT
ddj-47	877	8	in	in	ADP
ddj-47	877	9	which	which	PRON
ddj-47	877	10	sheets	sheet	NOUN
ddj-47	877	11	and	and	CCONJ
ddj-47	877	12	helices	helix	NOUN
ddj-47	877	13	interact	interact	VERB
ddj-47	877	14	and	and	CCONJ
ddj-47	877	15	often	often	ADV
ddj-47	877	16	alternate	alternate	VERB
ddj-47	877	17	along	along	ADP
ddj-47	877	18	the	the	DET
ddj-47	877	19	polypeptide	polypeptide	ADJ
ddj-47	877	20	chain	chain	NOUN
ddj-47	877	21	.	.	PUNCT
ddj-47	878	1	single	single	ADJ
ddj-47	878	2	parallel	parallel	ADJ
ddj-47	878	3	β	β	NOUN
ddj-47	878	4	sheet	sheet	NOUN
ddj-47	878	5	and	and	CCONJ
ddj-47	878	6	so	so	ADV
ddj-47	878	7	called	call	VERB
ddj-47	878	8	β	β	PROPN
ddj-47	878	9	barrel	barrel	NOUN
ddj-47	878	10	,	,	PUNCT
ddj-47	878	11	kind	kind	ADV
ddj-47	878	12	of	of	ADP
ddj-47	878	13	sandwich	sandwich	NOUN
ddj-47	878	14	like	like	ADP
ddj-47	878	15	structure	structure	NOUN
ddj-47	878	16	,	,	PUNCT
ddj-47	878	17	are	be	AUX
ddj-47	878	18	basic	basic	ADJ
ddj-47	878	19	examples	example	NOUN
ddj-47	878	20	here	here	ADV
ddj-47	878	21	.	.	PUNCT
ddj-47	879	1	the	the	DET
ddj-47	879	2	most	most	ADV
ddj-47	879	3	spectacular	spectacular	ADJ
ddj-47	879	4	barrel	barrel	NOUN
ddj-47	879	5	consists	consist	VERB
ddj-47	879	6	of	of	ADP
ddj-47	879	7	4	4	NUM
ddj-47	879	8	+	+	SYM
ddj-47	879	9	4	4	NUM
ddj-47	879	10	parallel	parallel	ADJ
ddj-47	879	11	β	β	NOUN
ddj-47	879	12	strands	strand	NOUN
ddj-47	879	13	with	with	ADP
ddj-47	879	14	α	α	PROPN
ddj-47	879	15	helices	helix	NOUN
ddj-47	879	16	outside	outside	ADP
ddj-47	879	17	the	the	DET
ddj-47	879	18	barrel	barrel	NOUN
ddj-47	879	19	.	.	PUNCT
ddj-47	880	1	concerning	concern	VERB
ddj-47	880	2	the	the	DET
ddj-47	880	3	organization	organization	NOUN
ddj-47	880	4	of	of	ADP
ddj-47	880	5	alpha	alpha	NOUN
ddj-47	880	6	helices	helix	NOUN
ddj-47	880	7	and	and	CCONJ
ddj-47	880	8	beta	beta	NOUN
ddj-47	880	9	sheets	sheet	NOUN
ddj-47	880	10	to	to	ADP
ddj-47	880	11	higher	high	ADJ
ddj-47	880	12	level	level	NOUN
ddj-47	880	13	structures	structure	NOUN
ddj-47	880	14	the	the	DET
ddj-47	880	15	simplest	simple	ADJ
ddj-47	880	16	guess	guess	NOUN
ddj-47	880	17	is	be	AUX
ddj-47	880	18	that	that	SCONJ
ddj-47	880	19	the	the	DET
ddj-47	880	20	large	large	ADJ
ddj-47	880	21	planck	planck	NOUN
ddj-47	880	22	constant	constant	ADJ
ddj-47	880	23	flux	flux	NOUN
ddj-47	880	24	tubes	tube	NOUN
ddj-47	880	25	connecting	connect	VERB
ddj-47	880	26	random	random	ADJ
ddj-47	880	27	coil	coil	NOUN
ddj-47	880	28	portions	portion	NOUN
ddj-47	880	29	of	of	ADP
ddj-47	880	30	the	the	DET
ddj-47	880	31	amino	amino	NOUN
ddj-47	880	32	-	-	PUNCT
ddj-47	880	33	acid	acid	NOUN
ddj-47	880	34	sequence	sequence	NOUN
ddj-47	880	35	with	with	ADP
ddj-47	880	36	each	each	DET
ddj-47	880	37	other	other	ADJ
ddj-47	880	38	or	or	CCONJ
ddj-47	880	39	with	with	ADP
ddj-47	880	40	free	free	ADJ
ddj-47	880	41	o	o	NOUN
ddj-47	880	42	=	=	PUNCT
ddj-47	880	43	accompanying	accompany	VERB
ddj-47	880	44	pros	pro	NOUN
ddj-47	880	45	.	.	PUNCT
ddj-47	881	1	the	the	DET
ddj-47	881	2	mere	mere	ADJ
ddj-47	881	3	assumption	assumption	NOUN
ddj-47	881	4	that	that	SCONJ
ddj-47	881	5	a	a	DET
ddj-47	881	6	given	give	VERB
ddj-47	881	7	portion	portion	NOUN
ddj-47	881	8	of	of	ADP
ddj-47	881	9	coil	coil	NOUN
ddj-47	881	10	has	have	AUX
ddj-47	881	11	only	only	ADV
ddj-47	881	12	long	long	ADJ
ddj-47	881	13	flux	flux	NOUN
ddj-47	881	14	tubes	tube	NOUN
ddj-47	881	15	to	to	ADP
ddj-47	881	16	distant	distant	ADJ
ddj-47	881	17	parts	part	NOUN
ddj-47	881	18	of	of	ADP
ddj-47	881	19	the	the	DET
ddj-47	881	20	protein	protein	NOUN
ddj-47	881	21	could	could	AUX
ddj-47	881	22	explain	explain	VERB
ddj-47	881	23	random	random	ADJ
ddj-47	881	24	coil	coil	NOUN
ddj-47	881	25	character	character	NOUN
ddj-47	881	26	.	.	PUNCT
ddj-47	882	1	the	the	DET
ddj-47	882	2	failure	failure	NOUN
ddj-47	882	3	of	of	ADP
ddj-47	882	4	y	y	PROPN
ddj-47	882	5	=	=	SYM
ddj-47	882	6	z	z	NOUN
ddj-47	882	7	condition	condition	NOUN
ddj-47	882	8	implies	imply	VERB
ddj-47	882	9	this	this	PRON
ddj-47	882	10	too	too	ADV
ddj-47	882	11	.	.	PUNCT
ddj-47	883	1	the	the	DET
ddj-47	883	2	notion	notion	NOUN
ddj-47	883	3	of	of	ADP
ddj-47	883	4	long	long	ADJ
ddj-47	883	5	hydrogen	hydrogen	NOUN
ddj-47	883	6	bond	bond	NOUN
ddj-47	883	7	is	be	AUX
ddj-47	883	8	somewhat	somewhat	ADV
ddj-47	883	9	questionable	questionable	ADJ
ddj-47	883	10	and	and	CCONJ
ddj-47	883	11	long	long	ADJ
ddj-47	883	12	flux	flux	NOUN
ddj-47	883	13	tubes	tube	NOUN
ddj-47	883	14	connecting	connect	VERB
ddj-47	883	15	=	=	PUNCT
ddj-47	883	16	o	o	NOUN
ddj-47	883	17	:	:	PUNCT
ddj-47	883	18	s	s	AUX
ddj-47	883	19	look	look	VERB
ddj-47	883	20	more	more	ADV
ddj-47	883	21	favorable	favorable	ADJ
ddj-47	883	22	.	.	PUNCT
ddj-47	884	1	also	also	ADV
ddj-47	884	2	free	free	ADJ
ddj-47	884	3	o	o	NOUN
ddj-47	885	1	=	=	NOUN
ddj-47	885	2	:	:	PUNCT
ddj-47	885	3	s	s	X
ddj-47	885	4	inside	inside	ADP
ddj-47	885	5	alpha	alpha	NOUN
ddj-47	885	6	helices	helix	NOUN
ddj-47	885	7	and	and	CCONJ
ddj-47	885	8	beta	beta	ADJ
ddj-47	885	9	strands	strand	NOUN
ddj-47	885	10	could	could	AUX
ddj-47	885	11	be	be	AUX
ddj-47	885	12	connected	connect	VERB
ddj-47	885	13	in	in	ADP
ddj-47	885	14	this	this	DET
ddj-47	885	15	manner	manner	NOUN
ddj-47	885	16	.	.	PUNCT
ddj-47	886	1	4.6	4.6	NUM
ddj-47	886	2	model	model	NOUN
ddj-47	886	3	for	for	ADP
ddj-47	886	4	protein	protein	NOUN
ddj-47	886	5	-	-	PUNCT
ddj-47	886	6	protein	protein	NOUN
ddj-47	886	7	binding	bind	VERB
ddj-47	886	8	sites	site	NOUN
ddj-47	886	9	binding	bind	VERB
ddj-47	886	10	sites	site	NOUN
ddj-47	886	11	obey	obey	VERB
ddj-47	886	12	geometric	geometric	ADJ
ddj-47	886	13	complementarity	complementarity	NOUN
ddj-47	886	14	and	and	CCONJ
ddj-47	886	15	are	be	AUX
ddj-47	886	16	known	know	VERB
ddj-47	886	17	to	to	PART
ddj-47	886	18	resemble	resemble	VERB
ddj-47	886	19	protein	protein	NOUN
ddj-47	886	20	interior	interior	NOUN
ddj-47	886	21	being	be	AUX
ddj-47	886	22	closely	closely	ADV
ddj-47	886	23	packed	pack	VERB
ddj-47	886	24	.	.	PUNCT
ddj-47	887	1	this	this	PRON
ddj-47	887	2	is	be	AUX
ddj-47	887	3	also	also	ADV
ddj-47	887	4	taken	take	VERB
ddj-47	887	5	to	to	PART
ddj-47	887	6	mean	mean	VERB
ddj-47	887	7	that	that	SCONJ
ddj-47	887	8	amino	amino	NOUN
ddj-47	887	9	-	-	PUNCT
ddj-47	887	10	acid	acid	NOUN
ddj-47	887	11	chains	chain	NOUN
ddj-47	887	12	run	run	VERB
ddj-47	887	13	parallel	parallel	ADJ
ddj-47	887	14	to	to	ADP
ddj-47	887	15	the	the	DET
ddj-47	887	16	surface	surface	NOUN
ddj-47	887	17	although	although	SCONJ
ddj-47	887	18	this	this	DET
ddj-47	887	19	statement	statement	NOUN
ddj-47	887	20	is	be	AUX
ddj-47	887	21	not	not	PART
ddj-47	887	22	made	make	VERB
ddj-47	887	23	explicitly	explicitly	ADV
ddj-47	887	24	in	in	ADP
ddj-47	887	25	[	[	X
ddj-47	887	26	13	13	NUM
ddj-47	887	27	]	]	PUNCT
ddj-47	887	28	:	:	PUNCT
ddj-47	887	29	one	one	PRON
ddj-47	887	30	could	could	AUX
ddj-47	887	31	see	see	VERB
ddj-47	887	32	binding	bind	VERB
ddj-47	887	33	sites	site	NOUN
ddj-47	887	34	as	as	ADP
ddj-47	887	35	part	part	NOUN
ddj-47	887	36	of	of	ADP
ddj-47	887	37	interior	interior	NOUN
ddj-47	887	38	which	which	PRON
ddj-47	887	39	is	be	AUX
ddj-47	887	40	in	in	ADP
ddj-47	887	41	a	a	DET
ddj-47	887	42	direct	direct	ADJ
ddj-47	887	43	contact	contact	NOUN
ddj-47	887	44	with	with	ADP
ddj-47	887	45	exterior	exterior	ADJ
ddj-47	887	46	,	,	PUNCT
ddj-47	887	47	somewhat	somewhat	ADV
ddj-47	887	48	like	like	ADP
ddj-47	887	49	a	a	DET
ddj-47	887	50	sensory	sensory	ADJ
ddj-47	887	51	organ	organ	NOUN
ddj-47	887	52	like	like	ADP
ddj-47	887	53	eye	eye	NOUN
ddj-47	887	54	.	.	PUNCT
ddj-47	888	1	the	the	DET
ddj-47	888	2	interface	interface	NOUN
ddj-47	888	3	between	between	ADP
ddj-47	888	4	similar	similar	ADJ
ddj-47	888	5	sized	sized	ADJ
ddj-47	888	6	proteins	protein	NOUN
ddj-47	888	7	is	be	AUX
ddj-47	888	8	large	large	ADJ
ddj-47	888	9	and	and	CCONJ
ddj-47	888	10	tends	tend	VERB
ddj-47	888	11	to	to	PART
ddj-47	888	12	be	be	AUX
ddj-47	888	13	flat	flat	ADJ
ddj-47	888	14	(	(	PUNCT
ddj-47	888	15	not	not	PART
ddj-47	888	16	expected	expect	VERB
ddj-47	888	17	if	if	SCONJ
ddj-47	888	18	proteins	protein	NOUN
ddj-47	888	19	make	make	VERB
ddj-47	888	20	sharp	sharp	ADJ
ddj-47	888	21	turns	turn	NOUN
ddj-47	888	22	at	at	ADP
ddj-47	888	23	the	the	DET
ddj-47	888	24	interface	interface	NOUN
ddj-47	888	25	rather	rather	ADV
ddj-47	888	26	than	than	ADP
ddj-47	888	27	running	run	VERB
ddj-47	888	28	parallel	parallel	NOUN
ddj-47	888	29	to	to	ADP
ddj-47	888	30	the	the	DET
ddj-47	888	31	surface	surface	NOUN
ddj-47	888	32	)	)	PUNCT
ddj-47	888	33	.	.	PUNCT
ddj-47	889	1	various	various	ADJ
ddj-47	889	2	bonds	bond	NOUN
ddj-47	889	3	eliminate	eliminate	VERB
ddj-47	889	4	electromagnetic	electromagnetic	ADJ
ddj-47	889	5	interactions	interaction	NOUN
ddj-47	889	6	at	at	ADP
ddj-47	889	7	the	the	DET
ddj-47	889	8	interface	interface	NOUN
ddj-47	889	9	.	.	PUNCT
ddj-47	890	1	the	the	DET
ddj-47	890	2	basic	basic	ADJ
ddj-47	890	3	mechanism	mechanism	NOUN
ddj-47	890	4	of	of	ADP
ddj-47	890	5	binding	binding	NOUN
ddj-47	890	6	would	would	AUX
ddj-47	890	7	be	be	AUX
ddj-47	890	8	based	base	VERB
ddj-47	890	9	on	on	ADP
ddj-47	890	10	the	the	DET
ddj-47	890	11	reduction	reduction	NOUN
ddj-47	890	12	of	of	ADP
ddj-47	890	13	planck	planck	NOUN
ddj-47	890	14	constant	constant	ADJ
ddj-47	890	15	for	for	ADP
ddj-47	890	16	the	the	DET
ddj-47	890	17	flux	flux	PROPN
ddj-47	890	18	tubes	tube	NOUN
ddj-47	890	19	connecting	connect	VERB
ddj-47	890	20	amino	amino	NOUN
ddj-47	890	21	-	-	PUNCT
ddj-47	890	22	acids	acid	NOUN
ddj-47	890	23	.	.	PUNCT
ddj-47	891	1	the	the	DET
ddj-47	891	2	high	high	ADJ
ddj-47	891	3	flexibility	flexibility	NOUN
ddj-47	891	4	of	of	ADP
ddj-47	891	5	y	y	PROPN
ddj-47	891	6	=	=	PROPN
ddj-47	891	7	z	z	PROPN
ddj-47	891	8	and	and	CCONJ
ddj-47	891	9	y	y	PROPN
ddj-47	891	10	−zc	−zc	NOUN
ddj-47	891	11	pairings	pairing	NOUN
ddj-47	891	12	-especially	-especially	ADV
ddj-47	891	13	in	in	ADP
ddj-47	891	14	the	the	DET
ddj-47	891	15	hydrophobic	hydrophobic	NOUN
ddj-47	891	16	regions	region	NOUN
ddj-47	891	17	in	in	ADP
ddj-47	891	18	the	the	DET
ddj-47	891	19	center	center	NOUN
ddj-47	891	20	of	of	ADP
ddj-47	891	21	the	the	DET
ddj-47	891	22	binding	bind	VERB
ddj-47	891	23	site	site	NOUN
ddj-47	891	24	where	where	SCONJ
ddj-47	891	25	it	it	PRON
ddj-47	891	26	allows	allow	VERB
ddj-47	891	27	all	all	PRON
ddj-47	891	28	but	but	CCONJ
ddj-47	891	29	met	meet	VERB
ddj-47	891	30	-	-	PUNCT
ddj-47	891	31	met	meet	VERB
ddj-47	891	32	and	and	CCONJ
ddj-47	891	33	phe	phe	PROPN
ddj-47	891	34	-	-	PUNCT
ddj-47	891	35	phe	phe	PROPN
ddj-47	891	36	flux	flux	PROPN
ddj-47	891	37	tubesmakes	tubesmake	VERB
ddj-47	891	38	it	it	PRON
ddj-47	891	39	an	an	DET
ddj-47	891	40	excellent	excellent	ADJ
ddj-47	891	41	candidate	candidate	NOUN
ddj-47	891	42	for	for	ADP
ddj-47	891	43	a	a	DET
ddj-47	891	44	folding	fold	VERB
ddj-47	891	45	code	code	NOUN
ddj-47	891	46	.	.	PUNCT
ddj-47	892	1	issn	issn	PROPN
ddj-47	892	2	:	:	PUNCT
ddj-47	892	3	2159	2159	NUM
ddj-47	892	4	-	-	SYM
ddj-47	892	5	0465	0465	NUM
ddj-47	892	6	dna	dna	PROPN
ddj-47	892	7	decipher	decipher	PROPN
ddj-47	892	8	journal	journal	PROPN
ddj-47	892	9	june	june	PROPN
ddj-47	892	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	892	11	published	publish	VERB
ddj-47	892	12	by	by	ADP
ddj-47	892	13	quantumdream	quantumdream	PROPN
ddj-47	892	14	,	,	PUNCT
ddj-47	892	15	inc	inc	PROPN
ddj-47	892	16	.	.	PROPN
ddj-47	892	17	dna	dna	PROPN
ddj-47	892	18	decipher	decipher	PROPN
ddj-47	892	19	journal	journal	NOUN
ddj-47	893	1	|	|	ADV
ddj-47	893	2	may	may	AUX
ddj-47	893	3	2013	2013	NUM
ddj-47	893	4	|	|	ADV
ddj-47	893	5	volume	volume	NOUN
ddj-47	893	6	3	3	NUM
ddj-47	893	7	|	|	NOUN
ddj-47	893	8	issue	issue	VERB
ddj-47	893	9	1	1	NUM
ddj-47	893	10	|	|	ADV
ddj-47	893	11	pp	pp	ADJ
ddj-47	893	12	.	.	PUNCT
ddj-47	894	1	58	58	NUM
ddj-47	894	2	-	-	SYM
ddj-47	894	3	88	88	NUM
ddj-47	894	4	84	84	NUM
ddj-47	894	5	pitkänen	pitkänen	NOUN
ddj-47	894	6	,	,	PUNCT
ddj-47	894	7	m.	m.	NOUN
ddj-47	894	8	,	,	PUNCT
ddj-47	894	9	a	a	DET
ddj-47	894	10	model	model	NOUN
ddj-47	894	11	for	for	ADP
ddj-47	894	12	protein	protein	NOUN
ddj-47	894	13	folding	folding	NOUN
ddj-47	894	14	and	and	CCONJ
ddj-47	894	15	biocatalysis	biocatalysis	NOUN
ddj-47	894	16	the	the	DET
ddj-47	894	17	question	question	NOUN
ddj-47	894	18	is	be	AUX
ddj-47	894	19	whether	whether	SCONJ
ddj-47	894	20	complementary	complementary	ADJ
ddj-47	894	21	of	of	ADP
ddj-47	894	22	bonded	bond	VERB
ddj-47	894	23	amino	amino	NOUN
ddj-47	894	24	-	-	PUNCT
ddj-47	894	25	acids	acid	NOUN
ddj-47	894	26	should	should	AUX
ddj-47	894	27	induce	induce	VERB
ddj-47	894	28	the	the	DET
ddj-47	894	29	geometric	geometric	ADJ
ddj-47	894	30	complementary	complementary	NOUN
ddj-47	894	31	of	of	ADP
ddj-47	894	32	the	the	DET
ddj-47	894	33	binding	bind	VERB
ddj-47	894	34	sites	site	NOUN
ddj-47	894	35	in	in	ADP
ddj-47	894	36	the	the	DET
ddj-47	894	37	proposed	propose	VERB
ddj-47	894	38	model	model	NOUN
ddj-47	894	39	.	.	PUNCT
ddj-47	895	1	1	1	X
ddj-47	895	2	.	.	X
ddj-47	895	3	the	the	DET
ddj-47	895	4	binding	bind	VERB
ddj-47	895	5	sites	site	NOUN
ddj-47	895	6	could	could	AUX
ddj-47	895	7	be	be	AUX
ddj-47	895	8	connected	connect	VERB
ddj-47	895	9	by	by	ADP
ddj-47	895	10	only	only	ADV
ddj-47	895	11	very	very	ADV
ddj-47	895	12	few	few	ADJ
ddj-47	895	13	flux	flux	NOUN
ddj-47	895	14	tubes	tube	NOUN
ddj-47	895	15	or	or	CCONJ
ddj-47	895	16	flux	flux	PROPN
ddj-47	895	17	tubes	tube	NOUN
ddj-47	895	18	could	could	AUX
ddj-47	895	19	connect	connect	VERB
ddj-47	895	20	all	all	DET
ddj-47	895	21	amino	amino	NOUN
ddj-47	895	22	-	-	PUNCT
ddj-47	895	23	acids	acid	NOUN
ddj-47	895	24	in	in	ADP
ddj-47	895	25	a	a	DET
ddj-47	895	26	pairwise	pairwise	NOUN
ddj-47	895	27	manner	manner	NOUN
ddj-47	895	28	:	:	PUNCT
ddj-47	895	29	the	the	DET
ddj-47	895	30	first	first	ADJ
ddj-47	895	31	extreme	extreme	NOUN
ddj-47	895	32	is	be	AUX
ddj-47	895	33	highly	highly	ADV
ddj-47	895	34	flexible	flexible	ADJ
ddj-47	895	35	whereas	whereas	SCONJ
ddj-47	895	36	second	second	ADJ
ddj-47	895	37	extreme	extreme	NOUN
ddj-47	895	38	would	would	AUX
ddj-47	895	39	produce	produce	VERB
ddj-47	895	40	maximal	maximal	ADJ
ddj-47	895	41	selectivity	selectivity	NOUN
ddj-47	895	42	.	.	PUNCT
ddj-47	896	1	complementary	complementary	ADJ
ddj-47	896	2	can	can	AUX
ddj-47	896	3	thus	thus	ADV
ddj-47	896	4	be	be	AUX
ddj-47	896	5	partial	partial	ADJ
ddj-47	896	6	and	and	CCONJ
ddj-47	896	7	its	its	PRON
ddj-47	896	8	degree	degree	NOUN
ddj-47	896	9	is	be	AUX
ddj-47	896	10	predicted	predict	VERB
ddj-47	896	11	to	to	PART
ddj-47	896	12	correlate	correlate	VERB
ddj-47	896	13	with	with	ADP
ddj-47	896	14	the	the	DET
ddj-47	896	15	selectivity	selectivity	NOUN
ddj-47	896	16	.	.	PUNCT
ddj-47	897	1	the	the	DET
ddj-47	897	2	interpretation	interpretation	NOUN
ddj-47	897	3	of	of	ADP
ddj-47	897	4	disappearance	disappearance	NOUN
ddj-47	897	5	of	of	ADP
ddj-47	897	6	flux	flux	NOUN
ddj-47	897	7	tubes	tube	NOUN
ddj-47	897	8	as	as	ADP
ddj-47	897	9	molecular	molecular	ADJ
ddj-47	897	10	ageing	ageing	NOUN
ddj-47	897	11	conforms	conform	VERB
ddj-47	897	12	with	with	ADP
ddj-47	897	13	the	the	DET
ddj-47	897	14	gradual	gradual	ADJ
ddj-47	897	15	loss	loss	NOUN
ddj-47	897	16	of	of	ADP
ddj-47	897	17	selectivity	selectivity	NOUN
ddj-47	897	18	implying	imply	VERB
ddj-47	897	19	reduced	reduce	VERB
ddj-47	897	20	performance	performance	NOUN
ddj-47	897	21	of	of	ADP
ddj-47	897	22	immune	immune	ADJ
ddj-47	897	23	system	system	NOUN
ddj-47	897	24	.	.	PUNCT
ddj-47	898	1	2	2	X
ddj-47	898	2	.	.	X
ddj-47	898	3	from	from	ADP
ddj-47	898	4	the	the	DET
ddj-47	898	5	example	example	NOUN
ddj-47	898	6	of	of	ADP
ddj-47	898	7	[	[	X
ddj-47	898	8	13	13	NUM
ddj-47	898	9	]	]	PUNCT
ddj-47	898	10	about	about	ADP
ddj-47	898	11	the	the	DET
ddj-47	898	12	interface	interface	NOUN
ddj-47	898	13	of	of	ADP
ddj-47	898	14	identical	identical	ADJ
ddj-47	898	15	proteins	protein	NOUN
ddj-47	898	16	in	in	ADP
ddj-47	898	17	the	the	DET
ddj-47	898	18	quaternary	quaternary	ADJ
ddj-47	898	19	structure	structure	NOUN
ddj-47	898	20	of	of	ADP
ddj-47	898	21	dimer	dimer	NOUN
ddj-47	898	22	one	one	NUM
ddj-47	898	23	learns	learn	VERB
ddj-47	898	24	that	that	SCONJ
ddj-47	898	25	the	the	DET
ddj-47	898	26	geometrically	geometrically	ADV
ddj-47	898	27	and	and	CCONJ
ddj-47	898	28	physically	physically	ADV
ddj-47	898	29	conjugate	conjugate	ADJ
ddj-47	898	30	interfaces	interface	NOUN
ddj-47	898	31	of	of	ADP
ddj-47	898	32	identical	identical	ADJ
ddj-47	898	33	monomers	monomer	NOUN
ddj-47	898	34	pair	pair	VERB
ddj-47	898	35	to	to	PART
ddj-47	898	36	form	form	VERB
ddj-47	898	37	sandwich	sandwich	NOUN
ddj-47	898	38	like	like	ADP
ddj-47	898	39	structures	structure	NOUN
ddj-47	898	40	via	via	ADP
ddj-47	898	41	so	so	ADV
ddj-47	898	42	called	call	VERB
ddj-47	898	43	isologous	isologous	ADJ
ddj-47	898	44	and	and	CCONJ
ddj-47	898	45	heterologous	heterologous	ADJ
ddj-47	898	46	pairings	pairing	NOUN
ddj-47	898	47	such	such	ADJ
ddj-47	898	48	that	that	SCONJ
ddj-47	898	49	valleys	valley	NOUN
ddj-47	898	50	and	and	CCONJ
ddj-47	898	51	hills	hill	NOUN
ddj-47	898	52	fit	fit	ADJ
ddj-47	898	53	.	.	PUNCT
ddj-47	899	1	the	the	DET
ddj-47	899	2	interfaces	interface	NOUN
ddj-47	899	3	are	be	AUX
ddj-47	899	4	reported	report	VERB
ddj-47	899	5	to	to	PART
ddj-47	899	6	resemble	resemble	VERB
ddj-47	899	7	closely	closely	ADV
ddj-47	899	8	packed	pack	VERB
ddj-47	899	9	protein	protein	NOUN
ddj-47	899	10	interiors	interior	NOUN
ddj-47	899	11	and	and	CCONJ
ddj-47	899	12	contain	contain	VERB
ddj-47	899	13	hydrophobic	hydrophobic	NOUN
ddj-47	899	14	residues	residue	NOUN
ddj-47	899	15	in	in	ADP
ddj-47	899	16	the	the	DET
ddj-47	899	17	center	center	NOUN
ddj-47	899	18	and	and	CCONJ
ddj-47	899	19	hydrophilic	hydrophilic	ADJ
ddj-47	899	20	residues	residue	NOUN
ddj-47	899	21	at	at	ADP
ddj-47	899	22	periphery	periphery	NOUN
ddj-47	899	23	.	.	PUNCT
ddj-47	900	1	in	in	ADP
ddj-47	900	2	the	the	DET
ddj-47	900	3	case	case	NOUN
ddj-47	900	4	of	of	ADP
ddj-47	900	5	identical	identical	ADJ
ddj-47	900	6	monomers	monomer	NOUN
ddj-47	900	7	y	y	PROPN
ddj-47	900	8	−	−	PROPN
ddj-47	901	1	z	z	PROPN
ddj-47	902	1	and	and	CCONJ
ddj-47	902	2	y	y	PROPN
ddj-47	902	3	−	−	PROPN
ddj-47	902	4	zc	zc	PROPN
ddj-47	902	5	pairing	pairing	NOUN
ddj-47	902	6	is	be	AUX
ddj-47	902	7	possible	possible	ADJ
ddj-47	902	8	for	for	ADP
ddj-47	902	9	a	a	DET
ddj-47	902	10	very	very	ADV
ddj-47	902	11	wide	wide	ADJ
ddj-47	902	12	class	class	NOUN
ddj-47	902	13	of	of	ADP
ddj-47	902	14	amino	amino	NOUN
ddj-47	902	15	-	-	PUNCT
ddj-47	902	16	acids	acid	NOUN
ddj-47	902	17	.	.	PUNCT
ddj-47	903	1	the	the	DET
ddj-47	903	2	prediction	prediction	NOUN
ddj-47	903	3	in	in	ADP
ddj-47	903	4	the	the	DET
ddj-47	903	5	case	case	NOUN
ddj-47	903	6	of	of	ADP
ddj-47	903	7	identical	identical	ADJ
ddj-47	903	8	monomers	monomer	NOUN
ddj-47	903	9	would	would	AUX
ddj-47	903	10	be	be	AUX
ddj-47	903	11	that	that	SCONJ
ddj-47	903	12	catalyst	catalyst	NOUN
ddj-47	903	13	sites	site	NOUN
ddj-47	903	14	contain	contain	VERB
ddj-47	903	15	only	only	ADV
ddj-47	903	16	very	very	ADV
ddj-47	903	17	few	few	ADJ
ddj-47	903	18	amino	amino	NOUN
ddj-47	903	19	-	-	PUNCT
ddj-47	903	20	acids	acid	NOUN
ddj-47	903	21	in	in	ADP
ddj-47	903	22	the	the	DET
ddj-47	903	23	sets	set	NOUN
ddj-47	903	24	v	v	NOUN
ddj-47	903	25	and	and	CCONJ
ddj-47	903	26	t	t	PROPN
ddj-47	903	27	defined	define	VERB
ddj-47	903	28	previously	previously	ADV
ddj-47	903	29	.	.	PUNCT
ddj-47	904	1	3	3	X
ddj-47	904	2	.	.	X
ddj-47	904	3	also	also	ADV
ddj-47	904	4	the	the	DET
ddj-47	904	5	flux	flux	NOUN
ddj-47	904	6	tubes	tube	NOUN
ddj-47	904	7	between	between	ADP
ddj-47	904	8	=	=	NOUN
ddj-47	904	9	o	o	NOUN
ddj-47	904	10	atoms	atom	NOUN
ddj-47	904	11	could	could	AUX
ddj-47	904	12	be	be	AUX
ddj-47	904	13	in	in	ADP
ddj-47	904	14	key	key	ADJ
ddj-47	904	15	role	role	NOUN
ddj-47	904	16	in	in	ADP
ddj-47	904	17	the	the	DET
ddj-47	904	18	protein	protein	NOUN
ddj-47	904	19	-	-	PUNCT
ddj-47	904	20	ligand	ligand	NOUN
ddj-47	904	21	interaction	interaction	NOUN
ddj-47	904	22	.	.	PUNCT
ddj-47	905	1	the	the	DET
ddj-47	905	2	interfaces	interface	NOUN
ddj-47	905	3	can	can	AUX
ddj-47	905	4	be	be	AUX
ddj-47	905	5	thought	think	VERB
ddj-47	905	6	of	of	ADP
ddj-47	905	7	as	as	ADP
ddj-47	905	8	cutting	cut	VERB
ddj-47	905	9	protein	protein	NOUN
ddj-47	905	10	along	along	ADP
ddj-47	905	11	its	its	PRON
ddj-47	905	12	interior	interior	NOUN
ddj-47	905	13	:	:	PUNCT
ddj-47	905	14	in	in	ADP
ddj-47	905	15	center	center	NOUN
ddj-47	905	16	there	there	PRON
ddj-47	905	17	are	be	VERB
ddj-47	905	18	hydrophobic	hydrophobic	NOUN
ddj-47	905	19	amino	amino	NOUN
ddj-47	905	20	-	-	PUNCT
ddj-47	905	21	acids	acid	NOUN
ddj-47	905	22	and	and	CCONJ
ddj-47	905	23	in	in	ADP
ddj-47	905	24	periphery	periphery	ADJ
ddj-47	905	25	hydrophilic	hydrophilic	ADJ
ddj-47	905	26	ones	one	NOUN
ddj-47	905	27	.	.	PUNCT
ddj-47	906	1	the	the	DET
ddj-47	906	2	=	=	NOUN
ddj-47	906	3	o−o	o−o	NOUN
ddj-47	906	4	=	=	SYM
ddj-47	906	5	flux	flux	NOUN
ddj-47	906	6	tubes	tube	NOUN
ddj-47	906	7	would	would	AUX
ddj-47	906	8	connect	connect	VERB
ddj-47	906	9	periphery	periphery	NOUN
ddj-47	906	10	of	of	ADP
ddj-47	906	11	a	a	DET
ddj-47	906	12	(	(	PUNCT
ddj-47	906	13	b	b	NOUN
ddj-47	906	14	)	)	PUNCT
ddj-47	906	15	to	to	ADP
ddj-47	906	16	the	the	DET
ddj-47	906	17	center	center	NOUN
ddj-47	906	18	of	of	ADP
ddj-47	906	19	b	b	PROPN
ddj-47	906	20	(	(	PUNCT
ddj-47	906	21	a	a	NOUN
ddj-47	906	22	)	)	PUNCT
ddj-47	906	23	.	.	PUNCT
ddj-47	907	1	the	the	DET
ddj-47	907	2	reduction	reduction	NOUN
ddj-47	907	3	of	of	ADP
ddj-47	907	4	planck	planck	NOUN
ddj-47	907	5	constant	constant	ADJ
ddj-47	907	6	for	for	ADP
ddj-47	907	7	would	would	AUX
ddj-47	907	8	reduce	reduce	VERB
ddj-47	907	9	the	the	DET
ddj-47	907	10	length	length	NOUN
ddj-47	907	11	of	of	ADP
ddj-47	907	12	these	these	DET
ddj-47	907	13	flux	flux	NOUN
ddj-47	907	14	tubes	tube	NOUN
ddj-47	907	15	and	and	CCONJ
ddj-47	907	16	bring	bring	VERB
ddj-47	907	17	protein	protein	NOUN
ddj-47	907	18	and	and	CCONJ
ddj-47	907	19	ligand	ligand	VERB
ddj-47	907	20	close	close	ADV
ddj-47	907	21	to	to	ADP
ddj-47	907	22	each	each	DET
ddj-47	907	23	other	other	ADJ
ddj-47	907	24	so	so	SCONJ
ddj-47	907	25	that	that	SCONJ
ddj-47	907	26	hydrogen	hydrogen	NOUN
ddj-47	907	27	bond	bond	NOUN
ddj-47	907	28	formation	formation	NOUN
ddj-47	907	29	between	between	ADP
ddj-47	907	30	residues	residue	NOUN
ddj-47	907	31	could	could	AUX
ddj-47	907	32	being	be	AUX
ddj-47	907	33	.	.	PUNCT
ddj-47	908	1	in	in	ADP
ddj-47	908	2	this	this	DET
ddj-47	908	3	process	process	NOUN
ddj-47	908	4	the	the	DET
ddj-47	908	5	flux	flux	NOUN
ddj-47	908	6	tube	tube	NOUN
ddj-47	908	7	connecting	connect	VERB
ddj-47	908	8	o	o	NOUN
ddj-47	909	1	=	=	X
ddj-47	909	2	:	:	PUNCT
ddj-47	909	3	s	s	X
ddj-47	909	4	could	could	AUX
ddj-47	909	5	by	by	ADP
ddj-47	909	6	reconnection	reconnection	NOUN
ddj-47	909	7	transform	transform	NOUN
ddj-47	909	8	to	to	ADP
ddj-47	909	9	two	two	NUM
ddj-47	909	10	hydrogen	hydrogen	NOUN
ddj-47	909	11	bonds	bond	NOUN
ddj-47	909	12	connecting	connect	VERB
ddj-47	909	13	o	o	NOUN
ddj-47	910	1	=	=	PRON
ddj-47	910	2	:	:	PUNCT
ddj-47	910	3	s	s	VERB
ddj-47	910	4	to	to	PART
ddj-47	910	5	water	water	NOUN
ddj-47	910	6	molecules	molecule	NOUN
ddj-47	910	7	.	.	PUNCT
ddj-47	911	1	after	after	ADP
ddj-47	911	2	the	the	DET
ddj-47	911	3	catalysis	catalysis	NOUN
ddj-47	911	4	the	the	DET
ddj-47	911	5	reverse	reverse	NOUN
ddj-47	911	6	of	of	ADP
ddj-47	911	7	this	this	DET
ddj-47	911	8	process	process	NOUN
ddj-47	911	9	would	would	AUX
ddj-47	911	10	occur	occur	VERB
ddj-47	911	11	.	.	PUNCT
ddj-47	912	1	4	4	X
ddj-47	912	2	.	.	X
ddj-47	912	3	for	for	ADP
ddj-47	912	4	single	single	ADJ
ddj-47	912	5	flux	flux	NOUN
ddj-47	912	6	tube	tube	NOUN
ddj-47	912	7	between	between	ADP
ddj-47	912	8	o	o	PROPN
ddj-47	913	1	=	=	NOUN
ddj-47	913	2	:	:	PUNCT
ddj-47	913	3	s	s	X
ddj-47	913	4	of	of	ADP
ddj-47	913	5	amino	amino	NOUN
ddj-47	913	6	-	-	PUNCT
ddj-47	913	7	acid	acid	NOUN
ddj-47	913	8	and	and	CCONJ
ddj-47	913	9	ligand	ligand	VERB
ddj-47	913	10	the	the	DET
ddj-47	913	11	force	force	NOUN
ddj-47	913	12	would	would	AUX
ddj-47	913	13	be	be	AUX
ddj-47	913	14	along	along	ADP
ddj-47	913	15	the	the	DET
ddj-47	913	16	line	line	NOUN
ddj-47	913	17	ri	ri	PROPN
ddj-47	913	18	,	,	PUNCT
ddj-47	913	19	k(i	k(i	PROPN
ddj-47	913	20	)	)	PUNCT
ddj-47	913	21	connecting	connect	VERB
ddj-47	913	22	them	they	PRON
ddj-47	913	23	,	,	PUNCT
ddj-47	913	24	in	in	ADP
ddj-47	913	25	the	the	DET
ddj-47	913	26	improbable	improbable	ADJ
ddj-47	913	27	case	case	NOUN
ddj-47	913	28	that	that	SCONJ
ddj-47	913	29	the	the	DET
ddj-47	913	30	amino	amino	NOUN
ddj-47	913	31	-	-	PUNCT
ddj-47	913	32	acids	acid	NOUN
ddj-47	913	33	of	of	ADP
ddj-47	913	34	protein	protein	NOUN
ddj-47	913	35	and	and	CCONJ
ddj-47	913	36	ligand	ligand	NOUN
ddj-47	913	37	are	be	AUX
ddj-47	913	38	connected	connect	VERB
ddj-47	913	39	by	by	ADP
ddj-47	913	40	two	two	NUM
ddj-47	913	41	hydrogen	hydrogen	NOUN
ddj-47	913	42	bond	bond	NOUN
ddj-47	913	43	like	like	ADP
ddj-47	913	44	flux	flux	NOUN
ddj-47	913	45	tubes	tube	NOUN
ddj-47	913	46	the	the	DET
ddj-47	913	47	force	force	NOUN
ddj-47	913	48	is	be	AUX
ddj-47	913	49	in	in	ADP
ddj-47	913	50	the	the	DET
ddj-47	913	51	direction	direction	NOUN
ddj-47	913	52	of	of	ADP
ddj-47	913	53	ri	ri	PROPN
ddj-47	913	54	,	,	PUNCT
ddj-47	913	55	k1(i	k1(i	PROPN
ddj-47	913	56	)	)	PUNCT
ddj-47	913	57	+	+	NUM
ddj-47	913	58	ri	ri	PROPN
ddj-47	913	59	,	,	PUNCT
ddj-47	913	60	k2(i	k2(i	PROPN
ddj-47	913	61	)	)	PUNCT
ddj-47	913	62	.	.	PUNCT
ddj-47	914	1	the	the	DET
ddj-47	914	2	force	force	NOUN
ddj-47	914	3	is	be	AUX
ddj-47	914	4	predicted	predict	VERB
ddj-47	914	5	to	to	PART
ddj-47	914	6	be	be	AUX
ddj-47	914	7	in	in	ADP
ddj-47	914	8	the	the	DET
ddj-47	914	9	plane	plane	NOUN
ddj-47	914	10	spanned	span	VERB
ddj-47	914	11	by	by	ADP
ddj-47	914	12	ri+1,i	ri+1,i	PROPN
ddj-47	914	13	and	and	CCONJ
ddj-47	914	14	ri	ri	PROPN
ddj-47	914	15	,	,	PUNCT
ddj-47	914	16	i−1	i−1	PROPN
ddj-47	914	17	for	for	ADP
ddj-47	914	18	protein	protein	NOUN
ddj-47	914	19	and	and	CCONJ
ddj-47	914	20	in	in	ADP
ddj-47	914	21	the	the	DET
ddj-47	914	22	corresponding	corresponding	ADJ
ddj-47	914	23	plane	plane	NOUN
ddj-47	914	24	for	for	ADP
ddj-47	914	25	ligand	ligand	NOUN
ddj-47	914	26	.	.	PUNCT
ddj-47	915	1	this	this	PRON
ddj-47	915	2	is	be	AUX
ddj-47	915	3	true	true	ADJ
ddj-47	915	4	if	if	SCONJ
ddj-47	915	5	the	the	DET
ddj-47	915	6	amino	amino	NOUN
ddj-47	915	7	-	-	PUNCT
ddj-47	915	8	acid	acid	NOUN
ddj-47	915	9	sequence	sequence	NOUN
ddj-47	915	10	at	at	ADP
ddj-47	915	11	the	the	DET
ddj-47	915	12	surface	surface	NOUN
ddj-47	915	13	is	be	AUX
ddj-47	915	14	slightly	slightly	ADV
ddj-47	915	15	curved	curve	VERB
ddj-47	915	16	in	in	ADP
ddj-47	915	17	the	the	DET
ddj-47	915	18	direction	direction	NOUN
ddj-47	915	19	of	of	ADP
ddj-47	915	20	the	the	DET
ddj-47	915	21	conjugate	conjugate	ADJ
ddj-47	915	22	amino	amino	NOUN
ddj-47	915	23	-	-	PUNCT
ddj-47	915	24	acid	acid	NOUN
ddj-47	915	25	or	or	CCONJ
ddj-47	915	26	in	in	ADP
ddj-47	915	27	opposite	opposite	ADJ
ddj-47	915	28	direction	direction	NOUN
ddj-47	915	29	.	.	PUNCT
ddj-47	916	1	this	this	DET
ddj-47	916	2	condition	condition	NOUN
ddj-47	916	3	is	be	AUX
ddj-47	916	4	guaranteed	guarantee	VERB
ddj-47	916	5	by	by	ADP
ddj-47	916	6	the	the	DET
ddj-47	916	7	geometric	geometric	ADJ
ddj-47	916	8	complementarity	complementarity	NOUN
ddj-47	916	9	.	.	PUNCT
ddj-47	917	1	5	5	X
ddj-47	917	2	.	.	X
ddj-47	917	3	the	the	DET
ddj-47	917	4	mechanism	mechanism	NOUN
ddj-47	917	5	for	for	ADP
ddj-47	917	6	the	the	DET
ddj-47	917	7	formation	formation	NOUN
ddj-47	917	8	of	of	ADP
ddj-47	917	9	ligand	ligand	NOUN
ddj-47	917	10	-	-	PUNCT
ddj-47	917	11	protein	protein	NOUN
ddj-47	917	12	pairs	pair	NOUN
ddj-47	917	13	would	would	AUX
ddj-47	917	14	be	be	AUX
ddj-47	917	15	very	very	ADV
ddj-47	917	16	simple	simple	ADJ
ddj-47	917	17	:	:	PUNCT
ddj-47	917	18	the	the	DET
ddj-47	917	19	binding	bind	VERB
ddj-47	917	20	sites	site	NOUN
ddj-47	917	21	of	of	ADP
ddj-47	917	22	protein	protein	NOUN
ddj-47	917	23	and	and	CCONJ
ddj-47	917	24	ligand	ligand	NOUN
ddj-47	917	25	could	could	AUX
ddj-47	917	26	be	be	AUX
ddj-47	917	27	coded	code	VERB
ddj-47	917	28	by	by	ADP
ddj-47	917	29	same	same	ADJ
ddj-47	917	30	gene	gene	NOUN
ddj-47	917	31	or	or	CCONJ
ddj-47	917	32	its	its	PRON
ddj-47	917	33	mutation	mutation	NOUN
ddj-47	917	34	respecting	respect	VERB
ddj-47	917	35	the	the	DET
ddj-47	917	36	y	y	NOUN
ddj-47	917	37	so	so	SCONJ
ddj-47	917	38	that	that	SCONJ
ddj-47	917	39	the	the	DET
ddj-47	917	40	formation	formation	NOUN
ddj-47	917	41	of	of	ADP
ddj-47	917	42	copies	copy	NOUN
ddj-47	917	43	of	of	ADP
ddj-47	917	44	gene	gene	NOUN
ddj-47	917	45	in	in	ADP
ddj-47	917	46	dna	dna	PROPN
ddj-47	917	47	would	would	AUX
ddj-47	917	48	be	be	AUX
ddj-47	917	49	the	the	DET
ddj-47	917	50	simplest	simple	ADJ
ddj-47	917	51	mechanism	mechanism	NOUN
ddj-47	917	52	to	to	PART
ddj-47	917	53	guarantee	guarantee	VERB
ddj-47	917	54	the	the	DET
ddj-47	917	55	prerequisites	prerequisite	NOUN
ddj-47	917	56	for	for	ADP
ddj-47	917	57	geometric	geometric	ADJ
ddj-47	917	58	conjugation	conjugation	NOUN
ddj-47	917	59	.	.	PUNCT
ddj-47	918	1	geometric	geometric	ADJ
ddj-47	918	2	conjugation	conjugation	NOUN
ddj-47	918	3	would	would	AUX
ddj-47	918	4	result	result	VERB
ddj-47	918	5	automatically	automatically	ADV
ddj-47	918	6	if	if	SCONJ
ddj-47	918	7	the	the	DET
ddj-47	918	8	flux	flux	NOUN
ddj-47	918	9	tubes	tube	NOUN
ddj-47	918	10	between	between	ADP
ddj-47	918	11	interior	interior	NOUN
ddj-47	918	12	and	and	CCONJ
ddj-47	918	13	periphery	periphery	NOUN
ddj-47	918	14	of	of	ADP
ddj-47	918	15	binding	bind	VERB
ddj-47	918	16	site	site	NOUN
ddj-47	918	17	determine	determine	VERB
ddj-47	918	18	its	its	PRON
ddj-47	918	19	shape	shape	NOUN
ddj-47	918	20	.	.	PUNCT
ddj-47	919	1	6	6	X
ddj-47	919	2	.	.	X
ddj-47	919	3	slow	slow	ADJ
ddj-47	919	4	enough	enough	ADJ
ddj-47	919	5	relative	relative	ADJ
ddj-47	919	6	motion	motion	NOUN
ddj-47	919	7	of	of	ADP
ddj-47	919	8	molecules	molecule	NOUN
ddj-47	919	9	induces	induce	VERB
ddj-47	919	10	an	an	DET
ddj-47	919	11	adiabatic	adiabatic	ADJ
ddj-47	919	12	variation	variation	NOUN
ddj-47	919	13	of	of	ADP
ddj-47	919	14	the	the	DET
ddj-47	919	15	shapes	shape	NOUN
ddj-47	919	16	of	of	ADP
ddj-47	919	17	the	the	DET
ddj-47	919	18	binding	bind	VERB
ddj-47	919	19	sites	site	NOUN
ddj-47	919	20	so	so	SCONJ
ddj-47	919	21	that	that	SCONJ
ddj-47	919	22	lock	lock	NOUN
ddj-47	919	23	and	and	CCONJ
ddj-47	919	24	key	key	ADJ
ddj-47	919	25	mechanism	mechanism	NOUN
ddj-47	919	26	becomes	become	VERB
ddj-47	919	27	dynamical	dynamical	ADJ
ddj-47	919	28	.	.	PUNCT
ddj-47	920	1	the	the	DET
ddj-47	920	2	simplest	simple	ADJ
ddj-47	920	3	possibility	possibility	NOUN
ddj-47	920	4	is	be	AUX
ddj-47	920	5	that	that	SCONJ
ddj-47	920	6	binding	bind	VERB
ddj-47	920	7	site	site	NOUN
ddj-47	920	8	and	and	CCONJ
ddj-47	920	9	its	its	PRON
ddj-47	920	10	conjugate	conjugate	NOUN
ddj-47	920	11	behave	behave	VERB
ddj-47	920	12	like	like	ADP
ddj-47	920	13	two	two	NUM
ddj-47	920	14	eyeballs	eyeball	NOUN
ddj-47	920	15	gazing	gaze	VERB
ddj-47	920	16	each	each	DET
ddj-47	920	17	other	other	ADJ
ddj-47	920	18	as	as	SCONJ
ddj-47	920	19	proteins	protein	NOUN
ddj-47	920	20	move	move	VERB
ddj-47	920	21	with	with	ADP
ddj-47	920	22	respect	respect	NOUN
ddj-47	920	23	to	to	ADP
ddj-47	920	24	each	each	DET
ddj-47	920	25	other	other	ADJ
ddj-47	920	26	.	.	PUNCT
ddj-47	921	1	this	this	PRON
ddj-47	921	2	is	be	AUX
ddj-47	921	3	possible	possible	ADJ
ddj-47	921	4	if	if	SCONJ
ddj-47	921	5	binding	binding	ADJ
ddj-47	921	6	sites	site	NOUN
ddj-47	921	7	are	be	AUX
ddj-47	921	8	separated	separate	VERB
ddj-47	921	9	from	from	ADP
ddj-47	921	10	the	the	DET
ddj-47	921	11	rest	rest	NOUN
ddj-47	921	12	of	of	ADP
ddj-47	921	13	the	the	DET
ddj-47	921	14	protein	protein	NOUN
ddj-47	921	15	by	by	ADP
ddj-47	921	16	random	random	ADJ
ddj-47	921	17	pieces	piece	NOUN
ddj-47	921	18	of	of	ADP
ddj-47	921	19	chain	chain	NOUN
ddj-47	921	20	.	.	PUNCT
ddj-47	922	1	the	the	DET
ddj-47	922	2	analogy	analogy	NOUN
ddj-47	922	3	with	with	ADP
ddj-47	922	4	eye	eye	NOUN
ddj-47	922	5	might	might	AUX
ddj-47	922	6	be	be	AUX
ddj-47	922	7	actually	actually	ADV
ddj-47	922	8	deeper	deep	ADJ
ddj-47	922	9	:	:	PUNCT
ddj-47	922	10	i	i	PRON
ddj-47	922	11	have	have	AUX
ddj-47	922	12	proposed	propose	VERB
ddj-47	922	13	long	long	ADJ
ddj-47	922	14	time	time	NOUN
ddj-47	922	15	ago	ago	ADV
ddj-47	922	16	that	that	PRON
ddj-47	922	17	directed	direct	VERB
ddj-47	922	18	attention	attention	NOUN
ddj-47	922	19	in	in	ADP
ddj-47	922	20	vision	vision	NOUN
ddj-47	922	21	has	have	VERB
ddj-47	922	22	as	as	ADP
ddj-47	922	23	a	a	DET
ddj-47	922	24	space	space	NOUN
ddj-47	922	25	-	-	PUNCT
ddj-47	922	26	time	time	NOUN
ddj-47	922	27	correlate	correlate	ADJ
ddj-47	922	28	flux	flux	NOUN
ddj-47	922	29	tubes	tube	NOUN
ddj-47	922	30	of	of	ADP
ddj-47	922	31	topological	topological	ADJ
ddj-47	922	32	light	light	ADJ
ddj-47	922	33	rays	ray	NOUN
ddj-47	922	34	or	or	CCONJ
ddj-47	922	35	both	both	PRON
ddj-47	922	36	of	of	ADP
ddj-47	922	37	these	these	PRON
ddj-47	922	38	.	.	PUNCT
ddj-47	923	1	wormhole	wormhole	NOUN
ddj-47	923	2	magnetic	magnetic	ADJ
ddj-47	923	3	flux	flux	NOUN
ddj-47	923	4	tubes	tube	NOUN
ddj-47	923	5	might	might	AUX
ddj-47	923	6	indeed	indeed	ADV
ddj-47	923	7	connect	connect	VERB
ddj-47	923	8	perceiver	perceiver	NOUN
ddj-47	923	9	and	and	CCONJ
ddj-47	923	10	the	the	DET
ddj-47	923	11	object	object	NOUN
ddj-47	923	12	perceived	perceive	VERB
ddj-47	923	13	and	and	CCONJ
ddj-47	923	14	serve	serve	VERB
ddj-47	923	15	as	as	ADP
ddj-47	923	16	correlates	correlate	NOUN
ddj-47	923	17	of	of	ADP
ddj-47	923	18	attention	attention	NOUN
ddj-47	923	19	in	in	ADP
ddj-47	923	20	macroscopic	macroscopic	ADJ
ddj-47	923	21	length	length	NOUN
ddj-47	923	22	scales	scale	NOUN
ddj-47	923	23	.	.	PUNCT
ddj-47	924	1	7	7	X
ddj-47	924	2	.	.	X
ddj-47	924	3	also	also	ADV
ddj-47	924	4	the	the	DET
ddj-47	924	5	hydrogen	hydrogen	NOUN
ddj-47	924	6	bonds	bond	NOUN
ddj-47	924	7	between	between	ADP
ddj-47	924	8	residues	residue	NOUN
ddj-47	924	9	are	be	AUX
ddj-47	924	10	important	important	ADJ
ddj-47	924	11	for	for	SCONJ
ddj-47	924	12	the	the	DET
ddj-47	924	13	protein	protein	NOUN
ddj-47	924	14	folding	folding	NOUN
ddj-47	924	15	.	.	PUNCT
ddj-47	925	1	the	the	DET
ddj-47	925	2	donor	donor	NOUN
ddj-47	925	3	atoms	atom	NOUN
ddj-47	925	4	of	of	ADP
ddj-47	925	5	the	the	DET
ddj-47	925	6	residues	residue	NOUN
ddj-47	925	7	can	can	AUX
ddj-47	925	8	inherit	inherit	VERB
ddj-47	925	9	the	the	DET
ddj-47	925	10	conjugate	conjugate	NOUN
ddj-47	925	11	of	of	ADP
ddj-47	925	12	the	the	DET
ddj-47	925	13	color	color	NOUN
ddj-47	925	14	of	of	ADP
ddj-47	925	15	o	o	NOUN
ddj-47	925	16	=	=	PUNCT
ddj-47	925	17	and	and	CCONJ
ddj-47	925	18	acceptor	acceptor	NOUN
ddj-47	925	19	atoms	atom	NOUN
ddj-47	925	20	can	can	AUX
ddj-47	925	21	inherit	inherit	VERB
ddj-47	925	22	the	the	DET
ddj-47	925	23	color	color	NOUN
ddj-47	925	24	of	of	ADP
ddj-47	925	25	n	n	PRON
ddj-47	925	26	−h	−h	VERB
ddj-47	925	27	by	by	ADP
ddj-47	925	28	temporary	temporary	ADJ
ddj-47	925	29	reconnection	reconnection	NOUN
ddj-47	925	30	.	.	PUNCT
ddj-47	926	1	therefore	therefore	ADV
ddj-47	926	2	also	also	ADV
ddj-47	926	3	the	the	DET
ddj-47	926	4	hydrogen	hydrogen	NOUN
ddj-47	926	5	bonds	bond	NOUN
ddj-47	926	6	between	between	ADP
ddj-47	926	7	residues	residue	NOUN
ddj-47	926	8	of	of	ADP
ddj-47	926	9	hydrophilic	hydrophilic	ADJ
ddj-47	926	10	residues	residue	NOUN
ddj-47	926	11	containing	contain	VERB
ddj-47	926	12	both	both	CCONJ
ddj-47	926	13	donor	donor	NOUN
ddj-47	926	14	and	and	CCONJ
ddj-47	926	15	acceptor	acceptor	NOUN
ddj-47	926	16	atoms	atom	NOUN
ddj-47	926	17	would	would	AUX
ddj-47	926	18	be	be	AUX
ddj-47	926	19	restricted	restrict	VERB
ddj-47	926	20	by	by	ADP
ddj-47	926	21	the	the	DET
ddj-47	926	22	colors	color	NOUN
ddj-47	926	23	of	of	ADP
ddj-47	926	24	atoms	atom	NOUN
ddj-47	926	25	and	and	CCONJ
ddj-47	926	26	would	would	AUX
ddj-47	926	27	reflect	reflect	VERB
ddj-47	926	28	genetic	genetic	ADJ
ddj-47	926	29	code	code	NOUN
ddj-47	926	30	.	.	PUNCT
ddj-47	927	1	8	8	NUM
ddj-47	927	2	.	.	X
ddj-47	927	3	geometric	geometric	ADJ
ddj-47	927	4	and	and	CCONJ
ddj-47	927	5	physical	physical	ADJ
ddj-47	927	6	conjugation	conjugation	NOUN
ddj-47	927	7	(	(	PUNCT
ddj-47	927	8	acids	acid	NOUN
ddj-47	927	9	and	and	CCONJ
ddj-47	927	10	basics	basic	NOUN
ddj-47	927	11	combine	combine	VERB
ddj-47	927	12	in	in	ADP
ddj-47	927	13	the	the	DET
ddj-47	927	14	interface	interface	NOUN
ddj-47	927	15	)	)	PUNCT
ddj-47	927	16	means	mean	VERB
ddj-47	927	17	that	that	SCONJ
ddj-47	927	18	a	a	DET
ddj-47	927	19	virtual	virtual	ADJ
ddj-47	927	20	protein	protein	NOUN
ddj-47	927	21	a+b	a+b	NUM
ddj-47	927	22	is	be	AUX
ddj-47	927	23	cut	cut	VERB
ddj-47	927	24	to	to	ADP
ddj-47	927	25	pieces	piece	NOUN
ddj-47	927	26	along	along	ADP
ddj-47	927	27	the	the	DET
ddj-47	927	28	surface	surface	NOUN
ddj-47	927	29	in	in	ADP
ddj-47	927	30	the	the	DET
ddj-47	927	31	interior	interior	NOUN
ddj-47	927	32	defining	define	VERB
ddj-47	927	33	the	the	DET
ddj-47	927	34	interfaces	interface	NOUN
ddj-47	927	35	.	.	PUNCT
ddj-47	928	1	could	could	AUX
ddj-47	928	2	this	this	DET
ddj-47	928	3	chopping	chopping	NOUN
ddj-47	928	4	of	of	ADP
ddj-47	928	5	bigger	big	ADJ
ddj-47	928	6	proteins	protein	NOUN
ddj-47	928	7	to	to	ADP
ddj-47	928	8	smaller	small	ADJ
ddj-47	928	9	ones	one	NOUN
ddj-47	928	10	able	able	ADJ
ddj-47	928	11	to	to	PART
ddj-47	928	12	bind	bind	VERB
ddj-47	928	13	allow	allow	VERB
ddj-47	928	14	a	a	DET
ddj-47	928	15	realization	realization	NOUN
ddj-47	928	16	at	at	ADP
ddj-47	928	17	the	the	DET
ddj-47	928	18	level	level	NOUN
ddj-47	928	19	of	of	ADP
ddj-47	928	20	genome	genome	NOUN
ddj-47	928	21	in	in	ADP
ddj-47	928	22	the	the	DET
ddj-47	928	23	sense	sense	NOUN
ddj-47	928	24	that	that	SCONJ
ddj-47	928	25	glued	glue	VERB
ddj-47	928	26	portions	portion	NOUN
ddj-47	928	27	of	of	ADP
ddj-47	928	28	protein	protein	NOUN
ddj-47	928	29	would	would	AUX
ddj-47	928	30	originate	originate	VERB
ddj-47	928	31	from	from	ADP
ddj-47	928	32	same	same	ADJ
ddj-47	928	33	gene	gene	NOUN
ddj-47	928	34	or	or	CCONJ
ddj-47	928	35	its	its	PRON
ddj-47	928	36	reversed	reverse	VERB
ddj-47	928	37	version	version	NOUN
ddj-47	928	38	and	and	CCONJ
ddj-47	928	39	thus	thus	ADV
ddj-47	928	40	satisfy	satisfy	VERB
ddj-47	928	41	y	y	PROPN
ddj-47	928	42	=	=	SYM
ddj-47	928	43	zc	zc	PROPN
ddj-47	928	44	or	or	CCONJ
ddj-47	928	45	y	y	NOUN
ddj-47	928	46	=	=	SYM
ddj-47	928	47	z	z	NOUN
ddj-47	928	48	rule	rule	NOUN
ddj-47	928	49	approximately	approximately	ADV
ddj-47	928	50	?	?	PUNCT
ddj-47	929	1	could	could	AUX
ddj-47	929	2	also	also	ADV
ddj-47	929	3	protein	protein	NOUN
ddj-47	929	4	interior	interior	ADJ
ddj-47	929	5	involve	involve	VERB
ddj-47	929	6	pairings	pairing	NOUN
ddj-47	929	7	analogous	analogous	ADJ
ddj-47	929	8	to	to	ADP
ddj-47	929	9	catalyst	catalyst	NOUN
ddj-47	929	10	and	and	CCONJ
ddj-47	929	11	ligand	ligand	ADJ
ddj-47	929	12	pairings	pairing	NOUN
ddj-47	929	13	?	?	PUNCT
ddj-47	930	1	this	this	PRON
ddj-47	930	2	would	would	AUX
ddj-47	930	3	partially	partially	ADV
ddj-47	930	4	explain	explain	VERB
ddj-47	930	5	why	why	SCONJ
ddj-47	930	6	protein	protein	NOUN
ddj-47	930	7	folding	folding	NOUN
ddj-47	930	8	is	be	AUX
ddj-47	930	9	more	more	ADV
ddj-47	930	10	sensitive	sensitive	ADJ
ddj-47	930	11	to	to	ADP
ddj-47	930	12	the	the	DET
ddj-47	930	13	mutations	mutation	NOUN
ddj-47	930	14	in	in	ADP
ddj-47	930	15	the	the	DET
ddj-47	930	16	interior	interior	NOUN
ddj-47	930	17	of	of	ADP
ddj-47	930	18	protein	protein	NOUN
ddj-47	930	19	.	.	PUNCT
ddj-47	931	1	issn	issn	PROPN
ddj-47	931	2	:	:	PUNCT
ddj-47	931	3	2159	2159	NUM
ddj-47	931	4	-	-	SYM
ddj-47	931	5	0465	0465	NUM
ddj-47	931	6	dna	dna	PROPN
ddj-47	931	7	decipher	decipher	PROPN
ddj-47	931	8	journal	journal	PROPN
ddj-47	931	9	june	june	PROPN
ddj-47	931	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	931	11	published	publish	VERB
ddj-47	931	12	by	by	ADP
ddj-47	931	13	quantumdream	quantumdream	PROPN
ddj-47	931	14	,	,	PUNCT
ddj-47	931	15	inc	inc	PROPN
ddj-47	931	16	.	.	PROPN
ddj-47	931	17	dna	dna	PROPN
ddj-47	931	18	decipher	decipher	PROPN
ddj-47	931	19	journal	journal	NOUN
ddj-47	932	1	|	|	ADV
ddj-47	932	2	may	may	AUX
ddj-47	932	3	2013	2013	NUM
ddj-47	932	4	|	|	ADV
ddj-47	932	5	volume	volume	NOUN
ddj-47	932	6	3	3	NUM
ddj-47	932	7	|	|	NOUN
ddj-47	932	8	issue	issue	VERB
ddj-47	932	9	1	1	NUM
ddj-47	932	10	|	|	ADV
ddj-47	932	11	pp	pp	ADJ
ddj-47	932	12	.	.	PUNCT
ddj-47	933	1	58	58	NUM
ddj-47	933	2	-	-	SYM
ddj-47	933	3	88	88	NUM
ddj-47	933	4	85	85	NUM
ddj-47	933	5	pitkänen	pitkänen	NOUN
ddj-47	933	6	,	,	PUNCT
ddj-47	933	7	m.	m.	NOUN
ddj-47	933	8	,	,	PUNCT
ddj-47	933	9	a	a	DET
ddj-47	933	10	model	model	NOUN
ddj-47	933	11	for	for	ADP
ddj-47	933	12	protein	protein	NOUN
ddj-47	933	13	folding	folding	NOUN
ddj-47	933	14	and	and	CCONJ
ddj-47	933	15	biocatalysis	biocatalysis	NOUN
ddj-47	933	16	5	5	NUM
ddj-47	933	17	a	a	DET
ddj-47	933	18	model	model	NOUN
ddj-47	933	19	for	for	ADP
ddj-47	933	20	protein	protein	NOUN
ddj-47	933	21	folding	folding	NOUN
ddj-47	933	22	based	base	VERB
ddj-47	933	23	on	on	ADP
ddj-47	933	24	flux	flux	NOUN
ddj-47	933	25	tubes	tube	NOUN
ddj-47	933	26	connections	connection	NOUN
ddj-47	933	27	between	between	ADP
ddj-47	933	28	water	water	NOUN
ddj-47	933	29	molecules	molecule	NOUN
ddj-47	933	30	and	and	CCONJ
ddj-47	933	31	amino	amino	NOUN
ddj-47	933	32	-	-	PUNCT
ddj-47	933	33	acids	acids	NOUN
ddj-47	933	34	the	the	DET
ddj-47	933	35	overall	overall	ADJ
ddj-47	933	36	feelings	feeling	NOUN
ddj-47	933	37	about	about	ADP
ddj-47	933	38	the	the	DET
ddj-47	933	39	model	model	NOUN
ddj-47	933	40	just	just	ADV
ddj-47	933	41	discussed	discuss	VERB
ddj-47	933	42	are	be	AUX
ddj-47	933	43	somewhat	somewhat	ADV
ddj-47	933	44	mixed	mixed	ADJ
ddj-47	933	45	.	.	PUNCT
ddj-47	934	1	1	1	X
ddj-47	934	2	.	.	PUNCT
ddj-47	935	1	the	the	DET
ddj-47	935	2	ideas	idea	NOUN
ddj-47	935	3	about	about	ADP
ddj-47	935	4	flux	flux	NOUN
ddj-47	935	5	tube	tube	NOUN
ddj-47	935	6	as	as	ADP
ddj-47	935	7	a	a	DET
ddj-47	935	8	correlates	correlate	NOUN
ddj-47	935	9	for	for	ADP
ddj-47	935	10	a	a	DET
ddj-47	935	11	directed	direct	VERB
ddj-47	935	12	attention	attention	NOUN
ddj-47	935	13	and	and	CCONJ
ddj-47	935	14	about	about	ADP
ddj-47	935	15	the	the	DET
ddj-47	935	16	connection	connection	NOUN
ddj-47	935	17	between	between	ADP
ddj-47	935	18	hydrogen	hydrogen	NOUN
ddj-47	935	19	bond	bond	NOUN
ddj-47	935	20	formation	formation	NOUN
ddj-47	935	21	and	and	CCONJ
ddj-47	935	22	flux	flux	NOUN
ddj-47	935	23	tube	tube	NOUN
ddj-47	935	24	contraction	contraction	NOUN
ddj-47	935	25	involving	involve	VERB
ddj-47	935	26	change	change	NOUN
ddj-47	935	27	of	of	ADP
ddj-47	935	28	planck	planck	NOUN
ddj-47	935	29	constant	constant	ADJ
ddj-47	935	30	are	be	AUX
ddj-47	935	31	attractive	attractive	ADJ
ddj-47	935	32	.	.	PUNCT
ddj-47	936	1	it	it	PRON
ddj-47	936	2	would	would	AUX
ddj-47	936	3	be	be	AUX
ddj-47	936	4	nice	nice	ADJ
ddj-47	936	5	if	if	SCONJ
ddj-47	936	6	flux	flux	PROPN
ddj-47	936	7	tubes	tube	NOUN
ddj-47	936	8	between	between	ADP
ddj-47	936	9	amino	amino	NOUN
ddj-47	936	10	-	-	PUNCT
ddj-47	936	11	acids	acid	NOUN
ddj-47	936	12	could	could	AUX
ddj-47	936	13	force	force	VERB
ddj-47	936	14	the	the	DET
ddj-47	936	15	portions	portion	NOUN
ddj-47	936	16	of	of	ADP
ddj-47	936	17	amino	amino	NOUN
ddj-47	936	18	-	-	PUNCT
ddj-47	936	19	acid	acid	NOUN
ddj-47	936	20	sequences	sequence	NOUN
ddj-47	936	21	to	to	PART
ddj-47	936	22	form	form	VERB
ddj-47	936	23	representation	representation	NOUN
ddj-47	936	24	about	about	ADP
ddj-47	936	25	each	each	DET
ddj-47	936	26	other	other	ADJ
ddj-47	936	27	in	in	ADP
ddj-47	936	28	their	their	PRON
ddj-47	936	29	own	own	ADJ
ddj-47	936	30	geometry	geometry	NOUN
ddj-47	936	31	.	.	PUNCT
ddj-47	937	1	what	what	PRON
ddj-47	937	2	would	would	AUX
ddj-47	937	3	be	be	AUX
ddj-47	937	4	also	also	ADV
ddj-47	937	5	nice	nice	ADJ
ddj-47	937	6	that	that	SCONJ
ddj-47	937	7	the	the	DET
ddj-47	937	8	notions	notion	NOUN
ddj-47	937	9	of	of	ADP
ddj-47	937	10	finite	finite	ADJ
ddj-47	937	11	measurement	measurement	NOUN
ddj-47	937	12	resolution	resolution	NOUN
ddj-47	937	13	and	and	CCONJ
ddj-47	937	14	cognitive	cognitive	ADJ
ddj-47	937	15	resolution	resolution	NOUN
ddj-47	937	16	which	which	PRON
ddj-47	937	17	are	be	AUX
ddj-47	937	18	fundamental	fundamental	ADJ
ddj-47	937	19	notions	notion	NOUN
ddj-47	937	20	of	of	ADP
ddj-47	937	21	quantum	quantum	ADJ
ddj-47	937	22	tgd	tgd	PROPN
ddj-47	937	23	would	would	AUX
ddj-47	937	24	have	have	VERB
ddj-47	937	25	direct	direct	ADJ
ddj-47	937	26	correlates	correlate	NOUN
ddj-47	937	27	at	at	ADP
ddj-47	937	28	the	the	DET
ddj-47	937	29	level	level	NOUN
ddj-47	937	30	of	of	ADP
ddj-47	937	31	flux	flux	NOUN
ddj-47	937	32	tube	tube	NOUN
ddj-47	937	33	dynamics	dynamic	NOUN
ddj-47	937	34	.	.	PUNCT
ddj-47	938	1	2	2	X
ddj-47	938	2	.	.	X
ddj-47	938	3	the	the	DET
ddj-47	938	4	model	model	NOUN
ddj-47	938	5	for	for	ADP
ddj-47	938	6	protein	protein	NOUN
ddj-47	938	7	folding	folding	NOUN
ddj-47	938	8	involving	involve	VERB
ddj-47	938	9	only	only	ADV
ddj-47	938	10	flux	flux	NOUN
ddj-47	938	11	tube	tube	NOUN
ddj-47	938	12	connections	connection	NOUN
ddj-47	938	13	between	between	ADP
ddj-47	938	14	amino	amino	NOUN
ddj-47	938	15	-	-	PUNCT
ddj-47	938	16	acids	acid	NOUN
ddj-47	938	17	satisfying	satisfy	VERB
ddj-47	938	18	the	the	DET
ddj-47	938	19	proposed	propose	VERB
ddj-47	938	20	selection	selection	NOUN
ddj-47	938	21	rules	rule	NOUN
ddj-47	938	22	has	have	VERB
ddj-47	938	23	however	however	ADV
ddj-47	938	24	failures	failure	NOUN
ddj-47	938	25	.	.	PUNCT
ddj-47	939	1	this	this	PRON
ddj-47	939	2	could	could	AUX
ddj-47	939	3	be	be	AUX
ddj-47	939	4	due	due	ADJ
ddj-47	939	5	to	to	ADP
ddj-47	939	6	simple	simple	ADJ
ddj-47	939	7	fact	fact	NOUN
ddj-47	939	8	that	that	SCONJ
ddj-47	939	9	the	the	DET
ddj-47	939	10	proposed	propose	VERB
ddj-47	939	11	selection	selection	NOUN
ddj-47	939	12	rules	rule	NOUN
ddj-47	939	13	are	be	AUX
ddj-47	939	14	quite	quite	ADV
ddj-47	939	15	too	too	ADV
ddj-47	939	16	restrictive	restrictive	ADJ
ddj-47	939	17	.	.	PUNCT
ddj-47	940	1	also	also	ADV
ddj-47	940	2	the	the	DET
ddj-47	940	3	flux	flux	NOUN
ddj-47	940	4	tube	tube	NOUN
ddj-47	940	5	connections	connection	NOUN
ddj-47	940	6	between	between	ADP
ddj-47	940	7	amino	amino	NOUN
ddj-47	940	8	-	-	PUNCT
ddj-47	940	9	acids	acid	NOUN
ddj-47	940	10	and	and	CCONJ
ddj-47	940	11	water	water	NOUN
ddj-47	940	12	are	be	AUX
ddj-47	940	13	important	important	ADJ
ddj-47	940	14	and	and	CCONJ
ddj-47	940	15	might	might	AUX
ddj-47	940	16	even	even	ADV
ddj-47	940	17	determine	determine	VERB
ddj-47	940	18	the	the	DET
ddj-47	940	19	folding	fold	VERB
ddj-47	940	20	patters	patter	NOUN
ddj-47	940	21	to	to	ADP
ddj-47	940	22	a	a	DET
ddj-47	940	23	high	high	ADJ
ddj-47	940	24	degree	degree	NOUN
ddj-47	940	25	via	via	ADP
ddj-47	940	26	the	the	DET
ddj-47	940	27	induced	induced	ADJ
ddj-47	940	28	secondary	secondary	ADJ
ddj-47	940	29	interactions	interaction	NOUN
ddj-47	940	30	between	between	ADP
ddj-47	940	31	amino	amino	NOUN
ddj-47	940	32	-	-	PUNCT
ddj-47	940	33	acids	acid	NOUN
ddj-47	940	34	.	.	PUNCT
ddj-47	941	1	second	second	ADJ
ddj-47	941	2	model	model	NOUN
ddj-47	941	3	for	for	ADP
ddj-47	941	4	protein	protein	NOUN
ddj-47	941	5	folding	fold	VERB
ddj-47	941	6	to	to	PART
ddj-47	941	7	be	be	AUX
ddj-47	941	8	discussed	discuss	VERB
ddj-47	941	9	represents	represent	VERB
ddj-47	941	10	an	an	DET
ddj-47	941	11	extreme	extreme	NOUN
ddj-47	941	12	in	in	ADP
ddj-47	941	13	which	which	PRON
ddj-47	941	14	the	the	DET
ddj-47	941	15	flux	flux	NOUN
ddj-47	941	16	tube	tube	NOUN
ddj-47	941	17	connections	connection	NOUN
ddj-47	941	18	between	between	ADP
ddj-47	941	19	amino	amino	NOUN
ddj-47	941	20	-	-	PUNCT
ddj-47	941	21	acids	acid	NOUN
ddj-47	941	22	and	and	CCONJ
ddj-47	941	23	water	water	NOUN
ddj-47	941	24	molecules	molecule	NOUN
ddj-47	941	25	determined	determine	VERB
ddj-47	941	26	the	the	DET
ddj-47	941	27	dynamics	dynamic	NOUN
ddj-47	941	28	of	of	ADP
ddj-47	941	29	the	the	DET
ddj-47	941	30	folding	folding	NOUN
ddj-47	941	31	.	.	PUNCT
ddj-47	942	1	it	it	PRON
ddj-47	942	2	seems	seem	VERB
ddj-47	942	3	that	that	SCONJ
ddj-47	942	4	this	this	DET
ddj-47	942	5	model	model	NOUN
ddj-47	942	6	leads	lead	VERB
ddj-47	942	7	to	to	ADP
ddj-47	942	8	a	a	DET
ddj-47	942	9	realistic	realistic	ADJ
ddj-47	942	10	qualitative	qualitative	ADJ
ddj-47	942	11	picture	picture	NOUN
ddj-47	942	12	about	about	ADP
ddj-47	942	13	folding	fold	VERB
ddj-47	942	14	.	.	PUNCT
ddj-47	943	1	also	also	ADV
ddj-47	943	2	quantitative	quantitative	ADJ
ddj-47	943	3	model	model	NOUN
ddj-47	943	4	can	can	AUX
ddj-47	943	5	be	be	AUX
ddj-47	943	6	constructed	construct	VERB
ddj-47	943	7	as	as	ADP
ddj-47	943	8	a	a	DET
ddj-47	943	9	straightforward	straightforward	ADJ
ddj-47	943	10	generalization	generalization	NOUN
ddj-47	943	11	of	of	ADP
ddj-47	943	12	the	the	DET
ddj-47	943	13	model	model	NOUN
ddj-47	943	14	involving	involve	VERB
ddj-47	943	15	only	only	ADV
ddj-47	943	16	the	the	DET
ddj-47	943	17	flux	flux	NOUN
ddj-47	943	18	tube	tube	NOUN
ddj-47	943	19	connections	connection	NOUN
ddj-47	943	20	between	between	ADP
ddj-47	943	21	selected	select	VERB
ddj-47	943	22	amino	amino	NOUN
ddj-47	943	23	-	-	PUNCT
ddj-47	943	24	acids	acid	NOUN
ddj-47	943	25	.	.	PUNCT
ddj-47	944	1	5.1	5.1	NUM
ddj-47	944	2	could	could	AUX
ddj-47	944	3	there	there	PRON
ddj-47	944	4	be	be	AUX
ddj-47	944	5	new	new	ADJ
ddj-47	944	6	physics	physics	NOUN
ddj-47	944	7	behind	behind	ADP
ddj-47	944	8	hydrophily	hydrophily	NOUN
ddj-47	944	9	and	and	CCONJ
ddj-47	944	10	hydrophoby	hydrophoby	NOUN
ddj-47	944	11	?	?	PUNCT
ddj-47	945	1	one	one	PRON
ddj-47	945	2	could	could	AUX
ddj-47	945	3	accept	accept	VERB
ddj-47	945	4	just	just	ADV
ddj-47	945	5	as	as	ADP
ddj-47	945	6	a	a	DET
ddj-47	945	7	fact	fact	NOUN
ddj-47	945	8	that	that	SCONJ
ddj-47	945	9	magnetic	magnetic	ADJ
ddj-47	945	10	flux	flux	NOUN
ddj-47	945	11	tubes	tube	NOUN
ddj-47	945	12	to	to	ADP
ddj-47	945	13	the	the	DET
ddj-47	945	14	magnetic	magnetic	ADJ
ddj-47	945	15	body	body	NOUN
ddj-47	945	16	of	of	ADP
ddj-47	945	17	water	water	NOUN
ddj-47	945	18	mediate	mediate	VERB
ddj-47	945	19	an	an	DET
ddj-47	945	20	interaction	interaction	NOUN
ddj-47	945	21	which	which	PRON
ddj-47	945	22	is	be	AUX
ddj-47	945	23	attractive	attractive	ADJ
ddj-47	945	24	or	or	CCONJ
ddj-47	945	25	repulsive	repulsive	ADJ
ddj-47	945	26	between	between	ADP
ddj-47	945	27	water	water	NOUN
ddj-47	945	28	molecules	molecule	NOUN
ddj-47	945	29	and	and	CCONJ
ddj-47	945	30	amino	amino	NOUN
ddj-47	945	31	-	-	PUNCT
ddj-47	945	32	acids	acid	NOUN
ddj-47	945	33	and	and	CCONJ
ddj-47	945	34	attractive	attractive	ADJ
ddj-47	945	35	between	between	ADP
ddj-47	945	36	dna	dna	PROPN
ddj-47	945	37	molecules	molecule	NOUN
ddj-47	945	38	and	and	CCONJ
ddj-47	945	39	water	water	NOUN
ddj-47	945	40	.	.	PUNCT
ddj-47	946	1	accepting	accept	VERB
ddj-47	946	2	that	that	SCONJ
ddj-47	946	3	this	this	PRON
ddj-47	946	4	induces	induce	VERB
ddj-47	946	5	interaction	interaction	NOUN
ddj-47	946	6	between	between	ADP
ddj-47	946	7	amino	amino	NOUN
ddj-47	946	8	-	-	PUNCT
ddj-47	946	9	acids	acids	NOUN
ddj-47	946	10	one	one	PRON
ddj-47	946	11	could	could	AUX
ddj-47	946	12	proceed	proceed	VERB
ddj-47	946	13	to	to	ADP
ddj-47	946	14	model	model	NOUN
ddj-47	946	15	building	building	NOUN
ddj-47	946	16	without	without	ADP
ddj-47	946	17	any	any	DET
ddj-47	946	18	mention	mention	NOUN
ddj-47	946	19	about	about	ADP
ddj-47	946	20	tgd	tgd	PROPN
ddj-47	946	21	.	.	PUNCT
ddj-47	947	1	one	one	PRON
ddj-47	947	2	could	could	AUX
ddj-47	947	3	also	also	ADV
ddj-47	947	4	try	try	VERB
ddj-47	947	5	to	to	PART
ddj-47	947	6	dig	dig	VERB
ddj-47	947	7	deeper	deeply	ADV
ddj-47	947	8	and	and	CCONJ
ddj-47	947	9	ask	ask	VERB
ddj-47	947	10	what	what	PRON
ddj-47	947	11	might	might	AUX
ddj-47	947	12	be	be	AUX
ddj-47	947	13	the	the	DET
ddj-47	947	14	origin	origin	NOUN
ddj-47	947	15	of	of	ADP
ddj-47	947	16	this	this	DET
ddj-47	947	17	interaction	interaction	NOUN
ddj-47	947	18	.	.	PUNCT
ddj-47	948	1	1	1	X
ddj-47	948	2	.	.	X
ddj-47	948	3	option	option	NOUN
ddj-47	949	1	i	i	PRON
ddj-47	949	2	:	:	PUNCT
ddj-47	949	3	could	could	AUX
ddj-47	949	4	one	one	PRON
ddj-47	949	5	understand	understand	VERB
ddj-47	949	6	the	the	DET
ddj-47	949	7	interaction	interaction	NOUN
ddj-47	949	8	in	in	ADP
ddj-47	949	9	terms	term	NOUN
ddj-47	949	10	of	of	ADP
ddj-47	949	11	phase	phase	NOUN
ddj-47	949	12	transitions	transition	NOUN
ddj-47	949	13	changing	change	VERB
ddj-47	949	14	the	the	DET
ddj-47	949	15	planck	planck	NOUN
ddj-47	949	16	constant	constant	ADJ
ddj-47	949	17	of	of	ADP
ddj-47	949	18	the	the	DET
ddj-47	949	19	magnetic	magnetic	ADJ
ddj-47	949	20	flux	flux	PROPN
ddj-47	949	21	tube	tube	PROPN
ddj-47	949	22	.	.	PUNCT
ddj-47	950	1	the	the	DET
ddj-47	950	2	interaction	interaction	NOUN
ddj-47	950	3	would	would	AUX
ddj-47	950	4	be	be	AUX
ddj-47	950	5	repulsive	repulsive	ADJ
ddj-47	950	6	(	(	PUNCT
ddj-47	950	7	attractive	attractive	ADJ
ddj-47	950	8	)	)	PUNCT
ddj-47	950	9	would	would	AUX
ddj-47	950	10	result	result	VERB
ddj-47	950	11	if	if	SCONJ
ddj-47	950	12	the	the	DET
ddj-47	950	13	interaction	interaction	NOUN
ddj-47	950	14	energy	energy	NOUN
ddj-47	950	15	increases	increase	NOUN
ddj-47	950	16	(	(	PUNCT
ddj-47	950	17	decreases	decrease	NOUN
ddj-47	950	18	)	)	PUNCT
ddj-47	950	19	when	when	SCONJ
ddj-47	950	20	planck	planck	NOUN
ddj-47	950	21	constant	constant	ADJ
ddj-47	950	22	is	be	AUX
ddj-47	950	23	reduced	reduce	VERB
ddj-47	950	24	.	.	PUNCT
ddj-47	951	1	magnetic	magnetic	ADJ
ddj-47	951	2	interaction	interaction	NOUN
ddj-47	951	3	energy	energy	NOUN
ddj-47	951	4	is	be	AUX
ddj-47	951	5	certainly	certainly	ADV
ddj-47	951	6	the	the	DET
ddj-47	951	7	best	good	ADJ
ddj-47	951	8	candidate	candidate	NOUN
ddj-47	951	9	and	and	CCONJ
ddj-47	951	10	could	could	AUX
ddj-47	951	11	also	also	ADV
ddj-47	951	12	imply	imply	VERB
ddj-47	951	13	the	the	DET
ddj-47	951	14	equivalence	equivalence	NOUN
ddj-47	951	15	of	of	ADP
ddj-47	951	16	the	the	DET
ddj-47	951	17	divisor	divisor	NOUN
ddj-47	951	18	code	code	NOUN
ddj-47	951	19	and	and	CCONJ
ddj-47	951	20	dark	dark	ADJ
ddj-47	951	21	baryon	baryon	NOUN
ddj-47	951	22	code	code	NOUN
ddj-47	951	23	.	.	PUNCT
ddj-47	952	1	2	2	X
ddj-47	952	2	.	.	X
ddj-47	952	3	option	option	PROPN
ddj-47	952	4	ii	ii	PROPN
ddj-47	952	5	:	:	PUNCT
ddj-47	952	6	could	could	AUX
ddj-47	952	7	hydrophily	hydrophily	PROPN
ddj-47	952	8	and	and	CCONJ
ddj-47	952	9	hydrophoby	hydrophoby	NOUN
ddj-47	952	10	be	be	AUX
ddj-47	952	11	described	describe	VERB
ddj-47	952	12	in	in	ADP
ddj-47	952	13	terms	term	NOUN
ddj-47	952	14	of	of	ADP
ddj-47	952	15	em	em	PRON
ddj-47	952	16	interactions	interaction	NOUN
ddj-47	952	17	of	of	ADP
ddj-47	952	18	quarks	quark	NOUN
ddj-47	952	19	representing	represent	VERB
ddj-47	952	20	nucleotides	nucleotide	NOUN
ddj-47	952	21	in	in	ADP
ddj-47	952	22	the	the	DET
ddj-47	952	23	model	model	NOUN
ddj-47	952	24	of	of	ADP
ddj-47	952	25	dna	dna	PROPN
ddj-47	952	26	as	as	ADP
ddj-47	952	27	tqc	tqc	ADJ
ddj-47	952	28	.	.	PUNCT
ddj-47	953	1	for	for	ADP
ddj-47	953	2	instance	instance	NOUN
ddj-47	953	3	,	,	PUNCT
ddj-47	953	4	could	could	AUX
ddj-47	953	5	amino	amino	NOUN
ddj-47	953	6	-	-	PUNCT
ddj-47	953	7	acids	acid	NOUN
ddj-47	953	8	and	and	CCONJ
ddj-47	953	9	water	water	NOUN
ddj-47	953	10	molecules	molecule	NOUN
ddj-47	953	11	be	be	AUX
ddj-47	953	12	characterized	characterize	VERB
ddj-47	953	13	by	by	ADP
ddj-47	953	14	charges	charge	NOUN
ddj-47	953	15	which	which	PRON
ddj-47	953	16	are	be	AUX
ddj-47	953	17	of	of	ADP
ddj-47	953	18	opposite	opposite	ADJ
ddj-47	953	19	sign	sign	NOUN
ddj-47	953	20	for	for	ADP
ddj-47	953	21	water	water	NOUN
ddj-47	953	22	molecules	molecule	NOUN
ddj-47	953	23	and	and	CCONJ
ddj-47	953	24	hydrophilic	hydrophilic	ADJ
ddj-47	953	25	molecules	molecule	NOUN
ddj-47	953	26	and	and	CCONJ
ddj-47	953	27	of	of	ADP
ddj-47	953	28	same	same	ADJ
ddj-47	953	29	sign	sign	NOUN
ddj-47	953	30	for	for	ADP
ddj-47	953	31	water	water	NOUN
ddj-47	953	32	molecules	molecule	NOUN
ddj-47	953	33	and	and	CCONJ
ddj-47	953	34	hydrophobic	hydrophobic	NOUN
ddj-47	953	35	molecules	molecule	NOUN
ddj-47	953	36	.	.	PUNCT
ddj-47	954	1	for	for	ADP
ddj-47	954	2	option	option	NOUN
ddj-47	954	3	i	i	PRON
ddj-47	954	4	,	,	PUNCT
ddj-47	954	5	which	which	PRON
ddj-47	954	6	represents	represent	VERB
ddj-47	954	7	completely	completely	ADV
ddj-47	954	8	new	new	ADJ
ddj-47	954	9	physics	physics	NOUN
ddj-47	954	10	(	(	PUNCT
ddj-47	954	11	using	use	VERB
ddj-47	954	12	the	the	DET
ddj-47	954	13	standards	standard	NOUN
ddj-47	954	14	of	of	ADP
ddj-47	954	15	tgd	tgd	PROPN
ddj-47	954	16	!	!	PROPN
ddj-47	954	17	)	)	PUNCT
ddj-47	954	18	,	,	PUNCT
ddj-47	954	19	the	the	DET
ddj-47	954	20	situation	situation	NOUN
ddj-47	954	21	looks	look	VERB
ddj-47	954	22	promising	promise	VERB
ddj-47	954	23	.	.	PUNCT
ddj-47	955	1	the	the	DET
ddj-47	955	2	magnetic	magnetic	ADJ
ddj-47	955	3	interaction	interaction	NOUN
ddj-47	955	4	energy	energy	NOUN
ddj-47	955	5	assignable	assignable	ADJ
ddj-47	955	6	to	to	ADP
ddj-47	955	7	the	the	DET
ddj-47	955	8	flux	flux	NOUN
ddj-47	955	9	tube	tube	NOUN
ddj-47	955	10	is	be	AUX
ddj-47	955	11	a	a	DET
ddj-47	955	12	function	function	NOUN
ddj-47	955	13	of	of	ADP
ddj-47	955	14	the	the	DET
ddj-47	955	15	integers	integer	NOUN
ddj-47	955	16	(	(	PUNCT
ddj-47	955	17	na	na	NOUN
ddj-47	955	18	,	,	PUNCT
ddj-47	955	19	nb	nb	NOUN
ddj-47	955	20	)	)	PUNCT
ddj-47	955	21	characterizing	characterize	VERB
ddj-47	955	22	the	the	DET
ddj-47	955	23	corresponding	correspond	VERB
ddj-47	955	24	page	page	NOUN
ddj-47	955	25	of	of	ADP
ddj-47	955	26	the	the	DET
ddj-47	955	27	book	book	NOUN
ddj-47	955	28	like	like	ADP
ddj-47	955	29	structure	structure	NOUN
ddj-47	955	30	associated	associate	VERB
ddj-47	955	31	with	with	ADP
ddj-47	955	32	generalized	generalized	ADJ
ddj-47	955	33	imbedding	imbed	VERB
ddj-47	955	34	space	space	NOUN
ddj-47	955	35	in	in	ADP
ddj-47	955	36	particular	particular	ADJ
ddj-47	955	37	of	of	ADP
ddj-47	955	38	the	the	DET
ddj-47	955	39	planck	planck	NOUN
ddj-47	955	40	constant	constant	ADJ
ddj-47	955	41	of	of	ADP
ddj-47	955	42	the	the	DET
ddj-47	955	43	flux	flux	NOUN
ddj-47	955	44	tube	tube	NOUN
ddj-47	955	45	and	and	CCONJ
ddj-47	955	46	the	the	DET
ddj-47	955	47	minimization	minimization	NOUN
ddj-47	955	48	is	be	AUX
ddj-47	955	49	performed	perform	VERB
ddj-47	955	50	by	by	ADP
ddj-47	955	51	keeping	keep	VERB
ddj-47	955	52	the	the	DET
ddj-47	955	53	charges	charge	NOUN
ddj-47	955	54	of	of	ADP
ddj-47	955	55	the	the	DET
ddj-47	955	56	quarks	quarks	NOUN
ddj-47	955	57	possibly	possibly	ADV
ddj-47	955	58	at	at	ADP
ddj-47	955	59	its	its	PRON
ddj-47	955	60	ends	end	NOUN
ddj-47	955	61	fixed	fix	VERB
ddj-47	955	62	.	.	PUNCT
ddj-47	956	1	this	this	DET
ddj-47	956	2	new	new	ADJ
ddj-47	956	3	physics	physics	NOUN
ddj-47	956	4	fits	fit	VERB
ddj-47	956	5	also	also	ADV
ddj-47	956	6	nicely	nicely	ADV
ddj-47	956	7	with	with	ADP
ddj-47	956	8	the	the	DET
ddj-47	956	9	idea	idea	NOUN
ddj-47	956	10	that	that	SCONJ
ddj-47	956	11	magnetic	magnetic	ADJ
ddj-47	956	12	body	body	NOUN
ddj-47	956	13	controls	control	VERB
ddj-47	956	14	the	the	DET
ddj-47	956	15	living	live	VERB
ddj-47	956	16	matter	matter	NOUN
ddj-47	956	17	by	by	ADP
ddj-47	956	18	utilizing	utilize	VERB
ddj-47	956	19	phase	phase	NOUN
ddj-47	956	20	transitions	transition	NOUN
ddj-47	956	21	changing	change	VERB
ddj-47	956	22	planck	planck	NOUN
ddj-47	956	23	constant	constant	ADJ
ddj-47	956	24	.	.	PUNCT
ddj-47	957	1	what	what	PRON
ddj-47	957	2	comes	come	VERB
ddj-47	957	3	in	in	ADP
ddj-47	957	4	mind	mind	NOUN
ddj-47	957	5	in	in	ADP
ddj-47	957	6	the	the	DET
ddj-47	957	7	case	case	NOUN
ddj-47	957	8	of	of	ADP
ddj-47	957	9	option	option	NOUN
ddj-47	957	10	ii	ii	NOUN
ddj-47	957	11	is	be	AUX
ddj-47	957	12	that	that	SCONJ
ddj-47	957	13	the	the	DET
ddj-47	957	14	ends	end	NOUN
ddj-47	957	15	of	of	ADP
ddj-47	957	16	the	the	DET
ddj-47	957	17	flux	flux	NOUN
ddj-47	957	18	tube	tube	NOUN
ddj-47	957	19	carry	carry	VERB
ddj-47	957	20	opposite	opposite	ADJ
ddj-47	957	21	charges	charge	NOUN
ddj-47	957	22	correlating	correlate	VERB
ddj-47	957	23	with	with	ADP
ddj-47	957	24	the	the	DET
ddj-47	957	25	codon	codon	NOUN
ddj-47	957	26	coding	coding	NOUN
ddj-47	957	27	for	for	ADP
ddj-47	957	28	the	the	DET
ddj-47	957	29	amino	amino	NOUN
ddj-47	957	30	-	-	PUNCT
ddj-47	957	31	acid	acid	NOUN
ddj-47	957	32	and	and	CCONJ
ddj-47	957	33	giving	give	VERB
ddj-47	957	34	rise	rise	NOUN
ddj-47	957	35	to	to	ADP
ddj-47	957	36	ordinary	ordinary	ADJ
ddj-47	957	37	gauge	gauge	ADJ
ddj-47	957	38	interactions	interaction	NOUN
ddj-47	957	39	.	.	PUNCT
ddj-47	958	1	unfortunately	unfortunately	ADV
ddj-47	958	2	this	this	DET
ddj-47	958	3	scenario	scenario	NOUN
ddj-47	958	4	does	do	AUX
ddj-47	958	5	not	not	PART
ddj-47	958	6	seem	seem	VERB
ddj-47	958	7	to	to	PART
ddj-47	958	8	work	work	VERB
ddj-47	958	9	.	.	PUNCT
ddj-47	959	1	1	1	X
ddj-47	959	2	.	.	X
ddj-47	959	3	it	it	PRON
ddj-47	959	4	was	be	AUX
ddj-47	959	5	already	already	ADV
ddj-47	959	6	found	find	VERB
ddj-47	959	7	that	that	SCONJ
ddj-47	959	8	(	(	PUNCT
ddj-47	959	9	denoting	denote	VERB
ddj-47	959	10	codons	codon	NOUN
ddj-47	959	11	by	by	ADP
ddj-47	959	12	xy	xy	PROPN
ddj-47	959	13	z	z	NOUN
ddj-47	959	14	)	)	PUNCT
ddj-47	959	15	only	only	ADV
ddj-47	959	16	y	y	PROPN
ddj-47	959	17	=	=	PUNCT
ddj-47	959	18	a	a	PROPN
ddj-47	959	19	,	,	PUNCT
ddj-47	959	20	g	g	PROPN
ddj-47	959	21	type	type	NOUN
ddj-47	959	22	amino	amino	NOUN
ddj-47	959	23	-	-	PUNCT
ddj-47	959	24	acid	acid	NOUN
ddj-47	959	25	residue	residue	NOUN
ddj-47	959	26	can	can	AUX
ddj-47	959	27	form	form	VERB
ddj-47	959	28	hydrogen	hydrogen	NOUN
ddj-47	959	29	bonds	bond	NOUN
ddj-47	959	30	and	and	CCONJ
ddj-47	959	31	is	be	AUX
ddj-47	959	32	hydrophilic	hydrophilic	ADJ
ddj-47	959	33	and	and	CCONJ
ddj-47	959	34	thus	thus	ADV
ddj-47	959	35	interacts	interact	VERB
ddj-47	959	36	strongly	strongly	ADV
ddj-47	959	37	with	with	ADP
ddj-47	959	38	water	water	NOUN
ddj-47	959	39	and	and	CCONJ
ddj-47	959	40	dna	dna	NOUN
ddj-47	959	41	and	and	CCONJ
ddj-47	959	42	rna	rna	PROPN
ddj-47	959	43	.	.	PUNCT
ddj-47	960	1	if	if	SCONJ
ddj-47	960	2	water	water	NOUN
ddj-47	960	3	end	end	NOUN
ddj-47	960	4	of	of	ADP
ddj-47	960	5	flux	flux	NOUN
ddj-47	960	6	tube	tube	NOUN
ddj-47	960	7	corresponds	correspond	VERB
ddj-47	960	8	to	to	ADP
ddj-47	960	9	anti	anti	ADJ
ddj-47	960	10	-	-	NOUN
ddj-47	960	11	quarks	quarks	ADJ
ddj-47	960	12	the	the	DET
ddj-47	960	13	attractive	attractive	ADJ
ddj-47	960	14	interaction	interaction	NOUN
ddj-47	960	15	between	between	ADP
ddj-47	960	16	quark	quark	PROPN
ddj-47	960	17	and	and	CCONJ
ddj-47	960	18	anti	anti	ADJ
ddj-47	960	19	-	-	ADJ
ddj-47	960	20	quark	quark	NOUN
ddj-47	960	21	at	at	ADP
ddj-47	960	22	the	the	DET
ddj-47	960	23	ends	end	NOUN
ddj-47	960	24	of	of	ADP
ddj-47	960	25	flux	flux	NOUN
ddj-47	960	26	tube	tube	NOUN
ddj-47	960	27	could	could	AUX
ddj-47	960	28	relate	relate	VERB
ddj-47	960	29	to	to	ADP
ddj-47	960	30	hydrophily	hydrophily	NOUN
ddj-47	960	31	.	.	PUNCT
ddj-47	961	1	for	for	ADP
ddj-47	961	2	hydrophobic	hydrophobic	NOUN
ddj-47	961	3	amino	amino	NOUN
ddj-47	961	4	-	-	PUNCT
ddj-47	961	5	acids	acids	NOUN
ddj-47	961	6	one	one	PRON
ddj-47	961	7	would	would	AUX
ddj-47	961	8	have	have	VERB
ddj-47	961	9	interaction	interaction	NOUN
ddj-47	961	10	between	between	ADP
ddj-47	961	11	identical	identical	ADJ
ddj-47	961	12	quarks	quarks	NOUN
ddj-47	961	13	and	and	CCONJ
ddj-47	961	14	already	already	ADV
ddj-47	961	15	fermi	fermi	NOUN
ddj-47	961	16	statistics	statistic	NOUN
ddj-47	961	17	would	would	AUX
ddj-47	961	18	cause	cause	VERB
ddj-47	961	19	repulsion	repulsion	NOUN
ddj-47	961	20	.	.	PUNCT
ddj-47	962	1	in	in	ADP
ddj-47	962	2	dna	dna	PROPN
ddj-47	962	3	as	as	ADP
ddj-47	962	4	tqc	tqc	PROPN
ddj-47	962	5	model	model	NOUN
ddj-47	962	6	based	base	VERB
ddj-47	962	7	on	on	ADP
ddj-47	962	8	the	the	DET
ddj-47	962	9	coding	coding	NOUN
ddj-47	962	10	of	of	ADP
ddj-47	962	11	a	a	DET
ddj-47	962	12	,	,	PUNCT
ddj-47	962	13	g	g	PROPN
ddj-47	962	14	and	and	CCONJ
ddj-47	962	15	t	t	PROPN
ddj-47	962	16	,	,	PUNCT
ddj-47	962	17	c	c	NOUN
ddj-47	962	18	in	in	ADP
ddj-47	962	19	terms	term	NOUN
ddj-47	962	20	of	of	ADP
ddj-47	962	21	quarks	quarks	PROPN
ddj-47	962	22	u	u	PROPN
ddj-47	962	23	,	,	PUNCT
ddj-47	962	24	d	d	PROPN
ddj-47	962	25	and	and	CCONJ
ddj-47	962	26	their	their	PRON
ddj-47	962	27	anti	anti	ADJ
ddj-47	962	28	-	-	ADJ
ddj-47	962	29	quarks	quarks	ADJ
ddj-47	962	30	hydrophily	hydrophily	ADJ
ddj-47	962	31	-	-	PUNCT
ddj-47	962	32	hydrophoby	hydrophoby	NOUN
ddj-47	962	33	dichotomy	dichotomy	NOUN
ddj-47	962	34	corresponds	correspond	VERB
ddj-47	962	35	to	to	ADP
ddj-47	962	36	matter	matter	NOUN
ddj-47	962	37	-	-	PUNCT
ddj-47	962	38	antimatter	antimatter	NOUN
ddj-47	962	39	dichotomy	dichotomy	NOUN
ddj-47	962	40	for	for	ADP
ddj-47	962	41	quark	quark	NOUN
ddj-47	962	42	assigned	assign	VERB
ddj-47	962	43	to	to	ADP
ddj-47	962	44	the	the	DET
ddj-47	962	45	ends	end	NOUN
ddj-47	962	46	of	of	ADP
ddj-47	962	47	the	the	DET
ddj-47	962	48	flux	flux	NOUN
ddj-47	962	49	tube	tube	NOUN
ddj-47	962	50	.	.	PUNCT
ddj-47	963	1	quarks	quarks	PROPN
ddj-47	963	2	and	and	CCONJ
ddj-47	963	3	anti	anti	ADJ
ddj-47	963	4	-	-	ADJ
ddj-47	963	5	quark	quark	NOUN
ddj-47	963	6	have	have	VERB
ddj-47	963	7	opposite	opposite	ADJ
ddj-47	963	8	charges	charge	NOUN
ddj-47	963	9	.	.	PUNCT
ddj-47	964	1	hence	hence	ADV
ddj-47	964	2	the	the	DET
ddj-47	964	3	flux	flux	NOUN
ddj-47	964	4	tube	tube	NOUN
ddj-47	964	5	ends	end	NOUN
ddj-47	964	6	of	of	ADP
ddj-47	964	7	hydrophilic	hydrophilic	ADJ
ddj-47	964	8	amino	amino	NOUN
ddj-47	964	9	-	-	PUNCT
ddj-47	964	10	acids	acid	NOUN
ddj-47	964	11	could	could	AUX
ddj-47	964	12	correspond	correspond	VERB
ddj-47	964	13	issn	issn	NOUN
ddj-47	964	14	:	:	PUNCT
ddj-47	964	15	2159	2159	NUM
ddj-47	964	16	-	-	SYM
ddj-47	964	17	0465	0465	NUM
ddj-47	964	18	dna	dna	PROPN
ddj-47	964	19	decipher	decipher	PROPN
ddj-47	964	20	journal	journal	PROPN
ddj-47	964	21	june	june	PROPN
ddj-47	964	22	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	964	23	published	publish	VERB
ddj-47	964	24	by	by	ADP
ddj-47	964	25	quantumdream	quantumdream	PROPN
ddj-47	964	26	,	,	PUNCT
ddj-47	964	27	inc	inc	PROPN
ddj-47	964	28	.	.	PROPN
ddj-47	964	29	dna	dna	PROPN
ddj-47	964	30	decipher	decipher	PROPN
ddj-47	964	31	journal	journal	NOUN
ddj-47	965	1	|	|	ADV
ddj-47	965	2	may	may	AUX
ddj-47	965	3	2013	2013	NUM
ddj-47	965	4	|	|	ADV
ddj-47	965	5	volume	volume	NOUN
ddj-47	965	6	3	3	NUM
ddj-47	965	7	|	|	NOUN
ddj-47	965	8	issue	issue	VERB
ddj-47	965	9	1	1	NUM
ddj-47	965	10	|	|	ADV
ddj-47	965	11	pp	pp	ADJ
ddj-47	965	12	.	.	PUNCT
ddj-47	966	1	58	58	NUM
ddj-47	966	2	-	-	SYM
ddj-47	966	3	88	88	NUM
ddj-47	966	4	86	86	NUM
ddj-47	966	5	pitkänen	pitkänen	NOUN
ddj-47	966	6	,	,	PUNCT
ddj-47	966	7	m.	m.	NOUN
ddj-47	966	8	,	,	PUNCT
ddj-47	966	9	a	a	DET
ddj-47	966	10	model	model	NOUN
ddj-47	966	11	for	for	ADP
ddj-47	966	12	protein	protein	NOUN
ddj-47	966	13	folding	folding	NOUN
ddj-47	966	14	and	and	CCONJ
ddj-47	966	15	biocatalysis	biocatalysis	NOUN
ddj-47	966	16	to	to	ADP
ddj-47	966	17	quarks	quarks	PROPN
ddj-47	966	18	and	and	CCONJ
ddj-47	966	19	water	water	NOUN
ddj-47	966	20	and	and	CCONJ
ddj-47	966	21	hydrophobic	hydrophobic	NOUN
ddj-47	966	22	ends	end	NOUN
ddj-47	966	23	of	of	ADP
ddj-47	966	24	flux	flux	PROPN
ddj-47	966	25	tubes	tube	NOUN
ddj-47	966	26	to	to	ADP
ddj-47	966	27	anti	anti	NOUN
ddj-47	966	28	-	-	NOUN
ddj-47	966	29	quarks	quark	NOUN
ddj-47	966	30	.	.	PUNCT
ddj-47	967	1	therefore	therefore	ADV
ddj-47	967	2	the	the	DET
ddj-47	967	3	dna	dna	PROPN
ddj-47	967	4	as	as	ADP
ddj-47	967	5	tqc	tqc	PROPN
ddj-47	967	6	model	model	NOUN
ddj-47	967	7	would	would	AUX
ddj-47	967	8	predict	predict	VERB
ddj-47	967	9	the	the	DET
ddj-47	967	10	needed	need	VERB
ddj-47	967	11	behavior	behavior	NOUN
ddj-47	967	12	of	of	ADP
ddj-47	967	13	the	the	DET
ddj-47	967	14	forces	force	NOUN
ddj-47	967	15	.	.	PUNCT
ddj-47	968	1	in	in	ADP
ddj-47	968	2	the	the	DET
ddj-47	968	3	case	case	NOUN
ddj-47	968	4	of	of	ADP
ddj-47	968	5	gly	gly	ADV
ddj-47	968	6	containing	contain	VERB
ddj-47	968	7	only	only	ADV
ddj-47	968	8	hydrogen	hydrogen	NOUN
ddj-47	968	9	as	as	ADP
ddj-47	968	10	residue	residue	NOUN
ddj-47	968	11	the	the	DET
ddj-47	968	12	flux	flux	NOUN
ddj-47	968	13	tube	tube	NOUN
ddj-47	968	14	might	might	AUX
ddj-47	968	15	be	be	AUX
ddj-47	968	16	simply	simply	ADV
ddj-47	968	17	absent	absent	ADJ
ddj-47	968	18	.	.	PUNCT
ddj-47	969	1	2	2	X
ddj-47	969	2	.	.	X
ddj-47	969	3	dna	dna	PROPN
ddj-47	969	4	codons	codon	NOUN
ddj-47	969	5	a	a	DET
ddj-47	969	6	,	,	PUNCT
ddj-47	969	7	t	t	PROPN
ddj-47	969	8	,	,	PUNCT
ddj-47	969	9	c	c	PROPN
ddj-47	969	10	,	,	PUNCT
ddj-47	969	11	g	g	PROPN
ddj-47	969	12	are	be	AUX
ddj-47	969	13	bases	basis	NOUN
ddj-47	969	14	and	and	CCONJ
ddj-47	969	15	thus	thus	ADV
ddj-47	969	16	polar	polar	ADJ
ddj-47	969	17	and	and	CCONJ
ddj-47	969	18	hydrophilic	hydrophilic	ADJ
ddj-47	969	19	.	.	PUNCT
ddj-47	970	1	in	in	ADP
ddj-47	970	2	the	the	DET
ddj-47	970	3	case	case	NOUN
ddj-47	970	4	of	of	ADP
ddj-47	970	5	dna	dna	PROPN
ddj-47	970	6	charge	charge	NOUN
ddj-47	970	7	conjugation	conjugation	NOUN
ddj-47	970	8	for	for	ADP
ddj-47	970	9	quarks	quarks	PROPN
ddj-47	970	10	corresponds	correspond	VERB
ddj-47	970	11	to	to	ADP
ddj-47	970	12	the	the	DET
ddj-47	970	13	puridine	puridine	NOUN
ddj-47	970	14	-	-	PUNCT
ddj-47	970	15	pyrimidine	pyrimidine	NOUN
ddj-47	970	16	complementarity	complementarity	NOUN
ddj-47	970	17	corresponding	correspond	VERB
ddj-47	970	18	to	to	ADP
ddj-47	970	19	conjugation	conjugation	NOUN
ddj-47	970	20	of	of	ADP
ddj-47	970	21	nucleotides	nucleotide	NOUN
ddj-47	970	22	.	.	PUNCT
ddj-47	971	1	the	the	DET
ddj-47	971	2	rule	rule	NOUN
ddj-47	971	3	applying	apply	VERB
ddj-47	971	4	in	in	ADP
ddj-47	971	5	the	the	DET
ddj-47	971	6	case	case	NOUN
ddj-47	971	7	of	of	ADP
ddj-47	971	8	amino	amino	NOUN
ddj-47	971	9	-	-	PUNCT
ddj-47	971	10	acids	acid	NOUN
ddj-47	971	11	would	would	AUX
ddj-47	971	12	predict	predict	VERB
ddj-47	971	13	t	t	PROPN
ddj-47	971	14	,	,	PUNCT
ddj-47	971	15	c	c	X
ddj-47	971	16	to	to	PART
ddj-47	971	17	be	be	AUX
ddj-47	971	18	hydrophobic	hydrophobic	NOUN
ddj-47	971	19	nucleotides	nucleotide	NOUN
ddj-47	971	20	which	which	PRON
ddj-47	971	21	does	do	AUX
ddj-47	971	22	not	not	PART
ddj-47	971	23	make	make	VERB
ddj-47	971	24	sense	sense	NOUN
ddj-47	971	25	.	.	PUNCT
ddj-47	972	1	therefore	therefore	ADV
ddj-47	972	2	it	it	PRON
ddj-47	972	3	seems	seem	VERB
ddj-47	972	4	that	that	SCONJ
ddj-47	972	5	hydrophily	hydrophily	NOUN
ddj-47	972	6	and	and	CCONJ
ddj-47	972	7	hydrophoby	hydrophoby	NOUN
ddj-47	972	8	can	can	AUX
ddj-47	972	9	not	not	PART
ddj-47	972	10	reduce	reduce	VERB
ddj-47	972	11	to	to	ADP
ddj-47	972	12	the	the	DET
ddj-47	972	13	interactions	interaction	NOUN
ddj-47	972	14	of	of	ADP
ddj-47	972	15	dark	dark	ADJ
ddj-47	972	16	quarks	quark	NOUN
ddj-47	972	17	and	and	CCONJ
ddj-47	972	18	that	that	SCONJ
ddj-47	972	19	they	they	PRON
ddj-47	972	20	only	only	ADV
ddj-47	972	21	represent	represent	VERB
ddj-47	972	22	conjugation	conjugation	NOUN
ddj-47	972	23	of	of	ADP
ddj-47	972	24	nucleotides	nucleotide	NOUN
ddj-47	972	25	symbolically	symbolically	ADV
ddj-47	972	26	.	.	PUNCT
ddj-47	973	1	5.2	5.2	NUM
ddj-47	973	2	an	an	DET
ddj-47	973	3	improved	improved	ADJ
ddj-47	973	4	model	model	NOUN
ddj-47	973	5	for	for	ADP
ddj-47	973	6	protein	protein	NOUN
ddj-47	973	7	folding	fold	VERB
ddj-47	973	8	to	to	PART
ddj-47	973	9	begin	begin	VERB
ddj-47	973	10	with	with	ADP
ddj-47	973	11	let	let	VERB
ddj-47	973	12	us	we	PRON
ddj-47	973	13	summarize	summarize	VERB
ddj-47	973	14	some	some	DET
ddj-47	973	15	basic	basic	ADJ
ddj-47	973	16	facts	fact	NOUN
ddj-47	973	17	about	about	ADP
ddj-47	973	18	protein	protein	NOUN
ddj-47	973	19	folding	folding	NOUN
ddj-47	973	20	.	.	PUNCT
ddj-47	974	1	1	1	X
ddj-47	974	2	.	.	X
ddj-47	974	3	hydrophily	hydrophily	NOUN
ddj-47	974	4	and	and	CCONJ
ddj-47	974	5	hydrophoby	hydrophoby	NOUN
ddj-47	974	6	play	play	VERB
ddj-47	974	7	a	a	DET
ddj-47	974	8	key	key	ADJ
ddj-47	974	9	role	role	NOUN
ddj-47	974	10	in	in	ADP
ddj-47	974	11	protein	protein	NOUN
ddj-47	974	12	folding	fold	VERB
ddj-47	974	13	and	and	CCONJ
ddj-47	974	14	dictate	dictate	VERB
ddj-47	974	15	to	to	ADP
ddj-47	974	16	a	a	DET
ddj-47	974	17	high	high	ADJ
ddj-47	974	18	degree	degree	NOUN
ddj-47	974	19	the	the	DET
ddj-47	974	20	resulting	result	VERB
ddj-47	974	21	folding	fold	VERB
ddj-47	974	22	patterns	pattern	NOUN
ddj-47	974	23	.	.	PUNCT
ddj-47	975	1	this	this	PRON
ddj-47	975	2	suggests	suggest	VERB
ddj-47	975	3	that	that	SCONJ
ddj-47	975	4	one	one	PRON
ddj-47	975	5	can	can	AUX
ddj-47	975	6	not	not	PART
ddj-47	975	7	neglect	neglect	VERB
ddj-47	975	8	the	the	DET
ddj-47	975	9	role	role	NOUN
ddj-47	975	10	of	of	ADP
ddj-47	975	11	water	water	NOUN
ddj-47	975	12	in	in	ADP
ddj-47	975	13	the	the	DET
ddj-47	975	14	process	process	NOUN
ddj-47	975	15	.	.	PUNCT
ddj-47	976	1	2	2	X
ddj-47	976	2	.	.	X
ddj-47	976	3	protein	protein	NOUN
ddj-47	976	4	folding	fold	VERB
ddj-47	976	5	proceeds	proceed	NOUN
ddj-47	976	6	from	from	ADP
ddj-47	976	7	short	short	ADJ
ddj-47	976	8	to	to	ADP
ddj-47	976	9	long	long	ADJ
ddj-47	976	10	length	length	NOUN
ddj-47	976	11	scales	scale	NOUN
ddj-47	976	12	starting	start	VERB
ddj-47	976	13	with	with	ADP
ddj-47	976	14	the	the	DET
ddj-47	976	15	formation	formation	NOUN
ddj-47	976	16	of	of	ADP
ddj-47	976	17	secondary	secondary	ADJ
ddj-47	976	18	structures	structure	NOUN
ddj-47	976	19	such	such	ADJ
ddj-47	976	20	as	as	ADP
ddj-47	976	21	alpha	alpha	ADJ
ddj-47	976	22	helices	helix	NOUN
ddj-47	976	23	,	,	PUNCT
ddj-47	976	24	beta	beta	NOUN
ddj-47	976	25	sheets	sheet	NOUN
ddj-47	976	26	,	,	PUNCT
ddj-47	976	27	and	and	CCONJ
ddj-47	976	28	random	random	ADJ
ddj-47	976	29	coil	coil	NOUN
ddj-47	976	30	portions	portion	NOUN
ddj-47	976	31	and	and	CCONJ
ddj-47	976	32	is	be	AUX
ddj-47	976	33	followed	follow	VERB
ddj-47	976	34	by	by	ADP
ddj-47	976	35	the	the	DET
ddj-47	976	36	formation	formation	NOUN
ddj-47	976	37	of	of	ADP
ddj-47	976	38	tertiary	tertiary	ADJ
ddj-47	976	39	and	and	CCONJ
ddj-47	976	40	higher	high	ADJ
ddj-47	976	41	structures	structure	NOUN
ddj-47	976	42	.	.	PUNCT
ddj-47	977	1	3	3	X
ddj-47	977	2	.	.	X
ddj-47	977	3	the	the	DET
ddj-47	977	4	formation	formation	NOUN
ddj-47	977	5	of	of	ADP
ddj-47	977	6	hydrogen	hydrogen	NOUN
ddj-47	977	7	bonds	bond	NOUN
ddj-47	977	8	is	be	AUX
ddj-47	977	9	in	in	ADP
ddj-47	977	10	a	a	DET
ddj-47	977	11	decisive	decisive	ADJ
ddj-47	977	12	role	role	NOUN
ddj-47	977	13	in	in	ADP
ddj-47	977	14	the	the	DET
ddj-47	977	15	formation	formation	NOUN
ddj-47	977	16	of	of	ADP
ddj-47	977	17	secondary	secondary	ADJ
ddj-47	977	18	structures	structure	NOUN
ddj-47	977	19	.	.	PUNCT
ddj-47	978	1	the	the	DET
ddj-47	978	2	mechanism	mechanism	NOUN
ddj-47	978	3	leading	lead	VERB
ddj-47	978	4	to	to	ADP
ddj-47	978	5	their	their	PRON
ddj-47	978	6	formation	formation	NOUN
ddj-47	978	7	might	might	AUX
ddj-47	978	8	be	be	AUX
ddj-47	978	9	contraction	contraction	NOUN
ddj-47	978	10	of	of	ADP
ddj-47	978	11	magnetic	magnetic	ADJ
ddj-47	978	12	flux	flux	NOUN
ddj-47	978	13	tube	tube	NOUN
ddj-47	978	14	by	by	ADP
ddj-47	978	15	a	a	DET
ddj-47	978	16	phase	phase	NOUN
ddj-47	978	17	transition	transition	NOUN
ddj-47	978	18	changing	change	VERB
ddj-47	978	19	planck	planck	NOUN
ddj-47	978	20	constant	constant	ADJ
ddj-47	978	21	.	.	PUNCT
ddj-47	979	1	4	4	X
ddj-47	979	2	.	.	X
ddj-47	979	3	the	the	DET
ddj-47	979	4	folding	fold	VERB
ddj-47	979	5	patterns	pattern	NOUN
ddj-47	979	6	do	do	AUX
ddj-47	979	7	not	not	PART
ddj-47	979	8	depend	depend	VERB
ddj-47	979	9	strongly	strongly	ADV
ddj-47	979	10	on	on	ADP
ddj-47	979	11	the	the	DET
ddj-47	979	12	precise	precise	ADJ
ddj-47	979	13	primary	primary	ADJ
ddj-47	979	14	structure	structure	NOUN
ddj-47	979	15	,	,	PUNCT
ddj-47	979	16	that	that	PRON
ddj-47	979	17	is	be	AUX
ddj-47	979	18	precise	precise	ADJ
ddj-47	979	19	amino	amino	ADJ
ddj-47	979	20	-	-	PUNCT
ddj-47	979	21	acid	acid	NOUN
ddj-47	979	22	decomposition	decomposition	NOUN
ddj-47	979	23	which	which	PRON
ddj-47	979	24	suggests	suggest	VERB
ddj-47	979	25	that	that	SCONJ
ddj-47	979	26	instead	instead	ADV
ddj-47	979	27	of	of	ADP
ddj-47	979	28	the	the	DET
ddj-47	979	29	detailed	detailed	ADJ
ddj-47	979	30	chemistry	chemistry	NOUN
ddj-47	979	31	the	the	DET
ddj-47	979	32	forces	force	NOUN
ddj-47	979	33	between	between	ADP
ddj-47	979	34	quarks	quark	NOUN
ddj-47	979	35	and	and	CCONJ
ddj-47	979	36	antiquarks	antiquark	NOUN
ddj-47	979	37	mediated	mediate	VERB
ddj-47	979	38	by	by	ADP
ddj-47	979	39	flux	flux	NOUN
ddj-47	979	40	tubes	tube	NOUN
ddj-47	979	41	is	be	AUX
ddj-47	979	42	what	what	PRON
ddj-47	979	43	matter	matter	NOUN
ddj-47	979	44	so	so	SCONJ
ddj-47	979	45	that	that	SCONJ
ddj-47	979	46	hydrophily	hydrophily	NOUN
ddj-47	979	47	and	and	CCONJ
ddj-47	979	48	hydrophoby	hydrophoby	NOUN
ddj-47	979	49	would	would	AUX
ddj-47	979	50	become	become	VERB
ddj-47	979	51	the	the	DET
ddj-47	979	52	basic	basic	ADJ
ddj-47	979	53	characterizers	characterizer	NOUN
ddj-47	979	54	of	of	ADP
ddj-47	979	55	the	the	DET
ddj-47	979	56	interaction	interaction	NOUN
ddj-47	979	57	.	.	PUNCT
ddj-47	980	1	the	the	DET
ddj-47	980	2	phase	phase	NOUN
ddj-47	980	3	transitions	transition	NOUN
ddj-47	980	4	changing	change	VERB
ddj-47	980	5	planck	planck	NOUN
ddj-47	980	6	constant	constant	ADJ
ddj-47	980	7	would	would	AUX
ddj-47	980	8	indeed	indeed	ADV
ddj-47	980	9	represent	represent	VERB
ddj-47	980	10	this	this	DET
ddj-47	980	11	kind	kind	NOUN
ddj-47	980	12	of	of	ADP
ddj-47	980	13	universal	universal	ADJ
ddj-47	980	14	interactions	interaction	NOUN
ddj-47	980	15	independent	independent	ADJ
ddj-47	980	16	of	of	ADP
ddj-47	980	17	the	the	DET
ddj-47	980	18	chemistry	chemistry	NOUN
ddj-47	980	19	.	.	PUNCT
ddj-47	981	1	5	5	X
ddj-47	981	2	.	.	X
ddj-47	981	3	in	in	ADP
ddj-47	981	4	the	the	DET
ddj-47	981	5	first	first	ADJ
ddj-47	981	6	approximation	approximation	NOUN
ddj-47	981	7	amino	amino	NOUN
ddj-47	981	8	-	-	PUNCT
ddj-47	981	9	acids	acid	NOUN
ddj-47	981	10	could	could	AUX
ddj-47	981	11	be	be	AUX
ddj-47	981	12	labeled	label	VERB
ddj-47	981	13	by	by	ADP
ddj-47	981	14	a	a	DET
ddj-47	981	15	variable	variable	NOUN
ddj-47	981	16	telling	tell	VERB
ddj-47	981	17	whether	whether	SCONJ
ddj-47	981	18	it	it	PRON
ddj-47	981	19	is	be	AUX
ddj-47	981	20	hydrophobic	hydrophobic	NOUN
ddj-47	981	21	,	,	PUNCT
ddj-47	981	22	hydrophilic	hydrophilic	NOUN
ddj-47	981	23	,	,	PUNCT
ddj-47	981	24	or	or	CCONJ
ddj-47	981	25	neither	neither	PRON
ddj-47	981	26	or	or	CCONJ
ddj-47	981	27	these	these	PRON
ddj-47	981	28	(	(	PUNCT
ddj-47	981	29	gly	gly	NOUN
ddj-47	981	30	)	)	PUNCT
ddj-47	981	31	.	.	PUNCT
ddj-47	982	1	this	this	DET
ddj-47	982	2	approximation	approximation	NOUN
ddj-47	982	3	would	would	AUX
ddj-47	982	4	be	be	AUX
ddj-47	982	5	broken	break	VERB
ddj-47	982	6	by	by	ADP
ddj-47	982	7	special	special	ADJ
ddj-47	982	8	amino	amino	NOUN
ddj-47	982	9	-	-	PUNCT
ddj-47	982	10	acids	acid	NOUN
ddj-47	982	11	which	which	PRON
ddj-47	982	12	appear	appear	VERB
ddj-47	982	13	in	in	ADP
ddj-47	982	14	edges	edge	NOUN
ddj-47	982	15	if	if	SCONJ
ddj-47	982	16	beta	beta	ADJ
ddj-47	982	17	sheets	sheet	NOUN
ddj-47	982	18	(	(	PUNCT
ddj-47	982	19	pro	pro	ADJ
ddj-47	982	20	)	)	PUNCT
ddj-47	982	21	and	and	CCONJ
ddj-47	982	22	cys	cys	PROPN
ddj-47	982	23	which	which	PRON
ddj-47	982	24	often	often	ADV
ddj-47	982	25	appear	appear	VERB
ddj-47	982	26	as	as	ADP
ddj-47	982	27	s	s	NOUN
ddj-47	982	28	-	-	PUNCT
ddj-47	982	29	s	s	NOUN
ddj-47	982	30	boded	boded	ADJ
ddj-47	982	31	pair	pair	NOUN
ddj-47	982	32	in	in	ADP
ddj-47	982	33	junctions	junction	NOUN
ddj-47	982	34	.	.	PUNCT
ddj-47	983	1	by	by	ADP
ddj-47	983	2	bringing	bring	VERB
ddj-47	983	3	in	in	ADP
ddj-47	983	4	forces	force	NOUN
ddj-47	983	5	depending	depend	VERB
ddj-47	983	6	on	on	ADP
ddj-47	983	7	the	the	DET
ddj-47	983	8	angles	angle	NOUN
ddj-47	983	9	between	between	ADP
ddj-47	983	10	tangent	tangent	ADJ
ddj-47	983	11	vectors	vector	NOUN
ddj-47	983	12	of	of	ADP
ddj-47	983	13	successive	successive	ADJ
ddj-47	983	14	amino	amino	NOUN
ddj-47	983	15	-	-	PUNCT
ddj-47	983	16	acids	acid	NOUN
ddj-47	983	17	and	and	CCONJ
ddj-47	983	18	on	on	ADP
ddj-47	983	19	amino	amino	NOUN
ddj-47	983	20	-	-	PUNCT
ddj-47	983	21	adics	adics	NOUN
ddj-47	983	22	themseles	themsele	NOUN
ddj-47	983	23	this	this	DET
ddj-47	983	24	tendency	tendency	NOUN
ddj-47	983	25	could	could	AUX
ddj-47	983	26	be	be	AUX
ddj-47	983	27	modeled	model	VERB
ddj-47	983	28	.	.	PUNCT
ddj-47	984	1	5.3	5.3	NUM
ddj-47	984	2	a	a	DET
ddj-47	984	3	model	model	NOUN
ddj-47	984	4	for	for	ADP
ddj-47	984	5	which	which	PRON
ddj-47	984	6	the	the	DET
ddj-47	984	7	magnetic	magnetic	ADJ
ddj-47	984	8	body	body	NOUN
ddj-47	984	9	of	of	ADP
ddj-47	984	10	water	water	NOUN
ddj-47	984	11	is	be	AUX
ddj-47	984	12	involved	involve	VERB
ddj-47	984	13	the	the	DET
ddj-47	984	14	alternative	alternative	ADJ
ddj-47	984	15	approach	approach	NOUN
ddj-47	984	16	to	to	ADP
ddj-47	984	17	protein	protein	NOUN
ddj-47	984	18	folding	folding	NOUN
ddj-47	984	19	starts	start	VERB
ddj-47	984	20	from	from	ADP
ddj-47	984	21	the	the	DET
ddj-47	984	22	general	general	ADJ
ddj-47	984	23	vision	vision	NOUN
ddj-47	984	24	about	about	ADP
ddj-47	984	25	magnetic	magnetic	ADJ
ddj-47	984	26	body	body	NOUN
ddj-47	984	27	containing	contain	VERB
ddj-47	984	28	dark	dark	ADJ
ddj-47	984	29	matter	matter	NOUN
ddj-47	984	30	as	as	ADP
ddj-47	984	31	a	a	DET
ddj-47	984	32	controller	controller	NOUN
ddj-47	984	33	of	of	ADP
ddj-47	984	34	visible	visible	ADJ
ddj-47	984	35	matter	matter	NOUN
ddj-47	984	36	in	in	ADP
ddj-47	984	37	living	living	NOUN
ddj-47	984	38	system	system	NOUN
ddj-47	984	39	.	.	PUNCT
ddj-47	985	1	the	the	DET
ddj-47	985	2	protein	protein	NOUN
ddj-47	985	3	and	and	CCONJ
ddj-47	985	4	its	its	PRON
ddj-47	985	5	magnetic	magnetic	ADJ
ddj-47	985	6	body	body	NOUN
ddj-47	985	7	would	would	AUX
ddj-47	985	8	be	be	AUX
ddj-47	985	9	regarded	regard	VERB
ddj-47	985	10	as	as	ADP
ddj-47	985	11	a	a	DET
ddj-47	985	12	living	living	NOUN
ddj-47	985	13	system	system	NOUN
ddj-47	985	14	in	in	ADP
ddj-47	985	15	itself	itself	PRON
ddj-47	985	16	.	.	PUNCT
ddj-47	986	1	1	1	X
ddj-47	986	2	.	.	X
ddj-47	986	3	magnetic	magnetic	ADJ
ddj-47	986	4	body	body	NOUN
ddj-47	986	5	must	must	AUX
ddj-47	986	6	have	have	VERB
ddj-47	986	7	large	large	ADJ
ddj-47	986	8	number	number	NOUN
ddj-47	986	9	of	of	ADP
ddj-47	986	10	flux	flux	NOUN
ddj-47	986	11	tube	tube	NOUN
ddj-47	986	12	contacts	contact	NOUN
ddj-47	986	13	to	to	ADP
ddj-47	986	14	the	the	DET
ddj-47	986	15	visible	visible	ADJ
ddj-47	986	16	matter	matter	NOUN
ddj-47	986	17	.	.	PUNCT
ddj-47	987	1	an	an	DET
ddj-47	987	2	excellent	excellent	ADJ
ddj-47	987	3	candidate	candidate	NOUN
ddj-47	987	4	for	for	ADP
ddj-47	987	5	the	the	DET
ddj-47	987	6	magnetic	magnetic	ADJ
ddj-47	987	7	body	body	NOUN
ddj-47	987	8	is	be	AUX
ddj-47	987	9	that	that	PRON
ddj-47	987	10	assignable	assignable	ADJ
ddj-47	987	11	with	with	ADP
ddj-47	987	12	water	water	NOUN
ddj-47	987	13	and	and	CCONJ
ddj-47	987	14	having	have	VERB
ddj-47	987	15	flux	flux	NOUN
ddj-47	987	16	tube	tube	NOUN
ddj-47	987	17	connections	connection	NOUN
ddj-47	987	18	to	to	ADP
ddj-47	987	19	dna	dna	PROPN
ddj-47	987	20	and	and	CCONJ
ddj-47	987	21	both	both	CCONJ
ddj-47	987	22	hydrophilic	hydrophilic	ADJ
ddj-47	987	23	and	and	CCONJ
ddj-47	987	24	hydrophobic	hydrophobic	NOUN
ddj-47	987	25	amino	amino	NOUN
ddj-47	987	26	-	-	PUNCT
ddj-47	987	27	acids	acid	NOUN
ddj-47	987	28	.	.	PUNCT
ddj-47	988	1	the	the	DET
ddj-47	988	2	magnetic	magnetic	ADJ
ddj-47	988	3	body	body	NOUN
ddj-47	988	4	could	could	AUX
ddj-47	988	5	control	control	VERB
ddj-47	988	6	and	and	CCONJ
ddj-47	988	7	at	at	ADP
ddj-47	988	8	least	least	ADJ
ddj-47	988	9	fasten	fasten	VERB
ddj-47	988	10	the	the	DET
ddj-47	988	11	selforganization	selforganization	NOUN
ddj-47	988	12	process	process	NOUN
ddj-47	988	13	leading	lead	VERB
ddj-47	988	14	to	to	ADP
ddj-47	988	15	the	the	DET
ddj-47	988	16	folding	fold	VERB
ddj-47	988	17	pattern	pattern	NOUN
ddj-47	988	18	which	which	PRON
ddj-47	988	19	by	by	ADP
ddj-47	988	20	applying	apply	VERB
ddj-47	988	21	standard	standard	ADJ
ddj-47	988	22	argument	argument	NOUN
ddj-47	988	23	would	would	AUX
ddj-47	988	24	otherwise	otherwise	ADV
ddj-47	988	25	take	take	VERB
ddj-47	988	26	astronomical	astronomical	ADJ
ddj-47	988	27	time	time	NOUN
ddj-47	988	28	otherwise	otherwise	ADV
ddj-47	988	29	.	.	PUNCT
ddj-47	989	1	the	the	DET
ddj-47	989	2	two	two	NUM
ddj-47	989	3	-	-	PUNCT
ddj-47	989	4	step	step	NOUN
ddj-47	989	5	attractive	attractive	ADJ
ddj-47	989	6	connections	connection	NOUN
ddj-47	989	7	between	between	ADP
ddj-47	989	8	all	all	DET
ddj-47	989	9	hydrophilic	hydrophilic	ADJ
ddj-47	989	10	amino	amino	NOUN
ddj-47	989	11	-	-	PUNCT
ddj-47	989	12	acids	acid	NOUN
ddj-47	989	13	would	would	AUX
ddj-47	989	14	be	be	AUX
ddj-47	989	15	possible	possible	ADJ
ddj-47	989	16	via	via	ADP
ddj-47	989	17	the	the	DET
ddj-47	989	18	magnetic	magnetic	ADJ
ddj-47	989	19	body	body	NOUN
ddj-47	989	20	of	of	ADP
ddj-47	989	21	water	water	NOUN
ddj-47	989	22	.	.	PUNCT
ddj-47	990	1	the	the	DET
ddj-47	990	2	non	non	ADJ
ddj-47	990	3	-	-	ADJ
ddj-47	990	4	hydrophilic	hydrophilic	ADJ
ddj-47	990	5	amino	amino	NOUN
ddj-47	990	6	-	-	PUNCT
ddj-47	990	7	acids	acid	NOUN
ddj-47	990	8	not	not	PART
ddj-47	990	9	in	in	ADP
ddj-47	990	10	direct	direct	ADJ
ddj-47	990	11	contact	contact	NOUN
ddj-47	990	12	with	with	ADP
ddj-47	990	13	water	water	NOUN
ddj-47	990	14	are	be	AUX
ddj-47	990	15	known	know	VERB
ddj-47	990	16	to	to	PART
ddj-47	990	17	be	be	AUX
ddj-47	990	18	more	more	ADV
ddj-47	990	19	like	like	ADP
ddj-47	990	20	passive	passive	ADJ
ddj-47	990	21	structural	structural	ADJ
ddj-47	990	22	stuff	stuff	NOUN
ddj-47	990	23	responsible	responsible	ADJ
ddj-47	990	24	for	for	ADP
ddj-47	990	25	a	a	DET
ddj-47	990	26	fixed	fix	VERB
ddj-47	990	27	structure	structure	NOUN
ddj-47	990	28	but	but	CCONJ
ddj-47	990	29	not	not	PART
ddj-47	990	30	so	so	ADV
ddj-47	990	31	relevant	relevant	ADJ
ddj-47	990	32	for	for	ADP
ddj-47	990	33	the	the	DET
ddj-47	990	34	functioning	functioning	NOUN
ddj-47	990	35	of	of	ADP
ddj-47	990	36	the	the	DET
ddj-47	990	37	bio	bio	NOUN
ddj-47	990	38	-	-	NOUN
ddj-47	990	39	molecule	molecule	NOUN
ddj-47	990	40	.	.	PUNCT
ddj-47	991	1	hydrophily	hydrophily	NOUN
ddj-47	991	2	and	and	CCONJ
ddj-47	991	3	hydrophoby	hydrophoby	NOUN
ddj-47	991	4	would	would	AUX
ddj-47	991	5	reflect	reflect	VERB
ddj-47	991	6	the	the	DET
ddj-47	991	7	dependence	dependence	NOUN
ddj-47	991	8	of	of	ADP
ddj-47	991	9	interaction	interaction	NOUN
ddj-47	991	10	energy	energy	NOUN
ddj-47	991	11	on	on	ADP
ddj-47	991	12	the	the	DET
ddj-47	991	13	value	value	NOUN
ddj-47	991	14	of	of	ADP
ddj-47	991	15	planck	planck	NOUN
ddj-47	991	16	constant	constant	ADJ
ddj-47	991	17	associated	associate	VERB
ddj-47	991	18	with	with	ADP
ddj-47	991	19	the	the	DET
ddj-47	991	20	flux	flux	NOUN
ddj-47	991	21	tube	tube	NOUN
ddj-47	991	22	mediating	mediate	VERB
ddj-47	991	23	the	the	DET
ddj-47	991	24	interaction	interaction	NOUN
ddj-47	991	25	.	.	PUNCT
ddj-47	992	1	2	2	X
ddj-47	992	2	.	.	X
ddj-47	992	3	this	this	DET
ddj-47	992	4	picture	picture	NOUN
ddj-47	992	5	implies	imply	VERB
ddj-47	992	6	a	a	DET
ddj-47	992	7	straightforward	straightforward	ADJ
ddj-47	992	8	modification	modification	NOUN
ddj-47	992	9	of	of	ADP
ddj-47	992	10	the	the	DET
ddj-47	992	11	earlier	early	ADJ
ddj-47	992	12	model	model	NOUN
ddj-47	992	13	.	.	PUNCT
ddj-47	993	1	the	the	DET
ddj-47	993	2	simplest	simple	ADJ
ddj-47	993	3	model	model	NOUN
ddj-47	993	4	would	would	AUX
ddj-47	993	5	minimize	minimize	VERB
ddj-47	993	6	a	a	DET
ddj-47	993	7	potential	potential	ADJ
ddj-47	993	8	function	function	NOUN
ddj-47	993	9	v	v	NOUN
ddj-47	993	10	expressible	expressible	ADJ
ddj-47	993	11	as	as	ADP
ddj-47	993	12	a	a	DET
ddj-47	993	13	sum	sum	NOUN
ddj-47	993	14	v	v	ADP
ddj-47	993	15	=	=	SYM
ddj-47	993	16	v1	v1	VERB
ddj-47	993	17	+	+	NOUN
ddj-47	993	18	v2	v2	PROPN
ddj-47	993	19	+	+	ADJ
ddj-47	993	20	v3	v3	PROPN
ddj-47	993	21	of	of	ADP
ddj-47	993	22	three	three	NUM
ddj-47	993	23	terms	term	NOUN
ddj-47	993	24	.	.	PUNCT
ddj-47	994	1	v1	v1	NOUN
ddj-47	994	2	would	would	AUX
ddj-47	994	3	be	be	AUX
ddj-47	994	4	sum	sum	NOUN
ddj-47	994	5	of	of	ADP
ddj-47	994	6	the	the	DET
ddj-47	994	7	values	value	NOUN
ddj-47	994	8	of	of	ADP
ddj-47	994	9	a	a	DET
ddj-47	994	10	universal	universal	ADJ
ddj-47	994	11	two	two	NUM
ddj-47	994	12	-	-	PUNCT
ddj-47	994	13	particle	particle	NOUN
ddj-47	994	14	potential	potential	ADJ
ddj-47	994	15	function	function	NOUN
ddj-47	994	16	vphi	vphi	NOUN
ddj-47	994	17	,	,	PUNCT
ddj-47	994	18	phi(r	phi(r	PROPN
ddj-47	994	19	)	)	PUNCT
ddj-47	994	20	for	for	ADP
ddj-47	994	21	arguments	argument	NOUN
ddj-47	994	22	rij	rij	ADJ
ddj-47	995	1	=	=	PUNCT
ddj-47	995	2	|ri	|ri	PROPN
ddj-47	995	3	−	−	PROPN
ddj-47	995	4	rj	rj	PROPN
ddj-47	995	5	|	|	ADV
ddj-47	995	6	varying	vary	VERB
ddj-47	995	7	over	over	ADP
ddj-47	995	8	all	all	DET
ddj-47	995	9	hydrophilic	hydrophilic	ADJ
ddj-47	995	10	amino	amino	NOUN
ddj-47	995	11	-	-	PUNCT
ddj-47	995	12	acid	acid	NOUN
ddj-47	995	13	pairs	pair	NOUN
ddj-47	995	14	and	and	CCONJ
ddj-47	995	15	giving	give	VERB
ddj-47	995	16	rise	rise	NOUN
ddj-47	995	17	to	to	ADP
ddj-47	995	18	an	an	DET
ddj-47	995	19	attractive	attractive	ADJ
ddj-47	995	20	force	force	NOUN
ddj-47	995	21	.	.	PUNCT
ddj-47	996	1	v2	v2	NOUN
ddj-47	996	2	would	would	AUX
ddj-47	996	3	be	be	AUX
ddj-47	996	4	a	a	DET
ddj-47	996	5	sum	sum	NOUN
ddj-47	996	6	of	of	ADP
ddj-47	996	7	a	a	DET
ddj-47	996	8	universal	universal	ADJ
ddj-47	996	9	twoparticle	twoparticle	NOUN
ddj-47	996	10	potential	potential	ADJ
ddj-47	996	11	function	function	NOUN
ddj-47	996	12	vpho	vpho	NOUN
ddj-47	996	13	,	,	PUNCT
ddj-47	996	14	pho(r	pho(r	NOUN
ddj-47	996	15	)	)	PUNCT
ddj-47	996	16	for	for	ADP
ddj-47	996	17	arguments	argument	NOUN
ddj-47	996	18	rij	rij	X
ddj-47	996	19	=	=	SYM
ddj-47	996	20	|ri−	|ri−	PROPN
ddj-47	996	21	rj	rj	PROPN
ddj-47	996	22	|	|	ADV
ddj-47	996	23	varying	vary	VERB
ddj-47	996	24	over	over	ADP
ddj-47	996	25	all	all	DET
ddj-47	996	26	hydrophobic	hydrophobic	ADJ
ddj-47	996	27	amino	amino	NOUN
ddj-47	996	28	-	-	PUNCT
ddj-47	996	29	acid	acid	NOUN
ddj-47	996	30	pairs	pair	NOUN
ddj-47	996	31	.	.	PUNCT
ddj-47	997	1	v3	v3	PROPN
ddj-47	997	2	would	would	AUX
ddj-47	997	3	be	be	AUX
ddj-47	997	4	would	would	AUX
ddj-47	997	5	be	be	AUX
ddj-47	997	6	sum	sum	NOUN
ddj-47	997	7	of	of	ADP
ddj-47	997	8	the	the	DET
ddj-47	997	9	values	value	NOUN
ddj-47	997	10	of	of	ADP
ddj-47	997	11	a	a	DET
ddj-47	997	12	universal	universal	ADJ
ddj-47	997	13	potential	potential	ADJ
ddj-47	997	14	function	function	NOUN
ddj-47	997	15	vphi	vphi	NOUN
ddj-47	997	16	,	,	PUNCT
ddj-47	997	17	pho(r	pho(r	PROPN
ddj-47	997	18	)	)	PUNCT
ddj-47	997	19	for	for	ADP
ddj-47	997	20	arguments	argument	NOUN
ddj-47	997	21	rij	rij	ADJ
ddj-47	998	1	=	=	PUNCT
ddj-47	998	2	|ri	|ri	PROPN
ddj-47	998	3	−	−	PROPN
ddj-47	998	4	rj	rj	PROPN
ddj-47	998	5	|	|	ADV
ddj-47	998	6	varying	vary	VERB
ddj-47	998	7	over	over	ADP
ddj-47	998	8	all	all	DET
ddj-47	998	9	pairs	pair	NOUN
ddj-47	998	10	of	of	ADP
ddj-47	998	11	hydrophilic	hydrophilic	ADJ
ddj-47	998	12	and	and	CCONJ
ddj-47	998	13	hydrophobic	hydrophobic	NOUN
ddj-47	998	14	amino	amino	NOUN
ddj-47	998	15	-	-	PUNCT
ddj-47	998	16	acids	acid	NOUN
ddj-47	998	17	.	.	PUNCT
ddj-47	999	1	this	this	DET
ddj-47	999	2	potential	potential	ADJ
ddj-47	999	3	function	function	NOUN
ddj-47	999	4	issn	issn	NOUN
ddj-47	999	5	:	:	PUNCT
ddj-47	999	6	2159	2159	NUM
ddj-47	999	7	-	-	SYM
ddj-47	999	8	0465	0465	NUM
ddj-47	999	9	dna	dna	PROPN
ddj-47	999	10	decipher	decipher	PROPN
ddj-47	999	11	journal	journal	PROPN
ddj-47	999	12	june	june	PROPN
ddj-47	999	13	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	999	14	published	publish	VERB
ddj-47	999	15	by	by	ADP
ddj-47	999	16	quantumdream	quantumdream	PROPN
ddj-47	999	17	,	,	PUNCT
ddj-47	999	18	inc	inc	PROPN
ddj-47	999	19	.	.	PROPN
ddj-47	999	20	dna	dna	PROPN
ddj-47	999	21	decipher	decipher	PROPN
ddj-47	999	22	journal	journal	NOUN
ddj-47	999	23	|	|	ADV
ddj-47	999	24	may	may	AUX
ddj-47	999	25	2013	2013	NUM
ddj-47	999	26	|	|	ADV
ddj-47	999	27	volume	volume	NOUN
ddj-47	999	28	3	3	NUM
ddj-47	999	29	|	|	NOUN
ddj-47	999	30	issue	issue	VERB
ddj-47	999	31	1	1	NUM
ddj-47	999	32	|	|	ADV
ddj-47	999	33	pp	pp	ADJ
ddj-47	999	34	.	.	PUNCT
ddj-47	1000	1	58	58	NUM
ddj-47	1000	2	-	-	SYM
ddj-47	1000	3	88	88	NUM
ddj-47	1000	4	87	87	NUM
ddj-47	1000	5	pitkänen	pitkänen	NOUN
ddj-47	1000	6	,	,	PUNCT
ddj-47	1000	7	m.	m.	NOUN
ddj-47	1000	8	,	,	PUNCT
ddj-47	1000	9	a	a	DET
ddj-47	1000	10	model	model	NOUN
ddj-47	1000	11	for	for	ADP
ddj-47	1000	12	protein	protein	NOUN
ddj-47	1000	13	folding	folding	NOUN
ddj-47	1000	14	and	and	CCONJ
ddj-47	1000	15	biocatalysis	biocatalysis	NOUN
ddj-47	1000	16	would	would	AUX
ddj-47	1000	17	induce	induce	VERB
ddj-47	1000	18	a	a	DET
ddj-47	1000	19	repulsive	repulsive	ADJ
ddj-47	1000	20	force	force	NOUN
ddj-47	1000	21	.	.	PUNCT
ddj-47	1001	1	besides	besides	SCONJ
ddj-47	1001	2	this	this	DET
ddj-47	1001	3	a	a	DET
ddj-47	1001	4	constraint	constraint	NOUN
ddj-47	1001	5	force	force	NOUN
ddj-47	1001	6	due	due	ADP
ddj-47	1001	7	to	to	ADP
ddj-47	1001	8	the	the	DET
ddj-47	1001	9	fact	fact	NOUN
ddj-47	1001	10	that	that	SCONJ
ddj-47	1001	11	amino	amino	ADJ
ddj-47	1001	12	-	-	PUNCT
ddj-47	1001	13	acids	acid	NOUN
ddj-47	1001	14	form	form	NOUN
ddj-47	1001	15	a	a	DET
ddj-47	1001	16	sequence	sequence	NOUN
ddj-47	1001	17	would	would	AUX
ddj-47	1001	18	be	be	AUX
ddj-47	1001	19	present	present	ADJ
ddj-47	1001	20	.	.	PUNCT
ddj-47	1002	1	3	3	X
ddj-47	1002	2	.	.	X
ddj-47	1002	3	the	the	DET
ddj-47	1002	4	resultant	resultant	NOUN
ddj-47	1002	5	of	of	ADP
ddj-47	1002	6	the	the	DET
ddj-47	1002	7	forces	force	NOUN
ddj-47	1002	8	along	along	ADP
ddj-47	1002	9	lines	line	NOUN
ddj-47	1002	10	connecting	connect	VERB
ddj-47	1002	11	amino	amino	NOUN
ddj-47	1002	12	-	-	PUNCT
ddj-47	1002	13	acids	acid	NOUN
ddj-47	1002	14	would	would	AUX
ddj-47	1002	15	be	be	AUX
ddj-47	1002	16	parallel	parallel	ADJ
ddj-47	1002	17	to	to	ADP
ddj-47	1002	18	the	the	DET
ddj-47	1002	19	amino	amino	NOUN
ddj-47	1002	20	-	-	PUNCT
ddj-47	1002	21	acid	acid	NOUN
ddj-47	1002	22	sequence	sequence	NOUN
ddj-47	1002	23	in	in	ADP
ddj-47	1002	24	the	the	DET
ddj-47	1002	25	mechanical	mechanical	ADJ
ddj-47	1002	26	equilibrium	equilibrium	NOUN
ddj-47	1002	27	.	.	PUNCT
ddj-47	1003	1	hydrogen	hydrogen	NOUN
ddj-47	1003	2	bonds	bond	NOUN
ddj-47	1003	3	and	and	CCONJ
ddj-47	1003	4	other	other	ADJ
ddj-47	1003	5	bonds	bond	NOUN
ddj-47	1003	6	are	be	AUX
ddj-47	1003	7	indeed	indeed	ADV
ddj-47	1003	8	formed	form	VERB
ddj-47	1003	9	between	between	ADP
ddj-47	1003	10	neighboring	neighboring	NOUN
ddj-47	1003	11	hydrophilic	hydrophilic	ADJ
ddj-47	1003	12	amino	amino	NOUN
ddj-47	1003	13	-	-	PUNCT
ddj-47	1003	14	acids	acid	NOUN
ddj-47	1003	15	and	and	CCONJ
ddj-47	1003	16	the	the	DET
ddj-47	1003	17	contraction	contraction	NOUN
ddj-47	1003	18	of	of	ADP
ddj-47	1003	19	the	the	DET
ddj-47	1003	20	flux	flux	NOUN
ddj-47	1003	21	tubes	tube	NOUN
ddj-47	1003	22	connecting	connect	VERB
ddj-47	1003	23	the	the	DET
ddj-47	1003	24	amino	amino	NOUN
ddj-47	1003	25	-	-	PUNCT
ddj-47	1003	26	acids	acid	NOUN
ddj-47	1003	27	in	in	ADP
ddj-47	1003	28	question	question	NOUN
ddj-47	1003	29	to	to	ADP
ddj-47	1003	30	the	the	DET
ddj-47	1003	31	magnetic	magnetic	ADJ
ddj-47	1003	32	body	body	NOUN
ddj-47	1003	33	of	of	ADP
ddj-47	1003	34	water	water	NOUN
ddj-47	1003	35	could	could	AUX
ddj-47	1003	36	be	be	AUX
ddj-47	1003	37	the	the	DET
ddj-47	1003	38	mechanism	mechanism	NOUN
ddj-47	1003	39	.	.	PUNCT
ddj-47	1004	1	the	the	DET
ddj-47	1004	2	model	model	NOUN
ddj-47	1004	3	seems	seem	VERB
ddj-47	1004	4	to	to	PART
ddj-47	1004	5	be	be	AUX
ddj-47	1004	6	consistent	consistent	ADJ
ddj-47	1004	7	with	with	ADP
ddj-47	1004	8	the	the	DET
ddj-47	1004	9	basic	basic	ADJ
ddj-47	1004	10	qualitative	qualitative	ADJ
ddj-47	1004	11	facts	fact	NOUN
ddj-47	1004	12	about	about	ADP
ddj-47	1004	13	folding	fold	VERB
ddj-47	1004	14	.	.	PUNCT
ddj-47	1005	1	the	the	DET
ddj-47	1005	2	quantitative	quantitative	ADJ
ddj-47	1005	3	testing	testing	NOUN
ddj-47	1005	4	of	of	ADP
ddj-47	1005	5	the	the	DET
ddj-47	1005	6	model	model	NOUN
ddj-47	1005	7	would	would	AUX
ddj-47	1005	8	require	require	VERB
ddj-47	1005	9	determination	determination	NOUN
ddj-47	1005	10	of	of	ADP
ddj-47	1005	11	the	the	DET
ddj-47	1005	12	conformations	conformation	NOUN
ddj-47	1005	13	minimizing	minimize	VERB
ddj-47	1005	14	the	the	DET
ddj-47	1005	15	potential	potential	ADJ
ddj-47	1005	16	function	function	NOUN
ddj-47	1005	17	subject	subject	ADJ
ddj-47	1005	18	to	to	ADP
ddj-47	1005	19	the	the	DET
ddj-47	1005	20	constraint	constraint	NOUN
ddj-47	1005	21	provided	provide	VERB
ddj-47	1005	22	by	by	ADP
ddj-47	1005	23	amino	amino	NOUN
ddj-47	1005	24	-	-	PUNCT
ddj-47	1005	25	acid	acid	NOUN
ddj-47	1005	26	sequence	sequence	NOUN
ddj-47	1005	27	.	.	PUNCT
ddj-47	1006	1	here	here	ADV
ddj-47	1006	2	of	of	ADP
ddj-47	1006	3	course	course	NOUN
ddj-47	1006	4	the	the	DET
ddj-47	1006	5	freedom	freedom	NOUN
ddj-47	1006	6	to	to	PART
ddj-47	1006	7	choose	choose	VERB
ddj-47	1006	8	the	the	DET
ddj-47	1006	9	three	three	NUM
ddj-47	1006	10	functions	function	NOUN
ddj-47	1006	11	provides	provide	VERB
ddj-47	1006	12	a	a	DET
ddj-47	1006	13	considerable	considerable	ADJ
ddj-47	1006	14	flexibility	flexibility	NOUN
ddj-47	1006	15	and	and	CCONJ
ddj-47	1006	16	symmetry	symmetry	NOUN
ddj-47	1006	17	arguments	argument	NOUN
ddj-47	1006	18	might	might	AUX
ddj-47	1006	19	allow	allow	VERB
ddj-47	1006	20	to	to	PART
ddj-47	1006	21	pose	pose	VERB
ddj-47	1006	22	conditions	condition	NOUN
ddj-47	1006	23	on	on	ADP
ddj-47	1006	24	the	the	DET
ddj-47	1006	25	form	form	NOUN
ddj-47	1006	26	of	of	ADP
ddj-47	1006	27	these	these	DET
ddj-47	1006	28	functions	function	NOUN
ddj-47	1006	29	.	.	PUNCT
ddj-47	1007	1	4	4	X
ddj-47	1007	2	.	.	X
ddj-47	1007	3	one	one	PRON
ddj-47	1007	4	could	could	AUX
ddj-47	1007	5	also	also	ADV
ddj-47	1007	6	include	include	VERB
ddj-47	1007	7	to	to	ADP
ddj-47	1007	8	the	the	DET
ddj-47	1007	9	potential	potential	ADJ
ddj-47	1007	10	function	function	NOUN
ddj-47	1007	11	describing	describe	VERB
ddj-47	1007	12	a	a	DET
ddj-47	1007	13	direct	direct	ADJ
ddj-47	1007	14	interaction	interaction	NOUN
ddj-47	1007	15	with	with	ADP
ddj-47	1007	16	water	water	NOUN
ddj-47	1007	17	molecules	molecule	NOUN
ddj-47	1007	18	depending	depend	VERB
ddj-47	1007	19	on	on	ADP
ddj-47	1007	20	parameters	parameter	NOUN
ddj-47	1007	21	like	like	ADP
ddj-47	1007	22	ph	ph	NOUN
ddj-47	1007	23	affecting	affect	VERB
ddj-47	1007	24	the	the	DET
ddj-47	1007	25	folding	fold	VERB
ddj-47	1007	26	pattern	pattern	NOUN
ddj-47	1007	27	.	.	PUNCT
ddj-47	1008	1	the	the	DET
ddj-47	1008	2	resultant	resultant	NOUN
ddj-47	1008	3	for	for	ADP
ddj-47	1008	4	a	a	DET
ddj-47	1008	5	given	give	VERB
ddj-47	1008	6	amino	amino	NOUN
ddj-47	1008	7	-	-	PUNCT
ddj-47	1008	8	acid	acid	NOUN
ddj-47	1008	9	would	would	AUX
ddj-47	1008	10	be	be	AUX
ddj-47	1008	11	sum	sum	NOUN
ddj-47	1008	12	of	of	ADP
ddj-47	1008	13	forces	force	NOUN
ddj-47	1008	14	directed	direct	VERB
ddj-47	1008	15	from	from	ADP
ddj-47	1008	16	a	a	DET
ddj-47	1008	17	hydrophilic	hydrophilic	ADJ
ddj-47	1008	18	amino	amino	NOUN
ddj-47	1008	19	-	-	PUNCT
ddj-47	1008	20	acids	acid	NOUN
ddj-47	1008	21	to	to	ADP
ddj-47	1008	22	neighboring	neighboring	NOUN
ddj-47	1008	23	water	water	NOUN
ddj-47	1008	24	molecules	molecule	NOUN
ddj-47	1008	25	.	.	PUNCT
ddj-47	1009	1	it	it	PRON
ddj-47	1009	2	is	be	AUX
ddj-47	1009	3	not	not	PART
ddj-47	1009	4	clear	clear	ADJ
ddj-47	1009	5	whether	whether	SCONJ
ddj-47	1009	6	the	the	DET
ddj-47	1009	7	normal	normal	ADJ
ddj-47	1009	8	component	component	NOUN
ddj-47	1009	9	of	of	ADP
ddj-47	1009	10	this	this	DET
ddj-47	1009	11	force	force	NOUN
ddj-47	1009	12	could	could	AUX
ddj-47	1009	13	be	be	AUX
ddj-47	1009	14	compensated	compensate	VERB
ddj-47	1009	15	by	by	ADP
ddj-47	1009	16	the	the	DET
ddj-47	1009	17	induced	induced	ADJ
ddj-47	1009	18	forces	force	NOUN
ddj-47	1009	19	between	between	ADP
ddj-47	1009	20	amino	amino	NOUN
ddj-47	1009	21	-	-	PUNCT
ddj-47	1009	22	acids	acid	NOUN
ddj-47	1009	23	in	in	ADP
ddj-47	1009	24	a	a	DET
ddj-47	1009	25	typical	typical	ADJ
ddj-47	1009	26	equilibrium	equilibrium	NOUN
ddj-47	1009	27	configuration	configuration	NOUN
ddj-47	1009	28	and	and	CCONJ
ddj-47	1009	29	the	the	DET
ddj-47	1009	30	formation	formation	NOUN
ddj-47	1009	31	of	of	ADP
ddj-47	1009	32	hydrogen	hydrogen	NOUN
ddj-47	1009	33	bonds	bond	NOUN
ddj-47	1009	34	involving	involve	VERB
ddj-47	1009	35	the	the	DET
ddj-47	1009	36	contraction	contraction	NOUN
ddj-47	1009	37	of	of	ADP
ddj-47	1009	38	the	the	DET
ddj-47	1009	39	flux	flux	NOUN
ddj-47	1009	40	tube	tube	NOUN
ddj-47	1009	41	could	could	AUX
ddj-47	1009	42	be	be	AUX
ddj-47	1009	43	the	the	DET
ddj-47	1009	44	manner	manner	NOUN
ddj-47	1009	45	to	to	PART
ddj-47	1009	46	achieve	achieve	VERB
ddj-47	1009	47	this	this	PRON
ddj-47	1009	48	.	.	PUNCT
ddj-47	1010	1	the	the	DET
ddj-47	1010	2	alternative	alternative	ADJ
ddj-47	1010	3	model	model	NOUN
ddj-47	1010	4	is	be	AUX
ddj-47	1010	5	more	more	ADV
ddj-47	1010	6	complicated	complicated	ADJ
ddj-47	1010	7	numerically	numerically	ADV
ddj-47	1010	8	than	than	ADP
ddj-47	1010	9	the	the	DET
ddj-47	1010	10	model	model	NOUN
ddj-47	1010	11	discussed	discuss	VERB
ddj-47	1010	12	and	and	CCONJ
ddj-47	1010	13	it	it	PRON
ddj-47	1010	14	would	would	AUX
ddj-47	1010	15	require	require	VERB
ddj-47	1010	16	a	a	DET
ddj-47	1010	17	considerable	considerable	ADJ
ddj-47	1010	18	amount	amount	NOUN
ddj-47	1010	19	of	of	ADP
ddj-47	1010	20	work	work	NOUN
ddj-47	1010	21	to	to	PART
ddj-47	1010	22	test	test	VERB
ddj-47	1010	23	it	it	PRON
ddj-47	1010	24	.	.	PUNCT
ddj-47	1011	1	in	in	ADP
ddj-47	1011	2	particular	particular	ADJ
ddj-47	1011	3	,	,	PUNCT
ddj-47	1011	4	the	the	DET
ddj-47	1011	5	three	three	NUM
ddj-47	1011	6	universal	universal	ADJ
ddj-47	1011	7	potential	potential	ADJ
ddj-47	1011	8	functions	function	NOUN
ddj-47	1011	9	involve	involve	VERB
ddj-47	1011	10	free	free	ADJ
ddj-47	1011	11	parameters	parameter	NOUN
ddj-47	1011	12	even	even	ADV
ddj-47	1011	13	if	if	SCONJ
ddj-47	1011	14	one	one	PRON
ddj-47	1011	15	makes	make	VERB
ddj-47	1011	16	simplifying	simplify	VERB
ddj-47	1011	17	assumptions	assumption	NOUN
ddj-47	1011	18	about	about	ADP
ddj-47	1011	19	their	their	PRON
ddj-47	1011	20	functional	functional	ADJ
ddj-47	1011	21	form	form	NOUN
ddj-47	1011	22	(	(	PUNCT
ddj-47	1011	23	say	say	VERB
ddj-47	1011	24	simple	simple	ADJ
ddj-47	1011	25	behavior	behavior	NOUN
ddj-47	1011	26	under	under	ADP
ddj-47	1011	27	scaling	scaling	NOUN
ddj-47	1011	28	)	)	PUNCT
ddj-47	1011	29	.	.	PUNCT
ddj-47	1012	1	5.4	5.4	NUM
ddj-47	1012	2	could	could	AUX
ddj-47	1012	3	one	one	NUM
ddj-47	1012	4	regard	regard	VERB
ddj-47	1012	5	amino	amino	NOUN
ddj-47	1012	6	-	-	PUNCT
ddj-47	1012	7	acids	acid	NOUN
ddj-47	1012	8	and	and	CCONJ
ddj-47	1012	9	dnas	dna	NOUN
ddj-47	1012	10	of	of	ADP
ddj-47	1012	11	given	give	VERB
ddj-47	1012	12	type	type	NOUN
ddj-47	1012	13	as	as	ADP
ddj-47	1012	14	analog	analog	NOUN
ddj-47	1012	15	of	of	ADP
ddj-47	1012	16	species	specie	NOUN
ddj-47	1012	17	?	?	PUNCT
ddj-47	1013	1	an	an	DET
ddj-47	1013	2	interesting	interesting	ADJ
ddj-47	1013	3	idea	idea	NOUN
ddj-47	1013	4	raised	raise	VERB
ddj-47	1013	5	by	by	ADP
ddj-47	1013	6	the	the	DET
ddj-47	1013	7	work	work	NOUN
ddj-47	1013	8	with	with	ADP
ddj-47	1013	9	the	the	DET
ddj-47	1013	10	model	model	NOUN
ddj-47	1013	11	for	for	ADP
ddj-47	1013	12	protein	protein	NOUN
ddj-47	1013	13	folding	folding	NOUN
ddj-47	1013	14	is	be	AUX
ddj-47	1013	15	that	that	SCONJ
ddj-47	1013	16	the	the	DET
ddj-47	1013	17	magnetic	magnetic	ADJ
ddj-47	1013	18	bodies	body	NOUN
ddj-47	1013	19	amino	amino	ADJ
ddj-47	1013	20	-	-	PUNCT
ddj-47	1013	21	acids	acid	NOUN
ddj-47	1013	22	or	or	CCONJ
ddj-47	1013	23	dna	dna	NOUN
ddj-47	1013	24	codon	codon	NOUN
ddj-47	1013	25	of	of	ADP
ddj-47	1013	26	a	a	DET
ddj-47	1013	27	given	give	VERB
ddj-47	1013	28	type	type	NOUN
ddj-47	1013	29	could	could	AUX
ddj-47	1013	30	behave	behave	VERB
ddj-47	1013	31	like	like	ADP
ddj-47	1013	32	single	single	ADJ
ddj-47	1013	33	phase	phase	NOUN
ddj-47	1013	34	on	on	ADP
ddj-47	1013	35	their	their	PRON
ddj-47	1013	36	respective	respective	ADJ
ddj-47	1013	37	page	page	NOUN
ddj-47	1013	38	of	of	ADP
ddj-47	1013	39	the	the	DET
ddj-47	1013	40	book	book	NOUN
ddj-47	1013	41	so	so	SCONJ
ddj-47	1013	42	that	that	SCONJ
ddj-47	1013	43	the	the	DET
ddj-47	1013	44	mutual	mutual	ADJ
ddj-47	1013	45	interactions	interaction	NOUN
ddj-47	1013	46	of	of	ADP
ddj-47	1013	47	their	their	PRON
ddj-47	1013	48	magnetic	magnetic	ADJ
ddj-47	1013	49	bodies	body	NOUN
ddj-47	1013	50	could	could	AUX
ddj-47	1013	51	affect	affect	VERB
ddj-47	1013	52	considerably	considerably	ADV
ddj-47	1013	53	the	the	DET
ddj-47	1013	54	behavior	behavior	NOUN
ddj-47	1013	55	of	of	ADP
ddj-47	1013	56	this	this	DET
ddj-47	1013	57	phase	phase	NOUN
ddj-47	1013	58	to	to	ADP
ddj-47	1013	59	first	first	ADJ
ddj-47	1013	60	order	order	NOUN
ddj-47	1013	61	although	although	SCONJ
ddj-47	1013	62	amino	amino	NOUN
ddj-47	1013	63	-	-	PUNCT
ddj-47	1013	64	acids	acid	NOUN
ddj-47	1013	65	themselves	themselves	PRON
ddj-47	1013	66	are	be	AUX
ddj-47	1013	67	at	at	ADP
ddj-47	1013	68	different	different	ADJ
ddj-47	1013	69	positions	position	NOUN
ddj-47	1013	70	and	and	CCONJ
ddj-47	1013	71	one	one	PRON
ddj-47	1013	72	might	might	AUX
ddj-47	1013	73	expect	expect	VERB
ddj-47	1013	74	only	only	ADJ
ddj-47	1013	75	small	small	ADJ
ddj-47	1013	76	correlations	correlation	NOUN
ddj-47	1013	77	between	between	ADP
ddj-47	1013	78	their	their	PRON
ddj-47	1013	79	motions	motion	NOUN
ddj-47	1013	80	.	.	PUNCT
ddj-47	1014	1	whether	whether	SCONJ
ddj-47	1014	2	the	the	DET
ddj-47	1014	3	dynamics	dynamic	NOUN
ddj-47	1014	4	of	of	ADP
ddj-47	1014	5	amino	amino	NOUN
ddj-47	1014	6	-	-	PUNCT
ddj-47	1014	7	acids	acid	NOUN
ddj-47	1014	8	of	of	ADP
ddj-47	1014	9	given	give	VERB
ddj-47	1014	10	type	type	NOUN
ddj-47	1014	11	in	in	ADP
ddj-47	1014	12	protein	protein	NOUN
ddj-47	1014	13	folding	folding	NOUN
ddj-47	1014	14	are	be	AUX
ddj-47	1014	15	strongly	strongly	ADV
ddj-47	1014	16	correlated	correlate	VERB
ddj-47	1014	17	could	could	AUX
ddj-47	1014	18	be	be	AUX
ddj-47	1014	19	tested	test	VERB
ddj-47	1014	20	.	.	PUNCT
ddj-47	1015	1	in	in	ADP
ddj-47	1015	2	certain	certain	ADJ
ddj-47	1015	3	sense	sense	NOUN
ddj-47	1015	4	one	one	PRON
ddj-47	1015	5	could	could	AUX
ddj-47	1015	6	speak	speak	VERB
ddj-47	1015	7	of	of	ADP
ddj-47	1015	8	single	single	ADJ
ddj-47	1015	9	species	specie	NOUN
ddj-47	1015	10	formed	form	VERB
ddj-47	1015	11	by	by	ADP
ddj-47	1015	12	amino	amino	NOUN
ddj-47	1015	13	-	-	PUNCT
ddj-47	1015	14	acids	acid	NOUN
ddj-47	1015	15	of	of	ADP
ddj-47	1015	16	given	give	VERB
ddj-47	1015	17	type	type	NOUN
ddj-47	1015	18	and	and	CCONJ
ddj-47	1015	19	folding	folding	NOUN
ddj-47	1015	20	as	as	ADV
ddj-47	1015	21	long	long	ADJ
ddj-47	1015	22	range	range	NOUN
ddj-47	1015	23	interaction	interaction	NOUN
ddj-47	1015	24	could	could	AUX
ddj-47	1015	25	be	be	AUX
ddj-47	1015	26	seen	see	VERB
ddj-47	1015	27	as	as	ADP
ddj-47	1015	28	an	an	DET
ddj-47	1015	29	outcome	outcome	NOUN
ddj-47	1015	30	of	of	ADP
ddj-47	1015	31	self	self	NOUN
ddj-47	1015	32	-	-	PUNCT
ddj-47	1015	33	organizing	organize	VERB
ddj-47	1015	34	interaction	interaction	NOUN
ddj-47	1015	35	between	between	ADP
ddj-47	1015	36	members	member	NOUN
ddj-47	1015	37	of	of	ADP
ddj-47	1015	38	various	various	ADJ
ddj-47	1015	39	species	specie	NOUN
ddj-47	1015	40	and	and	CCONJ
ddj-47	1015	41	between	between	ADP
ddj-47	1015	42	species	specie	NOUN
ddj-47	1015	43	themselves	themselves	PRON
ddj-47	1015	44	plus	plus	CCONJ
ddj-47	1015	45	short	short	ADJ
ddj-47	1015	46	range	range	NOUN
ddj-47	1015	47	constraints	constraint	NOUN
ddj-47	1015	48	due	due	ADP
ddj-47	1015	49	to	to	ADP
ddj-47	1015	50	the	the	DET
ddj-47	1015	51	fact	fact	NOUN
ddj-47	1015	52	that	that	SCONJ
ddj-47	1015	53	amino	amino	ADJ
ddj-47	1015	54	-	-	PUNCT
ddj-47	1015	55	acids	acid	NOUN
ddj-47	1015	56	form	form	NOUN
ddj-47	1015	57	a	a	DET
ddj-47	1015	58	sequence	sequence	NOUN
ddj-47	1015	59	.	.	PUNCT
ddj-47	1016	1	the	the	DET
ddj-47	1016	2	question	question	NOUN
ddj-47	1016	3	applies	apply	VERB
ddj-47	1016	4	to	to	ADP
ddj-47	1016	5	dna	dna	PROPN
ddj-47	1016	6	and	and	CCONJ
ddj-47	1016	7	rna	rna	NOUN
ddj-47	1016	8	codons	codon	NOUN
ddj-47	1016	9	and	and	CCONJ
ddj-47	1016	10	also	also	ADV
ddj-47	1016	11	to	to	ADP
ddj-47	1016	12	larger	large	ADJ
ddj-47	1016	13	units	unit	NOUN
ddj-47	1016	14	such	such	ADJ
ddj-47	1016	15	as	as	ADP
ddj-47	1016	16	genes	gene	NOUN
ddj-47	1016	17	formed	form	VERB
ddj-47	1016	18	to	to	PART
ddj-47	1016	19	which	which	PRON
ddj-47	1016	20	one	one	PRON
ddj-47	1016	21	could	could	AUX
ddj-47	1016	22	assign	assign	VERB
ddj-47	1016	23	their	their	PRON
ddj-47	1016	24	own	own	ADJ
ddj-47	1016	25	page	page	NOUN
ddj-47	1016	26	of	of	ADP
ddj-47	1016	27	the	the	DET
ddj-47	1016	28	book	book	NOUN
ddj-47	1016	29	.	.	PUNCT
ddj-47	1017	1	water	water	NOUN
ddj-47	1017	2	would	would	AUX
ddj-47	1017	3	represent	represent	VERB
ddj-47	1017	4	the	the	DET
ddj-47	1017	5	page	page	NOUN
ddj-47	1017	6	to	to	PART
ddj-47	1017	7	which	which	PRON
ddj-47	1017	8	all	all	DET
ddj-47	1017	9	dnas	dna	NOUN
ddj-47	1017	10	can	can	AUX
ddj-47	1017	11	send	send	VERB
ddj-47	1017	12	flux	flux	NOUN
ddj-47	1017	13	tubes	tube	NOUN
ddj-47	1017	14	.	.	PUNCT
ddj-47	1018	1	even	even	ADV
ddj-47	1018	2	the	the	DET
ddj-47	1018	3	notion	notion	NOUN
ddj-47	1018	4	of	of	ADP
ddj-47	1018	5	biological	biological	ADJ
ddj-47	1018	6	species	specie	NOUN
ddj-47	1018	7	could	could	AUX
ddj-47	1018	8	involve	involve	VERB
ddj-47	1018	9	common	common	ADJ
ddj-47	1018	10	dark	dark	ADJ
ddj-47	1018	11	space	space	NOUN
ddj-47	1018	12	-	-	PUNCT
ddj-47	1018	13	time	time	NOUN
ddj-47	1018	14	sheet(s	sheet(s	NOUN
ddj-47	1018	15	)	)	PUNCT
ddj-47	1018	16	where	where	SCONJ
ddj-47	1018	17	the	the	DET
ddj-47	1018	18	magnetic	magnetic	ADJ
ddj-47	1018	19	bodies	body	NOUN
ddj-47	1018	20	of	of	ADP
ddj-47	1018	21	the	the	DET
ddj-47	1018	22	members	member	NOUN
ddj-47	1018	23	of	of	ADP
ddj-47	1018	24	species	specie	NOUN
ddj-47	1018	25	are	be	AUX
ddj-47	1018	26	and	and	CCONJ
ddj-47	1018	27	interact	interact	VERB
ddj-47	1018	28	making	make	VERB
ddj-47	1018	29	the	the	DET
ddj-47	1018	30	members	member	NOUN
ddj-47	1018	31	of	of	ADP
ddj-47	1018	32	species	specie	NOUN
ddj-47	1018	33	to	to	PART
ddj-47	1018	34	behave	behave	VERB
ddj-47	1018	35	like	like	ADP
ddj-47	1018	36	single	single	ADJ
ddj-47	1018	37	coherent	coherent	ADJ
ddj-47	1018	38	unit	unit	NOUN
ddj-47	1018	39	.	.	PUNCT
ddj-47	1019	1	references	reference	NOUN
ddj-47	1019	2	biology	biology	NOUN
ddj-47	1019	3	[	[	X
ddj-47	1019	4	1	1	X
ddj-47	1019	5	]	]	PUNCT
ddj-47	1019	6	alpha	alpha	NOUN
ddj-47	1019	7	helix	helix	NOUN
ddj-47	1019	8	.	.	PUNCT
ddj-47	1020	1	http://en.wikipedia.org/wiki/alpha_helix	http://en.wikipedia.org/wiki/alpha_helix	NOUN
ddj-47	1020	2	.	.	PUNCT
ddj-47	1021	1	[	[	X
ddj-47	1021	2	2	2	X
ddj-47	1021	3	]	]	PUNCT
ddj-47	1021	4	asparagine	asparagine	NOUN
ddj-47	1021	5	synthetase	synthetase	NOUN
ddj-47	1021	6	.	.	PUNCT
ddj-47	1022	1	http://www.pdb.org/pdb/files/11as.pdb	http://www.pdb.org/pdb/files/11as.pdb	PROPN
ddj-47	1022	2	.	.	PUNCT
ddj-47	1023	1	[	[	X
ddj-47	1023	2	3	3	NUM
ddj-47	1023	3	]	]	X
ddj-47	1023	4	bamhi	bamhi	VERB
ddj-47	1023	5	.	.	PUNCT
ddj-47	1024	1	http://www.rcsb.org/pdb/files/1bam.pdb	http://www.rcsb.org/pdb/files/1bam.pdb	X
ddj-47	1024	2	.	.	PUNCT
ddj-47	1025	1	[	[	X
ddj-47	1025	2	4	4	NUM
ddj-47	1025	3	]	]	X
ddj-47	1025	4	bamhi	bamhi	VERB
ddj-47	1025	5	.	.	PUNCT
ddj-47	1026	1	http://rebase.neb.com/cgi-bin/seqsget?x55285	http://rebase.neb.com/cgi-bin/seqsget?x55285	X
ddj-47	1026	2	.	.	PUNCT
ddj-47	1027	1	[	[	X
ddj-47	1027	2	5	5	NUM
ddj-47	1027	3	]	]	X
ddj-47	1027	4	beta	beta	ADJ
ddj-47	1027	5	sheet	sheet	NOUN
ddj-47	1027	6	.	.	PUNCT
ddj-47	1027	7	http://en.wikipedia.org/wiki/beta_sheet	http://en.wikipedia.org/wiki/beta_sheet	NOUN
ddj-47	1027	8	.	.	PUNCT
ddj-47	1028	1	[	[	X
ddj-47	1028	2	6	6	NUM
ddj-47	1028	3	]	]	PUNCT
ddj-47	1028	4	collagen	collagen	NOUN
ddj-47	1028	5	.	.	PUNCT
ddj-47	1029	1	http://en.wikipedia.org/wiki/collagen	http://en.wikipedia.org/wiki/collagen	X
ddj-47	1029	2	.	.	PUNCT
ddj-47	1030	1	[	[	X
ddj-47	1030	2	7	7	X
ddj-47	1030	3	]	]	X
ddj-47	1030	4	glutathione	glutathione	NOUN
ddj-47	1030	5	s	s	NOUN
ddj-47	1030	6	-	-	NOUN
ddj-47	1030	7	transferase	transferase	NOUN
ddj-47	1030	8	.	.	PUNCT
ddj-47	1031	1	http://www.pdb.org/pdb/files/14gs.pdb	http://www.pdb.org/pdb/files/14gs.pdb	PROPN
ddj-47	1031	2	.	.	PUNCT
ddj-47	1032	1	[	[	X
ddj-47	1032	2	8	8	NUM
ddj-47	1032	3	]	]	X
ddj-47	1032	4	hydrolase(o	hydrolase(o	NOUN
ddj-47	1032	5	-	-	NOUN
ddj-47	1032	6	glycosyl	glycosyl	NOUN
ddj-47	1032	7	)	)	PUNCT
ddj-47	1032	8	.	.	PUNCT
ddj-47	1033	1	http://www.pdb.org/pdb/files/107l.pdb	http://www.pdb.org/pdb/files/107l.pdb	ADJ
ddj-47	1033	2	.	.	PUNCT
ddj-47	1034	1	[	[	X
ddj-47	1034	2	9	9	NUM
ddj-47	1034	3	]	]	X
ddj-47	1034	4	phospholipids	phospholipid	NOUN
ddj-47	1034	5	.	.	PUNCT
ddj-47	1035	1	http://en.wikipedia.org/wiki/phospholipids	http://en.wikipedia.org/wiki/phospholipid	NOUN
ddj-47	1035	2	.	.	PUNCT
ddj-47	1036	1	issn	issn	PROPN
ddj-47	1036	2	:	:	PUNCT
ddj-47	1036	3	2159	2159	NUM
ddj-47	1036	4	-	-	SYM
ddj-47	1036	5	0465	0465	NUM
ddj-47	1036	6	dna	dna	PROPN
ddj-47	1036	7	decipher	decipher	PROPN
ddj-47	1036	8	journal	journal	PROPN
ddj-47	1036	9	june	june	PROPN
ddj-47	1036	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	1036	11	published	publish	VERB
ddj-47	1036	12	by	by	ADP
ddj-47	1036	13	quantumdream	quantumdream	PROPN
ddj-47	1036	14	,	,	PUNCT
ddj-47	1036	15	inc	inc	PROPN
ddj-47	1036	16	.	.	PROPN
ddj-47	1036	17	http://en.wikipedia.org/wiki/alpha_helix	http://en.wikipedia.org/wiki/alpha_helix	NOUN
ddj-47	1036	18	http://www.pdb.org/pdb/files/11as.pdb	http://www.pdb.org/pdb/files/11as.pdb	VERB
ddj-47	1036	19	http://www.rcsb.org/pdb/files/1bam.pdb	http://www.rcsb.org/pdb/files/1bam.pdb	X
ddj-47	1036	20	http://rebase.neb.com/cgi-bin/seqsget?x55285	http://rebase.neb.com/cgi-bin/seqsget?x55285	NUM
ddj-47	1036	21	http://en.wikipedia.org/wiki/beta_sheet	http://en.wikipedia.org/wiki/beta_sheet	NOUN
ddj-47	1036	22	http://en.wikipedia.org/wiki/collagen	http://en.wikipedia.org/wiki/collagen	PROPN
ddj-47	1036	23	http://www.pdb.org/pdb/files/14gs.pdb	http://www.pdb.org/pdb/files/14gs.pdb	PROPN
ddj-47	1036	24	http://www.pdb.org/pdb/files/107l.pdb	http://www.pdb.org/pdb/files/107l.pdb	PROPN
ddj-47	1036	25	http://en.wikipedia.org/wiki/phospholipids	http://en.wikipedia.org/wiki/phospholipid	NOUN
ddj-47	1036	26	dna	dna	PROPN
ddj-47	1036	27	decipher	decipher	PROPN
ddj-47	1036	28	journal	journal	NOUN
ddj-47	1037	1	|	|	ADV
ddj-47	1037	2	may	may	AUX
ddj-47	1037	3	2013	2013	NUM
ddj-47	1037	4	|	|	ADV
ddj-47	1037	5	volume	volume	NOUN
ddj-47	1037	6	3	3	NUM
ddj-47	1037	7	|	|	NOUN
ddj-47	1037	8	issue	issue	VERB
ddj-47	1037	9	1	1	NUM
ddj-47	1037	10	|	|	ADV
ddj-47	1037	11	pp	pp	ADJ
ddj-47	1037	12	.	.	PUNCT
ddj-47	1038	1	58	58	NUM
ddj-47	1038	2	-	-	SYM
ddj-47	1038	3	88	88	NUM
ddj-47	1038	4	88	88	NUM
ddj-47	1038	5	pitkänen	pitkänen	NOUN
ddj-47	1038	6	,	,	PUNCT
ddj-47	1038	7	m.	m.	NOUN
ddj-47	1038	8	,	,	PUNCT
ddj-47	1038	9	a	a	DET
ddj-47	1038	10	model	model	NOUN
ddj-47	1038	11	for	for	ADP
ddj-47	1038	12	protein	protein	NOUN
ddj-47	1038	13	folding	folding	NOUN
ddj-47	1038	14	and	and	CCONJ
ddj-47	1038	15	biocatalysis	biocatalysis	NOUN
ddj-47	1038	16	[	[	X
ddj-47	1038	17	10	10	NUM
ddj-47	1038	18	]	]	X
ddj-47	1038	19	secondary	secondary	ADJ
ddj-47	1038	20	structures	structure	NOUN
ddj-47	1038	21	.	.	PUNCT
ddj-47	1039	1	http://en.wikipedia.org/wiki/secondary_structure	http://en.wikipedia.org/wiki/secondary_structure	NOUN
ddj-47	1039	2	.	.	PUNCT
ddj-47	1040	1	[	[	X
ddj-47	1040	2	11	11	NUM
ddj-47	1040	3	]	]	PUNCT
ddj-47	1040	4	xylose	xylose	PROPN
ddj-47	1040	5	isomerase	isomerase	NOUN
ddj-47	1040	6	.	.	PUNCT
ddj-47	1041	1	http://www.pdb.org/pdb/files/1a0c.pdb	http://www.pdb.org/pdb/files/1a0c.pdb	ADJ
ddj-47	1041	2	.	.	PUNCT
ddj-47	1042	1	[	[	X
ddj-47	1042	2	12	12	NUM
ddj-47	1042	3	]	]	PUNCT
ddj-47	1042	4	m.	m.	NOUN
ddj-47	1042	5	buchanan	buchanan	PROPN
ddj-47	1042	6	.	.	PUNCT
ddj-47	1042	7	shape	shape	NOUN
ddj-47	1042	8	is	be	AUX
ddj-47	1042	9	all	all	PRON
ddj-47	1042	10	.	.	PUNCT
ddj-47	1043	1	new	new	ADJ
ddj-47	1043	2	scientist	scientist	NOUN
ddj-47	1043	3	,	,	PUNCT
ddj-47	1043	4	2157	2157	NUM
ddj-47	1043	5	,	,	PUNCT
ddj-47	1043	6	1998	1998	NUM
ddj-47	1043	7	.	.	PUNCT
ddj-47	1044	1	[	[	X
ddj-47	1044	2	13	13	NUM
ddj-47	1044	3	]	]	PUNCT
ddj-47	1044	4	t.	t.	PROPN
ddj-47	1044	5	e.	e.	PROPN
ddj-47	1044	6	creighton	creighton	PROPN
ddj-47	1044	7	.	.	PUNCT
ddj-47	1045	1	proteins	protein	NOUN
ddj-47	1045	2	:	:	PUNCT
ddj-47	1045	3	structures	structure	NOUN
ddj-47	1045	4	and	and	CCONJ
ddj-47	1045	5	molecular	molecular	ADJ
ddj-47	1045	6	properties	property	NOUN
ddj-47	1045	7	.	.	PUNCT
ddj-47	1046	1	freeman	freeman	PROPN
ddj-47	1046	2	,	,	PUNCT
ddj-47	1046	3	new	new	PROPN
ddj-47	1046	4	york	york	PROPN
ddj-47	1046	5	,	,	PUNCT
ddj-47	1046	6	1993	1993	NUM
ddj-47	1046	7	.	.	PUNCT
ddj-47	1047	1	[	[	X
ddj-47	1047	2	14	14	NUM
ddj-47	1047	3	]	]	X
ddj-47	1047	4	s.	s.	PROPN
ddj-47	1047	5	rackovsky	rackovsky	PROPN
ddj-47	1047	6	.	.	PUNCT
ddj-47	1048	1	on	on	ADP
ddj-47	1048	2	the	the	DET
ddj-47	1048	3	nature	nature	NOUN
ddj-47	1048	4	of	of	ADP
ddj-47	1048	5	the	the	DET
ddj-47	1048	6	protein	protein	NOUN
ddj-47	1048	7	folding	fold	VERB
ddj-47	1048	8	code	code	NOUN
ddj-47	1048	9	.	.	PUNCT
ddj-47	1049	1	proc	proc	PROPN
ddj-47	1049	2	.	.	PUNCT
ddj-47	1050	1	natl	natl	PROPN
ddj-47	1050	2	.	.	PUNCT
ddj-47	1051	1	acad	acad	PROPN
ddj-47	1051	2	.	.	PUNCT
ddj-47	1052	1	sci	sci	PROPN
ddj-47	1052	2	.	.	PROPN
ddj-47	1052	3	usa	usa	PROPN
ddj-47	1052	4	.	.	PROPN
ddj-47	1052	5	http	http	PROPN
ddj-47	1052	6	:	:	PUNCT
ddj-47	1052	7	//	//	NUM
ddj-47	1052	8	www	www	PROPN
ddj-47	1052	9	.	.	PROPN
ddj-47	1053	1	pubmedcentral	pubmedcentral	PROPN
ddj-47	1053	2	.	.	PUNCT
ddj-47	1054	1	nih	nih	PROPN
ddj-47	1054	2	.	.	PROPN
ddj-47	1054	3	gov/	gov/	PROPN
ddj-47	1054	4	articlerender	articlerender	PROPN
ddj-47	1054	5	.	.	PUNCT
ddj-47	1055	1	fcgi	fcgi	PROPN
ddj-47	1055	2	?	?	PUNCT
ddj-47	1056	1	artid=	artid=	PROPN
ddj-47	1056	2	45720	45720	NUM
ddj-47	1056	3	,	,	PUNCT
ddj-47	1056	4	90(2	90(2	NUM
ddj-47	1056	5	)	)	PUNCT
ddj-47	1056	6	,	,	PUNCT
ddj-47	1056	7	january	january	PROPN
ddj-47	1056	8	1993	1993	NUM
ddj-47	1056	9	.	.	PUNCT
ddj-47	1057	1	books	book	NOUN
ddj-47	1057	2	related	relate	VERB
ddj-47	1057	3	to	to	ADP
ddj-47	1057	4	tgd	tgd	PROPN
ddj-47	1057	5	[	[	X
ddj-47	1057	6	15	15	NUM
ddj-47	1057	7	]	]	X
ddj-47	1057	8	m.	m.	NOUN
ddj-47	1057	9	pitkänen	pitkänen	PROPN
ddj-47	1057	10	.	.	PUNCT
ddj-47	1057	11	bio	bio	PROPN
ddj-47	1057	12	-	-	PUNCT
ddj-47	1057	13	systems	system	NOUN
ddj-47	1057	14	as	as	ADP
ddj-47	1057	15	super	super	NOUN
ddj-47	1057	16	-	-	NOUN
ddj-47	1057	17	conductors	conductor	NOUN
ddj-47	1057	18	:	:	PUNCT
ddj-47	1057	19	part	part	NOUN
ddj-47	1057	20	i.	i.	NOUN
ddj-47	1057	21	in	in	ADP
ddj-47	1057	22	quantum	quantum	ADJ
ddj-47	1057	23	hardware	hardware	NOUN
ddj-47	1057	24	of	of	ADP
ddj-47	1057	25	living	living	NOUN
ddj-47	1057	26	matter	matter	NOUN
ddj-47	1057	27	.	.	PUNCT
ddj-47	1058	1	onlinebook	onlinebook	PROPN
ddj-47	1058	2	.	.	PUNCT
ddj-47	1059	1	http://tgdtheory.com/public_html/bioware/bioware.html#superc1	http://tgdtheory.com/public_html/bioware/bioware.html#superc1	PRON
ddj-47	1059	2	,	,	PUNCT
ddj-47	1059	3	2006	2006	NUM
ddj-47	1059	4	.	.	PUNCT
ddj-47	1060	1	[	[	X
ddj-47	1060	2	16	16	NUM
ddj-47	1060	3	]	]	PUNCT
ddj-47	1060	4	m.	m.	NOUN
ddj-47	1060	5	pitkänen	pitkänen	PROPN
ddj-47	1060	6	.	.	PUNCT
ddj-47	1060	7	evolution	evolution	NOUN
ddj-47	1060	8	in	in	ADP
ddj-47	1060	9	many	many	ADJ
ddj-47	1060	10	-	-	PUNCT
ddj-47	1060	11	sheeted	sheet	VERB
ddj-47	1060	12	space	space	NOUN
ddj-47	1060	13	-	-	PUNCT
ddj-47	1060	14	time	time	NOUN
ddj-47	1060	15	.	.	PUNCT
ddj-47	1061	1	in	in	ADP
ddj-47	1061	2	genes	gene	NOUN
ddj-47	1061	3	and	and	CCONJ
ddj-47	1061	4	memes	meme	NOUN
ddj-47	1061	5	.	.	PUNCT
ddj-47	1062	1	onlinebook	onlinebook	NOUN
ddj-47	1062	2	.	.	PUNCT
ddj-47	1063	1	http	http	ADJ
ddj-47	1063	2	:	:	PUNCT
ddj-47	1063	3	//tgdtheory.com	//tgdtheory.com	SYM
ddj-47	1063	4	/	/	SYM
ddj-47	1063	5	public_html	public_html	PROPN
ddj-47	1063	6	/	/	SYM
ddj-47	1063	7	genememe	genememe	NOUN
ddj-47	1063	8	/	/	SYM
ddj-47	1063	9	genememe.html#prebio	genememe.html#prebio	PROPN
ddj-47	1063	10	,	,	PUNCT
ddj-47	1063	11	2006	2006	NUM
ddj-47	1063	12	.	.	PUNCT
ddj-47	1064	1	[	[	X
ddj-47	1064	2	17	17	NUM
ddj-47	1064	3	]	]	PUNCT
ddj-47	1064	4	m.	m.	NOUN
ddj-47	1064	5	pitkänen	pitkänen	PROPN
ddj-47	1064	6	.	.	PUNCT
ddj-47	1064	7	negentropy	negentropy	PROPN
ddj-47	1064	8	maximization	maximization	PROPN
ddj-47	1064	9	principle	principle	NOUN
ddj-47	1064	10	.	.	PUNCT
ddj-47	1065	1	in	in	ADP
ddj-47	1065	2	tgd	tgd	PROPN
ddj-47	1065	3	inspired	inspire	VERB
ddj-47	1065	4	theory	theory	NOUN
ddj-47	1065	5	of	of	ADP
ddj-47	1065	6	consciousness	consciousness	NOUN
ddj-47	1065	7	.	.	PUNCT
ddj-47	1066	1	onlinebook	onlinebook	PROPN
ddj-47	1066	2	.	.	PUNCT
ddj-47	1067	1	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#nmpc	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#nmpc	PROPN
ddj-47	1067	2	,	,	PUNCT
ddj-47	1067	3	2006	2006	NUM
ddj-47	1067	4	.	.	PUNCT
ddj-47	1068	1	[	[	X
ddj-47	1068	2	18	18	NUM
ddj-47	1068	3	]	]	PUNCT
ddj-47	1068	4	m.	m.	NOUN
ddj-47	1068	5	pitkänen	pitkänen	PROPN
ddj-47	1068	6	.	.	PUNCT
ddj-47	1068	7	quantum	quantum	PROPN
ddj-47	1068	8	model	model	NOUN
ddj-47	1068	9	for	for	ADP
ddj-47	1068	10	nerve	nerve	NOUN
ddj-47	1068	11	pulse	pulse	NOUN
ddj-47	1068	12	.	.	PUNCT
ddj-47	1069	1	in	in	ADP
ddj-47	1069	2	tgd	tgd	PROPN
ddj-47	1069	3	and	and	CCONJ
ddj-47	1069	4	eeg	eeg	PROPN
ddj-47	1069	5	.	.	PROPN
ddj-47	1069	6	onlinebook	onlinebook	PROPN
ddj-47	1069	7	.	.	PUNCT
ddj-47	1070	1	http://tgdtheory.com/	http://tgdtheory.com/	NOUN
ddj-47	1070	2	public_html//tgdeeg	public_html//tgdeeg	X
ddj-47	1070	3	/	/	SYM
ddj-47	1070	4	tgdeeg	tgdeeg	NOUN
ddj-47	1070	5	/	/	SYM
ddj-47	1070	6	tgdeeg.html#pulse	tgdeeg.html#pulse	NOUN
ddj-47	1070	7	,	,	PUNCT
ddj-47	1070	8	2006	2006	NUM
ddj-47	1070	9	.	.	PUNCT
ddj-47	1071	1	[	[	X
ddj-47	1071	2	19	19	NUM
ddj-47	1071	3	]	]	PUNCT
ddj-47	1071	4	m.	m.	NOUN
ddj-47	1071	5	pitkänen	pitkänen	PROPN
ddj-47	1071	6	.	.	PUNCT
ddj-47	1071	7	quantum	quantum	PROPN
ddj-47	1071	8	theory	theory	NOUN
ddj-47	1071	9	of	of	ADP
ddj-47	1071	10	self	self	NOUN
ddj-47	1071	11	-	-	PUNCT
ddj-47	1071	12	organization	organization	NOUN
ddj-47	1071	13	.	.	PUNCT
ddj-47	1072	1	in	in	ADP
ddj-47	1072	2	bio	bio	NOUN
ddj-47	1072	3	-	-	NOUN
ddj-47	1072	4	systems	system	NOUN
ddj-47	1072	5	as	as	ADP
ddj-47	1072	6	self	self	NOUN
ddj-47	1072	7	-	-	PUNCT
ddj-47	1072	8	organizing	organize	VERB
ddj-47	1072	9	quantum	quantum	ADJ
ddj-47	1072	10	systems	system	NOUN
ddj-47	1072	11	.	.	PUNCT
ddj-47	1073	1	onlinebook	onlinebook	PROPN
ddj-47	1073	2	.	.	PUNCT
ddj-47	1074	1	http://tgdtheory.com/public_html/bioselforg/bioselforg.html#selforgac	http://tgdtheory.com/public_html/bioselforg/bioselforg.html#selforgac	PROPN
ddj-47	1074	2	,	,	PUNCT
ddj-47	1074	3	2006	2006	NUM
ddj-47	1074	4	.	.	PUNCT
ddj-47	1075	1	[	[	X
ddj-47	1075	2	20	20	NUM
ddj-47	1075	3	]	]	PUNCT
ddj-47	1075	4	m.	m.	NOUN
ddj-47	1075	5	pitkänen	pitkänen	NOUN
ddj-47	1075	6	.	.	PUNCT
ddj-47	1076	1	tgd	tgd	PROPN
ddj-47	1076	2	based	base	VERB
ddj-47	1076	3	model	model	NOUN
ddj-47	1076	4	for	for	ADP
ddj-47	1076	5	obes	obe	NOUN
ddj-47	1076	6	.	.	PUNCT
ddj-47	1077	1	in	in	ADP
ddj-47	1077	2	tgd	tgd	PROPN
ddj-47	1077	3	inspired	inspire	VERB
ddj-47	1077	4	theory	theory	NOUN
ddj-47	1077	5	of	of	ADP
ddj-47	1077	6	consciousness	consciousness	NOUN
ddj-47	1077	7	.	.	PUNCT
ddj-47	1078	1	onlinebook	onlinebook	NOUN
ddj-47	1078	2	.	.	PUNCT
ddj-47	1079	1	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#obe	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#obe	PROPN
ddj-47	1079	2	,	,	PUNCT
ddj-47	1079	3	2006	2006	NUM
ddj-47	1079	4	.	.	PUNCT
ddj-47	1080	1	[	[	X
ddj-47	1080	2	21	21	NUM
ddj-47	1080	3	]	]	PUNCT
ddj-47	1080	4	m.	m.	NOUN
ddj-47	1080	5	pitkänen	pitkänen	NOUN
ddj-47	1080	6	.	.	PUNCT
ddj-47	1081	1	wormhole	wormhole	NOUN
ddj-47	1081	2	magnetic	magnetic	ADJ
ddj-47	1081	3	fields	field	NOUN
ddj-47	1081	4	.	.	PUNCT
ddj-47	1082	1	in	in	ADP
ddj-47	1082	2	quantum	quantum	ADJ
ddj-47	1082	3	hardware	hardware	NOUN
ddj-47	1082	4	of	of	ADP
ddj-47	1082	5	living	living	NOUN
ddj-47	1082	6	matter	matter	NOUN
ddj-47	1082	7	.	.	PUNCT
ddj-47	1083	1	onlinebook	onlinebook	INTJ
ddj-47	1083	2	.	.	PUNCT
ddj-47	1084	1	http	http	ADJ
ddj-47	1084	2	:	:	PUNCT
ddj-47	1084	3	//tgdtheory.com	//tgdtheory.com	SYM
ddj-47	1084	4	/	/	SYM
ddj-47	1084	5	public_html	public_html	PROPN
ddj-47	1084	6	/	/	SYM
ddj-47	1084	7	bioware	bioware	NOUN
ddj-47	1084	8	/	/	SYM
ddj-47	1084	9	bioware.html#wormc	bioware.html#wormc	PROPN
ddj-47	1084	10	,	,	PUNCT
ddj-47	1084	11	2006	2006	NUM
ddj-47	1084	12	.	.	PUNCT
ddj-47	1085	1	issn	issn	PROPN
ddj-47	1085	2	:	:	PUNCT
ddj-47	1085	3	2159	2159	NUM
ddj-47	1085	4	-	-	SYM
ddj-47	1085	5	0465	0465	NUM
ddj-47	1085	6	dna	dna	PROPN
ddj-47	1085	7	decipher	decipher	PROPN
ddj-47	1085	8	journal	journal	PROPN
ddj-47	1085	9	june	june	PROPN
ddj-47	1085	10	www.dnadecipher.com	www.dnadecipher.com	PROPN
ddj-47	1085	11	published	publish	VERB
ddj-47	1085	12	by	by	ADP
ddj-47	1085	13	quantumdream	quantumdream	PROPN
ddj-47	1085	14	,	,	PUNCT
ddj-47	1085	15	inc	inc	PROPN
ddj-47	1085	16	.	.	PROPN
ddj-47	1085	17	http://en.wikipedia.org/wiki/secondary_structure	http://en.wikipedia.org/wiki/secondary_structure	PROPN
ddj-47	1085	18	http://www.pdb.org/pdb/files/1a0c.pdb	http://www.pdb.org/pdb/files/1a0c.pdb	ADP
ddj-47	1085	19	http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=45720	http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=45720	NOUN
ddj-47	1085	20	http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=45720	http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=45720	NOUN
ddj-47	1085	21	http://tgdtheory.com/public_html/bioware/bioware.html#superc1	http://tgdtheory.com/public_html/bioware/bioware.html#superc1	ADV
ddj-47	1085	22	http://tgdtheory.com/public_html/genememe/genememe.html#prebio	http://tgdtheory.com/public_html/genememe/genememe.html#prebio	ADV
ddj-47	1085	23	http://tgdtheory.com/public_html/genememe/genememe.html#prebio	http://tgdtheory.com/public_html/genememe/genememe.html#prebio	SCONJ
ddj-47	1085	24	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#nmpc	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#nmpc	PROPN
ddj-47	1085	25	http://tgdtheory.com/public_html//tgdeeg/tgdeeg/tgdeeg.html#pulse	http://tgdtheory.com/public_html//tgdeeg/tgdeeg/tgdeeg.html#pulse	ADJ
ddj-47	1085	26	http://tgdtheory.com/public_html//tgdeeg/tgdeeg/tgdeeg.html#pulse	http://tgdtheory.com/public_html//tgdeeg/tgdeeg/tgdeeg.html#pulse	ADJ
ddj-47	1085	27	http://tgdtheory.com/public_html/bioselforg/bioselforg.html#selforgac	http://tgdtheory.com/public_html/bioselforg/bioselforg.html#selforgac	PROPN
ddj-47	1085	28	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#obe	http://tgdtheory.com/public_html/tgdconsc/tgdconsc.html#obe	PROPN
ddj-47	1085	29	http://tgdtheory.com/public_html/bioware/bioware.html#wormc	http://tgdtheory.com/public_html/bioware/bioware.html#wormc	PROPN
ddj-47	1085	30	http://tgdtheory.com/public_html/bioware/bioware.html#wormc	http://tgdtheory.com/public_html/bioware/bioware.html#wormc	PROPN
ddj-47	1085	31	introduction	introduction	NOUN
ddj-47	1085	32	flux	flux	NOUN
ddj-47	1085	33	tubes	tube	NOUN
ddj-47	1085	34	as	as	ADP
ddj-47	1085	35	correlates	correlate	NOUN
ddj-47	1085	36	of	of	ADP
ddj-47	1085	37	directed	direct	VERB
ddj-47	1085	38	attention	attention	NOUN
ddj-47	1085	39	at	at	ADP
ddj-47	1085	40	molecular	molecular	ADJ
ddj-47	1085	41	level	level	NOUN
ddj-47	1085	42	the	the	DET
ddj-47	1085	43	model	model	NOUN
ddj-47	1085	44	of	of	ADP
ddj-47	1085	45	folding	fold	VERB
ddj-47	1085	46	code	code	NOUN
ddj-47	1085	47	based	base	VERB
ddj-47	1085	48	on	on	ADP
ddj-47	1085	49	flux	flux	NOUN
ddj-47	1085	50	tube	tube	NOUN
ddj-47	1085	51	connections	connection	NOUN
ddj-47	1085	52	between	between	ADP
ddj-47	1085	53	amino	amino	NOUN
ddj-47	1085	54	-	-	PUNCT
ddj-47	1085	55	acids	acid	NOUN
ddj-47	1085	56	what	what	PRON
ddj-47	1085	57	kind	kind	NOUN
ddj-47	1085	58	of	of	ADP
ddj-47	1085	59	atoms	atom	NOUN
ddj-47	1085	60	can	can	AUX
ddj-47	1085	61	be	be	AUX
ddj-47	1085	62	connected	connect	VERB
ddj-47	1085	63	by	by	ADP
ddj-47	1085	64	flux	flux	NOUN
ddj-47	1085	65	tubes	tube	NOUN
ddj-47	1085	66	?	?	PUNCT
ddj-47	1086	1	color	color	NOUN
ddj-47	1086	2	inheritance	inheritance	NOUN
ddj-47	1086	3	by	by	ADP
ddj-47	1086	4	a	a	DET
ddj-47	1086	5	reconnection	reconnection	NOUN
ddj-47	1086	6	of	of	ADP
ddj-47	1086	7	flux	flux	NOUN
ddj-47	1086	8	tubes	tube	NOUN
ddj-47	1086	9	folding	fold	VERB
ddj-47	1086	10	code	code	PROPN
ddj-47	1086	11	quantitative	quantitative	ADJ
ddj-47	1086	12	model	model	NOUN
ddj-47	1086	13	a	a	DET
ddj-47	1086	14	model	model	NOUN
ddj-47	1086	15	for	for	ADP
ddj-47	1086	16	protein	protein	NOUN
ddj-47	1086	17	folding	folding	NOUN
ddj-47	1086	18	based	base	VERB
ddj-47	1086	19	on	on	ADP
ddj-47	1086	20	flux	flux	NOUN
ddj-47	1086	21	tubes	tube	NOUN
ddj-47	1086	22	between	between	ADP
ddj-47	1086	23	amino	amino	NOUN
ddj-47	1086	24	-	-	PUNCT
ddj-47	1086	25	acids	acid	NOUN
ddj-47	1086	26	and	and	CCONJ
ddj-47	1086	27	water	water	NOUN
ddj-47	1086	28	molecules	molecule	NOUN
ddj-47	1086	29	a	a	DET
ddj-47	1086	30	model	model	NOUN
ddj-47	1086	31	for	for	ADP
ddj-47	1086	32	flux	flux	PROPN
ddj-47	1086	33	tubes	tube	NOUN
ddj-47	1086	34	flux	flux	PROPN
ddj-47	1086	35	tubes	tube	NOUN
ddj-47	1086	36	as	as	ADP
ddj-47	1086	37	a	a	DET
ddj-47	1086	38	correlates	correlate	NOUN
ddj-47	1086	39	for	for	ADP
ddj-47	1086	40	directed	direct	VERB
ddj-47	1086	41	attention	attention	NOUN
ddj-47	1086	42	does	do	AUX
ddj-47	1086	43	directed	direct	VERB
ddj-47	1086	44	attention	attention	NOUN
ddj-47	1086	45	generate	generate	NOUN
ddj-47	1086	46	memory	memory	NOUN
ddj-47	1086	47	representations	representation	NOUN
ddj-47	1086	48	and	and	CCONJ
ddj-47	1086	49	tqc	tqc	VERB
ddj-47	1086	50	like	like	ADP
ddj-47	1086	51	processes	process	NOUN
ddj-47	1086	52	realization	realization	NOUN
ddj-47	1086	53	of	of	ADP
ddj-47	1086	54	flux	flux	NOUN
ddj-47	1086	55	tubes	tube	NOUN
ddj-47	1086	56	where	where	SCONJ
ddj-47	1086	57	do	do	AUX
ddj-47	1086	58	flux	flux	NOUN
ddj-47	1086	59	tubes	tube	NOUN
ddj-47	1086	60	begin	begin	VERB
ddj-47	1086	61	from	from	ADP
ddj-47	1086	62	?	?	PUNCT
ddj-47	1087	1	acceptors	acceptor	NOUN
ddj-47	1087	2	as	as	ADP
ddj-47	1087	3	plugs	plug	NOUN
ddj-47	1087	4	and	and	CCONJ
ddj-47	1087	5	donors	donor	NOUN
ddj-47	1087	6	as	as	ADP
ddj-47	1087	7	terminals	terminal	NOUN
ddj-47	1087	8	of	of	ADP
ddj-47	1087	9	flux	flux	NOUN
ddj-47	1087	10	tubes	tube	NOUN
ddj-47	1087	11	?	?	PUNCT
ddj-47	1088	1	flux	flux	PROPN
ddj-47	1088	2	tubes	tube	NOUN
ddj-47	1088	3	and	and	CCONJ
ddj-47	1088	4	dna	dna	PROPN
ddj-47	1088	5	introns	intron	NOUN
ddj-47	1088	6	and	and	CCONJ
ddj-47	1088	7	dna	dna	NOUN
ddj-47	1088	8	-	-	PUNCT
ddj-47	1088	9	protein	protein	NOUN
ddj-47	1088	10	attachment	attachment	NOUN
ddj-47	1088	11	model	model	NOUN
ddj-47	1088	12	for	for	ADP
ddj-47	1088	13	the	the	DET
ddj-47	1088	14	folding	fold	VERB
ddj-47	1088	15	code	code	NOUN
ddj-47	1088	16	based	base	VERB
ddj-47	1088	17	on	on	ADP
ddj-47	1088	18	interactions	interaction	NOUN
ddj-47	1088	19	mediated	mediate	VERB
ddj-47	1088	20	by	by	ADP
ddj-47	1088	21	flux	flux	NOUN
ddj-47	1088	22	tubes	tube	NOUN
ddj-47	1088	23	between	between	ADP
ddj-47	1088	24	aminoacids	aminoacid	NOUN
ddj-47	1088	25	4	4	NUM
ddj-47	1088	26	-	-	SYM
ddj-47	1088	27	d	d	NOUN
ddj-47	1088	28	spin	spin	NOUN
ddj-47	1088	29	glass	glass	NOUN
ddj-47	1088	30	energy	energy	NOUN
ddj-47	1088	31	landscape	landscape	NOUN
ddj-47	1088	32	and	and	CCONJ
ddj-47	1088	33	code	code	NOUN
ddj-47	1088	34	of	of	ADP
ddj-47	1088	35	catalytic	catalytic	ADJ
ddj-47	1088	36	action	action	NOUN
ddj-47	1088	37	flux	flux	NOUN
ddj-47	1088	38	tubes	tube	NOUN
ddj-47	1088	39	and	and	CCONJ
ddj-47	1088	40	amino	amino	NOUN
ddj-47	1088	41	-	-	PUNCT
ddj-47	1088	42	acids	acid	NOUN
ddj-47	1088	43	matter	matter	NOUN
ddj-47	1088	44	antimatter	antimatter	NOUN
ddj-47	1088	45	asymmetry	asymmetry	NOUN
ddj-47	1088	46	at	at	ADP
ddj-47	1088	47	the	the	DET
ddj-47	1088	48	level	level	NOUN
ddj-47	1088	49	of	of	ADP
ddj-47	1088	50	interactions	interaction	NOUN
ddj-47	1088	51	of	of	ADP
ddj-47	1088	52	amino	amino	NOUN
ddj-47	1088	53	-	-	PUNCT
ddj-47	1088	54	acids	acid	NOUN
ddj-47	1088	55	flux	flux	NOUN
ddj-47	1088	56	tubes	tube	NOUN
ddj-47	1088	57	can	can	AUX
ddj-47	1088	58	connect	connect	VERB
ddj-47	1088	59	with	with	ADP
ddj-47	1088	60	all	all	DET
ddj-47	1088	61	electronegative	electronegative	ADJ
ddj-47	1088	62	atoms	atom	NOUN
ddj-47	1088	63	what	what	PRON
ddj-47	1088	64	can	can	AUX
ddj-47	1088	65	one	one	PRON
ddj-47	1088	66	learn	learn	VERB
ddj-47	1088	67	from	from	ADP
ddj-47	1088	68	the	the	DET
ddj-47	1088	69	formation	formation	NOUN
ddj-47	1088	70	of	of	ADP
ddj-47	1088	71	alpha	alpha	ADJ
ddj-47	1088	72	helices	helix	NOUN
ddj-47	1088	73	and	and	CCONJ
ddj-47	1088	74	beta	beta	NOUN
ddj-47	1088	75	sheets	sheet	NOUN
ddj-47	1088	76	?	?	PUNCT
ddj-47	1089	1	interactions	interaction	NOUN
ddj-47	1089	2	of	of	ADP
ddj-47	1089	3	proteins	protein	NOUN
ddj-47	1089	4	with	with	ADP
ddj-47	1089	5	ions	ion	NOUN
ddj-47	1089	6	and	and	CCONJ
ddj-47	1089	7	electrons	electron	NOUN
ddj-47	1089	8	trying	try	VERB
ddj-47	1089	9	to	to	PART
ddj-47	1089	10	identify	identify	VERB
ddj-47	1089	11	the	the	DET
ddj-47	1089	12	folding	fold	VERB
ddj-47	1089	13	code	code	NOUN
ddj-47	1089	14	a	a	DET
ddj-47	1089	15	trial	trial	NOUN
ddj-47	1089	16	for	for	ADP
ddj-47	1089	17	the	the	DET
ddj-47	1089	18	folding	fold	VERB
ddj-47	1089	19	code	code	NOUN
ddj-47	1089	20	y	y	NOUN
ddj-47	1089	21	=	=	NOUN
ddj-47	1089	22	zc	zc	X
ddj-47	1089	23	or	or	CCONJ
ddj-47	1089	24	y	y	PROPN
ddj-47	1089	25	=	=	NOUN
ddj-47	1089	26	z	z	NOUN
ddj-47	1089	27	pairing	pairing	NOUN
ddj-47	1089	28	might	might	AUX
ddj-47	1089	29	work	work	VERB
ddj-47	1089	30	tests	test	NOUN
ddj-47	1089	31	for	for	ADP
ddj-47	1089	32	y	y	PROPN
ddj-47	1089	33	=	=	PROPN
ddj-47	1089	34	z	z	PROPN
ddj-47	1089	35	and	and	CCONJ
ddj-47	1089	36	y	y	PROPN
ddj-47	1089	37	=	=	NOUN
ddj-47	1089	38	zc	zc	NOUN
ddj-47	1089	39	pairings	pairing	NOUN
ddj-47	1089	40	are	be	AUX
ddj-47	1089	41	=	=	ADJ
ddj-47	1089	42	o	o	ADJ
ddj-47	1089	43	-	-	ADJ
ddj-47	1089	44	o=	o=	ADJ
ddj-47	1089	45	flux	flux	NOUN
ddj-47	1089	46	tubes	tube	NOUN
ddj-47	1089	47	present	present	ADJ
ddj-47	1089	48	?	?	PUNCT
ddj-47	1090	1	evolution	evolution	NOUN
ddj-47	1090	2	and	and	CCONJ
ddj-47	1090	3	amino	amino	NOUN
ddj-47	1090	4	-	-	PUNCT
ddj-47	1090	5	acid	acid	NOUN
ddj-47	1090	6	pairings	pairing	NOUN
ddj-47	1090	7	a	a	DET
ddj-47	1090	8	simple	simple	ADJ
ddj-47	1090	9	quantitative	quantitative	ADJ
ddj-47	1090	10	model	model	NOUN
ddj-47	1090	11	for	for	ADP
ddj-47	1090	12	protein	protein	NOUN
ddj-47	1090	13	folding	folding	NOUN
ddj-47	1090	14	and	and	CCONJ
ddj-47	1090	15	catalyst	catalyst	NOUN
ddj-47	1090	16	action	action	NOUN
ddj-47	1090	17	assuming	assume	VERB
ddj-47	1090	18	flux	flux	NOUN
ddj-47	1090	19	tubes	tube	NOUN
ddj-47	1090	20	between	between	ADP
ddj-47	1090	21	amino	amino	NOUN
ddj-47	1090	22	-	-	PUNCT
ddj-47	1090	23	acids	acid	NOUN
ddj-47	1090	24	the	the	DET
ddj-47	1090	25	model	model	NOUN
ddj-47	1090	26	basic	basic	ADJ
ddj-47	1090	27	mathematical	mathematical	ADJ
ddj-47	1090	28	consequences	consequence	NOUN
ddj-47	1090	29	model	model	NOUN
ddj-47	1090	30	for	for	ADP
ddj-47	1090	31	the	the	DET
ddj-47	1090	32	helical	helical	ADJ
ddj-47	1090	33	structures	structure	NOUN
ddj-47	1090	34	model	model	NOUN
ddj-47	1090	35	for	for	ADP
ddj-47	1090	36	sheets	sheet	NOUN
ddj-47	1090	37	secondary	secondary	ADJ
ddj-47	1090	38	protein	protein	NOUN
ddj-47	1090	39	structures	structure	NOUN
ddj-47	1090	40	model	model	NOUN
ddj-47	1090	41	for	for	ADP
ddj-47	1090	42	protein	protein	NOUN
ddj-47	1090	43	-	-	PUNCT
ddj-47	1090	44	protein	protein	NOUN
ddj-47	1090	45	binding	bind	VERB
ddj-47	1090	46	sites	site	NOUN
ddj-47	1090	47	a	a	DET
ddj-47	1090	48	model	model	NOUN
ddj-47	1090	49	for	for	ADP
ddj-47	1090	50	protein	protein	NOUN
ddj-47	1090	51	folding	folding	NOUN
ddj-47	1090	52	based	base	VERB
ddj-47	1090	53	on	on	ADP
ddj-47	1090	54	flux	flux	NOUN
ddj-47	1090	55	tubes	tube	NOUN
ddj-47	1090	56	connections	connection	NOUN
ddj-47	1090	57	between	between	ADP
ddj-47	1090	58	water	water	NOUN
ddj-47	1090	59	molecules	molecule	NOUN
ddj-47	1090	60	and	and	CCONJ
ddj-47	1090	61	amino	amino	NOUN
ddj-47	1090	62	-	-	PUNCT
ddj-47	1090	63	acids	acid	NOUN
ddj-47	1090	64	could	could	AUX
ddj-47	1090	65	there	there	PRON
ddj-47	1090	66	be	be	AUX
ddj-47	1090	67	new	new	ADJ
ddj-47	1090	68	physics	physics	NOUN
ddj-47	1090	69	behind	behind	ADP
ddj-47	1090	70	hydrophily	hydrophily	NOUN
ddj-47	1090	71	and	and	CCONJ
ddj-47	1090	72	hydrophoby	hydrophoby	NOUN
ddj-47	1090	73	?	?	PUNCT
ddj-47	1091	1	an	an	DET
ddj-47	1091	2	improved	improved	ADJ
ddj-47	1091	3	model	model	NOUN
ddj-47	1091	4	for	for	ADP
ddj-47	1091	5	protein	protein	NOUN
ddj-47	1091	6	folding	fold	VERB
ddj-47	1091	7	a	a	DET
ddj-47	1091	8	model	model	NOUN
ddj-47	1091	9	for	for	ADP
ddj-47	1091	10	which	which	PRON
ddj-47	1091	11	the	the	DET
ddj-47	1091	12	magnetic	magnetic	ADJ
ddj-47	1091	13	body	body	NOUN
ddj-47	1091	14	of	of	ADP
ddj-47	1091	15	water	water	NOUN
ddj-47	1091	16	is	be	AUX
ddj-47	1091	17	involved	involve	VERB
ddj-47	1091	18	could	could	AUX
ddj-47	1091	19	one	one	NUM
ddj-47	1091	20	regard	regard	VERB
ddj-47	1091	21	amino	amino	NOUN
ddj-47	1091	22	-	-	PUNCT
ddj-47	1091	23	acids	acid	NOUN
ddj-47	1091	24	and	and	CCONJ
ddj-47	1091	25	dnas	dna	NOUN
ddj-47	1091	26	of	of	ADP
ddj-47	1091	27	given	give	VERB
ddj-47	1091	28	type	type	NOUN
ddj-47	1091	29	as	as	ADP
ddj-47	1091	30	analog	analog	NOUN
ddj-47	1091	31	of	of	ADP
ddj-47	1091	32	species	specie	NOUN
ddj-47	1091	33	?	?	PUNCT