untitled European Journal of Chemistry 5 (3) (2014) 541‐544 European Journal of Chemistry ISSN 2153‐2249 (Print) / ISSN 2153‐2257 (Online)  2014 Eurjchem Publishing ‐ Printed in the USA http://dx.doi.org/10.5155/eurjchem.5.3.541‐544.1049 European Journal of Chemistry Journal homepage: www.eurjchem.com Aqueous phase synthesis of polysubstituted pyrimidines/pyrrolidines catalyzed by β‐cyclodextrin Jilla Shankar, Gaddam Satish, Katla Ramesh and Nageswar Yadavalli Venkata Durga * Council of Scientific and Industrial Research‐Medicinal Chemistry and Pharmacology Division, Indian Institute of Chemical Technology, Uppal Road, Hyderabad 500‐007, India *Corresponding author at: Council of Scientific and Industrial Research‐Medicinal Chemistry and Pharmacology Division, Indian Institute of Chemical Technology, Uppal Road, Hyderabad 500‐007, India. Tel.: +91.040.27191654. Fax: +91.040.27193189. E‐mail address: dryvdnageswar@gmail.com (N.Y.V. Durga). COMMUNICATION INFORMATION ABSTRACT DOI: 10.5155/eurjchem.5.3.541‐544.1049 Received: 13 March 2014 Received in revised form: 16 April 2014 Accepted: 22 April 2014 Online: 30 September 2014 KEYWORDS Highly substituted pyrimidine/pyrrolidine derivatives were synthesized for the first time in water under neutral conditions by the reaction of aromatic amines, dimethyl/diethyl acetylene dicarboxylates, formaldehyde mediated by β‐cyclodextrin (β‐CD) in good to excellent yields. β‐Cyclodextrin can be recovered and reused without any loss of catalytic activity. The β‐Cyclodextrins employed were inexpensive and readily available when compared to other types of cyclodextrins (α, γ). Amines Formaldehyde β‐Cyclodextrin Pyrimidine derivatives Pyrrolidine derivatives Dimethyl/diethyl acetylene dicarboxylates 1. Introduction Pyrimidine derivatives are versatile building blocks in synthetic organic chemistry and many bioactive molecules [1‐ 4] with pyrimidine skeleton served as M1 muscarinic receptor agonists for the treatment of Alzheimer’s disease [5,6] and human immune deficiency virus (HIV) protease inhibitors [7]. Pyrimidine moiety is an important class of N‐containing heterocyclic system [8,9], which exhibits wide spectrum of biological activities such as bactericidal [10], fungicidal [11], analgesic [12], anti‐hypertensive [13], antimicrobial [14] and anti‐infective properties [15]. Research in potential poly‐ substituted pyrimidines prompted for the development of a variety of synthetic strategies. Vishwakarma et. al. reported the synthesis of poly‐substituted 1,2,3,4‐tetrahydropyrimidines [16]. Das et. al. reported the synthesis of poly substituted pyrrolidines and tetra‐hydropyrimidines involving indium as a catalyst in aqueous medium [17]. Zhu et. al. described a one‐pot synthesis of poly‐substituted tetrahydropyrimidines via the proton‐promoted MCRs [18]. In view of different biological activities associated with pyrimidine/pyrrolidine derivatives and in continuation of our interest in the use of cyclodextrins as mild and efficient biomimetic catalysts in promoting various organic transformations [19‐27], we here in report the synthesis of poly‐substituted tetra‐hydropyrimidine/pyrrolidine deriva‐ tives by the reaction of substituted anilines with but‐2‐ ynedioates and formaldehyde under neutral conditions involving β‐cyclodextrin in water medium. 2. Experimental 2.1. Instrumentation All chemicals were purchased from Fluka and S. D. Fine Chemicals and directly used for the synthesis. All reactions were carried out without any special precautions in an atmosphere of air. Analytical Thin Layer Chromatography (TLC) was carried out by using silica gel 60F254 pre‐coated plates. Visualization was accomplished with UV lamp or I2 staining. Melting point was obtained by Fischer‐Johns melting‐ point apparatus and uncorrected. All products were characterized by their NMR and Mass spectra. 1H NMR were recorded on 200 MHz, in CDCl3 using TMS as the internal standard and chemical shifts were reported in parts per million (ppm, δ) downfield from the tetramethylsilane. NMR Spectra: Varian 200 spectrometer; in CDCl3; δ in ppm, J in Hz. Mass spectra: VG Autospec; in m/z. IR were recorded on a Thermo Nicolet Nexus 670 FT‐IR spectrometer. 542 Shankar et al. / European Journal of Chemistry 5 (3) (2014) 541‐544 Table 1. β‐CD catalysed synthesis of polysubstituted pyrrolidines a. Entry R R1 Product Time (h) Yield (%) b 1 4‐CF3‐C6H4 CH3 4a 4.5 75 2 4‐OH‐C6H4 CH3 4b 4.5 75 3 4‐CH3‐C6H4 CH3 4c 4.5 70 4 C6H5 CH2‐CH3 4d 4.5 75 5 3‐CH3‐C6H4 CH2‐CH3 4e 4.5 68 a Reaction conditions: Amine (1.0 mmol), DMAD/DEAD (1.0 mmol), Formaldehyde (4.0 mmol), β‐Cyclodextrin (10 mol %), 60 °C. b Isolated yield. COOR1 COOR1 2 O HH NH2R -CD/H2O 60 oC N O O R1OOC R1O R1 3 Molar ratio of the reactants: 1:1:4 R= -C6H5, 4-CH3C6H4, 4-HOC6H4, 4-CF3C6H4, 3-CH3C6H4 R1= -CH3, -C2H5 68-75% 4 Scheme 1 2.2. Synthesis 2.2.1. General procedure for the synthesis of poly‐ substituted pyrrolidines β‐Cyclodextrin (1.135 g, 1 mmol) was dissolved in water (15 mL) by warming up to 60 °C until a clear solution was formed. To this clear solution, aniline (1.0 mmol) was added and stirred for 10 min, and then dimethylacetylene dicarboxylate (1.0 mmol) was added. After stirring for half an hour 4 equivalents of formaldehyde (4.0 mmol) was added. The reaction mixture was stirred until completion of the reaction as indicated by TLC. The reaction mixture was cooled and β‐ Cyclodextrin was filtered. The aqueous phase was extracted with ethyl acetate (3 × 10 mL) and the organic layers were washed with water, saturated brine solution, and dried over anhydrous Na2SO4. The combined organic layers were evaporated under reduced pressure and the resulting crude product was purified by column chromatography by using ethyl acetate: hexane (2:8, v: v) as eluent to give the corresponding ethyl 3‐(ethoxymethyl)‐4,5‐dioxo‐1‐phenylpyrrolidine‐3‐ carboxylate as pure product in good yield (Scheme 1). Methyl 1‐(4‐trifluoromethylphenyl)‐3(methoxy‐methyl)‐4,5‐ dioxopyrrolidine‐3 carboxylate (Table 1, Entry 1): Yield: 75%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 8.05 (d, 2H, J = 8.0 Hz, Ar‐H), 7.74 (d, 2H, J = 8.0 Hz, Ar‐H), 4.55 (d, 1H, J = 12.0 Hz, CH2), 4.24 (d, 1H, J = 12.0 Hz, CH2), 3.97 (d, 1H, J = 10.0 Hz, CH2), 3.87 (d, 1H, J = 10.0 Hz, CH2), 3.81 (s, 3H, OCH3), 3.36 (s,3H, OCH3). FT‐IR (KBr, , cm‐1): 1778, 1740, 1615, 1462. MS (ESI, m/z): 346 [M+H] +. Methyl 1‐(4‐hydroxyphenyl)‐3(methoxymethyl)‐4,5‐dioxo pyrrolidine‐3‐carboxylate (Table 1, Entry 2): Yield: 75%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 7.67 (d, 2H, J = 8.0 Hz, Ar‐H), 6.89 (d, 2H, J = 8.0 Hz, Ar‐H), 4.49 (d, 1H, J = 12.0 Hz, CH2), 4.25 (d, 1H, J = 12.0 Hz,CH2), 4.00 (d, 1H, J = 10.0 Hz, CH2), 3.92 (d, 1H, J = 10.0 Hz, CH2), 3.85 (s, 3H, OCH3), 3.36(s, 3H, OCH3), 2.86 (s, 1H, OH). FT‐IR (KBr, , cm‐1): 3378, 1775 1695, 1517, 1462. MS (ESI, m/z):294 [M+H] +. Methyl 3‐(methoxymethyl)‐4, 5‐dioxo‐1‐(p‐tolyl) pyrrolidine‐ 3‐carboxylate (Table 1, Entry 3): Yield: 70%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 7.75 (s, 1H, Ar‐H), 7.66 (d, 1H, J = 8.0 Hz, Ar‐H), 7.30 (t, 1H, J = 8.0 Hz, Ar‐H), 7.12 (d, 1H, J = 8.0 Hz, Ar‐H), 4.55 (d,1H, J = 12.0 Hz, CH2), 4.26 (d, 1H, J = 12.0 Hz, CH2), 3.96 (d, 1H, J = 10.0 Hz, CH2), 3.85 (d, 1H, J = 10.0 Hz, CH2), 3.78 (s, 3H, OCH3 ), 3.32 (s, 3H, OCH3 ), 2.46 (s, 3H, CH3). FT‐IR (KBr, , cm‐1): 1776, 1714, 1519, 1265. MS (ESI, m/z): 292 [M+H] +. Ethyl 3‐(ethoxymethyl)‐4,5‐dioxo‐1‐phenylpyrrolidine‐3‐ carboxylate (Table 1, Entry 4): Yield: 75%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 7.88 (d, 2H, J = 8.0, Ar‐H), 7.44 (m, 2H, J = 8.0 Hz, Ar‐H), 7.28 (m, 1H, J = 12.0 Hz, Ar‐H), 4.25 (m, 3H, J = 12.0 Hz, CH2), 4.23 (d, 1H, J = 12.0 Hz, CH2), 3.93 (q, 2H, J = 10.0 Hz, OCH2), 3.56 (q, 2H, J = 7.0 Hz, OCH2), 1.27 (t, 3H, J = 7.0 Hz, CH3), 1.07 (t, 3H, J = 7.0 Hz, CH3). FT‐IR (KBr, , cm‐1): 1778, 1735, 1598, 1485. MS (ESI, m/z): 306 [M+H] +. Ethyl 1‐(3‐methylphenyl)‐3(ethoxymethyl)‐4,5‐dioxopyrroli dine‐3‐carboxylate (Table 1, Entry 5): Yield: 68%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 7.82 (s, 1H, Ar‐H), 7.79 (d, 1H, J = 8.0, Ar‐H), 7.44 (t, 1H, J = 8.0 Hz, Ar‐H), 7.19 (d, 1H, J = 8.0, aro ), 4.50 (1H, d, J = 12.0 Hz, CH2), 4.28 (3H, m, CH2), 3.97 (2H, q, J = 7.0 Hz, CH2), 3.49 (2H, q, J = 7.0 Hz, CH2), 2.45 (3H, s, CH3), 1.29 (t, 3H, J = 7.0 Hz, CH3), 1.11 (t, 3H, J = 7.0 Hz, CH3). FT‐IR (KBr, , cm‐1): 1772, 1710, 1517, 1255. MS (ESI, m/z): 320 [M+H]+. 2.2.2. General procedure for the synthesis of 1,2,3,6‐tetra hydropyrimidines β‐Cyclodextrin (1.135 g, 1 mmol) was dissolved in water (15 mL) by warming up to 60 °C until a clear solution was formed. To this clear solution, aniline (1.0 mmol) was added and stirred for 10 min, and then dimethylacetylene dicarboxylate (1.0 mmol) was added. After stirring for half an hour another 1 equivalent of aniline (1.0 mmol) was added followed by the addition of 4 equivalents of formaldehyde (4.0 mmol). The reaction mixture was stirred until completion of the reaction as indicated by TLC. The reaction mixture was cooled and β‐CD was filtered. The aqueous phase was extracted with ethyl acetate (3 × 10 mL) and the organic layers were washed with water, saturated brine solution, and dried over anhydrous Na2SO4. The combined organic layers were evaporated under reduced pressure and the resulting crude product was purified by column chromatography by using ethyl acetate: hexane (2:8, v:v) as eluent to give the corresponding dimethyl 1,3‐diphenyl‐1,2,3,6‐tetrahydropyrimidine‐4,5‐dicar‐ boxylate as pure product in good yield (Scheme 2). Dimethyl 1,3‐diphenyl‐1,2,3,6‐tetrahydropyrimidine‐4,5‐ dicarboxylate (Table 2, Entry 1): Yield: 65%. Color: Yellow oil. Shankar et al. / European Journal of Chemistry 5 (3) (2014) 541‐544 543 Table 2. β‐CD catalysed synthesis of polysubstituted tetrahydropyrimidines a. Entry R R1 Product Time (h) Yield (%) b 1 C6H5 CH3 5a 4.5 65 2 4‐OCH3‐C6H4 CH3 5b 4.5 68 3 4‐CH3‐C6H4 CH3 5c 4.5 67 4 4‐CF3‐C6H4 CH3 5d 4.5 70 5 4‐CF3‐C6H4 CH2‐CH3 5e 4.5 70 a Reaction conditions: Amine (2.0 mmol), DMAD/DEAD (1.0 mmol), Formaldehyde (4.0 mmol), β‐Cyclodextrin (10 mol %), 60 °C. b Isolated yield. Scheme 2 1H NMR (200 MHz, CDCl3, , ppm): 7.67 (d, 2H, J = 8.0 Hz, Ar‐H), 7.51 (d, 2H, J = 8.0 Hz, Ar‐H), 7.44 (d, 2H, J = 8.0 Hz, Ar‐ H), 6.84 (d, 2H, J = 8.0 Hz, Ar‐H), 6.65 (d, 2H, J = 8.0 Hz, Ar‐H), 4.92 (s, 2H, CH2), 4.35 (s, 2H, CH2), 3.77 (s, 3H, CH3), 3.65 (s, 3H, CH3). FT‐IR (KBr, , cm‐1): 1749, 1715, 1617, 1336. MS (ESI, m/z): 353 [M+H] +. Dimethyl 1,3‐bis(4‐methoxyphenyl)‐1,2,3,6‐tetrahydro pyrimidine‐4,5‐dicarboxylate (Table 2, Entry 2): Yield: 68%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 6.85 (d, 2H, J = 8.0 Hz, Ar‐H), 6.77 (d, 2H, J = 8.0 Hz, Ar‐H), 6.72 (d, 2H, J = 8.0 Hz, Ar‐H), 6.69 (d, 2H, J = 8.0 Hz, Ar‐H), 4.74 (s, 2H, CH2), 4.12 (s, 2H, CH2 ), 3.74 (s, 6H, OCH3), 3.69 (s, 3H, CH3 ), 3.56 (s, 3H, CH3). FT‐IR (KBr, , cm‐1): 1743, 1696, 1583, 1437, 1250. MS (ESI, m/z): 435 [M+Na] +. Dimethyl 1,3‐di‐p‐tolyl‐1,2,3,6‐tetrahydropyrimidine‐4,5‐ dicarboxylate (Table 2, Entry 3): Yield: 67%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 7.35 (d, 2H, J = 8.0 Hz, Ar‐H), 7.22 (d, 2H, J = 8.0 Hz, Ar‐H), 6.75 (d, 2H, J = 8.0 Hz, Ar‐H), 6.65 (d, 2H, J = 8.0 Hz, Ar‐H), 4.85 (s, 2H, CH2), 4.22 (s, 2H, CH2), 3.79 (s, 3H, CH3), 3.58 (s, 3H, CH3), 2.35, (s, 3H, CH3 ) 2.25 (s, 3H, CH3). FT‐IR (KBr, , cm‐1): 1746, 1697, 1584, 1438, 1255. MS (ESI, m/z): 381 [M+H] +. Dimethyl 1,3‐bis(4‐(trifluoromethyl)phenyl)‐1,2,3,6‐tetra hydropyrimidine‐4,5 dicarboxylate (Table 2, Entry 4): Yield: 70%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 7.60 (d, 2H, J = 8.0 Hz, Ar‐H), 7.39 (d, 2H, J = 8.0 Hz, Ar‐H), 7.12 (d, 2H, J = 8.0 Hz, Ar‐H), 6.83 (d, 2H, J = 8.0 Hz, Ar‐H), 4.90 (s, 2H, CH2), 4.32 (s, 2H, CH2 ), 3.76 (s, 3H, CH3), 3.63 (s, 3H, CH3). FT‐IR (KBr, , cm‐1): 1745, 1710, 1609, 1440. MS (ESI, m/z): 489 [M+H] +. Diethyl 1,3‐bis(4‐(trifluoromethyl)phenyl)‐1,2,3,6‐tetrahydro pyrimidine‐4,5‐dicarboxylate (Table 2, Entry 5): Yield: 70%. Color: Yellow oil. 1H NMR (200 MHz, CDCl3, , ppm): 7.57 (d, 2H, J = 8.0 Hz, Ar‐H), 7.42 (d, 2H, J = 8.0 Hz, Ar‐H), 7.15 (d, 2H, J = 8.0 Hz, Ar‐H), 6.79 (d, 2H, J = 8.0 Hz, Ar‐H), 4.90 (s, 2H, CH2), 4.33 (s, 2H, CH2), 4.25 (q, 2H, J = 7.0 Hz, OCH2), 4.10 (q, 2H, J = 7.0 Hz, OCH2), 1.33 (t, 3H, J = 7.0 Hz, CH3), 1.09 (t, 3H, J = 7.0 Hz, CH3). FT‐IR (KBr, , cm‐1): 1742, 1711, 1615, 1330. MS (ESI, m/z): 517 [M+H] +. 3. Results and discussion Cyclodextrins are cyclic oligosaccharides possessing hydrophobic cavities, which bind substrates selectively and catalyze different chemical reactions by supramolecular catalysis involving reversible formation of host‐guest complexes. We describe herein, the aqueous phase synthesis of poly‐substituted tetra hydro pyrimidine/pyrrolidine deriva‐ tives demonstrating the remarkable catalytic activity of β‐ cyclodextrin (Schemes 1 and 2). In general, the reaction was carried out by the in situ formation of the β‐CD complex of aniline in water followed by the addition of but‐2‐ynedioate and formaldehyde. These reaction mixtures were stirred at 60 °C to give the corresponding poly‐substituted tetrahydro pyrimidines/pyrrolidines at high yields (65‐75%). The reaction goes to the completion in 4.5 h. These reactions also take place with α‐CD and γ‐CD, but with lesser yields. However, β‐CD was selected as the mediator since it is inexpensive and easily accessible. Several examples illustrating this simple and practical methodology are summarized in (Table 1 and 2). No byproduct formation was observed. All the compounds were characterized by 1H NMR, IR, and mass spectrometry. The catalytic activity of cyclodextrins in these reactions was established by the fact that no reaction was observed in the absence of cyclodextrin. Evidence for complexation between the amine and cyclodextrin is supported by 1H NMR spectros‐ copy. The complexation with β‐CD increases the reactivity of amino group of aniline due to the intermolecular hydrogen bonding with the CD‐hydroxyl groups facilitating the addition of but‐2‐ynedioates. Here, β‐CD not only forms the inclusion complex with aniline but is also involved in the intermolecular hydrogen bonding with the guest to promote the reaction. After the completion of reaction, the reaction mixture was cooled to room temperature and β‐CD was filtered and washed with ice‐ cold water and dried. 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