id	sid	tid	token	lemma	pos
finefocus-683	1	1	fine	fine	ADJ
finefocus-683	1	2	focus	focus	NOUN
finefocus-683	1	3	,	,	PUNCT
finefocus-683	1	4	vol	vol	NOUN
finefocus-683	1	5	.	.	NOUN
finefocus-683	1	6	3	3	NUM
finefocus-683	1	7	(	(	PUNCT
finefocus-683	1	8	2	2	NUM
finefocus-683	1	9	)	)	PUNCT
finefocus-683	1	10	organization	organization	NOUN
finefocus-683	1	11	of	of	ADP
finefocus-683	1	12	the	the	DET
finefocus-683	1	13	multigene	multigene	ADJ
finefocus-683	1	14	families	family	NOUN
finefocus-683	1	15	of	of	ADP
finefocus-683	1	16	african	african	ADJ
finefocus-683	1	17	swine	swine	ADJ
finefocus-683	1	18	fever	fever	NOUN
finefocus-683	1	19	virus	virus	NOUN
finefocus-683	1	20	jacob	jacob	PROPN
finefocus-683	1	21	imbery	imbery	PROPN
finefocus-683	1	22	&	&	CCONJ
finefocus-683	1	23	chris	chris	PROPN
finefocus-683	1	24	upton	upton	PROPN
finefocus-683	1	25	*	*	PUNCT
finefocus-683	1	26	biochemistry	biochemistry	NOUN
finefocus-683	1	27	and	and	CCONJ
finefocus-683	1	28	microbiology	microbiology	NOUN
finefocus-683	1	29	,	,	PUNCT
finefocus-683	1	30	university	university	PROPN
finefocus-683	1	31	of	of	ADP
finefocus-683	1	32	victoria	victoria	PROPN
finefocus-683	1	33	,	,	PUNCT
finefocus-683	1	34	victoria	victoria	PROPN
finefocus-683	1	35	,	,	PUNCT
finefocus-683	1	36	bc	bc	PROPN
finefocus-683	1	37	v8w	v8w	ADP
finefocus-683	1	38	2y2	2y2	NUM
finefocus-683	1	39	,	,	PUNCT
finefocus-683	1	40	canada	canada	PROPN
finefocus-683	1	41	manuscript	manuscript	NOUN
finefocus-683	1	42	received	receive	VERB
finefocus-683	1	43	18	18	NUM
finefocus-683	1	44	april	april	PROPN
finefocus-683	1	45	2017	2017	NUM
finefocus-683	1	46	;	;	PUNCT
finefocus-683	1	47	accepted	accept	VERB
finefocus-683	1	48	13	13	NUM
finefocus-683	1	49	june	june	PROPN
finefocus-683	1	50	2017	2017	NUM
finefocus-683	1	51	copyright	copyright	NOUN
finefocus-683	1	52	2017	2017	NUM
finefocus-683	1	53	,	,	PUNCT
finefocus-683	1	54	fine	fine	ADJ
finefocus-683	1	55	focus	focus	NOUN
finefocus-683	1	56	.	.	PUNCT
finefocus-683	2	1	all	all	DET
finefocus-683	2	2	rights	right	NOUN
finefocus-683	2	3	reserved	reserve	VERB
finefocus-683	2	4	.	.	PUNCT
finefocus-683	3	1	african	african	ADJ
finefocus-683	3	2	swine	swine	ADJ
finefocus-683	3	3	fever	fever	NOUN
finefocus-683	3	4	virus	virus	NOUN
finefocus-683	3	5	•	•	NOUN
finefocus-683	3	6	155154	155154	NUM
finefocus-683	3	7	•	•	NUM
finefocus-683	3	8	fine	fine	ADJ
finefocus-683	3	9	focus	focus	NOUN
finefocus-683	3	10	,	,	PUNCT
finefocus-683	3	11	vol	vol	NOUN
finefocus-683	3	12	.	.	NOUN
finefocus-683	3	13	3	3	NUM
finefocus-683	3	14	(	(	PUNCT
finefocus-683	3	15	2	2	NUM
finefocus-683	3	16	)	)	PUNCT
finefocus-683	3	17	african	african	ADJ
finefocus-683	3	18	swine	swine	ADJ
finefocus-683	3	19	fever	fever	NOUN
finefocus-683	3	20	virus	virus	NOUN
finefocus-683	3	21	is	be	AUX
finefocus-683	3	22	a	a	DET
finefocus-683	3	23	complex	complex	ADJ
finefocus-683	3	24	dna	dna	NOUN
finefocus-683	3	25	virus	virus	NOUN
finefocus-683	3	26	that	that	PRON
finefocus-683	3	27	infects	infect	VERB
finefocus-683	3	28	swine	swine	NOUN
finefocus-683	3	29	and	and	CCONJ
finefocus-683	3	30	is	be	AUX
finefocus-683	3	31	spread	spread	VERB
finefocus-683	3	32	by	by	ADP
finefocus-683	3	33	ticks	tick	NOUN
finefocus-683	3	34	.	.	PUNCT
finefocus-683	4	1	mortality	mortality	NOUN
finefocus-683	4	2	rates	rate	NOUN
finefocus-683	4	3	in	in	ADP
finefocus-683	4	4	domestic	domestic	ADJ
finefocus-683	4	5	pigs	pig	NOUN
finefocus-683	4	6	are	be	AUX
finefocus-683	4	7	very	very	ADV
finefocus-683	4	8	high	high	ADJ
finefocus-683	4	9	and	and	CCONJ
finefocus-683	4	10	the	the	DET
finefocus-683	4	11	virus	virus	NOUN
finefocus-683	4	12	is	be	AUX
finefocus-683	4	13	a	a	DET
finefocus-683	4	14	significant	significant	ADJ
finefocus-683	4	15	threat	threat	NOUN
finefocus-683	4	16	to	to	PART
finefocus-683	4	17	pork	pork	VERB
finefocus-683	4	18	farming	farming	NOUN
finefocus-683	4	19	.	.	PUNCT
finefocus-683	5	1	the	the	DET
finefocus-683	5	2	genomes	genome	NOUN
finefocus-683	5	3	of	of	ADP
finefocus-683	5	4	16	16	NUM
finefocus-683	5	5	viruses	virus	NOUN
finefocus-683	5	6	have	have	AUX
finefocus-683	5	7	been	be	AUX
finefocus-683	5	8	sequenced	sequence	VERB
finefocus-683	5	9	completely	completely	ADV
finefocus-683	5	10	,	,	PUNCT
finefocus-683	5	11	but	but	CCONJ
finefocus-683	5	12	these	these	PRON
finefocus-683	5	13	represent	represent	VERB
finefocus-683	5	14	only	only	ADV
finefocus-683	5	15	a	a	DET
finefocus-683	5	16	few	few	ADJ
finefocus-683	5	17	of	of	ADP
finefocus-683	5	18	the	the	DET
finefocus-683	5	19	23	23	NUM
finefocus-683	5	20	genotypes	genotype	NOUN
finefocus-683	5	21	.	.	PUNCT
finefocus-683	6	1	the	the	DET
finefocus-683	6	2	viral	viral	ADJ
finefocus-683	6	3	genome	genome	NOUN
finefocus-683	6	4	is	be	AUX
finefocus-683	6	5	unusual	unusual	ADJ
finefocus-683	6	6	in	in	SCONJ
finefocus-683	6	7	that	that	SCONJ
finefocus-683	6	8	it	it	PRON
finefocus-683	6	9	contains	contain	VERB
finefocus-683	6	10	5	5	NUM
finefocus-683	6	11	multigene	multigene	NOUN
finefocus-683	6	12	families	family	NOUN
finefocus-683	6	13	,	,	PUNCT
finefocus-683	6	14	each	each	PRON
finefocus-683	6	15	of	of	ADP
finefocus-683	6	16	which	which	PRON
finefocus-683	6	17	contain	contain	VERB
finefocus-683	6	18	3	3	NUM
finefocus-683	6	19	-	-	SYM
finefocus-683	6	20	19	19	NUM
finefocus-683	6	21	duplicated	duplicate	VERB
finefocus-683	6	22	copies	copy	NOUN
finefocus-683	6	23	(	(	PUNCT
finefocus-683	6	24	paralogs	paralog	NOUN
finefocus-683	6	25	)	)	PUNCT
finefocus-683	6	26	.	.	PUNCT
finefocus-683	7	1	there	there	PRON
finefocus-683	7	2	is	be	VERB
finefocus-683	7	3	significant	significant	ADJ
finefocus-683	7	4	sequence	sequence	NOUN
finefocus-683	7	5	divergence	divergence	NOUN
finefocus-683	7	6	between	between	ADP
finefocus-683	7	7	the	the	DET
finefocus-683	7	8	paralogs	paralog	NOUN
finefocus-683	7	9	in	in	ADP
finefocus-683	7	10	a	a	DET
finefocus-683	7	11	single	single	ADJ
finefocus-683	7	12	virus	virus	NOUN
finefocus-683	7	13	and	and	CCONJ
finefocus-683	7	14	between	between	ADP
finefocus-683	7	15	the	the	DET
finefocus-683	7	16	orthologs	ortholog	NOUN
finefocus-683	7	17	in	in	ADP
finefocus-683	7	18	the	the	DET
finefocus-683	7	19	different	different	ADJ
finefocus-683	7	20	viral	viral	ADJ
finefocus-683	7	21	genomes	genome	NOUN
finefocus-683	7	22	.	.	PUNCT
finefocus-683	8	1	this	this	PRON
finefocus-683	8	2	,	,	PUNCT
finefocus-683	8	3	together	together	ADV
finefocus-683	8	4	with	with	ADP
finefocus-683	8	5	the	the	DET
finefocus-683	8	6	fact	fact	NOUN
finefocus-683	8	7	that	that	SCONJ
finefocus-683	8	8	in	in	ADP
finefocus-683	8	9	most	most	ADJ
finefocus-683	8	10	of	of	ADP
finefocus-683	8	11	the	the	DET
finefocus-683	8	12	multigene	multigene	ADJ
finefocus-683	8	13	families	family	NOUN
finefocus-683	8	14	there	there	PRON
finefocus-683	8	15	are	be	VERB
finefocus-683	8	16	numerous	numerous	ADJ
finefocus-683	8	17	gene	gene	NOUN
finefocus-683	8	18	indels	indel	NOUN
finefocus-683	8	19	that	that	PRON
finefocus-683	8	20	create	create	VERB
finefocus-683	8	21	truncations	truncation	NOUN
finefocus-683	8	22	and	and	CCONJ
finefocus-683	8	23	fusions	fusion	NOUN
finefocus-683	8	24	,	,	PUNCT
finefocus-683	8	25	makes	make	VERB
finefocus-683	8	26	annotation	annotation	NOUN
finefocus-683	8	27	of	of	ADP
finefocus-683	8	28	these	these	DET
finefocus-683	8	29	regions	region	NOUN
finefocus-683	8	30	very	very	ADV
finefocus-683	8	31	difficult	difficult	ADJ
finefocus-683	8	32	;	;	PUNCT
finefocus-683	8	33	it	it	PRON
finefocus-683	8	34	has	have	AUX
finefocus-683	8	35	led	lead	VERB
finefocus-683	8	36	to	to	ADP
finefocus-683	8	37	inconsistent	inconsistent	ADJ
finefocus-683	8	38	annotation	annotation	NOUN
finefocus-683	8	39	of	of	ADP
finefocus-683	8	40	the	the	DET
finefocus-683	8	41	16	16	NUM
finefocus-683	8	42	viral	viral	ADJ
finefocus-683	8	43	genomes	genome	NOUN
finefocus-683	8	44	.	.	PUNCT
finefocus-683	9	1	in	in	ADP
finefocus-683	9	2	this	this	DET
finefocus-683	9	3	project	project	NOUN
finefocus-683	9	4	,	,	PUNCT
finefocus-683	9	5	we	we	PRON
finefocus-683	9	6	have	have	AUX
finefocus-683	9	7	created	create	VERB
finefocus-683	9	8	multiple	multiple	ADJ
finefocus-683	9	9	sequence	sequence	NOUN
finefocus-683	9	10	alignments	alignment	NOUN
finefocus-683	9	11	for	for	ADP
finefocus-683	9	12	each	each	PRON
finefocus-683	9	13	of	of	ADP
finefocus-683	9	14	the	the	DET
finefocus-683	9	15	multigene	multigene	ADJ
finefocus-683	9	16	families	family	NOUN
finefocus-683	9	17	and	and	CCONJ
finefocus-683	9	18	have	have	AUX
finefocus-683	9	19	produced	produce	VERB
finefocus-683	9	20	gene	gene	NOUN
finefocus-683	9	21	maps	map	NOUN
finefocus-683	9	22	to	to	PART
finefocus-683	9	23	help	help	VERB
finefocus-683	9	24	researchers	researcher	NOUN
finefocus-683	9	25	more	more	ADV
finefocus-683	9	26	easily	easily	ADV
finefocus-683	9	27	understand	understand	VERB
finefocus-683	9	28	the	the	DET
finefocus-683	9	29	organization	organization	NOUN
finefocus-683	9	30	of	of	ADP
finefocus-683	9	31	the	the	DET
finefocus-683	9	32	multigene	multigene	ADJ
finefocus-683	9	33	families	family	NOUN
finefocus-683	9	34	among	among	ADP
finefocus-683	9	35	the	the	DET
finefocus-683	9	36	different	different	ADJ
finefocus-683	9	37	viruses	virus	NOUN
finefocus-683	9	38	.	.	PUNCT
finefocus-683	10	1	these	these	DET
finefocus-683	10	2	gene	gene	NOUN
finefocus-683	10	3	maps	map	NOUN
finefocus-683	10	4	will	will	AUX
finefocus-683	10	5	help	help	VERB
finefocus-683	10	6	researchers	researcher	NOUN
finefocus-683	10	7	ascertain	ascertain	VERB
finefocus-683	10	8	which	which	PRON
finefocus-683	10	9	members	member	NOUN
finefocus-683	10	10	of	of	ADP
finefocus-683	10	11	the	the	DET
finefocus-683	10	12	multigene	multigene	NOUN
finefocus-683	10	13	families	family	NOUN
finefocus-683	10	14	are	be	AUX
finefocus-683	10	15	present	present	ADJ
finefocus-683	10	16	in	in	ADP
finefocus-683	10	17	each	each	PRON
finefocus-683	10	18	of	of	ADP
finefocus-683	10	19	the	the	DET
finefocus-683	10	20	viruses	virus	NOUN
finefocus-683	10	21	.	.	PUNCT
finefocus-683	11	1	this	this	PRON
finefocus-683	11	2	is	be	AUX
finefocus-683	11	3	critical	critical	ADJ
finefocus-683	11	4	because	because	SCONJ
finefocus-683	11	5	some	some	PRON
finefocus-683	11	6	of	of	ADP
finefocus-683	11	7	the	the	DET
finefocus-683	11	8	multigene	multigene	ADJ
finefocus-683	11	9	families	family	NOUN
finefocus-683	11	10	are	be	AUX
finefocus-683	11	11	known	know	VERB
finefocus-683	11	12	to	to	PART
finefocus-683	11	13	be	be	AUX
finefocus-683	11	14	associated	associate	VERB
finefocus-683	11	15	with	with	ADP
finefocus-683	11	16	virus	virus	NOUN
finefocus-683	11	17	virulence	virulence	NOUN
finefocus-683	11	18	.	.	PUNCT
finefocus-683	12	1	abstract	abstract	ADJ
finefocus-683	12	2	corresponding	correspond	VERB
finefocus-683	12	3	author	author	NOUN
finefocus-683	12	4	chris	chris	PROPN
finefocus-683	12	5	upton	upton	PROPN
finefocus-683	12	6	*	*	PUNCT
finefocus-683	12	7	biochemistry	biochemistry	NOUN
finefocus-683	12	8	and	and	CCONJ
finefocus-683	12	9	microbiology	microbiology	NOUN
finefocus-683	12	10	,	,	PUNCT
finefocus-683	12	11	university	university	PROPN
finefocus-683	12	12	of	of	ADP
finefocus-683	12	13	victoria	victoria	PROPN
finefocus-683	12	14	,	,	PUNCT
finefocus-683	12	15	victoria	victoria	PROPN
finefocus-683	12	16	,	,	PUNCT
finefocus-683	12	17	bc	bc	PROPN
finefocus-683	12	18	v8w	v8w	ADP
finefocus-683	12	19	2y2	2y2	NUM
finefocus-683	12	20	,	,	PUNCT
finefocus-683	12	21	canada	canada	PROPN
finefocus-683	12	22	keywords	keyword	VERB
finefocus-683	12	23	•	•	NUM
finefocus-683	12	24	african	african	ADJ
finefocus-683	12	25	swine	swine	ADJ
finefocus-683	12	26	fever	fever	NOUN
finefocus-683	12	27	virus	virus	NOUN
finefocus-683	12	28	•	•	ADP
finefocus-683	12	29	multigene	multigene	X
finefocus-683	12	30	family	family	NOUN
finefocus-683	12	31	•	•	NOUN
finefocus-683	12	32	annotation	annotation	NOUN
finefocus-683	12	33	•	•	NUM
finefocus-683	12	34	bioinformatics	bioinformatics	NOUN
finefocus-683	12	35	•	•	NOUN
finefocus-683	12	36	genomics	genomic	NOUN
finefocus-683	12	37	african	african	ADJ
finefocus-683	12	38	swine	swine	ADJ
finefocus-683	12	39	fever	fever	NOUN
finefocus-683	12	40	virus	virus	NOUN
finefocus-683	12	41	(	(	PUNCT
finefocus-683	12	42	asfv	asfv	ADV
finefocus-683	12	43	)	)	PUNCT
finefocus-683	12	44	is	be	AUX
finefocus-683	12	45	a	a	DET
finefocus-683	12	46	large	large	ADJ
finefocus-683	12	47	dsdna	dsdna	NOUN
finefocus-683	12	48	virus	virus	NOUN
finefocus-683	12	49	in	in	ADP
finefocus-683	12	50	the	the	DET
finefocus-683	12	51	family	family	NOUN
finefocus-683	12	52	asfarviridae	asfarviridae	NOUN
finefocus-683	12	53	;	;	PUNCT
finefocus-683	12	54	23	23	NUM
finefocus-683	12	55	genotypes	genotype	NOUN
finefocus-683	12	56	have	have	AUX
finefocus-683	12	57	been	be	AUX
finefocus-683	12	58	characterized	characterize	VERB
finefocus-683	12	59	by	by	ADP
finefocus-683	12	60	sequencing	sequence	VERB
finefocus-683	12	61	of	of	ADP
finefocus-683	12	62	the	the	DET
finefocus-683	12	63	p72	p72	ADJ
finefocus-683	12	64	gene	gene	NOUN
finefocus-683	12	65	(	(	PUNCT
finefocus-683	12	66	1	1	NUM
finefocus-683	12	67	,	,	PUNCT
finefocus-683	12	68	12	12	NUM
finefocus-683	12	69	,	,	PUNCT
finefocus-683	12	70	13	13	NUM
finefocus-683	12	71	)	)	PUNCT
finefocus-683	12	72	.	.	PUNCT
finefocus-683	13	1	the	the	DET
finefocus-683	13	2	virus	virus	NOUN
finefocus-683	13	3	is	be	AUX
finefocus-683	13	4	endemic	endemic	ADJ
finefocus-683	13	5	in	in	ADP
finefocus-683	13	6	many	many	ADJ
finefocus-683	13	7	regions	region	NOUN
finefocus-683	13	8	of	of	ADP
finefocus-683	13	9	africa	africa	PROPN
finefocus-683	13	10	where	where	SCONJ
finefocus-683	13	11	it	it	PRON
finefocus-683	13	12	infects	infect	VERB
finefocus-683	13	13	primarily	primarily	ADV
finefocus-683	13	14	warthogs	warthog	NOUN
finefocus-683	13	15	and	and	CCONJ
finefocus-683	13	16	is	be	AUX
finefocus-683	13	17	spread	spread	VERB
finefocus-683	13	18	via	via	ADP
finefocus-683	13	19	the	the	DET
finefocus-683	13	20	bites	bite	NOUN
finefocus-683	13	21	of	of	ADP
finefocus-683	13	22	soft	soft	ADJ
finefocus-683	13	23	ticks	tick	NOUN
finefocus-683	13	24	(	(	PUNCT
finefocus-683	13	25	9	9	NUM
finefocus-683	13	26	)	)	PUNCT
finefocus-683	13	27	.	.	PUNCT
finefocus-683	14	1	although	although	SCONJ
finefocus-683	14	2	asfv	asfv	NOUN
finefocus-683	14	3	causes	cause	VERB
finefocus-683	14	4	mild	mild	ADJ
finefocus-683	14	5	symptoms	symptom	NOUN
finefocus-683	14	6	in	in	ADP
finefocus-683	14	7	warthogs	warthog	NOUN
finefocus-683	14	8	and	and	CCONJ
finefocus-683	14	9	produces	produce	VERB
finefocus-683	14	10	no	no	DET
finefocus-683	14	11	symptoms	symptom	NOUN
finefocus-683	14	12	while	while	SCONJ
finefocus-683	14	13	replicating	replicate	VERB
finefocus-683	14	14	in	in	ADP
finefocus-683	14	15	the	the	DET
finefocus-683	14	16	ticks	tick	NOUN
finefocus-683	14	17	,	,	PUNCT
finefocus-683	14	18	it	it	PRON
finefocus-683	14	19	causes	cause	VERB
finefocus-683	14	20	very	very	ADV
finefocus-683	14	21	serious	serious	ADJ
finefocus-683	14	22	haemorrhagic	haemorrhagic	ADJ
finefocus-683	14	23	disease	disease	NOUN
finefocus-683	14	24	in	in	ADP
finefocus-683	14	25	domestic	domestic	ADJ
finefocus-683	14	26	pigs	pig	NOUN
finefocus-683	14	27	and	and	CCONJ
finefocus-683	14	28	wild	wild	ADJ
finefocus-683	14	29	boar	boar	NOUN
finefocus-683	14	30	.	.	PUNCT
finefocus-683	15	1	in	in	ADP
finefocus-683	15	2	these	these	DET
finefocus-683	15	3	animals	animal	NOUN
finefocus-683	15	4	,	,	PUNCT
finefocus-683	15	5	the	the	DET
finefocus-683	15	6	mortality	mortality	NOUN
finefocus-683	15	7	rate	rate	NOUN
finefocus-683	15	8	approaches	approach	VERB
finefocus-683	15	9	100	100	NUM
finefocus-683	15	10	%	%	NOUN
finefocus-683	15	11	for	for	ADP
finefocus-683	15	12	some	some	DET
finefocus-683	15	13	asfv	asfv	NOUN
finefocus-683	15	14	strains	strain	NOUN
finefocus-683	15	15	(	(	PUNCT
finefocus-683	15	16	18	18	NUM
finefocus-683	15	17	)	)	PUNCT
finefocus-683	15	18	.	.	PUNCT
finefocus-683	16	1	the	the	DET
finefocus-683	16	2	relatively	relatively	ADV
finefocus-683	16	3	recent	recent	ADJ
finefocus-683	16	4	(	(	PUNCT
finefocus-683	16	5	2014	2014	NUM
finefocus-683	16	6	)	)	PUNCT
finefocus-683	16	7	but	but	CCONJ
finefocus-683	16	8	extensive	extensive	ADJ
finefocus-683	16	9	spread	spread	NOUN
finefocus-683	16	10	of	of	ADP
finefocus-683	16	11	asfv	asfv	NOUN
finefocus-683	16	12	through	through	ADP
finefocus-683	16	13	africa	africa	PROPN
finefocus-683	16	14	to	to	ADP
finefocus-683	16	15	parts	part	NOUN
finefocus-683	16	16	of	of	ADP
finefocus-683	16	17	central	central	ADJ
finefocus-683	16	18	europe	europe	PROPN
finefocus-683	16	19	takes	take	VERB
finefocus-683	16	20	a	a	DET
finefocus-683	16	21	significant	significant	ADJ
finefocus-683	16	22	toll	toll	NOUN
finefocus-683	16	23	on	on	ADP
finefocus-683	16	24	both	both	CCONJ
finefocus-683	16	25	small	small	ADJ
finefocus-683	16	26	and	and	CCONJ
finefocus-683	16	27	large	large	ADJ
finefocus-683	16	28	-	-	PUNCT
finefocus-683	16	29	scale	scale	NOUN
finefocus-683	16	30	pig	pig	NOUN
finefocus-683	16	31	farming	farming	NOUN
finefocus-683	16	32	operations	operation	NOUN
finefocus-683	16	33	in	in	ADP
finefocus-683	16	34	these	these	DET
finefocus-683	16	35	regions	region	NOUN
finefocus-683	16	36	,	,	PUNCT
finefocus-683	16	37	putting	put	VERB
finefocus-683	16	38	a	a	DET
finefocus-683	16	39	large	large	ADJ
finefocus-683	16	40	strain	strain	NOUN
finefocus-683	16	41	on	on	ADP
finefocus-683	16	42	the	the	DET
finefocus-683	16	43	global	global	ADJ
finefocus-683	16	44	pig	pig	NOUN
finefocus-683	16	45	trade	trade	NOUN
finefocus-683	16	46	(	(	PUNCT
finefocus-683	16	47	5	5	NUM
finefocus-683	16	48	)	)	PUNCT
finefocus-683	16	49	.	.	PUNCT
finefocus-683	17	1	to	to	ADP
finefocus-683	17	2	date	date	NOUN
finefocus-683	17	3	,	,	PUNCT
finefocus-683	17	4	most	most	ADV
finefocus-683	17	5	successful	successful	ADJ
finefocus-683	17	6	viral	viral	ADJ
finefocus-683	17	7	prevention	prevention	NOUN
finefocus-683	17	8	introduction	introduction	NOUN
finefocus-683	17	9	methods	method	NOUN
finefocus-683	17	10	rely	rely	VERB
finefocus-683	17	11	on	on	ADP
finefocus-683	17	12	routine	routine	ADJ
finefocus-683	17	13	degenerate	degenerate	ADJ
finefocus-683	17	14	pcr	pcr	NOUN
finefocus-683	17	15	screening	screening	NOUN
finefocus-683	17	16	of	of	ADP
finefocus-683	17	17	wild	wild	ADJ
finefocus-683	17	18	pig	pig	NOUN
finefocus-683	17	19	and	and	CCONJ
finefocus-683	17	20	tick	tick	NOUN
finefocus-683	17	21	populations	population	NOUN
finefocus-683	17	22	together	together	ADV
finefocus-683	17	23	with	with	ADP
finefocus-683	17	24	a	a	DET
finefocus-683	17	25	rapid	rapid	ADJ
finefocus-683	17	26	and	and	CCONJ
finefocus-683	17	27	competent	competent	ADJ
finefocus-683	17	28	diagnosis	diagnosis	NOUN
finefocus-683	17	29	program	program	NOUN
finefocus-683	17	30	when	when	SCONJ
finefocus-683	17	31	an	an	DET
finefocus-683	17	32	outbreak	outbreak	NOUN
finefocus-683	17	33	is	be	AUX
finefocus-683	17	34	suspected	suspect	VERB
finefocus-683	17	35	.	.	PUNCT
finefocus-683	18	1	in	in	ADP
finefocus-683	18	2	addition	addition	NOUN
finefocus-683	18	3	,	,	PUNCT
finefocus-683	18	4	strict	strict	ADJ
finefocus-683	18	5	sanitary	sanitary	NOUN
finefocus-683	18	6	control	control	NOUN
finefocus-683	18	7	procedures	procedure	NOUN
finefocus-683	18	8	must	must	AUX
finefocus-683	18	9	be	be	AUX
finefocus-683	18	10	implemented	implement	VERB
finefocus-683	18	11	to	to	PART
finefocus-683	18	12	reduce	reduce	VERB
finefocus-683	18	13	the	the	DET
finefocus-683	18	14	possibility	possibility	NOUN
finefocus-683	18	15	of	of	ADP
finefocus-683	18	16	infected	infected	ADJ
finefocus-683	18	17	wild	wild	ADJ
finefocus-683	18	18	hosts	host	NOUN
finefocus-683	18	19	interacting	interact	VERB
finefocus-683	18	20	with	with	ADP
finefocus-683	18	21	domestic	domestic	ADJ
finefocus-683	18	22	pigs	pig	NOUN
finefocus-683	18	23	(	(	PUNCT
finefocus-683	18	24	7	7	NUM
finefocus-683	18	25	)	)	PUNCT
finefocus-683	18	26	.	.	PUNCT
finefocus-683	19	1	when	when	SCONJ
finefocus-683	19	2	outbreaks	outbreak	NOUN
finefocus-683	19	3	occur	occur	VERB
finefocus-683	19	4	,	,	PUNCT
finefocus-683	19	5	currently	currently	ADV
finefocus-683	19	6	,	,	PUNCT
finefocus-683	19	7	the	the	DET
finefocus-683	19	8	only	only	ADJ
finefocus-683	19	9	effective	effective	ADJ
finefocus-683	19	10	response	response	NOUN
finefocus-683	19	11	is	be	AUX
finefocus-683	19	12	culling	cull	VERB
finefocus-683	19	13	of	of	ADP
finefocus-683	19	14	an	an	DET
finefocus-683	19	15	infected	infected	ADJ
finefocus-683	19	16	herd	herd	NOUN
finefocus-683	19	17	and	and	CCONJ
finefocus-683	19	18	the	the	DET
finefocus-683	19	19	imposition	imposition	NOUN
finefocus-683	19	20	of	of	ADP
finefocus-683	19	21	a	a	DET
finefocus-683	19	22	ban	ban	NOUN
finefocus-683	19	23	on	on	ADP
finefocus-683	19	24	the	the	DET
finefocus-683	19	25	movement	movement	NOUN
finefocus-683	19	26	of	of	ADP
finefocus-683	19	27	adjacent	adjacent	ADJ
finefocus-683	19	28	herds	herd	NOUN
finefocus-683	19	29	(	(	PUNCT
finefocus-683	19	30	2	2	NUM
finefocus-683	19	31	)	)	PUNCT
finefocus-683	19	32	.	.	PUNCT
finefocus-683	20	1	this	this	PRON
finefocus-683	20	2	produces	produce	VERB
finefocus-683	20	3	serious	serious	ADJ
finefocus-683	20	4	economic	economic	ADJ
finefocus-683	20	5	problems	problem	NOUN
finefocus-683	20	6	for	for	ADP
finefocus-683	20	7	the	the	DET
finefocus-683	20	8	farmers	farmer	NOUN
finefocus-683	20	9	and	and	CCONJ
finefocus-683	20	10	may	may	AUX
finefocus-683	20	11	incentivize	incentivize	VERB
finefocus-683	20	12	noncompliance	noncompliance	NOUN
finefocus-683	20	13	.	.	PUNCT
finefocus-683	21	1	clearly	clearly	ADV
finefocus-683	21	2	,	,	PUNCT
finefocus-683	21	3	an	an	DET
finefocus-683	21	4	unhindered	unhindered	ADJ
finefocus-683	21	5	pork	pork	NOUN
finefocus-683	21	6	trade	trade	NOUN
finefocus-683	21	7	would	would	AUX
finefocus-683	21	8	be	be	AUX
finefocus-683	21	9	very	very	ADV
finefocus-683	21	10	beneficial	beneficial	ADJ
finefocus-683	21	11	and	and	CCONJ
finefocus-683	21	12	benefit	benefit	VERB
finefocus-683	21	13	a	a	DET
finefocus-683	21	14	large	large	ADJ
finefocus-683	21	15	proportion	proportion	NOUN
finefocus-683	21	16	of	of	ADP
finefocus-683	21	17	the	the	DET
finefocus-683	21	18	population	population	NOUN
finefocus-683	21	19	.	.	PUNCT
finefocus-683	22	1	between	between	ADP
finefocus-683	22	2	2014	2014	NUM
finefocus-683	22	3	and	and	CCONJ
finefocus-683	22	4	2015	2015	NUM
finefocus-683	22	5	,	,	PUNCT
finefocus-683	22	6	close	close	ADJ
finefocus-683	22	7	to	to	PART
finefocus-683	22	8	$	$	SYM
finefocus-683	22	9	55	55	NUM
finefocus-683	22	10	million	million	NUM
finefocus-683	22	11	was	be	AUX
finefocus-683	22	12	spent	spend	VERB
finefocus-683	22	13	on	on	ADP
finefocus-683	22	14	asfv	asfv	NOUN
finefocus-683	22	15	prevention	prevention	NOUN
finefocus-683	22	16	in	in	ADP
finefocus-683	22	17	the	the	DET
finefocus-683	22	18	baltic	baltic	ADJ
finefocus-683	22	19	states	state	NOUN
finefocus-683	22	20	alone	alone	ADV
finefocus-683	22	21	,	,	PUNCT
finefocus-683	22	22	which	which	PRON
finefocus-683	22	23	was	be	AUX
finefocus-683	22	24	considered	consider	VERB
finefocus-683	22	25	to	to	PART
finefocus-683	22	26	have	have	AUX
finefocus-683	22	27	prevented	prevent	VERB
finefocus-683	22	28	us$4.5	us$4.5	PROPN
finefocus-683	22	29	billion	billion	NUM
finefocus-683	22	30	in	in	ADP
finefocus-683	22	31	potential	potential	ADJ
finefocus-683	22	32	losses	loss	NOUN
finefocus-683	22	33	(	(	PUNCT
finefocus-683	22	34	7	7	NUM
finefocus-683	22	35	)	)	PUNCT
finefocus-683	22	36	.	.	PUNCT
finefocus-683	23	1	sixteen	sixteen	NUM
finefocus-683	23	2	full	full	ADJ
finefocus-683	23	3	asfv	asfv	NOUN
finefocus-683	23	4	genomes	genome	NOUN
finefocus-683	23	5	have	have	AUX
finefocus-683	23	6	been	be	AUX
finefocus-683	23	7	sequenced	sequence	VERB
finefocus-683	23	8	to	to	ADP
finefocus-683	23	9	date	date	NOUN
finefocus-683	23	10	,	,	PUNCT
finefocus-683	23	11	and	and	CCONJ
finefocus-683	23	12	more	more	ADJ
finefocus-683	23	13	than	than	ADP
finefocus-683	23	14	100	100	NUM
finefocus-683	23	15	will	will	AUX
finefocus-683	23	16	be	be	AUX
finefocus-683	23	17	sequenced	sequence	VERB
finefocus-683	23	18	in	in	ADP
finefocus-683	23	19	the	the	DET
finefocus-683	23	20	next	next	ADJ
finefocus-683	23	21	2	2	NUM
finefocus-683	23	22	-	-	SYM
finefocus-683	23	23	3	3	NUM
finefocus-683	23	24	years	year	NOUN
finefocus-683	23	25	(	(	PUNCT
finefocus-683	23	26	e.	e.	PROPN
finefocus-683	23	27	okoth	okoth	PROPN
finefocus-683	23	28	,	,	PUNCT
finefocus-683	23	29	personal	personal	ADJ
finefocus-683	23	30	communication	communication	NOUN
finefocus-683	23	31	)	)	PUNCT
finefocus-683	23	32	.	.	PUNCT
finefocus-683	24	1	the	the	DET
finefocus-683	24	2	availability	availability	NOUN
finefocus-683	24	3	of	of	ADP
finefocus-683	24	4	these	these	DET
finefocus-683	24	5	genome	genome	NOUN
finefocus-683	24	6	sequences	sequence	NOUN
finefocus-683	24	7	is	be	AUX
finefocus-683	24	8	important	important	ADJ
finefocus-683	24	9	because	because	SCONJ
finefocus-683	24	10	comparative	comparative	ADJ
finefocus-683	24	11	genomics	genomics	NOUN
finefocus-683	24	12	analyses	analysis	NOUN
finefocus-683	24	13	will	will	AUX
finefocus-683	24	14	allow	allow	VERB
finefocus-683	24	15	researchers	researcher	NOUN
finefocus-683	24	16	to	to	PART
finefocus-683	24	17	better	well	ADV
finefocus-683	24	18	correlate	correlate	VERB
finefocus-683	24	19	gene	gene	NOUN
finefocus-683	24	20	content	content	NOUN
finefocus-683	24	21	and	and	CCONJ
finefocus-683	24	22	amino	amino	NOUN
finefocus-683	24	23	acid	acid	NOUN
finefocus-683	24	24	sequence	sequence	NOUN
finefocus-683	24	25	variation	variation	NOUN
finefocus-683	24	26	with	with	ADP
finefocus-683	24	27	virulence	virulence	NOUN
finefocus-683	24	28	and	and	CCONJ
finefocus-683	24	29	antigenic	antigenic	ADJ
finefocus-683	24	30	variation	variation	NOUN
finefocus-683	24	31	.	.	PUNCT
finefocus-683	25	1	however	however	ADV
finefocus-683	25	2	,	,	PUNCT
finefocus-683	25	3	all	all	DET
finefocus-683	25	4	asfv	asfv	NOUN
finefocus-683	25	5	isolates	isolate	NOUN
finefocus-683	25	6	have	have	VERB
finefocus-683	25	7	at	at	ADV
finefocus-683	25	8	least	least	ADV
finefocus-683	25	9	5	5	NUM
finefocus-683	25	10	multigene	multigene	ADJ
finefocus-683	25	11	families	family	NOUN
finefocus-683	25	12	(	(	PUNCT
finefocus-683	25	13	mgf	mgf	PROPN
finefocus-683	25	14	)	)	PUNCT
finefocus-683	25	15	that	that	PRON
finefocus-683	25	16	are	be	AUX
finefocus-683	25	17	made	make	VERB
finefocus-683	25	18	up	up	ADP
finefocus-683	25	19	of	of	ADP
finefocus-683	25	20	sets	set	NOUN
finefocus-683	25	21	of	of	ADP
finefocus-683	25	22	paralogs	paralog	NOUN
finefocus-683	25	23	,	,	PUNCT
finefocus-683	25	24	which	which	PRON
finefocus-683	25	25	are	be	AUX
finefocus-683	25	26	frequently	frequently	ADV
finefocus-683	25	27	but	but	CCONJ
finefocus-683	25	28	not	not	PART
finefocus-683	25	29	always	always	ADV
finefocus-683	25	30	arranged	arrange	VERB
finefocus-683	25	31	in	in	ADP
finefocus-683	25	32	tandem	tandem	NOUN
finefocus-683	25	33	.	.	PUNCT
finefocus-683	26	1	not	not	PART
finefocus-683	26	2	only	only	ADV
finefocus-683	26	3	do	do	AUX
finefocus-683	26	4	the	the	DET
finefocus-683	26	5	different	different	ADJ
finefocus-683	26	6	viruses	virus	NOUN
finefocus-683	26	7	have	have	VERB
finefocus-683	26	8	different	different	ADJ
finefocus-683	26	9	numbers	number	NOUN
finefocus-683	26	10	of	of	ADP
finefocus-683	26	11	these	these	DET
finefocus-683	26	12	paralogs	paralog	NOUN
finefocus-683	26	13	,	,	PUNCT
finefocus-683	26	14	but	but	CCONJ
finefocus-683	26	15	they	they	PRON
finefocus-683	26	16	frequently	frequently	ADV
finefocus-683	26	17	have	have	VERB
finefocus-683	26	18	indels	indel	NOUN
finefocus-683	26	19	that	that	PRON
finefocus-683	26	20	remove	remove	VERB
finefocus-683	26	21	multiple	multiple	ADJ
finefocus-683	26	22	genes	gene	NOUN
finefocus-683	26	23	and	and	CCONJ
finefocus-683	26	24	partial	partial	ADJ
finefocus-683	26	25	genes	gene	NOUN
finefocus-683	26	26	resulting	result	VERB
finefocus-683	26	27	in	in	ADP
finefocus-683	26	28	some	some	DET
finefocus-683	26	29	gene	gene	NOUN
finefocus-683	26	30	fusions	fusion	NOUN
finefocus-683	26	31	(	(	PUNCT
finefocus-683	26	32	4,6,14	4,6,14	NUM
finefocus-683	26	33	)	)	PUNCT
finefocus-683	26	34	.	.	PUNCT
finefocus-683	27	1	consequently	consequently	ADV
finefocus-683	27	2	,	,	PUNCT
finefocus-683	27	3	when	when	SCONJ
finefocus-683	27	4	these	these	DET
finefocus-683	27	5	viral	viral	ADJ
finefocus-683	27	6	genomes	genome	NOUN
finefocus-683	27	7	are	be	AUX
finefocus-683	27	8	aligned	align	VERB
finefocus-683	27	9	by	by	ADP
finefocus-683	27	10	software	software	NOUN
finefocus-683	27	11	tools	tool	NOUN
finefocus-683	27	12	these	these	DET
finefocus-683	27	13	regions	region	NOUN
finefocus-683	27	14	are	be	AUX
finefocus-683	27	15	not	not	PART
finefocus-683	27	16	aligned	align	VERB
finefocus-683	27	17	correctly	correctly	ADV
finefocus-683	27	18	.	.	PUNCT
finefocus-683	28	1	the	the	DET
finefocus-683	28	2	problem	problem	NOUN
finefocus-683	28	3	is	be	AUX
finefocus-683	28	4	made	make	VERB
finefocus-683	28	5	more	more	ADV
finefocus-683	28	6	complicated	complicated	ADJ
finefocus-683	28	7	by	by	ADP
finefocus-683	28	8	the	the	DET
finefocus-683	28	9	fact	fact	NOUN
finefocus-683	28	10	that	that	SCONJ
finefocus-683	28	11	the	the	DET
finefocus-683	28	12	individual	individual	ADJ
finefocus-683	28	13	mgfs	mgfs	NOUN
finefocus-683	28	14	have	have	AUX
finefocus-683	28	15	sometimes	sometimes	ADV
finefocus-683	28	16	been	be	AUX
finefocus-683	28	17	mis	mi	NOUN
finefocus-683	28	18	-	-	ADJ
finefocus-683	28	19	annotated	annotated	ADJ
finefocus-683	28	20	due	due	ADJ
finefocus-683	28	21	to	to	ADP
finefocus-683	28	22	failure	failure	NOUN
finefocus-683	28	23	to	to	PART
finefocus-683	28	24	identify	identify	VERB
finefocus-683	28	25	the	the	DET
finefocus-683	28	26	correct	correct	ADJ
finefocus-683	28	27	ortholog	ortholog	NOUN
finefocus-683	28	28	groups	group	NOUN
finefocus-683	28	29	within	within	ADP
finefocus-683	28	30	the	the	DET
finefocus-683	28	31	sets	set	NOUN
finefocus-683	28	32	of	of	ADP
finefocus-683	28	33	paralogs	paralog	NOUN
finefocus-683	28	34	.	.	PUNCT
finefocus-683	29	1	correct	correct	ADJ
finefocus-683	29	2	identification	identification	NOUN
finefocus-683	29	3	of	of	ADP
finefocus-683	29	4	the	the	DET
finefocus-683	29	5	members	member	NOUN
finefocus-683	29	6	of	of	ADP
finefocus-683	29	7	these	these	DET
finefocus-683	29	8	mgfs	mgfs	NOUN
finefocus-683	29	9	is	be	AUX
finefocus-683	29	10	especially	especially	ADV
finefocus-683	29	11	important	important	ADJ
finefocus-683	29	12	because	because	SCONJ
finefocus-683	29	13	these	these	DET
finefocus-683	29	14	genes	gene	NOUN
finefocus-683	29	15	have	have	AUX
finefocus-683	29	16	been	be	AUX
finefocus-683	29	17	linked	link	VERB
finefocus-683	29	18	with	with	ADP
finefocus-683	29	19	virus	virus	NOUN
finefocus-683	29	20	virulence	virulence	NOUN
finefocus-683	29	21	(	(	PUNCT
finefocus-683	29	22	6	6	NUM
finefocus-683	29	23	)	)	PUNCT
finefocus-683	29	24	.	.	PUNCT
finefocus-683	30	1	the	the	DET
finefocus-683	30	2	challenge	challenge	NOUN
finefocus-683	30	3	of	of	ADP
finefocus-683	30	4	developing	develop	VERB
finefocus-683	30	5	an	an	DET
finefocus-683	30	6	effective	effective	ADJ
finefocus-683	30	7	vaccine	vaccine	NOUN
finefocus-683	30	8	stems	stem	VERB
finefocus-683	30	9	,	,	PUNCT
finefocus-683	30	10	in	in	ADP
finefocus-683	30	11	part	part	NOUN
finefocus-683	30	12	,	,	PUNCT
finefocus-683	30	13	from	from	ADP
finefocus-683	30	14	the	the	DET
finefocus-683	30	15	high	high	ADJ
finefocus-683	30	16	antigenic	antigenic	ADJ
finefocus-683	30	17	diversity	diversity	NOUN
finefocus-683	30	18	distributed	distribute	VERB
finefocus-683	30	19	among	among	ADP
finefocus-683	30	20	the	the	DET
finefocus-683	30	21	different	different	ADJ
finefocus-683	30	22	strains	strain	NOUN
finefocus-683	30	23	of	of	ADP
finefocus-683	30	24	asfv	asfv	NOUN
finefocus-683	30	25	and	and	CCONJ
finefocus-683	30	26	therefore	therefore	ADV
finefocus-683	30	27	from	from	ADP
finefocus-683	30	28	the	the	DET
finefocus-683	30	29	genomic	genomic	ADJ
finefocus-683	30	30	variation	variation	NOUN
finefocus-683	30	31	.	.	PUNCT
finefocus-683	31	1	although	although	SCONJ
finefocus-683	31	2	it	it	PRON
finefocus-683	31	3	is	be	AUX
finefocus-683	31	4	possible	possible	ADJ
finefocus-683	31	5	to	to	PART
finefocus-683	31	6	induce	induce	VERB
finefocus-683	31	7	immunity	immunity	NOUN
finefocus-683	31	8	in	in	ADP
finefocus-683	31	9	pigs	pig	NOUN
finefocus-683	31	10	that	that	PRON
finefocus-683	31	11	protects	protect	VERB
finefocus-683	31	12	from	from	ADP
finefocus-683	31	13	challenge	challenge	NOUN
finefocus-683	31	14	with	with	ADP
finefocus-683	31	15	a	a	DET
finefocus-683	31	16	homologous	homologous	ADJ
finefocus-683	31	17	genotype	genotype	NOUN
finefocus-683	31	18	,	,	PUNCT
finefocus-683	31	19	the	the	DET
finefocus-683	31	20	african	african	ADJ
finefocus-683	31	21	swine	swine	ADJ
finefocus-683	31	22	fever	fever	NOUN
finefocus-683	31	23	virus	virus	NOUN
finefocus-683	31	24	•	•	NOUN
finefocus-683	31	25	157	157	NUM
finefocus-683	31	26	figure	figure	NOUN
finefocus-683	31	27	1	1	NUM
finefocus-683	31	28	.	.	PUNCT
finefocus-683	31	29	maximum	maximum	ADJ
finefocus-683	31	30	likelihood	likelihood	NOUN
finefocus-683	31	31	phylogenetic	phylogenetic	ADJ
finefocus-683	31	32	tree	tree	NOUN
finefocus-683	31	33	of	of	ADP
finefocus-683	31	34	mgf	mgf	PROPN
finefocus-683	31	35	505	505	NUM
finefocus-683	31	36	dna	dna	PROPN
finefocus-683	31	37	sequences	sequence	NOUN
finefocus-683	31	38	was	be	AUX
finefocus-683	31	39	created	create	VERB
finefocus-683	31	40	with	with	ADP
finefocus-683	31	41	raxml	raxml	NOUN
finefocus-683	31	42	using	use	VERB
finefocus-683	31	43	the	the	DET
finefocus-683	31	44	gtrgamma	gtrgamma	NOUN
finefocus-683	31	45	base	base	NOUN
finefocus-683	31	46	substitution	substitution	NOUN
finefocus-683	31	47	model	model	NOUN
finefocus-683	31	48	.	.	PUNCT
finefocus-683	32	1	sequences	sequence	NOUN
finefocus-683	32	2	were	be	AUX
finefocus-683	32	3	aligned	align	VERB
finefocus-683	32	4	with	with	ADP
finefocus-683	32	5	mafft	mafft	NOUN
finefocus-683	32	6	and	and	CCONJ
finefocus-683	32	7	trees	tree	NOUN
finefocus-683	32	8	visualized	visualize	VERB
finefocus-683	32	9	using	use	VERB
finefocus-683	32	10	mega7	mega7	NOUN
finefocus-683	32	11	.	.	PUNCT
finefocus-683	33	1	156	156	NUM
finefocus-683	33	2	•	•	NUM
finefocus-683	33	3	fine	fine	ADJ
finefocus-683	33	4	focus	focus	NOUN
finefocus-683	33	5	,	,	PUNCT
finefocus-683	33	6	vol	vol	NOUN
finefocus-683	33	7	.	.	NOUN
finefocus-683	33	8	3	3	NUM
finefocus-683	33	9	(	(	PUNCT
finefocus-683	33	10	2	2	NUM
finefocus-683	33	11	)	)	PUNCT
finefocus-683	33	12	generation	generation	NOUN
finefocus-683	33	13	of	of	ADP
finefocus-683	33	14	protection	protection	NOUN
finefocus-683	33	15	against	against	ADP
finefocus-683	33	16	a	a	DET
finefocus-683	33	17	heterologous	heterologous	ADJ
finefocus-683	33	18	genotype	genotype	NOUN
finefocus-683	33	19	has	have	AUX
finefocus-683	33	20	proved	prove	VERB
finefocus-683	33	21	unreliable	unreliable	ADJ
finefocus-683	33	22	(	(	PUNCT
finefocus-683	33	23	15	15	NUM
finefocus-683	33	24	)	)	PUNCT
finefocus-683	33	25	.	.	PUNCT
finefocus-683	34	1	in	in	ADP
finefocus-683	34	2	fact	fact	NOUN
finefocus-683	34	3	,	,	PUNCT
finefocus-683	34	4	vaccination	vaccination	NOUN
finefocus-683	34	5	does	do	AUX
finefocus-683	34	6	not	not	PART
finefocus-683	34	7	always	always	ADV
finefocus-683	34	8	adequately	adequately	ADV
finefocus-683	34	9	protect	protect	VERB
finefocus-683	34	10	against	against	ADP
finefocus-683	34	11	viruses	virus	NOUN
finefocus-683	34	12	of	of	ADP
finefocus-683	34	13	the	the	DET
finefocus-683	34	14	same	same	ADJ
finefocus-683	34	15	genotype	genotype	NOUN
finefocus-683	34	16	(	(	PUNCT
finefocus-683	34	17	19	19	NUM
finefocus-683	34	18	)	)	PUNCT
finefocus-683	34	19	.	.	PUNCT
finefocus-683	35	1	here	here	ADV
finefocus-683	35	2	we	we	PRON
finefocus-683	35	3	describe	describe	VERB
finefocus-683	35	4	the	the	DET
finefocus-683	35	5	reannotation	reannotation	NOUN
finefocus-683	35	6	of	of	ADP
finefocus-683	35	7	the	the	DET
finefocus-683	35	8	asfv	asfv	NOUN
finefocus-683	35	9	mgfs	mgfs	NOUN
finefocus-683	35	10	using	use	VERB
finefocus-683	35	11	a	a	DET
finefocus-683	35	12	common	common	ADJ
finefocus-683	35	13	nomenclature	nomenclature	NOUN
finefocus-683	35	14	that	that	PRON
finefocus-683	35	15	will	will	AUX
finefocus-683	35	16	facilitate	facilitate	VERB
finefocus-683	35	17	future	future	ADJ
finefocus-683	35	18	asfv	asfv	NOUN
finefocus-683	35	19	genome	genome	NOUN
finefocus-683	35	20	comparisons	comparison	NOUN
finefocus-683	35	21	and	and	CCONJ
finefocus-683	35	22	provide	provide	VERB
finefocus-683	35	23	clarity	clarity	NOUN
finefocus-683	35	24	for	for	ADP
finefocus-683	35	25	the	the	DET
finefocus-683	35	26	discussion	discussion	NOUN
finefocus-683	35	27	of	of	ADP
finefocus-683	35	28	the	the	DET
finefocus-683	35	29	differences	difference	NOUN
finefocus-683	35	30	between	between	ADP
finefocus-683	35	31	viral	viral	ADJ
finefocus-683	35	32	gene	gene	NOUN
finefocus-683	35	33	sets	set	NOUN
finefocus-683	35	34	.	.	PUNCT
finefocus-683	36	1	methods	method	NOUN
finefocus-683	36	2	data	datum	NOUN
finefocus-683	36	3	set	set	VERB
finefocus-683	36	4	genomes	genome	NOUN
finefocus-683	36	5	of	of	ADP
finefocus-683	36	6	the	the	DET
finefocus-683	36	7	following	follow	VERB
finefocus-683	36	8	asfv	asfv	NOUN
finefocus-683	36	9	isolates	isolate	NOUN
finefocus-683	36	10	were	be	AUX
finefocus-683	36	11	used	use	VERB
finefocus-683	36	12	,	,	PUNCT
finefocus-683	36	13	genbank	genbank	NOUN
finefocus-683	36	14	accession	accession	NOUN
finefocus-683	36	15	numbers	number	NOUN
finefocus-683	36	16	are	be	AUX
finefocus-683	36	17	given	give	VERB
finefocus-683	36	18	in	in	ADP
finefocus-683	36	19	parentheses	parenthesis	NOUN
finefocus-683	36	20	:	:	PUNCT
finefocus-683	36	21	asfv	asfv	NOUN
finefocus-683	36	22	-	-	PUNCT
finefocus-683	36	23	benin_97_1	benin_97_1	PROPN
finefocus-683	36	24	(	(	PUNCT
finefocus-683	36	25	am712239	am712239	PROPN
finefocus-683	36	26	)	)	PUNCT
finefocus-683	36	27	;	;	PUNCT
finefocus-683	36	28	asfv	asfv	NOUN
finefocus-683	36	29	-	-	PUNCT
finefocus-683	36	30	l60	l60	PROPN
finefocus-683	36	31	(	(	PUNCT
finefocus-683	36	32	km262844	km262844	PROPN
finefocus-683	36	33	)	)	PUNCT
finefocus-683	36	34	;	;	PUNCT
finefocus-683	36	35	asfv	asfv	NOUN
finefocus-683	36	36	-	-	PUNCT
finefocus-683	36	37	e75	e75	PROPN
finefocus-683	36	38	(	(	PUNCT
finefocus-683	36	39	fn557520	fn557520	PROPN
finefocus-683	36	40	)	)	PUNCT
finefocus-683	36	41	;	;	PUNCT
finefocus-683	36	42	asfv	asfv	NOUN
finefocus-683	36	43	-	-	PUNCT
finefocus-683	36	44	ourt_88_3	ourt_88_3	PROPN
finefocus-683	36	45	(	(	PUNCT
finefocus-683	36	46	am712240	am712240	NOUN
finefocus-683	36	47	)	)	PUNCT
finefocus-683	36	48	;	;	PUNCT
finefocus-683	36	49	asfv	asfv	NOUN
finefocus-683	36	50	-	-	PUNCT
finefocus-683	36	51	nhv	nhv	PROPN
finefocus-683	36	52	(	(	PUNCT
finefocus-683	36	53	km262845	km262845	PROPN
finefocus-683	36	54	)	)	PUNCT
finefocus-683	36	55	;	;	PUNCT
finefocus-683	36	56	asfv	asfv	NOUN
finefocus-683	36	57	-	-	PUNCT
finefocus-683	36	58	mkuzi_1979	mkuzi_1979	NOUN
finefocus-683	36	59	(	(	PUNCT
finefocus-683	36	60	ay261362	ay261362	PROPN
finefocus-683	36	61	)	)	PUNCT
finefocus-683	36	62	;	;	PUNCT
finefocus-683	36	63	asfv	asfv	NOUN
finefocus-683	36	64	-	-	PUNCT
finefocus-683	36	65	ba71v	ba71v	NOUN
finefocus-683	36	66	(	(	PUNCT
finefocus-683	36	67	u18466	u18466	PROPN
finefocus-683	36	68	)	)	PUNCT
finefocus-683	36	69	;	;	PUNCT
finefocus-683	36	70	asfv	asfv	NOUN
finefocus-683	36	71	-	-	PUNCT
finefocus-683	36	72	georgia_2007/1	georgia_2007/1	PROPN
finefocus-683	36	73	(	(	PUNCT
finefocus-683	36	74	fr682468	fr682468	PROPN
finefocus-683	36	75	)	)	PUNCT
finefocus-683	36	76	;	;	PUNCT
finefocus-683	36	77	asfv	asfv	NOUN
finefocus-683	36	78	-	-	PUNCT
finefocus-683	36	79	pretorisuskop_96_4	pretorisuskop_96_4	PROPN
finefocus-683	36	80	(	(	PUNCT
finefocus-683	36	81	ay261363	ay261363	PROPN
finefocus-683	36	82	)	)	PUNCT
finefocus-683	36	83	;	;	PUNCT
finefocus-683	36	84	asfvwarmbaths	asfvwarmbath	NOUN
finefocus-683	36	85	(	(	PUNCT
finefocus-683	36	86	ay261365	ay261365	PROPN
finefocus-683	36	87	)	)	PUNCT
finefocus-683	36	88	;	;	PUNCT
finefocus-683	36	89	asfv	asfv	NOUN
finefocus-683	36	90	-	-	PUNCT
finefocus-683	36	91	warthog	warthog	NOUN
finefocus-683	36	92	(	(	PUNCT
finefocus-683	36	93	ay261366	ay261366	PROPN
finefocus-683	36	94	)	)	PUNCT
finefocus-683	36	95	;	;	PUNCT
finefocus-683	36	96	asfv	asfv	NOUN
finefocus-683	36	97	-	-	PUNCT
finefocus-683	36	98	tengani62	tengani62	NOUN
finefocus-683	36	99	(	(	PUNCT
finefocus-683	36	100	ay261364	ay261364	PROPN
finefocus-683	36	101	)	)	PUNCT
finefocus-683	36	102	;	;	PUNCT
finefocus-683	36	103	asfv	asfv	NOUN
finefocus-683	36	104	-	-	PUNCT
finefocus-683	36	105	mwi_lil_20_1_1983	mwi_lil_20_1_1983	NOUN
finefocus-683	36	106	(	(	PUNCT
finefocus-683	36	107	ay261361	ay261361	NOUN
finefocus-683	36	108	)	)	PUNCT
finefocus-683	36	109	;	;	PUNCT
finefocus-683	36	110	asfv	asfv	NOUN
finefocus-683	36	111	-	-	PUNCT
finefocus-683	36	112	ken05_tk1	ken05_tk1	PROPN
finefocus-683	36	113	(	(	PUNCT
finefocus-683	36	114	km111294	km111294	PROPN
finefocus-683	36	115	)	)	PUNCT
finefocus-683	36	116	;	;	PUNCT
finefocus-683	36	117	asfv	asfv	NOUN
finefocus-683	36	118	-	-	PUNCT
finefocus-683	36	119	ken06	ken06	PROPN
finefocus-683	36	120	(	(	PUNCT
finefocus-683	36	121	km111295	km111295	PROPN
finefocus-683	36	122	)	)	PUNCT
finefocus-683	36	123	;	;	PUNCT
finefocus-683	36	124	asfv	asfv	PROPN
finefocus-683	36	125	-	-	PUNCT
finefocus-683	36	126	ken_1950	ken_1950	PROPN
finefocus-683	36	127	(	(	PUNCT
finefocus-683	36	128	ay261360	ay261360	PROPN
finefocus-683	36	129	)	)	PUNCT
finefocus-683	36	130	.	.	PUNCT
finefocus-683	37	1	phylogenetic	phylogenetic	ADJ
finefocus-683	37	2	tree	tree	NOUN
finefocus-683	37	3	and	and	CCONJ
finefocus-683	37	4	dotplot	dotplot	NOUN
finefocus-683	37	5	construction	construction	NOUN
finefocus-683	37	6	a	a	DET
finefocus-683	37	7	multiple	multiple	ADJ
finefocus-683	37	8	sequence	sequence	NOUN
finefocus-683	37	9	alignment	alignment	NOUN
finefocus-683	37	10	(	(	PUNCT
finefocus-683	37	11	msa	msa	PROPN
finefocus-683	37	12	)	)	PUNCT
finefocus-683	37	13	of	of	ADP
finefocus-683	37	14	the	the	DET
finefocus-683	37	15	16	16	NUM
finefocus-683	37	16	complete	complete	ADJ
finefocus-683	37	17	asfv	asfv	NOUN
finefocus-683	37	18	genomes	genome	NOUN
finefocus-683	37	19	was	be	AUX
finefocus-683	37	20	generated	generate	VERB
finefocus-683	37	21	using	use	VERB
finefocus-683	37	22	mafft	mafft	PROPN
finefocus-683	37	23	(	(	PUNCT
finefocus-683	37	24	10	10	NUM
finefocus-683	37	25	)	)	PUNCT
finefocus-683	37	26	.	.	PUNCT
finefocus-683	38	1	base	base	NOUN
finefocus-683	38	2	-	-	PUNCT
finefocus-683	38	3	by	by	ADP
finefocus-683	38	4	-	-	PUNCT
finefocus-683	38	5	base	base	NOUN
finefocus-683	38	6	(	(	PUNCT
finefocus-683	38	7	bbb	bbb	NOUN
finefocus-683	38	8	;	;	PUNCT
finefocus-683	38	9	(	(	PUNCT
finefocus-683	38	10	8)	8)	NUM
finefocus-683	38	11	)	)	PUNCT
finefocus-683	38	12	was	be	AUX
finefocus-683	38	13	used	use	VERB
finefocus-683	38	14	to	to	PART
finefocus-683	38	15	visualize	visualize	VERB
finefocus-683	38	16	the	the	DET
finefocus-683	38	17	msa	msa	PROPN
finefocus-683	38	18	and	and	CCONJ
finefocus-683	38	19	highlight	highlight	VERB
finefocus-683	38	20	the	the	DET
finefocus-683	38	21	differences	difference	NOUN
finefocus-683	38	22	between	between	ADP
finefocus-683	38	23	the	the	DET
finefocus-683	38	24	genomes	genome	NOUN
finefocus-683	38	25	.	.	PUNCT
finefocus-683	39	1	maximum	maximum	ADJ
finefocus-683	39	2	-	-	PUNCT
finefocus-683	39	3	likelihood	likelihood	NOUN
finefocus-683	39	4	phylogenetic	phylogenetic	ADJ
finefocus-683	39	5	trees	tree	NOUN
finefocus-683	39	6	were	be	AUX
finefocus-683	39	7	constructed	construct	VERB
finefocus-683	39	8	using	use	VERB
finefocus-683	39	9	raxml	raxml	NOUN
finefocus-683	39	10	(	(	PUNCT
finefocus-683	39	11	16	16	NUM
finefocus-683	39	12	)	)	PUNCT
finefocus-683	39	13	under	under	ADP
finefocus-683	39	14	the	the	DET
finefocus-683	39	15	gtrgamma	gtrgamma	NOUN
finefocus-683	39	16	base	base	PROPN
finefocus-683	39	17	substitution	substitution	NOUN
finefocus-683	39	18	model	model	NOUN
finefocus-683	39	19	using	use	VERB
finefocus-683	39	20	1000	1000	NUM
finefocus-683	39	21	bootstrap	bootstrap	NOUN
finefocus-683	39	22	replicates	replicate	NOUN
finefocus-683	39	23	.	.	PUNCT
finefocus-683	40	1	mega7	mega7	NOUN
finefocus-683	40	2	(	(	PUNCT
finefocus-683	40	3	11	11	NUM
finefocus-683	40	4	)	)	PUNCT
finefocus-683	40	5	was	be	AUX
finefocus-683	40	6	used	use	VERB
finefocus-683	40	7	to	to	PART
finefocus-683	40	8	visualize	visualize	VERB
finefocus-683	40	9	and	and	CCONJ
finefocus-683	40	10	manipulate	manipulate	VERB
finefocus-683	40	11	the	the	DET
finefocus-683	40	12	phylogenetic	phylogenetic	ADJ
finefocus-683	40	13	tree	tree	NOUN
finefocus-683	40	14	output	output	NOUN
finefocus-683	40	15	.	.	PUNCT
finefocus-683	41	1	since	since	SCONJ
finefocus-683	41	2	alignment	alignment	NOUN
finefocus-683	41	3	tools	tool	NOUN
finefocus-683	41	4	such	such	ADJ
finefocus-683	41	5	as	as	ADP
finefocus-683	41	6	mafft	mafft	PROPN
finefocus-683	41	7	treat	treat	VERB
finefocus-683	41	8	genomes	genome	NOUN
finefocus-683	41	9	as	as	ADP
finefocus-683	41	10	linear	linear	ADJ
finefocus-683	41	11	syntenic	syntenic	ADJ
finefocus-683	41	12	sequences	sequence	NOUN
finefocus-683	41	13	,	,	PUNCT
finefocus-683	41	14	they	they	PRON
finefocus-683	41	15	are	be	AUX
finefocus-683	41	16	unable	unable	ADJ
finefocus-683	41	17	to	to	PART
finefocus-683	41	18	accurately	accurately	ADV
finefocus-683	41	19	display	display	VERB
finefocus-683	41	20	any	any	DET
finefocus-683	41	21	sequence	sequence	NOUN
finefocus-683	41	22	transpositions	transposition	NOUN
finefocus-683	41	23	.	.	PUNCT
finefocus-683	42	1	similarly	similarly	ADV
finefocus-683	42	2	,	,	PUNCT
finefocus-683	42	3	it	it	PRON
finefocus-683	42	4	can	can	AUX
finefocus-683	42	5	be	be	AUX
finefocus-683	42	6	difficult	difficult	ADJ
finefocus-683	42	7	to	to	PART
finefocus-683	42	8	assess	assess	VERB
finefocus-683	42	9	small	small	ADJ
finefocus-683	42	10	differences	difference	NOUN
finefocus-683	42	11	in	in	ADP
finefocus-683	42	12	the	the	DET
finefocus-683	42	13	quality	quality	NOUN
finefocus-683	42	14	of	of	ADP
finefocus-683	42	15	the	the	DET
finefocus-683	42	16	various	various	ADJ
finefocus-683	42	17	possible	possible	ADJ
finefocus-683	42	18	alignments	alignment	NOUN
finefocus-683	42	19	for	for	ADP
finefocus-683	42	20	the	the	DET
finefocus-683	42	21	asfv	asfv	ADJ
finefocus-683	42	22	mgfs	mgfs	NOUN
finefocus-683	42	23	from	from	ADP
finefocus-683	42	24	a	a	DET
finefocus-683	42	25	msa	msa	PROPN
finefocus-683	42	26	.	.	PUNCT
finefocus-683	43	1	therefore	therefore	ADV
finefocus-683	43	2	dotplots	dotplot	NOUN
finefocus-683	43	3	,	,	PUNCT
finefocus-683	43	4	which	which	PRON
finefocus-683	43	5	provide	provide	VERB
finefocus-683	43	6	a	a	DET
finefocus-683	43	7	2	2	NUM
finefocus-683	43	8	-	-	PUNCT
finefocus-683	43	9	dimensional	dimensional	ADJ
finefocus-683	43	10	visualization	visualization	NOUN
finefocus-683	43	11	of	of	ADP
finefocus-683	43	12	all	all	DET
finefocus-683	43	13	nucleotides	nucleotide	NOUN
finefocus-683	43	14	-	-	PUNCT
finefocus-683	43	15	against	against	ADP
finefocus-683	43	16	-	-	PUNCT
finefocus-683	43	17	all	all	PRON
finefocus-683	43	18	nucleotides	nucleotide	NOUN
finefocus-683	43	19	were	be	AUX
finefocus-683	43	20	used	use	VERB
finefocus-683	43	21	to	to	PART
finefocus-683	43	22	supplement	supplement	VERB
finefocus-683	43	23	genome	genome	NOUN
finefocus-683	43	24	alignments	alignment	NOUN
finefocus-683	43	25	(	(	PUNCT
finefocus-683	43	26	jdotter	jdotter	ADV
finefocus-683	43	27	;	;	PUNCT
finefocus-683	43	28	(	(	PUNCT
finefocus-683	43	29	3	3	NUM
finefocus-683	43	30	)	)	PUNCT
finefocus-683	43	31	)	)	PUNCT
finefocus-683	43	32	.	.	PUNCT
finefocus-683	44	1	a	a	DET
finefocus-683	44	2	dotplot	dotplot	NOUN
finefocus-683	44	3	was	be	AUX
finefocus-683	44	4	created	create	VERB
finefocus-683	44	5	for	for	ADP
finefocus-683	44	6	each	each	DET
finefocus-683	44	7	individual	individual	ADJ
finefocus-683	44	8	mgf	mgf	PROPN
finefocus-683	44	9	gene	gene	NOUN
finefocus-683	44	10	compared	compare	VERB
finefocus-683	44	11	against	against	ADP
finefocus-683	44	12	a	a	DET
finefocus-683	44	13	full	full	ADJ
finefocus-683	44	14	length	length	NOUN
finefocus-683	44	15	asfv	asfv	NOUN
finefocus-683	44	16	reference	reference	NOUN
finefocus-683	44	17	genome	genome	NOUN
finefocus-683	44	18	.	.	PUNCT
finefocus-683	45	1	the	the	DET
finefocus-683	45	2	series	series	NOUN
finefocus-683	45	3	of	of	ADP
finefocus-683	45	4	matrix	matrix	NOUN
finefocus-683	45	5	alignments	alignment	NOUN
finefocus-683	45	6	across	across	ADP
finefocus-683	45	7	the	the	DET
finefocus-683	45	8	dotplots	dotplot	NOUN
finefocus-683	45	9	created	create	VERB
finefocus-683	45	10	a	a	DET
finefocus-683	45	11	unique	unique	ADJ
finefocus-683	45	12	“	"	PUNCT
finefocus-683	45	13	barcode	barcode	NOUN
finefocus-683	45	14	”	"	PUNCT
finefocus-683	45	15	describing	describe	VERB
finefocus-683	45	16	the	the	DET
finefocus-683	45	17	relationship	relationship	NOUN
finefocus-683	45	18	of	of	ADP
finefocus-683	45	19	the	the	DET
finefocus-683	45	20	gene	gene	NOUN
finefocus-683	45	21	to	to	ADP
finefocus-683	45	22	all	all	DET
finefocus-683	45	23	the	the	DET
finefocus-683	45	24	paralogs	paralog	NOUN
finefocus-683	45	25	in	in	ADP
finefocus-683	45	26	the	the	DET
finefocus-683	45	27	mgfs	mgfs	NOUN
finefocus-683	45	28	.	.	PUNCT
finefocus-683	46	1	the	the	DET
finefocus-683	46	2	dotplots	dotplot	NOUN
finefocus-683	46	3	were	be	AUX
finefocus-683	46	4	especially	especially	ADV
finefocus-683	46	5	useful	useful	ADJ
finefocus-683	46	6	for	for	ADP
finefocus-683	46	7	determining	determine	VERB
finefocus-683	46	8	the	the	DET
finefocus-683	46	9	breakpoints	breakpoint	NOUN
finefocus-683	46	10	between	between	ADP
finefocus-683	46	11	fused	fuse	VERB
finefocus-683	46	12	paralogs	paralog	NOUN
finefocus-683	46	13	.	.	PUNCT
finefocus-683	47	1	mgf	mgf	PROPN
finefocus-683	47	2	paralogs	paralog	VERB
finefocus-683	47	3	size	size	NOUN
finefocus-683	47	4	(	(	PUNCT
finefocus-683	47	5	bp	bp	PROPN
finefocus-683	47	6	)	)	PUNCT
finefocus-683	47	7	conservation	conservation	NOUN
finefocus-683	47	8	mis	mi	NOUN
finefocus-683	47	9	-	-	PUNCT
finefocus-683	47	10	annotations	annotation	NOUN
finefocus-683	47	11	mgf	mgf	NOUN
finefocus-683	47	12	100	100	NUM
finefocus-683	47	13	3	3	NUM
finefocus-683	47	14	375	375	NUM
finefocus-683	47	15	-	-	SYM
finefocus-683	47	16	440	440	NUM
finefocus-683	47	17	high	high	ADJ
finefocus-683	47	18	1	1	NUM
finefocus-683	47	19	mgf	mgf	PROPN
finefocus-683	47	20	110	110	NUM
finefocus-683	47	21	13	13	NUM
finefocus-683	47	22	315	315	NUM
finefocus-683	47	23	-	-	SYM
finefocus-683	47	24	875	875	NUM
finefocus-683	47	25	low	low	ADJ
finefocus-683	47	26	27	27	NUM
finefocus-683	47	27	mgf	mgf	NOUN
finefocus-683	47	28	300	300	NUM
finefocus-683	47	29	3	3	NUM
finefocus-683	47	30	315	315	NUM
finefocus-683	47	31	-	-	SYM
finefocus-683	47	32	800	800	NUM
finefocus-683	47	33	high	high	ADJ
finefocus-683	47	34	5	5	NUM
finefocus-683	47	35	mgf	mgf	NOUN
finefocus-683	47	36	360	360	NUM
finefocus-683	47	37	19	19	NUM
finefocus-683	47	38	960	960	NUM
finefocus-683	47	39	-	-	SYM
finefocus-683	47	40	1100	1100	NUM
finefocus-683	47	41	moderate	moderate	ADJ
finefocus-683	47	42	17	17	NUM
finefocus-683	47	43	mgf	mgf	PROPN
finefocus-683	47	44	505	505	NUM
finefocus-683	47	45	10	10	NUM
finefocus-683	47	46	1500	1500	NUM
finefocus-683	47	47	-	-	SYM
finefocus-683	47	48	1630	1630	NUM
finefocus-683	47	49	moderate	moderate	ADJ
finefocus-683	47	50	12	12	NUM
finefocus-683	47	51	table	table	NOUN
finefocus-683	47	52	1	1	NUM
finefocus-683	47	53	.	.	PUNCT
finefocus-683	48	1	summary	summary	NOUN
finefocus-683	48	2	of	of	ADP
finefocus-683	48	3	the	the	DET
finefocus-683	48	4	5	5	NUM
finefocus-683	48	5	mgfs	mgfs	NOUN
finefocus-683	48	6	for	for	ADP
finefocus-683	48	7	the	the	DET
finefocus-683	48	8	16	16	NUM
finefocus-683	48	9	asfv	asfv	NOUN
finefocus-683	48	10	strains	strain	NOUN
finefocus-683	48	11	.	.	PUNCT
finefocus-683	49	1	the	the	DET
finefocus-683	49	2	relative	relative	ADJ
finefocus-683	49	3	conservation	conservation	NOUN
finefocus-683	49	4	between	between	ADP
finefocus-683	49	5	the	the	DET
finefocus-683	49	6	paralogs	paralog	NOUN
finefocus-683	49	7	inversely	inversely	ADV
finefocus-683	49	8	correlates	correlate	VERB
finefocus-683	49	9	with	with	ADP
finefocus-683	49	10	the	the	DET
finefocus-683	49	11	number	number	NOUN
finefocus-683	49	12	of	of	ADP
finefocus-683	49	13	paralogs	paralog	NOUN
finefocus-683	49	14	.	.	PUNCT
finefocus-683	50	1	the	the	DET
finefocus-683	50	2	“	"	PUNCT
finefocus-683	50	3	mis	mi	NOUN
finefocus-683	50	4	-	-	PUNCT
finefocus-683	50	5	annotations	annotation	NOUN
finefocus-683	50	6	”	"	PUNCT
finefocus-683	50	7	column	column	NOUN
finefocus-683	50	8	indicates	indicate	VERB
finefocus-683	50	9	the	the	DET
finefocus-683	50	10	number	number	NOUN
finefocus-683	50	11	of	of	ADP
finefocus-683	50	12	figure	figure	NOUN
finefocus-683	50	13	2	2	NUM
finefocus-683	50	14	.	.	PUNCT
finefocus-683	50	15	visual	visual	ADJ
finefocus-683	50	16	summary	summary	NOUN
finefocus-683	50	17	from	from	ADP
finefocus-683	50	18	bbb	bbb	PROPN
finefocus-683	50	19	of	of	ADP
finefocus-683	50	20	mgf	mgf	PROPN
finefocus-683	50	21	110	110	NUM
finefocus-683	50	22	-	-	SYM
finefocus-683	50	23	1l/-2l/-3l	1l/-2l/-3l	NUM
finefocus-683	50	24	paralogs	paralog	VERB
finefocus-683	50	25	from	from	ADP
finefocus-683	50	26	9	9	NUM
finefocus-683	50	27	asfv	asfv	NOUN
finefocus-683	50	28	genomes	genome	NOUN
finefocus-683	50	29	.	.	PUNCT
finefocus-683	51	1	thin	thin	ADJ
finefocus-683	51	2	vertical	vertical	ADJ
finefocus-683	51	3	dark	dark	ADJ
finefocus-683	51	4	blue	blue	ADJ
finefocus-683	51	5	bars	bar	NOUN
finefocus-683	51	6	,	,	PUNCT
finefocus-683	51	7	red	red	ADJ
finefocus-683	51	8	and	and	CCONJ
finefocus-683	51	9	green	green	ADJ
finefocus-683	51	10	blocks	block	NOUN
finefocus-683	51	11	represent	represent	VERB
finefocus-683	51	12	snps	snps	PROPN
finefocus-683	51	13	and	and	CCONJ
finefocus-683	51	14	insertions	insertion	NOUN
finefocus-683	51	15	and	and	CCONJ
finefocus-683	51	16	deletions	deletion	NOUN
finefocus-683	51	17	with	with	ADP
finefocus-683	51	18	respect	respect	NOUN
finefocus-683	51	19	to	to	ADP
finefocus-683	51	20	the	the	DET
finefocus-683	51	21	topmost	topmost	ADJ
finefocus-683	51	22	sequence	sequence	NOUN
finefocus-683	51	23	.	.	PUNCT
finefocus-683	52	1	light	light	ADJ
finefocus-683	52	2	blue	blue	ADJ
finefocus-683	52	3	blocks	block	NOUN
finefocus-683	52	4	represent	represent	VERB
finefocus-683	52	5	orfs	orf	NOUN
finefocus-683	52	6	.	.	PUNCT
finefocus-683	53	1	gene	gene	NOUN
finefocus-683	53	2	labels	label	NOUN
finefocus-683	53	3	,	,	PUNCT
finefocus-683	53	4	positioned	position	VERB
finefocus-683	53	5	on	on	ADP
finefocus-683	53	6	the	the	DET
finefocus-683	53	7	orfs	orf	NOUN
finefocus-683	53	8	,	,	PUNCT
finefocus-683	53	9	indicate	indicate	VERB
finefocus-683	53	10	previous	previous	ADJ
finefocus-683	53	11	annotations	annotation	NOUN
finefocus-683	53	12	(	(	PUNCT
finefocus-683	53	13	note	note	VERB
finefocus-683	53	14	inconsistencies	inconsistency	NOUN
finefocus-683	53	15	)	)	PUNCT
finefocus-683	53	16	as	as	ADV
finefocus-683	53	17	well	well	ADV
finefocus-683	53	18	as	as	ADP
finefocus-683	53	19	gene	gene	NOUN
finefocus-683	53	20	number	number	NOUN
finefocus-683	53	21	.	.	PUNCT
finefocus-683	54	1	boxed	box	VERB
finefocus-683	54	2	gene	gene	NOUN
finefocus-683	54	3	labels	label	NOUN
finefocus-683	54	4	indicate	indicate	VERB
finefocus-683	54	5	new	new	ADJ
finefocus-683	54	6	nomenclature	nomenclature	NOUN
finefocus-683	54	7	.	.	PUNCT
finefocus-683	55	1	figure	figure	NOUN
finefocus-683	55	2	3	3	NUM
finefocus-683	55	3	.	.	PUNCT
finefocus-683	56	1	visual	visual	ADJ
finefocus-683	56	2	summary	summary	NOUN
finefocus-683	56	3	displaying	display	VERB
finefocus-683	56	4	fragmentation	fragmentation	NOUN
finefocus-683	56	5	of	of	ADP
finefocus-683	56	6	mgf	mgf	PROPN
finefocus-683	56	7	110	110	NUM
finefocus-683	56	8	-	-	PUNCT
finefocus-683	56	9	11l	11l	NUM
finefocus-683	56	10	orthologs	ortholog	NOUN
finefocus-683	56	11	.	.	PUNCT
finefocus-683	57	1	gene	gene	NOUN
finefocus-683	57	2	labels	label	NOUN
finefocus-683	57	3	indicate	indicate	VERB
finefocus-683	57	4	the	the	DET
finefocus-683	57	5	previously	previously	ADV
finefocus-683	57	6	annotated	annotate	VERB
finefocus-683	57	7	orthologs	ortholog	NOUN
finefocus-683	57	8	.	.	PUNCT
finefocus-683	58	1	thin	thin	ADJ
finefocus-683	58	2	vertical	vertical	ADJ
finefocus-683	58	3	dark	dark	ADJ
finefocus-683	58	4	blue	blue	ADJ
finefocus-683	58	5	bars	bar	NOUN
finefocus-683	58	6	,	,	PUNCT
finefocus-683	58	7	red	red	ADJ
finefocus-683	58	8	and	and	CCONJ
finefocus-683	58	9	green	green	ADJ
finefocus-683	58	10	blocks	block	NOUN
finefocus-683	58	11	represent	represent	VERB
finefocus-683	58	12	snps	snps	PROPN
finefocus-683	58	13	and	and	CCONJ
finefocus-683	58	14	insertions	insertion	NOUN
finefocus-683	58	15	and	and	CCONJ
finefocus-683	58	16	deletions	deletion	NOUN
finefocus-683	58	17	with	with	ADP
finefocus-683	58	18	respect	respect	NOUN
finefocus-683	58	19	to	to	ADP
finefocus-683	58	20	the	the	DET
finefocus-683	58	21	topmost	topmost	ADJ
finefocus-683	58	22	sequence	sequence	NOUN
finefocus-683	58	23	.	.	PUNCT
finefocus-683	59	1	the	the	DET
finefocus-683	59	2	mgf	mgf	PROPN
finefocus-683	59	3	110	110	NUM
finefocus-683	59	4	-	-	PUNCT
finefocus-683	59	5	10l	10l	NOUN
finefocus-683	59	6	is	be	AUX
finefocus-683	59	7	not	not	PART
finefocus-683	59	8	represented	represent	VERB
finefocus-683	59	9	in	in	ADP
finefocus-683	59	10	this	this	DET
finefocus-683	59	11	diagram	diagram	NOUN
finefocus-683	59	12	due	due	ADP
finefocus-683	59	13	to	to	ADP
finefocus-683	59	14	annotation	annotation	NOUN
finefocus-683	59	15	only	only	ADV
finefocus-683	59	16	in	in	ADP
finefocus-683	59	17	warmbaths	warmbath	NOUN
finefocus-683	59	18	strain	strain	NOUN
finefocus-683	59	19	that	that	PRON
finefocus-683	59	20	is	be	AUX
finefocus-683	59	21	more	more	ADV
finefocus-683	59	22	likely	likely	ADJ
finefocus-683	59	23	a	a	DET
finefocus-683	59	24	truncated	truncated	ADJ
finefocus-683	59	25	mgf	mgf	PROPN
finefocus-683	59	26	110	110	NUM
finefocus-683	59	27	-	-	PUNCT
finefocus-683	59	28	11l	11l	NUM
finefocus-683	59	29	ortholog	ortholog	NOUN
finefocus-683	59	30	.	.	PUNCT
finefocus-683	60	1	nucleotide	nucleotide	ADJ
finefocus-683	60	2	positions	position	NOUN
finefocus-683	60	3	are	be	AUX
finefocus-683	60	4	mapped	map	VERB
finefocus-683	60	5	at	at	ADP
finefocus-683	60	6	the	the	DET
finefocus-683	60	7	bottom	bottom	NOUN
finefocus-683	60	8	of	of	ADP
finefocus-683	60	9	the	the	DET
finefocus-683	60	10	figure	figure	NOUN
finefocus-683	60	11	.	.	PUNCT
finefocus-683	61	1	african	african	ADJ
finefocus-683	61	2	swine	swine	ADJ
finefocus-683	61	3	fever	fever	NOUN
finefocus-683	61	4	virus	virus	NOUN
finefocus-683	61	5	•	•	ADV
finefocus-683	61	6	159158	159158	NUM
finefocus-683	61	7	•	•	NOUN
finefocus-683	61	8	fine	fine	ADJ
finefocus-683	61	9	focus	focus	NOUN
finefocus-683	61	10	,	,	PUNCT
finefocus-683	61	11	vol	vol	NOUN
finefocus-683	61	12	.	.	NOUN
finefocus-683	61	13	3	3	NUM
finefocus-683	61	14	(	(	PUNCT
finefocus-683	61	15	2	2	NUM
finefocus-683	61	16	)	)	PUNCT
finefocus-683	61	17	construction	construction	NOUN
finefocus-683	61	18	of	of	ADP
finefocus-683	61	19	mgf	mgf	PROPN
finefocus-683	61	20	maps	map	NOUN
finefocus-683	61	21	the	the	DET
finefocus-683	61	22	mgf	mgf	PROPN
finefocus-683	61	23	maps	map	NOUN
finefocus-683	61	24	were	be	AUX
finefocus-683	61	25	created	create	VERB
finefocus-683	61	26	as	as	ADP
finefocus-683	61	27	vector	vector	NOUN
finefocus-683	61	28	graphics	graphic	NOUN
finefocus-683	61	29	with	with	ADP
finefocus-683	61	30	omnigraffle	omnigraffle	NOUN
finefocus-683	61	31	(	(	PUNCT
finefocus-683	61	32	omni	omni	PROPN
finefocus-683	61	33	group	group	PROPN
finefocus-683	61	34	,	,	PUNCT
finefocus-683	61	35	seattle	seattle	PROPN
finefocus-683	61	36	)	)	PUNCT
finefocus-683	61	37	on	on	ADP
finefocus-683	61	38	imac	imac	NOUN
finefocus-683	61	39	computers	computer	NOUN
finefocus-683	61	40	.	.	PUNCT
finefocus-683	62	1	these	these	DET
finefocus-683	62	2	diagrams	diagram	NOUN
finefocus-683	62	3	can	can	AUX
finefocus-683	62	4	be	be	AUX
finefocus-683	62	5	fully	fully	ADV
finefocus-683	62	6	edited	edit	VERB
finefocus-683	62	7	to	to	PART
finefocus-683	62	8	incorporate	incorporate	VERB
finefocus-683	62	9	new	new	ADJ
finefocus-683	62	10	genomes	genome	NOUN
finefocus-683	62	11	and	and	CCONJ
finefocus-683	62	12	new	new	ADJ
finefocus-683	62	13	mgf	mgf	PROPN
finefocus-683	62	14	orthologs	ortholog	NOUN
finefocus-683	62	15	as	as	SCONJ
finefocus-683	62	16	they	they	PRON
finefocus-683	62	17	are	be	AUX
finefocus-683	62	18	discovered	discover	VERB
finefocus-683	62	19	.	.	PUNCT
finefocus-683	63	1	results	result	VERB
finefocus-683	63	2	the	the	DET
finefocus-683	63	3	goal	goal	NOUN
finefocus-683	63	4	of	of	ADP
finefocus-683	63	5	this	this	DET
finefocus-683	63	6	analysis	analysis	NOUN
finefocus-683	63	7	was	be	AUX
finefocus-683	63	8	to	to	PART
finefocus-683	63	9	create	create	VERB
finefocus-683	63	10	an	an	DET
finefocus-683	63	11	accurate	accurate	ADJ
finefocus-683	63	12	reference	reference	NOUN
finefocus-683	63	13	map	map	NOUN
finefocus-683	63	14	of	of	ADP
finefocus-683	63	15	the	the	DET
finefocus-683	63	16	distribution	distribution	NOUN
finefocus-683	63	17	of	of	ADP
finefocus-683	63	18	mgf	mgf	PROPN
finefocus-683	63	19	members	member	NOUN
finefocus-683	63	20	throughout	throughout	ADP
finefocus-683	63	21	the	the	DET
finefocus-683	63	22	16	16	NUM
finefocus-683	63	23	sequenced	sequence	VERB
finefocus-683	63	24	asfv	asfv	NOUN
finefocus-683	63	25	genomes	genome	NOUN
finefocus-683	63	26	.	.	PUNCT
finefocus-683	64	1	since	since	SCONJ
finefocus-683	64	2	the	the	DET
finefocus-683	64	3	mgf	mgf	PROPN
finefocus-683	64	4	members	member	NOUN
finefocus-683	64	5	are	be	AUX
finefocus-683	64	6	not	not	PART
finefocus-683	64	7	simply	simply	ADV
finefocus-683	64	8	present	present	ADJ
finefocus-683	64	9	or	or	CCONJ
finefocus-683	64	10	absent	absent	ADJ
finefocus-683	64	11	,	,	PUNCT
finefocus-683	64	12	an	an	DET
finefocus-683	64	13	annotation	annotation	NOUN
finefocus-683	64	14	scheme	scheme	NOUN
finefocus-683	64	15	was	be	AUX
finefocus-683	64	16	also	also	ADV
finefocus-683	64	17	required	require	VERB
finefocus-683	64	18	to	to	PART
finefocus-683	64	19	describe	describe	VERB
finefocus-683	64	20	the	the	DET
finefocus-683	64	21	various	various	ADJ
finefocus-683	64	22	gene	gene	NOUN
finefocus-683	64	23	fragmentation	fragmentation	NOUN
finefocus-683	64	24	/	/	SYM
finefocus-683	64	25	truncation/	truncation/	NUM
finefocus-683	64	26	fusion	fusion	NOUN
finefocus-683	64	27	patterns	pattern	NOUN
finefocus-683	64	28	that	that	PRON
finefocus-683	64	29	exist	exist	VERB
finefocus-683	64	30	in	in	ADP
finefocus-683	64	31	the	the	DET
finefocus-683	64	32	different	different	ADJ
finefocus-683	64	33	virus	virus	NOUN
finefocus-683	64	34	strains	strain	VERB
finefocus-683	64	35	.	.	PUNCT
finefocus-683	65	1	since	since	SCONJ
finefocus-683	65	2	we	we	PRON
finefocus-683	65	3	do	do	AUX
finefocus-683	65	4	not	not	PART
finefocus-683	65	5	yet	yet	ADV
finefocus-683	65	6	know	know	VERB
finefocus-683	65	7	the	the	DET
finefocus-683	65	8	functional	functional	ADJ
finefocus-683	65	9	consequences	consequence	NOUN
finefocus-683	65	10	of	of	ADP
finefocus-683	65	11	these	these	DET
finefocus-683	65	12	multiple	multiple	ADJ
finefocus-683	65	13	rearrangements	rearrangement	NOUN
finefocus-683	65	14	on	on	ADP
finefocus-683	65	15	the	the	DET
finefocus-683	65	16	biology	biology	NOUN
finefocus-683	65	17	of	of	ADP
finefocus-683	65	18	the	the	DET
finefocus-683	65	19	viruses	virus	NOUN
finefocus-683	65	20	,	,	PUNCT
finefocus-683	65	21	the	the	DET
finefocus-683	65	22	purpose	purpose	NOUN
finefocus-683	65	23	of	of	ADP
finefocus-683	65	24	the	the	DET
finefocus-683	65	25	map	map	NOUN
finefocus-683	65	26	is	be	AUX
finefocus-683	65	27	primarily	primarily	ADV
finefocus-683	65	28	to	to	PART
finefocus-683	65	29	flag	flag	VERB
finefocus-683	65	30	the	the	DET
finefocus-683	65	31	various	various	ADJ
finefocus-683	65	32	differences	difference	NOUN
finefocus-683	65	33	that	that	PRON
finefocus-683	65	34	exist	exist	VERB
finefocus-683	65	35	between	between	ADP
finefocus-683	65	36	the	the	DET
finefocus-683	65	37	asfv	asfv	NOUN
finefocus-683	65	38	mgfs	mgfs	NOUN
finefocus-683	65	39	.	.	PUNCT
finefocus-683	66	1	in	in	ADP
finefocus-683	66	2	addition	addition	NOUN
finefocus-683	66	3	,	,	PUNCT
finefocus-683	66	4	due	due	ADP
finefocus-683	66	5	to	to	ADP
finefocus-683	66	6	the	the	DET
finefocus-683	66	7	extremely	extremely	ADV
finefocus-683	66	8	complex	complex	ADJ
finefocus-683	66	9	nature	nature	NOUN
finefocus-683	66	10	of	of	ADP
finefocus-683	66	11	the	the	DET
finefocus-683	66	12	indels	indel	NOUN
finefocus-683	66	13	in	in	ADP
finefocus-683	66	14	the	the	DET
finefocus-683	66	15	mgf	mgf	PROPN
finefocus-683	66	16	regions	region	NOUN
finefocus-683	66	17	,	,	PUNCT
finefocus-683	66	18	which	which	PRON
finefocus-683	66	19	compound	compound	VERB
finefocus-683	66	20	when	when	SCONJ
finefocus-683	66	21	msas	msa	NOUN
finefocus-683	66	22	are	be	AUX
finefocus-683	66	23	generated	generate	VERB
finefocus-683	66	24	,	,	PUNCT
finefocus-683	66	25	we	we	PRON
finefocus-683	66	26	opted	opt	VERB
finefocus-683	66	27	to	to	PART
finefocus-683	66	28	illustrate	illustrate	VERB
finefocus-683	66	29	general	general	ADJ
finefocus-683	66	30	variations	variation	NOUN
finefocus-683	66	31	in	in	ADP
finefocus-683	66	32	the	the	DET
finefocus-683	66	33	open	open	ADJ
finefocus-683	66	34	reading	reading	NOUN
finefocus-683	66	35	frame	frame	NOUN
finefocus-683	66	36	(	(	PUNCT
finefocus-683	66	37	orf	orf	PROPN
finefocus-683	66	38	)	)	PUNCT
finefocus-683	66	39	patterns	pattern	NOUN
finefocus-683	66	40	rather	rather	ADV
finefocus-683	66	41	than	than	ADP
finefocus-683	66	42	try	try	VERB
finefocus-683	66	43	to	to	PART
finefocus-683	66	44	capture	capture	VERB
finefocus-683	66	45	every	every	DET
finefocus-683	66	46	single	single	ADJ
finefocus-683	66	47	difference	difference	NOUN
finefocus-683	66	48	.	.	PUNCT
finefocus-683	67	1	our	our	PRON
finefocus-683	67	2	results	result	NOUN
finefocus-683	67	3	are	be	AUX
finefocus-683	67	4	sufficient	sufficient	ADJ
finefocus-683	67	5	to	to	PART
finefocus-683	67	6	flag	flag	VERB
finefocus-683	67	7	differences	difference	NOUN
finefocus-683	67	8	between	between	ADP
finefocus-683	67	9	the	the	DET
finefocus-683	67	10	paralogs	paralog	NOUN
finefocus-683	67	11	so	so	SCONJ
finefocus-683	67	12	that	that	SCONJ
finefocus-683	67	13	a	a	DET
finefocus-683	67	14	detailed	detailed	ADJ
finefocus-683	67	15	dna	dna	NOUN
finefocus-683	67	16	sequence	sequence	NOUN
finefocus-683	67	17	alignment	alignment	NOUN
finefocus-683	67	18	of	of	ADP
finefocus-683	67	19	the	the	DET
finefocus-683	67	20	region	region	NOUN
finefocus-683	67	21	can	can	AUX
finefocus-683	67	22	be	be	AUX
finefocus-683	67	23	performed	perform	VERB
finefocus-683	67	24	if	if	SCONJ
finefocus-683	67	25	more	more	ADJ
finefocus-683	67	26	information	information	NOUN
finefocus-683	67	27	is	be	AUX
finefocus-683	67	28	required	require	VERB
finefocus-683	67	29	for	for	ADP
finefocus-683	67	30	a	a	DET
finefocus-683	67	31	particular	particular	ADJ
finefocus-683	67	32	study	study	NOUN
finefocus-683	67	33	.	.	PUNCT
finefocus-683	68	1	there	there	PRON
finefocus-683	68	2	are	be	VERB
finefocus-683	68	3	currently	currently	ADV
finefocus-683	68	4	5	5	NUM
finefocus-683	68	5	known	know	VERB
finefocus-683	68	6	mgf	mgf	PROPN
finefocus-683	68	7	series	series	NOUN
finefocus-683	68	8	observed	observe	VERB
finefocus-683	68	9	in	in	ADP
finefocus-683	68	10	asfv	asfv	PROPN
finefocus-683	68	11	.	.	PUNCT
finefocus-683	69	1	paralogs	paralog	VERB
finefocus-683	69	2	within	within	ADP
finefocus-683	69	3	an	an	DET
finefocus-683	69	4	mgf	mgf	PROPN
finefocus-683	69	5	series	series	NOUN
finefocus-683	69	6	are	be	AUX
finefocus-683	69	7	numbered	number	VERB
finefocus-683	69	8	chronologically	chronologically	ADV
finefocus-683	69	9	as	as	SCONJ
finefocus-683	69	10	they	they	PRON
finefocus-683	69	11	appear	appear	VERB
finefocus-683	69	12	in	in	ADP
finefocus-683	69	13	the	the	DET
finefocus-683	69	14	asfv	asfv	NOUN
finefocus-683	69	15	genome	genome	NOUN
finefocus-683	69	16	and	and	CCONJ
finefocus-683	69	17	are	be	AUX
finefocus-683	69	18	classified	classify	VERB
finefocus-683	69	19	as	as	ADP
finefocus-683	69	20	“	"	PUNCT
finefocus-683	69	21	r	r	NOUN
finefocus-683	69	22	”	"	PUNCT
finefocus-683	69	23	or	or	CCONJ
finefocus-683	69	24	“	"	PUNCT
finefocus-683	69	25	l	l	NOUN
finefocus-683	69	26	”	"	PUNCT
finefocus-683	69	27	indicating	indicate	VERB
finefocus-683	69	28	that	that	SCONJ
finefocus-683	69	29	this	this	DET
finefocus-683	69	30	gene	gene	NOUN
finefocus-683	69	31	is	be	AUX
finefocus-683	69	32	either	either	ADV
finefocus-683	69	33	transcribed	transcribe	VERB
finefocus-683	69	34	on	on	ADP
finefocus-683	69	35	the	the	DET
finefocus-683	69	36	forward	forward	NOUN
finefocus-683	69	37	or	or	CCONJ
finefocus-683	69	38	reverse	reverse	VERB
finefocus-683	69	39	strand	strand	NOUN
finefocus-683	69	40	respectively	respectively	ADV
finefocus-683	69	41	.	.	PUNCT
finefocus-683	70	1	our	our	PRON
finefocus-683	70	2	first	first	ADJ
finefocus-683	70	3	step	step	NOUN
finefocus-683	70	4	in	in	ADP
finefocus-683	70	5	reviewing	review	VERB
finefocus-683	70	6	the	the	DET
finefocus-683	70	7	relationships	relationship	NOUN
finefocus-683	70	8	between	between	ADP
finefocus-683	70	9	the	the	DET
finefocus-683	70	10	paralogs	paralog	NOUN
finefocus-683	70	11	/	/	SYM
finefocus-683	70	12	orthologs	ortholog	NOUN
finefocus-683	70	13	of	of	ADP
finefocus-683	70	14	each	each	DET
finefocus-683	70	15	mgf	mgf	NOUN
finefocus-683	70	16	was	be	AUX
finefocus-683	70	17	to	to	PART
finefocus-683	70	18	create	create	VERB
finefocus-683	70	19	a	a	DET
finefocus-683	70	20	phylogenetic	phylogenetic	ADJ
finefocus-683	70	21	tree	tree	NOUN
finefocus-683	70	22	.	.	PUNCT
finefocus-683	71	1	the	the	DET
finefocus-683	71	2	msa	msa	PROPN
finefocus-683	71	3	was	be	AUX
finefocus-683	71	4	generated	generate	VERB
finefocus-683	71	5	using	use	VERB
finefocus-683	71	6	mafft	mafft	PROPN
finefocus-683	71	7	with	with	ADP
finefocus-683	71	8	the	the	DET
finefocus-683	71	9	dna	dna	PROPN
finefocus-683	71	10	sequences	sequence	NOUN
finefocus-683	71	11	and	and	CCONJ
finefocus-683	71	12	the	the	DET
finefocus-683	71	13	phylogenetic	phylogenetic	ADJ
finefocus-683	71	14	trees	tree	NOUN
finefocus-683	71	15	were	be	AUX
finefocus-683	71	16	constructed	construct	VERB
finefocus-683	71	17	with	with	ADP
finefocus-683	71	18	raxml	raxml	NOUN
finefocus-683	71	19	.	.	PUNCT
finefocus-683	72	1	figure	figure	NOUN
finefocus-683	72	2	1	1	NUM
finefocus-683	72	3	illustrates	illustrate	VERB
finefocus-683	72	4	the	the	DET
finefocus-683	72	5	value	value	NOUN
finefocus-683	72	6	of	of	ADP
finefocus-683	72	7	the	the	DET
finefocus-683	72	8	trees	tree	NOUN
finefocus-683	72	9	by	by	ADP
finefocus-683	72	10	showing	show	VERB
finefocus-683	72	11	a	a	DET
finefocus-683	72	12	visual	visual	ADJ
finefocus-683	72	13	representation	representation	NOUN
finefocus-683	72	14	of	of	ADP
finefocus-683	72	15	the	the	DET
finefocus-683	72	16	relationship	relationship	NOUN
finefocus-683	72	17	between	between	ADP
finefocus-683	72	18	the	the	DET
finefocus-683	72	19	paralogs	paralog	NOUN
finefocus-683	72	20	of	of	ADP
finefocus-683	72	21	the	the	DET
finefocus-683	72	22	mgf-505	mgf-505	PROPN
finefocus-683	72	23	series	series	PROPN
finefocus-683	72	24	(	(	PUNCT
finefocus-683	72	25	mgf	mgf	PROPN
finefocus-683	72	26	average	average	ADJ
finefocus-683	72	27	size	size	NOUN
finefocus-683	72	28	505	505	NUM
finefocus-683	72	29	amino	amino	NOUN
finefocus-683	72	30	acids	acid	NOUN
finefocus-683	72	31	)	)	PUNCT
finefocus-683	72	32	.	.	PUNCT
finefocus-683	73	1	for	for	ADP
finefocus-683	73	2	example	example	NOUN
finefocus-683	73	3	,	,	PUNCT
finefocus-683	73	4	the	the	DET
finefocus-683	73	5	tree	tree	NOUN
finefocus-683	73	6	shows	show	VERB
finefocus-683	73	7	that	that	PRON
finefocus-683	73	8	paralogs	paralog	VERB
finefocus-683	73	9	mgf-505	mgf-505	NOUN
finefocus-683	73	10	-	-	PUNCT
finefocus-683	73	11	6r	6r	NUM
finefocus-683	73	12	and	and	CCONJ
finefocus-683	73	13	mgf-505	mgf-505	NOUN
finefocus-683	73	14	-	-	PUNCT
finefocus-683	73	15	7r	7r	NUM
finefocus-683	73	16	result	result	NOUN
finefocus-683	73	17	from	from	ADP
finefocus-683	73	18	a	a	DET
finefocus-683	73	19	relatively	relatively	ADV
finefocus-683	73	20	recent	recent	ADJ
finefocus-683	73	21	duplication	duplication	NOUN
finefocus-683	73	22	.	.	PUNCT
finefocus-683	74	1	however	however	ADV
finefocus-683	74	2	,	,	PUNCT
finefocus-683	74	3	it	it	PRON
finefocus-683	74	4	must	must	AUX
finefocus-683	74	5	be	be	AUX
finefocus-683	74	6	appreciated	appreciate	VERB
finefocus-683	74	7	that	that	SCONJ
finefocus-683	74	8	phylogenetic	phylogenetic	ADJ
finefocus-683	74	9	trees	tree	NOUN
finefocus-683	74	10	also	also	ADV
finefocus-683	74	11	hide	hide	VERB
finefocus-683	74	12	the	the	DET
finefocus-683	74	13	raw	raw	ADJ
finefocus-683	74	14	data	datum	NOUN
finefocus-683	74	15	,	,	PUNCT
finefocus-683	74	16	which	which	PRON
finefocus-683	74	17	may	may	AUX
finefocus-683	74	18	have	have	VERB
finefocus-683	74	19	valuable	valuable	ADJ
finefocus-683	74	20	information	information	NOUN
finefocus-683	74	21	about	about	ADP
finefocus-683	74	22	the	the	DET
finefocus-683	74	23	sequences	sequence	NOUN
finefocus-683	74	24	.	.	PUNCT
finefocus-683	75	1	for	for	ADP
finefocus-683	75	2	example	example	NOUN
finefocus-683	75	3	,	,	PUNCT
finefocus-683	75	4	recombination	recombination	NOUN
finefocus-683	75	5	events	event	NOUN
finefocus-683	75	6	and	and	CCONJ
finefocus-683	75	7	deletions	deletion	NOUN
finefocus-683	75	8	that	that	PRON
finefocus-683	75	9	fuse	fuse	NOUN
finefocus-683	75	10	two	two	NUM
finefocus-683	75	11	paralogs	paralog	NOUN
finefocus-683	75	12	are	be	AUX
finefocus-683	75	13	likely	likely	ADJ
finefocus-683	75	14	to	to	PART
finefocus-683	75	15	be	be	AUX
finefocus-683	75	16	lost	lose	VERB
finefocus-683	75	17	if	if	SCONJ
finefocus-683	75	18	only	only	ADV
finefocus-683	75	19	the	the	DET
finefocus-683	75	20	tree	tree	NOUN
finefocus-683	75	21	is	be	AUX
finefocus-683	75	22	viewed	view	VERB
finefocus-683	75	23	.	.	PUNCT
finefocus-683	76	1	therefore	therefore	ADV
finefocus-683	76	2	,	,	PUNCT
finefocus-683	76	3	to	to	PART
finefocus-683	76	4	ensure	ensure	VERB
finefocus-683	76	5	that	that	SCONJ
finefocus-683	76	6	the	the	DET
finefocus-683	76	7	tree	tree	NOUN
finefocus-683	76	8	generation	generation	NOUN
finefocus-683	76	9	step	step	NOUN
finefocus-683	76	10	was	be	AUX
finefocus-683	76	11	not	not	PART
finefocus-683	76	12	flawed	flaw	VERB
finefocus-683	76	13	by	by	ADP
finefocus-683	76	14	faulty	faulty	ADJ
finefocus-683	76	15	input	input	NOUN
finefocus-683	76	16	data	datum	NOUN
finefocus-683	76	17	,	,	PUNCT
finefocus-683	76	18	we	we	PRON
finefocus-683	76	19	checked	check	VERB
finefocus-683	76	20	the	the	DET
finefocus-683	76	21	msas	msa	NOUN
finefocus-683	76	22	with	with	ADP
finefocus-683	76	23	bbb	bbb	PROPN
finefocus-683	76	24	,	,	PUNCT
finefocus-683	76	25	a	a	DET
finefocus-683	76	26	msa	msa	PROPN
finefocus-683	76	27	editor	editor	NOUN
finefocus-683	76	28	that	that	PRON
finefocus-683	76	29	also	also	ADV
finefocus-683	76	30	provides	provide	VERB
finefocus-683	76	31	highlighting	highlighting	NOUN
finefocus-683	76	32	of	of	ADP
finefocus-683	76	33	the	the	DET
finefocus-683	76	34	differences	difference	NOUN
finefocus-683	76	35	between	between	ADP
finefocus-683	76	36	pairs	pair	NOUN
finefocus-683	76	37	of	of	ADP
finefocus-683	76	38	sequences	sequence	NOUN
finefocus-683	76	39	in	in	ADP
finefocus-683	76	40	the	the	DET
finefocus-683	76	41	msas	msa	NOUN
finefocus-683	76	42	.	.	PUNCT
finefocus-683	77	1	this	this	PRON
finefocus-683	77	2	helps	help	VERB
finefocus-683	77	3	the	the	DET
finefocus-683	77	4	researcher	researcher	NOUN
finefocus-683	77	5	recognize	recognize	VERB
finefocus-683	77	6	msa	msa	PROPN
finefocus-683	77	7	regions	region	NOUN
finefocus-683	77	8	that	that	PRON
finefocus-683	77	9	have	have	VERB
finefocus-683	77	10	inconsistent	inconsistent	ADJ
finefocus-683	77	11	similarity	similarity	NOUN
finefocus-683	77	12	levels	level	NOUN
finefocus-683	77	13	and	and	CCONJ
finefocus-683	77	14	may	may	AUX
finefocus-683	77	15	be	be	AUX
finefocus-683	77	16	the	the	DET
finefocus-683	77	17	result	result	NOUN
finefocus-683	77	18	of	of	ADP
finefocus-683	77	19	gene	gene	NOUN
finefocus-683	77	20	fusion	fusion	NOUN
finefocus-683	77	21	events	event	NOUN
finefocus-683	77	22	.	.	PUNCT
finefocus-683	78	1	in	in	ADP
finefocus-683	78	2	addition	addition	NOUN
finefocus-683	78	3	to	to	ADP
finefocus-683	78	4	displaying	display	VERB
finefocus-683	78	5	sequence	sequence	NOUN
finefocus-683	78	6	alignments	alignment	NOUN
finefocus-683	78	7	,	,	PUNCT
finefocus-683	78	8	bbb	bbb	PROPN
finefocus-683	78	9	is	be	AUX
finefocus-683	78	10	capable	capable	ADJ
finefocus-683	78	11	of	of	ADP
finefocus-683	78	12	generating	generate	VERB
finefocus-683	78	13	a	a	DET
finefocus-683	78	14	“	"	PUNCT
finefocus-683	78	15	summary	summary	NOUN
finefocus-683	78	16	view	view	NOUN
finefocus-683	78	17	”	"	PUNCT
finefocus-683	78	18	of	of	ADP
finefocus-683	78	19	sequence	sequence	NOUN
finefocus-683	78	20	alignments	alignment	NOUN
finefocus-683	78	21	,	,	PUNCT
finefocus-683	78	22	that	that	PRON
finefocus-683	78	23	captures	capture	VERB
finefocus-683	78	24	the	the	DET
finefocus-683	78	25	positions	position	NOUN
finefocus-683	78	26	of	of	ADP
finefocus-683	78	27	snps	snps	PROPN
finefocus-683	78	28	and	and	CCONJ
finefocus-683	78	29	indel	indel	PROPN
finefocus-683	78	30	information	information	NOUN
finefocus-683	78	31	to	to	PART
finefocus-683	78	32	allow	allow	VERB
finefocus-683	78	33	large	large	ADJ
finefocus-683	78	34	msas	msa	NOUN
finefocus-683	78	35	to	to	PART
finefocus-683	78	36	be	be	AUX
finefocus-683	78	37	shown	show	VERB
finefocus-683	78	38	on	on	ADP
finefocus-683	78	39	a	a	DET
finefocus-683	78	40	single	single	ADJ
finefocus-683	78	41	page	page	NOUN
finefocus-683	78	42	.	.	PUNCT
finefocus-683	79	1	figures	figure	NOUN
finefocus-683	79	2	2	2	NUM
finefocus-683	79	3	and	and	CCONJ
finefocus-683	79	4	3	3	NUM
finefocus-683	79	5	illustrate	illustrate	VERB
finefocus-683	79	6	the	the	DET
finefocus-683	79	7	use	use	NOUN
finefocus-683	79	8	of	of	ADP
finefocus-683	79	9	bbb	bbb	PROPN
finefocus-683	79	10	to	to	PART
finefocus-683	79	11	view	view	VERB
finefocus-683	79	12	parts	part	NOUN
finefocus-683	79	13	of	of	ADP
finefocus-683	79	14	mgf-110	mgf-110	PROPN
finefocus-683	79	15	.	.	PUNCT
finefocus-683	80	1	a	a	DET
finefocus-683	80	2	truncation	truncation	NOUN
finefocus-683	80	3	of	of	ADP
finefocus-683	80	4	asfv	asfv	PROPN
finefocus-683	80	5	-	-	PUNCT
finefocus-683	80	6	geo	geo	PROPN
finefocus-683	80	7	mgf-110	mgf-110	PROPN
finefocus-683	80	8	-	-	PUNCT
finefocus-683	80	9	1l	1l	PROPN
finefocus-683	80	10	is	be	AUX
finefocus-683	80	11	shown	show	VERB
finefocus-683	80	12	together	together	ADV
finefocus-683	80	13	with	with	ADP
finefocus-683	80	14	previous	previous	ADJ
finefocus-683	80	15	alternate	alternate	ADJ
finefocus-683	80	16	naming	naming	NOUN
finefocus-683	80	17	of	of	ADP
finefocus-683	80	18	asfv	asfv	PROPN
finefocus-683	80	19	mgf-110	mgf-110	PROPN
finefocus-683	80	20	-	-	PUNCT
finefocus-683	80	21	3l	3l	NUM
finefocus-683	80	22	orthologs	ortholog	NOUN
finefocus-683	80	23	(	(	PUNCT
finefocus-683	80	24	figure	figure	NOUN
finefocus-683	80	25	2	2	NUM
finefocus-683	80	26	)	)	PUNCT
finefocus-683	80	27	.	.	PUNCT
finefocus-683	81	1	in	in	ADP
finefocus-683	81	2	mgf-110	mgf-110	PROPN
finefocus-683	81	3	,	,	PUNCT
finefocus-683	81	4	we	we	PRON
finefocus-683	81	5	propose	propose	VERB
finefocus-683	81	6	13	13	NUM
finefocus-683	81	7	paralogs	paralog	NOUN
finefocus-683	81	8	whereas	whereas	SCONJ
finefocus-683	81	9	14	14	NUM
finefocus-683	81	10	had	have	AUX
finefocus-683	81	11	been	be	AUX
finefocus-683	81	12	previously	previously	ADV
finefocus-683	81	13	annotated	annotate	VERB
finefocus-683	81	14	among	among	ADP
finefocus-683	81	15	the	the	DET
finefocus-683	81	16	16	16	NUM
finefocus-683	81	17	genomes	genome	NOUN
finefocus-683	81	18	because	because	SCONJ
finefocus-683	81	19	fragments	fragment	NOUN
finefocus-683	81	20	of	of	ADP
finefocus-683	81	21	a	a	DET
finefocus-683	81	22	single	single	ADJ
finefocus-683	81	23	gene	gene	NOUN
finefocus-683	81	24	had	have	AUX
finefocus-683	81	25	been	be	AUX
finefocus-683	81	26	annotated	annotate	VERB
finefocus-683	81	27	separately	separately	ADV
finefocus-683	81	28	.	.	PUNCT
finefocus-683	82	1	figure	figure	NOUN
finefocus-683	82	2	3	3	NUM
finefocus-683	82	3	shows	show	VERB
finefocus-683	82	4	several	several	ADJ
finefocus-683	82	5	of	of	ADP
finefocus-683	82	6	the	the	DET
finefocus-683	82	7	difficulties	difficulty	NOUN
finefocus-683	82	8	faced	face	VERB
finefocus-683	82	9	figure	figure	NOUN
finefocus-683	82	10	4	4	NUM
finefocus-683	82	11	.	.	NOUN
finefocus-683	82	12	dotplot	dotplot	NOUN
finefocus-683	82	13	of	of	ADP
finefocus-683	82	14	mgf-360	mgf-360	NOUN
finefocus-683	82	15	genes	gene	NOUN
finefocus-683	82	16	.	.	PUNCT
finefocus-683	83	1	the	the	DET
finefocus-683	83	2	horizontal	horizontal	ADJ
finefocus-683	83	3	sequence	sequence	NOUN
finefocus-683	83	4	contains	contain	VERB
finefocus-683	83	5	asfv	asfv	NOUN
finefocus-683	83	6	-	-	PUNCT
finefocus-683	83	7	mkuzi	mkuzi	NOUN
finefocus-683	83	8	mgf-360	mgf-360	NOUN
finefocus-683	83	9	-	-	PUNCT
finefocus-683	83	10	1l	1l	NUM
finefocus-683	83	11	and	and	CCONJ
finefocus-683	83	12	mgf-360	mgf-360	NOUN
finefocus-683	83	13	-	-	PUNCT
finefocus-683	83	14	2l	2l	NOUN
finefocus-683	83	15	genes	gene	NOUN
finefocus-683	83	16	(	(	PUNCT
finefocus-683	83	17	blue	blue	ADJ
finefocus-683	83	18	arrows	arrow	NOUN
finefocus-683	83	19	)	)	PUNCT
finefocus-683	83	20	.	.	PUNCT
finefocus-683	84	1	the	the	DET
finefocus-683	84	2	vertical	vertical	ADJ
finefocus-683	84	3	axis	axis	NOUN
finefocus-683	84	4	represents	represent	VERB
finefocus-683	84	5	3	3	NUM
finefocus-683	84	6	sequences	sequence	NOUN
finefocus-683	84	7	;	;	PUNCT
finefocus-683	84	8	the	the	DET
finefocus-683	84	9	top	top	ADJ
finefocus-683	84	10	2	2	NUM
finefocus-683	84	11	panels	panel	NOUN
finefocus-683	84	12	are	be	AUX
finefocus-683	84	13	the	the	DET
finefocus-683	84	14	asfvmkuzi	asfvmkuzi	PROPN
finefocus-683	84	15	mgf-360	mgf-360	PROPN
finefocus-683	84	16	-	-	PUNCT
finefocus-683	84	17	1l	1l	NUM
finefocus-683	84	18	and	and	CCONJ
finefocus-683	84	19	mgf-360	mgf-360	NOUN
finefocus-683	84	20	-	-	PUNCT
finefocus-683	84	21	2l	2l	NOUN
finefocus-683	84	22	genes	gene	NOUN
finefocus-683	84	23	as	as	ADP
finefocus-683	84	24	controls	control	NOUN
finefocus-683	84	25	and	and	CCONJ
finefocus-683	84	26	the	the	DET
finefocus-683	84	27	bottom	bottom	ADJ
finefocus-683	84	28	panel	panel	NOUN
finefocus-683	84	29	represents	represent	VERB
finefocus-683	84	30	the	the	DET
finefocus-683	84	31	asfv	asfv	NOUN
finefocus-683	84	32	-	-	PUNCT
finefocus-683	84	33	e75	e75	VERB
finefocus-683	84	34	mgf-360	mgf-360	NOUN
finefocus-683	84	35	-	-	PUNCT
finefocus-683	84	36	1l/2l	1l/2l	NUM
finefocus-683	84	37	fusion	fusion	NOUN
finefocus-683	84	38	(	(	PUNCT
finefocus-683	84	39	red	red	ADJ
finefocus-683	84	40	arrow	arrow	NOUN
finefocus-683	84	41	)	)	PUNCT
finefocus-683	84	42	.	.	PUNCT
finefocus-683	85	1	the	the	DET
finefocus-683	85	2	dashed	dash	VERB
finefocus-683	85	3	line	line	NOUN
finefocus-683	85	4	in	in	ADP
finefocus-683	85	5	the	the	DET
finefocus-683	85	6	bottom	bottom	ADJ
finefocus-683	85	7	panel	panel	NOUN
finefocus-683	85	8	separates	separate	VERB
finefocus-683	85	9	the	the	DET
finefocus-683	85	10	5	5	NUM
finefocus-683	85	11	’	'	PUNCT
finefocus-683	85	12	half	half	NOUN
finefocus-683	85	13	of	of	ADP
finefocus-683	85	14	360	360	NUM
finefocus-683	85	15	-	-	PUNCT
finefocus-683	85	16	2l	2l	NOUN
finefocus-683	85	17	and	and	CCONJ
finefocus-683	85	18	the	the	DET
finefocus-683	85	19	3	3	NUM
finefocus-683	85	20	’	’	PART
finefocus-683	85	21	half	half	NOUN
finefocus-683	85	22	of	of	ADP
finefocus-683	85	23	360	360	NUM
finefocus-683	85	24	-	-	SYM
finefocus-683	85	25	1l	1l	NUM
finefocus-683	85	26	.	.	PUNCT
finefocus-683	86	1	self	self	NOUN
finefocus-683	86	2	-	-	PUNCT
finefocus-683	86	3	plots	plot	NOUN
finefocus-683	86	4	of	of	ADP
finefocus-683	86	5	genes	gene	NOUN
finefocus-683	86	6	generate	generate	VERB
finefocus-683	86	7	a	a	DET
finefocus-683	86	8	solid	solid	ADJ
finefocus-683	86	9	diagonal	diagonal	ADJ
finefocus-683	86	10	black	black	ADJ
finefocus-683	86	11	line	line	NOUN
finefocus-683	86	12	whereas	whereas	SCONJ
finefocus-683	86	13	plots	plot	NOUN
finefocus-683	86	14	of	of	ADP
finefocus-683	86	15	paralogs	paralog	NOUN
finefocus-683	86	16	produce	produce	VERB
finefocus-683	86	17	fainter	faint	ADJ
finefocus-683	86	18	intermittent	intermittent	ADJ
finefocus-683	86	19	lines	line	NOUN
finefocus-683	86	20	.	.	PUNCT
finefocus-683	87	1	figure	figure	VERB
finefocus-683	87	2	5	5	NUM
finefocus-683	87	3	.	.	NOUN
finefocus-683	87	4	example	example	NOUN
finefocus-683	87	5	of	of	ADP
finefocus-683	87	6	summaries	summary	NOUN
finefocus-683	87	7	showing	show	VERB
finefocus-683	87	8	organization	organization	NOUN
finefocus-683	87	9	of	of	ADP
finefocus-683	87	10	mgf-505	mgf-505	PROPN
finefocus-683	87	11	.	.	PUNCT
finefocus-683	88	1	the	the	DET
finefocus-683	88	2	asfv	asfv	NOUN
finefocus-683	88	3	strain	strain	NOUN
finefocus-683	88	4	is	be	AUX
finefocus-683	88	5	given	give	VERB
finefocus-683	88	6	in	in	ADP
finefocus-683	88	7	the	the	DET
finefocus-683	88	8	red	red	ADJ
finefocus-683	88	9	boxes	box	NOUN
finefocus-683	88	10	at	at	ADP
finefocus-683	88	11	the	the	DET
finefocus-683	88	12	left	left	NOUN
finefocus-683	88	13	.	.	PUNCT
finefocus-683	89	1	paralog	paralog	NOUN
finefocus-683	89	2	names	name	NOUN
finefocus-683	89	3	are	be	AUX
finefocus-683	89	4	shown	show	VERB
finefocus-683	89	5	in	in	ADP
finefocus-683	89	6	the	the	DET
finefocus-683	89	7	boxes	box	NOUN
finefocus-683	89	8	at	at	ADP
finefocus-683	89	9	the	the	DET
finefocus-683	89	10	top	top	NOUN
finefocus-683	89	11	of	of	ADP
finefocus-683	89	12	the	the	DET
finefocus-683	89	13	diagram	diagram	NOUN
finefocus-683	89	14	along	along	ADP
finefocus-683	89	15	with	with	ADP
finefocus-683	89	16	the	the	DET
finefocus-683	89	17	size	size	NOUN
finefocus-683	89	18	of	of	ADP
finefocus-683	89	19	the	the	DET
finefocus-683	89	20	ortholog	ortholog	NOUN
finefocus-683	89	21	from	from	ADP
finefocus-683	89	22	the	the	DET
finefocus-683	89	23	reference	reference	NOUN
finefocus-683	89	24	genome	genome	NOUN
finefocus-683	89	25	,	,	PUNCT
finefocus-683	89	26	mkuzi	mkuzi	PROPN
finefocus-683	89	27	.	.	PUNCT
finefocus-683	90	1	the	the	DET
finefocus-683	90	2	annotation	annotation	NOUN
finefocus-683	90	3	of	of	ADP
finefocus-683	90	4	each	each	DET
finefocus-683	90	5	gene	gene	NOUN
finefocus-683	90	6	(	(	PUNCT
finefocus-683	90	7	arrow	arrow	NOUN
finefocus-683	90	8	head	head	NOUN
finefocus-683	90	9	indicates	indicate	VERB
finefocus-683	90	10	direction	direction	NOUN
finefocus-683	90	11	of	of	ADP
finefocus-683	90	12	transcription	transcription	NOUN
finefocus-683	90	13	)	)	PUNCT
finefocus-683	90	14	is	be	AUX
finefocus-683	90	15	in	in	ADP
finefocus-683	90	16	two	two	NUM
finefocus-683	90	17	parts	part	NOUN
finefocus-683	90	18	:	:	PUNCT
finefocus-683	90	19	the	the	DET
finefocus-683	90	20	paralog	paralog	NOUN
finefocus-683	90	21	group	group	NOUN
finefocus-683	90	22	followed	follow	VERB
finefocus-683	90	23	by	by	ADP
finefocus-683	90	24	the	the	DET
finefocus-683	90	25	gene	gene	NOUN
finefocus-683	90	26	number	number	NOUN
finefocus-683	90	27	of	of	ADP
finefocus-683	90	28	the	the	DET
finefocus-683	90	29	virus	virus	NOUN
finefocus-683	90	30	strain	strain	VERB
finefocus-683	90	31	.	.	PUNCT
finefocus-683	91	1	if	if	SCONJ
finefocus-683	91	2	the	the	DET
finefocus-683	91	3	paralog	paralog	NOUN
finefocus-683	91	4	annotation	annotation	NOUN
finefocus-683	91	5	is	be	AUX
finefocus-683	91	6	incorrect	incorrect	ADJ
finefocus-683	91	7	,	,	PUNCT
finefocus-683	91	8	it	it	PRON
finefocus-683	91	9	is	be	AUX
finefocus-683	91	10	labelled	label	VERB
finefocus-683	91	11	in	in	ADP
finefocus-683	91	12	red	red	PROPN
finefocus-683	91	13	.	.	PUNCT
finefocus-683	92	1	the	the	DET
finefocus-683	92	2	gene	gene	NOUN
finefocus-683	92	3	box	box	NOUN
finefocus-683	92	4	size	size	NOUN
finefocus-683	92	5	represents	represent	VERB
finefocus-683	92	6	the	the	DET
finefocus-683	92	7	relative	relative	ADJ
finefocus-683	92	8	gene	gene	NOUN
finefocus-683	92	9	size	size	NOUN
finefocus-683	92	10	of	of	ADP
finefocus-683	92	11	orthologs	ortholog	NOUN
finefocus-683	92	12	,	,	PUNCT
finefocus-683	92	13	but	but	CCONJ
finefocus-683	92	14	is	be	AUX
finefocus-683	92	15	not	not	PART
finefocus-683	92	16	to	to	PART
finefocus-683	92	17	scale	scale	VERB
finefocus-683	92	18	,	,	PUNCT
finefocus-683	92	19	nor	nor	CCONJ
finefocus-683	92	20	does	do	AUX
finefocus-683	92	21	it	it	PRON
finefocus-683	92	22	reflect	reflect	VERB
finefocus-683	92	23	the	the	DET
finefocus-683	92	24	size	size	NOUN
finefocus-683	92	25	relationship	relationship	NOUN
finefocus-683	92	26	between	between	ADP
finefocus-683	92	27	paralogs	paralog	NOUN
finefocus-683	92	28	.	.	PUNCT
finefocus-683	93	1	genes	gene	NOUN
finefocus-683	93	2	connected	connect	VERB
finefocus-683	93	3	by	by	ADP
finefocus-683	93	4	grey	grey	PROPN
finefocus-683	93	5	boxes	box	NOUN
finefocus-683	93	6	indicate	indicate	VERB
finefocus-683	93	7	the	the	DET
finefocus-683	93	8	fusion	fusion	NOUN
finefocus-683	93	9	of	of	ADP
finefocus-683	93	10	two	two	NUM
finefocus-683	93	11	orthologs	ortholog	NOUN
finefocus-683	93	12	.	.	PUNCT
finefocus-683	94	1	african	african	ADJ
finefocus-683	94	2	swine	swine	ADJ
finefocus-683	94	3	fever	fever	NOUN
finefocus-683	94	4	virus	virus	NOUN
finefocus-683	94	5	•	•	ADV
finefocus-683	94	6	161160	161160	NUM
finefocus-683	94	7	•	•	NUM
finefocus-683	94	8	fine	fine	ADJ
finefocus-683	94	9	focus	focus	NOUN
finefocus-683	94	10	,	,	PUNCT
finefocus-683	94	11	vol	vol	NOUN
finefocus-683	94	12	.	.	NOUN
finefocus-683	94	13	3	3	NUM
finefocus-683	94	14	(	(	PUNCT
finefocus-683	94	15	2	2	NUM
finefocus-683	94	16	)	)	PUNCT
finefocus-683	94	17	in	in	ADP
finefocus-683	94	18	trying	try	VERB
finefocus-683	94	19	to	to	PART
finefocus-683	94	20	annotate	annotate	VERB
finefocus-683	94	21	the	the	DET
finefocus-683	94	22	mgfs	mgfs	NOUN
finefocus-683	94	23	consistently	consistently	ADV
finefocus-683	94	24	:	:	PUNCT
finefocus-683	94	25	1	1	X
finefocus-683	94	26	)	)	PUNCT
finefocus-683	94	27	mgf-110	mgf-110	PROPN
finefocus-683	94	28	-	-	PUNCT
finefocus-683	94	29	11l	11l	PROPN
finefocus-683	94	30	is	be	AUX
finefocus-683	94	31	fragmented	fragment	VERB
finefocus-683	94	32	in	in	ADP
finefocus-683	94	33	several	several	ADJ
finefocus-683	94	34	viruses	virus	NOUN
finefocus-683	94	35	,	,	PUNCT
finefocus-683	94	36	2	2	X
finefocus-683	94	37	)	)	PUNCT
finefocus-683	94	38	a	a	DET
finefocus-683	94	39	large	large	ADJ
finefocus-683	94	40	deletion	deletion	NOUN
finefocus-683	94	41	in	in	ADP
finefocus-683	94	42	asfv	asfv	NOUN
finefocus-683	94	43	-	-	PUNCT
finefocus-683	94	44	mwi	mwi	NOUN
finefocus-683	94	45	creates	create	VERB
finefocus-683	94	46	a	a	DET
finefocus-683	94	47	fusion	fusion	NOUN
finefocus-683	94	48	of	of	ADP
finefocus-683	94	49	mgf-110	mgf-110	PROPN
finefocus-683	94	50	-	-	PUNCT
finefocus-683	94	51	9l/11l	9l/11l	NOUN
finefocus-683	94	52	,	,	PUNCT
finefocus-683	94	53	and	and	CCONJ
finefocus-683	94	54	3	3	X
finefocus-683	94	55	)	)	PUNCT
finefocus-683	94	56	large	large	ADJ
finefocus-683	94	57	indels	indel	NOUN
finefocus-683	94	58	(	(	PUNCT
finefocus-683	94	59	red	red	ADJ
finefocus-683	94	60	and	and	CCONJ
finefocus-683	94	61	green	green	ADJ
finefocus-683	94	62	blocks	block	NOUN
finefocus-683	94	63	,	,	PUNCT
finefocus-683	94	64	which	which	PRON
finefocus-683	94	65	illustrate	illustrate	VERB
finefocus-683	94	66	insertion	insertion	NOUN
finefocus-683	94	67	or	or	CCONJ
finefocus-683	94	68	deletion	deletion	NOUN
finefocus-683	94	69	with	with	ADP
finefocus-683	94	70	respect	respect	NOUN
finefocus-683	94	71	to	to	ADP
finefocus-683	94	72	the	the	DET
finefocus-683	94	73	reference	reference	NOUN
finefocus-683	94	74	)	)	PUNCT
finefocus-683	94	75	create	create	VERB
finefocus-683	94	76	orthologs	ortholog	NOUN
finefocus-683	94	77	of	of	ADP
finefocus-683	94	78	significantly	significantly	ADV
finefocus-683	94	79	different	different	ADJ
finefocus-683	94	80	sizes	size	NOUN
finefocus-683	94	81	(	(	PUNCT
finefocus-683	94	82	mgf110	mgf110	NOUN
finefocus-683	94	83	-	-	PUNCT
finefocus-683	94	84	12l	12l	NUM
finefocus-683	94	85	)	)	PUNCT
finefocus-683	94	86	.	.	PUNCT
finefocus-683	95	1	since	since	SCONJ
finefocus-683	95	2	the	the	DET
finefocus-683	95	3	orfs	orf	NOUN
finefocus-683	95	4	are	be	AUX
finefocus-683	95	5	displayed	display	VERB
finefocus-683	95	6	by	by	ADP
finefocus-683	95	7	bbb	bbb	PROPN
finefocus-683	95	8	across	across	ADP
finefocus-683	95	9	gapped	gapped	NOUN
finefocus-683	95	10	alignments	alignment	NOUN
finefocus-683	95	11	,	,	PUNCT
finefocus-683	95	12	they	they	PRON
finefocus-683	95	13	are	be	AUX
finefocus-683	95	14	not	not	PART
finefocus-683	95	15	accurate	accurate	ADJ
finefocus-683	95	16	representations	representation	NOUN
finefocus-683	95	17	of	of	ADP
finefocus-683	95	18	their	their	PRON
finefocus-683	95	19	true	true	ADJ
finefocus-683	95	20	size	size	NOUN
finefocus-683	95	21	.	.	PUNCT
finefocus-683	96	1	although	although	SCONJ
finefocus-683	96	2	msas	msa	NOUN
finefocus-683	96	3	do	do	AUX
finefocus-683	96	4	show	show	VERB
finefocus-683	96	5	raw	raw	ADJ
finefocus-683	96	6	data	datum	NOUN
finefocus-683	96	7	(	(	PUNCT
finefocus-683	96	8	the	the	DET
finefocus-683	96	9	actual	actual	ADJ
finefocus-683	96	10	aligned	aligned	ADJ
finefocus-683	96	11	dna	dna	PROPN
finefocus-683	96	12	sequences	sequence	NOUN
finefocus-683	96	13	)	)	PUNCT
finefocus-683	96	14	,	,	PUNCT
finefocus-683	96	15	because	because	SCONJ
finefocus-683	96	16	they	they	PRON
finefocus-683	96	17	display	display	VERB
finefocus-683	96	18	a	a	DET
finefocus-683	96	19	one	one	NUM
finefocus-683	96	20	-	-	PUNCT
finefocus-683	96	21	dimensional	dimensional	ADJ
finefocus-683	96	22	representation	representation	NOUN
finefocus-683	96	23	of	of	ADP
finefocus-683	96	24	the	the	DET
finefocus-683	96	25	alignment	alignment	NOUN
finefocus-683	96	26	they	they	PRON
finefocus-683	96	27	are	be	AUX
finefocus-683	96	28	of	of	ADP
finefocus-683	96	29	less	less	ADJ
finefocus-683	96	30	use	use	NOUN
finefocus-683	96	31	when	when	SCONJ
finefocus-683	96	32	regions	region	NOUN
finefocus-683	96	33	of	of	ADP
finefocus-683	96	34	sequences	sequence	NOUN
finefocus-683	96	35	may	may	AUX
finefocus-683	96	36	have	have	AUX
finefocus-683	96	37	been	be	AUX
finefocus-683	96	38	rearranged	rearrange	VERB
finefocus-683	96	39	.	.	PUNCT
finefocus-683	97	1	in	in	ADP
finefocus-683	97	2	such	such	ADJ
finefocus-683	97	3	situations	situation	NOUN
finefocus-683	97	4	,	,	PUNCT
finefocus-683	97	5	the	the	DET
finefocus-683	97	6	twodimensional	twodimensional	ADJ
finefocus-683	97	7	presentation	presentation	NOUN
finefocus-683	97	8	of	of	ADP
finefocus-683	97	9	global	global	ADJ
finefocus-683	97	10	sequence	sequence	NOUN
finefocus-683	97	11	comparisons	comparison	NOUN
finefocus-683	97	12	from	from	ADP
finefocus-683	97	13	a	a	DET
finefocus-683	97	14	dotplot	dotplot	NOUN
finefocus-683	97	15	can	can	AUX
finefocus-683	97	16	better	well	ADV
finefocus-683	97	17	show	show	VERB
finefocus-683	97	18	rearrangements	rearrangement	NOUN
finefocus-683	97	19	.	.	PUNCT
finefocus-683	98	1	for	for	ADP
finefocus-683	98	2	example	example	NOUN
finefocus-683	98	3	,	,	PUNCT
finefocus-683	98	4	figure	figure	NOUN
finefocus-683	98	5	4	4	NUM
finefocus-683	98	6	shows	show	VERB
finefocus-683	98	7	the	the	DET
finefocus-683	98	8	comparison	comparison	NOUN
finefocus-683	98	9	of	of	ADP
finefocus-683	98	10	the	the	DET
finefocus-683	98	11	asfv	asfv	NOUN
finefocus-683	98	12	-	-	PUNCT
finefocus-683	98	13	e75	e75	VERB
finefocus-683	98	14	mgf-3601l/2l	mgf-3601l/2l	ADJ
finefocus-683	98	15	fusion	fusion	NOUN
finefocus-683	98	16	with	with	ADP
finefocus-683	98	17	the	the	DET
finefocus-683	98	18	2	2	NUM
finefocus-683	98	19	parental	parental	ADJ
finefocus-683	98	20	orthologs	ortholog	NOUN
finefocus-683	98	21	.	.	PUNCT
finefocus-683	99	1	it	it	PRON
finefocus-683	99	2	also	also	ADV
finefocus-683	99	3	shows	show	VERB
finefocus-683	99	4	the	the	DET
finefocus-683	99	5	results	result	NOUN
finefocus-683	99	6	of	of	ADP
finefocus-683	99	7	paralog	paralog	NOUN
finefocus-683	99	8	comparison	comparison	NOUN
finefocus-683	99	9	(	(	PUNCT
finefocus-683	99	10	1l	1l	NUM
finefocus-683	99	11	and	and	CCONJ
finefocus-683	99	12	2l	2l	NUM
finefocus-683	99	13	for	for	ADP
finefocus-683	99	14	asfv	asfv	NOUN
finefocus-683	99	15	mkuzi	mkuzi	PROPN
finefocus-683	99	16	)	)	PUNCT
finefocus-683	99	17	and	and	CCONJ
finefocus-683	99	18	ortholog	ortholog	PROPN
finefocus-683	99	19	comparison	comparison	NOUN
finefocus-683	99	20	(	(	PUNCT
finefocus-683	99	21	1l	1l	NUM
finefocus-683	99	22	for	for	ADP
finefocus-683	99	23	asfv	asfv	NOUN
finefocus-683	99	24	-	-	PUNCT
finefocus-683	99	25	e75	e75	PROPN
finefocus-683	99	26	and	and	CCONJ
finefocus-683	99	27	asfvmkuzi	asfvmkuzi	PROPN
finefocus-683	99	28	)	)	PUNCT
finefocus-683	99	29	.	.	PUNCT
finefocus-683	100	1	after	after	ADP
finefocus-683	100	2	reviewing	review	VERB
finefocus-683	100	3	data	datum	NOUN
finefocus-683	100	4	from	from	ADP
finefocus-683	100	5	phylogenetic	phylogenetic	ADJ
finefocus-683	100	6	trees	tree	NOUN
finefocus-683	100	7	,	,	PUNCT
finefocus-683	100	8	msas	msa	NOUN
finefocus-683	100	9	and	and	CCONJ
finefocus-683	100	10	dotplots	dotplot	NOUN
finefocus-683	100	11	,	,	PUNCT
finefocus-683	100	12	we	we	PRON
finefocus-683	100	13	constructed	construct	VERB
finefocus-683	100	14	a	a	DET
finefocus-683	100	15	summary	summary	NOUN
finefocus-683	100	16	diagram	diagram	NOUN
finefocus-683	100	17	for	for	ADP
finefocus-683	100	18	each	each	DET
finefocus-683	100	19	mgf	mgf	NOUN
finefocus-683	100	20	.	.	PUNCT
finefocus-683	101	1	these	these	PRON
finefocus-683	101	2	are	be	AUX
finefocus-683	101	3	presented	present	VERB
finefocus-683	101	4	as	as	ADP
finefocus-683	101	5	supplementary	supplementary	ADJ
finefocus-683	101	6	figures	figure	NOUN
finefocus-683	101	7	1	1	NUM
finefocus-683	101	8	-	-	SYM
finefocus-683	101	9	6	6	NUM
finefocus-683	101	10	,	,	PUNCT
finefocus-683	101	11	which	which	PRON
finefocus-683	101	12	are	be	AUX
finefocus-683	101	13	provided	provide	VERB
finefocus-683	101	14	at	at	ADP
finefocus-683	101	15	a	a	DET
finefocus-683	101	16	large	large	ADJ
finefocus-683	101	17	scale	scale	NOUN
finefocus-683	101	18	to	to	PART
finefocus-683	101	19	present	present	VERB
finefocus-683	101	20	much	much	ADV
finefocus-683	101	21	greater	great	ADJ
finefocus-683	101	22	detail	detail	NOUN
finefocus-683	101	23	.	.	PUNCT
finefocus-683	102	1	for	for	ADP
finefocus-683	102	2	each	each	DET
finefocus-683	102	3	summary	summary	NOUN
finefocus-683	102	4	diagram	diagram	NOUN
finefocus-683	102	5	,	,	PUNCT
finefocus-683	102	6	there	there	PRON
finefocus-683	102	7	is	be	VERB
finefocus-683	102	8	also	also	ADV
finefocus-683	102	9	an	an	DET
finefocus-683	102	10	“	"	PUNCT
finefocus-683	102	11	information	information	NOUN
finefocus-683	102	12	sheet	sheet	NOUN
finefocus-683	102	13	”	"	PUNCT
finefocus-683	102	14	that	that	PRON
finefocus-683	102	15	explains	explain	VERB
finefocus-683	102	16	the	the	DET
finefocus-683	102	17	representations	representation	NOUN
finefocus-683	102	18	of	of	ADP
finefocus-683	102	19	the	the	DET
finefocus-683	102	20	mgfs	mgfs	NOUN
finefocus-683	102	21	(	(	PUNCT
finefocus-683	102	22	supplementary	supplementary	ADJ
finefocus-683	102	23	figures	figure	NOUN
finefocus-683	102	24	7	7	NUM
finefocus-683	102	25	-	-	SYM
finefocus-683	102	26	12	12	NUM
finefocus-683	102	27	)	)	PUNCT
finefocus-683	102	28	.	.	PUNCT
finefocus-683	103	1	these	these	DET
finefocus-683	103	2	figures	figure	NOUN
finefocus-683	103	3	are	be	AUX
finefocus-683	103	4	also	also	ADV
finefocus-683	103	5	available	available	ADJ
finefocus-683	103	6	from	from	ADP
finefocus-683	103	7	the	the	DET
finefocus-683	103	8	viral	viral	ADJ
finefocus-683	103	9	bioinformatics	bioinformatics	NOUN
finefocus-683	103	10	resource	resource	NOUN
finefocus-683	103	11	center	center	NOUN
finefocus-683	103	12	,	,	PUNCT
finefocus-683	103	13	in	in	ADP
finefocus-683	103	14	the	the	DET
finefocus-683	103	15	asfv	asfv	NOUN
finefocus-683	103	16	section	section	NOUN
finefocus-683	103	17	(	(	PUNCT
finefocus-683	103	18	https://	https://	PROPN
finefocus-683	103	19	virology.uvic.ca/organisms/dsdna-viruses/	virology.uvic.ca/organisms/dsdna-viruses/	ADP
finefocus-683	103	20	asfarviridae/	asfarviridae/	NUM
finefocus-683	103	21	)	)	PUNCT
finefocus-683	103	22	.	.	PUNCT
finefocus-683	104	1	figure	figure	NOUN
finefocus-683	104	2	5	5	NUM
finefocus-683	104	3	is	be	AUX
finefocus-683	104	4	an	an	DET
finefocus-683	104	5	example	example	NOUN
finefocus-683	104	6	of	of	ADP
finefocus-683	104	7	one	one	NUM
finefocus-683	104	8	of	of	ADP
finefocus-683	104	9	the	the	DET
finefocus-683	104	10	summary	summary	NOUN
finefocus-683	104	11	diagrams	diagram	NOUN
finefocus-683	104	12	and	and	CCONJ
finefocus-683	104	13	table	table	NOUN
finefocus-683	104	14	1	1	NUM
finefocus-683	104	15	shows	show	VERB
finefocus-683	104	16	the	the	DET
finefocus-683	104	17	varying	vary	VERB
finefocus-683	104	18	complexity	complexity	NOUN
finefocus-683	104	19	of	of	ADP
finefocus-683	104	20	the	the	DET
finefocus-683	104	21	individual	individual	ADJ
finefocus-683	104	22	mgfs	mgfs	NOUN
finefocus-683	104	23	.	.	PUNCT
finefocus-683	105	1	although	although	SCONJ
finefocus-683	105	2	many	many	ADJ
finefocus-683	105	3	of	of	ADP
finefocus-683	105	4	the	the	DET
finefocus-683	105	5	mgfs	mgfs	NOUN
finefocus-683	105	6	are	be	AUX
finefocus-683	105	7	similar	similar	ADJ
finefocus-683	105	8	among	among	ADP
finefocus-683	105	9	the	the	DET
finefocus-683	105	10	different	different	ADJ
finefocus-683	105	11	asfv	asfv	NOUN
finefocus-683	105	12	strains	strain	NOUN
finefocus-683	105	13	,	,	PUNCT
finefocus-683	105	14	there	there	PRON
finefocus-683	105	15	are	be	VERB
finefocus-683	105	16	some	some	DET
finefocus-683	105	17	differences	difference	NOUN
finefocus-683	105	18	that	that	PRON
finefocus-683	105	19	are	be	AUX
finefocus-683	105	20	specific	specific	ADJ
finefocus-683	105	21	to	to	ADP
finefocus-683	105	22	particular	particular	ADJ
finefocus-683	105	23	clades	clade	NOUN
finefocus-683	105	24	of	of	ADP
finefocus-683	105	25	the	the	DET
finefocus-683	105	26	asfvs	asfvs	PROPN
finefocus-683	105	27	.	.	PUNCT
finefocus-683	106	1	examples	example	NOUN
finefocus-683	106	2	of	of	ADP
finefocus-683	106	3	these	these	PRON
finefocus-683	106	4	are	be	AUX
finefocus-683	106	5	shown	show	VERB
finefocus-683	106	6	in	in	ADP
finefocus-683	106	7	figure	figure	NOUN
finefocus-683	106	8	6	6	NUM
finefocus-683	106	9	with	with	ADP
finefocus-683	106	10	a	a	DET
finefocus-683	106	11	full	full	ADJ
finefocus-683	106	12	genome	genome	NOUN
finefocus-683	106	13	phylogenetic	phylogenetic	ADJ
finefocus-683	106	14	tree	tree	NOUN
finefocus-683	106	15	provided	provide	VERB
finefocus-683	106	16	in	in	ADP
finefocus-683	106	17	figure	figure	NOUN
finefocus-683	106	18	7	7	NUM
finefocus-683	106	19	.	.	PUNCT
finefocus-683	106	20	from	from	ADP
finefocus-683	106	21	these	these	DET
finefocus-683	106	22	figures	figure	NOUN
finefocus-683	106	23	,	,	PUNCT
finefocus-683	106	24	it	it	PRON
finefocus-683	106	25	is	be	AUX
finefocus-683	106	26	clear	clear	ADJ
finefocus-683	106	27	that	that	SCONJ
finefocus-683	106	28	the	the	DET
finefocus-683	106	29	mgfs	mgfs	NOUN
finefocus-683	106	30	are	be	AUX
finefocus-683	106	31	relatively	relatively	ADV
finefocus-683	106	32	fluid	fluid	ADJ
finefocus-683	106	33	,	,	PUNCT
finefocus-683	106	34	with	with	ADP
finefocus-683	106	35	differences	difference	NOUN
finefocus-683	106	36	appearing	appear	VERB
finefocus-683	106	37	even	even	ADV
finefocus-683	106	38	between	between	ADP
finefocus-683	106	39	asfv	asfv	NOUN
finefocus-683	106	40	-	-	PUNCT
finefocus-683	106	41	e75	e75	PROPN
finefocus-683	106	42	and	and	CCONJ
finefocus-683	106	43	–	–	PUNCT
finefocus-683	106	44	l60	l60	NOUN
finefocus-683	106	45	,	,	PUNCT
finefocus-683	106	46	which	which	PRON
finefocus-683	106	47	are	be	AUX
finefocus-683	106	48	very	very	ADV
finefocus-683	106	49	similar	similar	ADJ
finefocus-683	106	50	.	.	PUNCT
finefocus-683	107	1	however	however	ADV
finefocus-683	107	2	,	,	PUNCT
finefocus-683	107	3	some	some	PRON
finefocus-683	107	4	of	of	ADP
finefocus-683	107	5	this	this	DET
finefocus-683	107	6	variation	variation	NOUN
finefocus-683	107	7	is	be	AUX
finefocus-683	107	8	expected	expect	VERB
finefocus-683	107	9	given	give	VERB
finefocus-683	107	10	the	the	DET
finefocus-683	107	11	overall	overall	ADJ
finefocus-683	107	12	variation	variation	NOUN
finefocus-683	107	13	between	between	ADP
finefocus-683	107	14	the	the	DET
finefocus-683	107	15	asfv	asfv	NOUN
finefocus-683	107	16	strains	strain	VERB
finefocus-683	107	17	.	.	PUNCT
finefocus-683	108	1	interestingly	interestingly	ADV
finefocus-683	108	2	,	,	PUNCT
finefocus-683	108	3	although	although	SCONJ
finefocus-683	108	4	these	these	DET
finefocus-683	108	5	viruses	virus	NOUN
finefocus-683	108	6	are	be	AUX
finefocus-683	108	7	all	all	PRON
finefocus-683	108	8	denoted	denote	VERB
finefocus-683	108	9	as	as	ADP
finefocus-683	108	10	asfv	asfv	NOUN
finefocus-683	108	11	strains	strain	NOUN
finefocus-683	108	12	,	,	PUNCT
finefocus-683	108	13	there	there	PRON
finefocus-683	108	14	is	be	VERB
finefocus-683	108	15	significant	significant	ADJ
finefocus-683	108	16	divergence	divergence	NOUN
finefocus-683	108	17	between	between	ADP
finefocus-683	108	18	them	they	PRON
finefocus-683	108	19	.	.	PUNCT
finefocus-683	109	1	a	a	DET
finefocus-683	109	2	comparison	comparison	NOUN
finefocus-683	109	3	of	of	ADP
finefocus-683	109	4	the	the	DET
finefocus-683	109	5	asfv	asfv	NOUN
finefocus-683	109	6	b602l	b602l	PROPN
finefocus-683	109	7	,	,	PUNCT
finefocus-683	109	8	p32	p32	NOUN
finefocus-683	109	9	,	,	PUNCT
finefocus-683	109	10	p54	p54	NOUN
finefocus-683	109	11	,	,	PUNCT
finefocus-683	109	12	and	and	CCONJ
finefocus-683	109	13	p72	p72	NOUN
finefocus-683	109	14	genes	gene	NOUN
finefocus-683	109	15	(	(	PUNCT
finefocus-683	109	16	as	as	SCONJ
finefocus-683	109	17	concatenated	concatenate	VERB
finefocus-683	109	18	amino	amino	NOUN
finefocus-683	109	19	acid	acid	NOUN
finefocus-683	109	20	sequences	sequence	NOUN
finefocus-683	109	21	)	)	PUNCT
finefocus-683	109	22	of	of	ADP
finefocus-683	109	23	the	the	DET
finefocus-683	109	24	16	16	NUM
finefocus-683	109	25	asfvs	asfvs	NOUN
finefocus-683	109	26	revealed	reveal	VERB
finefocus-683	109	27	that	that	SCONJ
finefocus-683	109	28	there	there	PRON
finefocus-683	109	29	are	be	VERB
finefocus-683	109	30	several	several	ADJ
finefocus-683	109	31	viruses	virus	NOUN
finefocus-683	109	32	that	that	PRON
finefocus-683	109	33	have	have	AUX
finefocus-683	109	34	diverged	diverge	VERB
finefocus-683	109	35	to	to	PART
finefocus-683	109	36	be	be	AUX
finefocus-683	109	37	94	94	NUM
finefocus-683	109	38	95	95	NUM
finefocus-683	109	39	%	%	NOUN
finefocus-683	109	40	identical	identical	ADJ
finefocus-683	109	41	(	(	PUNCT
finefocus-683	109	42	aa	aa	NOUN
finefocus-683	109	43	)	)	PUNCT
finefocus-683	109	44	.	.	PUNCT
finefocus-683	110	1	in	in	ADP
finefocus-683	110	2	contrast	contrast	NOUN
finefocus-683	110	3	,	,	PUNCT
finefocus-683	110	4	we	we	PRON
finefocus-683	110	5	found	find	VERB
finefocus-683	110	6	that	that	SCONJ
finefocus-683	110	7	poxviruses	poxvirus	NOUN
finefocus-683	110	8	,	,	PUNCT
finefocus-683	110	9	which	which	PRON
finefocus-683	110	10	belong	belong	VERB
finefocus-683	110	11	to	to	ADP
finefocus-683	110	12	a	a	DET
finefocus-683	110	13	different	different	ADJ
finefocus-683	110	14	family	family	NOUN
finefocus-683	110	15	of	of	ADP
finefocus-683	110	16	large	large	ADJ
finefocus-683	110	17	dna	dna	PROPN
finefocus-683	110	18	viruses	virus	NOUN
finefocus-683	110	19	,	,	PUNCT
finefocus-683	110	20	that	that	PRON
finefocus-683	110	21	are	be	AUX
finefocus-683	110	22	classified	classify	VERB
finefocus-683	110	23	as	as	ADP
finefocus-683	110	24	separate	separate	ADJ
finefocus-683	110	25	species	specie	NOUN
finefocus-683	110	26	within	within	ADP
finefocus-683	110	27	the	the	DET
finefocus-683	110	28	capripox	capripox	NOUN
finefocus-683	110	29	or	or	CCONJ
finefocus-683	110	30	orthopox	orthopox	ADJ
finefocus-683	110	31	genera	genera	NOUN
finefocus-683	110	32	may	may	AUX
finefocus-683	110	33	be	be	AUX
finefocus-683	110	34	97	97	NUM
finefocus-683	110	35	99	99	NUM
finefocus-683	110	36	%	%	NOUN
finefocus-683	110	37	identitical	identitical	ADJ
finefocus-683	110	38	(	(	PUNCT
finefocus-683	110	39	aa	aa	NOUN
finefocus-683	110	40	)	)	PUNCT
finefocus-683	110	41	in	in	ADP
finefocus-683	110	42	pairwise	pairwise	NOUN
finefocus-683	110	43	alignments	alignment	NOUN
finefocus-683	110	44	.	.	PUNCT
finefocus-683	111	1	thus	thus	ADV
finefocus-683	111	2	,	,	PUNCT
finefocus-683	111	3	asfvs	asfvs	VERB
finefocus-683	111	4	that	that	PRON
finefocus-683	111	5	are	be	AUX
finefocus-683	111	6	currently	currently	ADV
finefocus-683	111	7	classified	classify	VERB
finefocus-683	111	8	as	as	ADP
finefocus-683	111	9	different	different	ADJ
finefocus-683	111	10	genotypes	genotype	NOUN
finefocus-683	111	11	within	within	ADP
finefocus-683	111	12	a	a	DET
finefocus-683	111	13	single	single	ADJ
finefocus-683	111	14	species	specie	NOUN
finefocus-683	111	15	may	may	AUX
finefocus-683	111	16	well	well	ADV
finefocus-683	111	17	be	be	AUX
finefocus-683	111	18	classified	classify	VERB
finefocus-683	111	19	into	into	ADP
finefocus-683	111	20	different	different	ADJ
finefocus-683	111	21	species	specie	NOUN
finefocus-683	111	22	if	if	SCONJ
finefocus-683	111	23	taxonomic	taxonomic	ADJ
finefocus-683	111	24	standards	standard	NOUN
finefocus-683	111	25	that	that	PRON
finefocus-683	111	26	are	be	AUX
finefocus-683	111	27	used	use	VERB
finefocus-683	111	28	with	with	ADP
finefocus-683	111	29	poxviruses	poxvirus	NOUN
finefocus-683	111	30	were	be	AUX
finefocus-683	111	31	applied	apply	VERB
finefocus-683	111	32	to	to	ADP
finefocus-683	111	33	asfv	asfv	NOUN
finefocus-683	111	34	.	.	PUNCT
finefocus-683	112	1	discussion	discussion	NOUN
finefocus-683	112	2	the	the	DET
finefocus-683	112	3	genomic	genomic	ADJ
finefocus-683	112	4	regions	region	NOUN
finefocus-683	112	5	that	that	PRON
finefocus-683	112	6	encode	encode	VERB
finefocus-683	112	7	the	the	DET
finefocus-683	112	8	5	5	NUM
finefocus-683	112	9	mgfs	mgfs	NOUN
finefocus-683	112	10	of	of	ADP
finefocus-683	112	11	asfv	asfv	NOUN
finefocus-683	112	12	presented	present	VERB
finefocus-683	112	13	here	here	ADV
finefocus-683	112	14	are	be	AUX
finefocus-683	112	15	highly	highly	ADV
finefocus-683	112	16	variable	variable	ADJ
finefocus-683	112	17	and	and	CCONJ
finefocus-683	112	18	are	be	AUX
finefocus-683	112	19	hotspots	hotspot	NOUN
finefocus-683	112	20	for	for	ADP
finefocus-683	112	21	indels	indel	NOUN
finefocus-683	112	22	making	make	VERB
finefocus-683	112	23	both	both	CCONJ
finefocus-683	112	24	sequence	sequence	NOUN
finefocus-683	112	25	alignment	alignment	NOUN
finefocus-683	112	26	and	and	CCONJ
finefocus-683	112	27	accurate	accurate	ADJ
finefocus-683	112	28	annotation	annotation	NOUN
finefocus-683	112	29	difficult	difficult	ADJ
finefocus-683	112	30	.	.	PUNCT
finefocus-683	113	1	this	this	PRON
finefocus-683	113	2	has	have	AUX
finefocus-683	113	3	resulted	result	VERB
finefocus-683	113	4	in	in	ADP
finefocus-683	113	5	inconsistent	inconsistent	ADJ
finefocus-683	113	6	annotation	annotation	NOUN
finefocus-683	113	7	among	among	ADP
finefocus-683	113	8	the	the	DET
finefocus-683	113	9	16	16	NUM
finefocus-683	113	10	asfv	asfv	NOUN
finefocus-683	113	11	genomes	genome	NOUN
finefocus-683	113	12	for	for	ADP
finefocus-683	113	13	the	the	DET
finefocus-683	113	14	identification	identification	NOUN
finefocus-683	113	15	of	of	ADP
finefocus-683	113	16	paralogs	paralog	NOUN
finefocus-683	113	17	and	and	CCONJ
finefocus-683	113	18	especially	especially	ADV
finefocus-683	113	19	the	the	DET
finefocus-683	113	20	naming	naming	NOUN
finefocus-683	113	21	of	of	ADP
finefocus-683	113	22	gene	gene	NOUN
finefocus-683	113	23	fusions	fusion	NOUN
finefocus-683	113	24	.	.	PUNCT
finefocus-683	114	1	since	since	SCONJ
finefocus-683	114	2	figure	figure	NOUN
finefocus-683	114	3	6	6	NUM
finefocus-683	114	4	.	.	PUNCT
finefocus-683	114	5	display	display	NOUN
finefocus-683	114	6	of	of	ADP
finefocus-683	114	7	all	all	DET
finefocus-683	114	8	mgf	mgf	PROPN
finefocus-683	114	9	paralogs	paralog	VERB
finefocus-683	114	10	as	as	SCONJ
finefocus-683	114	11	they	they	PRON
finefocus-683	114	12	appear	appear	VERB
finefocus-683	114	13	,	,	PUNCT
finefocus-683	114	14	left	leave	VERB
finefocus-683	114	15	to	to	ADP
finefocus-683	114	16	right	right	NOUN
finefocus-683	114	17	,	,	PUNCT
finefocus-683	114	18	in	in	ADP
finefocus-683	114	19	the	the	DET
finefocus-683	114	20	16	16	NUM
finefocus-683	114	21	asfv	asfv	NOUN
finefocus-683	114	22	strains	strain	NOUN
finefocus-683	114	23	.	.	PUNCT
finefocus-683	115	1	columns	column	NOUN
finefocus-683	115	2	of	of	ADP
finefocus-683	115	3	boxes	box	NOUN
finefocus-683	115	4	represent	represent	VERB
finefocus-683	115	5	individual	individual	ADJ
finefocus-683	115	6	mgf	mgf	PROPN
finefocus-683	115	7	orthologs	ortholog	NOUN
finefocus-683	115	8	as	as	ADP
finefocus-683	115	9	in	in	ADP
finefocus-683	115	10	figure	figure	NOUN
finefocus-683	115	11	5	5	NUM
finefocus-683	115	12	.	.	PUNCT
finefocus-683	115	13	location	location	NOUN
finefocus-683	115	14	of	of	ADP
finefocus-683	115	15	the	the	DET
finefocus-683	115	16	different	different	ADJ
finefocus-683	115	17	mgf	mgf	PROPN
finefocus-683	115	18	series	series	NOUN
finefocus-683	115	19	is	be	AUX
finefocus-683	115	20	annotated	annotate	VERB
finefocus-683	115	21	above	above	ADP
finefocus-683	115	22	the	the	DET
finefocus-683	115	23	diagram	diagram	NOUN
finefocus-683	115	24	.	.	PUNCT
finefocus-683	116	1	the	the	DET
finefocus-683	116	2	arrangement	arrangement	NOUN
finefocus-683	116	3	of	of	ADP
finefocus-683	116	4	mgf	mgf	PROPN
finefocus-683	116	5	orthologs	ortholog	NOUN
finefocus-683	116	6	separates	separate	VERB
finefocus-683	116	7	the	the	DET
finefocus-683	116	8	genomes	genome	NOUN
finefocus-683	116	9	(	(	PUNCT
finefocus-683	116	10	coloured	coloured	ADJ
finefocus-683	116	11	rows	row	NOUN
finefocus-683	116	12	)	)	PUNCT
finefocus-683	116	13	into	into	ADP
finefocus-683	116	14	4	4	NUM
finefocus-683	116	15	groups	group	NOUN
finefocus-683	116	16	that	that	PRON
finefocus-683	116	17	correlate	correlate	VERB
finefocus-683	116	18	well	well	ADV
finefocus-683	116	19	with	with	ADP
finefocus-683	116	20	the	the	DET
finefocus-683	116	21	phylogenetic	phylogenetic	ADJ
finefocus-683	116	22	tree	tree	NOUN
finefocus-683	116	23	.	.	PUNCT
finefocus-683	117	1	it	it	PRON
finefocus-683	117	2	is	be	AUX
finefocus-683	117	3	notable	notable	ADJ
finefocus-683	117	4	that	that	SCONJ
finefocus-683	117	5	the	the	DET
finefocus-683	117	6	mgf	mgf	PROPN
finefocus-683	117	7	compilation	compilation	NOUN
finefocus-683	117	8	can	can	AUX
finefocus-683	117	9	be	be	AUX
finefocus-683	117	10	split	split	VERB
finefocus-683	117	11	into	into	ADP
finefocus-683	117	12	2	2	NUM
finefocus-683	117	13	regions	region	NOUN
finefocus-683	117	14	,	,	PUNCT
finefocus-683	117	15	between	between	ADP
finefocus-683	117	16	mgf	mgf	PROPN
finefocus-683	117	17	300	300	NUM
finefocus-683	117	18	-	-	SYM
finefocus-683	117	19	1l	1l	NUM
finefocus-683	117	20	and	and	CCONJ
finefocus-683	117	21	mgf	mgf	PROPN
finefocus-683	117	22	300	300	NUM
finefocus-683	117	23	-	-	SYM
finefocus-683	117	24	2r	2r	NUM
finefocus-683	117	25	,	,	PUNCT
finefocus-683	117	26	reflecting	reflect	VERB
finefocus-683	117	27	significantly	significantly	ADV
finefocus-683	117	28	more	more	ADJ
finefocus-683	117	29	variation	variation	NOUN
finefocus-683	117	30	in	in	ADP
finefocus-683	117	31	region1	region1	NOUN
finefocus-683	117	32	than	than	SCONJ
finefocus-683	117	33	2	2	NUM
finefocus-683	117	34	.	.	NOUN
finefocus-683	117	35	nucleotide	nucleotide	NOUN
finefocus-683	117	36	positions	position	NOUN
finefocus-683	117	37	are	be	AUX
finefocus-683	117	38	given	give	VERB
finefocus-683	117	39	at	at	ADP
finefocus-683	117	40	the	the	DET
finefocus-683	117	41	bottom	bottom	NOUN
finefocus-683	117	42	of	of	ADP
finefocus-683	117	43	the	the	DET
finefocus-683	117	44	figure	figure	NOUN
finefocus-683	117	45	.	.	PUNCT
finefocus-683	118	1	figure	figure	VERB
finefocus-683	118	2	7	7	NUM
finefocus-683	118	3	.	.	PUNCT
finefocus-683	118	4	phylogenetic	phylogenetic	ADJ
finefocus-683	118	5	tree	tree	NOUN
finefocus-683	118	6	for	for	ADP
finefocus-683	118	7	the	the	DET
finefocus-683	118	8	16	16	NUM
finefocus-683	118	9	asfv	asfv	NOUN
finefocus-683	118	10	strains	strain	NOUN
finefocus-683	118	11	.	.	PUNCT
finefocus-683	119	1	genotypes	genotype	NOUN
finefocus-683	119	2	are	be	AUX
finefocus-683	119	3	shown	show	VERB
finefocus-683	119	4	in	in	ADP
finefocus-683	119	5	parentheses	parenthesis	NOUN
finefocus-683	119	6	.	.	PUNCT
finefocus-683	120	1	boxes	box	NOUN
finefocus-683	120	2	indicate	indicate	VERB
finefocus-683	120	3	groupings	grouping	NOUN
finefocus-683	120	4	defined	define	VERB
finefocus-683	120	5	in	in	ADP
finefocus-683	120	6	figure	figure	NOUN
finefocus-683	120	7	6	6	NUM
finefocus-683	120	8	.	.	PUNCT
finefocus-683	121	1	mafft	mafft	PROPN
finefocus-683	121	2	was	be	AUX
finefocus-683	121	3	used	use	VERB
finefocus-683	121	4	to	to	PART
finefocus-683	121	5	align	align	VERB
finefocus-683	121	6	the	the	DET
finefocus-683	121	7	concatenated	concatenate	VERB
finefocus-683	121	8	amino	amino	NOUN
finefocus-683	121	9	acid	acid	NOUN
finefocus-683	121	10	sequences	sequence	NOUN
finefocus-683	121	11	of	of	ADP
finefocus-683	121	12	phosphoprotein	phosphoprotein	ADJ
finefocus-683	121	13	p32	p32	NOUN
finefocus-683	121	14	,	,	PUNCT
finefocus-683	121	15	structural	structural	ADJ
finefocus-683	121	16	proteins	protein	NOUN
finefocus-683	121	17	p72	p72	NOUN
finefocus-683	121	18	and	and	CCONJ
finefocus-683	121	19	p54	p54	NOUN
finefocus-683	121	20	,	,	PUNCT
finefocus-683	121	21	and	and	CCONJ
finefocus-683	121	22	the	the	DET
finefocus-683	121	23	chaperone	chaperone	NOUN
finefocus-683	121	24	protein	protein	NOUN
finefocus-683	121	25	b602l	b602l	PROPN
finefocus-683	121	26	.	.	PUNCT
finefocus-683	122	1	the	the	DET
finefocus-683	122	2	tree	tree	NOUN
finefocus-683	122	3	was	be	AUX
finefocus-683	122	4	created	create	VERB
finefocus-683	122	5	with	with	ADP
finefocus-683	122	6	raxml	raxml	NOUN
finefocus-683	122	7	under	under	ADP
finefocus-683	122	8	a	a	DET
finefocus-683	122	9	gtrgamma	gtrgamma	NOUN
finefocus-683	122	10	base	base	NOUN
finefocus-683	122	11	substitution	substitution	NOUN
finefocus-683	122	12	model	model	NOUN
finefocus-683	122	13	using	use	VERB
finefocus-683	122	14	1000	1000	NUM
finefocus-683	122	15	bootstrap	bootstrap	NOUN
finefocus-683	122	16	replicates	replicate	NOUN
finefocus-683	122	17	and	and	CCONJ
finefocus-683	122	18	visualized	visualize	VERB
finefocus-683	122	19	using	use	VERB
finefocus-683	122	20	mega7	mega7	NOUN
finefocus-683	122	21	.	.	PUNCT
finefocus-683	123	1	this	this	DET
finefocus-683	123	2	phylogenetic	phylogenetic	ADJ
finefocus-683	123	3	tree	tree	NOUN
finefocus-683	123	4	places	place	NOUN
finefocus-683	123	5	asfv	asfv	ADV
finefocus-683	123	6	strains	strain	VERB
finefocus-683	123	7	into	into	ADP
finefocus-683	123	8	clades	clade	NOUN
finefocus-683	123	9	that	that	PRON
finefocus-683	123	10	replicate	replicate	VERB
finefocus-683	123	11	the	the	DET
finefocus-683	123	12	groupings	grouping	NOUN
finefocus-683	123	13	generated	generate	VERB
finefocus-683	123	14	by	by	ADP
finefocus-683	123	15	overall	overall	ADJ
finefocus-683	123	16	mgf	mgf	PROPN
finefocus-683	123	17	gene	gene	NOUN
finefocus-683	123	18	characteristics	characteristic	NOUN
finefocus-683	123	19	.	.	PUNCT
finefocus-683	124	1	african	african	ADJ
finefocus-683	124	2	swine	swine	ADJ
finefocus-683	124	3	fever	fever	NOUN
finefocus-683	124	4	virus	virus	NOUN
finefocus-683	124	5	•	•	ADV
finefocus-683	124	6	163162	163162	NUM
finefocus-683	124	7	•	•	NOUN
finefocus-683	124	8	fine	fine	ADJ
finefocus-683	124	9	focus	focus	NOUN
finefocus-683	124	10	,	,	PUNCT
finefocus-683	124	11	vol	vol	NOUN
finefocus-683	124	12	.	.	NOUN
finefocus-683	124	13	3	3	NUM
finefocus-683	124	14	(	(	PUNCT
finefocus-683	124	15	2	2	NUM
finefocus-683	124	16	)	)	PUNCT
finefocus-683	124	17	a	a	DET
finefocus-683	124	18	large	large	ADJ
finefocus-683	124	19	number	number	NOUN
finefocus-683	124	20	of	of	ADP
finefocus-683	124	21	asfv	asfv	NOUN
finefocus-683	124	22	genomes	genome	NOUN
finefocus-683	124	23	will	will	AUX
finefocus-683	124	24	be	be	AUX
finefocus-683	124	25	sequenced	sequence	VERB
finefocus-683	124	26	in	in	ADP
finefocus-683	124	27	the	the	DET
finefocus-683	124	28	near	near	ADJ
finefocus-683	124	29	future	future	NOUN
finefocus-683	124	30	,	,	PUNCT
finefocus-683	124	31	we	we	PRON
finefocus-683	124	32	decided	decide	VERB
finefocus-683	124	33	that	that	SCONJ
finefocus-683	124	34	standardizing	standardize	VERB
finefocus-683	124	35	the	the	DET
finefocus-683	124	36	annotation	annotation	NOUN
finefocus-683	124	37	and	and	CCONJ
finefocus-683	124	38	presentation	presentation	NOUN
finefocus-683	124	39	of	of	ADP
finefocus-683	124	40	the	the	DET
finefocus-683	124	41	asfv	asfv	NOUN
finefocus-683	124	42	mgfs	mgfs	NOUN
finefocus-683	124	43	would	would	AUX
finefocus-683	124	44	greatly	greatly	ADV
finefocus-683	124	45	simplify	simplify	VERB
finefocus-683	124	46	genome	genome	NOUN
finefocus-683	124	47	annotation	annotation	NOUN
finefocus-683	124	48	in	in	ADP
finefocus-683	124	49	the	the	DET
finefocus-683	124	50	future	future	NOUN
finefocus-683	124	51	.	.	PUNCT
finefocus-683	125	1	with	with	ADP
finefocus-683	125	2	a	a	DET
finefocus-683	125	3	better	well	ADJ
finefocus-683	125	4	reference	reference	NOUN
finefocus-683	125	5	system	system	NOUN
finefocus-683	125	6	for	for	SCONJ
finefocus-683	125	7	the	the	DET
finefocus-683	125	8	asfv	asfv	NOUN
finefocus-683	125	9	mgfs	mgfs	NOUN
finefocus-683	125	10	available	available	ADJ
finefocus-683	125	11	,	,	PUNCT
finefocus-683	125	12	we	we	PRON
finefocus-683	125	13	envision	envision	VERB
finefocus-683	125	14	a	a	DET
finefocus-683	125	15	3	3	NUM
finefocus-683	125	16	-	-	PUNCT
finefocus-683	125	17	part	part	NOUN
finefocus-683	125	18	process	process	NOUN
finefocus-683	125	19	in	in	ADP
finefocus-683	125	20	the	the	DET
finefocus-683	125	21	annotation	annotation	NOUN
finefocus-683	125	22	process	process	NOUN
finefocus-683	125	23	for	for	ADP
finefocus-683	125	24	asfv	asfv	NOUN
finefocus-683	125	25	genomes	genome	NOUN
finefocus-683	125	26	sequenced	sequence	VERB
finefocus-683	125	27	in	in	ADP
finefocus-683	125	28	the	the	DET
finefocus-683	125	29	future	future	NOUN
finefocus-683	125	30	.	.	PUNCT
finefocus-683	126	1	first	first	ADV
finefocus-683	126	2	,	,	PUNCT
finefocus-683	126	3	there	there	PRON
finefocus-683	126	4	would	would	AUX
finefocus-683	126	5	be	be	AUX
finefocus-683	126	6	a	a	DET
finefocus-683	126	7	basic	basic	ADJ
finefocus-683	126	8	sequence	sequence	NOUN
finefocus-683	126	9	similarity	similarity	NOUN
finefocus-683	126	10	search	search	NOUN
finefocus-683	126	11	with	with	ADP
finefocus-683	126	12	a	a	DET
finefocus-683	126	13	set	set	NOUN
finefocus-683	126	14	of	of	ADP
finefocus-683	126	15	10	10	NUM
finefocus-683	126	16	conserved	conserved	ADJ
finefocus-683	126	17	genes	gene	NOUN
finefocus-683	126	18	to	to	PART
finefocus-683	126	19	identify	identify	VERB
finefocus-683	126	20	the	the	DET
finefocus-683	126	21	most	most	ADV
finefocus-683	126	22	similar	similar	ADJ
finefocus-683	126	23	reference	reference	NOUN
finefocus-683	126	24	genome	genome	NOUN
finefocus-683	126	25	to	to	PART
finefocus-683	126	26	be	be	AUX
finefocus-683	126	27	used	use	VERB
finefocus-683	126	28	with	with	ADP
finefocus-683	126	29	the	the	DET
finefocus-683	126	30	genome	genome	NOUN
finefocus-683	126	31	annotation	annotation	NOUN
finefocus-683	126	32	transfer	transfer	NOUN
finefocus-683	126	33	utility	utility	NOUN
finefocus-683	126	34	tool	tool	NOUN
finefocus-683	126	35	(	(	PUNCT
finefocus-683	126	36	gatu	gatu	VERB
finefocus-683	126	37	;	;	PUNCT
finefocus-683	126	38	(	(	PUNCT
finefocus-683	126	39	17	17	NUM
finefocus-683	126	40	)	)	PUNCT
finefocus-683	126	41	)	)	PUNCT
finefocus-683	126	42	.	.	PUNCT
finefocus-683	127	1	second	second	ADJ
finefocus-683	127	2	,	,	PUNCT
finefocus-683	127	3	a	a	DET
finefocus-683	127	4	dotplot	dotplot	NOUN
finefocus-683	127	5	would	would	AUX
finefocus-683	127	6	be	be	AUX
finefocus-683	127	7	used	use	VERB
finefocus-683	127	8	to	to	PART
finefocus-683	127	9	confirm	confirm	VERB
finefocus-683	127	10	co	co	NOUN
finefocus-683	127	11	-	-	NOUN
finefocus-683	127	12	linearity	linearity	NOUN
finefocus-683	127	13	between	between	ADP
finefocus-683	127	14	the	the	DET
finefocus-683	127	15	proposed	propose	VERB
finefocus-683	127	16	reference	reference	NOUN
finefocus-683	127	17	genome	genome	NOUN
finefocus-683	127	18	and	and	CCONJ
finefocus-683	127	19	the	the	DET
finefocus-683	127	20	newly	newly	ADV
finefocus-683	127	21	sequenced	sequence	VERB
finefocus-683	127	22	target	target	NOUN
finefocus-683	127	23	genome	genome	NOUN
finefocus-683	127	24	.	.	PUNCT
finefocus-683	128	1	third	third	ADJ
finefocus-683	128	2	,	,	PUNCT
finefocus-683	128	3	gatu	gatu	NOUN
finefocus-683	128	4	would	would	AUX
finefocus-683	128	5	be	be	AUX
finefocus-683	128	6	used	use	VERB
finefocus-683	128	7	to	to	PART
finefocus-683	128	8	transfer	transfer	VERB
finefocus-683	128	9	as	as	ADV
finefocus-683	128	10	many	many	ADJ
finefocus-683	128	11	annotations	annotation	NOUN
finefocus-683	128	12	as	as	ADP
finefocus-683	128	13	possible	possible	ADJ
finefocus-683	128	14	(	(	PUNCT
finefocus-683	128	15	>	>	X
finefocus-683	128	16	95	95	NUM
finefocus-683	128	17	%	%	NOUN
finefocus-683	128	18	)	)	PUNCT
finefocus-683	128	19	from	from	ADP
finefocus-683	128	20	the	the	DET
finefocus-683	128	21	reference	reference	NOUN
finefocus-683	128	22	genome	genome	NOUN
finefocus-683	128	23	to	to	ADP
finefocus-683	128	24	the	the	DET
finefocus-683	128	25	target	target	NOUN
finefocus-683	128	26	,	,	PUNCT
finefocus-683	128	27	with	with	ADP
finefocus-683	128	28	the	the	DET
finefocus-683	128	29	use	use	NOUN
finefocus-683	128	30	of	of	ADP
finefocus-683	128	31	a	a	DET
finefocus-683	128	32	full	full	ADJ
finefocus-683	128	33	genome	genome	NOUN
finefocus-683	128	34	alignment	alignment	NOUN
finefocus-683	128	35	of	of	ADP
finefocus-683	128	36	the	the	DET
finefocus-683	128	37	reference	reference	NOUN
finefocus-683	128	38	and	and	CCONJ
finefocus-683	128	39	target	target	NOUN
finefocus-683	128	40	in	in	ADP
finefocus-683	128	41	bbb	bbb	PROPN
finefocus-683	128	42	to	to	PART
finefocus-683	128	43	confirm	confirm	VERB
finefocus-683	128	44	the	the	DET
finefocus-683	128	45	positions	position	NOUN
finefocus-683	128	46	and	and	CCONJ
finefocus-683	128	47	numbering	numbering	NOUN
finefocus-683	128	48	of	of	ADP
finefocus-683	128	49	the	the	DET
finefocus-683	128	50	members	member	NOUN
finefocus-683	128	51	of	of	ADP
finefocus-683	128	52	the	the	DET
finefocus-683	128	53	mgfs	mgfs	NOUN
finefocus-683	128	54	.	.	PUNCT
finefocus-683	129	1	as	as	ADP
finefocus-683	129	2	the	the	DET
finefocus-683	129	3	number	number	NOUN
finefocus-683	129	4	of	of	ADP
finefocus-683	129	5	sequenced	sequence	VERB
finefocus-683	129	6	and	and	CCONJ
finefocus-683	129	7	annotated	annotate	VERB
finefocus-683	129	8	genomes	genome	NOUN
finefocus-683	129	9	increases	increase	NOUN
finefocus-683	129	10	,	,	PUNCT
finefocus-683	129	11	fewer	few	ADJ
finefocus-683	129	12	differences	difference	NOUN
finefocus-683	129	13	will	will	AUX
finefocus-683	129	14	be	be	AUX
finefocus-683	129	15	found	find	VERB
finefocus-683	129	16	between	between	ADP
finefocus-683	129	17	the	the	DET
finefocus-683	129	18	new	new	ADJ
finefocus-683	129	19	target	target	NOUN
finefocus-683	129	20	genomes	genome	NOUN
finefocus-683	129	21	and	and	CCONJ
finefocus-683	129	22	their	their	PRON
finefocus-683	129	23	references	reference	NOUN
finefocus-683	129	24	.	.	PUNCT
finefocus-683	130	1	thus	thus	ADV
finefocus-683	130	2	,	,	PUNCT
finefocus-683	130	3	gatu	gatu	NOUN
finefocus-683	130	4	will	will	AUX
finefocus-683	130	5	become	become	VERB
finefocus-683	130	6	more	more	ADV
finefocus-683	130	7	efficient	efficient	ADJ
finefocus-683	130	8	and	and	CCONJ
finefocus-683	130	9	less	less	ADV
finefocus-683	130	10	annotator	annotator	NOUN
finefocus-683	130	11	intervention	intervention	NOUN
finefocus-683	130	12	will	will	AUX
finefocus-683	130	13	be	be	AUX
finefocus-683	130	14	required	require	VERB
finefocus-683	130	15	to	to	PART
finefocus-683	130	16	annotate	annotate	VERB
finefocus-683	130	17	those	those	DET
finefocus-683	130	18	few	few	ADJ
finefocus-683	130	19	orfs	orf	NOUN
finefocus-683	130	20	that	that	PRON
finefocus-683	130	21	gatu	gatu	NOUN
finefocus-683	130	22	leaves	leave	NOUN
finefocus-683	130	23	unfinished	unfinished	ADJ
finefocus-683	130	24	.	.	PUNCT
finefocus-683	131	1	in	in	ADP
finefocus-683	131	2	conclusion	conclusion	NOUN
finefocus-683	131	3	,	,	PUNCT
finefocus-683	131	4	we	we	PRON
finefocus-683	131	5	believe	believe	VERB
finefocus-683	131	6	that	that	SCONJ
finefocus-683	131	7	our	our	PRON
finefocus-683	131	8	figures	figure	NOUN
finefocus-683	131	9	are	be	AUX
finefocus-683	131	10	an	an	DET
finefocus-683	131	11	intuitive	intuitive	ADJ
finefocus-683	131	12	visualization	visualization	NOUN
finefocus-683	131	13	of	of	ADP
finefocus-683	131	14	the	the	DET
finefocus-683	131	15	arrangement	arrangement	NOUN
finefocus-683	131	16	of	of	ADP
finefocus-683	131	17	genes	gene	NOUN
finefocus-683	131	18	within	within	ADP
finefocus-683	131	19	the	the	DET
finefocus-683	131	20	mgfs	mgfs	NOUN
finefocus-683	131	21	,	,	PUNCT
finefocus-683	131	22	especially	especially	ADV
finefocus-683	131	23	when	when	SCONJ
finefocus-683	131	24	there	there	PRON
finefocus-683	131	25	is	be	VERB
finefocus-683	131	26	a	a	DET
finefocus-683	131	27	need	need	NOUN
finefocus-683	131	28	to	to	PART
finefocus-683	131	29	compare	compare	VERB
finefocus-683	131	30	the	the	DET
finefocus-683	131	31	mgfs	mgfs	NOUN
finefocus-683	131	32	of	of	ADP
finefocus-683	131	33	different	different	ADJ
finefocus-683	131	34	viruses	virus	NOUN
finefocus-683	131	35	.	.	PUNCT
finefocus-683	132	1	it	it	PRON
finefocus-683	132	2	is	be	AUX
finefocus-683	132	3	envisioned	envision	VERB
finefocus-683	132	4	that	that	SCONJ
finefocus-683	132	5	the	the	DET
finefocus-683	132	6	maps	map	NOUN
finefocus-683	132	7	of	of	ADP
finefocus-683	132	8	the	the	DET
finefocus-683	132	9	asfv	asfv	NOUN
finefocus-683	132	10	mgfs	mgfs	NOUN
finefocus-683	132	11	will	will	AUX
finefocus-683	132	12	be	be	AUX
finefocus-683	132	13	living	live	VERB
finefocus-683	132	14	documents	document	NOUN
finefocus-683	132	15	,	,	PUNCT
finefocus-683	132	16	updated	update	VERB
finefocus-683	132	17	,	,	PUNCT
finefocus-683	132	18	by	by	ADP
finefocus-683	132	19	a	a	DET
finefocus-683	132	20	volunteer	volunteer	NOUN
finefocus-683	132	21	curator	curator	NOUN
finefocus-683	132	22	from	from	ADP
finefocus-683	132	23	the	the	DET
finefocus-683	132	24	research	research	NOUN
finefocus-683	132	25	community	community	NOUN
finefocus-683	132	26	,	,	PUNCT
finefocus-683	132	27	with	with	ADP
finefocus-683	132	28	any	any	DET
finefocus-683	132	29	new	new	ADJ
finefocus-683	132	30	paralogs	paralog	NOUN
finefocus-683	132	31	that	that	PRON
finefocus-683	132	32	may	may	AUX
finefocus-683	132	33	be	be	AUX
finefocus-683	132	34	discovered	discover	VERB
finefocus-683	132	35	in	in	ADP
finefocus-683	132	36	newly	newly	ADV
finefocus-683	132	37	sequenced	sequence	VERB
finefocus-683	132	38	genomes	genome	NOUN
finefocus-683	132	39	.	.	PUNCT
finefocus-683	133	1	this	this	PRON
finefocus-683	133	2	is	be	AUX
finefocus-683	133	3	likely	likely	ADJ
finefocus-683	133	4	to	to	PART
finefocus-683	133	5	be	be	AUX
finefocus-683	133	6	required	require	VERB
finefocus-683	133	7	since	since	SCONJ
finefocus-683	133	8	genomes	genome	NOUN
finefocus-683	133	9	have	have	VERB
finefocus-683	133	10	yet	yet	ADV
finefocus-683	133	11	to	to	PART
finefocus-683	133	12	be	be	AUX
finefocus-683	133	13	sequenced	sequence	VERB
finefocus-683	133	14	from	from	ADP
finefocus-683	133	15	a	a	DET
finefocus-683	133	16	large	large	ADJ
finefocus-683	133	17	proportion	proportion	NOUN
finefocus-683	133	18	of	of	ADP
finefocus-683	133	19	the	the	DET
finefocus-683	133	20	asfv	asfv	NOUN
finefocus-683	133	21	genotypes	genotype	NOUN
finefocus-683	133	22	and	and	CCONJ
finefocus-683	133	23	the	the	DET
finefocus-683	133	24	mgfs	mgfs	NOUN
finefocus-683	133	25	are	be	AUX
finefocus-683	133	26	the	the	DET
finefocus-683	133	27	most	most	ADV
finefocus-683	133	28	variable	variable	ADJ
finefocus-683	133	29	parts	part	NOUN
finefocus-683	133	30	of	of	ADP
finefocus-683	133	31	the	the	DET
finefocus-683	133	32	genomes	genome	NOUN
finefocus-683	133	33	.	.	PUNCT
finefocus-683	134	1	to	to	ADP
finefocus-683	134	2	this	this	DET
finefocus-683	134	3	end	end	NOUN
finefocus-683	134	4	,	,	PUNCT
finefocus-683	134	5	the	the	DET
finefocus-683	134	6	diagrams	diagram	NOUN
finefocus-683	134	7	can	can	AUX
finefocus-683	134	8	be	be	AUX
finefocus-683	134	9	easily	easily	ADV
finefocus-683	134	10	updated	update	VERB
finefocus-683	134	11	when	when	SCONJ
finefocus-683	134	12	new	new	ADJ
finefocus-683	134	13	mgf	mgf	PROPN
finefocus-683	134	14	paralogs	paralog	VERB
finefocus-683	134	15	are	be	AUX
finefocus-683	134	16	discovered	discover	VERB
finefocus-683	134	17	by	by	ADP
finefocus-683	134	18	the	the	DET
finefocus-683	134	19	addition	addition	NOUN
finefocus-683	134	20	of	of	ADP
finefocus-683	134	21	new	new	ADJ
finefocus-683	134	22	columns	column	NOUN
finefocus-683	134	23	.	.	PUNCT
finefocus-683	135	1	although	although	SCONJ
finefocus-683	135	2	new	new	ADJ
finefocus-683	135	3	asfv	asfv	NOUN
finefocus-683	135	4	genomes	genome	NOUN
finefocus-683	135	5	can	can	AUX
finefocus-683	135	6	be	be	AUX
finefocus-683	135	7	added	add	VERB
finefocus-683	135	8	to	to	ADP
finefocus-683	135	9	the	the	DET
finefocus-683	135	10	diagrams	diagram	NOUN
finefocus-683	135	11	by	by	ADP
finefocus-683	135	12	simply	simply	ADV
finefocus-683	135	13	copying	copy	VERB
finefocus-683	135	14	the	the	DET
finefocus-683	135	15	most	most	ADV
finefocus-683	135	16	similar	similar	ADJ
finefocus-683	135	17	existing	exist	VERB
finefocus-683	135	18	row	row	NOUN
finefocus-683	135	19	and	and	CCONJ
finefocus-683	135	20	editing	edit	VERB
finefocus-683	135	21	the	the	DET
finefocus-683	135	22	sizes	size	NOUN
finefocus-683	135	23	of	of	ADP
finefocus-683	135	24	the	the	DET
finefocus-683	135	25	gene	gene	NOUN
finefocus-683	135	26	boxes	box	NOUN
finefocus-683	135	27	and	and	CCONJ
finefocus-683	135	28	labels	label	NOUN
finefocus-683	135	29	,	,	PUNCT
finefocus-683	135	30	as	as	ADP
finefocus-683	135	31	the	the	DET
finefocus-683	135	32	number	number	NOUN
finefocus-683	135	33	of	of	ADP
finefocus-683	135	34	genomes	genome	NOUN
finefocus-683	135	35	grows	grow	NOUN
finefocus-683	135	36	,	,	PUNCT
finefocus-683	135	37	space	space	NOUN
finefocus-683	135	38	could	could	AUX
finefocus-683	135	39	be	be	AUX
finefocus-683	135	40	saved	save	VERB
finefocus-683	135	41	by	by	ADP
finefocus-683	135	42	showing	show	VERB
finefocus-683	135	43	a	a	DET
finefocus-683	135	44	single	single	ADJ
finefocus-683	135	45	representative	representative	NOUN
finefocus-683	135	46	if	if	SCONJ
finefocus-683	135	47	multiple	multiple	ADJ
finefocus-683	135	48	viruses	virus	NOUN
finefocus-683	135	49	have	have	VERB
finefocus-683	135	50	identical	identical	ADJ
finefocus-683	135	51	mgfs	mgfs	NOUN
finefocus-683	135	52	.	.	PUNCT
finefocus-683	136	1	these	these	DET
finefocus-683	136	2	mgf	mgf	PROPN
finefocus-683	136	3	maps	map	NOUN
finefocus-683	136	4	will	will	AUX
finefocus-683	136	5	speed	speed	VERB
finefocus-683	136	6	up	up	ADP
finefocus-683	136	7	the	the	DET
finefocus-683	136	8	annotation	annotation	NOUN
finefocus-683	136	9	process	process	NOUN
finefocus-683	136	10	and	and	CCONJ
finefocus-683	136	11	simplify	simplify	VERB
finefocus-683	136	12	the	the	DET
finefocus-683	136	13	comparison	comparison	NOUN
finefocus-683	136	14	of	of	ADP
finefocus-683	136	15	new	new	ADJ
finefocus-683	136	16	asfv	asfv	NOUN
finefocus-683	136	17	genomes	genome	NOUN
finefocus-683	136	18	.	.	PUNCT
finefocus-683	137	1	with	with	ADP
finefocus-683	137	2	more	more	ADV
finefocus-683	137	3	accurate	accurate	ADJ
finefocus-683	137	4	genome	genome	NOUN
finefocus-683	137	5	alignments	alignment	NOUN
finefocus-683	137	6	,	,	PUNCT
finefocus-683	137	7	researchers	researcher	NOUN
finefocus-683	137	8	will	will	AUX
finefocus-683	137	9	also	also	ADV
finefocus-683	137	10	be	be	AUX
finefocus-683	137	11	better	well	ADV
finefocus-683	137	12	able	able	ADJ
finefocus-683	137	13	to	to	PART
finefocus-683	137	14	correlate	correlate	VERB
finefocus-683	137	15	genomic	genomic	ADJ
finefocus-683	137	16	features	feature	NOUN
finefocus-683	137	17	with	with	ADP
finefocus-683	137	18	virulence	virulence	NOUN
finefocus-683	137	19	levels	level	NOUN
finefocus-683	137	20	of	of	ADP
finefocus-683	137	21	the	the	DET
finefocus-683	137	22	various	various	ADJ
finefocus-683	137	23	asfv	asfv	NOUN
finefocus-683	137	24	isolates	isolate	NOUN
finefocus-683	137	25	.	.	PUNCT
finefocus-683	138	1	african	african	ADJ
finefocus-683	138	2	swine	swine	ADJ
finefocus-683	138	3	fever	fever	NOUN
finefocus-683	138	4	virus	virus	NOUN
finefocus-683	138	5	•	•	NOUN
finefocus-683	138	6	165	165	NUM
finefocus-683	138	7	supplemental	supplemental	ADJ
finefocus-683	138	8	figures	figure	NOUN
finefocus-683	138	9	supp	supp	PROPN
finefocus-683	138	10	.	.	PUNCT
finefocus-683	139	1	figure	figure	VERB
finefocus-683	139	2	1	1	NUM
finefocus-683	139	3	.	.	PUNCT
finefocus-683	140	1	diagram	diagram	NOUN
finefocus-683	140	2	of	of	ADP
finefocus-683	140	3	mgf	mgf	PROPN
finefocus-683	140	4	100	100	NUM
finefocus-683	140	5	organization	organization	NOUN
finefocus-683	140	6	.	.	PUNCT
finefocus-683	141	1	see	see	VERB
finefocus-683	141	2	supp	supp	PROPN
finefocus-683	141	3	.	.	PUNCT
finefocus-683	142	1	figure	figure	VERB
finefocus-683	142	2	7	7	NUM
finefocus-683	142	3	for	for	ADP
finefocus-683	142	4	additional	additional	ADJ
finefocus-683	142	5	information	information	NOUN
finefocus-683	142	6	describing	describe	VERB
finefocus-683	142	7	this	this	DET
finefocus-683	142	8	mgf	mgf	PROPN
finefocus-683	142	9	.	.	PUNCT
finefocus-683	142	10	supp	supp	PROPN
finefocus-683	142	11	.	.	PUNCT
finefocus-683	143	1	figure	figure	VERB
finefocus-683	143	2	3	3	NUM
finefocus-683	143	3	.	.	X
finefocus-683	143	4	diagram	diagram	NOUN
finefocus-683	143	5	of	of	ADP
finefocus-683	143	6	mgf	mgf	PROPN
finefocus-683	143	7	300	300	NUM
finefocus-683	143	8	organization	organization	NOUN
finefocus-683	143	9	.	.	PUNCT
finefocus-683	144	1	see	see	VERB
finefocus-683	144	2	supp	supp	PROPN
finefocus-683	144	3	.	.	PUNCT
finefocus-683	145	1	figure	figure	VERB
finefocus-683	145	2	9	9	NUM
finefocus-683	145	3	for	for	ADP
finefocus-683	145	4	additional	additional	ADJ
finefocus-683	145	5	information	information	NOUN
finefocus-683	145	6	describing	describe	VERB
finefocus-683	145	7	this	this	DET
finefocus-683	145	8	mgf	mgf	PROPN
finefocus-683	145	9	.	.	PUNCT
finefocus-683	145	10	supp	supp	PROPN
finefocus-683	145	11	.	.	PUNCT
finefocus-683	146	1	figure	figure	VERB
finefocus-683	146	2	4	4	NUM
finefocus-683	146	3	.	.	PUNCT
finefocus-683	146	4	diagram	diagram	NOUN
finefocus-683	146	5	of	of	ADP
finefocus-683	146	6	mgf	mgf	PROPN
finefocus-683	146	7	360	360	NUM
finefocus-683	146	8	organization	organization	NOUN
finefocus-683	146	9	.	.	PUNCT
finefocus-683	147	1	see	see	VERB
finefocus-683	147	2	supp	supp	PROPN
finefocus-683	147	3	.	.	PUNCT
finefocus-683	148	1	figure	figure	VERB
finefocus-683	148	2	10	10	NUM
finefocus-683	148	3	for	for	ADP
finefocus-683	148	4	additional	additional	ADJ
finefocus-683	148	5	information	information	NOUN
finefocus-683	148	6	describing	describe	VERB
finefocus-683	148	7	this	this	DET
finefocus-683	148	8	mgf	mgf	PROPN
finefocus-683	148	9	.	.	PUNCT
finefocus-683	148	10	supp	supp	PROPN
finefocus-683	148	11	.	.	PUNCT
finefocus-683	149	1	figure	figure	NOUN
finefocus-683	149	2	2	2	NUM
finefocus-683	149	3	.	.	X
finefocus-683	149	4	diagram	diagram	NOUN
finefocus-683	149	5	of	of	ADP
finefocus-683	149	6	mgf	mgf	PROPN
finefocus-683	149	7	110	110	NUM
finefocus-683	149	8	organization	organization	NOUN
finefocus-683	149	9	.	.	PUNCT
finefocus-683	150	1	see	see	VERB
finefocus-683	150	2	supp	supp	PROPN
finefocus-683	150	3	.	.	PUNCT
finefocus-683	151	1	figure	figure	VERB
finefocus-683	151	2	8	8	NUM
finefocus-683	151	3	for	for	ADP
finefocus-683	151	4	additional	additional	ADJ
finefocus-683	151	5	information	information	NOUN
finefocus-683	151	6	describing	describe	VERB
finefocus-683	151	7	this	this	DET
finefocus-683	151	8	mgf	mgf	NOUN
finefocus-683	151	9	.	.	PROPN
finefocus-683	151	10	164	164	NUM
finefocus-683	151	11	•	•	NUM
finefocus-683	151	12	fine	fine	ADJ
finefocus-683	151	13	focus	focus	NOUN
finefocus-683	151	14	,	,	PUNCT
finefocus-683	151	15	vol	vol	NOUN
finefocus-683	151	16	.	.	NOUN
finefocus-683	151	17	3	3	NUM
finefocus-683	151	18	(	(	PUNCT
finefocus-683	151	19	2	2	NUM
finefocus-683	151	20	)	)	PUNCT
finefocus-683	151	21	african	african	ADJ
finefocus-683	151	22	swine	swine	ADJ
finefocus-683	151	23	fever	fever	NOUN
finefocus-683	151	24	virus	virus	NOUN
finefocus-683	151	25	•	•	NOUN
finefocus-683	151	26	167	167	NUM
finefocus-683	151	27	supp	supp	NOUN
finefocus-683	151	28	.	.	PUNCT
finefocus-683	152	1	figure	figure	VERB
finefocus-683	152	2	5	5	NUM
finefocus-683	152	3	.	.	PUNCT
finefocus-683	153	1	diagram	diagram	NOUN
finefocus-683	153	2	of	of	ADP
finefocus-683	153	3	mgf	mgf	PROPN
finefocus-683	153	4	505	505	NUM
finefocus-683	153	5	organization	organization	NOUN
finefocus-683	153	6	.	.	PUNCT
finefocus-683	154	1	see	see	VERB
finefocus-683	154	2	supp	supp	PROPN
finefocus-683	154	3	.	.	PUNCT
finefocus-683	155	1	figure	figure	VERB
finefocus-683	155	2	11	11	NUM
finefocus-683	155	3	for	for	ADP
finefocus-683	155	4	additional	additional	ADJ
finefocus-683	155	5	information	information	NOUN
finefocus-683	155	6	describing	describe	VERB
finefocus-683	155	7	this	this	DET
finefocus-683	155	8	mgf	mgf	PROPN
finefocus-683	155	9	.	.	PUNCT
finefocus-683	155	10	supp	supp	PROPN
finefocus-683	155	11	.	.	PUNCT
finefocus-683	156	1	figure	figure	VERB
finefocus-683	156	2	6	6	NUM
finefocus-683	156	3	.	.	PUNCT
finefocus-683	156	4	diagram	diagram	NOUN
finefocus-683	156	5	of	of	ADP
finefocus-683	156	6	mgf	mgf	PROPN
finefocus-683	156	7	compilation	compilation	PROPN
finefocus-683	156	8	.	.	PUNCT
finefocus-683	157	1	see	see	VERB
finefocus-683	157	2	supp	supp	PROPN
finefocus-683	157	3	.	.	PUNCT
finefocus-683	158	1	figure	figure	VERB
finefocus-683	158	2	12	12	NUM
finefocus-683	158	3	for	for	ADP
finefocus-683	158	4	additional	additional	ADJ
finefocus-683	158	5	information	information	NOUN
finefocus-683	158	6	describing	describe	VERB
finefocus-683	158	7	this	this	DET
finefocus-683	158	8	mgf	mgf	PROPN
finefocus-683	158	9	compilation	compilation	NOUN
finefocus-683	158	10	.	.	PUNCT
finefocus-683	159	1	supp	supp	PROPN
finefocus-683	159	2	.	.	PUNCT
finefocus-683	160	1	figure	figure	VERB
finefocus-683	160	2	7	7	NUM
finefocus-683	160	3	.	.	PUNCT
finefocus-683	160	4	information	information	NOUN
finefocus-683	160	5	sheet	sheet	NOUN
finefocus-683	160	6	describing	describe	VERB
finefocus-683	160	7	mgf	mgf	PROPN
finefocus-683	160	8	100	100	NUM
finefocus-683	160	9	.	.	PUNCT
finefocus-683	161	1	supp	supp	PROPN
finefocus-683	161	2	.	.	PUNCT
finefocus-683	162	1	figure	figure	VERB
finefocus-683	162	2	8	8	NUM
finefocus-683	162	3	.	.	PUNCT
finefocus-683	163	1	information	information	NOUN
finefocus-683	163	2	sheet	sheet	NOUN
finefocus-683	163	3	describing	describe	VERB
finefocus-683	163	4	mgf	mgf	PROPN
finefocus-683	163	5	110	110	NUM
finefocus-683	163	6	supp	supp	PROPN
finefocus-683	163	7	.	.	PUNCT
finefocus-683	164	1	figure	figure	VERB
finefocus-683	164	2	9	9	NUM
finefocus-683	164	3	.	.	PUNCT
finefocus-683	164	4	information	information	NOUN
finefocus-683	164	5	sheet	sheet	NOUN
finefocus-683	164	6	describing	describe	VERB
finefocus-683	164	7	mgf	mgf	PROPN
finefocus-683	164	8	300	300	NUM
finefocus-683	164	9	.	.	NOUN
finefocus-683	165	1	166	166	NUM
finefocus-683	165	2	•	•	NUM
finefocus-683	165	3	fine	fine	ADJ
finefocus-683	165	4	focus	focus	NOUN
finefocus-683	165	5	,	,	PUNCT
finefocus-683	165	6	vol	vol	NOUN
finefocus-683	165	7	.	.	NOUN
finefocus-683	165	8	3	3	NUM
finefocus-683	165	9	(	(	PUNCT
finefocus-683	165	10	2	2	NUM
finefocus-683	165	11	)	)	PUNCT
finefocus-683	165	12	african	african	ADJ
finefocus-683	165	13	swine	swine	ADJ
finefocus-683	165	14	fever	fever	NOUN
finefocus-683	165	15	virus	virus	NOUN
finefocus-683	165	16	•	•	NOUN
finefocus-683	165	17	169	169	NUM
finefocus-683	165	18	supp	supp	NOUN
finefocus-683	165	19	.	.	PUNCT
finefocus-683	166	1	figure	figure	VERB
finefocus-683	166	2	10	10	NUM
finefocus-683	166	3	.	.	PUNCT
finefocus-683	167	1	information	information	NOUN
finefocus-683	167	2	sheet	sheet	NOUN
finefocus-683	167	3	describing	describe	VERB
finefocus-683	167	4	mgf	mgf	PROPN
finefocus-683	167	5	360	360	NUM
finefocus-683	167	6	.	.	PUNCT
finefocus-683	168	1	supp	supp	PROPN
finefocus-683	168	2	.	.	PUNCT
finefocus-683	169	1	figure	figure	VERB
finefocus-683	169	2	11	11	NUM
finefocus-683	169	3	.	.	PUNCT
finefocus-683	170	1	information	information	NOUN
finefocus-683	170	2	sheet	sheet	NOUN
finefocus-683	170	3	describing	describe	VERB
finefocus-683	170	4	mgf	mgf	PROPN
finefocus-683	170	5	505	505	NUM
finefocus-683	170	6	.	.	PUNCT
finefocus-683	171	1	supp	supp	PROPN
finefocus-683	171	2	.	.	PUNCT
finefocus-683	172	1	figure	figure	NOUN
finefocus-683	172	2	12	12	NUM
finefocus-683	172	3	.	.	PUNCT
finefocus-683	173	1	information	information	NOUN
finefocus-683	173	2	sheet	sheet	NOUN
finefocus-683	173	3	describing	describe	VERB
finefocus-683	173	4	mgf	mgf	PROPN
finefocus-683	173	5	compilation	compilation	NOUN
finefocus-683	173	6	.	.	PUNCT
finefocus-683	174	1	168	168	NUM
finefocus-683	174	2	•	•	NUM
finefocus-683	174	3	fine	fine	ADJ
finefocus-683	174	4	focus	focus	NOUN
finefocus-683	174	5	,	,	PUNCT
finefocus-683	174	6	vol	vol	NOUN
finefocus-683	174	7	.	.	NOUN
finefocus-683	174	8	3	3	NUM
finefocus-683	174	9	(	(	PUNCT
finefocus-683	174	10	2	2	NUM
finefocus-683	174	11	)	)	PUNCT
finefocus-683	174	12	1	1	NUM
finefocus-683	174	13	.	.	X
finefocus-683	174	14	achenbach	achenbach	PROPN
finefocus-683	174	15	je	je	PROPN
finefocus-683	174	16	,	,	PUNCT
finefocus-683	174	17	gallardo	gallardo	PROPN
finefocus-683	174	18	c	c	PROPN
finefocus-683	174	19	,	,	PUNCT
finefocus-683	174	20	nieto	nieto	PROPN
finefocus-683	174	21	-	-	PUNCT
finefocus-683	174	22	pelegrín	pelegrín	PROPN
finefocus-683	174	23	e	e	NOUN
finefocus-683	174	24	,	,	PUNCT
finefocus-683	174	25	et	et	PROPN
finefocus-683	174	26	al	al	PROPN
finefocus-683	174	27	.	.	PROPN
finefocus-683	174	28	2016	2016	NUM
finefocus-683	174	29	.	.	PUNCT
finefocus-683	175	1	identification	identification	NOUN
finefocus-683	175	2	of	of	ADP
finefocus-683	175	3	a	a	DET
finefocus-683	175	4	new	new	ADJ
finefocus-683	175	5	genotype	genotype	NOUN
finefocus-683	175	6	of	of	ADP
finefocus-683	175	7	african	african	ADJ
finefocus-683	175	8	swine	swine	ADJ
finefocus-683	175	9	fever	fever	NOUN
finefocus-683	175	10	virus	virus	NOUN
finefocus-683	175	11	in	in	ADP
finefocus-683	175	12	domestic	domestic	ADJ
finefocus-683	175	13	pigs	pig	NOUN
finefocus-683	175	14	from	from	ADP
finefocus-683	175	15	ethiopia	ethiopia	PROPN
finefocus-683	175	16	.	.	PUNCT
finefocus-683	176	1	transbound	transbound	PROPN
finefocus-683	176	2	emerg	emerg	PROPN
finefocus-683	176	3	dis	dis	PROPN
finefocus-683	176	4	doi:10.1111	doi:10.1111	PROPN
finefocus-683	176	5	/	/	SYM
finefocus-683	176	6	tbed.12511	tbed.12511	PROPN
finefocus-683	176	7	2	2	NUM
finefocus-683	176	8	.	.	PUNCT
finefocus-683	176	9	bellini	bellini	PROPN
finefocus-683	176	10	s	s	PROPN
finefocus-683	176	11	,	,	PUNCT
finefocus-683	176	12	rutili	rutili	PROPN
finefocus-683	176	13	d	d	PROPN
finefocus-683	176	14	,	,	PUNCT
finefocus-683	176	15	guberti	guberti	NOUN
finefocus-683	176	16	v.	v.	ADP
finefocus-683	176	17	2016	2016	NUM
finefocus-683	176	18	.	.	PUNCT
finefocus-683	177	1	preventive	preventive	ADJ
finefocus-683	177	2	measures	measure	NOUN
finefocus-683	177	3	aimed	aim	VERB
finefocus-683	177	4	at	at	ADP
finefocus-683	177	5	minimizing	minimize	VERB
finefocus-683	177	6	the	the	DET
finefocus-683	177	7	risk	risk	NOUN
finefocus-683	177	8	of	of	ADP
finefocus-683	177	9	african	african	ADJ
finefocus-683	177	10	swine	swine	ADJ
finefocus-683	177	11	fever	fever	NOUN
finefocus-683	177	12	virus	virus	NOUN
finefocus-683	177	13	spread	spread	VERB
finefocus-683	177	14	in	in	ADP
finefocus-683	177	15	pig	pig	NOUN
finefocus-683	177	16	farming	farming	NOUN
finefocus-683	177	17	systems	system	NOUN
finefocus-683	177	18	.	.	PUNCT
finefocus-683	178	1	acta	acta	PROPN
finefocus-683	178	2	vet	vet	PROPN
finefocus-683	178	3	scand	scand	PROPN
finefocus-683	178	4	58:191	58:191	NUM
finefocus-683	178	5	.	.	PUNCT
finefocus-683	179	1	3	3	NUM
finefocus-683	179	2	.	.	PUNCT
finefocus-683	179	3	brodie	brodie	PROPN
finefocus-683	179	4	r	r	PROPN
finefocus-683	179	5	,	,	PUNCT
finefocus-683	179	6	roper	roper	NOUN
finefocus-683	179	7	rl	rl	PROPN
finefocus-683	179	8	,	,	PUNCT
finefocus-683	179	9	upton	upton	PROPN
finefocus-683	179	10	c.	c.	PROPN
finefocus-683	179	11	2004	2004	PROPN
finefocus-683	179	12	.	.	PUNCT
finefocus-683	180	1	jdotter	jdotter	ADV
finefocus-683	180	2	:	:	PUNCT
finefocus-683	180	3	a	a	DET
finefocus-683	180	4	java	java	NOUN
finefocus-683	180	5	interface	interface	NOUN
finefocus-683	180	6	to	to	ADP
finefocus-683	180	7	multiple	multiple	ADJ
finefocus-683	180	8	dotplots	dotplot	NOUN
finefocus-683	180	9	generated	generate	VERB
finefocus-683	180	10	by	by	ADP
finefocus-683	180	11	dotter	dotter	PROPN
finefocus-683	180	12	.	.	PUNCT
finefocus-683	181	1	bioinformatics	bioinformatic	NOUN
finefocus-683	181	2	20:279–81	20:279–81	NUM
finefocus-683	181	3	.	.	PUNCT
finefocus-683	182	1	4	4	X
finefocus-683	182	2	.	.	X
finefocus-683	182	3	chapman	chapman	PROPN
finefocus-683	182	4	dag	dag	PROPN
finefocus-683	182	5	,	,	PUNCT
finefocus-683	182	6	tcherepanov	tcherepanov	NOUN
finefocus-683	182	7	v	v	PROPN
finefocus-683	182	8	,	,	PUNCT
finefocus-683	182	9	upton	upton	PROPN
finefocus-683	182	10	c	c	PROPN
finefocus-683	182	11	,	,	PUNCT
finefocus-683	182	12	dixon	dixon	PROPN
finefocus-683	182	13	lk	lk	PROPN
finefocus-683	182	14	.	.	PROPN
finefocus-683	182	15	2008	2008	NUM
finefocus-683	182	16	.	.	PUNCT
finefocus-683	183	1	comparison	comparison	NOUN
finefocus-683	183	2	of	of	ADP
finefocus-683	183	3	the	the	DET
finefocus-683	183	4	genome	genome	NOUN
finefocus-683	183	5	sequences	sequence	NOUN
finefocus-683	183	6	of	of	ADP
finefocus-683	183	7	non	non	ADJ
finefocus-683	183	8	-	-	ADJ
finefocus-683	183	9	pathogenic	pathogenic	ADJ
finefocus-683	183	10	and	and	CCONJ
finefocus-683	183	11	pathogenic	pathogenic	ADJ
finefocus-683	183	12	african	african	ADJ
finefocus-683	183	13	swine	swine	ADJ
finefocus-683	183	14	fever	fever	NOUN
finefocus-683	183	15	virus	virus	NOUN
finefocus-683	183	16	isolates	isolate	NOUN
finefocus-683	183	17	.	.	PUNCT
finefocus-683	184	1	j.	j.	PROPN
finefocus-683	184	2	gen	gen	PROPN
finefocus-683	184	3	.	.	PROPN
finefocus-683	184	4	virol	virol	PROPN
finefocus-683	184	5	89:397–408	89:397–408	NUM
finefocus-683	184	6	.	.	PUNCT
finefocus-683	185	1	5	5	NUM
finefocus-683	185	2	.	.	X
finefocus-683	185	3	cisek	cisek	PROPN
finefocus-683	185	4	aa	aa	NOUN
finefocus-683	185	5	,	,	PUNCT
finefocus-683	185	6	dąbrowska	dąbrowska	VERB
finefocus-683	185	7	i	i	PRON
finefocus-683	185	8	,	,	PUNCT
finefocus-683	185	9	gregorczyk	gregorczyk	PROPN
finefocus-683	185	10	kp	kp	PROPN
finefocus-683	185	11	,	,	PUNCT
finefocus-683	185	12	wyżewski	wyżewski	NOUN
finefocus-683	185	13	z.	z.	PROPN
finefocus-683	185	14	2016	2016	NUM
finefocus-683	185	15	.	.	PUNCT
finefocus-683	186	1	african	african	ADJ
finefocus-683	186	2	swine	swine	ADJ
finefocus-683	186	3	fever	fever	NOUN
finefocus-683	186	4	virus	virus	NOUN
finefocus-683	186	5	:	:	PUNCT
finefocus-683	186	6	a	a	DET
finefocus-683	186	7	new	new	ADJ
finefocus-683	186	8	old	old	ADJ
finefocus-683	186	9	enemy	enemy	NOUN
finefocus-683	186	10	of	of	ADP
finefocus-683	186	11	europe	europe	PROPN
finefocus-683	186	12	.	.	PUNCT
finefocus-683	187	1	ann	ann	PROPN
finefocus-683	187	2	parasitol	parasitol	NOUN
finefocus-683	187	3	62:161–67	62:161–67	PROPN
finefocus-683	187	4	.	.	PUNCT
finefocus-683	188	1	6	6	X
finefocus-683	188	2	.	.	PUNCT
finefocus-683	188	3	golding	golding	NOUN
finefocus-683	188	4	jp	jp	PROPN
finefocus-683	188	5	,	,	PUNCT
finefocus-683	188	6	goatley	goatley	PROPN
finefocus-683	188	7	l	l	PROPN
finefocus-683	188	8	,	,	PUNCT
finefocus-683	188	9	goodbourn	goodbourn	PROPN
finefocus-683	188	10	s	s	PART
finefocus-683	188	11	,	,	PUNCT
finefocus-683	188	12	dixon	dixon	PROPN
finefocus-683	188	13	lk	lk	PROPN
finefocus-683	188	14	,	,	PUNCT
finefocus-683	188	15	taylor	taylor	PROPN
finefocus-683	188	16	g	g	PROPN
finefocus-683	188	17	,	,	PUNCT
finefocus-683	188	18	netherton	netherton	PROPN
finefocus-683	188	19	cl	cl	NOUN
finefocus-683	188	20	.	.	PUNCT
finefocus-683	188	21	2016	2016	NUM
finefocus-683	188	22	.	.	PUNCT
finefocus-683	189	1	sensitivity	sensitivity	NOUN
finefocus-683	189	2	of	of	ADP
finefocus-683	189	3	african	african	ADJ
finefocus-683	189	4	swine	swine	ADJ
finefocus-683	189	5	fever	fever	NOUN
finefocus-683	189	6	virus	virus	NOUN
finefocus-683	189	7	to	to	PART
finefocus-683	189	8	type	type	VERB
finefocus-683	189	9	i	i	PRON
finefocus-683	189	10	interferon	interferon	NOUN
finefocus-683	189	11	is	be	AUX
finefocus-683	189	12	linked	link	VERB
finefocus-683	189	13	to	to	ADP
finefocus-683	189	14	genes	gene	NOUN
finefocus-683	189	15	within	within	ADP
finefocus-683	189	16	multigene	multigene	ADJ
finefocus-683	189	17	families	family	NOUN
finefocus-683	189	18	360	360	NUM
finefocus-683	189	19	and	and	CCONJ
finefocus-683	189	20	505	505	NUM
finefocus-683	189	21	.	.	PUNCT
finefocus-683	190	1	virology	virology	NOUN
finefocus-683	190	2	493:154–61	493:154–61	NUM
finefocus-683	190	3	.	.	PUNCT
finefocus-683	191	1	7	7	X
finefocus-683	191	2	.	.	X
finefocus-683	191	3	guinat	guinat	PROPN
finefocus-683	191	4	c	c	PROPN
finefocus-683	191	5	,	,	PUNCT
finefocus-683	191	6	gogin	gogin	VERB
finefocus-683	191	7	a	a	DET
finefocus-683	191	8	,	,	PUNCT
finefocus-683	191	9	blome	blome	NOUN
finefocus-683	191	10	s	s	PROPN
finefocus-683	191	11	,	,	PUNCT
finefocus-683	191	12	keil	keil	PROPN
finefocus-683	191	13	g	g	PROPN
finefocus-683	191	14	,	,	PUNCT
finefocus-683	191	15	pollin	pollin	PROPN
finefocus-683	191	16	r	r	PROPN
finefocus-683	191	17	,	,	PUNCT
finefocus-683	191	18	et	et	PROPN
finefocus-683	191	19	al	al	PROPN
finefocus-683	191	20	.	.	PROPN
finefocus-683	191	21	2016	2016	NUM
finefocus-683	191	22	.	.	PUNCT
finefocus-683	192	1	transmission	transmission	NOUN
finefocus-683	192	2	routes	route	NOUN
finefocus-683	192	3	of	of	ADP
finefocus-683	192	4	african	african	ADJ
finefocus-683	192	5	swine	swine	ADJ
finefocus-683	192	6	fever	fever	NOUN
finefocus-683	192	7	virus	virus	NOUN
finefocus-683	192	8	to	to	ADP
finefocus-683	192	9	domestic	domestic	ADJ
finefocus-683	192	10	pigs	pig	NOUN
finefocus-683	192	11	:	:	PUNCT
finefocus-683	192	12	current	current	ADJ
finefocus-683	192	13	knowledge	knowledge	NOUN
finefocus-683	192	14	and	and	CCONJ
finefocus-683	192	15	future	future	ADJ
finefocus-683	192	16	research	research	NOUN
finefocus-683	192	17	directions	direction	NOUN
finefocus-683	192	18	.	.	PUNCT
finefocus-683	193	1	veterinary	veterinary	ADJ
finefocus-683	193	2	record	record	NOUN
finefocus-683	193	3	178:262–67	178:262–67	NUM
finefocus-683	193	4	.	.	PUNCT
finefocus-683	194	1	8	8	NUM
finefocus-683	194	2	.	.	PUNCT
finefocus-683	195	1	hillary	hillary	PROPN
finefocus-683	195	2	w	w	PROPN
finefocus-683	195	3	,	,	PUNCT
finefocus-683	195	4	lin	lin	PROPN
finefocus-683	195	5	s	s	PROPN
finefocus-683	195	6	-	-	PUNCT
finefocus-683	195	7	h	h	PROPN
finefocus-683	195	8	,	,	PUNCT
finefocus-683	195	9	upton	upton	PROPN
finefocus-683	195	10	c.	c.	PROPN
finefocus-683	195	11	2011	2011	NUM
finefocus-683	195	12	.	.	PUNCT
finefocus-683	196	1	base	base	NOUN
finefocus-683	196	2	-	-	PUNCT
finefocus-683	196	3	by	by	ADP
finefocus-683	196	4	-	-	PUNCT
finefocus-683	196	5	base	base	NOUN
finefocus-683	196	6	version	version	NOUN
finefocus-683	196	7	2	2	NUM
finefocus-683	196	8	:	:	PUNCT
finefocus-683	196	9	single	single	ADJ
finefocus-683	196	10	nucleotide	nucleotide	NOUN
finefocus-683	196	11	-	-	PUNCT
finefocus-683	196	12	level	level	NOUN
finefocus-683	196	13	analysis	analysis	NOUN
finefocus-683	196	14	of	of	ADP
finefocus-683	196	15	whole	whole	ADJ
finefocus-683	196	16	viral	viral	ADJ
finefocus-683	196	17	genome	genome	NOUN
finefocus-683	196	18	alignments	alignment	NOUN
finefocus-683	196	19	.	.	PUNCT
finefocus-683	197	1	microb	microb	PROPN
finefocus-683	197	2	inform	inform	VERB
finefocus-683	197	3	exp	exp	NOUN
finefocus-683	197	4	1:2	1:2	NUM
finefocus-683	197	5	.	.	PUNCT
finefocus-683	198	1	9	9	NUM
finefocus-683	198	2	.	.	X
finefocus-683	198	3	jori	jori	PROPN
finefocus-683	198	4	f	f	PROPN
finefocus-683	198	5	,	,	PUNCT
finefocus-683	198	6	vial	vial	ADJ
finefocus-683	198	7	l	l	NOUN
finefocus-683	198	8	,	,	PUNCT
finefocus-683	198	9	penrith	penrith	PROPN
finefocus-683	198	10	ml	ml	NOUN
finefocus-683	198	11	,	,	PUNCT
finefocus-683	198	12	pérez	pérez	NOUN
finefocus-683	198	13	-	-	PUNCT
finefocus-683	198	14	sánchez	sánchez	NOUN
finefocus-683	198	15	r	r	NOUN
finefocus-683	198	16	,	,	PUNCT
finefocus-683	198	17	etter	etter	PROPN
finefocus-683	198	18	e	e	PROPN
finefocus-683	198	19	,	,	PUNCT
finefocus-683	198	20	et	et	PROPN
finefocus-683	198	21	al	al	PROPN
finefocus-683	198	22	.	.	PROPN
finefocus-683	198	23	2013	2013	NUM
finefocus-683	198	24	.	.	PUNCT
finefocus-683	199	1	review	review	NOUN
finefocus-683	199	2	of	of	ADP
finefocus-683	199	3	the	the	DET
finefocus-683	199	4	sylvatic	sylvatic	ADJ
finefocus-683	199	5	cycle	cycle	NOUN
finefocus-683	199	6	of	of	ADP
finefocus-683	199	7	african	african	ADJ
finefocus-683	199	8	swine	swine	ADJ
finefocus-683	199	9	fever	fever	NOUN
finefocus-683	199	10	in	in	ADP
finefocus-683	199	11	sub	sub	ADJ
finefocus-683	199	12	-	-	ADJ
finefocus-683	199	13	saharan	saharan	ADJ
finefocus-683	199	14	africa	africa	PROPN
finefocus-683	199	15	and	and	CCONJ
finefocus-683	199	16	the	the	DET
finefocus-683	199	17	indian	indian	PROPN
finefocus-683	199	18	ocean	ocean	PROPN
finefocus-683	199	19	.	.	PUNCT
finefocus-683	200	1	pubmed	pubmed	PROPN
finefocus-683	200	2	ncbi	ncbi	PROPN
finefocus-683	200	3	.	.	PUNCT
finefocus-683	201	1	virus	virus	NOUN
finefocus-683	201	2	res	re	VERB
finefocus-683	201	3	173:212–27	173:212–27	NUM
finefocus-683	201	4	.	.	PUNCT
finefocus-683	202	1	10	10	NUM
finefocus-683	202	2	.	.	PUNCT
finefocus-683	203	1	kazutaka	kazutaka	PROPN
finefocus-683	203	2	k	k	PROPN
finefocus-683	203	3	,	,	PUNCT
finefocus-683	203	4	standley	standley	PROPN
finefocus-683	203	5	dm	dm	PROPN
finefocus-683	203	6	.	.	PROPN
finefocus-683	203	7	2013	2013	NUM
finefocus-683	203	8	.	.	PUNCT
finefocus-683	204	1	mafft	mafft	PROPN
finefocus-683	204	2	multiple	multiple	ADJ
finefocus-683	204	3	sequence	sequence	NOUN
finefocus-683	204	4	alignment	alignment	NOUN
finefocus-683	204	5	software	software	NOUN
finefocus-683	204	6	version	version	NOUN
finefocus-683	204	7	7	7	NUM
finefocus-683	204	8	:	:	PUNCT
finefocus-683	204	9	improvements	improvement	NOUN
finefocus-683	204	10	in	in	ADP
finefocus-683	204	11	performance	performance	NOUN
finefocus-683	204	12	and	and	CCONJ
finefocus-683	204	13	usability	usability	NOUN
finefocus-683	204	14	.	.	PUNCT
finefocus-683	205	1	mol	mol	PROPN
finefocus-683	205	2	.	.	PUNCT
finefocus-683	206	1	biol	biol	PROPN
finefocus-683	206	2	.	.	PUNCT
finefocus-683	207	1	evol	evol	NOUN
finefocus-683	207	2	30:772–80	30:772–80	PROPN
finefocus-683	207	3	.	.	PUNCT
finefocus-683	208	1	11	11	NUM
finefocus-683	208	2	.	.	PUNCT
finefocus-683	209	1	kumar	kumar	PROPN
finefocus-683	209	2	s	s	PROPN
finefocus-683	209	3	,	,	PUNCT
finefocus-683	209	4	stecher	stecher	NOUN
finefocus-683	209	5	g	g	NOUN
finefocus-683	209	6	,	,	PUNCT
finefocus-683	209	7	tamura	tamura	PROPN
finefocus-683	209	8	k.	k.	PROPN
finefocus-683	209	9	2016	2016	NUM
finefocus-683	209	10	.	.	PUNCT
finefocus-683	210	1	mega7	mega7	NOUN
finefocus-683	210	2	:	:	PUNCT
finefocus-683	210	3	molecular	molecular	ADJ
finefocus-683	210	4	evolutionary	evolutionary	ADJ
finefocus-683	210	5	genetics	genetic	NOUN
finefocus-683	210	6	analysis	analysis	NOUN
finefocus-683	210	7	version	version	NOUN
finefocus-683	210	8	7.0	7.0	NUM
finefocus-683	210	9	for	for	ADP
finefocus-683	210	10	bigger	big	ADJ
finefocus-683	210	11	datasets	dataset	NOUN
finefocus-683	210	12	.	.	PUNCT
finefocus-683	211	1	mol	mol	PROPN
finefocus-683	211	2	.	.	PUNCT
finefocus-683	212	1	biol	biol	PROPN
finefocus-683	212	2	.	.	PUNCT
finefocus-683	213	1	evol	evol	NOUN
finefocus-683	213	2	33:1870–74	33:1870–74	PROPN
finefocus-683	213	3	.	.	PROPN
finefocus-683	214	1	12	12	NUM
finefocus-683	214	2	.	.	PUNCT
finefocus-683	215	1	malogolovkin	malogolovkin	PROPN
finefocus-683	215	2	a	a	PROPN
finefocus-683	215	3	,	,	PUNCT
finefocus-683	215	4	burmakina	burmakina	NOUN
finefocus-683	215	5	g	g	NOUN
finefocus-683	215	6	,	,	PUNCT
finefocus-683	215	7	titov	titov	PROPN
finefocus-683	215	8	i	i	PRON
finefocus-683	215	9	,	,	PUNCT
finefocus-683	215	10	sereda	sereda	VERB
finefocus-683	215	11	a	a	PRON
finefocus-683	215	12	,	,	PUNCT
finefocus-683	215	13	gogin	gogin	VERB
finefocus-683	215	14	a	a	PRON
finefocus-683	215	15	,	,	PUNCT
finefocus-683	215	16	et	et	PROPN
finefocus-683	215	17	al	al	PROPN
finefocus-683	215	18	.	.	PROPN
finefocus-683	215	19	2015	2015	NUM
finefocus-683	215	20	.	.	PUNCT
finefocus-683	216	1	comparative	comparative	ADJ
finefocus-683	216	2	analysis	analysis	NOUN
finefocus-683	216	3	of	of	ADP
finefocus-683	216	4	african	african	ADJ
finefocus-683	216	5	swine	swine	ADJ
finefocus-683	216	6	fever	fever	NOUN
finefocus-683	216	7	virus	virus	NOUN
finefocus-683	216	8	genotypes	genotype	NOUN
finefocus-683	216	9	and	and	CCONJ
finefocus-683	216	10	serogroups	serogroup	NOUN
finefocus-683	216	11	.	.	PUNCT
finefocus-683	217	1	emerg	emerg	PROPN
finefocus-683	217	2	infect	infect	ADJ
finefocus-683	217	3	dis	dis	PROPN
finefocus-683	217	4	21:312–15	21:312–15	NUM
finefocus-683	217	5	.	.	PUNCT
finefocus-683	218	1	13	13	NUM
finefocus-683	218	2	.	.	PUNCT
finefocus-683	219	1	muangkram	muangkram	PROPN
finefocus-683	219	2	y	y	PROPN
finefocus-683	219	3	,	,	PUNCT
finefocus-683	219	4	sukmak	sukmak	PROPN
finefocus-683	219	5	m	m	PROPN
finefocus-683	219	6	,	,	PUNCT
finefocus-683	219	7	wajjwalku	wajjwalku	PROPN
finefocus-683	219	8	w.	w.	PROPN
finefocus-683	219	9	2015	2015	NUM
finefocus-683	219	10	.	.	PUNCT
finefocus-683	220	1	phylogeographic	phylogeographic	ADJ
finefocus-683	220	2	analysis	analysis	NOUN
finefocus-683	220	3	of	of	ADP
finefocus-683	220	4	african	african	ADJ
finefocus-683	220	5	swine	swine	ADJ
finefocus-683	220	6	fever	fever	NOUN
finefocus-683	220	7	virus	virus	NOUN
finefocus-683	220	8	based	base	VERB
finefocus-683	220	9	on	on	ADP
finefocus-683	220	10	the	the	DET
finefocus-683	220	11	p72	p72	ADJ
finefocus-683	220	12	gene	gene	NOUN
finefocus-683	220	13	sequence	sequence	NOUN
finefocus-683	220	14	.	.	PUNCT
finefocus-683	221	1	pubmed	pubmed	PROPN
finefocus-683	221	2	ncbi	ncbi	PROPN
finefocus-683	221	3	.	.	PUNCT
finefocus-683	222	1	genet	genet	PROPN
finefocus-683	222	2	.	.	PUNCT
finefocus-683	223	1	mol	mol	ADP
finefocus-683	223	2	res	re	NOUN
finefocus-683	223	3	14:4566–74	14:4566–74	NUM
finefocus-683	223	4	.	.	PUNCT
finefocus-683	224	1	14	14	NUM
finefocus-683	224	2	.	.	PUNCT
finefocus-683	225	1	o’donnell	o’donnell	NOUN
finefocus-683	225	2	v	v	NOUN
finefocus-683	225	3	,	,	PUNCT
finefocus-683	225	4	holinka	holinka	PROPN
finefocus-683	225	5	lg	lg	PROPN
finefocus-683	225	6	,	,	PUNCT
finefocus-683	225	7	gladue	gladue	ADJ
finefocus-683	225	8	dp	dp	PROPN
finefocus-683	225	9	,	,	PUNCT
finefocus-683	225	10	sanford	sanford	PROPN
finefocus-683	225	11	b	b	PROPN
finefocus-683	225	12	,	,	PUNCT
finefocus-683	225	13	krug	krug	PROPN
finefocus-683	225	14	pw	pw	PROPN
finefocus-683	225	15	,	,	PUNCT
finefocus-683	225	16	et	et	PROPN
finefocus-683	225	17	al	al	PROPN
finefocus-683	225	18	.	.	PROPN
finefocus-683	225	19	2015	2015	NUM
finefocus-683	225	20	.	.	PUNCT
finefocus-683	226	1	african	african	ADJ
finefocus-683	226	2	swine	swine	ADJ
finefocus-683	226	3	fever	fever	NOUN
finefocus-683	226	4	virus	virus	NOUN
finefocus-683	226	5	georgia	georgia	PROPN
finefocus-683	226	6	isolate	isolate	VERB
finefocus-683	226	7	harboring	harboring	NOUN
finefocus-683	226	8	deletions	deletion	NOUN
finefocus-683	226	9	of	of	ADP
finefocus-683	226	10	mgf360	mgf360	PROPN
finefocus-683	226	11	and	and	CCONJ
finefocus-683	226	12	mgf505	mgf505	PROPN
finefocus-683	226	13	genes	gene	NOUN
finefocus-683	226	14	is	be	AUX
finefocus-683	226	15	attenuated	attenuate	VERB
finefocus-683	226	16	in	in	ADP
finefocus-683	226	17	swine	swine	NOUN
finefocus-683	226	18	and	and	CCONJ
finefocus-683	226	19	confers	confer	VERB
finefocus-683	226	20	protection	protection	NOUN
finefocus-683	226	21	against	against	ADP
finefocus-683	226	22	challenge	challenge	NOUN
finefocus-683	226	23	with	with	ADP
finefocus-683	226	24	virulent	virulent	ADJ
finefocus-683	226	25	parental	parental	ADJ
finefocus-683	226	26	virus	virus	NOUN
finefocus-683	226	27	.	.	PUNCT
finefocus-683	227	1	j	j	PROPN
finefocus-683	227	2	virol	virol	PROPN
finefocus-683	227	3	89:6048–56	89:6048–56	NUM
finefocus-683	227	4	.	.	PUNCT
finefocus-683	228	1	15	15	NUM
finefocus-683	228	2	.	.	X
finefocus-683	228	3	rock	rock	PROPN
finefocus-683	228	4	dl	dl	PROPN
finefocus-683	228	5	.	.	PROPN
finefocus-683	228	6	2016	2016	NUM
finefocus-683	228	7	.	.	PUNCT
finefocus-683	229	1	challenges	challenge	NOUN
finefocus-683	229	2	for	for	ADP
finefocus-683	229	3	african	african	ADJ
finefocus-683	229	4	swine	swine	ADJ
finefocus-683	229	5	fever	fever	NOUN
finefocus-683	229	6	vaccine	vaccine	NOUN
finefocus-683	229	7	development	development	NOUN
finefocus-683	229	8	—	—	PUNCT
finefocus-683	229	9	“	"	PUNCT
finefocus-683	229	10	…	…	PUNCT
finefocus-683	229	11	perhaps	perhaps	ADV
finefocus-683	229	12	the	the	DET
finefocus-683	229	13	end	end	NOUN
finefocus-683	229	14	of	of	ADP
finefocus-683	229	15	the	the	DET
finefocus-683	229	16	beginning	beginning	NOUN
finefocus-683	229	17	..	..	PUNCT
finefocus-683	229	18	”	"	PUNCT
finefocus-683	229	19	vet	vet	NOUN
finefocus-683	229	20	.	.	PUNCT
finefocus-683	230	1	microbiol	microbiol	PROPN
finefocus-683	230	2	16	16	NUM
finefocus-683	230	3	.	.	PUNCT
finefocus-683	231	1	stamatakis	stamatakis	PROPN
finefocus-683	231	2	a.	a.	PROPN
finefocus-683	231	3	2014	2014	NUM
finefocus-683	231	4	.	.	PUNCT
finefocus-683	232	1	raxml	raxml	NOUN
finefocus-683	232	2	version	version	NOUN
finefocus-683	232	3	8	8	NUM
finefocus-683	232	4	:	:	PUNCT
finefocus-683	232	5	a	a	DET
finefocus-683	232	6	tool	tool	NOUN
finefocus-683	232	7	for	for	ADP
finefocus-683	232	8	phylogenetic	phylogenetic	ADJ
finefocus-683	232	9	analysis	analysis	NOUN
finefocus-683	232	10	and	and	CCONJ
finefocus-683	232	11	post	post	NOUN
finefocus-683	232	12	-	-	NOUN
finefocus-683	232	13	analysis	analysis	NOUN
finefocus-683	232	14	of	of	ADP
finefocus-683	232	15	large	large	ADJ
finefocus-683	232	16	phylogenies	phylogeny	NOUN
finefocus-683	232	17	.	.	PUNCT
finefocus-683	233	1	bioinformatics	bioinformatic	NOUN
finefocus-683	233	2	30:1312–13	30:1312–13	PROPN
finefocus-683	233	3	.	.	PUNCT
finefocus-683	234	1	17	17	NUM
finefocus-683	234	2	.	.	PUNCT
finefocus-683	235	1	tcherepanov	tcherepanov	NOUN
finefocus-683	235	2	v	v	NOUN
finefocus-683	235	3	,	,	PUNCT
finefocus-683	235	4	ehlers	ehlers	PROPN
finefocus-683	235	5	a	a	PROPN
finefocus-683	235	6	,	,	PUNCT
finefocus-683	235	7	upton	upton	PROPN
finefocus-683	235	8	c.	c.	PROPN
finefocus-683	235	9	2006	2006	NUM
finefocus-683	235	10	.	.	PUNCT
finefocus-683	236	1	genome	genome	NOUN
finefocus-683	236	2	annotation	annotation	NOUN
finefocus-683	236	3	transfer	transfer	NOUN
finefocus-683	236	4	utility	utility	NOUN
finefocus-683	236	5	(	(	PUNCT
finefocus-683	236	6	gatu	gatu	NOUN
finefocus-683	236	7	):	):	PUNCT
finefocus-683	236	8	rapid	rapid	ADJ
finefocus-683	236	9	annotation	annotation	NOUN
finefocus-683	236	10	of	of	ADP
finefocus-683	236	11	viral	viral	ADJ
finefocus-683	236	12	genomes	genome	NOUN
finefocus-683	236	13	using	use	VERB
finefocus-683	236	14	a	a	DET
finefocus-683	236	15	closely	closely	ADV
finefocus-683	236	16	related	relate	VERB
finefocus-683	236	17	reference	reference	NOUN
finefocus-683	236	18	genome	genome	NOUN
finefocus-683	236	19	.	.	PUNCT
finefocus-683	237	1	bmc	bmc	NOUN
finefocus-683	237	2	genomics	genomic	NOUN
finefocus-683	237	3	7:150	7:150	PROPN
finefocus-683	237	4	.	.	PROPN
finefocus-683	238	1	18	18	NUM
finefocus-683	238	2	.	.	PUNCT
finefocus-683	239	1	tulman	tulman	PROPN
finefocus-683	239	2	er	er	INTJ
finefocus-683	239	3	,	,	PUNCT
finefocus-683	239	4	delhon	delhon	PROPN
finefocus-683	239	5	ga	ga	PROPN
finefocus-683	239	6	,	,	PUNCT
finefocus-683	239	7	ku	ku	PROPN
finefocus-683	239	8	bk	bk	PROPN
finefocus-683	239	9	,	,	PUNCT
finefocus-683	239	10	rock	rock	PROPN
finefocus-683	239	11	dl	dl	PROPN
finefocus-683	239	12	.	.	PROPN
finefocus-683	239	13	2009	2009	NUM
finefocus-683	239	14	.	.	PUNCT
finefocus-683	240	1	african	african	ADJ
finefocus-683	240	2	swine	swine	ADJ
finefocus-683	240	3	fever	fever	NOUN
finefocus-683	240	4	virus	virus	NOUN
finefocus-683	240	5	.	.	PUNCT
finefocus-683	241	1	curr	curr	PROPN
finefocus-683	241	2	top	top	PROPN
finefocus-683	241	3	microbiol	microbiol	PROPN
finefocus-683	241	4	immunol	immunol	NOUN
finefocus-683	241	5	328:43–87	328:43–87	PROPN
finefocus-683	241	6	.	.	PROPN
finefocus-683	242	1	19	19	NUM
finefocus-683	242	2	.	.	PUNCT
finefocus-683	242	3	zakaryan	zakaryan	PROPN
finefocus-683	242	4	h	h	PROPN
finefocus-683	242	5	,	,	PUNCT
finefocus-683	242	6	revilla	revilla	PROPN
finefocus-683	242	7	y.	y.	PROPN
finefocus-683	242	8	2016	2016	NUM
finefocus-683	242	9	.	.	PUNCT
finefocus-683	243	1	african	african	ADJ
finefocus-683	243	2	swine	swine	ADJ
finefocus-683	243	3	fever	fever	NOUN
finefocus-683	243	4	virus	virus	NOUN
finefocus-683	243	5	:	:	PUNCT
finefocus-683	243	6	current	current	ADJ
finefocus-683	243	7	state	state	NOUN
finefocus-683	243	8	and	and	CCONJ
finefocus-683	243	9	future	future	ADJ
finefocus-683	243	10	perspectives	perspective	NOUN
finefocus-683	243	11	in	in	ADP
finefocus-683	243	12	vaccine	vaccine	NOUN
finefocus-683	243	13	and	and	CCONJ
finefocus-683	243	14	antiviral	antiviral	ADJ
finefocus-683	243	15	research	research	NOUN
finefocus-683	243	16	.	.	PUNCT
finefocus-683	244	1	vet	vet	NOUN
finefocus-683	244	2	.	.	PUNCT
finefocus-683	244	3	microbiol	microbiol	PROPN
finefocus-683	245	1	185:15–19	185:15–19	NUM
finefocus-683	245	2	.	.	PUNCT
finefocus-683	246	1	we	we	PRON
finefocus-683	246	2	would	would	AUX
finefocus-683	246	3	like	like	VERB
finefocus-683	246	4	to	to	PART
finefocus-683	246	5	thank	thank	VERB
finefocus-683	246	6	chad	chad	PROPN
finefocus-683	246	7	smithson	smithson	PROPN
finefocus-683	246	8	for	for	ADP
finefocus-683	246	9	his	his	PRON
finefocus-683	246	10	help	help	NOUN
finefocus-683	246	11	and	and	CCONJ
finefocus-683	246	12	the	the	DET
finefocus-683	246	13	many	many	ADJ
finefocus-683	246	14	co	co	NOUN
finefocus-683	246	15	-	-	NOUN
finefocus-683	246	16	op	op	NOUN
finefocus-683	246	17	students	student	NOUN
finefocus-683	246	18	from	from	ADP
finefocus-683	246	19	the	the	DET
finefocus-683	246	20	university	university	PROPN
finefocus-683	246	21	of	of	ADP
finefocus-683	246	22	victoria	victoria	PROPN
finefocus-683	246	23	who	who	PRON
finefocus-683	246	24	have	have	AUX
finefocus-683	246	25	built	build	VERB
finefocus-683	246	26	the	the	DET
finefocus-683	246	27	viral	viral	ADJ
finefocus-683	246	28	bioinformatics	bioinformatics	NOUN
finefocus-683	246	29	resource	resource	NOUN
finefocus-683	246	30	center	center	NOUN
finefocus-683	246	31	(	(	PUNCT
finefocus-683	246	32	virology.uvic.ca	virology.uvic.ca	NOUN
finefocus-683	246	33	)	)	PUNCT
finefocus-683	246	34	.	.	PUNCT
finefocus-683	247	1	acknowledgments	acknowledgment	NOUN
finefocus-683	247	2	references	reference	VERB
finefocus-683	247	3	170	170	NUM
finefocus-683	247	4	african	african	ADJ
finefocus-683	247	5	swine	swine	ADJ
finefocus-683	247	6	fever	fever	NOUN
finefocus-683	247	7	virus	virus	NOUN
finefocus-683	247	8	•	•	ADV
finefocus-683	247	9	171	171	NUM