Int. J. Aquat. Biol. (2020) 8(4): 272-280 

ISSN: 2322-5270; P-ISSN: 2383-0956

Journal homepage: www.ij-aquaticbiology.com 

© 2020 Iranian Society of Ichthyology 

Original Article 
Prey identification of invasive peacock bass from Telabak Lake Malaysia using DNA 

barcoding technique 
 

Aliyu Garba Khaleel1,2, Najlaa Nawwarah Rusli1, Nurul Izzati Mohd Radzif1, Aiman Syafiq Muhd Nasir1, Mohamad 

Zulkarnain Mohd Dali1, Norshida Ismail1, Hou Chew Ha1, Ahmad-Syazni Kamarudin*1 

 
1School of Animal Science, Faculty of Bioresources and Food Industry, Universiti Sultan Zainal Abidin, Besut Campus, 22200 Besut, Terengganu, Malaysia. 

2Department of Animal Science, Faculty of Agriculture and Agricultural Technology, Kano University of Science and Technology, Wudil, P.M.B. 3244 Kano State, 
Nigeria.

 

 

 

 

s 

Article history: 
Received 7 June 2020 

Accepted 21 August 2020 

Available online 2 5 August 2020 

Keywords:  
Conservation 

Feeding habit 

Invasive species  

Abstract: Invasive peacock bass Cichla spp. have recently invaded freshwater habitats across 
Malaysia. Stomach contents of 135 peacock bass captured from the Telabak Lake of East Coast of 

Peninsular Malaysia were analysed. The preys were examined using visual identification method and 

mitochondrial DNA barcoding technique to identify the partial digested and decaying preys in the 

stomach. The current study identified 7 prey species (6 fishes 43.0% and 1 shrimp 5.1%) belongs to 

5 families in fishes’ stomach. The results revealed that peacock bass is highly predator and generalist 

feeder with an opportunistic feeding behaviour. It is highly important to reduce and monitor the 

abundance of this species for future survival of native species in the lake. 

  

Introduction 

The existence of an invasive fish species especially in 

inland waters is regarded as a crucial challenge in the 

conservation of tropical fish biodiversity (Clavero and 

Garcia-Berthou, 2005; Agostinho et al., 2005; 

Cucherousset and Olden, 2011; Matsuzaki et al., 
2016). Non-native fish species are intentionally or 

accidentally introduced to a new habitat by human 

activities (Radkhah et al., 2016; Mousavi-Sabet and 

Eagderi, 2016; Eagderi et al., 2018). Peacock bass 

Cichla spp. are highly predatory fishes originated from 
the Amazon and introduced to many countries (Fugi 

et al., 2008; Kovalenko et al., 2009; Marques et al., 
2016). These fishes were intentionally introduced into 

Malaysian freshwater by anglers in early 1990s 

(Rahim et al., 2013). Since then, it spreads to many 

freshwater bodies such as Temengor Reservoir and 

Lake, Raban Lake, Kapal Tujuh Lake, Kampar River 

(Hamid and Mansor, 2013; Desa and Aidi, 2013; Saat 

et al., 2014; Tan and Sze, 2017; Yap et al., 2016; Ng 
et al., 2018). Peacock bass exert high predation on 
prey fish population which may lead to the decreasing 

of the prey fish abundances and diversity in a 

 
*Correspondence: Ahmad-Syazni Kamarudin 

E-mail: ahmadsyazni@unisza.edu.my 

particular area (Zaret and Paine, 1973; Santos et al., 

2001; Pelicice and Agostinho, 2008; Franco et al., 
2017). These fishes are daytime active piscivorous 

that consume a wide range of prey and tend to ingest 

the whole prey (Zhao et al., 2014). To date, there is no 

documentation regarding their prey species across 

Malaysian freshwater bodies. Thus, diet composition 

study of this invasive fishes is necessary for better 

understanding of their ecological impacts on native 

biodiversity (Garvey and Chipps, 2012). 

Study on piscivorous fish diet composition is 

traditionally based on stomach contents analysis. 

Visual identification methods have been widely used 

in taxonomic identification of fish diet content (Morris 

and Akins, 2009; Layman and Allgeier, 2012; Côté et 

al., 2013). However, this method has failed to identify 

70% prey content to the lowest taxonomic species 

level in the stomach content due to high digestion 

effect and prey degradation (Morris and Akins, 2009; 

Côté et al., 2013). This weakness, especially at low 

sample sizes may bias the ecological impact 

predictions since the detected prey might not represent 

the unknown percentage (Côté et al., 2013). 



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Int. J. Aquat. Biol. (2020) 8(4): 272-280 

 Therefore, DNA barcoding technique is used for high 

taxonomic resolution of fish diet as a supplement to 

traditional method (Leray et al., 2011). 

Analysis of mitochondrial DNA is proven to be a 

useful tool for the study of genetic diversity (Ahmad-

Syazni et al., 2017; Ha et al., 2017; Khaleel et al., 
2019) and species identification (Li et al., 2019; 

Golani et al., 2019). Matching of a short DNA 

sequences from unknown samples to known 

sequences in global databases such as National Centre 

for Biotechnology Information (NCBI) and Barcode 

of Life Database (BOLD) is known as barcoding 

(Ratnasingham and Hebert, 2007; Moran et al., 2015). 

This approach has been used effectively to classify 

dietary components in fishes (Côté et al., 2013; Moran 

et al., 2015), small body sized larval fish (Riemann et 

al., 2010), rare deep-water sharks (Dunn et al., 2010), 

and coral reef fish with rich generalist diet (Leray et 

al., 2011). Telabak Lake is a man-made freshwater 

lake which play a pivotal socio-economic and 

ecosystem role for the people living in the surrounding 

area (Khaleel et al., 2020). Freshwater lakes in 

Malaysia are known for the vast diversity of the 

aquatic live and fishes (Shahabudin and Musa, 2018). 

However, the introduction of invasive species such as 

peacock bass which preying on native fishes might 

give a threatening effect on the fish diversity. In this 

regard, current study aimed to provide first 

information concerning the prey identification and 

feeding habit of peacock bass in Telabak Lake, 

Malaysia using DNA barcoding technique.  

 

Materials and Methods 

Sampling: A total of 135 peacock bass samples with 
average total body length of 24±2.1 cm and body 

weight of 244±2.3 g were collected from the Telabak 

Lake (5°37'56.9"N, 102°28'24.5"E), East Coast of 

Peninsular Malaysia from October 2018 to January 

2019. The samples were immediately transferred to 

the Aquatic Laboratory, Faculty of Bioresources and 

Food Industry, University Sultan Zainal Abidin 

Malaysia for further analyses. 

Taxonomic classification and feeding habit: Fish were 

dissected to remove the stomach content based on 

Barbato et al. (2019). Following the protocol of Côté 

et al. (2013) with some modification, all prey items in 

the stomach were identified to the minimum 

taxonomic level. The highly digested preys with 

difficulty to identify were classified as fish and 

invertebrates, labelled separately and frozen. The 

feeding regime of Cichla spp. was measured in 
qualitative and quantitative methods based on Hynes 

(1950) and Sahtout et al. (2018). The following 

indices were used to evaluate the importance of 

different prey items in the diets of Cichla spp. 
𝑉𝐶 (%) = 𝑁𝑜. 𝑜𝑓 𝑒𝑚𝑝𝑡𝑦 𝑠𝑡𝑜𝑚𝑎𝑐ℎ ×

 
100

𝑁𝑜.  𝑜𝑓 𝑓𝑢𝑙𝑙 𝑠𝑡𝑜𝑚𝑎𝑐ℎ𝑠
 (Peyami et al., 2018) 

 𝐹𝑂 (%) = 𝑁𝑜. 𝑜𝑓 𝑠𝑡𝑜𝑚𝑎𝑐ℎ 𝑐𝑜𝑛𝑡𝑎𝑖𝑛𝑖𝑛𝑔 𝑝𝑟𝑒𝑦 ×

 
100

𝑁𝑜.  𝑜𝑓 𝑓𝑢𝑙𝑙 𝑠𝑡𝑜𝑚𝑎𝑐ℎ𝑠
 (Ashelby et al., 2016) 

𝑁𝐼 (%) = 𝑁𝑜. 𝑜𝑓 𝑖𝑛𝑑𝑖𝑣𝑖𝑑𝑢𝑎𝑙 𝑝𝑟𝑒𝑦 𝑖𝑡𝑒𝑚𝑠 ×

 
100

𝑇𝑜𝑡𝑎𝑙 𝑁𝑜.  𝑜𝑓 𝑝𝑟𝑒𝑦𝑠
 (Karimi et al., 2019) 

𝑉𝐼 (%) = 𝑊𝑒𝑖𝑔ℎ𝑡 𝑜𝑓 𝑝𝑟𝑒𝑦 𝑖𝑡𝑒𝑚𝑠 ×

 
100

𝑇𝑜𝑡𝑎𝑙 𝑤𝑒𝑖𝑔ℎ𝑡  𝑜𝑓 𝑠𝑡𝑜𝑚𝑎𝑐ℎ 𝑐𝑜𝑛𝑡𝑒𝑛𝑡
 (Karimi et al., 2019) 

𝐼𝑅𝐼 = (%𝑁 + %𝑉) × %𝐹 (Barbato et al., 2019) 

Where VC is vacuity coefficient, FO = frequency 

of occurrence, NI = number of individuals, VI = 

volume of individuals and IRI = index of relative 

importance. 

Barcoding sample preparations: A small piece of the 

muscle tissue (2-3 mm3) was used from every frozen 

prey item identified as fish and invertebrates, 

respectively. Then, all samples were carefully taken 

from each prey (preferably from dorsal muscle). To 

minimize the sample contamination by peacock bass 

cells, approximately 1 mm top layer of the tissue 

muscle of the prey that has direct contact to stomach 

fluids were removed prior to sampling for barcoding. 

All tools were sterilized using 95% ethanol and 

Bunsen burner flame between each sample removing 

to avoid any possible contamination. 

Prey DNA extraction, amplification and sequencing: 

The total genomic DNA of each prey item was isolated 

using Favorgen DNA extraction Kit (Favorgen 

Biotech Corp., Ping-Tung 908, Taiwan) by following 

manufacturer’s protocol. The partial COI gene of 

mitochondrial DNA was amplified by PCR using the 

universal primers COI-Fish2 F (5’TCGACTAATCA 



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Khaleel et al./ Invasive peacock bass prey identification in Malaysia 

TAAAGATATCGGCAC3’) and COI-Fish2 

R (5’ACTTCAGGGTGACCGAAGAATCAGAA3’) 

(Ward et al., 2005) for unidentified fish samples and 

LCO1490: 5'-GGTCAACAAATCATAAAGATATT 

GG-3' and HCO2198: 5'-TAAACTTCAGGGTGAC 

CAAAAAATCA-3' (Folmer et al., 1994) for 

unidentified invertebrates. For both fish and 

invertebrates preys, the PCR was carried out in a 25 μl 

reaction volume containing 18.2 μl sterile distilled 

water, 2.5 μl Taq buffer, 2.0 μl dNTP Mix (2.5mM), 

0.5 μl of each primer (10 μM), 0.3 μl of 5 unit/μl Taq 

polymerase (TaKaRa) and 1 μl template DNA (1-50 

ng/μl) on a thermal cycler PCR machine Veriti 96 

Well Thermal Cycler (Applied Biosystem, California, 

USA), under the following thermal cycling conditions. 

Initial denaturation at 95°C for 5 min, 35 cycles 

including denaturation at 95°C for 30s, annealing at 

50°C for 30s and elongation at 72°C for 10 min, 

followed by final extension for 10 min at 72°C and the 

PCR product was maintained at 4°C. Sequencing was 

succeeded using BigDye Terminator v3.1 cycle 

sequencing kit (Applied Biosystems) following 

manufacturer's instructions, performed on an ABI 

Prism 3730xl Genetic Analyser (Applied Biosystems). 

Data analysis: Unknown sequences from fish and 

invertebrates were aligned and edited using ClustalW 

multiple sequence alignment program in MEGA 7 

(Kumar et al., 2016). DnaSP software was used to 

determine the variable sites among the sequence 

(Librado and Rozas, 2009). To discover the taxonomy 

of each prey species, the obtained haplotypes were 

queried using basic local alignment search tool 

(BLAST) against National Center for Biotechnology 

(NCBI) nucleotide database. A top species match was 

identified with a sequence similarity of at least >94% 

to avoid false positives. Number of observed and 

detected prey species in the stomach of peacock bass 

was computed in percentages using Minitab 16 

software.  

 

Results 

Feeding intensity of peacock bass: Among 135 

examined stomach contents monthly from October 

2018 till January 2019, 70 were empty (average 

51.8%) with high value in December (87%) and 

sudden decline in January (26%) (Fig. 1). Using visual 

identification method, the remaining prey samples 

were successfully identified as fish and invertebrates 

with their percentages (Fig. 2B, C, respectively). 

Table 1. Monthly variations of peacock bass dietary items with respect to their percentage frequency of occurrence (%FO), percentage number of 

individual (%NI), percentage volume of individuals (%VI) and percentage index of relative importance (%IRI). 

 

Variables Prey Oct. Nov. Dec. Jan. Male Female 

FO (%)  Fish 68.4 85.7 66.7 78.6 42.2 04.7 

 Invertebrates 42.1 25.0 33.3 42.9 26.6 32.8 

NI (%) Fish 64.5 80.5 20.0 65.2 38.0 31.0 

 Invertebrates 35.5 19.5 80.0 34.8 05.0 26.0 

VI (%) Fish 67.1 42.1 62.7 57.5 23.5 31.1 

 Invertebrates 04.1 01.1 04.4 02.5 01.9 00.7 

IRI (%) Fish 84.4 87.2 32.8 85.8 92.6 96.3 

 Invertebrates 15.6 12.8 67.2 14.2 07.4 04.7 

 

Figure 1. Monthly variations of vacuity index of peacock bass 

stomachs examined between October 2018 and January 2019. 



275 
 

Int. J. Aquat. Biol. (2020) 8(4): 272-280 

 

However, it failed to classify prey to their lowest 

taxonomy due to high ingestion effect and 

degradation. Table 1 provides the overall results of the 

classification and diet composition on prey of the 

examined peacock bass between October 2018 and 

January 2019. The fish preys dominated the entire diet 

with the exception of December at which high number 

values of invertebrates were recorded.  

Mitochondrial DNA barcode: A total of 656 base pair 

(bp) of COI for fish species and 679 bp of COI for 

invertebrates were obtained after deletion of low-

quality nucleotides at the 5’ and 3’ ends. Six different 

sequences were obtained from COI of fishes (PSC01, 

PSC02, PSC03, PSC04, PSC05, and PSC06) and one 

sequence for invertebrate (PSC07). After blasting, in 

NCBI, following our criterion of >94% sequence 

similarities, 7 prey species belong to five families 

were Cichla ocellaris, Pristolepis fasciata, 
Parambassis ranga, Rasbora trilineata, Cyprinus 
carpio and Cyclocheilichthys enoplos (Table 2). The 
percentage of each prey species identified (% N0) 

using DNA barcode were also recorded with high 

value of 15.2% in P. fasciata.  
 

Discussions 

The introduction of peacock bass into Telabak Lake 

was accompanied by a sharp and gradual decline of 

small-sized fishes (personal communication). This 

study showed that the decrease in fish diversity might 

be associated with feeding habit of peacock bass in the 

Lake, since the observed prey items in the peacock 

bass stomach confirm its piscivorous feeding habit on 

targeted native prey species. We used traditional 

visual identification method and further DNA 

barcoding technique to identify its preys. The highest 

vacuity coefficient was observed in December 

indicating their breeding and spawning season 

(Gomiero et al., 2009) which limits their hunting time. 

High vacuity coefficient during breeding season was 

also reported from other fish species such as Diplodus 
vulgaris (Pallaoro et al., 2006), Caranx rhonchus (Sley 
et al., 2008), Pagellus erythrinus (Šantić et al., 2011). 

Table 2. BLAST sequence match showing percentage identity of prey in peacock bass using barcode. 

 

Sequence Family Species Accession No. % Identity % N0 

PSC01 Cichlidae Cichla ocellaris KU878410 99.20 5.1 

PSC02 Pristolepididae Pristolepis fasciata MK049486 99.07 15.2 

PSC03 Ambassidae Parambassis ranga MK448145 94.87 10.1 

PSC04 Cyprinidae Rasbora trilineata  KU569018 99.99 2.5 

PSC05  Cyprinus carpio LN591958 94.03 2.5 

PSC06  Cyclocheilichthys enoplos KU692459 99.68 7.6 

PSC07 Palaemonidae Macrobrachium lanchesteri KP759429 98.18 5.1 

% N0 = species percentage number identified after barcoding  

Figure 2. Visual identification of 135 peacock bass stomach content from October 2018 to January 2019 captured in Telabak Lake, (A) 51.8% 

Empty stomach, (B) 43.1% unidentified fish species and (C) 5.1% unidentified invertebrate species. 



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Khaleel et al./ Invasive peacock bass prey identification in Malaysia 

The lowest vacuity coefficient observed in January 

(26.3%) revealed its feeding initiation after breeding 

period. Full recovery to feeding activity helps fishes 

to compensate the energy used during breeding 

(Derbal et al., 2007). Fish dominates the entire diet of 

the peacock bass in all months, except in December 

where invertebrates (prawn) were dominated. 

Macrobrachium lanchesteri (Prawn) spawns 
throughout the year with a peak at November (Phone 

et al., 2005). Therefore, it could be more available in 

December for peacock bass. Another explanation for 

high predation of peacock bass on fish prey species 

might be related to naturally clear transparency of 

Telabak Lake. It is reported that peacock bass thrive 

well in clear freshwater for excellent predation 

(Kovalenko et al., 2010). 

Visual identification has failed to identify the prey 

items to the lowest species level due to the degradation 

of essential features such as fin ray shape and body 

coloration. However, only 48.2% of the ingested prey 

into fish and invertebrates were visually distinguished. 

This percentage is closer to the results of other similar 

studies (Côté et al., 2013; Dahl et al., 2017). Only few 

species were successfully identified to the lowest 

species taxonomic level using visual method similar 

to other works (Morris and Akins, 2009; Côté et al., 

2013; Moran et al., 2015; Mzaki et al., 2017; Sahtout 

et al., 2018). All identified prey species were native to 

Malaysia freshwater except for C. carpio and Cichla 
spp. Opportunistic feeding habit of Cichla spp. is one 
of the serious aspects that helped them adapt to a new 

environmental condition. The presence of Cichla spp. 
in the stomach as a prey item might be due to 

cannibalism, and as proof of its opportunistic feeding 

habit in nature. It was previously examined that 

cannibalism is more pronounced during the spawning 

periods with scarcity of alternative foods, like small 

indigenous species of fish (Junior and Gomiero, 

2010). In addition, low rates of cannibalism observed 

in this study might be due to native prey abundance 

(Carvalho et al., 2014). Once Cichla spp. is introduced 
into a lake, they prey on variety of available fish 

species, shrimps and cichlids (Pereira et al., 2015; 

Mendonça et al., 2018). All native species found in the 

stomachs are of least concern (IUCN Red List, 2012) 

but they contribute largely in aquaculture, and as a 

source of income for the local community e.g. 

M. lanchesteri is used as food by locals (Phone et al., 
2005; Aznan et al., 2017).  

The studies on introduction peacock bass have 

indicated a negative effect on local fish species (Zaret 

and Paine, 1973; Molina et al., 1996; Pinto-Coelho et 

al., 2008; Pelicice and Agostinho, 2008; Rahim et al., 
2013). Previous works of the fish population in Lake 

Redonda of Cuba from 1989 to 1990, documented that 

many local fish species have been extinct after the 

introduction of peacock bass (Molina et al., 1996). 

Recently, Menezes et al. (2012) reported that the 

introduction of peacock bass in the coastal Lakes of 

Rio Grande do Norte Brazil had reduced native fish 

abundantly with a negative impact on their diversity. 

The invasion and adaptation of peacock bass in 

Telabak Lake might likely lead to the reduction of 

native fish species. The existence of these highly 

adaptive and fast-growing piscivorous fish may cause 

severe damages to the local aquatic populations 

through competition, predation and cascade effects 

across the trophic chain. Although peacock bass 

attracts recreational anglers (Mendonça et al., 2018), 

but local people depends on native aquatic species in 

the Telabak Lake. The lake plays a significant role for 

their daily needs and incomes. As our finding, 48.2% 

of the prey items submitted for barcoding were 100% 

identified to species level. Other studies identified less 

than 70% when submitted for barcoding (Morris and 

Akins, 2009; Côté et al., 2013), which is due to species 

differences. Without using DNA barcoding technique, 

most of the prey items could have been labelled as 

partially digested unidentified prey, leading to missing 

information, misidentification and less understanding 

of invasive peacock bass impact in the lake. 

 

Conclusion 

This study provided useful information about feeding 

habits of Cichla spp. for better understanding of the 
relationship between fish species and other living 

organisms in Telabak Lake. The presence of this 

invasive species may affect the government effort on 



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Int. J. Aquat. Biol. (2020) 8(4): 272-280 

 boosting and promoting the lake as recreational and 

aquaculture centre. The technique of DNA barcoding 

has proved to be a useful tool in discovering diet of the 

Cichla spp. in the lake. The information gathered in 
this recent study is important for stakeholders and 

policy makers in considering the management of 

biodiversity of the lake in the future. 
 

Acknowledgment 

The authors would like to thank the Mr Mohamad 

Amirul Aimi Md Kamail and Mohd Hanafiah Mohd 

Jayapal for helping in fish sampling. This study is 

funded by Fundamental Research Grant Scheme 

(FRGS/1/2018 /WAB13/UNISZA/02/2) awarded to 

Dr. Ahmad Syazni Kamarudin by the Ministry of 

Higher Education, Malaysia. 

 
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