1 EDITORIAL Liquid Biopsy: Opportunities and Expectations Rizwan Hashim Introduction Tumors have an abnormal rate of cell growth and cell division. Tumor cells release circulating tumor DNA (ctDNA), cell free DNA (cfDNA), mRNA and 1 microRNA, in the blood and body fluids which are 2 the by-product of tumor cell lysis. Both ctDNA and cfDNA provide valuable information regarding the cancer related mutations, genetic aberrations and 3 presence of cell free Nucleic acid (cfNA). The ctDNA provides information about the primary tumor and its secondaries / metastases. It is these ctDNA that anchor into novel locations and start dividing to 2 develop secondaries of the tumours. Tumor biopsy is an invasive procedure in which tissue is excised from a growth and examined under a microscope. However, “Liquid Biopsy” is a relatively newer technique to find and evaluate cancer cells or their products in blood and body fluids that circulate after tumor cell lysis. Historical Aspect for the Use of Liquid Biopsy: The basis of liquid biopsy was the observation made 4 by Ashworth in 1869, where the circulating tumor cells were detected in a patient with tumor secondaries. The metastatic sites also shed tumor cells in the blood stream that could be detected and analyzed. It was after a long gap when scientists realized that the cell free DNA (cf DNA) could be detected, analyzed, and quantified. It was in 1948 when cell free DNA and free RNA was first detected 5 and quantified. This was done both in healthy individuals and those who had cancer. Progressing forward, it was in 1966 the researchers detected large volumes of cell free DNA in patients who had lupus. By 1980 the cell free DNA was also detected among oncology patients. In 1994 the scientists started detecting specific mutations from the cell free DNA present in the blood of oncology patients ® and by 2000 Veridex introduced CELL SEARCH CTC test, for liquid biopsy assay as a first commercially available test for liquid biopsy, however CAPP Seq: cancer Personalized profiling by deep sequencing is another method for quantifying ctDNA analysis that 6 ® is being used. The Cobas EGFR was the first liquid biopsy test that was approved by FDA in 2016. This test was for EGFR gene mutation to be detected in 7 blood drawn from cancer patients. Nowadays, ctDNA and cfDNA can be analyzed commercially by Mag Max Cell Free DNA Isolation kits and Cell Free Nucleic Acid Isolation Kits used for liquid biopsy 1 specimens. Applications and Advantages of the Liquid Biopsy Technique: When blood/body fluids are drawn as liquid biopsy for ctDNA and cfDNA, they also contain membrane 8, 9 bound lipid globules called Exosomes. They contain tumor proteins, lipids, DNA fragments and micro RNA. The tumor related material in the exosomes can be analyzed to provide information about the mechanism involved in signals between the tumor cells, especially between primary tumors and metastatic sites. This is one of the many novel features of liquid biopsy and is not achieved by conventional tissue biopsy. Liquid biopsy provides a window of opportunity to understand tumor cell signaling that can be manipulated by various treatment modalities for cancer management. As cancer is a complex problem with systemic effects, liquid biopsy with frequent sampling provides a unique chance for mutation characterization and 10,11,12,13 exosomal analysis. Together, these analytes have the strength to give the details of the tumors genetics, its metastasis and 14,15 various stages of tumor progression. The information provided is used for: genomics, e p i ge n o m i c s , t ra n s c r i p to m i c s , p ro te o m i c s , metabolomics and information regarding minimal 16 residual disease. The major oncology domains where liquid biopsies have been successfully used 17 are: colorectal, breast and lung cancers, mainly to predict therapy responses and to monitor the Correspondence: Prof. Dr. Rizwan Hashim Fazaia Medical College, Air University Islamabad E-mail: riznajmi20011@hotmail.com Received: July 16, 2020; Accepted: November 11, 2020 Department of Pathology Fazaia Medical College, Air University Islamabad Acknowledgement 1. No conflict of interest is declared. 2. No financial assistant or grant was provided. 3. No endorsement of any device / Kit / manufacturer or technology is implied. REFERENCES 1. Schwarzenbach H, Hoon DSB and Pantel K. Cell-free nucleic acids as biomarkers in cancer patients. Nat Rev Cancer 2011; 11: 426–437. 2. Haber DA and Velculescu VE. Blood-based analyses of cancer: circulating tumor cells and circulating tumor DNA. Cancer Discov 2014; 4: 650–661. 3. Diehl F, Li M, Dressman D, et al. Detection and quantification of muta- tions in the plasma of patients with colorectal tumors. Proc Natl Acad Sci USA 2005; 102: 16368–16373. 4. Ashworth TR. A case of cancer in which cells similar to those in the tumors were seen in the blood after death. Aust Med J 1869; 14: 146–149. 5. Dominguez-Vigil IG, Moreno-Martinez AK, Wang JY, et al. The dawn of the liquid biopsy in the fight against cancer. Oncotarget 2018; 9: 2912–2922. 6. Newman AM, Bratman SV, To J, et al. An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage. Nat Med 2014; 20: 548–554. 7. Malapelle U, Sirera R, Jantus-Lewintre E, et al. Profile of the Roche cobasVR EGFR mutation test v2 for non-small cell lung cancer. Expert Rev Mol Diagn 2017; 17: 209–215. 8. Wan JCM, Massie C, Garcia-Corbacho J, et al. Liquid biopsies come of age: towards implementation of circulating tumour DNA. Nat Rev Cancer2017; 17: 223–238. 9. Zhang W, Xia W, Lv Z, Ni C, Xin Y, Yang L. Liquid biopsy for cancer: circulating tumor cells, circulating free DNA or exosomes? Cell Physiol Biochem. 2017 May 1;41(2):755–68. 10. Konig L, Kasimir-Bauer S, Bittner AK, et al. Elevated levels of extracellular vesicles are associated with therapy failure and disease progression in breast cancer patients undergoing neoadjuvant chemotherapy. Oncoimmunology 2017; 7: e1376153. 11. Sadovska L, Eglitis J and Line A. Extracellular vesicles as biomarkers and therapeutic targets in breast cancer. Anticancer Res 2015; 35: 6379–6390. 12. Valadi H, Ekstro€m K, Bossios A, et al. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol 2007; 9: 654–659. 13. Bettegowda C, Sausen M, Leary RJ, et al. Detection of circulating tumor DNA in early and late stage human patients for relapse. The developed assays are 18,19 sensitive to detect these organ related mutations. Among other promising capabilities of liquid biopsy are the analysis of heterogeneity of tumor genetics, detection of very early treatment related resistance, detection of residual disease affecting prognosis, 17, 20, 21, 22 recurrence and follow up. Among the common applications for use of liquid biopsy technique is, early detection of cancer related DNA. This would help to plan the treatment, to review how well the patient is responding to treatment and to detect the recurrence of cancer. As liquid biopsy usually involves detection of cancer cells/DNA by drawing of blood, the same can be done multiple times. This helps the oncologists to monitor the molecular changes taking place in the tumor 23 during treatment. Liquid biopsies also provide a method to trace the tumor genetic variations sequentially that is not possible by using traditional 22 tissue biopsy. Hence, liquid biopsy provides a non-invasive 25 substitute for traditional tissue biopsies and has become a popular field, with features for improved diagnoses for oncology and other types of diseases like Down Syndrome screening and detection of fetal 2, 25, 26 DNA in maternal circulation. Recently, liquid biopsy has made a place in Precision Medicine that manages patient with targeted therapies with 27 improved detection of various genetic aberrations. Limitations of Liquid Biopsy Technique: Despite many advantages there remain many 28, 29 30, 31 challenges; from timing of sample, collection 32, 33, 34 with relation to the stage of disease adequate volume of sample collected, proper storage of sample, DNA isolation, sequencing and detection of relevant mutation, careful analysis with clinical 35 validation of mutation analysis procedures. Summary and Conclusion: It appears that the future of liquid biopsy is an ambitious endeavor and entails technological advancements but this procedure is gaining worldwide acceptance for early cancer detection, genetic evolution and monitoring of treatment 36 resistance. Moreover, with quantum leaps in technology and computation of data we can achieve much with the use of liquid biopsy and also save many precious lives through early revelation and 37, 38, 39, 40 analysis. 2 JIIMC 2021 Vol. 16, No.1 27. Abbosh C, Birkbak NJ, Wilson GA, et al. Phylogenetic ctDNA analysis depicts early stage lung cancer evolution. Nature 2017; 545: 446–451. 28. Mandel P and Metais P. Les acides nucle´ iques du plasma sanguin chez l'homme. C R Seances Soc Biol Fil 1948; 142: 241–243. 29. Kammesheidt A, Tonozzi TR, Lim SW, et al. Mutation detection using plasma circulating tumor DNA (ctDNA) in a cohort of asymptomatic adults at increased risk for cancer. Int J Mol Epidemiol Genet 2018; 9: 1–12. 30. Aravanis AM, Lee M and Klausner RD. Next-generation sequencing of circulating tumor DNA for early cancer detection. Cell 2017; 168: 571–574. 31. Lv Q, Gong L, Zhang T, et al. Prognostic value of circulating tumor cells in metastatic breast cancer: a systemic review and meta-analysis. Clin Transl Oncol 2016; 18: 322–330. 32. Mitchell PS, Parkin RK, Kroh EM, et al. Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci USA 2008; 105: 10513–10518. 33. Gerlinger M, Rowan AJ, Horswell S, et al. Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N Engl J Med 2012; 366: 883–892. 34. de Bruin EC, McGranahan N, Mitter R, et al. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science 2014; 346: 251–256. 35. Torga G and Pienta KJ. Patient-paired sample congruence between 2 commercial liquid biopsy tests. JAMA Oncol 2018; 4: 868. 36. Vansant G, Wang Y, Hom B, et al. Analysis of circulating tumor cells (CTCs) in patients across multiple metastatic breast cancer (mBCa) cohorts identifies marked inter and intra patient heterogeneity in CTC size, shape, and overall morphology. J Clin Oncol 2018; 36: 1084. 37. Cuzick J, Thorat MA, Andriole G, et al. Prevention and early detection of prostate cancer. Lancet Oncol 2014; 15: e484–e492. 38. Cohen JD, Li L, Wang Y, et al. Detection and localization of surgically resectable cancers with a multi analyte blood test. Science 2018; 359: 926–930. 39. Strickler JH, Loree JM, Ahronian LG, et al. Genomic landscape of cell free DNA in patients with colorectal cancer. Cancer Discov 2018; 8: 164–173. 40. Shain AH, Yeh I, Kovalyshyn I, et al. The genetic evolution of melanoma from precursor lesions. N Engl J Med 2015; 373: 1926–1936. malignancies. Sci Transl Med 2014; 6: 224ra24. 14. Dittamore R, Wang Y, Daignault-Newton S, et al. Phenotypic and genomic characterization of CTCs as a biomarker for prediction of Veliparib therapy benefit in mCRPC. J Clin Oncol 2018; 36: 5012. 15. Scher HI, Jendrisak A, Graf R, et al. CTC phenotype classifier to identify mCRPC patients with high genomic instability CTCs and to predict failure of androgen receptor signaling (AR Tx) and taxane (T) systemic therapies. J Clin Oncol 2016; 34: 5044. 16. Pantel K, Alix-Panabières C. Liquid biopsy and minimal residual disease — latest advances and implications for cure. Nat Rev Clin Oncol. 2019 Jul 1;16(7):409–24. 17. Garcia-Murillas I, Schiavon G, Weigelt B, et al. Mutation tracking in circulating tumor DNA predicts relapse in early breast cancer. Sci Transl Med 2015; 7: 302ra133–302ra133. 18. Diehl F, Li M, Dressman D, et al. Detection and quantification of mutations in the plasma of patients with colorectal tumors. Proc Natl Acad Sci USA 2005; 102: 16368–16373. 19. Elazezy M, Joosse SA. Techniques of using circulating tumor DNA as a liquid biopsy component in cancer management. Comput Struct Biotechnol J. 2018 Jan 1;16:370–8. 20. Beaver JA, Jelovac D, Balukrishna S, et al. Detection of cancer DNA in plasma of patients with early stage breast cancer. Clin Cancer Res 2014; 20: 2643–2650. 21. Olsson E, Winter C, George A, et al. Serial monitoring of circulating tumor DNA in patients with primary breast cancer for detection of occult metastatic disease. EMBO Mol Med 2015; 7: 1034–1047. 22. Shaw JA, Page K, Blighe K, et al. Genomic analysis of circulating cell-free DNA infers breast cancer dormancy. Genome Res 2012; 22: 220–231. 23. Siravegna G, Marsoni S, Siena S, et al. Integrating liquid biopsies into the management of cancer. Nat Rev Clin Oncol 2017; 14: 531–548. 24. Schrock AB, Pavlick D, Klempner SJ, et al. Hybrid capture based genomic profiling of circulating tumor DNA from patients with advanced cancers of the gastrointestinal tract or anus. Clin Cancer Res 2018; 24: 1881–1890. 25. Gray KJ and Wilkins-Haug LE. Have we done our last amniocentesis? Updates on cell free DNA for Down syndrome screening. Pediatr Radiol 2018; 48: 461–470. 26. Fan HC, Blumenfeld YJ, Chitkara U, et al. Analysis of the size distributions of fetal and maternal cell free DNA by paired end sequencing. Clin Chem 2010; 56: 1279–1286. JIIMC 2021 Vol. 16, No.1 3