1.MI-Dessy Natalia


Available online at
http://jurnal.permi.or.id/index.php/mionline

DOI: 10.5454/mi.10.4.1ISSN 1978-3477, eISSN 2087-8575
Vol 10, No 4, December 2016, p 119-124

*Corresponding author; Phone: +62-22-2502103, 
Email:dessy@chem.itb.ac.id 

Hepatitis B virus infection can cause a chronic liver 

disease. It is estimated that 240 million people are 

chronically infected with hepatitis B and more than 786 

000 people die every year due to complication of 

hepatitis B, including cirrhosis and liver cancer (World 

Health Organization c2015). In Indonesia, there are 

about 28 million people infected with hepatitis B and 

14 million people are potentially becoming chronic 

with 10% progress into hepatocellular carcinoma 

(Kementerian Kesehatan Republik Indonesia 2013).

The most effective approach to control and prevent 

the spreading of hepatitis B is by vaccination (WHO 

2010). In Indonesia, hepatitis B vaccine has been 

integrated into national immunization programmes 

since 1997 (Kementerian Kesehatan Republik Indonesia 

2013). Therefore,  in order to fulfill the need of hepatitis 

B antigen, here we report the production of local 

recombinant small hepatitis B surface antigen (sHBsAg) 

using Hansenula polymorpha expression system. 

H. polymorpha expression system offers more 

advantages than non-methylotrophic yeast expression 

system, such as Saccharomyces cerevisiae. H. 

polymorpha expression system has a strong and 

tightly-regulated alcohol oxidase (AOX) inducible 

promoter, and a high-frequency of non-homologous 

recombination (Kang and Gelissen 2005). Moreover, 

H. polymorpha does not hyperglycosylate protein, is 

able to grow in simple medium, and has thermotolerant 

property (Kang and Gelissen 2005; Reinders et al. 

1999).

Recombinant small hepatitis B surface antigen (sHBsAg) is used as a vaccine component to prevent hepatitis 
B virus infection. As an attempt to produce local recombinant sHBsAg, a PCR-amplified DNA fragment 
encoding Indonesia sHBsAg which belongs to B genotype and adw2 subtype was cloned into Hansenula 
polymorpha expression vector pHIPX4 by using recombination method. The resulted pHIPX4-sHBsAg was 
integrated into the alcohol oxidase locus of H. polymorpha NCYC495 genome and the sHBsAg expression was 
regulated under the control of H. polymorpha AOX promoter. H. polymorpha NCYC495 carrying the sHBsAg 
coding sequence was grown in mineral medium and methanol 0.5% (v/v) was added to induce the expression of 
recombinant sHBsAg. The expression of sHBsAg was detected by HBsAg diagnostic kit test, ELISA, and 
Western blot analysis.

Key words: AOX promoter, Hansenula polymorpha, hepatitis B, sHBsAg

Antigen permukaan virus hepatitis B berukuran kecil (sHBsAg) rekombinan digunakan sebagai komponen 
vaksin untuk mencegah infeksi virus hepatitis B. Sebagai upaya untuk memproduksi sHBsAg rekombinan lokal, 
fragmen DNA amplifikasi PCR yang mengkode sHBsAg Indonesia yang tergolong ke dalam genotipe B dan 
subtipe adw2 diklon ke dalam vektor ekspresi Hansenula polymorpha pHIPX4 dengan menggunakan metode 
rekombinasi. Plasmid rekombinan pHIPX4-sHBsAg terintegrasi ke dalam lokus alkohol oksidase (AOX) dari 
genom H. polymorpha NCYC495 dan ekspresi sHBsAg diregulasi di bawah kendali promotor AOX H. 
polymorpha. H. polymorpha NCYC495 yang membawa urutan kode sHBsAg ditumbuhkan di dalam medium 
mineral dan metanol 0,5% (v/v) ditambahkan untuk menginduksi ekspresi sHBsAg rekombinan. Ekspresi 
sHBsAg dideteksi melalui uji kit diagnostik HBsAg, ELISA, dan Western blot.

Kata kunci: promotor AOX, Hansenula polymorpha, hepatitis B, sHBsAg 

Cloning and Expression of Small Hepatitis B Surface 
Antigen (sHBsAg) In Hansenula polymorpha

1 1 1
CHRISTIAN HERYAKUSUMA , FERNITA PUSPASARI , IHSANAWATI , ERNAWATI ARIFIN 

2,3 3 4
GIRI-RACHMAN , MARSELINA IRASONIA TAN , EKAPUTRA RAMADHANI , 

4 1,3
NENI NURAINY , AND DESSY NATALIA *

1
Biochemistry Research Group, Faculty of Mathematics and Natural Sciences, 

Institut Teknologi Bandung, Bandung 40132, Indonesia;
2
Genetics and Molecular Biotechnology Research Group, School of Life Sciences 

and Technology, Institut Teknologi Bandung, Bandung 40132, Indonesia;
3
Physiology, Animal Development, and Biomedical Sciences Research Group, 

4
School of Life Sciences and Technology, Institut Teknologi Bandung, Bandung 40132, Indonesia;

5
PT Bio Farma (Persero), Bandung 40161, Indonesia



This paper described cloning of sHBsAg coding 

sequence into H. polymorpha expression vector 

pHIPX4 and expression of the sHBsAg in H. 

polymorpha NCYC495. The sHBsAg expression was 

analysed with HBsAg diagnostic kit test, ELISA, and 

Western blot. 

MATERIALS AND METHODS

Construction of  pHIPX4-sHBsAg. The 

sHBsAg coding sequence of hepatitis B virus was 

amplified by PCR method using pPICZα-A-HBsAg 

(Nurfitriani 2012) as a template and a set of primers SF 

(CTAAAGTACAAAAACAAGCTTATGGAGAAC

ACGCATCAGG) and SR (GATCGATCCTCTAGAG

TCGACTTAAATGTATACCCAAAGAC). The 

amplified sHBsAg DNA fragment and pHIPX4 

previously digested with HindIII/SalI were 
®

homologously recombined according to CloneEZ  

PCR Cloning Kit procedure (GenScript, USA). The 

resulted recombinant plasmid was designated as 

pHIPX4-sHBsAg. The nucleotide sequence of 

sHBsAg in pHIPX4-sHBsAg was determined by 

dideoxy-chain termination method (Macrogen, 

Korea). 

Transformation of H. polymorpha NCYC495 

and Recombinant sHBsAg Expression. H. 

polymorpha NCYC495 leu1.1 was transformed with 

recombinant plasmid pHIPX4-sHBsAg, which had 

been linearized with ScaI, according to the method 

described by Faber et al. (Faber et al. 1994). H. 

polymorpha NCYC495 transformants were grown on 

YND medium, which composed of 0.67% (w/v) yeast 

nitrogen base without amino acids, 1% (w/v) 

dextrose, and 1.6% (w/v) bacto agar. PCR colony was  

performed using primers SF (CTAAAGTACAAAAA

CAAGCTTATGGAGAACACGCATCAGG) and SR 

(GATCGATCC TCTAGAGTCGACTTAAATGTATA

CCCAAGAC) to verify plasmid integration into the H. 

polymorpha NCYC495 genome. 

The transformants were precultured in 5 mL 

mineral medium (van Dijken et al. 1976) containing 

0.25% (w/v) glucose and incubated with shaking at 200 

rpm for 18 h at 37 °C. The culture was then centrifuged 

at 2,900 g and the whole pellet cell were inoculated in 

50 mL fresh mineral medium containing 0.5% (v/v) 

methanol as the sole carbon source. The culture was 

incubated with shaking at 200 rpm, 37 °C. To induce 

recombinant sHBsAg expression, 0.5% (v/v) methanol 

was added to the culture medium every 22 h for 66 h.

The yeast cells were harvested by centrifugation at 

120   HERYAKUSUMA  ET AL. Microbiol Indones

2900 g, 4 °C, and the cell pellet was resuspended in 

lysis buffer which contained 10 mM potassium 

phosphate pH 8, 500 mM NaCl, 5 mM EDTA, 8% (v/v) 

glycerol, 1% (v/v) Triton X-100, and 1% (v/v) 
-1

leupeptin 2.5 μg mL . g, The cells were lysed by 

manual grinding in liquid nitrogen. The protein was 

collected by centrifugation at 7200 g, 4 °C for 10 min.

HBsAg Diagnostic Kit Test. Recombinant 

sHBsAg was analysed with HBsAg diagnostic kit test, 

Uji Hepatitis BsAg (Pakar Biomedika Indonesia, 

Indonesia). The test was conducted using 50 μL protein 

samples. 

ELISA. Recombinant sHBsAg was examined with 

commercial ELISA kit, Murex HBsAg Version 3 

(DiaSorin, Italy). ELISA was performed using 1 μg 

protein samples and 75 μL of ELISA negative and 

positive control. All protein samples and controls were 

analysed in duplicate. 

The negative and positive controls were provided 

by the kit manufacturer. The negative control was a 

normal human serum diluted in a buffer containing 

protein of bovine origin and 0.05% (w/v) Bronidox® 

preservative, while the positive control was an 

inactivated human serum diluted in a buffer containing 

protein of bovine origin and 0.05% (w/v) Bronidox® 

preservative. The ELISA threshold value was 

calculated according to the instruction of ELISA kit 

manufacturer by adding a value of 0.050 to the A  of 450
negative control provided in the ELISA kit.

Western Blot. 10 μg protein samples were first 

separated on a 12% SDS-polyacrylamide gel 

electrophoresis. The proteins were then transferred 

onto nitrocellulose membrane and then blocked with 

Roti Block (Carl Roth, Germany) for 2 h at room 

temperature. 

The sHBsAg protein was detected using 

monoclonal anti-HBsAg (Virostat, USA), goat anti-

mouse antibody-alkaline phosphatase conjugate 

(Biorad, USA), and visualized with NBT/BCIP. 

Purified recombinant sHBsAg, produced in-house by 

PT. Bio Farma (Persero), was used as a positive 

control. 

RESULTS

Integration of Linearized pHIPX4-sHBsAg into 

H. polymorpha NCYC495 Genome. The sHBsAg 

coding sequence was subcloned into H. polymorpha 

expression vector pHIPX4 which has Saccharomyces 

cerevisiae LEU2 gene under its endogenous promoter. 

The resulted recombinant plasmid pHIPX4-sHBsAg 



(Fig 1) was verified by restriction enzyme analysis 

using HindIII and SalI (Fig 2A). The digested pHIPX4-

sHBsAg gave two DNA fragments with the size of 7.0 

kb and 0.7 kb which represented the pHIPX4 vector 

and sHBsAg insert, respectively. The recombinant 

plasmid pHIPX4-sHBsAg was linearized in the 

promoter AOX region to allow its integration in the 

AOX locus of H. polymorpha NCYC495 genome 

which enabled the transformants to grow on minimal 

medium without leucine. PCR colony of H. 

polymorpha NCYC495 transformants gave a 0.7 kb 

DNA fragment which confirmed the presence of 

sHBsAg coding sequence in the H. polymorpha 

NCYC495 genome (Fig 2B).

Identification of Recombinant sHBsAg. Crude 

protein extracts from two H. polymorpha NCYC495 

transformants (designated as S1 and S2) were 

evaluated using commercial HBsAg diagnostic kit. 

The S1 and S2 crude protein extracts gave positive 

interaction with HBsAg antibody, whereas the 

interaction was negative for crude protein extract from 

H. polymorpha NCYC495 (Table 1). This result 

indicated that crude protein extracts of S1 and S2 

contained recombinant sHBsAg.

Further identification of the expression of 

recombinant sHBsAg in S1 and S2 was conducted 

using ELISA. The crude protein extracts from S1 and 

S2 gave the value of A  that was higher than ELISA 450
threshold value (Fig 3A). In contrast, the crude protein 

extract from H. polymorpha NCYC495 had lower A  450
value than that of the threshold value (Fig 3A). This 

ELISA result suggested the presence of recombinant 

sHBsAg in S1 and S2.

Western blot analysis was performed to demonstrate 

Volume 10, 2016 Microbiol Indones     121

1 2 3bp

8000
6000

750

A

1 2 3bp

750

B

Fig 1 pHIPX4-sHBsAg recombinant plasmid. The plasmid map was generated using SnapGene® Viewer 3.0.1.

Fig 2 Restriction enzyme analysis of pHIPX4-sHBsAg recombinant plasmid with its uncut control (A) and colony PCR of H. 
polymorpha NCYC495-pHIPX4-sHBsAg (B). (A) Lane 1, DNA ladder; 2, pHIPX4-sHBsAg digested with HindIII and 
SalI; 3, uncut pHIPX4-sHBsAg. (B) Lane 1, DNA ladder; 2-3, positive transformant. 



Microbiol Indones122   HERYAKUSUMA  ET AL.

subtype. To determine the immunogenicity of “a” 

determinant of recombinant sHBsAg, the sHBsAg 

sequence in the research was also examined for 

possibility of immune-escape mutant. The immune-

escape mutant of HBV was known to have some rare 

substitution in amino acids residues in the “a” 

determinant region, such as G145R (Purdy et al. 2007), 

Q129R, and G145A (Koyanagi et al. 2000). 

Interestingly, one study also found a rare amino acid 

substitution Y161S located outside the “a” determinant 

region was an immune-escape mutant (Jinata et al. 

2012). Based on multiple amino acid sequence 

alignment in the “a” determinant region of sHBsAg, 

the sequence used in this research was not identified as 

an immune-escape mutant (Fig 4). 

The recombinant plasmid pHIPX4-sHBsAg was 

linearized in the AOX promoter region to facilitate its 

integration in the AOX locus of H. polymorpha 

NCYC495 (Saraya et al. 2012). Several papers have 

reported that the integration of sHBsAg in the H. 

polymorpha genome by the use of autonomously 

replicating sequence (HARS1) allowed higher 

integration frequency (Diminsky et al. 1997; Heijtink 

the expression of sHBsAg in H. polymorpha NCYC495 

pHIPX4-sHBsAg. A protein band at molecular weight 

of 19.8 kDa appeared in the crude protein extracts from 

S1 and S2, as well as in the purified sHBsAg (Fig 3B). 

As expected, there was no protein band detected in the 

H. polymorpha NCYC495 crude protein. Taken 

together, this result confirmed that S1 and S2 produced 

recombinant sHBsAg.

The negative control of ELISA is a normal human 

serum, while the positive control is an inactivated 

human serum. The positive control of Western blot is 

purified recombinant sHBsAg from PT. Bio Farma 

(Persero).

DISCUSSION

The Indonesia sHBsAg sequence used in this work 

was derived from local clinical isolates of Hasan 

Sadikin Hospital Bandung in which the virus has  B 

genotype and adw2 subtype (Suhandono et al. 2007). 

Amino acid sequence alignment of the “a” determinant 

region of several sHBsAgs showed some amino acid 

variations due to differences in virus genotype and 

Sample NCYC495

 

S1
 

S2
 

Interaction – + +

  
3.20

2.80

2.40

2.00

1.60

A
4
5
0

0.40

0.00
NCYC495 S1 S2 + -

19.80 kDa

NCYC
495

S1 S2 +

B

A
Theshold

0.301.903.120.23 3.06

Table 1. HBsAg diagnostic kit test of crude protein extracts  

Fig 3 ELISA (A) and Western blot analysis (B) of crude protein extracts from H. polymorpha NCYC495-pHIPX4-sHBsAg (S1 
and S2) and H. polymorpha NCYC495. All ELISA value bar represent an average value of two repeated assay.



Volume 10, 2016 Microbiol Indones     123

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Sulphate-Protein Complexes. Biochem J. 153(2):191-
197. doi:10.1042/bj1530191.

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Highly-efficient electrotransformation of the yeast 
Hansenula polymorpha. Curr Genet. 25(4): 305-310. 
doi:10.1007/BF00351482.

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Bairoch A. 2003. ExPASy: the proteomics server for in-
depth protein knowledge and analysis. Nucleic Acids 
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Osterhaus ADME. 2002. Hepatitis B Surface Antigen 
(HBsAg) Derived from Yeast Cells (Hansenula 
polymorpha) Used to Establish an Influence of 
Antigenic Subtype (adw2, adr, ayw3) in Measuring the 
Immune Response After Vaccination. Vaccine. 20(17-
18):2191-2196. doi:10.1016/S0264-410X(02)00145-7.

Jinata C, Giri-Rachman EA, Retnoningrum DS. 2012. 
Molecular Analysis of Immune-Escape Mutants of 
Hepatitis B Virus from Local Clinical Samples. 
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Kang HA, Gellissen G. 2005. Hansenula polymorpha. In: 
Gelissen G, editor. Production of Recombinant 
Proteins: Novel Microbial and Eukaryotic Expression 
Systems. Weinheim (DE): WILEY-VCH Verlag GmbH 
& Co. KGaA. p. 111-142. 

Kementerian Kesehatan Republik Indonesia. c2013. Jakarta 
(ID): Pusat Data dan Informasi Kementerian Kesehatan 
RI; [accessed 2015 Feb 15, 2016 Jan 12]. 
http://www.depkes.go.id/folder/view/01/structure-pub
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Iwamoto H, Kumazawa T, Mukaide M, Nawata H, 
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129 145
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Gene. Med Sci Monit. 6(6):1165-1169.

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pPICZα-A-HBsAg for Expression of Hepatitis B 
Surface Antigen (HBsAg) Extracellular in Pichia 
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Ottone S, Nguyen X, Bazin J, Berard C, Jimenez S, 
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et al. 2002; Bian et al. 2009).

The expression of sHBsAg in H. polymorpha 

NCYC495 transformants (S1 and S2) has been verified 

by diagnostic kit test and ELISA. Further analysis 

using Western blot showed that the recombinant 

sHBsAg appeared as a protein band at 19.8 kDa, which 

is similar with the purified sHBsAg used as a control 

(Fig 3B). The predicted molecular weight of sHBsAg 

calculated using ExPASy (Gasteiger et al. 2003) was 

25.3 kDa. This molecular weight difference could be 

due to incomplete reduction of disulfide bonds in 

recombinant sHBsAg (Ottone et al. 2007). The 

presence of disulfide bonds will introduce a more 

compact shape of the proteins (Dunker and Kenyon 

1976), hence faster migration rates of recombinant 

sHBsAg would be expected (Rath et al. 2009). Taken 

together, the H. polymorpha  capable of expressing 

Indonesian sHBsAg developed in this work is an 

alternative source of recombinant HBsAg vaccine 

production.

ACKNOWLEDGMENT

We thank Ida Van der Klei from University of 

Groningen for providing Hansenula polymorpha strain 

and expression vector. This research was partially 

funded by Ministry of Research, Technology and 

Higher Education for the National Hepatitis B 

Consortium.

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Fig 4 Multiple amino acid sequence alignment in the “a” determinant region of sHBsAg.



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