# bib

id: cord-263094-5zbzm1b0
author: Dane, Hannah
title: Detection of influenza D virus in bovine respiratory disease samples, UK
date: 2019-07-07
extension: .txt
mime: text/plain
words: 778
sentence: 27
flesch: 42
cache: cache/cord-263094-5zbzm1b0.txt
txt: txt/cord-263094-5zbzm1b0.txt
summary:
  Ken Lemon https://orcid.org/0000-0001-9844-1573 Cocirculation of two distinct genetic and antigenic lineages of proposed influenza D virus in cattle Influenza d virus in cattle Influenza D virus infection in Mississippi Beef Cattle Influenza D virus in cattle Characterization of a novel influenza virus strain in cattle and swine: proposal for a new genus in the Orthomyxoviridae family Isolation of a novel swine influenza virus from Oklahoma in 2011 which is distantly related to human influenza C viruses Trends in mortality ratios among cattle in US feedlots Serological evidence for high prevalence of Influenza D Viruses in Cattle Metagenomic characterization of the virome associated with bovine respiratory disease in feedlot cattle identified novel viruses and suggests an etiologic role for influenza D virus A metagenomics and case-control study to identify viruses associated with bovine respiratory disease Pathogenesis, host innate immune response and aerosol transmission of Influenza D virus in cattle Bovine respiratory disease in feedlot cattle: Phenotypic, environmental, and genetic correlations with growth, carcass, and longissimus muscle palatability traits Influenza D virus in animal species in Guangdong province, Southern China key: cord-263094-5zbzm1b0 authors: Dane, Hannah; Duffy, Catherine; Guelbenzu, Maria; Hause, Ben; Fee, Sean; Forster, Fiona; McMenamy, Michael J.; Lemon, Ken title: Detection of influenza D virus in bovine respiratory disease samples, UK date: 2019-07-07 journal:


id: cord-316617-8cqxz3wi
author: Ward, Michael P.
title: SARS‐CoV‐2, where to now?
date: 2020-06-19
extension: .txt
mime: text/plain
words: 1240
sentence: 45
flesch: 36
cache: cache/cord-316617-8cqxz3wi.txt
txt: txt/cord-316617-8cqxz3wi.txt
summary:
  Supporting pandemic response using genomics and bioinformatics: A case study on the emergent SARS-CoV-2 outbreak Preparedness for emerging infectious diseases: Pathways from anticipation to action Serological survey of SARS-CoV-2 for experimental, domestic, companion and wild animals excludes intermediate hosts of 35 different species of animals Recent progress on the diagnosis of 2019 Novel Coronavirus Cats under the shadow of the SARS-CoV-2 pandemic Explanation for COVID-19 infection neurological damage and reactivations High COVID-19 virus replication rates, the creation of antigen-antibody immune complexes, and indirect hemagglutination resulting in thrombosis One health surveillance: More than a buzz word? The COVID-19 pandemic could be a catalyst for such a seismic shift in how we approach emerging infectious diseases and One Health.


id: cord-280328-16fpiuc2
author: Villanueva‐Cabezas, JP
title: One Health needs a vision beyond zoonoses
date: 2020-08-12
extension: .txt
mime: text/plain
words: 1296
sentence: 45
flesch: 37
cache: cache/cord-280328-16fpiuc2.txt
txt: txt/cord-280328-16fpiuc2.txt
summary:
  If wildlife trading resumes due to ASF, there is increasing negative SDGs outcomes on the environment (E  B), and increased risk of new emerging zoonoses and adverse SDG outcomes on people (B  A). The emergence of the COVID-19 pandemic is necessarily intertwined with increasing human pressures on the environment (SDGs 12, 14, 15) and climate change (SDG 13) (WHO, 2020).


id: cord-347475-ttmactz0
author: Mesquita, J. R.
title: Outbreak of Porcine Epidemic Diarrhea Virus in Portugal, 2015
date: 2015-09-07
extension: .txt
mime: text/plain
words: 1517
sentence: 53
flesch: 52
cache: cache/cord-347475-ttmactz0.txt
txt: txt/cord-347475-ttmactz0.txt
summary:
  Typical clinical symptoms of PED include watery diarrhea, vomiting, dehydration, and Porcine epidemic diarrhea virus (PEDV; family Coronaviridae, subfamily Coronavirinae, genus Alphacoronavirus) is a highly contagious virus responsible for enteric disease in swine characterized by an acute onset of symptoms including severe watery diarrhea, vomiting, dehydration, and high mortality in suckling piglets (ICTV, 2012; Song and Park, 2012) . Comparison of porcine epidemic diarrhea viruses from Germany and the United States Virus Taxonomy: Classification and Nomenclature of Viruses; Ninth Report of the International Committee on Taxonomy of Viruses Porcine epidemic diarrhoea virus: a comprehensive review of molecular epidemiology, diagnosis, and vaccines 2013:


id: cord-281081-rifr5uub
author: Deng, Junhua
date: 2020-05-07
extension: .txt
mime: text/plain
words: 1525
sentence: 60
flesch: 47
cache: cache/cord-281081-rifr5uub.txt
txt: txt/cord-281081-rifr5uub.txt
title:
  Serological survey of SARS‐CoV‐2 for experimental, domestic, companion and wild animals excludes intermediate hosts of 35 different species of animals

summary:
  After confirming the specificity, sensitivity and suitability of SARS-CoV-2 ELISA kit for different species of experimental animals, clinical serum samples from domestic livestock (pig, cow, sheep, horse), poultry (chicken, duck, goose), experimental animal (mice, rat and rhesus monkey), companion animal (dog and cat) and wild animals (camel, fox, mink, alpaca, ferret, bamboo rat, peacock, eagle, tiger rhinoceros, pangolin, leopard cat, jackal, giant panda, masked civet, porcupine, bear, yellow-throated marten, weasel, red pandas and wild boar) were used for antibody detection. One pet dog was reported to be SARS-CoV-2-positive detected by RT-PCR in Hongkong (https://www.news.gov.hk/eng/2020/02/20200 228/20200 228_093205_796.html).


id: cord-253850-e3l5xtc2
author: Wang, M.
date: 2018-01-23
extension: .txt
mime: text/plain
words: 1596
sentence: 48
flesch: 40
cache: cache/cord-253850-e3l5xtc2.txt
txt: txt/cord-253850-e3l5xtc2.txt
title:
  Detection and genetic characterization of porcine deltacoronavirus in Tibetan pigs surrounding the Qinghai–Tibet Plateau of China

summary:
  The Veterinary Record MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets Detection and phylogenetic analysis of porcine deltacoronavirus in Korean Swine Farms Complete genome characterization of Korean porcine deltacoronavirus Strain KOR/KNU14-04 Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars First report of seroprevalence of swine influenza A virus in Tibetan pigs in Tibet, China. key: cord-253850-e3l5xtc2 authors: Wang, M.; Wang, Y.; Baloch, A. R.; Pan, Y.; Tian, L.; Xu, F.; Shivaramu, S.; Chen, S.; Zeng, Q. title: Detection and genetic characterization of porcine deltacoronavirus in Tibetan pigs surrounding the Qinghai–Tibet Plateau of China date: 2018-01-23 journal:


id: cord-260212-m80dkzm4
author: Lee, J. H.
title: Detection and Phylogenetic Analysis of Porcine Deltacoronavirus in Korean Swine Farms, 2015
date: 2016-03-10
extension: .txt
mime: text/plain
words: 1830
sentence: 73
flesch: 54
cache: cache/cord-260212-m80dkzm4.txt
txt: txt/cord-260212-m80dkzm4.txt
summary:
  Pathogenicity and pathogenesis of a United States porcine deltacoronavirus cell culture isolate in 5-day-old neonatal piglets Porcine deltacoronavirus in mainland China Isolation and characterization of porcine deltacoronavirus from pigs with diarrhea in the United States Pathogenicity of 2 porcine deltacoronavirus strains in gnotobiotic pigs Complete genome characterization of Korean porcine deltacoronavirus strain KOR/KNU14-04/ 2014 Phylogenetic analysis of porcine astrovirus in domestic pigs and wild boars in South Korea 2015: Origin, evolution, and virulence of porcine deltacoronaviruses in the United States Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae Newly emerged porcine deltacoronavirus associated with diarrhoea in swine in China: identification, prevalence and full-length genome sequence analysis Treesub: annotating ancestral substitution on a tree Detection and genetic characterization of deltacoronavirus in pigs Porcine coronavirus HKU15 detected in 9 US states Porcine deltacoronavirus: histological lesions and genetic characterization Discovery of seven novel mammalian and avian coronaviruses in Deltacoronavirus supports bat coronaviruses as the gene source of Alphacoronavirus and Betacoronavirus and avian coronaviruses as the gene source of Gammacoronavirus and Deltacoronavirus PAML 4: phylogenetic analysis by maximum likelihood This study was supported by a grant (No. PJ011184) from BioGreen 21 Program, Rural Development Administration. key: cord-260212-m80dkzm4 authors: Lee, J. H.; Chung, H. C.; Nguyen, V. G.; Moon, H. J.; Kim, H. K.; Park, S. J.; Lee, C. H.; Lee, G. E.; Park, B. K. title: Detection and Phylogenetic Analysis of Porcine Deltacoronavirus in Korean Swine Farms, 2015 date: 2016-03-10 journal: Transbound Emerg Dis DOI: 10.1111/tbed.12490 sha: doc_id: 260212 cord_uid: m80dkzm4 This study applied molecular‐based method to investigate the presence of porcine deltacoronavirus (PDCoV) in 59 commercial pig farms in South Korea.


id: cord-309734-m8miwtha
author: Vergara‐Alert, J.
title: Middle East respiratory syndrome coronavirus experimental transmission using a pig model
date: 2017-06-26
extension: .txt
mime: text/plain
words: 1793
sentence: 67
flesch: 51
cache: cache/cord-309734-m8miwtha.txt
txt: txt/cord-309734-m8miwtha.txt
summary:
  Transbound Emerg Dis DOI: 10.1111/tbed.12668 sha: doc_id: 309734 cord_uid: m8miwtha Dromedary camels are the main reservoir of Middle East respiratory syndrome coronavirus (MERS‐CoV), but other livestock species (i.e., alpacas, llamas, and pigs) are also susceptible to infection with MERS‐CoV. Animal‐to‐animal transmission in alpacas was reported, but evidence for transmission in other species has not been proved. Middle East respiratory syndrome coronavirus (MERS-CoV) was first detected in 2012 in Saudi Arabia, and it causes severe acute respiratory illness with fever, cough and shortness of breath (Zaki, van Boheemen, Bestebroer, Osterhaus, & Fouchier, 2012) .


id: cord-293082-fw7deem8
author: Zhang, Guangzhi
title: Animal coronaviruses and SARS‐CoV‐2
date: 2020-08-16
extension: .txt
mime: text/plain
words: 2077
sentence: 54
flesch: 22
cache: cache/cord-293082-fw7deem8.txt
txt: txt/cord-293082-fw7deem8.txt
summary:
  All rights reserved of SARS-CoV-2 Genetic diversity and selection regulates evolution of infectious bronchitis virus Structural basis for human coronavirus attachment to sialic acid receptors Mutational analysis of aminopeptidase N, a receptor for several group 1 coronaviruses, identifies key determinants of viral host range Early death after feline infectious peritonitis virus challenge due to recombinant vaccinia virus immunization Feline infectious peritonitis viruses arise by mutation from endemic feline enteric coronaviruses Pathogenic characteristics of persistent feline enteric coronavirus infection in cats Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus Molecular Mechanism for Antibody-Dependent Enhancement of Coronavirus Entry Development of an Inactivated Vaccine Candidate SARS-CoV-2 invades host cells via a novel route: CD147-spike protein Importance of Neutralizing Monoclonal Antibodies Targeting Multiple Antigenic Sites on the Middle East Respiratory Syndrome Coronavirus Spike Glycoprotein To Avoid Neutralization Escape Emerging and re-emerging coronaviruses in pigs As for the receptors utilized by SARS-CoV-2, biophysical and structural data showed that the S 374 protein engages with ACE2 with at least 10 times higher affinity compared to that of SARS-CoV 375 (Wrapp et al. 2020 ).


id: cord-294021-x8avmtef
author: Pérez‐Rivera, Claudia
title: First report and phylogenetic analysis of porcine deltacoronavirus in Mexico
date: 2019-04-16
extension: .txt
mime: text/plain
words: 2176
sentence: 85
flesch: 48
cache: cache/cord-294021-x8avmtef.txt
txt: txt/cord-294021-x8avmtef.txt
summary:
  Porcine epidemic diarrhea virus and discovery of a recombinant swine enteric coronavirus Pathogenicity and pathogenesis of a United States porcine deltacoronavirus cell culture isolate in 5-day-old neonatal piglets Isolation and characterization of porcine deltacoronavirus from pigs with diarrhea in the United States Virus taxonomy: 2018 release ICTV Porcine deltacoronavirus infection: Etiology, cell culture for virus isolation and propagation, molecular epidemiology and pathogenesis MEGA 7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets Complete genome characterization of Korean porcine deltacoronavirus strain KOR/KNU14-04 Broad receptor engagement of an emerging global coronavirus may potentiate its diverse cross-species transmissibility Origin, evolution, and virulence of porcine deltacoronaviruses in the United States The detection and phylogenetic analysis of porcine deltacoronavirus from Guangdong Province in Southern China Porcine deltacoronavirus from the United States Rapid detection, complete genome, and phylogenetic analysis of porcine deltacoronavirus (Technical Appendix) We found 85 positive samples for porcine deltacoronavirus, representing 9.6% of the total samples, and we determined that the most frequent coinfection was with porcine epidemic diarrhoea virus (54.1%).


id: cord-289584-rbp7p8s9
author: Zhou, Ling
date: 2019-01-09
extension: .txt
mime: text/plain
words: 2242
sentence: 65
flesch: 46
cache: cache/cord-289584-rbp7p8s9.txt
txt: txt/cord-289584-rbp7p8s9.txt
title:
  Retrospective detection and phylogenetic analysis of swine acute diarrhoea syndrome coronavirus in pigs in southern China

summary:
  Molecular Evolutionary Genetics analysis version 7.0 for bigger datasets Evolution, antigenicity and pathogenicity of global porcine epidemic diarrhea virus strains The porcine microRNA transcriptome response to transmissible gastroenteritis virus infection The detection and phylogenetic analysis of porcine deltacoronavirus from Guangdong Province in Southern China Discovery of a novel swine enteric alphacoronavirus (SeA-CoV) in southern China Emergence of Porcine epidemic diarrhea virus in the United States: Clinical signs, lesions, and viral genomic sequences Outbreak of porcine epidemic diarrhea in suckling piglets Epidemiology and vaccine of porcine epidemic diarrhea virus in China: A mini-review Prospects for inferring very large phylogenies by using the neighbor-joining method Genetic analysis of porcine respiratory coronavirus, an attenuated variant of transmissible gastroenteritis virus Coronavirus genomics and bioinformatics analysis Discovery of seven novel Mammalian and Avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus The rate of co-infection for piglet diarrhea viruses in China and the genetic characterization of porcine epidemic diarrhea virus and porcine kobuvirus Fatal Swine Acute Diarrhea Syndrome caused by an HKU2-related Coronavirus of Bat Origin Multiple sequence alignmentwith the Clustal series of programs Porcine Deltacoronavirus in Mainland China Measurably evolving populations Epidemiological survey of porcine epidemic diarrhea virus in swine farms in A new bat-HKU2-like coronavirus in swine Phylogenetic and epidemic modeling of rapidly evolving infectious diseases MEGA7:


id: cord-318237-22s13v2y
author: Mira, Francesco
title: Spreading of canine parvovirus type 2c mutants of Asian origin in southern Italy
date: 2019-07-14
extension: .txt
mime: text/plain
words: 2553
sentence: 64
flesch: 30
cache: cache/cord-318237-22s13v2y.txt
txt: txt/cord-318237-22s13v2y.txt
summary:
  The Authors would like to thank the Centro Veterinario Darwin Analysis of canine parvovirus sequences from wolves and dogs isolated in Italy Evidence for evolution of canine parvovirus type 2 in Italy Introduction of canine parvovirus 2 into wildlife on the Island of Newfoundland Identification of a novel canine parvovirus type 2c in Taiwan ICTV virus taxonomy profile: parvoviridae Development and validation of a real-time PCR assay for specific and sensitive detection of canid herpesvirus 1 Canine parvovirus-A review of epidemiological and diagnostic aspects, with emphasis on type 2c Infectious canine hepatitis: An old disease reemerging in Italy Veterinary Microbiology Molecular insight into Italian canine parvovirus heterogeneity and comparison with the worldwide scenario Continuing evolution of canine parvovirus in China: Isolation of novel variants with an Ala5Gly mutation in the VP2 protein Phylogenetic analysis of canine parvovirus isolates from Sichuan and Gansu Provinces of China in 2011 Phylogenetic analysis of canine parvovirus VP2 gene in China Phylogenetic analysis of the VP2 gene of canine parvoviruses circulating in China A greedy algorithm for aligning DNA sequences


id: cord-284377-hsju2shr
author: Li, Meng
title: Vibrio vulnificus in aquariums is a novel threat to marine mammals and public health
date: 2018-07-26
extension: .txt
mime: text/plain
words: 2574
sentence: 100
flesch: 32
cache: cache/cord-284377-hsju2shr.txt
txt: txt/cord-284377-hsju2shr.txt
summary:
  Several animal models have been constructed to explore the increased susceptibility to V. vulnificus infections after the injection of iron-containing compounds. The disease progression of V. vulnificus infection is often acute, and it is therefore important to provide timely treatment with proper antibiotics.


id: cord-294698-mtfrbn87
author: Kim, H. K.
date: 2016-05-23
extension: .txt
mime: text/plain
words: 2689
sentence: 100
flesch: 51
cache: cache/cord-294698-mtfrbn87.txt
txt: txt/cord-294698-mtfrbn87.txt
title:
  Detection of Severe Acute Respiratory Syndrome‐Like, Middle East Respiratory Syndrome‐Like Bat Coronaviruses and Group H Rotavirus in Faeces of Korean Bats

summary:
  Therefore, in this study, we investigated viruses in bat species in Korea, using 49 faecal samples collected from July to December 2015 in 11 sites in natural bat habitats. This may imply that other strains or types of those coronaviruses may circulate in bat species in Korea.


id: cord-303289-qoukiqr7
author: Hemida, M. G.
title: Coronavirus infections in horses in Saudi Arabia and Oman
date: 2017-03-13
extension: .txt
mime: text/plain
words: 2821
sentence: 80
flesch: 44
cache: cache/cord-303289-qoukiqr7.txt
txt: txt/cord-303289-qoukiqr7.txt
summary:
  Presence of antibodies but no evidence for circulation of MERS-CoV in dromedaries on the Canary Islands Characterization of a coronavirus isolated from a diarrheic foal Seroepidemiology of Middle East respiratory syndrome (MERS) coronavirus in Saudi Arabia (1993) and Australia (2014) and characterisation of assay specificity Middle East Respiratory Syndrome (MERS) coronavirus seroprevalence in domestic livestock in Saudi Arabia Development of an equine coronavirus-specific enzyme-linked immunosorbent assay to determine serologic responses in naturally infected horses Human infection with MERS coronavirus after exposure to infected camels Serologic assessment of possibility for MERS-CoV infection in equids Absence of middle east respiratory syndrome coronavirus in camelids First detection of equine coronavirus (ECoV) in Europe Epidemic of equine coronavirus at Obihiro Racecourse, Hokkaido, Japan in 2012 Kinetics of serologic responses to MERS coronavirus infection in humans Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt Prevalence of equine coronavirus in nasal secretions from horses with fever and upper respiratory tract infection Geographic distribution of MERS coronavirus among dromedary camels Middle East respiratory syndrome coronavirus (MERS-CoV) Isolation and characterization of dromedary camel coronavirus UAE-HKU23 from dromedaries of the middle east: Minimal serological cross-reactivity between MERS coronavirus and dromedary camel coronavirus UAE-HKU23 Novel betacoronavirus in dromedaries of the Middle East SUPPORTING INFORMATION There were twenty-four sera with undetectable antibody to BCoV with detectable ECoV antibody titres ranging from 20 to 640.


id: cord-330364-ye02hwhy
author: Semenza, Jan C.
title: Systemic resilience to cross‐border infectious disease threat events in Europe
date: 2019-05-17
extension: .txt
mime: text/plain
words: 2744
sentence: 91
flesch: 35
cache: cache/cord-330364-ye02hwhy.txt
txt: txt/cord-330364-ye02hwhy.txt
summary:
  International Health Regulations (IHR) aim to prevent, detect and respond to such threats, through increase in national public health core capacities, but whether IHR core capacity implementation is necessary and sufficient has been contested. In contrast, our analysis showed that IHR core capacities relating to point‐of‐entry, zoonotic events or food safety were not associated with IDTE in the EU.


id: cord-279794-hn5vmic0
author: Guo, Jiahui
title: Evolutionary and genotypic analyses of global porcine epidemic diarrhea virus strains
date: 2018-08-27
extension: .txt
mime: text/plain
words: 2929
sentence: 106
flesch: 43
cache: cache/cord-279794-hn5vmic0.txt
txt: txt/cord-279794-hn5vmic0.txt
summary:
  Although increasing evidence suggests that PEDV routinely undergoes significant changes, especially in spike proteins (Lara-Romero et al., 2018; Stott et al., 2017) , the prevalence and evolution of PEDV strains is not well-defined and limited knowledge is known regarding the ways in which PEDV subgroups circulate among themselves and how they might influence the evolution of PEDV. These hot spot areas have the potential to be important reservoirs for the genetic variation of PEDVs, resulting in recombination between different PEDV subgroups.


id: cord-316006-t080mykk
author: Kong, Dechuan
title: Clusters of 2019 coronavirus disease (COVID‐19) cases in Chinese tour groups
date: 2020-07-27
extension: .txt
mime: text/plain
words: 3199
sentence: 134
flesch: 54
cache: cache/cord-316006-t080mykk.txt
txt: txt/cord-316006-t080mykk.txt
summary:
  In recent studies, clusters of COVID-19 cases have been principally identified in family settings (Bai et al., 2020; Chan et al., 2020) . Our study describes clusters of COVID-19 cases within tour groups travelling in European countries from January 16 through 28.


id: cord-339871-jso21mbx
author: Lee, Sunhee
date: 2018-05-16
extension: .txt
mime: text/plain
words: 3099
sentence: 96
flesch: 37
cache: cache/cord-339871-jso21mbx.txt
txt: txt/cord-339871-jso21mbx.txt
title:
  Genomic and antigenic characterization of porcine epidemic diarrhoea virus strains isolated from South Korea, 2017

summary:
  Lee http://orcid.org/0000-0002-5930-5461 Efficacy of an inactivated genotype 2b porcine epidemic diarrhea virus vaccine in neonatal piglets Nidovirales: A new order comprising Coronaviridae and Arteriviridae Isolation and characterization of porcine epidemic diarrhea viruses associated with the 2013 disease outbreak among swine in the United States Molecular characterization and phylogenetic analysis of membrane protein genes of porcine epidemic diarrhea virus isolates in China Sequence analysis of the porcine epidemic diarrhea virus genome between the nucleocapsid and spike protein genes reveals a polymorphic ORF Detection of antibodies against porcine epidemic diarrhea virus in serum and colostrum by indirect ELISA Nidovirales: Evolving the largest RNA virus genome Genetic characterization of porcine epidemic diarrhea virus in Korea from Completion of the porcine epidemic diarrhoea coronavirus (PEDV) genome sequence Isolation of porcine epidemic diarrhea virus (PEDV) in Korea Coronaviridae Lactogenic immunity and vaccines for porcine epidemic diarrhea virus (PEDV): Historical and current concepts Porcine epidemic diarrhea virus: An emerging and reemerging epizootic swine virus Isolation and characterization of a Korean porcine epidemic diarrhea virus strain KNU-141112 Reemergence of porcine epidemic diarrhea virus on Jeju Island Complete genome sequence of a novel porcine parainfluenza virus 5 isolate in Korea Outbreak-related porcine epidemic diarrhea virus strains similar to US strains Complete genome sequence of a novel S-insertion variant of porcine epidemic diarrhea virus from South Korea Heterogeneity in spike protein genes of porcine epidemic diarrhea viruses isolated in Korea Full-genome sequence analysis of a variant strain of porcine epidemic diarrhea virus in South Korea Genetic characteristics, pathogenicity, and immunogenicity associated with cell adaptation of a virulent genotype 2b porcine epidemic diarrhea virus Nsp3 of coronaviruses: Structures and functions of a large multi-domain protein New variants of porcine epidemic diarrhea virus, China US-like strain of porcine epidemic diarrhea virus outbreaks in Taiwan Ministry of agriculture, Forestry, and Fisheries Deadly pig virus slips through US borders Immunogenicity and protective efficacy of recombinant S1 domain of the porcine epidemic diarrhea virus spike protein The first case of porcine epidemic diarrhea in Canada Letter to the editor Porcine epidemic diarrhea (PED) in Europe and strategies to control outbreaks A new coronavirus-like particle associated with diarrhea in swine Chinese-like strain of porcine epidemic diarrhea virus Diseases of Swine The neighbor-joining method: A new method for reconstructing phylogenetic trees Molecular cloning: A laboratory manual Emergence of porcine epidemic diarrhea virus in the United States: Clinical signs, lesions, and viral genomic sequences An outbreak of swine diarrhea of a new-type associated with coronavirus-like particles in Japan MEGA4: key: cord-339871-jso21mbx authors: Lee, Sunhee; Lee, Changhee title: Genomic and antigenic characterization of porcine epidemic diarrhoea virus strains isolated from South Korea, 2017 date: 2018-05-16 journal:


id: cord-253450-k7p510p4
author: keha, Abi
date: 2019-05-31
extension: .txt
mime: text/plain
words: 3540
sentence: 96
flesch: 39
cache: cache/cord-253450-k7p510p4.txt
txt: txt/cord-253450-k7p510p4.txt
title:
  Prevalence of a novel bovine coronavirus strain with a recombinant hemagglutinin/esterase gene in dairy calves in China

summary:
  In this study, compared with other BCoV S genes, we found that nine out of 13 of our sequences and 13 Chinese BCoV sequences (one strain from cattle and 12 strains from Yaks), which clustered on a large independent branch of the phylogenetic tree, each had an identical aa variant (N1192Y) in the S2 subunit. The primary role of BCoV N protein is to package the viral genome into long, flexible, helical ribonucleoprotein (RNP) complexes, protect the genome and ensure its timely replication and reliable transmission, as well as playing a role in viral transcription and translation (Hurst, Ye, Goebel, Jayaraman, & Masters, 2010) .


id: cord-317455-6qx0v28w
author: Brown, Paul A.
date: 2018-09-10
extension: .txt
mime: text/plain
words: 3574
sentence: 108
flesch: 39
cache: cache/cord-317455-6qx0v28w.txt
txt: txt/cord-317455-6qx0v28w.txt
title:
  Transmission Kinetics and histopathology induced by European Turkey Coronavirus during experimental infection of specific pathogen free turkeys

summary:
  Salamanca Spain First complete genome sequence of European turkey coronavirus suggests complex recombination history related with US turkey and guinea fowl coronaviruses A nomenclature for avian coronavirus isolates and the question of species status Detection of a coronavirus from turkey poults in Europe genetically related to infectious bronchitis virus of chickens Viral agents associated with outbreaks of diarrhea in turkey flocks in Quebec Turkey coronavirus in Horizontal transmission of the virus via the airborne route was not observed however, via the oro‐faecal route this proved to be extremely rapid (one infectious individual infecting another every 2.5 hr) and infectious virus was excreted for at least 6 weeks in several birds.


id: cord-269287-vbuepdm4
author: Ogbu, Kenneth Ikejiofor
title: Nearly full‐length genome characterization of canine parvovirus strains circulating in Nigeria
date: 2019-10-16
extension: .txt
mime: text/plain
words: 3496
sentence: 90
flesch: 30
cache: cache/cord-269287-vbuepdm4.txt
txt: txt/cord-269287-vbuepdm4.txt
summary:
  Infection Spreading of canine parvovirus type 2c mutants of Asian origin in southern Italy Update on canine distemper virus (CDV) strains of Arctic-like lineage detected in dogs in Italy Introduction of Asian canine parvovirus in Europe through dog importation Canine parvovirus: The worldwide occurrence of antigenic variants Isolation of canine parvovirus from a cat manifesting clinical signs of feline panleukopenia Different mechanisms of antibody-mediated neutralization of parvoviruses revealed using the Fab fragments of monoclonal antibodies Effect of ATP binding and hydrolysis on dynamics of canine parvovirus NS1 Rapid antigenic-type replacement and DNA sequence evolution of canine parvovirus Natural variation of canine parvovirus Phylogenetic and genome-wide deep-sequencing analyses of canine parvovirus reveal co-infection with field variants and emergence of a recent recombinant strain Investigation on canine parvovirus circulation in dogs from Sicily (Italy) by biomolecular assay Nucleotide sequence and genome organization of canine parvovirus High rate of viral evolution associated with the emergence of carnivore parvovirus Antigenic and genetic analysis of canine parvoviruses in southern Africa Molecular characterization of canine parvovirus-2 variants circulating in Tunisia Survey on viral pathogens in wild red foxes (Vulpes vulpes) in Germany with emphasis on parvoviruses and analysis of a DNA sequence from a red fox parvovirus The three-dimensional structure of canine parvovirus and its functional implications Continuing evolution of canine parvovirus in China: Isolation of novel variants with an Ala5Gly mutation in the VP2 protein Detection of the canine parvovirus 2c subtype in australian dogs Phylogenetic analysis of canine parvovirus isolates from Sichuan and Gansu provinces of China in 2011 Phylogenetic analysis of canine parvovirus VP2 gene in China A greedy algorithm for aligning DNA sequences Typing of canine parvovirus strains circulating in North-East China Infection Canine parvovirus (CPV-2) variants circulating in Nigerian dogs Evaluation of Immunity and Seropositivity of IgG Antibodies to Canine Parvoviruses in Vaccinated and Unvaccinated Dogs in Abeokuta Analysis of canine parvovirus sequences from wolves and dogs isolated in Italy Introduction of canine parvovirus 2 into wildlife on the Island of Newfoundland Molecular and serological surveillance of canine enteric viruses in stray dogs from Vila do Maio, Cape Verde Identification of a novel canine parvovirus type 2c in Taiwan Molecular detection of canine parvovirus in Jos ICTV virus taxonomy profile: Parvoviridae The family Parvoviridae Canine parvovirus-a review of epidemiological and diagnostic aspects, with emphasis on type 2c Infectious canine hepatitis: An 'old' disease reemerging in Italy


id: cord-274773-3jhka8wl
author: Zhang, Jialin
date: 2019-09-30
extension: .txt
mime: text/plain
words: 3958
sentence: 152
flesch: 44
cache: cache/cord-274773-3jhka8wl.txt
txt: txt/cord-274773-3jhka8wl.txt
title:
  Pathogenicity of porcine deltacoronavirus (PDCoV) strain NH and immunization of pregnant sows with an inactivated PDCoV vaccine protects 5‐day‐old neonatal piglets from virulent challenge

summary:
  Therefore, fast and effective preventive measures are essential for the prevention and control of PDCoV. Currently, implementing vaccines remain the most effective means of disease control; however, there are no commercial vaccines available for PDCoV. Due to their immature immune system, neonatal piglets are highly susceptible to viral infection during their first few weeks of life. Immunized sows can transfer antibodies against enteroviruses (e.g. PEDV, TGEV and porcine rotavirus) to neonatal piglets through their colostrum and milk.


id: cord-010053-kniq2mbw
author: Lee, Sunhee
date: 2019-05-20
extension: .txt
mime: text/plain
words: 4072
sentence: 121
flesch: 39
cache: cache/cord-010053-kniq2mbw.txt
txt: txt/cord-010053-kniq2mbw.txt
title:
  Molecular characteristics and pathogenic assessment of porcine epidemic diarrhoea virus isolates from the 2018 endemic outbreaks on Jeju Island, South Korea

summary:
  An emerging and reemerging epizootic swine virus Porcine epidemic diarrhoea virus Heterogeneity in spike protein genes of porcine epidemic diarrhea viruses isolated in Korea Isolation and characterization of a Korean porcine epidemic diarrhea virus strain KNU-141112 Reemergence of porcine epidemic diarrhea virus on Jeju Island Outbreak-related porcine epidemic diarrhea virus strains similar to US strains Complete genome sequence of a novel S-insertion variant of porcine epidemic diarrhea virus from South Korea Genomic and antigenic characterization of porcine epidemic diarrhoea virus strains isolated from South Korea Genetic characteristics, pathogenicity, and immunogenicity associated with cell adaptation of a virulent genotype 2b porcine epidemic diarrhea virus Complete genome sequence of a novel porcine parainfluenza virus 5 isolate in Korea Nsp3 of coronaviruses: Structures and functions of a large multi-domain protein Attenuation of an original US porcine epidemic diarrhea virus strain PC22A via serial cell culture passage Cell culture isolation and sequence analysis of genetically diverse US porcine epidemic diarrhea virus strains including a novel strain with a large deletion in the spike gene A simple method of estimating fifty percent endpoints Porcine reproductive and respiratory syndrome virus nucleocapsid protein modulates interferon-β production by inhibiting IRF3 activation in immortalized porcine alveolar macrophages Coronaviruses The neighbor-joining method: A new method for reconstructing phylogenetic trees Mutation in the cytoplasmic retrieval signal of porcine epidemic diarrhea virus spike (S) protein is responsible for enhanced fusion activity Emergence of porcine epidemic diarrhea virus in the United States: Clinical signs, lesions, and viral genomic sequences MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0 The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Porcine epidemic diarrhea virus 3C-like protease regulates its interferon antagonism by cleaving NEMO An economic evaluation of intervention strategies for Porcine Epidemic Diarrhea (PED) Suppression of type I interferon production by porcine epidemic diarrhea virus and degradation of CREB-binding protein by nsp1 Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation Identification and pathogenicity of a variant porcine epidemic diarrhea virus field strain with reduced virulence


id: cord-291026-99cit4ig
author: Lung, O.
date: 2015-01-27
extension: .txt
mime: text/plain
words: 4574
sentence: 139
flesch: 44
cache: cache/cord-291026-99cit4ig.txt
txt: txt/cord-291026-99cit4ig.txt
title:
  Insulated Isothermal Reverse Transcriptase PCR (iiRT‐PCR) for Rapid and Sensitive Detection of Classical Swine Fever Virus

summary:
  In this study, we describe validation of a new probe‐based insulated isothermal reverse transcriptase PCR (iiRT‐PCR) assay for rapid detection of classical swine fever virus (CSFV) on a compact, user‐friendly device (POCKIT (™) Nucleic Acid Analyzer) that does not need data interpretation by the user. Classical swine fever virus (CSFV) is a member of the genus Pestivirus of the family Flaviviridae (Wengler 1991) .


id: cord-011411-hufxjf5p
author: Oliveira, Thalita Evani Silva
date: 2019-06-24
extension: .txt
mime: text/plain
words: 4598
sentence: 122
flesch: 19
cache: cache/cord-011411-hufxjf5p.txt
txt: txt/cord-011411-hufxjf5p.txt
title:
  Mycoplasma bovis and viral agents associated with the development of bovine respiratory disease in adult dairy cows

summary:
  When the histopathologic patterns were correlated with the TA B L E 3 Principal histopathologic diagnosis/features and immunohistochemical findings of bovine respiratory disease in 32 dairy cows Obliterative bronchiolitis M. bovis (10/10) Primary pulmonary infections due to BVDV were demonstrated experimentally (Fulton et al., 2016; Gershwin et al., 2015; Rodríguez et al., 1996) and observed in field outbreaks of BRD (Fulton et al., 2000 (Fulton et al., , 2004 Szeredi, Janosi, & Palfi, 2010 in coinfections (Ridpath, 2010) . Additionally, there is the isolation of M. bovis (Pretto et al., 2001) , while few studies from Brazil have investigated only BRSV by immunohistochemistry, IHC (Brasil et al., 2013; Peixoto et al., 2000) .


id: cord-342766-ndzhlf3k
author: Ku, X.
title: Identification and genetic characterization of porcine circovirus type 3 in China
date: 2017-03-19
extension: .txt
mime: text/plain
words: 1015
sentence: 35
flesch: 44
cache: cache/cord-342766-ndzhlf3k.txt
txt: txt/cord-342766-ndzhlf3k.txt
summary:
  PCV3 has been identified as a pathogen agent associated with pig diseases (Palinski et al., 2016 Isolation of porcine circovirus-like viruses from pigs with a wasting disease in the USA and Europe Detection of circovirus in foxes with meningoencephalitis Porcine circovirus a historical perspective Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces Genotype analysis of porcine circovirus 2 in some areas of China Circovirus in tissues of dogs with vasculitis and hemorrhage Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination Molecular biology of Porcine circovirus: Analyses of gene expression and viral replication Open reading frame 2 of porcine circovirus type 2 encodes a major capsid protein A novel porcine circovirus distantly related to known circoviruses is associated with porcine dermatitis and nephropathy syndrome and reproductive failure Genetic variability of porcine circovirus 2 (PCV2) field isolates from vaccinated and nonvaccinated pig herds in Germany Epidemiology and transmission of porcine circovirus type 2 PCV2 Genetic and antigenic characterization of a newly emerging Nucleotide position Similarity plot of the whole genome of 10 PCV3 isolates with 5 Bat circovirus isolates. key: cord-342766-ndzhlf3k authors: Ku, X.; Chen, F.; Li, P.; Wang, Y.; Yu, X.; Fan, S.; Qian, P.; Wu, M.; He, Q. title: Identification and genetic characterization of porcine circovirus type 3 in China date: 2017-03-19 journal:


id: cord-278154-oenuy07r
author: Gallien, Sarah
date: 2018-07-02
extension: .txt
mime: text/plain
words: 5613
sentence: 204
flesch: 51
cache: cache/cord-278154-oenuy07r.txt
txt: txt/cord-278154-oenuy07r.txt
title:
  Better horizontal transmission of a US non‐InDel strain compared with a French InDel strain of porcine epidemic diarrhoea virus

summary:
  Similar results were observed from faeces of direct contact pigs where PEDV RNA was detected in faeces of non-InDel direct contact pigs between 1 and 2 dpi and between 4.5 and 14 dpi in faeces of InDel direct contact pigs, that is, on average 7 days earlier for the non-InDel direct contact pigs. In contrast with non-InDel strains, exclusively reported in America and Asia, InDel strains were also identified in Europe since 2014 (EFSA, 2016; Stadler et al., 2015 , Vlasova et al., 2014 .


id: cord-331740-yjt3q9ph
author: Jones, R. M.
date: 2011-04-07
extension: .txt
mime: text/plain
words: 5873
sentence: 193
flesch: 41
cache: cache/cord-331740-yjt3q9ph.txt
txt: txt/cord-331740-yjt3q9ph.txt
title:
  Development and Validation of RT‐PCR Tests for the Detection and S1 Genotyping of Infectious Bronchitis Virus and Other Closely Related Gammacoronaviruses Within Clinical Samples

summary:
  Transport and initial processing of field samples Tissue samples (kidney, brain, liver, oviduct, bursa and respiratory and intestinal tracts) were collected from a variety of bird species (chicken, turkey, pheasant and pigeon) at post-mortem from cases with respiratory disease or suspected coronavirus infection based on clinical observations. The IBV S1 sequence files were taken from the public access Genbank database and included representatives of the major groups of IBV strains that are currently circulating in Europe alongside other IBV strains (see Fig. 1 ).


id: cord-351584-380s4j70
author: Ward, Michael P.
title: The role of climate during the COVID‐19 epidemic in New South Wales, Australia
date: 2020-06-01
extension: .txt
mime: text/plain
words: 2256
sentence: 72
flesch: 34
cache: cache/cord-351584-380s4j70.txt
txt: txt/cord-351584-380s4j70.txt
summary:
  In one of the first studies of its type, based on the daily count of COVID-19 cases in 30 Chinese provinces Qi et al. (2020) found significant negative associations between cases and average temperature and relative humidity. In the current study, our aim was to further investigate the relationship between reports of COVID-19 cases during the early epidemic phase in NSW, Australia and temperature and relative humidity.


id: cord-343949-zmuvq6e3
author: Lu, Gang
title: First report and genetic characterization of feline kobuvirus in diarrhoeic cats in China
date: 2018-06-06
extension: .txt
mime: text/plain
words: 2134
sentence: 82
flesch: 53
cache: cache/cord-343949-zmuvq6e3.txt
txt: txt/cord-343949-zmuvq6e3.txt
summary:
  In 2015, Barbara Di Martino et al. screened faecal samples obtained from asymptomatic and diarrhoeic cats for FeKoV RNA in Italy (Di Martino, Profio, Melegari, Marsilio, & Martella, 2015) . FeKoV RNA was found in five of 37 diarrhoeic cats but was undetected in asymptomatic cats.


id: cord-326596-8ux1q9xw
author: Chen, Yanyu
date: 2018-09-08
extension: .txt
mime: text/plain
words: 2667
sentence: 69
flesch: 33
cache: cache/cord-326596-8ux1q9xw.txt
txt: txt/cord-326596-8ux1q9xw.txt
title:
  Biological and phylogenetic characterization of a novel hemagglutination‐negative avian avulavirus 6 isolated from wild waterfowl in China

summary:
  Yin http://orcid.org/0000-0001-7431-2523 Newcastle disease and other avian paramyxoviruses Taxonomy of the order Mononegavirales: update 2017 Complete genome sequence of a novel avian paramyxovirus Characterization of a genetic and antigenic variant of avian paramyxovirus 6 isolated from a migratory wild bird, the red-necked stint (Calidris ruficollis) Evaluation of the replication and pathogenicity of a variant avian paramyxovirus serotype 6 in mice Development of an improved vaccine evaluation protocol to compare the efficacy of Newcastle disease vaccines Complete nucleotide sequence of avian paramyxovirus type 6 isolated from ducks Genetic diversity of avian paramyxovirus type 6 isolated from Wild Ducks in the Republic of Genetic diversity of avian paramyxovirus type 1: Proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes A virological survey in migrating waders and other waterfowl in one of the most important resting sites of Germany Complete genome sequence of a novel avian paramyxovirus isolated from wild birds in South Korea Characterization of class I Newcastle disease virus isolates from Hong Kong live bird markets and detection using real-time reverse transcription-PCR The Molecular Biology of Paramyxoviruses MEGA X: Molecular evolutionary genetics analysis across computing platforms A novel avian paramyxovirus (putative serotype 15) isolated from wild birds Novel avulaviruses in penguins OIE, the World Organisation for Animal Health Newcastle Disease, Pneumovirus Infection and Other Paramyxoviruses The Biology of paramyxoviruses Experimental infection of hamsters with avian paramyxovirus serotypes 1 to 9 Newcastle disease in Nigeria: Epizootiology and current knowledge of circulating genotypes Isolation and properties of viruses from poultry in Hong Kong which represent a new (sixth) distinct group of avian paramyxoviruses Characterization of avian paramyxovirus type 6 isolated from a Eurasian teal in the intersection of migratory flyways in Russia Characterization of avian paramyxovirus serotype 14, a novel serotype, isolated from a duck fecal sample in Japan Novel avian paramyxovirus (APMV-15) isolated from a migratory bird in South America Complete nucleotide sequence of avian paramyxovirus type 6 strain JL isolated from mallard ducks in China Sensitive and broadly reactive reverse transcription-PCR assays to detect novel paramyxoviruses Surveillance of avian paramyxovirus in migratory waterfowls in the San-in region of western Japan from Prevalence of antibodies to different avian paramyxoviruses in commercial poultry in the United States Comparative study on the pathogenicity and immunogenicity of wild bird isolates of avian paramyxovirus 2, 4, and 6 in chickens Complete genome sequences of avian paramyxovirus serotype 6 prototype strain Hong Kong and a recent novel strain from Italy: Evidence for the existence of subgroups within the serotype Genetic diversity of the genotype VII Newcastle disease virus: Identification of a novel VIIj sub-genotype Identification and pathotypical analysis of a novel VIk sub-genotype Newcastle disease virus obtained from pigeon in China Completion of full length genome sequence of novel avian paramyxovirus strain APMV/Shimane67 isolated from migratory wild geese in Japan Characterization of novel avian paramyxovirus strain APMV/Shimane67 isolated from migratory wild geese in Japan Dispersal and transmission of avian paramyxovirus serotype 4 among wild birds and domestic poultry Enhanced replication of virulent newcastle disease virus in chicken macrophages is due to polarized activation of cells by inhibition of TLR7 High genetic diversity of newcastle disease virus in wild and domestic birds in Northeastern China from 2013 to 2015 reveals potential epidemic trends Biological and phylogenetic characterization of a novel hemagglutination-negative avian avulavirus 6 isolated from wild waterfowl in China Avian paramyxoviruses that have been isolated from birds; however, due to changes in taxonomy is now referred to as avian avulavirus (AAvV) (Amarasinghe et al., 2017 ).


id: cord-284398-rhfwbyav
author: Aboubakr, Hamada A.
date: 2020-07-14
extension: .txt
mime: text/plain
words: 6436
sentence: 221
flesch: 43
cache: cache/cord-284398-rhfwbyav.txt
txt: txt/cord-284398-rhfwbyav.txt
title:
  Stability of SARS‐CoV‐2 and other coronaviruses in the environment and on common touch surfaces and the influence of climatic conditions: A review

summary:
  The effects of temperature and relative humidity on the viability of the SARS coronavirus SARS-CoV-2-positive sputum and feces after conversion of pharyngeal samples in patients with COVID-19 Viral replication in the nasopharynx is associated with diarrhea in patients with severe acute respiratory syndrome Stability of SARS-CoV-2 in different environmental conditions The SRAS-COV-2 nucleic acid detected for the first time on the surface of door handle in Guangzhou and cleaning taken attention Physico-chemical properties of murine hepatitis virus, strain A59 Inactivation of the coronavirus that induces severe acute respiratory syndrome, SARS-CoV Building a COVID-19 Vulnerability Index SARS-CoV-2: A novel deadly virus in a globalised world Identification of a novel coronavirus in patients with severe acute respiratory syndrome Stability of SARS coronavirus in human specimens and environment and its sensitivity to heating and UV irradiation The effect of UVB irradiation on antibody responses during herpes simplex virus type 1 (HSV-1) infections of mice. No Evidence for Temperature-Dependence of the COVID-19 Epidemic Coronavirus Resource Center Inactivation of SARS coronavirus by means of povidone-iodine, physical conditions and chemical reagents Changes to taxonomy and the international code of virus classification and nomenclature ratified by the international committee on taxonomy of viruses Projecting the transmission dynamics of SARS-CoV-2 through the postpandemic period Reduced antigen-presenting function of human Epstein-Barr virus (EBV)-B cells and monocytes after UVB radiation is accompanied by decreased expression of B7, intercellular adhesion molecule-1 (ICAM-1) and LFA-3 Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and corona virus disease-2019 (COVID-19): The epidemic and the challenges Survival of severe acute respiratory syndrome coronavirus Effect of pH and temperature on the infectivity of human coronavirus 229E Thermal inactivation studies of a coronavirus, transmissible gastroenteritis virus Heat inactivation of the Middle East respiratory syndrome coronavirus.


id: cord-352211-3ps5o8ji
author: Mai, K.
date: 2017-03-27
extension: .txt
mime: text/plain
words: 2117
sentence: 72
flesch: 45
cache: cache/cord-352211-3ps5o8ji.txt
txt: txt/cord-352211-3ps5o8ji.txt
title:
  The detection and phylogenetic analysis of porcine deltacoronavirus from Guangdong Province in Southern China

summary:
  Molecular Biology and Evolution Development and application of an ELISA for the detection of porcine deltacoronavirus IgG antibodies Evidence of recombinant strains of porcine epidemic diarrhea virus, United States New chimeric porcine coronavirus in swine feces, Germany Detection and genetic characterization of deltacoronavirus in pigs Comparison of lentiviruses pseudotyped with S proteins from coronaviruses and cell tropisms of porcine coronaviruses Molecular epidemiological investigation of porcine kobuvirus and its coinfection rate with PEDV and SaV in Northwest China Complete genome sequence of porcine deltacoronavirus strain CH/Sichuan/S27/2012 from Mainland China Discovery of seven novel mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus Occurrence and sequence analysis of porcine deltacoronaviruses in southern China Structural and functional characterization of the fusion core complex Putative phage-display epitopes of the porcine epidemic diarrhea virus S1 protein and their anti-viral activity The SARS coronavirus S glycoprotein receptor binding domain: Fine mapping and functional characterization Pathogenicity and pathogenesis of a United States porcine deltacoronavirus cell culture isolate in 5-day-old neonatal piglets Full-length genome characterization of Chinese porcine deltacoronavirus strain CH/SXD1/2015 Infection of farmed pigs with porcine kobuviruses in Italy Porcine deltacoronavirus in mainland China Characterization and evolution of porcine deltacoronavirus in the United States Porcine deltacoronavirus Genomic and evolutionary inferences between American and global strains of porcine epidemic diarrhea virus Detection and phylogenetic analysis of porcine deltacoronavirus in Korean swine farms Complete genome characterization of Korean porcine deltacoronavirus strain KOR/KNU14-04 Full-length genome sequence of porcine deltacoronavirus strain USA/IA/2014/8734 The first detection and fulllength genome sequence of porcine deltacoronavirus isolated in Lao PDR Origin, evolution, and virulence of porcine deltacoronaviruses in the United States Complete genome sequence of porcine deltacoronavirus isolated in Thailand Complete genome sequence of strain SDCV/USA/Illinois121/2014, a porcine deltacoronavirus from the United States Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus.


id: cord-283316-a8jewy2h
author: Bianchini, Juana
date: 2019-10-09
extension: .txt
mime: text/plain
words: 6674
sentence: 254
flesch: 46
cache: cache/cord-283316-a8jewy2h.txt
txt: txt/cord-283316-a8jewy2h.txt
title:
  Prioritization of livestock transboundary diseases in Belgium using a multicriteria decision analysis tool based on drivers of emergence

summary:
  Iowa State University Evidence of Schmallenberg virus circulation in ruminants in Greece Identification of wild boar-habitat epidemiologic cycle in African Swine fever epizootic Multi-criteria decision analysis tools for prioritising emerging or re-emerging infectious diseases associated with climate change in Canada Emerging infectious diseases of wildlife-threats to biodiversity and human health Regional and international approaches on prevention and control of animal transboundary and emerging diseases The highly pathogenic avian influenza A (H7N7) virus epidemic in The Netherlands in 2003-lessons learned from the first five outbreaks amending Annexes I and II to Council Directive 82/894/EEC on the notification of animal diseases within the Community Scientific Opinion on African swine fever Scientific opinion on porcine epidemic diarrhoea and emerging porcine deltacoronavirus Situation zoosanitaire et maladies à déclaration obligatoire en Belgique Notification Obligatoire Federal Ministry of Food and Agriculture of Germany Animal production health Phylogeographic analysis of African Swine Fever Virus Prioritizing emerging zoonoses in the Netherlands Multidisciplinary and evidence-based method for prioritizing diseases of food-producing animals and zoonoses Emerging and re-emerging zoonotic diseases: Challenges and opportunities. Transbound Emerg Dis DOI: 10.1111/tbed.13356 sha: doc_id: 283316 cord_uid: a8jewy2h During the past decade, livestock diseases have (re‐)emerged in areas where they had been previously eradicated or never been recorded before.


id: cord-354729-dpaz01np
author: Huan, Changchao
date: 2019-08-22
extension: .txt
mime: text/plain
words: 2527
sentence: 101
flesch: 50
cache: cache/cord-354729-dpaz01np.txt
txt: txt/cord-354729-dpaz01np.txt
title:
  Characterization and evolution of the coronavirus porcine epidemic diarrhoea virus HLJBY isolated in China

summary:
  For pathogenicity evaluation of PEDV HLJBY strain, colostrum deprivation piglets were challenged with PEDV HLJBY, and PEDV reference strain CV777 as a control, the results showed that animals challenged with either of these PEDV strains developed diarrhoea, and histopathological examination of small intestines of challenged animals showed acute viral enteritis with villous atrophy in either PEDV HLJBY‐P10 or PEDV CV777‐P8 inoculated piglets. cluding a positive-sense single-strand RNA genome, which can cause a devastating enteric disease characterized with dehydration and watery diarrhoea (Pensaert & de Bouck, 1978) . To reveal the characteristic and the diversity between PEDV strains currently circulating in China and other PEDV strains outside, the complete genomic sequence of PEDV HLJBY strain was determined and analysed, and the pathogenicity of PEDV HLJBY strain in newborn piglets was also evaluated.


id: cord-351564-nikcd44o
author: Zhang, Xiaozhan
date: 2020-01-24
extension: .txt
mime: text/plain
words: 2808
sentence: 83
flesch: 34
cache: cache/cord-351564-nikcd44o.txt
txt: txt/cord-351564-nikcd44o.txt
title:
  Molecular characterization of variant infectious bronchitis virus in China, 2019: Implications for control programmes

summary:
  Recombination events among IBV strains were further investigated using the RDP4 software, a widely used tool for analysing individual recombination events and overall recombination patterns, by seven different algorithms recombination detection program (RDP), Bootscan, MaxChi, GENECONV, Chimaera, SiScan and 3Seq (Martin, Murrell, Khoosal, & Muhire, 2017 ). As shown in Figure S1a To further characterize the biology and ecology of the newly identified IBV strains, we sequenced the complete S1 genes of Phylogenetic relationship among IBV strains has been established on the analysis of complete S1 gene.


id: cord-302819-oj33i2ma
author: Pasick, J
date: 2014-08-07
extension: .txt
mime: text/plain
words: 7964
sentence: 278
flesch: 48
cache: cache/cord-302819-oj33i2ma.txt
txt: txt/cord-302819-oj33i2ma.txt
title:
  Investigation into the Role of Potentially Contaminated Feed as a Source of the First-Detected Outbreaks of Porcine Epidemic Diarrhea in Canada

summary:
  Because the negative control group from this bioassay was co-mingled with the experimental groups, negative control piglets were not available for microscopic examination. Thus, negative control piglets from the second bioassay experiment euthanized at 12 dpi were used for the histopathology and immunohistochemistry observations.


id: cord-294468-0v4grqa7
author: Kasilingam, Dharun
date: 2020-08-04
extension: .txt
mime: text/plain
words: 7493
sentence: 353
flesch: 48
cache: cache/cord-294468-0v4grqa7.txt
txt: txt/cord-294468-0v4grqa7.txt
title:
  Exploring the Growth of COVID‐19 Cases using Exponential Modelling Across 42 Countries and Predicting Signs of Early Containment using Machine Learning

summary:
  Data associated with the variables were collected from different official sources for a total of 42 counties with respect to COVID-19 infections as on 26 th March 2020. In line with the objectives of the study, classifiers were built based on a set of independent variables to predict if a country that has COVID-19 infections showed early signs of infection containment as a reflection of policy implementations and behaviour changes.


id: cord-331932-oujdl459
author: Lung, O.
title: Multiplex PCR and Microarray for Detection of Swine Respiratory Pathogens
date: 2015-12-12
extension: .txt
mime: text/plain
words: 6365
sentence: 195
flesch: 33
cache: cache/cord-331932-oujdl459.txt
txt: txt/cord-331932-oujdl459.txt
summary:
  Duplex and triplex real-time PCR for porcine respiratory viruses have also been recently described (Chang et al., 2014; Wu et al., 2014) . The DNeasy Blood and Tissue Kit and the Viral RNA Mini extraction kit were the most efficient for the tested bacteria and virus targets, respectively (data not shown).


# ent

id: cord-284398-rhfwbyav
sid: 201
eid: 1
type: ORG
entity:
  hamada a. aboubakr https://orcid.org/0000-0002-8233-2353 tamer a. sharafeldin https://orcid.org/0000-0001-6422-4730 sagar m. goyal https://orcid.org/0000-0002-7781-3080 involvement


