Endourology and Stone Disease

28 Urology Journal    Vol 5    No 1    Winter 2008

Delayed Versus Same-Day Percutaneous 
Nephrolithotomy in Patients With Aspirated  
Cloudy Urine
Masoud Etemadian,1 Ramin Haghighi,1 Ali Madineay,1 Adel Tizeno,1  
Seyed Mohammad Fereshtehnejad2

Introduction: We present our experience in continuing percutaneous 
nephrolithotomy (PCNL) versus delayed PCNL when purulent fluid is 
aspirated during access to the pyelocaliceal system. 
Materials and Methods: This randomized controlled study was carried 
out on patients who had purulent urine in the pyelocaliceal system at the 
initial puncturing during PCNL. Patients with recent untreated urinary tract 
infection, thick or foul pus in aspirated urine, fever, and immunocompromised 
condition were excluded. Thirty-one patients were randomly divided into 
2 groups. In group 1, PCNL was continued, but in group 2, nephrostomy 
tube was placed and PCNL was performed 10 days later after documented 
sterile nephrostomy urine. The preoperative and postoperative findings were 
compared. 
Results: There were 16 and 15 patients in groups 1 and 2, respectively. All 
patients had negative urine cultures for microorganisms, preoperatively. 
The purulent aspirated fluid was infected in 43.8% and 40.0% of the patients 
in groups 1 and 2, respectively. Postoperative fever was seen in 25.0% and 
26.7% of the patients, respectively. No statistical differences were observed 
between the two groups in terms of bacteriuria, bacteremia, positive calculus 
cultures, or stone-free rates, and duration of hospitalization between groups 
1 and 2, respectively. More analysis with linear regression model showed 
that postoperative positive blood culture (P < .001), fever (P = .001), and 
postoperative positive urine culture (P = .02) correlated with duration of 
hospitalization. 
Conclusion: In the absence of untreated recent UTI and aspiration of thick or 
foul pus, continuing PCNL can be safe while purulent urine is encountered.

Keywords: urinary tract infection, 
percutaneous nephrolithotomy, 

suppuration  

1Department of Endourology, 
Shaheed Hasheminejad Kidney 

Center, Iran University of Medical 
Sciences, Tehran, Iran 

2Medical Students Research 
Committee, Iran University of 

Medical Sciences, Tehran, Iran

Corresponding Author:
Masoud Etemadian, MD

Department of Urology, Shaheed 
Hasheminejad Hospital, Vanak Sq, 

Tehran, Iran
Tel: +98 21 8864 4444

Fax: +98 21 8864 4447
E-mail: etemadian@hotmail.com

Received September 2007
Accepted January 2008 

INTRODUCTION
Technical advances and increased 
experience have resulted in 
considerable refinement of the 
percutaneous approach to kidney 
calculi. Significant reductions in 
morbidity and costs have occurred 
because of the development of 
nephrostomy tract balloon dilators, 
improved grasping instruments, 

and the use of improved methods of 
calculus fragmentation and removal.
(1,2) However, even in experienced 
hands, major and minor 
complications may be occurring 
in 1.1% to 7% and 11% to 25% of 
patients, respectively.(3,4) Therefore, 
more efforts have been performed 
to minimize the complications of 
percutaneous approach to kidney 

Urol J. 2008;5:28-33. 
www.uj.unrc.ir



Percutaneous Nephrolithotomy and Cloudy Urine—Etemadian et al

Urology Journal    Vol 5    No 1    Winter 2008 29

calculi. One of these is recently focused on the 
patients with purulent fluid culture.(5)

Some patients undergoing percutaneous 
nephrolithotomy (PCNL) have purulent fluid in 
the pyelocaliceal system at the time of puncture. 
On the other hand, aspiration of incidentally 
detected purulent fluid at the time of puncture 
in patients who are candidates for PCNL, when 
there is no fever and bacteriuria or recent urinary 
tract infection (UTI), is not common. Current 
recommendation in these situations is to place 
nephrostomy tube and postpone PCNL until the 
urine from the nephrostomy tube is clear and 
sterile.(5) We challenged this strategy with this 
prospective comparative study by continuing 
PCNL in selected number of patients with 
purulent fluid and comparing the results with the 
ones who underwent delayed PCNL.

MATERIALS AND METHODS

Patients
Between March 2005 and July 2007, a total of 
520 patients underwent PCNL at our center. The 
present randomized controlled trial study was 
carried out on patients who had purulent urine 
in the pyelocaliceal system at initial puncture. 
The study was approved by the medical ethics 
committee of Iran University of Medical Sciences. 
Patients with recent untreated UTI, thick or foul 
pus in aspirated urine, fever, diabetes mellitus, and 
immunocompromised status were excluded. Of 45 
patients with purulent urine, 31 met our inclusion 
criteria and all of them provided written informed 
consent. The enrolled patients were randomly 
divided into 2 groups using simple randomization 
method with the help of a computer-generated 
table of random numbers. 

Group 1 consisted of 16 patients who underwent 
PCNL at the same day of aspiration, and in 15 
patients in group 2, PCNL was performed 10 days 
after insertion of nephrostomy tube following 
purulent urine aspiration. Sterile nephrostomy 
urine was documented in all of the patients of 
group 2. 

Preoperative Care
All of the patients had documented negative 

urine cultures preoperatively. All of the patients 
received intravenous cefazolin, 1 g, 1 hour 
preoperatively. An intravenous aminoglycoside 
was also started on for all of the patients when 
purulent urine was encountered, and it was 
continued in the postoperative period until the 
results of urine and blood cultures were ready. 
Preoperative routine evaluations were done in all 
of the patients. Routine preoperative laboratory 
tests were unremarkable. 

Surgical Technique
Tubeless PCNL with ureteral catheter placement 
was performed in the two groups either at the 
same day of purulent urine aspiration or 10 
days thereafter, all by the same surgeon. In 
both groups, access to the pyelocaliceal system, 
preferably through the lower calyx, was achieved 
under fluoroscopic guidance. With the patient 
under general anesthesia, a 5-F open-ended 
ureteral catheter was passed cystoscopically and 
secured to a Foley catheter. Then the patient was 
placed in the prone position. Access was achieved 
by advancement of an 18-gauge translumbar 
angiography needle in the plane of the 
fluoroscope beam. Tract was dilated over the wire 
to 30 F using one-shot method. A 30-F Amplatz 
sheath was placed. The calculi were fragmented 
using pneumatic lithotripter, and in some cases, 
plus ultrasonic lithotripter. Additional tracts 
were created whenever necessary with the aim 
of complete calculus clearance and drainage of 
all obstructed calyces. Nephroscopy and calculus 
fragmentation were performed in low pressure 
field through the procedures. After complete 
calculus clearance was confirmed fluoroscopically 
and endoscopically, the 5-F ureteral catheter 
was left in place. Then the Amplatz sheath was 
removed and nephrostomy was not placed in any 
of the patients. 

Postoperative Care
Closed observation and checking of vital signs 
were performed for all of the patients after the 
procedure. Noncontrast computed tomography 
(CT) was done on the first postoperative day. 
Data including operative time, duration of 
hospital stay, stone-free rate, cultures of the 



Percutaneous Nephrolithotomy and Cloudy Urine—Etemadian et al

30 Urology Journal    Vol 5    No 1    Winter 2008

purulent fluid, laboratory studies and cultures 
of urine and blood, and rate of fever and sepsis 
episodes were recorded. In addition, calculus 
cultures were performed in all of the patients. 

Statistical Analyses
Data were analyzed using the SPSS (Statistical 
Package for the Social Sciences, version 13.0, 
SPSS Inc, Chicago, Ill, USA). The Student t test, 
and the Mann-Whitney U test, and the chi-
square test were used for comparisons between 
the two groups. Also, linear regression model 
was performed to evaluate the factors affecting 
duration of hospital stay. Quantitative variables 
were provided as mean   standard deviation. P 
values less than .05 were regarded significant.

RESULTS
All of the patients completed the study. They 
were 22 men (71.0%) and 9 women (29.0%) with 
a mean age of 42.2   12.5 years (range, 19 to 68 
years). As it is listed in Table 1, the patients’ 
demographic and clinical characteristics were 

similar in the two groups. The mean age, sex 
distribution, operative time, and calculus size 
and composition did not differ significantly 
between the two groups. Additionally, all patients 
had documented negative urine cultures for 
microorganisms, preoperatively. 

The purulent aspirated fluid was infected in 43.8% 
and 40.0% of the patients in groups 1 and 2,  
respectively. Enterobacteriaceae were the only 
detected bacteria, with Escherichia coli to be the 
most common bacterium in both groups. Urine 
cultures in group 1 showed Escherichia coli in 4 
patients, Proteus mirabilis in 2, and Pseudomonas 
aeruginosa in 1. In group 2, urine cultures revealed 
Escherichia coli in 4 patients, Proteus mirabilis in 1, 
and Klebsiella pneumoniae in 1. 

Four patients in each group developed mild fever 
(< 38.5°C) who were treated conservatively. One 
patient in group 1 developed severe fever (39°C) 
that was managed conservatively. His hospital 
stay lasted 7 days. Additional blood cultures were 
negative in this patient.

Parameter Group 1
(Same-Day PCNL)

Group 2
(Delayed PCNL) P

Patients 16 15 …
Age, y 42.2 ± 12.4 42.1 ± 13.0 .99
Sex

Female  12 (75.0)  10 (66.7)
Male  4 (25.0)  5 (33.3) .70

Calculus size, mm 33.94 ± 5.26 36.20 ± 5.43 .25
Stone composition

Calcium oxalate  10 (62.5)  9 (60.0)
Uric acid  2 (12.5)  2 (13.3)
Struvite  4 (25.0)  4 (26.7) .99

Operative time, min 68.1 ± 14.9 67.3 ± 14.6 .89
Number of tracts 1.3 ± 0.5 1.3 ± 0.5 .79
Blood transfusions  1 (6.3)  2 (13.3) .60
Postoperative results

Positive urine culture  5 (37.5) 33.3 .81
Positive purulent fluid culture  7 (43.8)  6 (40.0) .83
Positive blood culture  1 (6.3)  1 (6.7) .58
Fever

Negative  12 (75.0)  11 (73.3)
< 38.5°C  3 (18.8)  4 (26.7)
> 38.5°C  1 (6.3) 0 .56

Stone-free rate, % 93.7 93.3 .77
Duration of hospitalization, d 2.7 ± 1.4 2.5 ± 0.9 .96

Table 1. Demographic and Clinical Parameters in Patients Who Underwent Percutaneous Nephrolithotomy (PCNL) Just After Aspiration 
of Cloudy Urine (Groups 1) or 10 Days Thereafter (Group 2)*

*Values in parentheses are percents. Values of continuous variables are demonstrated as mean ± standard deviation. Ellipsis indicates not 
applicable.



Percutaneous Nephrolithotomy and Cloudy Urine—Etemadian et al

Urology Journal    Vol 5    No 1    Winter 2008 31

No statistical differences were observed between 
two groups in terms of bacteriuria, bacteremia, 
positive calculus cultures, or postoperative fever. 
Additionally, there were no significant differences 
in the stone-free rate (93.7% versus 93.3%, P = .77)  
and duration of hospitalization (2.69 ± 1.40  
days versus 2.53 ± 0.91 days, P = .96) between 
groups 1 and 2, respectively. However, more 
analysis with linear regression model showed that 
postoperative positive blood culture (P < .001), 
fever (P = .001), and postoperative positive urine 
culture (P = .02) significantly correlated with 
duration of hospitalization (P < .001, R2 = 0.895). 
Table 2 outlines the results of linear regression 
model. 

DISCUSSION
Percutaneous extraction of kidney calculi in 
patients whose urines are sterile is considered to 
be a clean-contaminated surgery. Postoperative 
infections, if any, are thought to be the result 
of the urethral catheter, nephrostomy tube, 
obstructed calyxes or pelvis, calculus-bearing 
bacteria, and blood transfusion.(6) 

It is not uncommon to find purulent fluid at 
the time of achieving access during PCNL. The 
aspirated fluid is not always infected, but the 
microorganisms which are more implicated are 
the Gram-negative bacteria. Aron and colleagues(7) 
reported that fewer than half of the patients 
in their series had organisms recovered on the 
culture of the purulent fluid from the kidney, 
indicating that the pus may be sterilized by 
previous antibiotic use or that it may represent 
a sterile inflammatory tissue response to the 
calculus. Even turbidity secondary to macroscopic 
crystalline or amorphous calculi debris can cause 
such a fluid.(7) 

A patient with intracollecting system abscess, 

such as a pyocalix or pyonephrosis secondary to 
infection and distal obstruction, presents with 
an acute septicemia or a chronic condition. The 
patient’s symptoms may be so minimal if they 
suffer from a chronic condition. Fever and a slight 
flank discomfort might be the only symptoms 
which are prone to negligence. These patients 
may have only a mild leukocytosis and the urine 
culture is often negative for infection.(8) It is 
usually advised not to attempt to perform PCNL 
in such situations. It is reported that after 5 to 7 
days of antibiotic coverage, the urine cultured 
from the bladder and the drained catheter is 
usually sterile. At this time, therapy for kidney 
calculi can be safely pursued.(9) 

In a study of the cultures of urinary calculi 
obtained from patients with preoperative 
bacteriuria, it was revealed that 77% of the 
calculi harbored bacteria.(10) Hence, urinary 
calculi provide a good condition for the 
bacteria. On the other hand, the presence of 
sterile urine in a patient with calculus does not 
preclude postoperative bacteriuria. Charton 
an coworkers(11) recorded a 35% incidence of 
bacteriuria after PCNL among patients with 
sterile preoperative urine culture in whom 
prophylactic antibiotic therapy was not used.  
In another study to evaluate the risk factors 
of postoperative complications of PCNL, 
Vorrakitpokatorn and colleagues(12) reported that 
infection is the most serious complication of 
PCNL and increase length of hospital stay, and 
antibiotics started at the beginning of the surgery 
could not always prevent this event.

Complications during or after PCNL may be 
present with an overall rate of up to 83%, of 
which fever is a frequent one.(13) The reported 
frequency of fever after PCNL is between 
25.8% and 35% in the current literature.(13-16) 

Variable UnstandardizedCoefficient B (SE)
Standardized

Coefficient Beta t P

Constant 2.01 (0.09) …  22.30  < .001
Postoperative positive blood culture 2.15 (0.32) 0.55  6.64  < .001
Postoperative  fever 0.77 (0.21) 0.35  3.65  .001
Postoperative positive urine culture 0.48 (0.19) 0.20  2.48  .02

Table 2. Linear Regression Model for Prediction of Hospital Stay Duration (R2 = 0.895)*

*Ellipsis indicates not applicable. SE indicates standard error.



Percutaneous Nephrolithotomy and Cloudy Urine—Etemadian et al

32 Urology Journal    Vol 5    No 1    Winter 2008

The duration of surgery and the amount of 
irrigation fluid can be significant risk factors for 
postoperative fever.(17) Systemic absorption of 
irrigation fluid containing bacteria or endotoxin 
may lead to fever and urosepsis after percutaneous 
nephrolithotomy.(18) Fluid can be absorbed 
through pyelovenous-lymphatic back-flow, 
pyelotubular backflow, and forniceal rupture.(18) 
In our study, when purulence was encountered 
after Amplatz sheath placement, we sucked 
out all the fluid and then gently irrigated the 
pyelocaliceal system directly under low pressure 
without the use of nephroscope. Saltzman and 
coworkers(19) showed that using a nephroscopy 
sheath results in lower intrarenal pressure than 
using a telescopic dilating system in creating the 
nephrostomy tract. In another study by Troxel 
and Low,(18) 64% and 24% of the patients with 
infectious and noninfectious calculi had post-
PCNL fever, respectively. They suggested that 
there was no association between renal pressure 
greater than 30 mm Hg and fever; however, 
postoperative fever and PCNL done for infection-
related calculi were correlated significantly. 

Conversely, urosepsis during PCNL can be 
catastrophic despite prophylactic antibiotic 
therapy and sterile preoperative urine.(20,21) Sepsis 
may seen in 0.3% to 2.5% of patients undergoing 
PCNL.(3,4) Vorrakitpokatorn and colleagues(12) 
reported septic shock in 4.7% of patients. There 
are various putative factors and variables that 
may predict the development of postoperative 
sepsis.(20) Bladder urine culture has been found 
to correlate poorly with infection in the upper 
urinary tract.(21) It has been postulated that 
bacteria in the calculus may be responsible for 
systemic infection. On the other hand, positive 
calculus culture and pelvic urine culture are better 
predictors of potential urosepsis than bladder 
urine. Therefore, routine collection of these 
specimens is recommended.(20) 

Finding pus during the performance of a PCNL 
should alert one to the possibility of sepsis, which 
can occur whether the procedure is completed 
in the same setting or in two stages.(7) Sepsis after 
PCNL indicates a poor technique with high 
pressure within the collecting system during 
manipulation. This problem can be avoided by 

using continuous flow instruments or an Amplatz 
sheath.(18,22) For this reason, we used Amplatz 
sheath in all of the patients in our study.

It is advised that all patients undergoing 
percutaneous procedures should have urine 
cultures preoperatively with the administration of 
an appropriate antibiotic to sterilize the urine.  
In a randomized prospective study, Inglis and 
Tolley showed that prophylactic antibiotic 
treatment reduced the incidence of UTI in 
patients with preoperative sterile urine who 
underwent PCNL (2% versus 12% with and 
without antibiotic prophylaxis, respectively).(23)  
Hosseini and colleagues(24) showed that when 
the urologist incidentally find purulent fluid in 
the puncture site, performing PCNL is possible 
with full antibiotic coverage in the same session. 
We also found prompt PCNL when purulent 
fluid is aspirated during the procedure is safe; 
however, there were factor such as fever, positive 
blood culture, and positive urine culture could 
potentially increase the length of hospitalization. 
We performed the procedure in selected patients 
with cloudy urine at the time of PCNL and the 
same-day PCNL was done considering factors 
mentioned above. We did not have any infection-
related complication. 

CONCLUSION
Same-day PCNL in patients with aspirated cloudy 
urine can be performed if a low pressure 30-F 
Amplatz sheath is used, increasing intrarenal 
pressure during the procedure is avoided, multiple 
tracts are obtained if needed, and good antibiotic 
coverage is considered. However, in patients with 
obstructing semiopaque calculi, leukocytosis, 
untreated recent UTI, and aspiration of thick 
or foul pus, it is safer to drain the urine through 
percutaneous nephrostomy tube alone and 
postpone PCNL to a later time. In the absence 
of the above factors, we do not face any 
uncontrollable complications with continuing 
PCNL, if the pyelocaliceal system is drained 
completely. However, regarding our small sample 
size, it seems that statistical powers of the test are 
not high enough. Therefore, large prospective 
studies with greater sample sizes are required to 
validate our conclusions.



Percutaneous Nephrolithotomy and Cloudy Urine—Etemadian et al

Urology Journal    Vol 5    No 1    Winter 2008 33

CONFLICT OF INTEREST
None declared.

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