id	sid	tid	token	lemma	pos
cord-002994-1zjrunzc	1	1	key	key	ADJ
cord-002994-1zjrunzc	1	2	:	:	PUNCT
cord-002994-1zjrunzc	1	3	cord-002994	cord-002994	NOUN
cord-002994-1zjrunzc	1	4	-	-	PUNCT
cord-002994-1zjrunzc	1	5	1zjrunzc	1zjrunzc	NUM
cord-002994-1zjrunzc	1	6	authors	author	NOUN
cord-002994-1zjrunzc	1	7	:	:	PUNCT
cord-002994-1zjrunzc	1	8	faye	faye	PROPN
cord-002994-1zjrunzc	1	9	,	,	PUNCT
cord-002994-1zjrunzc	1	10	martin	martin	PROPN
cord-002994-1zjrunzc	1	11	;	;	PUNCT
cord-002994-1zjrunzc	1	12	faye	faye	PROPN
cord-002994-1zjrunzc	1	13	,	,	PUNCT
cord-002994-1zjrunzc	1	14	oumar	oumar	PROPN
cord-002994-1zjrunzc	1	15	;	;	PUNCT
cord-002994-1zjrunzc	1	16	diagne	diagne	PROPN
cord-002994-1zjrunzc	1	17	,	,	PUNCT
cord-002994-1zjrunzc	1	18	moussa	moussa	PROPN
cord-002994-1zjrunzc	1	19	moise	moise	PROPN
cord-002994-1zjrunzc	1	20	;	;	PUNCT
cord-002994-1zjrunzc	1	21	fall	fall	NOUN
cord-002994-1zjrunzc	1	22	,	,	PUNCT
cord-002994-1zjrunzc	1	23	gamou	gamou	NOUN
cord-002994-1zjrunzc	1	24	;	;	PUNCT
cord-002994-1zjrunzc	1	25	weidmann	weidmann	PROPN
cord-002994-1zjrunzc	1	26	,	,	PUNCT
cord-002994-1zjrunzc	1	27	manfred	manfred	ADJ
cord-002994-1zjrunzc	1	28	;	;	PUNCT
cord-002994-1zjrunzc	1	29	sembene	sembene	PROPN
cord-002994-1zjrunzc	1	30	,	,	PUNCT
cord-002994-1zjrunzc	1	31	mbacke	mbacke	PROPN
cord-002994-1zjrunzc	1	32	;	;	PUNCT
cord-002994-1zjrunzc	1	33	sall	sall	PROPN
cord-002994-1zjrunzc	1	34	,	,	PUNCT
cord-002994-1zjrunzc	1	35	amadou	amadou	NOUN
cord-002994-1zjrunzc	1	36	alpha	alpha	NOUN
cord-002994-1zjrunzc	1	37	;	;	PUNCT
cord-002994-1zjrunzc	1	38	faye	faye	NOUN
cord-002994-1zjrunzc	1	39	,	,	PUNCT
cord-002994-1zjrunzc	1	40	ousmane	ousmane	ADJ
cord-002994-1zjrunzc	1	41	title	title	NOUN
cord-002994-1zjrunzc	1	42	:	:	PUNCT
cord-002994-1zjrunzc	1	43	full	full	ADJ
cord-002994-1zjrunzc	1	44	-	-	PUNCT
cord-002994-1zjrunzc	1	45	genome	genome	NOUN
cord-002994-1zjrunzc	1	46	characterization	characterization	NOUN
cord-002994-1zjrunzc	1	47	and	and	CCONJ
cord-002994-1zjrunzc	1	48	genetic	genetic	ADJ
cord-002994-1zjrunzc	1	49	evolution	evolution	NOUN
cord-002994-1zjrunzc	1	50	of	of	ADP
cord-002994-1zjrunzc	1	51	west	west	ADJ
cord-002994-1zjrunzc	1	52	african	african	ADJ
cord-002994-1zjrunzc	1	53	isolates	isolate	NOUN
cord-002994-1zjrunzc	1	54	of	of	ADP
cord-002994-1zjrunzc	1	55	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	1	56	virus	virus	PROPN
cord-002994-1zjrunzc	1	57	date	date	NOUN
cord-002994-1zjrunzc	1	58	:	:	PUNCT
cord-002994-1zjrunzc	1	59	2018	2018	NUM
cord-002994-1zjrunzc	1	60	-	-	SYM
cord-002994-1zjrunzc	1	61	04	04	NUM
cord-002994-1zjrunzc	1	62	-	-	SYM
cord-002994-1zjrunzc	1	63	13	13	NUM
cord-002994-1zjrunzc	1	64	journal	journal	NOUN
cord-002994-1zjrunzc	1	65	:	:	PUNCT
cord-002994-1zjrunzc	1	66	viruses	viruse	VERB
cord-002994-1zjrunzc	1	67	doi	doi	PROPN
cord-002994-1zjrunzc	1	68	:	:	PUNCT
cord-002994-1zjrunzc	1	69	10.3390	10.3390	NUM
cord-002994-1zjrunzc	1	70	/	/	SYM
cord-002994-1zjrunzc	1	71	v10040193	v10040193	NOUN
cord-002994-1zjrunzc	1	72	sha	shall	AUX
cord-002994-1zjrunzc	1	73	:	:	PUNCT
cord-002994-1zjrunzc	2	1	doc_id	doc_id	X
cord-002994-1zjrunzc	2	2	:	:	PUNCT
cord-002994-1zjrunzc	2	3	2994	2994	NUM
cord-002994-1zjrunzc	2	4	cord_uid	cord_uid	PROPN
cord-002994-1zjrunzc	2	5	:	:	PUNCT
cord-002994-1zjrunzc	2	6	1zjrunzc	1zjrunzc	NUM
cord-002994-1zjrunzc	2	7	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	2	8	virus	virus	PROPN
cord-002994-1zjrunzc	2	9	is	be	AUX
cord-002994-1zjrunzc	2	10	a	a	DET
cord-002994-1zjrunzc	2	11	mosquito	mosquito	NOUN
cord-002994-1zjrunzc	2	12	-	-	PUNCT
cord-002994-1zjrunzc	2	13	borne	bear	VERB
cord-002994-1zjrunzc	2	14	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	2	15	,	,	PUNCT
cord-002994-1zjrunzc	2	16	first	first	ADV
cord-002994-1zjrunzc	2	17	isolated	isolate	VERB
cord-002994-1zjrunzc	2	18	in	in	ADP
cord-002994-1zjrunzc	2	19	1966	1966	NUM
cord-002994-1zjrunzc	2	20	in	in	ADP
cord-002994-1zjrunzc	2	21	central	central	ADJ
cord-002994-1zjrunzc	2	22	african	african	ADJ
cord-002994-1zjrunzc	2	23	republic	republic	NOUN
cord-002994-1zjrunzc	2	24	.	.	PUNCT
cord-002994-1zjrunzc	3	1	it	it	PRON
cord-002994-1zjrunzc	3	2	has	have	AUX
cord-002994-1zjrunzc	3	3	currently	currently	ADV
cord-002994-1zjrunzc	3	4	been	be	AUX
cord-002994-1zjrunzc	3	5	identified	identify	VERB
cord-002994-1zjrunzc	3	6	in	in	ADP
cord-002994-1zjrunzc	3	7	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	3	8	pools	pool	NOUN
cord-002994-1zjrunzc	3	9	collected	collect	VERB
cord-002994-1zjrunzc	3	10	in	in	ADP
cord-002994-1zjrunzc	3	11	the	the	DET
cord-002994-1zjrunzc	3	12	field	field	NOUN
cord-002994-1zjrunzc	3	13	in	in	ADP
cord-002994-1zjrunzc	3	14	west	west	PROPN
cord-002994-1zjrunzc	3	15	and	and	CCONJ
cord-002994-1zjrunzc	3	16	central	central	PROPN
cord-002994-1zjrunzc	3	17	africa	africa	PROPN
cord-002994-1zjrunzc	3	18	.	.	PUNCT
cord-002994-1zjrunzc	4	1	emergence	emergence	NOUN
cord-002994-1zjrunzc	4	2	in	in	ADP
cord-002994-1zjrunzc	4	3	wild	wild	ADJ
cord-002994-1zjrunzc	4	4	birds	bird	NOUN
cord-002994-1zjrunzc	4	5	in	in	ADP
cord-002994-1zjrunzc	4	6	europe	europe	PROPN
cord-002994-1zjrunzc	4	7	and	and	CCONJ
cord-002994-1zjrunzc	4	8	serological	serological	ADJ
cord-002994-1zjrunzc	4	9	evidence	evidence	NOUN
cord-002994-1zjrunzc	4	10	in	in	ADP
cord-002994-1zjrunzc	4	11	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	4	12	patients	patient	NOUN
cord-002994-1zjrunzc	4	13	in	in	ADP
cord-002994-1zjrunzc	4	14	india	india	PROPN
cord-002994-1zjrunzc	4	15	raise	raise	VERB
cord-002994-1zjrunzc	4	16	questions	question	NOUN
cord-002994-1zjrunzc	4	17	on	on	ADP
cord-002994-1zjrunzc	4	18	its	its	PRON
cord-002994-1zjrunzc	4	19	genetic	genetic	ADJ
cord-002994-1zjrunzc	4	20	evolution	evolution	NOUN
cord-002994-1zjrunzc	4	21	and	and	CCONJ
cord-002994-1zjrunzc	4	22	the	the	DET
cord-002994-1zjrunzc	4	23	diversity	diversity	NOUN
cord-002994-1zjrunzc	4	24	of	of	ADP
cord-002994-1zjrunzc	4	25	isolates	isolate	NOUN
cord-002994-1zjrunzc	4	26	circulating	circulate	VERB
cord-002994-1zjrunzc	4	27	in	in	ADP
cord-002994-1zjrunzc	4	28	africa	africa	PROPN
cord-002994-1zjrunzc	4	29	.	.	PUNCT
cord-002994-1zjrunzc	5	1	to	to	PART
cord-002994-1zjrunzc	5	2	better	well	ADV
cord-002994-1zjrunzc	5	3	understand	understand	VERB
cord-002994-1zjrunzc	5	4	genetic	genetic	ADJ
cord-002994-1zjrunzc	5	5	diversity	diversity	NOUN
cord-002994-1zjrunzc	5	6	and	and	CCONJ
cord-002994-1zjrunzc	5	7	evolution	evolution	NOUN
cord-002994-1zjrunzc	5	8	of	of	ADP
cord-002994-1zjrunzc	5	9	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	5	10	virus	virus	PROPN
cord-002994-1zjrunzc	5	11	,	,	PUNCT
cord-002994-1zjrunzc	5	12	we	we	PRON
cord-002994-1zjrunzc	5	13	describe	describe	VERB
cord-002994-1zjrunzc	5	14	the	the	DET
cord-002994-1zjrunzc	5	15	full	full	ADJ
cord-002994-1zjrunzc	5	16	-	-	PUNCT
cord-002994-1zjrunzc	5	17	genome	genome	NOUN
cord-002994-1zjrunzc	5	18	characterization	characterization	NOUN
cord-002994-1zjrunzc	5	19	of	of	ADP
cord-002994-1zjrunzc	5	20	11	11	NUM
cord-002994-1zjrunzc	5	21	west	west	ADJ
cord-002994-1zjrunzc	5	22	african	african	ADJ
cord-002994-1zjrunzc	5	23	isolates	isolate	NOUN
cord-002994-1zjrunzc	5	24	,	,	PUNCT
cord-002994-1zjrunzc	5	25	sampled	sample	VERB
cord-002994-1zjrunzc	5	26	from	from	ADP
cord-002994-1zjrunzc	5	27	1988	1988	NUM
cord-002994-1zjrunzc	5	28	to	to	ADP
cord-002994-1zjrunzc	5	29	2014	2014	NUM
cord-002994-1zjrunzc	5	30	.	.	PUNCT
cord-002994-1zjrunzc	6	1	parameters	parameter	NOUN
cord-002994-1zjrunzc	6	2	such	such	ADJ
cord-002994-1zjrunzc	6	3	as	as	ADP
cord-002994-1zjrunzc	6	4	genetic	genetic	ADJ
cord-002994-1zjrunzc	6	5	distances	distance	NOUN
cord-002994-1zjrunzc	6	6	,	,	PUNCT
cord-002994-1zjrunzc	6	7	n	n	NOUN
cord-002994-1zjrunzc	6	8	-	-	PUNCT
cord-002994-1zjrunzc	6	9	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	6	10	patterns	pattern	NOUN
cord-002994-1zjrunzc	6	11	,	,	PUNCT
cord-002994-1zjrunzc	6	12	recombination	recombination	NOUN
cord-002994-1zjrunzc	6	13	events	event	NOUN
cord-002994-1zjrunzc	6	14	,	,	PUNCT
cord-002994-1zjrunzc	6	15	selective	selective	ADJ
cord-002994-1zjrunzc	6	16	pressures	pressure	NOUN
cord-002994-1zjrunzc	6	17	,	,	PUNCT
cord-002994-1zjrunzc	6	18	and	and	CCONJ
cord-002994-1zjrunzc	6	19	its	its	PRON
cord-002994-1zjrunzc	6	20	codon	codon	NOUN
cord-002994-1zjrunzc	6	21	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	6	22	to	to	ADP
cord-002994-1zjrunzc	6	23	human	human	ADJ
cord-002994-1zjrunzc	6	24	genes	gene	NOUN
cord-002994-1zjrunzc	6	25	are	be	AUX
cord-002994-1zjrunzc	6	26	assessed	assess	VERB
cord-002994-1zjrunzc	6	27	.	.	PUNCT
cord-002994-1zjrunzc	7	1	our	our	PRON
cord-002994-1zjrunzc	7	2	study	study	NOUN
cord-002994-1zjrunzc	7	3	is	be	AUX
cord-002994-1zjrunzc	7	4	noteworthy	noteworthy	ADJ
cord-002994-1zjrunzc	7	5	for	for	ADP
cord-002994-1zjrunzc	7	6	the	the	DET
cord-002994-1zjrunzc	7	7	observation	observation	NOUN
cord-002994-1zjrunzc	7	8	of	of	ADP
cord-002994-1zjrunzc	7	9	n	n	NOUN
cord-002994-1zjrunzc	7	10	-	-	PUNCT
cord-002994-1zjrunzc	7	11	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	7	12	and	and	CCONJ
cord-002994-1zjrunzc	7	13	recombination	recombination	NOUN
cord-002994-1zjrunzc	7	14	in	in	ADP
cord-002994-1zjrunzc	7	15	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	7	16	virus	virus	NOUN
cord-002994-1zjrunzc	7	17	and	and	CCONJ
cord-002994-1zjrunzc	7	18	provides	provide	VERB
cord-002994-1zjrunzc	7	19	insight	insight	NOUN
cord-002994-1zjrunzc	7	20	into	into	ADP
cord-002994-1zjrunzc	7	21	its	its	PRON
cord-002994-1zjrunzc	7	22	indian	indian	ADJ
cord-002994-1zjrunzc	7	23	origin	origin	NOUN
cord-002994-1zjrunzc	7	24	from	from	ADP
cord-002994-1zjrunzc	7	25	the	the	DET
cord-002994-1zjrunzc	7	26	13th	13th	ADJ
cord-002994-1zjrunzc	7	27	century	century	NOUN
cord-002994-1zjrunzc	7	28	.	.	PUNCT
cord-002994-1zjrunzc	8	1	interestingly	interestingly	ADV
cord-002994-1zjrunzc	8	2	,	,	PUNCT
cord-002994-1zjrunzc	8	3	evidence	evidence	NOUN
cord-002994-1zjrunzc	8	4	of	of	ADP
cord-002994-1zjrunzc	8	5	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	8	6	virus	virus	PROPN
cord-002994-1zjrunzc	8	7	codon	codon	PROPN
cord-002994-1zjrunzc	8	8	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	8	9	to	to	ADP
cord-002994-1zjrunzc	8	10	human	human	PROPN
cord-002994-1zjrunzc	8	11	house	house	NOUN
cord-002994-1zjrunzc	8	12	-	-	PUNCT
cord-002994-1zjrunzc	8	13	keeping	keep	VERB
cord-002994-1zjrunzc	8	14	genes	gene	NOUN
cord-002994-1zjrunzc	8	15	is	be	AUX
cord-002994-1zjrunzc	8	16	also	also	ADV
cord-002994-1zjrunzc	8	17	observed	observe	VERB
cord-002994-1zjrunzc	8	18	to	to	PART
cord-002994-1zjrunzc	8	19	be	be	AUX
cord-002994-1zjrunzc	8	20	higher	high	ADJ
cord-002994-1zjrunzc	8	21	than	than	ADP
cord-002994-1zjrunzc	8	22	those	those	PRON
cord-002994-1zjrunzc	8	23	of	of	ADP
cord-002994-1zjrunzc	8	24	other	other	ADJ
cord-002994-1zjrunzc	8	25	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	8	26	well	well	ADV
cord-002994-1zjrunzc	8	27	known	know	VERB
cord-002994-1zjrunzc	8	28	in	in	ADP
cord-002994-1zjrunzc	8	29	human	human	ADJ
cord-002994-1zjrunzc	8	30	infections	infection	NOUN
cord-002994-1zjrunzc	8	31	.	.	PUNCT
cord-002994-1zjrunzc	9	1	genetic	genetic	ADJ
cord-002994-1zjrunzc	9	2	variations	variation	NOUN
cord-002994-1zjrunzc	9	3	on	on	ADP
cord-002994-1zjrunzc	9	4	genome	genome	NOUN
cord-002994-1zjrunzc	9	5	of	of	ADP
cord-002994-1zjrunzc	9	6	west	west	PROPN
cord-002994-1zjrunzc	9	7	african	african	PROPN
cord-002994-1zjrunzc	9	8	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	9	9	virus	virus	PROPN
cord-002994-1zjrunzc	9	10	could	could	AUX
cord-002994-1zjrunzc	9	11	play	play	VERB
cord-002994-1zjrunzc	9	12	an	an	DET
cord-002994-1zjrunzc	9	13	important	important	ADJ
cord-002994-1zjrunzc	9	14	role	role	NOUN
cord-002994-1zjrunzc	9	15	in	in	ADP
cord-002994-1zjrunzc	9	16	generating	generate	VERB
cord-002994-1zjrunzc	9	17	diversity	diversity	NOUN
cord-002994-1zjrunzc	9	18	and	and	CCONJ
cord-002994-1zjrunzc	9	19	may	may	AUX
cord-002994-1zjrunzc	9	20	promote	promote	VERB
cord-002994-1zjrunzc	9	21	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	9	22	virus	virus	PROPN
cord-002994-1zjrunzc	9	23	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	9	24	to	to	ADP
cord-002994-1zjrunzc	9	25	other	other	ADJ
cord-002994-1zjrunzc	9	26	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	9	27	and	and	CCONJ
cord-002994-1zjrunzc	9	28	become	become	VERB
cord-002994-1zjrunzc	9	29	an	an	DET
cord-002994-1zjrunzc	9	30	important	important	ADJ
cord-002994-1zjrunzc	9	31	threat	threat	NOUN
cord-002994-1zjrunzc	9	32	in	in	ADP
cord-002994-1zjrunzc	9	33	human	human	ADJ
cord-002994-1zjrunzc	9	34	health	health	NOUN
cord-002994-1zjrunzc	9	35	.	.	PUNCT
cord-002994-1zjrunzc	10	1	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	10	2	virus	virus	PROPN
cord-002994-1zjrunzc	10	3	(	(	PUNCT
cord-002994-1zjrunzc	10	4	bagv	bagv	PROPN
cord-002994-1zjrunzc	10	5	)	)	PUNCT
cord-002994-1zjrunzc	10	6	belongs	belong	VERB
cord-002994-1zjrunzc	10	7	to	to	ADP
cord-002994-1zjrunzc	10	8	the	the	DET
cord-002994-1zjrunzc	10	9	flaviridae	flaviridae	PROPN
cord-002994-1zjrunzc	10	10	family	family	NOUN
cord-002994-1zjrunzc	10	11	,	,	PUNCT
cord-002994-1zjrunzc	10	12	flavivirus	flavivirus	PROPN
cord-002994-1zjrunzc	10	13	genus	genus	PROPN
cord-002994-1zjrunzc	10	14	and	and	CCONJ
cord-002994-1zjrunzc	10	15	ntaya	ntaya	PROPN
cord-002994-1zjrunzc	10	16	serological	serological	ADJ
cord-002994-1zjrunzc	10	17	group	group	NOUN
cord-002994-1zjrunzc	10	18	.	.	PUNCT
cord-002994-1zjrunzc	11	1	bagv	bagv	PROPN
cord-002994-1zjrunzc	11	2	is	be	AUX
cord-002994-1zjrunzc	11	3	a	a	DET
cord-002994-1zjrunzc	11	4	mosquito	mosquito	ADJ
cord-002994-1zjrunzc	11	5	-	-	PUNCT
cord-002994-1zjrunzc	11	6	transmitted	transmit	VERB
cord-002994-1zjrunzc	11	7	virus	virus	NOUN
cord-002994-1zjrunzc	11	8	,	,	PUNCT
cord-002994-1zjrunzc	11	9	which	which	PRON
cord-002994-1zjrunzc	11	10	was	be	AUX
cord-002994-1zjrunzc	11	11	first	first	ADV
cord-002994-1zjrunzc	11	12	isolated	isolate	VERB
cord-002994-1zjrunzc	11	13	in	in	ADP
cord-002994-1zjrunzc	11	14	the	the	DET
cord-002994-1zjrunzc	11	15	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	11	16	district	district	NOUN
cord-002994-1zjrunzc	11	17	of	of	ADP
cord-002994-1zjrunzc	11	18	the	the	DET
cord-002994-1zjrunzc	11	19	central	central	ADJ
cord-002994-1zjrunzc	11	20	african	african	ADJ
cord-002994-1zjrunzc	11	21	republic	republic	NOUN
cord-002994-1zjrunzc	11	22	(	(	PUNCT
cord-002994-1zjrunzc	11	23	car	car	NOUN
cord-002994-1zjrunzc	11	24	)	)	PUNCT
cord-002994-1zjrunzc	11	25	,	,	PUNCT
cord-002994-1zjrunzc	11	26	in	in	ADP
cord-002994-1zjrunzc	11	27	1966	1966	NUM
cord-002994-1zjrunzc	11	28	,	,	PUNCT
cord-002994-1zjrunzc	11	29	from	from	ADP
cord-002994-1zjrunzc	11	30	a	a	DET
cord-002994-1zjrunzc	11	31	pool	pool	NOUN
cord-002994-1zjrunzc	11	32	of	of	ADP
cord-002994-1zjrunzc	11	33	mixed	mixed	ADJ
cord-002994-1zjrunzc	11	34	-	-	PUNCT
cord-002994-1zjrunzc	11	35	species	species	NOUN
cord-002994-1zjrunzc	11	36	female	female	NOUN
cord-002994-1zjrunzc	11	37	culex	culex	PROPN
cord-002994-1zjrunzc	11	38	spp	spp	PROPN
cord-002994-1zjrunzc	11	39	.	.	PUNCT
cord-002994-1zjrunzc	11	40	mosquitoes	mosquitoes	PROPN
cord-002994-1zjrunzc	11	41	during	during	ADP
cord-002994-1zjrunzc	11	42	entomological	entomological	ADJ
cord-002994-1zjrunzc	11	43	investigations	investigation	NOUN
cord-002994-1zjrunzc	12	1	[	[	X
cord-002994-1zjrunzc	12	2	1	1	NUM
cord-002994-1zjrunzc	12	3	]	]	PUNCT
cord-002994-1zjrunzc	12	4	.	.	PUNCT
cord-002994-1zjrunzc	13	1	as	as	SCONJ
cord-002994-1zjrunzc	13	2	is	be	AUX
cord-002994-1zjrunzc	13	3	characteristic	characteristic	ADJ
cord-002994-1zjrunzc	13	4	of	of	ADP
cord-002994-1zjrunzc	13	5	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	13	6	,	,	PUNCT
cord-002994-1zjrunzc	13	7	bagv	bagv	PROPN
cord-002994-1zjrunzc	13	8	possesses	possess	VERB
cord-002994-1zjrunzc	13	9	a	a	DET
cord-002994-1zjrunzc	13	10	linear	linear	ADJ
cord-002994-1zjrunzc	13	11	single	single	ADV
cord-002994-1zjrunzc	13	12	-	-	PUNCT
cord-002994-1zjrunzc	13	13	stranded	strand	VERB
cord-002994-1zjrunzc	13	14	,	,	PUNCT
cord-002994-1zjrunzc	13	15	positive	positive	ADJ
cord-002994-1zjrunzc	13	16	-	-	PUNCT
cord-002994-1zjrunzc	13	17	sense	sense	NOUN
cord-002994-1zjrunzc	13	18	rna	rna	NOUN
cord-002994-1zjrunzc	13	19	genome	genome	NOUN
cord-002994-1zjrunzc	13	20	[	[	X
cord-002994-1zjrunzc	13	21	2	2	NUM
cord-002994-1zjrunzc	13	22	]	]	PUNCT
cord-002994-1zjrunzc	13	23	.	.	PUNCT
cord-002994-1zjrunzc	14	1	the	the	DET
cord-002994-1zjrunzc	14	2	bagv	bagv	PROPN
cord-002994-1zjrunzc	14	3	genome	genome	NOUN
cord-002994-1zjrunzc	14	4	is	be	AUX
cord-002994-1zjrunzc	14	5	10,941	10,941	NUM
cord-002994-1zjrunzc	14	6	nucleotides	nucleotide	NOUN
cord-002994-1zjrunzc	14	7	in	in	ADP
cord-002994-1zjrunzc	14	8	length	length	NOUN
cord-002994-1zjrunzc	14	9	,	,	PUNCT
cord-002994-1zjrunzc	14	10	encoding	encode	VERB
cord-002994-1zjrunzc	14	11	a	a	DET
cord-002994-1zjrunzc	14	12	single	single	ADJ
cord-002994-1zjrunzc	14	13	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	14	14	(	(	PUNCT
cord-002994-1zjrunzc	14	15	3426	3426	NUM
cord-002994-1zjrunzc	14	16	amino	amino	NOUN
cord-002994-1zjrunzc	14	17	acids	acid	NOUN
cord-002994-1zjrunzc	14	18	)	)	PUNCT
cord-002994-1zjrunzc	14	19	from	from	ADP
cord-002994-1zjrunzc	14	20	which	which	PRON
cord-002994-1zjrunzc	14	21	11	11	NUM
cord-002994-1zjrunzc	14	22	viral	viral	ADJ
cord-002994-1zjrunzc	14	23	proteins	protein	NOUN
cord-002994-1zjrunzc	14	24	are	be	AUX
cord-002994-1zjrunzc	14	25	derived	derive	VERB
cord-002994-1zjrunzc	14	26	,	,	PUNCT
cord-002994-1zjrunzc	14	27	and	and	CCONJ
cord-002994-1zjrunzc	14	28	flanked	flank	VERB
cord-002994-1zjrunzc	14	29	by	by	ADP
cord-002994-1zjrunzc	14	30	5	5	NUM
cord-002994-1zjrunzc	14	31	and	and	CCONJ
cord-002994-1zjrunzc	14	32	3	3	NUM
cord-002994-1zjrunzc	14	33	untranslated	untranslated	ADJ
cord-002994-1zjrunzc	14	34	regions	region	NOUN
cord-002994-1zjrunzc	14	35	(	(	PUNCT
cord-002994-1zjrunzc	14	36	utrs	utrs	PROPN
cord-002994-1zjrunzc	14	37	)	)	PUNCT
cord-002994-1zjrunzc	14	38	of	of	ADP
cord-002994-1zjrunzc	14	39	94	94	NUM
cord-002994-1zjrunzc	14	40	and	and	CCONJ
cord-002994-1zjrunzc	14	41	556	556	NUM
cord-002994-1zjrunzc	14	42	nt	not	PART
cord-002994-1zjrunzc	14	43	,	,	PUNCT
cord-002994-1zjrunzc	14	44	respectively	respectively	ADV
cord-002994-1zjrunzc	14	45	[	[	X
cord-002994-1zjrunzc	14	46	3	3	NUM
cord-002994-1zjrunzc	14	47	]	]	PUNCT
cord-002994-1zjrunzc	14	48	.	.	PUNCT
cord-002994-1zjrunzc	15	1	bagv	bagv	PROPN
cord-002994-1zjrunzc	15	2	has	have	AUX
cord-002994-1zjrunzc	15	3	been	be	AUX
cord-002994-1zjrunzc	15	4	isolated	isolate	VERB
cord-002994-1zjrunzc	15	5	repeatedly	repeatedly	ADV
cord-002994-1zjrunzc	15	6	with	with	ADP
cord-002994-1zjrunzc	15	7	a	a	DET
cord-002994-1zjrunzc	15	8	high	high	ADJ
cord-002994-1zjrunzc	15	9	titer	titer	NOUN
cord-002994-1zjrunzc	15	10	from	from	ADP
cord-002994-1zjrunzc	15	11	different	different	ADJ
cord-002994-1zjrunzc	15	12	species	specie	NOUN
cord-002994-1zjrunzc	15	13	of	of	ADP
cord-002994-1zjrunzc	15	14	mosquitoes	mosquito	NOUN
cord-002994-1zjrunzc	15	15	in	in	ADP
cord-002994-1zjrunzc	15	16	central	central	ADJ
cord-002994-1zjrunzc	15	17	and	and	CCONJ
cord-002994-1zjrunzc	15	18	west	west	ADJ
cord-002994-1zjrunzc	15	19	african	african	ADJ
cord-002994-1zjrunzc	15	20	countries	country	NOUN
cord-002994-1zjrunzc	15	21	[	[	X
cord-002994-1zjrunzc	15	22	4	4	NUM
cord-002994-1zjrunzc	15	23	]	]	PUNCT
cord-002994-1zjrunzc	15	24	[	[	X
cord-002994-1zjrunzc	15	25	5	5	NUM
cord-002994-1zjrunzc	15	26	]	]	PUNCT
cord-002994-1zjrunzc	15	27	[	[	X
cord-002994-1zjrunzc	15	28	6	6	NUM
cord-002994-1zjrunzc	15	29	]	]	PUNCT
cord-002994-1zjrunzc	15	30	,	,	PUNCT
cord-002994-1zjrunzc	15	31	and	and	CCONJ
cord-002994-1zjrunzc	15	32	in	in	ADP
cord-002994-1zjrunzc	15	33	india	india	PROPN
cord-002994-1zjrunzc	15	34	,	,	PUNCT
cord-002994-1zjrunzc	15	35	where	where	SCONJ
cord-002994-1zjrunzc	15	36	serological	serological	ADJ
cord-002994-1zjrunzc	15	37	investigations	investigation	NOUN
cord-002994-1zjrunzc	15	38	suggested	suggest	VERB
cord-002994-1zjrunzc	15	39	subclinical	subclinical	ADJ
cord-002994-1zjrunzc	15	40	infections	infection	NOUN
cord-002994-1zjrunzc	15	41	in	in	ADP
cord-002994-1zjrunzc	15	42	humans	human	NOUN
cord-002994-1zjrunzc	15	43	[	[	PUNCT
cord-002994-1zjrunzc	15	44	7	7	NUM
cord-002994-1zjrunzc	15	45	,	,	PUNCT
cord-002994-1zjrunzc	15	46	8	8	NUM
cord-002994-1zjrunzc	15	47	]	]	PUNCT
cord-002994-1zjrunzc	15	48	.	.	PUNCT
cord-002994-1zjrunzc	16	1	despite	despite	SCONJ
cord-002994-1zjrunzc	16	2	this	this	DET
cord-002994-1zjrunzc	16	3	widespread	widespread	ADJ
cord-002994-1zjrunzc	16	4	circulation	circulation	NOUN
cord-002994-1zjrunzc	16	5	of	of	ADP
cord-002994-1zjrunzc	16	6	bagv	bagv	NOUN
cord-002994-1zjrunzc	16	7	,	,	PUNCT
cord-002994-1zjrunzc	16	8	outbreaks	outbreak	NOUN
cord-002994-1zjrunzc	16	9	involving	involve	VERB
cord-002994-1zjrunzc	16	10	humans	human	NOUN
cord-002994-1zjrunzc	16	11	or	or	CCONJ
cord-002994-1zjrunzc	16	12	animals	animal	NOUN
cord-002994-1zjrunzc	16	13	have	have	AUX
cord-002994-1zjrunzc	16	14	not	not	PART
cord-002994-1zjrunzc	16	15	yet	yet	ADV
cord-002994-1zjrunzc	16	16	been	be	AUX
cord-002994-1zjrunzc	16	17	reported	report	VERB
cord-002994-1zjrunzc	16	18	from	from	ADP
cord-002994-1zjrunzc	16	19	these	these	DET
cord-002994-1zjrunzc	16	20	countries	country	NOUN
cord-002994-1zjrunzc	16	21	.	.	PUNCT
cord-002994-1zjrunzc	17	1	subsequently	subsequently	ADV
cord-002994-1zjrunzc	17	2	,	,	PUNCT
cord-002994-1zjrunzc	17	3	in	in	ADP
cord-002994-1zjrunzc	17	4	september	september	PROPN
cord-002994-1zjrunzc	17	5	2010	2010	NUM
cord-002994-1zjrunzc	17	6	,	,	PUNCT
cord-002994-1zjrunzc	17	7	bagv	bagv	PROPN
cord-002994-1zjrunzc	17	8	was	be	AUX
cord-002994-1zjrunzc	17	9	associated	associate	VERB
cord-002994-1zjrunzc	17	10	with	with	ADP
cord-002994-1zjrunzc	17	11	a	a	DET
cord-002994-1zjrunzc	17	12	high	high	ADJ
cord-002994-1zjrunzc	17	13	mortality	mortality	NOUN
cord-002994-1zjrunzc	17	14	among	among	ADP
cord-002994-1zjrunzc	17	15	game	game	NOUN
cord-002994-1zjrunzc	17	16	birds	bird	NOUN
cord-002994-1zjrunzc	17	17	(	(	PUNCT
cord-002994-1zjrunzc	17	18	partridges	partridge	NOUN
cord-002994-1zjrunzc	17	19	and	and	CCONJ
cord-002994-1zjrunzc	17	20	pheasants	pheasant	NOUN
cord-002994-1zjrunzc	17	21	)	)	PUNCT
cord-002994-1zjrunzc	17	22	in	in	ADP
cord-002994-1zjrunzc	17	23	southern	southern	PROPN
cord-002994-1zjrunzc	17	24	spain	spain	PROPN
cord-002994-1zjrunzc	17	25	,	,	PUNCT
cord-002994-1zjrunzc	17	26	the	the	DET
cord-002994-1zjrunzc	17	27	first	first	ADJ
cord-002994-1zjrunzc	17	28	detection	detection	NOUN
cord-002994-1zjrunzc	17	29	of	of	ADP
cord-002994-1zjrunzc	17	30	bagv	bagv	PROPN
cord-002994-1zjrunzc	17	31	in	in	ADP
cord-002994-1zjrunzc	17	32	europe	europe	PROPN
cord-002994-1zjrunzc	17	33	and	and	CCONJ
cord-002994-1zjrunzc	17	34	the	the	DET
cord-002994-1zjrunzc	17	35	first	first	ADJ
cord-002994-1zjrunzc	17	36	isolation	isolation	NOUN
cord-002994-1zjrunzc	17	37	from	from	ADP
cord-002994-1zjrunzc	17	38	a	a	DET
cord-002994-1zjrunzc	17	39	vertebrate	vertebrate	ADJ
cord-002994-1zjrunzc	17	40	host	host	NOUN
cord-002994-1zjrunzc	17	41	[	[	PUNCT
cord-002994-1zjrunzc	17	42	9	9	NUM
cord-002994-1zjrunzc	17	43	,	,	PUNCT
cord-002994-1zjrunzc	17	44	10	10	NUM
cord-002994-1zjrunzc	17	45	]	]	PUNCT
cord-002994-1zjrunzc	17	46	.	.	PUNCT
cord-002994-1zjrunzc	18	1	however	however	ADV
cord-002994-1zjrunzc	18	2	,	,	PUNCT
cord-002994-1zjrunzc	18	3	it	it	PRON
cord-002994-1zjrunzc	18	4	is	be	AUX
cord-002994-1zjrunzc	18	5	not	not	PART
cord-002994-1zjrunzc	18	6	surprising	surprising	ADJ
cord-002994-1zjrunzc	18	7	that	that	SCONJ
cord-002994-1zjrunzc	18	8	bagv	bagv	PROPN
cord-002994-1zjrunzc	18	9	infects	infect	VERB
cord-002994-1zjrunzc	18	10	birds	bird	NOUN
cord-002994-1zjrunzc	18	11	since	since	SCONJ
cord-002994-1zjrunzc	18	12	it	it	PRON
cord-002994-1zjrunzc	18	13	has	have	AUX
cord-002994-1zjrunzc	18	14	been	be	AUX
cord-002994-1zjrunzc	18	15	shown	show	VERB
cord-002994-1zjrunzc	18	16	to	to	PART
cord-002994-1zjrunzc	18	17	be	be	AUX
cord-002994-1zjrunzc	18	18	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	18	19	with	with	ADP
cord-002994-1zjrunzc	18	20	israel	israel	PROPN
cord-002994-1zjrunzc	18	21	turkey	turkey	PROPN
cord-002994-1zjrunzc	18	22	all	all	DET
cord-002994-1zjrunzc	18	23	11	11	NUM
cord-002994-1zjrunzc	18	24	virus	virus	NOUN
cord-002994-1zjrunzc	18	25	strains	strain	NOUN
cord-002994-1zjrunzc	18	26	analyzed	analyze	VERB
cord-002994-1zjrunzc	18	27	in	in	ADP
cord-002994-1zjrunzc	18	28	this	this	DET
cord-002994-1zjrunzc	18	29	study	study	NOUN
cord-002994-1zjrunzc	18	30	were	be	AUX
cord-002994-1zjrunzc	18	31	derived	derive	VERB
cord-002994-1zjrunzc	18	32	from	from	ADP
cord-002994-1zjrunzc	18	33	the	the	DET
cord-002994-1zjrunzc	18	34	who	who	PRON
cord-002994-1zjrunzc	18	35	collaborating	collaborate	VERB
cord-002994-1zjrunzc	18	36	center	center	NOUN
cord-002994-1zjrunzc	18	37	(	(	PUNCT
cord-002994-1zjrunzc	18	38	http://apps.who.int/whocc/detail.aspx?cc_ref=sen-5&cc_code=sen	http://apps.who.int/whocc/detail.aspx?cc_ref=sen-5&cc_code=sen	PROPN
cord-002994-1zjrunzc	18	39	)	)	PUNCT
cord-002994-1zjrunzc	18	40	for	for	ADP
cord-002994-1zjrunzc	18	41	arboviruses	arbovirus	NOUN
cord-002994-1zjrunzc	18	42	and	and	CCONJ
cord-002994-1zjrunzc	18	43	viral	viral	ADJ
cord-002994-1zjrunzc	18	44	hemorrhagic	hemorrhagic	ADJ
cord-002994-1zjrunzc	18	45	viruses	virus	NOUN
cord-002994-1zjrunzc	18	46	in	in	ADP
cord-002994-1zjrunzc	18	47	senegal	senegal	PROPN
cord-002994-1zjrunzc	18	48	at	at	ADP
cord-002994-1zjrunzc	18	49	institut	institut	PROPN
cord-002994-1zjrunzc	18	50	pasteur	pasteur	PROPN
cord-002994-1zjrunzc	18	51	de	de	X
cord-002994-1zjrunzc	18	52	dakar	dakar	NOUN
cord-002994-1zjrunzc	18	53	(	(	PUNCT
cord-002994-1zjrunzc	18	54	dakar	dakar	X
cord-002994-1zjrunzc	18	55	,	,	PUNCT
cord-002994-1zjrunzc	18	56	senegal	senegal	PROPN
cord-002994-1zjrunzc	18	57	)	)	PUNCT
cord-002994-1zjrunzc	18	58	(	(	PUNCT
cord-002994-1zjrunzc	18	59	table	table	NOUN
cord-002994-1zjrunzc	18	60	2	2	NUM
cord-002994-1zjrunzc	18	61	)	)	PUNCT
cord-002994-1zjrunzc	18	62	.	.	PUNCT
cord-002994-1zjrunzc	19	1	viral	viral	ADJ
cord-002994-1zjrunzc	19	2	stocks	stock	NOUN
cord-002994-1zjrunzc	19	3	were	be	AUX
cord-002994-1zjrunzc	19	4	prepared	prepare	VERB
cord-002994-1zjrunzc	19	5	by	by	ADP
cord-002994-1zjrunzc	19	6	inoculating	inoculate	VERB
cord-002994-1zjrunzc	19	7	viral	viral	ADJ
cord-002994-1zjrunzc	19	8	strains	strain	NOUN
cord-002994-1zjrunzc	19	9	into	into	ADP
cord-002994-1zjrunzc	19	10	aedes	aedes	PROPN
cord-002994-1zjrunzc	19	11	albopictus	albopictus	NOUN
cord-002994-1zjrunzc	19	12	(	(	PUNCT
cord-002994-1zjrunzc	19	13	c6/36	c6/36	PROPN
cord-002994-1zjrunzc	19	14	)	)	PUNCT
cord-002994-1zjrunzc	19	15	cell	cell	NOUN
cord-002994-1zjrunzc	19	16	line	line	NOUN
cord-002994-1zjrunzc	19	17	in	in	ADP
cord-002994-1zjrunzc	19	18	leibovitz	leibovitz	PROPN
cord-002994-1zjrunzc	19	19	15	15	NUM
cord-002994-1zjrunzc	19	20	(	(	PUNCT
cord-002994-1zjrunzc	19	21	l-15	l-15	ADJ
cord-002994-1zjrunzc	19	22	)	)	PUNCT
cord-002994-1zjrunzc	19	23	growth	growth	NOUN
cord-002994-1zjrunzc	19	24	medium	medium	NOUN
cord-002994-1zjrunzc	19	25	viruses	virus	NOUN
cord-002994-1zjrunzc	19	26	2018	2018	NUM
cord-002994-1zjrunzc	19	27	,	,	PUNCT
cord-002994-1zjrunzc	19	28	10	10	NUM
cord-002994-1zjrunzc	19	29	,	,	PUNCT
cord-002994-1zjrunzc	19	30	193	193	NUM
cord-002994-1zjrunzc	19	31	3	3	NUM
cord-002994-1zjrunzc	19	32	of	of	ADP
cord-002994-1zjrunzc	19	33	26	26	NUM
cord-002994-1zjrunzc	19	34	(	(	PUNCT
cord-002994-1zjrunzc	19	35	gibcobrl	gibcobrl	PROPN
cord-002994-1zjrunzc	19	36	,	,	PUNCT
cord-002994-1zjrunzc	19	37	grand	grand	ADJ
cord-002994-1zjrunzc	19	38	island	island	NOUN
cord-002994-1zjrunzc	19	39	,	,	PUNCT
cord-002994-1zjrunzc	19	40	ny	ny	PROPN
cord-002994-1zjrunzc	19	41	,	,	PUNCT
cord-002994-1zjrunzc	19	42	usa	usa	PROPN
cord-002994-1zjrunzc	19	43	)	)	PUNCT
cord-002994-1zjrunzc	19	44	supplemented	supplement	VERB
cord-002994-1zjrunzc	19	45	with	with	ADP
cord-002994-1zjrunzc	19	46	5	5	NUM
cord-002994-1zjrunzc	19	47	%	%	NOUN
cord-002994-1zjrunzc	19	48	fetal	fetal	ADJ
cord-002994-1zjrunzc	19	49	bovine	bovine	NOUN
cord-002994-1zjrunzc	19	50	serum	serum	NOUN
cord-002994-1zjrunzc	19	51	(	(	PUNCT
cord-002994-1zjrunzc	19	52	fbs	fbs	ADJ
cord-002994-1zjrunzc	19	53	)	)	PUNCT
cord-002994-1zjrunzc	19	54	(	(	PUNCT
cord-002994-1zjrunzc	19	55	gibcobrl	gibcobrl	PROPN
cord-002994-1zjrunzc	19	56	,	,	PUNCT
cord-002994-1zjrunzc	19	57	grand	grand	ADJ
cord-002994-1zjrunzc	19	58	island	island	NOUN
cord-002994-1zjrunzc	19	59	,	,	PUNCT
cord-002994-1zjrunzc	19	60	ny	ny	PROPN
cord-002994-1zjrunzc	19	61	,	,	PUNCT
cord-002994-1zjrunzc	19	62	usa	usa	PROPN
cord-002994-1zjrunzc	19	63	)	)	PUNCT
cord-002994-1zjrunzc	19	64	,	,	PUNCT
cord-002994-1zjrunzc	19	65	10	10	NUM
cord-002994-1zjrunzc	19	66	%	%	NOUN
cord-002994-1zjrunzc	19	67	tryptose	tryptose	NOUN
cord-002994-1zjrunzc	19	68	phosphate	phosphate	NOUN
cord-002994-1zjrunzc	19	69	and	and	CCONJ
cord-002994-1zjrunzc	19	70	antibiotics	antibiotic	NOUN
cord-002994-1zjrunzc	19	71	(	(	PUNCT
cord-002994-1zjrunzc	19	72	sigma	sigma	PROPN
cord-002994-1zjrunzc	19	73	,	,	PUNCT
cord-002994-1zjrunzc	19	74	gmbh	gmbh	PROPN
cord-002994-1zjrunzc	19	75	,	,	PUNCT
cord-002994-1zjrunzc	19	76	germany	germany	PROPN
cord-002994-1zjrunzc	19	77	)	)	PUNCT
cord-002994-1zjrunzc	19	78	.	.	PUNCT
cord-002994-1zjrunzc	20	1	bagv	bagv	PROPN
cord-002994-1zjrunzc	20	2	infection	infection	PROPN
cord-002994-1zjrunzc	20	3	was	be	AUX
cord-002994-1zjrunzc	20	4	confirmed	confirm	VERB
cord-002994-1zjrunzc	20	5	after	after	ADP
cord-002994-1zjrunzc	20	6	4	4	NUM
cord-002994-1zjrunzc	20	7	days	day	NOUN
cord-002994-1zjrunzc	20	8	of	of	ADP
cord-002994-1zjrunzc	20	9	propagation	propagation	NOUN
cord-002994-1zjrunzc	20	10	by	by	ADP
cord-002994-1zjrunzc	20	11	immunofluorescence	immunofluorescence	NOUN
cord-002994-1zjrunzc	20	12	assay	assay	PROPN
cord-002994-1zjrunzc	20	13	(	(	PUNCT
cord-002994-1zjrunzc	20	14	ifa	ifa	PROPN
cord-002994-1zjrunzc	20	15	)	)	PUNCT
cord-002994-1zjrunzc	20	16	using	use	VERB
cord-002994-1zjrunzc	20	17	specific	specific	ADJ
cord-002994-1zjrunzc	20	18	hyper	hyper	ADJ
cord-002994-1zjrunzc	20	19	-	-	ADJ
cord-002994-1zjrunzc	20	20	immune	immune	ADJ
cord-002994-1zjrunzc	20	21	mouse	mouse	NOUN
cord-002994-1zjrunzc	20	22	ascitic	ascitic	ADJ
cord-002994-1zjrunzc	20	23	fluid	fluid	NOUN
cord-002994-1zjrunzc	20	24	,	,	PUNCT
cord-002994-1zjrunzc	20	25	as	as	SCONJ
cord-002994-1zjrunzc	20	26	previously	previously	ADV
cord-002994-1zjrunzc	20	27	described	describe	VERB
cord-002994-1zjrunzc	20	28	[	[	X
cord-002994-1zjrunzc	20	29	15	15	NUM
cord-002994-1zjrunzc	20	30	]	]	PUNCT
cord-002994-1zjrunzc	20	31	.	.	PUNCT
cord-002994-1zjrunzc	21	1	cultures	culture	NOUN
cord-002994-1zjrunzc	21	2	supernatants	supernatant	NOUN
cord-002994-1zjrunzc	21	3	were	be	AUX
cord-002994-1zjrunzc	21	4	collected	collect	VERB
cord-002994-1zjrunzc	21	5	for	for	ADP
cord-002994-1zjrunzc	21	6	virus	virus	NOUN
cord-002994-1zjrunzc	21	7	rna	rna	PROPN
cord-002994-1zjrunzc	21	8	isolation	isolation	NOUN
cord-002994-1zjrunzc	21	9	.	.	PUNCT
cord-002994-1zjrunzc	22	1	extraction	extraction	NOUN
cord-002994-1zjrunzc	22	2	of	of	ADP
cord-002994-1zjrunzc	22	3	viral	viral	ADJ
cord-002994-1zjrunzc	22	4	rna	rna	NOUN
cord-002994-1zjrunzc	22	5	from	from	ADP
cord-002994-1zjrunzc	22	6	supernatants	supernatant	NOUN
cord-002994-1zjrunzc	22	7	was	be	AUX
cord-002994-1zjrunzc	22	8	performed	perform	VERB
cord-002994-1zjrunzc	22	9	with	with	ADP
cord-002994-1zjrunzc	22	10	the	the	DET
cord-002994-1zjrunzc	22	11	qiaamp	qiaamp	ADJ
cord-002994-1zjrunzc	22	12	viral	viral	ADJ
cord-002994-1zjrunzc	22	13	rna	rna	PROPN
cord-002994-1zjrunzc	22	14	mini	mini	NOUN
cord-002994-1zjrunzc	22	15	kit	kit	NOUN
cord-002994-1zjrunzc	22	16	(	(	PUNCT
cord-002994-1zjrunzc	22	17	qiagen	qiagen	PROPN
cord-002994-1zjrunzc	22	18	,	,	PUNCT
cord-002994-1zjrunzc	22	19	heiden	heiden	PROPN
cord-002994-1zjrunzc	22	20	,	,	PUNCT
cord-002994-1zjrunzc	22	21	germany	germany	PROPN
cord-002994-1zjrunzc	22	22	)	)	PUNCT
cord-002994-1zjrunzc	22	23	according	accord	VERB
cord-002994-1zjrunzc	22	24	to	to	ADP
cord-002994-1zjrunzc	22	25	manufacturer	manufacturer	NOUN
cord-002994-1zjrunzc	22	26	's	's	PART
cord-002994-1zjrunzc	22	27	instructions	instruction	NOUN
cord-002994-1zjrunzc	22	28	.	.	PUNCT
cord-002994-1zjrunzc	23	1	extracted	extract	VERB
cord-002994-1zjrunzc	23	2	rna	rna	PROPN
cord-002994-1zjrunzc	23	3	was	be	AUX
cord-002994-1zjrunzc	23	4	frozen	freeze	VERB
cord-002994-1zjrunzc	23	5	at	at	ADP
cord-002994-1zjrunzc	23	6	−80	−80	PROPN
cord-002994-1zjrunzc	23	7	•	•	PUNCT
cord-002994-1zjrunzc	24	1	c	c	NOUN
cord-002994-1zjrunzc	25	1	prior	prior	ADV
cord-002994-1zjrunzc	25	2	to	to	ADP
cord-002994-1zjrunzc	25	3	downstream	downstream	ADJ
cord-002994-1zjrunzc	25	4	applications	application	NOUN
cord-002994-1zjrunzc	25	5	.	.	PUNCT
cord-002994-1zjrunzc	26	1	real	real	ADJ
cord-002994-1zjrunzc	26	2	-	-	PUNCT
cord-002994-1zjrunzc	26	3	time	time	NOUN
cord-002994-1zjrunzc	26	4	rt	rt	PROPN
cord-002994-1zjrunzc	26	5	-	-	PUNCT
cord-002994-1zjrunzc	26	6	pcr	pcr	PROPN
cord-002994-1zjrunzc	26	7	(	(	PUNCT
cord-002994-1zjrunzc	26	8	reverse	reverse	ADJ
cord-002994-1zjrunzc	26	9	transcriptase	transcriptase	NOUN
cord-002994-1zjrunzc	26	10	-	-	PUNCT
cord-002994-1zjrunzc	26	11	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	26	12	chain	chain	NOUN
cord-002994-1zjrunzc	26	13	reaction	reaction	NOUN
cord-002994-1zjrunzc	26	14	)	)	PUNCT
cord-002994-1zjrunzc	26	15	was	be	AUX
cord-002994-1zjrunzc	26	16	performed	perform	VERB
cord-002994-1zjrunzc	26	17	using	use	VERB
cord-002994-1zjrunzc	26	18	the	the	DET
cord-002994-1zjrunzc	26	19	quantitect	quantitect	ADJ
cord-002994-1zjrunzc	26	20	®	®	PROPN
cord-002994-1zjrunzc	26	21	probe	probe	PROPN
cord-002994-1zjrunzc	26	22	rt	rt	PROPN
cord-002994-1zjrunzc	26	23	-	-	PUNCT
cord-002994-1zjrunzc	26	24	pcr	pcr	PROPN
cord-002994-1zjrunzc	26	25	kit	kit	NOUN
cord-002994-1zjrunzc	26	26	(	(	PUNCT
cord-002994-1zjrunzc	26	27	qiagen	qiagen	PROPN
cord-002994-1zjrunzc	26	28	,	,	PUNCT
cord-002994-1zjrunzc	26	29	heiden	heiden	PROPN
cord-002994-1zjrunzc	26	30	,	,	PUNCT
cord-002994-1zjrunzc	26	31	germany	germany	PROPN
cord-002994-1zjrunzc	26	32	)	)	PUNCT
cord-002994-1zjrunzc	26	33	in	in	ADP
cord-002994-1zjrunzc	26	34	a	a	DET
cord-002994-1zjrunzc	26	35	final	final	ADJ
cord-002994-1zjrunzc	26	36	volume	volume	NOUN
cord-002994-1zjrunzc	26	37	of	of	ADP
cord-002994-1zjrunzc	26	38	25	25	NUM
cord-002994-1zjrunzc	26	39	µl	µl	NOUN
cord-002994-1zjrunzc	26	40	following	follow	VERB
cord-002994-1zjrunzc	26	41	previously	previously	ADV
cord-002994-1zjrunzc	26	42	established	establish	VERB
cord-002994-1zjrunzc	26	43	protocols	protocol	NOUN
cord-002994-1zjrunzc	26	44	and	and	CCONJ
cord-002994-1zjrunzc	26	45	primers	primer	NOUN
cord-002994-1zjrunzc	26	46	[	[	X
cord-002994-1zjrunzc	26	47	16	16	NUM
cord-002994-1zjrunzc	26	48	]	]	PUNCT
cord-002994-1zjrunzc	26	49	.	.	PUNCT
cord-002994-1zjrunzc	27	1	reverse	reverse	NOUN
cord-002994-1zjrunzc	27	2	-	-	PUNCT
cord-002994-1zjrunzc	27	3	transcription	transcription	NOUN
cord-002994-1zjrunzc	27	4	was	be	AUX
cord-002994-1zjrunzc	27	5	performed	perform	VERB
cord-002994-1zjrunzc	27	6	using	use	VERB
cord-002994-1zjrunzc	27	7	the	the	DET
cord-002994-1zjrunzc	27	8	amv	amv	PROPN
cord-002994-1zjrunzc	27	9	kit	kit	NOUN
cord-002994-1zjrunzc	27	10	(	(	PUNCT
cord-002994-1zjrunzc	27	11	promega	promega	PROPN
cord-002994-1zjrunzc	27	12	,	,	PUNCT
cord-002994-1zjrunzc	27	13	madison	madison	PROPN
cord-002994-1zjrunzc	27	14	,	,	PUNCT
cord-002994-1zjrunzc	27	15	wi	wi	PROPN
cord-002994-1zjrunzc	27	16	,	,	PUNCT
cord-002994-1zjrunzc	27	17	usa	usa	PROPN
cord-002994-1zjrunzc	27	18	)	)	PUNCT
cord-002994-1zjrunzc	27	19	following	follow	VERB
cord-002994-1zjrunzc	27	20	manufacturer	manufacturer	NOUN
cord-002994-1zjrunzc	27	21	's	's	PART
cord-002994-1zjrunzc	27	22	instructions	instruction	NOUN
cord-002994-1zjrunzc	27	23	and	and	CCONJ
cord-002994-1zjrunzc	27	24	cdna	cdna	PROPN
cord-002994-1zjrunzc	27	25	were	be	AUX
cord-002994-1zjrunzc	27	26	stored	store	VERB
cord-002994-1zjrunzc	27	27	at	at	ADP
cord-002994-1zjrunzc	27	28	−20	−20	PROPN
cord-002994-1zjrunzc	27	29	•	•	X
cord-002994-1zjrunzc	27	30	c.	c.	PROPN
cord-002994-1zjrunzc	28	1	the	the	DET
cord-002994-1zjrunzc	28	2	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	28	3	chain	chain	NOUN
cord-002994-1zjrunzc	28	4	reaction	reaction	NOUN
cord-002994-1zjrunzc	28	5	with	with	ADP
cord-002994-1zjrunzc	28	6	each	each	DET
cord-002994-1zjrunzc	28	7	primer	primer	NOUN
cord-002994-1zjrunzc	28	8	set	set	NOUN
cord-002994-1zjrunzc	28	9	was	be	AUX
cord-002994-1zjrunzc	28	10	carried	carry	VERB
cord-002994-1zjrunzc	28	11	out	out	ADP
cord-002994-1zjrunzc	28	12	in	in	ADP
cord-002994-1zjrunzc	28	13	a	a	DET
cord-002994-1zjrunzc	28	14	final	final	ADJ
cord-002994-1zjrunzc	28	15	volume	volume	NOUN
cord-002994-1zjrunzc	28	16	of	of	ADP
cord-002994-1zjrunzc	28	17	50	50	NUM
cord-002994-1zjrunzc	28	18	µl	µl	NOUN
cord-002994-1zjrunzc	28	19	using	use	VERB
cord-002994-1zjrunzc	28	20	the	the	DET
cord-002994-1zjrunzc	28	21	gotaq	gotaq	PROPN
cord-002994-1zjrunzc	28	22	®	®	NOUN
cord-002994-1zjrunzc	28	23	dna	dna	PROPN
cord-002994-1zjrunzc	28	24	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	28	25	kit	kit	NOUN
cord-002994-1zjrunzc	28	26	(	(	PUNCT
cord-002994-1zjrunzc	28	27	promega	promega	PROPN
cord-002994-1zjrunzc	28	28	,	,	PUNCT
cord-002994-1zjrunzc	28	29	madison	madison	PROPN
cord-002994-1zjrunzc	28	30	,	,	PUNCT
cord-002994-1zjrunzc	28	31	wi	wi	PROPN
cord-002994-1zjrunzc	28	32	,	,	PUNCT
cord-002994-1zjrunzc	28	33	usa	usa	PROPN
cord-002994-1zjrunzc	28	34	)	)	PUNCT
cord-002994-1zjrunzc	28	35	according	accord	VERB
cord-002994-1zjrunzc	28	36	to	to	ADP
cord-002994-1zjrunzc	28	37	manufacturer	manufacturer	NOUN
cord-002994-1zjrunzc	28	38	's	's	PART
cord-002994-1zjrunzc	28	39	instructions	instruction	NOUN
cord-002994-1zjrunzc	28	40	.	.	PUNCT
cord-002994-1zjrunzc	29	1	briefly	briefly	ADV
cord-002994-1zjrunzc	29	2	,	,	PUNCT
cord-002994-1zjrunzc	29	3	5	5	NUM
cord-002994-1zjrunzc	29	4	µl	µl	NOUN
cord-002994-1zjrunzc	29	5	(	(	PUNCT
cord-002994-1zjrunzc	29	6	around	around	ADP
cord-002994-1zjrunzc	29	7	10	10	NUM
cord-002994-1zjrunzc	29	8	µg	µg	NOUN
cord-002994-1zjrunzc	29	9	)	)	PUNCT
cord-002994-1zjrunzc	29	10	of	of	ADP
cord-002994-1zjrunzc	29	11	cdna	cdna	PROPN
cord-002994-1zjrunzc	29	12	was	be	AUX
cord-002994-1zjrunzc	29	13	added	add	VERB
cord-002994-1zjrunzc	29	14	to	to	ADP
cord-002994-1zjrunzc	29	15	45	45	NUM
cord-002994-1zjrunzc	29	16	µl	µl	NOUN
cord-002994-1zjrunzc	29	17	of	of	ADP
cord-002994-1zjrunzc	29	18	a	a	DET
cord-002994-1zjrunzc	29	19	rt	rt	NOUN
cord-002994-1zjrunzc	29	20	-	-	PUNCT
cord-002994-1zjrunzc	29	21	pcr	pcr	PROPN
cord-002994-1zjrunzc	29	22	mix	mix	NOUN
cord-002994-1zjrunzc	29	23	containing	contain	VERB
cord-002994-1zjrunzc	29	24	25	25	NUM
cord-002994-1zjrunzc	29	25	mm	mm	PROPN
cord-002994-1zjrunzc	29	26	mgcl2	mgcl2	PROPN
cord-002994-1zjrunzc	29	27	,	,	PUNCT
cord-002994-1zjrunzc	29	28	10	10	NUM
cord-002994-1zjrunzc	29	29	mm	mm	NOUN
cord-002994-1zjrunzc	29	30	of	of	ADP
cord-002994-1zjrunzc	29	31	dntp	dntp	PROPN
cord-002994-1zjrunzc	29	32	,	,	PUNCT
cord-002994-1zjrunzc	29	33	5x	5x	ADJ
cord-002994-1zjrunzc	29	34	reaction	reaction	NOUN
cord-002994-1zjrunzc	29	35	buffer	buffer	NOUN
cord-002994-1zjrunzc	29	36	,	,	PUNCT
cord-002994-1zjrunzc	29	37	5	5	NUM
cord-002994-1zjrunzc	29	38	u	u	NOUN
cord-002994-1zjrunzc	29	39	gotaq	gotaq	ADJ
cord-002994-1zjrunzc	29	40	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	29	41	,	,	PUNCT
cord-002994-1zjrunzc	29	42	16.5	16.5	NUM
cord-002994-1zjrunzc	29	43	µl	µl	NOUN
cord-002994-1zjrunzc	29	44	of	of	ADP
cord-002994-1zjrunzc	29	45	nuclease	nuclease	ADJ
cord-002994-1zjrunzc	29	46	-	-	PUNCT
cord-002994-1zjrunzc	29	47	free	free	ADJ
cord-002994-1zjrunzc	29	48	water	water	NOUN
cord-002994-1zjrunzc	29	49	and	and	CCONJ
cord-002994-1zjrunzc	29	50	40	40	NUM
cord-002994-1zjrunzc	29	51	pmols	pmol	NOUN
cord-002994-1zjrunzc	29	52	of	of	ADP
cord-002994-1zjrunzc	29	53	each	each	DET
cord-002994-1zjrunzc	29	54	primer	primer	NOUN
cord-002994-1zjrunzc	29	55	(	(	PUNCT
cord-002994-1zjrunzc	29	56	sense	sense	NOUN
cord-002994-1zjrunzc	29	57	and	and	CCONJ
cord-002994-1zjrunzc	29	58	antisense	antisense	NOUN
cord-002994-1zjrunzc	29	59	)	)	PUNCT
cord-002994-1zjrunzc	29	60	.	.	PUNCT
cord-002994-1zjrunzc	30	1	pcr	pcr	PROPN
cord-002994-1zjrunzc	30	2	was	be	AUX
cord-002994-1zjrunzc	30	3	carried	carry	VERB
cord-002994-1zjrunzc	30	4	using	use	VERB
cord-002994-1zjrunzc	30	5	the	the	DET
cord-002994-1zjrunzc	30	6	following	following	ADJ
cord-002994-1zjrunzc	30	7	conditions	condition	NOUN
cord-002994-1zjrunzc	30	8	:	:	PUNCT
cord-002994-1zjrunzc	30	9	an	an	DET
cord-002994-1zjrunzc	30	10	initial	initial	ADJ
cord-002994-1zjrunzc	30	11	incubation	incubation	NOUN
cord-002994-1zjrunzc	30	12	at	at	ADP
cord-002994-1zjrunzc	30	13	95	95	NUM
cord-002994-1zjrunzc	30	14	•	•	SYM
cord-002994-1zjrunzc	30	15	c	c	NOUN
cord-002994-1zjrunzc	30	16	for	for	ADP
cord-002994-1zjrunzc	30	17	5	5	NUM
cord-002994-1zjrunzc	30	18	min	min	NOUN
cord-002994-1zjrunzc	30	19	,	,	PUNCT
cord-002994-1zjrunzc	30	20	followed	follow	VERB
cord-002994-1zjrunzc	30	21	by	by	ADP
cord-002994-1zjrunzc	30	22	40	40	NUM
cord-002994-1zjrunzc	30	23	cycles	cycle	NOUN
cord-002994-1zjrunzc	30	24	of	of	ADP
cord-002994-1zjrunzc	30	25	95	95	NUM
cord-002994-1zjrunzc	30	26	•	•	SYM
cord-002994-1zjrunzc	30	27	c	c	NOUN
cord-002994-1zjrunzc	30	28	for	for	ADP
cord-002994-1zjrunzc	30	29	1	1	NUM
cord-002994-1zjrunzc	30	30	min	min	NOUN
cord-002994-1zjrunzc	30	31	,	,	PUNCT
cord-002994-1zjrunzc	30	32	1	1	NUM
cord-002994-1zjrunzc	30	33	min	min	NOUN
cord-002994-1zjrunzc	30	34	at	at	ADP
cord-002994-1zjrunzc	30	35	melting	melt	VERB
cord-002994-1zjrunzc	30	36	temperature	temperature	NOUN
cord-002994-1zjrunzc	30	37	of	of	ADP
cord-002994-1zjrunzc	30	38	primers	primer	NOUN
cord-002994-1zjrunzc	30	39	,	,	PUNCT
cord-002994-1zjrunzc	30	40	and	and	CCONJ
cord-002994-1zjrunzc	30	41	72	72	NUM
cord-002994-1zjrunzc	30	42	•	•	SYM
cord-002994-1zjrunzc	30	43	c	c	X
cord-002994-1zjrunzc	30	44	according	accord	VERB
cord-002994-1zjrunzc	30	45	to	to	ADP
cord-002994-1zjrunzc	30	46	the	the	DET
cord-002994-1zjrunzc	30	47	length	length	NOUN
cord-002994-1zjrunzc	30	48	of	of	ADP
cord-002994-1zjrunzc	30	49	pcr	pcr	NOUN
cord-002994-1zjrunzc	30	50	product	product	NOUN
cord-002994-1zjrunzc	30	51	and	and	CCONJ
cord-002994-1zjrunzc	30	52	72	72	NUM
cord-002994-1zjrunzc	30	53	•	•	SYM
cord-002994-1zjrunzc	30	54	c	c	NOUN
cord-002994-1zjrunzc	30	55	during	during	ADP
cord-002994-1zjrunzc	30	56	10	10	NUM
cord-002994-1zjrunzc	30	57	min	min	NOUN
cord-002994-1zjrunzc	30	58	.	.	PROPN
cord-002994-1zjrunzc	30	59	subsequently	subsequently	ADV
cord-002994-1zjrunzc	30	60	,	,	PUNCT
cord-002994-1zjrunzc	30	61	5	5	NUM
cord-002994-1zjrunzc	30	62	µl	µl	NOUN
cord-002994-1zjrunzc	30	63	of	of	ADP
cord-002994-1zjrunzc	30	64	each	each	DET
cord-002994-1zjrunzc	30	65	pcr	pcr	NOUN
cord-002994-1zjrunzc	30	66	product	product	NOUN
cord-002994-1zjrunzc	30	67	was	be	AUX
cord-002994-1zjrunzc	30	68	analyzed	analyze	VERB
cord-002994-1zjrunzc	30	69	by	by	ADP
cord-002994-1zjrunzc	30	70	gel	gel	NOUN
cord-002994-1zjrunzc	30	71	electrophoresis	electrophoresis	NOUN
cord-002994-1zjrunzc	30	72	on	on	ADP
cord-002994-1zjrunzc	30	73	1	1	NUM
cord-002994-1zjrunzc	30	74	%	%	NOUN
cord-002994-1zjrunzc	30	75	agarose	agarose	NOUN
cord-002994-1zjrunzc	30	76	gels	gel	NOUN
cord-002994-1zjrunzc	30	77	stained	stain	VERB
cord-002994-1zjrunzc	30	78	with	with	ADP
cord-002994-1zjrunzc	30	79	ethidium	ethidium	NOUN
cord-002994-1zjrunzc	30	80	bromide	bromide	NOUN
cord-002994-1zjrunzc	30	81	to	to	PART
cord-002994-1zjrunzc	30	82	check	check	VERB
cord-002994-1zjrunzc	30	83	the	the	DET
cord-002994-1zjrunzc	30	84	size	size	NOUN
cord-002994-1zjrunzc	30	85	of	of	ADP
cord-002994-1zjrunzc	30	86	amplified	amplify	VERB
cord-002994-1zjrunzc	30	87	fragments	fragment	NOUN
cord-002994-1zjrunzc	30	88	by	by	ADP
cord-002994-1zjrunzc	30	89	comparison	comparison	NOUN
cord-002994-1zjrunzc	30	90	to	to	ADP
cord-002994-1zjrunzc	30	91	a	a	DET
cord-002994-1zjrunzc	30	92	dna	dna	PROPN
cord-002994-1zjrunzc	30	93	molecular	molecular	ADJ
cord-002994-1zjrunzc	30	94	weight	weight	NOUN
cord-002994-1zjrunzc	30	95	marker	marker	NOUN
cord-002994-1zjrunzc	30	96	(	(	PUNCT
cord-002994-1zjrunzc	30	97	hyperladder	hyperladder	NOUN
cord-002994-1zjrunzc	30	98	™	™	NOUN
cord-002994-1zjrunzc	30	99	1	1	NUM
cord-002994-1zjrunzc	30	100	kb	kb	PROPN
cord-002994-1zjrunzc	30	101	,	,	PUNCT
cord-002994-1zjrunzc	30	102	bioline	bioline	PROPN
cord-002994-1zjrunzc	30	103	,	,	PUNCT
cord-002994-1zjrunzc	30	104	taunton	taunton	PROPN
cord-002994-1zjrunzc	30	105	,	,	PUNCT
cord-002994-1zjrunzc	30	106	ma	ma	PROPN
cord-002994-1zjrunzc	30	107	,	,	PUNCT
cord-002994-1zjrunzc	30	108	usa	usa	PROPN
cord-002994-1zjrunzc	30	109	)	)	PUNCT
cord-002994-1zjrunzc	30	110	.	.	PUNCT
cord-002994-1zjrunzc	31	1	the	the	DET
cord-002994-1zjrunzc	31	2	dna	dna	PROPN
cord-002994-1zjrunzc	31	3	bands	band	NOUN
cord-002994-1zjrunzc	31	4	from	from	ADP
cord-002994-1zjrunzc	31	5	the	the	DET
cord-002994-1zjrunzc	31	6	pcr	pcr	NOUN
cord-002994-1zjrunzc	31	7	amplification	amplification	NOUN
cord-002994-1zjrunzc	31	8	were	be	AUX
cord-002994-1zjrunzc	31	9	purified	purify	VERB
cord-002994-1zjrunzc	31	10	(	(	PUNCT
cord-002994-1zjrunzc	31	11	qiaquick	qiaquick	NOUN
cord-002994-1zjrunzc	31	12	gel	gel	PROPN
cord-002994-1zjrunzc	31	13	extraction	extraction	NOUN
cord-002994-1zjrunzc	31	14	kit	kit	PROPN
cord-002994-1zjrunzc	31	15	,	,	PUNCT
cord-002994-1zjrunzc	31	16	qiagen	qiagen	PROPN
cord-002994-1zjrunzc	31	17	,	,	PUNCT
cord-002994-1zjrunzc	31	18	heiden	heiden	PROPN
cord-002994-1zjrunzc	31	19	,	,	PUNCT
cord-002994-1zjrunzc	31	20	germany	germany	PROPN
cord-002994-1zjrunzc	31	21	)	)	PUNCT
cord-002994-1zjrunzc	31	22	and	and	CCONJ
cord-002994-1zjrunzc	31	23	sequenced	sequence	VERB
cord-002994-1zjrunzc	31	24	from	from	ADP
cord-002994-1zjrunzc	31	25	both	both	DET
cord-002994-1zjrunzc	31	26	ends	end	NOUN
cord-002994-1zjrunzc	31	27	for	for	ADP
cord-002994-1zjrunzc	31	28	each	each	DET
cord-002994-1zjrunzc	31	29	positive	positive	ADJ
cord-002994-1zjrunzc	31	30	sample	sample	NOUN
cord-002994-1zjrunzc	31	31	(	(	PUNCT
cord-002994-1zjrunzc	31	32	beckmann	beckmann	PROPN
cord-002994-1zjrunzc	31	33	coulter	coulter	PROPN
cord-002994-1zjrunzc	31	34	,	,	PUNCT
cord-002994-1zjrunzc	31	35	high	high	ADJ
cord-002994-1zjrunzc	31	36	wycombe	wycombe	PROPN
cord-002994-1zjrunzc	31	37	,	,	PUNCT
cord-002994-1zjrunzc	31	38	uk	uk	PROPN
cord-002994-1zjrunzc	31	39	)	)	PUNCT
cord-002994-1zjrunzc	31	40	.	.	PUNCT
cord-002994-1zjrunzc	32	1	sequencing	sequence	VERB
cord-002994-1zjrunzc	32	2	of	of	ADP
cord-002994-1zjrunzc	32	3	the	the	DET
cord-002994-1zjrunzc	32	4	5	5	NUM
cord-002994-1zjrunzc	32	5	and	and	CCONJ
cord-002994-1zjrunzc	32	6	3	3	NUM
cord-002994-1zjrunzc	32	7	termini	termini	NOUN
cord-002994-1zjrunzc	32	8	of	of	ADP
cord-002994-1zjrunzc	32	9	the	the	DET
cord-002994-1zjrunzc	32	10	viral	viral	ADJ
cord-002994-1zjrunzc	32	11	genome	genome	NOUN
cord-002994-1zjrunzc	32	12	was	be	AUX
cord-002994-1zjrunzc	32	13	performed	perform	VERB
cord-002994-1zjrunzc	32	14	using	use	VERB
cord-002994-1zjrunzc	32	15	a	a	DET
cord-002994-1zjrunzc	32	16	5	5	NUM
cord-002994-1zjrunzc	32	17	race	race	NOUN
cord-002994-1zjrunzc	32	18	kit	kit	NOUN
cord-002994-1zjrunzc	32	19	(	(	PUNCT
cord-002994-1zjrunzc	32	20	invitrogen	invitrogen	PROPN
cord-002994-1zjrunzc	32	21	,	,	PUNCT
cord-002994-1zjrunzc	32	22	carlsbad	carlsbad	PROPN
cord-002994-1zjrunzc	32	23	,	,	PUNCT
cord-002994-1zjrunzc	32	24	ca	can	AUX
cord-002994-1zjrunzc	32	25	,	,	PUNCT
cord-002994-1zjrunzc	32	26	usa	usa	PROPN
cord-002994-1zjrunzc	32	27	)	)	PUNCT
cord-002994-1zjrunzc	32	28	and	and	CCONJ
cord-002994-1zjrunzc	32	29	a	a	DET
cord-002994-1zjrunzc	32	30	3	3	NUM
cord-002994-1zjrunzc	32	31	race	race	NOUN
cord-002994-1zjrunzc	32	32	kit	kit	NOUN
cord-002994-1zjrunzc	32	33	(	(	PUNCT
cord-002994-1zjrunzc	32	34	roche	roche	NOUN
cord-002994-1zjrunzc	32	35	,	,	PUNCT
cord-002994-1zjrunzc	32	36	basel	basel	NOUN
cord-002994-1zjrunzc	32	37	,	,	PUNCT
cord-002994-1zjrunzc	32	38	switzerland	switzerland	PROPN
cord-002994-1zjrunzc	32	39	)	)	PUNCT
cord-002994-1zjrunzc	32	40	following	follow	VERB
cord-002994-1zjrunzc	32	41	the	the	DET
cord-002994-1zjrunzc	32	42	manufacturer	manufacturer	NOUN
cord-002994-1zjrunzc	32	43	's	's	PART
cord-002994-1zjrunzc	32	44	protocols	protocol	NOUN
cord-002994-1zjrunzc	32	45	.	.	PUNCT
cord-002994-1zjrunzc	33	1	additional	additional	ADJ
cord-002994-1zjrunzc	33	2	sequences	sequence	NOUN
cord-002994-1zjrunzc	33	3	representing	represent	VERB
cord-002994-1zjrunzc	33	4	strains	strain	NOUN
cord-002994-1zjrunzc	33	5	from	from	ADP
cord-002994-1zjrunzc	33	6	central	central	ADJ
cord-002994-1zjrunzc	33	7	african	african	PROPN
cord-002994-1zjrunzc	33	8	republic	republic	PROPN
cord-002994-1zjrunzc	33	9	,	,	PUNCT
cord-002994-1zjrunzc	33	10	india	india	PROPN
cord-002994-1zjrunzc	33	11	,	,	PUNCT
cord-002994-1zjrunzc	33	12	strain	strain	VERB
cord-002994-1zjrunzc	33	13	related	relate	VERB
cord-002994-1zjrunzc	33	14	to	to	ADP
cord-002994-1zjrunzc	33	15	spanish	spanish	ADJ
cord-002994-1zjrunzc	33	16	wild	wild	PROPN
cord-002994-1zjrunzc	33	17	bird	bird	NOUN
cord-002994-1zjrunzc	33	18	's	's	PART
cord-002994-1zjrunzc	33	19	outbreak	outbreak	NOUN
cord-002994-1zjrunzc	33	20	in	in	ADP
cord-002994-1zjrunzc	33	21	2010	2010	NUM
cord-002994-1zjrunzc	33	22	,	,	PUNCT
cord-002994-1zjrunzc	33	23	the	the	DET
cord-002994-1zjrunzc	33	24	itv	itv	PROPN
cord-002994-1zjrunzc	33	25	and	and	CCONJ
cord-002994-1zjrunzc	33	26	the	the	DET
cord-002994-1zjrunzc	33	27	ntaya	ntaya	PROPN
cord-002994-1zjrunzc	33	28	virus	virus	NOUN
cord-002994-1zjrunzc	33	29	were	be	AUX
cord-002994-1zjrunzc	33	30	obtained	obtain	VERB
cord-002994-1zjrunzc	33	31	from	from	ADP
cord-002994-1zjrunzc	33	32	genbank	genbank	PROPN
cord-002994-1zjrunzc	33	33	,	,	PUNCT
cord-002994-1zjrunzc	33	34	with	with	ADP
cord-002994-1zjrunzc	33	35	the	the	DET
cord-002994-1zjrunzc	33	36	following	follow	VERB
cord-002994-1zjrunzc	33	37	accession	accession	NOUN
cord-002994-1zjrunzc	33	38	numbers	number	NOUN
cord-002994-1zjrunzc	33	39	,	,	PUNCT
cord-002994-1zjrunzc	33	40	respectively	respectively	ADV
cord-002994-1zjrunzc	33	41	:	:	PUNCT
cord-002994-1zjrunzc	33	42	ay632545	ay632545	PROPN
cord-002994-1zjrunzc	33	43	,	,	PUNCT
cord-002994-1zjrunzc	33	44	eu684972	eu684972	PROPN
cord-002994-1zjrunzc	33	45	,	,	PUNCT
cord-002994-1zjrunzc	33	46	hq644143	hq644143	PROPN
cord-002994-1zjrunzc	33	47	,	,	PUNCT
cord-002994-1zjrunzc	33	48	kc734549	kc734549	PROPN
cord-002994-1zjrunzc	33	49	and	and	CCONJ
cord-002994-1zjrunzc	33	50	nc_018705	nc_018705	PROPN
cord-002994-1zjrunzc	33	51	.	.	PUNCT
cord-002994-1zjrunzc	34	1	full	full	ADJ
cord-002994-1zjrunzc	34	2	-	-	PUNCT
cord-002994-1zjrunzc	34	3	length	length	NOUN
cord-002994-1zjrunzc	34	4	genome	genome	NOUN
cord-002994-1zjrunzc	34	5	sequences	sequence	NOUN
cord-002994-1zjrunzc	34	6	bagv	bagv	NOUN
cord-002994-1zjrunzc	34	7	isolates	isolate	NOUN
cord-002994-1zjrunzc	34	8	were	be	AUX
cord-002994-1zjrunzc	34	9	obtained	obtain	VERB
cord-002994-1zjrunzc	34	10	by	by	ADP
cord-002994-1zjrunzc	34	11	assembling	assemble	VERB
cord-002994-1zjrunzc	34	12	overlapping	overlap	VERB
cord-002994-1zjrunzc	34	13	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	34	14	sequences	sequence	NOUN
cord-002994-1zjrunzc	34	15	using	use	VERB
cord-002994-1zjrunzc	34	16	the	the	DET
cord-002994-1zjrunzc	34	17	unipro	unipro	ADJ
cord-002994-1zjrunzc	34	18	ugene	ugene	ADJ
cord-002994-1zjrunzc	34	19	software	software	NOUN
cord-002994-1zjrunzc	34	20	(	(	PUNCT
cord-002994-1zjrunzc	34	21	http://ugene.net/download.html	http://ugene.net/download.html	X
cord-002994-1zjrunzc	34	22	)	)	PUNCT
cord-002994-1zjrunzc	35	1	[	[	X
cord-002994-1zjrunzc	35	2	17	17	NUM
cord-002994-1zjrunzc	35	3	]	]	PUNCT
cord-002994-1zjrunzc	35	4	.	.	PUNCT
cord-002994-1zjrunzc	36	1	multiple	multiple	ADJ
cord-002994-1zjrunzc	36	2	alignments	alignment	NOUN
cord-002994-1zjrunzc	36	3	of	of	ADP
cord-002994-1zjrunzc	36	4	full	full	ADJ
cord-002994-1zjrunzc	36	5	-	-	PUNCT
cord-002994-1zjrunzc	36	6	genome	genome	NOUN
cord-002994-1zjrunzc	36	7	sequences	sequence	NOUN
cord-002994-1zjrunzc	36	8	were	be	AUX
cord-002994-1zjrunzc	36	9	carried	carry	VERB
cord-002994-1zjrunzc	36	10	out	out	ADP
cord-002994-1zjrunzc	36	11	by	by	ADP
cord-002994-1zjrunzc	36	12	using	use	VERB
cord-002994-1zjrunzc	36	13	muscle	muscle	NOUN
cord-002994-1zjrunzc	36	14	algorithm	algorithm	NOUN
cord-002994-1zjrunzc	36	15	(	(	PUNCT
cord-002994-1zjrunzc	36	16	http://www.drive5.com/muscle/	http://www.drive5.com/muscle/	PROPN
cord-002994-1zjrunzc	36	17	)	)	PUNCT
cord-002994-1zjrunzc	37	1	[	[	PUNCT
cord-002994-1zjrunzc	37	2	18	18	NUM
cord-002994-1zjrunzc	37	3	]	]	PUNCT
cord-002994-1zjrunzc	37	4	within	within	ADP
cord-002994-1zjrunzc	37	5	unipro	unipro	ADJ
cord-002994-1zjrunzc	37	6	ugene	ugene	ADJ
cord-002994-1zjrunzc	37	7	software	software	NOUN
cord-002994-1zjrunzc	37	8	.	.	PUNCT
cord-002994-1zjrunzc	38	1	based	base	VERB
cord-002994-1zjrunzc	38	2	on	on	ADP
cord-002994-1zjrunzc	38	3	these	these	DET
cord-002994-1zjrunzc	38	4	alignments	alignment	NOUN
cord-002994-1zjrunzc	38	5	,	,	PUNCT
cord-002994-1zjrunzc	38	6	we	we	PRON
cord-002994-1zjrunzc	38	7	investigated	investigate	VERB
cord-002994-1zjrunzc	38	8	the	the	DET
cord-002994-1zjrunzc	38	9	genetic	genetic	ADJ
cord-002994-1zjrunzc	38	10	properties	property	NOUN
cord-002994-1zjrunzc	38	11	of	of	ADP
cord-002994-1zjrunzc	38	12	these	these	DET
cord-002994-1zjrunzc	38	13	different	different	ADJ
cord-002994-1zjrunzc	38	14	isolates	isolate	NOUN
cord-002994-1zjrunzc	38	15	circulating	circulate	VERB
cord-002994-1zjrunzc	38	16	in	in	ADP
cord-002994-1zjrunzc	38	17	west	west	PROPN
cord-002994-1zjrunzc	38	18	africa	africa	PROPN
cord-002994-1zjrunzc	38	19	,	,	PUNCT
cord-002994-1zjrunzc	38	20	such	such	ADJ
cord-002994-1zjrunzc	38	21	as	as	ADP
cord-002994-1zjrunzc	38	22	genome	genome	NOUN
cord-002994-1zjrunzc	38	23	length	length	NOUN
cord-002994-1zjrunzc	38	24	and	and	CCONJ
cord-002994-1zjrunzc	38	25	location	location	NOUN
cord-002994-1zjrunzc	38	26	of	of	ADP
cord-002994-1zjrunzc	38	27	main	main	ADJ
cord-002994-1zjrunzc	38	28	conserved	conserved	ADJ
cord-002994-1zjrunzc	38	29	amino	amino	NOUN
cord-002994-1zjrunzc	38	30	acid	acid	NOUN
cord-002994-1zjrunzc	38	31	motifs	motif	NOUN
cord-002994-1zjrunzc	38	32	previously	previously	ADV
cord-002994-1zjrunzc	38	33	described	describe	VERB
cord-002994-1zjrunzc	38	34	in	in	ADP
cord-002994-1zjrunzc	38	35	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	38	36	-	-	PUNCT
cord-002994-1zjrunzc	38	37	borne	bear	VERB
cord-002994-1zjrunzc	38	38	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	38	39	(	(	PUNCT
cord-002994-1zjrunzc	38	40	mbfvs	mbfvs	PROPN
cord-002994-1zjrunzc	38	41	)	)	PUNCT
cord-002994-1zjrunzc	38	42	with	with	ADP
cord-002994-1zjrunzc	38	43	sometimes	sometimes	ADV
cord-002994-1zjrunzc	38	44	mutations	mutation	NOUN
cord-002994-1zjrunzc	38	45	which	which	PRON
cord-002994-1zjrunzc	38	46	include	include	VERB
cord-002994-1zjrunzc	38	47	no	no	DET
cord-002994-1zjrunzc	38	48	physicochemical	physicochemical	ADJ
cord-002994-1zjrunzc	38	49	properties	property	NOUN
cord-002994-1zjrunzc	38	50	changes	change	VERB
cord-002994-1zjrunzc	38	51	[	[	X
cord-002994-1zjrunzc	38	52	3	3	NUM
cord-002994-1zjrunzc	38	53	]	]	PUNCT
cord-002994-1zjrunzc	38	54	.	.	PUNCT
cord-002994-1zjrunzc	39	1	comparatively	comparatively	ADV
cord-002994-1zjrunzc	39	2	,	,	PUNCT
cord-002994-1zjrunzc	39	3	conservation	conservation	NOUN
cord-002994-1zjrunzc	39	4	of	of	ADP
cord-002994-1zjrunzc	39	5	these	these	DET
cord-002994-1zjrunzc	39	6	motifs	motif	NOUN
cord-002994-1zjrunzc	39	7	was	be	AUX
cord-002994-1zjrunzc	39	8	also	also	ADV
cord-002994-1zjrunzc	39	9	assessed	assess	VERB
cord-002994-1zjrunzc	39	10	in	in	ADP
cord-002994-1zjrunzc	39	11	culex	culex	PROPN
cord-002994-1zjrunzc	39	12	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	39	13	(	(	PUNCT
cord-002994-1zjrunzc	39	14	cxfv	cxfv	PROPN
cord-002994-1zjrunzc	39	15	)	)	PUNCT
cord-002994-1zjrunzc	39	16	and	and	CCONJ
cord-002994-1zjrunzc	39	17	aedes	aedes	PROPN
cord-002994-1zjrunzc	39	18	flavivirus	flavivirus	PROPN
cord-002994-1zjrunzc	39	19	(	(	PUNCT
cord-002994-1zjrunzc	39	20	aefv	aefv	PROPN
cord-002994-1zjrunzc	39	21	)	)	PUNCT
cord-002994-1zjrunzc	39	22	(	(	PUNCT
cord-002994-1zjrunzc	39	23	insect	insect	NOUN
cord-002994-1zjrunzc	39	24	-	-	PUNCT
cord-002994-1zjrunzc	39	25	specific	specific	ADJ
cord-002994-1zjrunzc	39	26	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	39	27	;	;	PUNCT
cord-002994-1zjrunzc	39	28	(	(	PUNCT
cord-002994-1zjrunzc	39	29	isfs	isfs	PROPN
cord-002994-1zjrunzc	39	30	)	)	PUNCT
cord-002994-1zjrunzc	39	31	)	)	PUNCT
cord-002994-1zjrunzc	39	32	and	and	CCONJ
cord-002994-1zjrunzc	39	33	in	in	ADP
cord-002994-1zjrunzc	39	34	modoc	modoc	PROPN
cord-002994-1zjrunzc	39	35	virus	virus	PROPN
cord-002994-1zjrunzc	39	36	(	(	PUNCT
cord-002994-1zjrunzc	39	37	modv	modv	PROPN
cord-002994-1zjrunzc	39	38	)	)	PUNCT
cord-002994-1zjrunzc	39	39	and	and	CCONJ
cord-002994-1zjrunzc	39	40	rio	rio	PROPN
cord-002994-1zjrunzc	39	41	bravo	bravo	ADJ
cord-002994-1zjrunzc	39	42	virus	virus	NOUN
cord-002994-1zjrunzc	39	43	(	(	PUNCT
cord-002994-1zjrunzc	39	44	rbv	rbv	PROPN
cord-002994-1zjrunzc	39	45	)	)	PUNCT
cord-002994-1zjrunzc	39	46	(	(	PUNCT
cord-002994-1zjrunzc	39	47	vertebrate	vertebrate	ADJ
cord-002994-1zjrunzc	39	48	-	-	PUNCT
cord-002994-1zjrunzc	39	49	specific	specific	ADJ
cord-002994-1zjrunzc	39	50	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	39	51	,	,	PUNCT
cord-002994-1zjrunzc	39	52	also	also	ADV
cord-002994-1zjrunzc	39	53	known	know	VERB
cord-002994-1zjrunzc	39	54	as	as	ADP
cord-002994-1zjrunzc	39	55	no	no	DET
cord-002994-1zjrunzc	39	56	known	know	VERB
cord-002994-1zjrunzc	39	57	vector	vector	NOUN
cord-002994-1zjrunzc	39	58	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	39	59	(	(	PUNCT
cord-002994-1zjrunzc	39	60	nkvfs	nkvfs	PROPN
cord-002994-1zjrunzc	39	61	)	)	PUNCT
cord-002994-1zjrunzc	39	62	)	)	PUNCT
cord-002994-1zjrunzc	39	63	.	.	PUNCT
cord-002994-1zjrunzc	40	1	we	we	PRON
cord-002994-1zjrunzc	40	2	also	also	ADV
cord-002994-1zjrunzc	40	3	searched	search	VERB
cord-002994-1zjrunzc	40	4	for	for	ADP
cord-002994-1zjrunzc	40	5	evidence	evidence	NOUN
cord-002994-1zjrunzc	40	6	of	of	ADP
cord-002994-1zjrunzc	40	7	informative	informative	ADJ
cord-002994-1zjrunzc	40	8	amino	amino	NOUN
cord-002994-1zjrunzc	40	9	acid	acid	NOUN
cord-002994-1zjrunzc	40	10	sites	site	NOUN
cord-002994-1zjrunzc	40	11	among	among	ADP
cord-002994-1zjrunzc	40	12	bagv	bagv	NOUN
cord-002994-1zjrunzc	40	13	sequences	sequence	NOUN
cord-002994-1zjrunzc	40	14	using	use	VERB
cord-002994-1zjrunzc	40	15	the	the	DET
cord-002994-1zjrunzc	40	16	divein	divein	PROPN
cord-002994-1zjrunzc	40	17	web	web	NOUN
cord-002994-1zjrunzc	40	18	server	server	NOUN
cord-002994-1zjrunzc	40	19	(	(	PUNCT
cord-002994-1zjrunzc	40	20	https://indra.mullins.microbiol.washington.edu/divein/	https://indra.mullins.microbiol.washington.edu/divein/	NOUN
cord-002994-1zjrunzc	40	21	)	)	PUNCT
cord-002994-1zjrunzc	40	22	[	[	PUNCT
cord-002994-1zjrunzc	40	23	19	19	NUM
cord-002994-1zjrunzc	40	24	]	]	PUNCT
cord-002994-1zjrunzc	40	25	.	.	PUNCT
cord-002994-1zjrunzc	41	1	the	the	DET
cord-002994-1zjrunzc	41	2	genetic	genetic	ADJ
cord-002994-1zjrunzc	41	3	divergence	divergence	NOUN
cord-002994-1zjrunzc	41	4	between	between	ADP
cord-002994-1zjrunzc	41	5	previously	previously	ADV
cord-002994-1zjrunzc	41	6	available	available	ADJ
cord-002994-1zjrunzc	41	7	bagv	bagv	NOUN
cord-002994-1zjrunzc	41	8	complete	complete	ADJ
cord-002994-1zjrunzc	41	9	genomes	genome	NOUN
cord-002994-1zjrunzc	41	10	and	and	CCONJ
cord-002994-1zjrunzc	41	11	new	new	ADJ
cord-002994-1zjrunzc	41	12	characterized	characterized	ADJ
cord-002994-1zjrunzc	41	13	sequences	sequence	NOUN
cord-002994-1zjrunzc	41	14	was	be	AUX
cord-002994-1zjrunzc	41	15	also	also	ADV
cord-002994-1zjrunzc	41	16	assessed	assess	VERB
cord-002994-1zjrunzc	41	17	at	at	ADP
cord-002994-1zjrunzc	41	18	the	the	DET
cord-002994-1zjrunzc	41	19	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	41	20	and	and	CCONJ
cord-002994-1zjrunzc	41	21	protein	protein	NOUN
cord-002994-1zjrunzc	41	22	levels	level	NOUN
cord-002994-1zjrunzc	41	23	.	.	PUNCT
cord-002994-1zjrunzc	42	1	prediction	prediction	NOUN
cord-002994-1zjrunzc	42	2	of	of	ADP
cord-002994-1zjrunzc	42	3	n	n	ADJ
cord-002994-1zjrunzc	42	4	-	-	ADJ
cord-002994-1zjrunzc	42	5	glycosylated	glycosylated	ADJ
cord-002994-1zjrunzc	42	6	sites	site	NOUN
cord-002994-1zjrunzc	42	7	on	on	ADP
cord-002994-1zjrunzc	42	8	the	the	DET
cord-002994-1zjrunzc	42	9	genome	genome	NOUN
cord-002994-1zjrunzc	42	10	of	of	ADP
cord-002994-1zjrunzc	42	11	bagv	bagv	PROPN
cord-002994-1zjrunzc	42	12	were	be	AUX
cord-002994-1zjrunzc	42	13	performed	perform	VERB
cord-002994-1zjrunzc	42	14	by	by	ADP
cord-002994-1zjrunzc	42	15	submitting	submit	VERB
cord-002994-1zjrunzc	42	16	complete	complete	ADJ
cord-002994-1zjrunzc	42	17	polyproteins	polyprotein	NOUN
cord-002994-1zjrunzc	42	18	on	on	ADP
cord-002994-1zjrunzc	42	19	online	online	ADJ
cord-002994-1zjrunzc	42	20	version	version	NOUN
cord-002994-1zjrunzc	42	21	of	of	ADP
cord-002994-1zjrunzc	42	22	netnglyc	netnglyc	PROPN
cord-002994-1zjrunzc	42	23	1.0	1.0	NUM
cord-002994-1zjrunzc	42	24	server	server	NOUN
cord-002994-1zjrunzc	42	25	(	(	PUNCT
cord-002994-1zjrunzc	42	26	http://www.cbs.dtu.dk/services/	http://www.cbs.dtu.dk/services/	PROPN
cord-002994-1zjrunzc	42	27	netnglyc/	netnglyc/	PROPN
cord-002994-1zjrunzc	42	28	)	)	PUNCT
cord-002994-1zjrunzc	42	29	.	.	PUNCT
cord-002994-1zjrunzc	43	1	n	n	X
cord-002994-1zjrunzc	43	2	-	-	PUNCT
cord-002994-1zjrunzc	43	3	linked	link	VERB
cord-002994-1zjrunzc	43	4	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	43	5	is	be	AUX
cord-002994-1zjrunzc	43	6	a	a	DET
cord-002994-1zjrunzc	43	7	post	post	ADJ
cord-002994-1zjrunzc	43	8	-	-	ADJ
cord-002994-1zjrunzc	43	9	translational	translational	ADJ
cord-002994-1zjrunzc	43	10	event	event	NOUN
cord-002994-1zjrunzc	43	11	whereby	whereby	SCONJ
cord-002994-1zjrunzc	43	12	carbohydrates	carbohydrate	NOUN
cord-002994-1zjrunzc	43	13	are	be	AUX
cord-002994-1zjrunzc	43	14	added	add	VERB
cord-002994-1zjrunzc	43	15	to	to	ADP
cord-002994-1zjrunzc	43	16	asparagines	asparagine	NOUN
cord-002994-1zjrunzc	43	17	,	,	PUNCT
cord-002994-1zjrunzc	43	18	which	which	PRON
cord-002994-1zjrunzc	43	19	occur	occur	VERB
cord-002994-1zjrunzc	43	20	in	in	ADP
cord-002994-1zjrunzc	43	21	the	the	DET
cord-002994-1zjrunzc	43	22	consensus	consensus	NOUN
cord-002994-1zjrunzc	43	23	sequence	sequence	NOUN
cord-002994-1zjrunzc	43	24	asn	asn	PROPN
cord-002994-1zjrunzc	43	25	-	-	PUNCT
cord-002994-1zjrunzc	43	26	xaa	xaa	PROPN
cord-002994-1zjrunzc	43	27	-	-	PUNCT
cord-002994-1zjrunzc	43	28	ser	ser	PROPN
cord-002994-1zjrunzc	43	29	/	/	SYM
cord-002994-1zjrunzc	43	30	thr	thr	PROPN
cord-002994-1zjrunzc	43	31	,	,	PUNCT
cord-002994-1zjrunzc	43	32	where	where	SCONJ
cord-002994-1zjrunzc	43	33	xaa	xaa	PROPN
cord-002994-1zjrunzc	43	34	is	be	AUX
cord-002994-1zjrunzc	43	35	any	any	DET
cord-002994-1zjrunzc	43	36	amino	amino	NOUN
cord-002994-1zjrunzc	43	37	acid	acid	NOUN
cord-002994-1zjrunzc	43	38	except	except	SCONJ
cord-002994-1zjrunzc	43	39	proline	proline	NOUN
cord-002994-1zjrunzc	43	40	.	.	PUNCT
cord-002994-1zjrunzc	44	1	"	"	PUNCT
cord-002994-1zjrunzc	44	2	potential	potential	ADJ
cord-002994-1zjrunzc	44	3	"	"	PUNCT
cord-002994-1zjrunzc	44	4	scores	score	NOUN
cord-002994-1zjrunzc	44	5	of	of	ADP
cord-002994-1zjrunzc	44	6	predicted	predict	VERB
cord-002994-1zjrunzc	44	7	n	n	ADJ
cord-002994-1zjrunzc	44	8	-	-	ADJ
cord-002994-1zjrunzc	44	9	glycosylated	glycosylated	ADJ
cord-002994-1zjrunzc	44	10	sites	site	NOUN
cord-002994-1zjrunzc	44	11	across	across	ADP
cord-002994-1zjrunzc	44	12	the	the	DET
cord-002994-1zjrunzc	44	13	protein	protein	NOUN
cord-002994-1zjrunzc	44	14	chain	chain	NOUN
cord-002994-1zjrunzc	44	15	from	from	ADP
cord-002994-1zjrunzc	44	16	n	n	NOUN
cord-002994-1zjrunzc	44	17	-	-	PUNCT
cord-002994-1zjrunzc	44	18	to	to	PART
cord-002994-1zjrunzc	44	19	c	c	PROPN
cord-002994-1zjrunzc	44	20	-	-	PUNCT
cord-002994-1zjrunzc	44	21	terminal	terminal	ADJ
cord-002994-1zjrunzc	44	22	were	be	AUX
cord-002994-1zjrunzc	44	23	illustrated	illustrate	VERB
cord-002994-1zjrunzc	44	24	using	use	VERB
cord-002994-1zjrunzc	44	25	the	the	DET
cord-002994-1zjrunzc	44	26	default	default	NOUN
cord-002994-1zjrunzc	44	27	threshold	threshold	NOUN
cord-002994-1zjrunzc	44	28	of	of	ADP
cord-002994-1zjrunzc	44	29	0.5	0.5	NUM
cord-002994-1zjrunzc	44	30	and	and	CCONJ
cord-002994-1zjrunzc	44	31	the	the	DET
cord-002994-1zjrunzc	44	32	"	"	PUNCT
cord-002994-1zjrunzc	44	33	jury	jury	NOUN
cord-002994-1zjrunzc	44	34	agreement	agreement	NOUN
cord-002994-1zjrunzc	44	35	"	"	PUNCT
cord-002994-1zjrunzc	44	36	indicates	indicate	VERB
cord-002994-1zjrunzc	44	37	how	how	SCONJ
cord-002994-1zjrunzc	44	38	many	many	ADJ
cord-002994-1zjrunzc	44	39	of	of	ADP
cord-002994-1zjrunzc	44	40	the	the	DET
cord-002994-1zjrunzc	44	41	nine	nine	NUM
cord-002994-1zjrunzc	44	42	networks	network	NOUN
cord-002994-1zjrunzc	44	43	support	support	VERB
cord-002994-1zjrunzc	44	44	the	the	DET
cord-002994-1zjrunzc	44	45	prediction	prediction	NOUN
cord-002994-1zjrunzc	44	46	[	[	X
cord-002994-1zjrunzc	44	47	20	20	NUM
cord-002994-1zjrunzc	44	48	]	]	PUNCT
cord-002994-1zjrunzc	44	49	.	.	PUNCT
cord-002994-1zjrunzc	45	1	the	the	DET
cord-002994-1zjrunzc	45	2	rnaz	rnaz	NOUN
cord-002994-1zjrunzc	45	3	method	method	NOUN
cord-002994-1zjrunzc	45	4	[	[	X
cord-002994-1zjrunzc	45	5	21	21	NUM
cord-002994-1zjrunzc	45	6	]	]	PUNCT
cord-002994-1zjrunzc	45	7	implemented	implement	VERB
cord-002994-1zjrunzc	45	8	in	in	ADP
cord-002994-1zjrunzc	45	9	the	the	DET
cord-002994-1zjrunzc	45	10	vienna	vienna	PROPN
cord-002994-1zjrunzc	45	11	rna	rna	PROPN
cord-002994-1zjrunzc	45	12	websuite	websuite	NOUN
cord-002994-1zjrunzc	45	13	(	(	PUNCT
cord-002994-1zjrunzc	45	14	http://rna.tbi.univie.ac.at/	http://rna.tbi.univie.ac.at/	INTJ
cord-002994-1zjrunzc	45	15	)	)	PUNCT
cord-002994-1zjrunzc	46	1	[	[	PUNCT
cord-002994-1zjrunzc	46	2	22	22	NUM
cord-002994-1zjrunzc	46	3	]	]	PUNCT
cord-002994-1zjrunzc	46	4	was	be	AUX
cord-002994-1zjrunzc	46	5	used	use	VERB
cord-002994-1zjrunzc	46	6	to	to	PART
cord-002994-1zjrunzc	46	7	detect	detect	VERB
cord-002994-1zjrunzc	46	8	thermodynamically	thermodynamically	ADV
cord-002994-1zjrunzc	46	9	stable	stable	ADJ
cord-002994-1zjrunzc	46	10	and	and	CCONJ
cord-002994-1zjrunzc	46	11	evolutionarily	evolutionarily	ADV
cord-002994-1zjrunzc	46	12	conserved	conserve	VERB
cord-002994-1zjrunzc	46	13	structural	structural	ADJ
cord-002994-1zjrunzc	46	14	rna	rna	PROPN
cord-002994-1zjrunzc	46	15	domains	domain	NOUN
cord-002994-1zjrunzc	46	16	on	on	ADP
cord-002994-1zjrunzc	46	17	complete	complete	ADJ
cord-002994-1zjrunzc	46	18	non	non	ADJ
cord-002994-1zjrunzc	46	19	-	-	ADJ
cord-002994-1zjrunzc	46	20	coding	coding	ADJ
cord-002994-1zjrunzc	46	21	regions	region	NOUN
cord-002994-1zjrunzc	46	22	of	of	ADP
cord-002994-1zjrunzc	46	23	the	the	DET
cord-002994-1zjrunzc	46	24	11	11	NUM
cord-002994-1zjrunzc	46	25	west	west	PROPN
cord-002994-1zjrunzc	46	26	african	african	ADJ
cord-002994-1zjrunzc	46	27	bagv	bagv	PROPN
cord-002994-1zjrunzc	46	28	isolates	isolate	VERB
cord-002994-1zjrunzc	46	29	characterized	characterize	VERB
cord-002994-1zjrunzc	46	30	in	in	ADP
cord-002994-1zjrunzc	46	31	this	this	DET
cord-002994-1zjrunzc	46	32	study	study	NOUN
cord-002994-1zjrunzc	46	33	and	and	CCONJ
cord-002994-1zjrunzc	46	34	the	the	DET
cord-002994-1zjrunzc	46	35	isolates	isolate	NOUN
cord-002994-1zjrunzc	46	36	from	from	ADP
cord-002994-1zjrunzc	46	37	spain	spain	PROPN
cord-002994-1zjrunzc	46	38	and	and	CCONJ
cord-002994-1zjrunzc	46	39	car	car	NOUN
cord-002994-1zjrunzc	46	40	,	,	PUNCT
cord-002994-1zjrunzc	46	41	because	because	SCONJ
cord-002994-1zjrunzc	46	42	complete	complete	ADJ
cord-002994-1zjrunzc	46	43	non	non	ADJ
cord-002994-1zjrunzc	46	44	-	-	ADJ
cord-002994-1zjrunzc	46	45	coding	coding	ADJ
cord-002994-1zjrunzc	46	46	sequences	sequence	NOUN
cord-002994-1zjrunzc	46	47	are	be	AUX
cord-002994-1zjrunzc	46	48	not	not	PART
cord-002994-1zjrunzc	46	49	currently	currently	ADV
cord-002994-1zjrunzc	46	50	available	available	ADJ
cord-002994-1zjrunzc	46	51	for	for	ADP
cord-002994-1zjrunzc	46	52	the	the	DET
cord-002994-1zjrunzc	46	53	isolate	isolate	NOUN
cord-002994-1zjrunzc	46	54	from	from	ADP
cord-002994-1zjrunzc	46	55	india	india	PROPN
cord-002994-1zjrunzc	46	56	.	.	PUNCT
cord-002994-1zjrunzc	47	1	the	the	DET
cord-002994-1zjrunzc	47	2	rnaz	rnaz	PROPN
cord-002994-1zjrunzc	47	3	method	method	NOUN
cord-002994-1zjrunzc	47	4	use	use	VERB
cord-002994-1zjrunzc	47	5	an	an	DET
cord-002994-1zjrunzc	47	6	algorithm	algorithm	NOUN
cord-002994-1zjrunzc	47	7	which	which	PRON
cord-002994-1zjrunzc	47	8	testing	test	VERB
cord-002994-1zjrunzc	47	9	a	a	DET
cord-002994-1zjrunzc	47	10	large	large	ADJ
cord-002994-1zjrunzc	47	11	set	set	NOUN
cord-002994-1zjrunzc	47	12	of	of	ADP
cord-002994-1zjrunzc	47	13	well	well	ADV
cord-002994-1zjrunzc	47	14	-	-	PUNCT
cord-002994-1zjrunzc	47	15	known	know	VERB
cord-002994-1zjrunzc	47	16	conserved	conserved	ADJ
cord-002994-1zjrunzc	47	17	structural	structural	ADJ
cord-002994-1zjrunzc	47	18	rna	rna	PROPN
cord-002994-1zjrunzc	47	19	domains	domain	NOUN
cord-002994-1zjrunzc	47	20	and	and	CCONJ
cord-002994-1zjrunzc	47	21	reports	report	VERB
cord-002994-1zjrunzc	47	22	a	a	DET
cord-002994-1zjrunzc	47	23	"	"	PUNCT
cord-002994-1zjrunzc	47	24	rna	rna	NOUN
cord-002994-1zjrunzc	47	25	classification	classification	NOUN
cord-002994-1zjrunzc	47	26	probability	probability	NOUN
cord-002994-1zjrunzc	47	27	"	"	PUNCT
cord-002994-1zjrunzc	47	28	or	or	CCONJ
cord-002994-1zjrunzc	47	29	p	p	NOUN
cord-002994-1zjrunzc	47	30	-	-	PUNCT
cord-002994-1zjrunzc	47	31	value	value	NOUN
cord-002994-1zjrunzc	47	32	as	as	ADP
cord-002994-1zjrunzc	47	33	a	a	DET
cord-002994-1zjrunzc	47	34	measure	measure	NOUN
cord-002994-1zjrunzc	47	35	of	of	ADP
cord-002994-1zjrunzc	47	36	thermodynamic	thermodynamic	ADJ
cord-002994-1zjrunzc	47	37	stability	stability	NOUN
cord-002994-1zjrunzc	47	38	.	.	PUNCT
cord-002994-1zjrunzc	48	1	structural	structural	ADJ
cord-002994-1zjrunzc	48	2	rna	rna	PROPN
cord-002994-1zjrunzc	48	3	domains	domain	NOUN
cord-002994-1zjrunzc	48	4	with	with	ADP
cord-002994-1zjrunzc	48	5	p	p	PROPN
cord-002994-1zjrunzc	48	6	>	>	SYM
cord-002994-1zjrunzc	48	7	0.5	0.5	NUM
cord-002994-1zjrunzc	48	8	are	be	AUX
cord-002994-1zjrunzc	48	9	classified	classify	VERB
cord-002994-1zjrunzc	48	10	as	as	ADP
cord-002994-1zjrunzc	48	11	stable	stable	ADJ
cord-002994-1zjrunzc	48	12	[	[	X
cord-002994-1zjrunzc	48	13	21	21	NUM
cord-002994-1zjrunzc	48	14	]	]	PUNCT
cord-002994-1zjrunzc	48	15	.	.	PUNCT
cord-002994-1zjrunzc	49	1	furthermore	furthermore	ADV
cord-002994-1zjrunzc	49	2	,	,	PUNCT
cord-002994-1zjrunzc	49	3	the	the	DET
cord-002994-1zjrunzc	49	4	optimal	optimal	ADJ
cord-002994-1zjrunzc	49	5	secondary	secondary	ADJ
cord-002994-1zjrunzc	49	6	structures	structure	NOUN
cord-002994-1zjrunzc	49	7	were	be	AUX
cord-002994-1zjrunzc	49	8	predicted	predict	VERB
cord-002994-1zjrunzc	49	9	with	with	ADP
cord-002994-1zjrunzc	49	10	a	a	DET
cord-002994-1zjrunzc	49	11	minimum	minimum	ADJ
cord-002994-1zjrunzc	49	12	free	free	ADJ
cord-002994-1zjrunzc	49	13	energy	energy	NOUN
cord-002994-1zjrunzc	49	14	using	use	VERB
cord-002994-1zjrunzc	49	15	the	the	DET
cord-002994-1zjrunzc	49	16	rnaalifold	rnaalifold	ADJ
cord-002994-1zjrunzc	49	17	method	method	NOUN
cord-002994-1zjrunzc	49	18	[	[	X
cord-002994-1zjrunzc	49	19	23	23	NUM
cord-002994-1zjrunzc	49	20	]	]	PUNCT
cord-002994-1zjrunzc	49	21	implemented	implement	VERB
cord-002994-1zjrunzc	49	22	also	also	ADV
cord-002994-1zjrunzc	49	23	in	in	ADP
cord-002994-1zjrunzc	49	24	the	the	DET
cord-002994-1zjrunzc	49	25	vienna	vienna	PROPN
cord-002994-1zjrunzc	49	26	rna	rna	PROPN
cord-002994-1zjrunzc	49	27	websuite	websuite	NOUN
cord-002994-1zjrunzc	49	28	that	that	PRON
cord-002994-1zjrunzc	49	29	use	use	VERB
cord-002994-1zjrunzc	49	30	a	a	DET
cord-002994-1zjrunzc	49	31	dynamic	dynamic	ADJ
cord-002994-1zjrunzc	49	32	programming	programming	NOUN
cord-002994-1zjrunzc	49	33	algorithm	algorithm	NOUN
cord-002994-1zjrunzc	49	34	with	with	ADP
cord-002994-1zjrunzc	49	35	rna	rna	NOUN
cord-002994-1zjrunzc	49	36	parameters	parameter	NOUN
cord-002994-1zjrunzc	49	37	as	as	SCONJ
cord-002994-1zjrunzc	49	38	previously	previously	ADV
cord-002994-1zjrunzc	49	39	described	describe	VERB
cord-002994-1zjrunzc	49	40	[	[	PUNCT
cord-002994-1zjrunzc	49	41	24	24	NUM
cord-002994-1zjrunzc	49	42	]	]	PUNCT
cord-002994-1zjrunzc	49	43	.	.	PUNCT
cord-002994-1zjrunzc	50	1	furthermore	furthermore	ADV
cord-002994-1zjrunzc	50	2	,	,	PUNCT
cord-002994-1zjrunzc	50	3	previously	previously	ADV
cord-002994-1zjrunzc	50	4	described	describe	VERB
cord-002994-1zjrunzc	50	5	organization	organization	NOUN
cord-002994-1zjrunzc	50	6	of	of	ADP
cord-002994-1zjrunzc	50	7	conserved	conserved	PROPN
cord-002994-1zjrunzc	50	8	sequences	sequence	NOUN
cord-002994-1zjrunzc	50	9	(	(	PUNCT
cord-002994-1zjrunzc	50	10	cs	cs	INTJ
cord-002994-1zjrunzc	50	11	)	)	PUNCT
cord-002994-1zjrunzc	50	12	[	[	PUNCT
cord-002994-1zjrunzc	50	13	3	3	NUM
cord-002994-1zjrunzc	50	14	]	]	PUNCT
cord-002994-1zjrunzc	50	15	was	be	AUX
cord-002994-1zjrunzc	50	16	analyzed	analyze	VERB
cord-002994-1zjrunzc	50	17	on	on	ADP
cord-002994-1zjrunzc	50	18	predicted	predict	VERB
cord-002994-1zjrunzc	50	19	secondary	secondary	ADJ
cord-002994-1zjrunzc	50	20	structures	structure	NOUN
cord-002994-1zjrunzc	50	21	of	of	ADP
cord-002994-1zjrunzc	50	22	the	the	DET
cord-002994-1zjrunzc	50	23	3	3	NUM
cord-002994-1zjrunzc	50	24	utr	utr	NOUN
cord-002994-1zjrunzc	50	25	,	,	PUNCT
cord-002994-1zjrunzc	50	26	considering	consider	VERB
cord-002994-1zjrunzc	50	27	possible	possible	ADJ
cord-002994-1zjrunzc	50	28	repetitions	repetition	NOUN
cord-002994-1zjrunzc	50	29	of	of	ADP
cord-002994-1zjrunzc	50	30	these	these	DET
cord-002994-1zjrunzc	50	31	cs	c	NOUN
cord-002994-1zjrunzc	50	32	.	.	PUNCT
cord-002994-1zjrunzc	51	1	thus	thus	ADV
cord-002994-1zjrunzc	51	2	,	,	PUNCT
cord-002994-1zjrunzc	51	3	a	a	DET
cord-002994-1zjrunzc	51	4	conserved	conserved	ADJ
cord-002994-1zjrunzc	51	5	sequence	sequence	NOUN
cord-002994-1zjrunzc	51	6	was	be	AUX
cord-002994-1zjrunzc	51	7	considered	consider	VERB
cord-002994-1zjrunzc	51	8	as	as	ADV
cord-002994-1zjrunzc	51	9	imperfect	imperfect	ADJ
cord-002994-1zjrunzc	51	10	when	when	SCONJ
cord-002994-1zjrunzc	51	11	it	it	PRON
cord-002994-1zjrunzc	51	12	presented	present	VERB
cord-002994-1zjrunzc	51	13	three	three	NUM
cord-002994-1zjrunzc	51	14	or	or	CCONJ
cord-002994-1zjrunzc	51	15	more	more	ADJ
cord-002994-1zjrunzc	51	16	differences	difference	NOUN
cord-002994-1zjrunzc	51	17	with	with	ADP
cord-002994-1zjrunzc	51	18	corresponding	correspond	VERB
cord-002994-1zjrunzc	51	19	consensus	consensus	NOUN
cord-002994-1zjrunzc	51	20	sequence	sequence	NOUN
cord-002994-1zjrunzc	51	21	previously	previously	ADV
cord-002994-1zjrunzc	51	22	described	describe	VERB
cord-002994-1zjrunzc	51	23	[	[	SYM
cord-002994-1zjrunzc	51	24	3	3	NUM
cord-002994-1zjrunzc	51	25	]	]	PUNCT
cord-002994-1zjrunzc	51	26	,	,	PUNCT
cord-002994-1zjrunzc	51	27	marked	mark	VERB
cord-002994-1zjrunzc	51	28	by	by	ADP
cord-002994-1zjrunzc	51	29	a	a	DET
cord-002994-1zjrunzc	51	30	deletion	deletion	NOUN
cord-002994-1zjrunzc	51	31	,	,	PUNCT
cord-002994-1zjrunzc	51	32	an	an	DET
cord-002994-1zjrunzc	51	33	insertion	insertion	NOUN
cord-002994-1zjrunzc	51	34	,	,	PUNCT
cord-002994-1zjrunzc	51	35	or	or	CCONJ
cord-002994-1zjrunzc	51	36	a	a	DET
cord-002994-1zjrunzc	51	37	substitution	substitution	NOUN
cord-002994-1zjrunzc	51	38	.	.	PUNCT
cord-002994-1zjrunzc	52	1	a	a	DET
cord-002994-1zjrunzc	52	2	bayesian	bayesian	NOUN
cord-002994-1zjrunzc	52	3	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	52	4	analysis	analysis	NOUN
cord-002994-1zjrunzc	52	5	for	for	ADP
cord-002994-1zjrunzc	52	6	estimation	estimation	NOUN
cord-002994-1zjrunzc	52	7	of	of	ADP
cord-002994-1zjrunzc	52	8	data	datum	NOUN
cord-002994-1zjrunzc	52	9	quality	quality	NOUN
cord-002994-1zjrunzc	52	10	and	and	CCONJ
cord-002994-1zjrunzc	52	11	selection	selection	NOUN
cord-002994-1zjrunzc	52	12	of	of	ADP
cord-002994-1zjrunzc	52	13	the	the	DET
cord-002994-1zjrunzc	52	14	best	well	ADV
cord-002994-1zjrunzc	52	15	-	-	PUNCT
cord-002994-1zjrunzc	52	16	fit	fit	ADJ
cord-002994-1zjrunzc	52	17	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	52	18	substitution	substitution	NOUN
cord-002994-1zjrunzc	52	19	model	model	NOUN
cord-002994-1zjrunzc	52	20	were	be	AUX
cord-002994-1zjrunzc	52	21	performed	perform	VERB
cord-002994-1zjrunzc	52	22	using	use	VERB
cord-002994-1zjrunzc	52	23	mega	mega	NOUN
cord-002994-1zjrunzc	52	24	6.0	6.0	NUM
cord-002994-1zjrunzc	52	25	(	(	PUNCT
cord-002994-1zjrunzc	52	26	https://www.megasoftware.net/	https://www.megasoftware.net/	NOUN
cord-002994-1zjrunzc	52	27	)	)	PUNCT
cord-002994-1zjrunzc	52	28	with	with	ADP
cord-002994-1zjrunzc	52	29	a	a	DET
cord-002994-1zjrunzc	52	30	discrete	discrete	ADJ
cord-002994-1zjrunzc	52	31	gamma	gamma	NOUN
cord-002994-1zjrunzc	52	32	distribution	distribution	NOUN
cord-002994-1zjrunzc	52	33	(	(	PUNCT
cord-002994-1zjrunzc	52	34	+	+	X
cord-002994-1zjrunzc	52	35	g	g	NOUN
cord-002994-1zjrunzc	52	36	)	)	PUNCT
cord-002994-1zjrunzc	52	37	with	with	ADP
cord-002994-1zjrunzc	52	38	5	5	NUM
cord-002994-1zjrunzc	52	39	rate	rate	NOUN
cord-002994-1zjrunzc	52	40	categories	category	NOUN
cord-002994-1zjrunzc	52	41	.	.	PUNCT
cord-002994-1zjrunzc	53	1	thus	thus	ADV
cord-002994-1zjrunzc	53	2	,	,	PUNCT
cord-002994-1zjrunzc	53	3	a	a	DET
cord-002994-1zjrunzc	53	4	total	total	NOUN
cord-002994-1zjrunzc	53	5	of	of	ADP
cord-002994-1zjrunzc	53	6	24	24	NUM
cord-002994-1zjrunzc	53	7	different	different	ADJ
cord-002994-1zjrunzc	53	8	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	53	9	substitution	substitution	NOUN
cord-002994-1zjrunzc	53	10	models	model	NOUN
cord-002994-1zjrunzc	53	11	were	be	AUX
cord-002994-1zjrunzc	53	12	tested	test	VERB
cord-002994-1zjrunzc	53	13	and	and	CCONJ
cord-002994-1zjrunzc	53	14	model	model	NOUN
cord-002994-1zjrunzc	53	15	with	with	ADP
cord-002994-1zjrunzc	53	16	the	the	DET
cord-002994-1zjrunzc	53	17	lowest	low	ADJ
cord-002994-1zjrunzc	53	18	bic	bic	NOUN
cord-002994-1zjrunzc	53	19	score	score	NOUN
cord-002994-1zjrunzc	53	20	(	(	PUNCT
cord-002994-1zjrunzc	53	21	bayesian	bayesian	ADJ
cord-002994-1zjrunzc	53	22	information	information	NOUN
cord-002994-1zjrunzc	53	23	criterion	criterion	NOUN
cord-002994-1zjrunzc	53	24	)	)	PUNCT
cord-002994-1zjrunzc	53	25	was	be	AUX
cord-002994-1zjrunzc	53	26	considered	consider	VERB
cord-002994-1zjrunzc	53	27	to	to	PART
cord-002994-1zjrunzc	53	28	describe	describe	VERB
cord-002994-1zjrunzc	53	29	the	the	DET
cord-002994-1zjrunzc	53	30	best	good	ADJ
cord-002994-1zjrunzc	53	31	substitution	substitution	NOUN
cord-002994-1zjrunzc	53	32	pattern	pattern	NOUN
cord-002994-1zjrunzc	53	33	.	.	PUNCT
cord-002994-1zjrunzc	54	1	further	further	ADJ
cord-002994-1zjrunzc	54	2	parameters	parameter	NOUN
cord-002994-1zjrunzc	54	3	as	as	ADP
cord-002994-1zjrunzc	54	4	aicc	aicc	NOUN
cord-002994-1zjrunzc	54	5	value	value	NOUN
cord-002994-1zjrunzc	54	6	(	(	PUNCT
cord-002994-1zjrunzc	54	7	akaike	akaike	ADJ
cord-002994-1zjrunzc	54	8	information	information	NOUN
cord-002994-1zjrunzc	54	9	criterion	criterion	NOUN
cord-002994-1zjrunzc	54	10	,	,	PUNCT
cord-002994-1zjrunzc	54	11	corrected	correct	VERB
cord-002994-1zjrunzc	54	12	)	)	PUNCT
cord-002994-1zjrunzc	54	13	and	and	CCONJ
cord-002994-1zjrunzc	54	14	maximum	maximum	ADJ
cord-002994-1zjrunzc	54	15	likelihood	likelihood	NOUN
cord-002994-1zjrunzc	54	16	value	value	NOUN
cord-002994-1zjrunzc	54	17	(	(	PUNCT
cord-002994-1zjrunzc	54	18	lnl	lnl	PROPN
cord-002994-1zjrunzc	54	19	)	)	PUNCT
cord-002994-1zjrunzc	54	20	are	be	AUX
cord-002994-1zjrunzc	54	21	also	also	ADV
cord-002994-1zjrunzc	54	22	estimated	estimate	VERB
cord-002994-1zjrunzc	54	23	[	[	X
cord-002994-1zjrunzc	54	24	25	25	NUM
cord-002994-1zjrunzc	54	25	]	]	PUNCT
cord-002994-1zjrunzc	54	26	.	.	PUNCT
cord-002994-1zjrunzc	55	1	a	a	DET
cord-002994-1zjrunzc	55	2	maximum	maximum	ADJ
cord-002994-1zjrunzc	55	3	likelihood	likelihood	NOUN
cord-002994-1zjrunzc	55	4	tree	tree	NOUN
cord-002994-1zjrunzc	55	5	was	be	AUX
cord-002994-1zjrunzc	55	6	then	then	ADV
cord-002994-1zjrunzc	55	7	constructed	construct	VERB
cord-002994-1zjrunzc	55	8	with	with	ADP
cord-002994-1zjrunzc	55	9	complete	complete	ADJ
cord-002994-1zjrunzc	55	10	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	55	11	sequences	sequence	NOUN
cord-002994-1zjrunzc	55	12	from	from	ADP
cord-002994-1zjrunzc	55	13	insect	insect	NOUN
cord-002994-1zjrunzc	55	14	-	-	PUNCT
cord-002994-1zjrunzc	55	15	specific	specific	ADJ
cord-002994-1zjrunzc	55	16	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	55	17	,	,	PUNCT
cord-002994-1zjrunzc	55	18	no	no	DET
cord-002994-1zjrunzc	55	19	known	know	VERB
cord-002994-1zjrunzc	55	20	vector	vector	NOUN
cord-002994-1zjrunzc	55	21	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	55	22	,	,	PUNCT
cord-002994-1zjrunzc	55	23	tick	tick	NOUN
cord-002994-1zjrunzc	55	24	-	-	PUNCT
cord-002994-1zjrunzc	55	25	born	bear	VERB
cord-002994-1zjrunzc	55	26	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	55	27	,	,	PUNCT
cord-002994-1zjrunzc	55	28	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	55	29	-	-	PUNCT
cord-002994-1zjrunzc	55	30	borne	bear	VERB
cord-002994-1zjrunzc	55	31	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	55	32	,	,	PUNCT
cord-002994-1zjrunzc	55	33	the	the	DET
cord-002994-1zjrunzc	55	34	11	11	NUM
cord-002994-1zjrunzc	55	35	orfs	orfs	NOUN
cord-002994-1zjrunzc	55	36	from	from	ADP
cord-002994-1zjrunzc	55	37	new	new	ADJ
cord-002994-1zjrunzc	55	38	characterized	characterized	ADJ
cord-002994-1zjrunzc	55	39	west	west	PROPN
cord-002994-1zjrunzc	55	40	african	african	ADJ
cord-002994-1zjrunzc	55	41	bagv	bagv	PROPN
cord-002994-1zjrunzc	55	42	isolates	isolates	PROPN
cord-002994-1zjrunzc	55	43	and	and	CCONJ
cord-002994-1zjrunzc	55	44	bagv	bagv	NOUN
cord-002994-1zjrunzc	55	45	sequences	sequence	NOUN
cord-002994-1zjrunzc	55	46	previously	previously	ADV
cord-002994-1zjrunzc	55	47	available	available	ADJ
cord-002994-1zjrunzc	55	48	from	from	ADP
cord-002994-1zjrunzc	55	49	spain	spain	PROPN
cord-002994-1zjrunzc	55	50	(	(	PUNCT
cord-002994-1zjrunzc	55	51	hq644143	hq644143	PROPN
cord-002994-1zjrunzc	55	52	-	-	PUNCT
cord-002994-1zjrunzc	55	53	4	4	NUM
cord-002994-1zjrunzc	55	54	,	,	PUNCT
cord-002994-1zjrunzc	55	55	kr108244	kr108244	NOUN
cord-002994-1zjrunzc	55	56	-	-	PUNCT
cord-002994-1zjrunzc	55	57	6	6	NUM
cord-002994-1zjrunzc	55	58	)	)	PUNCT
cord-002994-1zjrunzc	55	59	,	,	PUNCT
cord-002994-1zjrunzc	55	60	india	india	PROPN
cord-002994-1zjrunzc	55	61	(	(	PUNCT
cord-002994-1zjrunzc	55	62	eu684972	eu684972	PROPN
cord-002994-1zjrunzc	55	63	)	)	PUNCT
cord-002994-1zjrunzc	55	64	and	and	CCONJ
cord-002994-1zjrunzc	55	65	car	car	NOUN
cord-002994-1zjrunzc	55	66	(	(	PUNCT
cord-002994-1zjrunzc	55	67	ay632545	ay632545	PROPN
cord-002994-1zjrunzc	55	68	)	)	PUNCT
cord-002994-1zjrunzc	55	69	.	.	PUNCT
cord-002994-1zjrunzc	56	1	tree	tree	NOUN
cord-002994-1zjrunzc	56	2	was	be	AUX
cord-002994-1zjrunzc	56	3	inferred	infer	VERB
cord-002994-1zjrunzc	56	4	using	use	VERB
cord-002994-1zjrunzc	56	5	fasttree	fasttree	NOUN
cord-002994-1zjrunzc	56	6	v2.1.7	v2.1.7	NOUN
cord-002994-1zjrunzc	56	7	(	(	PUNCT
cord-002994-1zjrunzc	56	8	http://www.microbesonline.org/fasttree/	http://www.microbesonline.org/fasttree/	PROPN
cord-002994-1zjrunzc	56	9	)	)	PUNCT
cord-002994-1zjrunzc	57	1	[	[	PUNCT
cord-002994-1zjrunzc	57	2	26	26	NUM
cord-002994-1zjrunzc	57	3	]	]	PUNCT
cord-002994-1zjrunzc	57	4	,	,	PUNCT
cord-002994-1zjrunzc	57	5	where	where	SCONJ
cord-002994-1zjrunzc	57	6	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	57	7	substitution	substitution	NOUN
cord-002994-1zjrunzc	57	8	was	be	AUX
cord-002994-1zjrunzc	57	9	modeled	model	VERB
cord-002994-1zjrunzc	57	10	using	use	VERB
cord-002994-1zjrunzc	57	11	general	general	ADJ
cord-002994-1zjrunzc	57	12	time	time	NOUN
cord-002994-1zjrunzc	57	13	-	-	PUNCT
cord-002994-1zjrunzc	57	14	reversible	reversible	ADJ
cord-002994-1zjrunzc	57	15	with	with	ADP
cord-002994-1zjrunzc	57	16	a	a	DET
cord-002994-1zjrunzc	57	17	proportion	proportion	NOUN
cord-002994-1zjrunzc	57	18	of	of	ADP
cord-002994-1zjrunzc	57	19	invariant	invariant	ADJ
cord-002994-1zjrunzc	57	20	sites	site	NOUN
cord-002994-1zjrunzc	57	21	(	(	PUNCT
cord-002994-1zjrunzc	57	22	gtr+i	gtr+i	PROPN
cord-002994-1zjrunzc	57	23	)	)	PUNCT
cord-002994-1zjrunzc	57	24	.	.	PUNCT
cord-002994-1zjrunzc	58	1	nodes	node	NOUN
cord-002994-1zjrunzc	58	2	were	be	AUX
cord-002994-1zjrunzc	58	3	labeled	label	VERB
cord-002994-1zjrunzc	58	4	with	with	ADP
cord-002994-1zjrunzc	58	5	local	local	ADJ
cord-002994-1zjrunzc	58	6	support	support	NOUN
cord-002994-1zjrunzc	58	7	values	value	NOUN
cord-002994-1zjrunzc	58	8	,	,	PUNCT
cord-002994-1zjrunzc	58	9	which	which	PRON
cord-002994-1zjrunzc	58	10	were	be	AUX
cord-002994-1zjrunzc	58	11	computed	compute	VERB
cord-002994-1zjrunzc	58	12	with	with	ADP
cord-002994-1zjrunzc	58	13	the	the	DET
cord-002994-1zjrunzc	58	14	shimodaira	shimodaira	PROPN
cord-002994-1zjrunzc	58	15	-	-	PUNCT
cord-002994-1zjrunzc	58	16	hasegawa	hasegawa	PROPN
cord-002994-1zjrunzc	58	17	test	test	NOUN
cord-002994-1zjrunzc	58	18	(	(	PUNCT
cord-002994-1zjrunzc	58	19	sh	sh	NOUN
cord-002994-1zjrunzc	58	20	-	-	PUNCT
cord-002994-1zjrunzc	58	21	like	like	ADJ
cord-002994-1zjrunzc	58	22	)	)	PUNCT
cord-002994-1zjrunzc	58	23	for	for	ADP
cord-002994-1zjrunzc	58	24	5000	5000	NUM
cord-002994-1zjrunzc	58	25	replications	replication	NOUN
cord-002994-1zjrunzc	58	26	.	.	PUNCT
cord-002994-1zjrunzc	59	1	topology	topology	NOUN
cord-002994-1zjrunzc	59	2	was	be	AUX
cord-002994-1zjrunzc	59	3	visualized	visualize	VERB
cord-002994-1zjrunzc	59	4	by	by	ADP
cord-002994-1zjrunzc	59	5	figtree	figtree	ADJ
cord-002994-1zjrunzc	59	6	v.1.4.2	v.1.4.2	NOUN
cord-002994-1zjrunzc	59	7	(	(	PUNCT
cord-002994-1zjrunzc	59	8	http://tree.bio.ed.ac.uk/software/figtree/	http://tree.bio.ed.ac.uk/software/figtree/	PROPN
cord-002994-1zjrunzc	59	9	)	)	PUNCT
cord-002994-1zjrunzc	59	10	.	.	PUNCT
cord-002994-1zjrunzc	60	1	to	to	PART
cord-002994-1zjrunzc	60	2	prevent	prevent	VERB
cord-002994-1zjrunzc	60	3	potential	potential	ADJ
cord-002994-1zjrunzc	60	4	biases	bias	NOUN
cord-002994-1zjrunzc	60	5	during	during	ADP
cord-002994-1zjrunzc	60	6	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	60	7	inference	inference	NOUN
cord-002994-1zjrunzc	60	8	due	due	ADP
cord-002994-1zjrunzc	60	9	to	to	ADP
cord-002994-1zjrunzc	60	10	recombination	recombination	NOUN
cord-002994-1zjrunzc	60	11	,	,	PUNCT
cord-002994-1zjrunzc	60	12	all	all	DET
cord-002994-1zjrunzc	60	13	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	60	14	sequences	sequence	NOUN
cord-002994-1zjrunzc	60	15	were	be	AUX
cord-002994-1zjrunzc	60	16	analyzed	analyze	VERB
cord-002994-1zjrunzc	60	17	using	use	VERB
cord-002994-1zjrunzc	60	18	seven	seven	NUM
cord-002994-1zjrunzc	60	19	methods	method	NOUN
cord-002994-1zjrunzc	60	20	(	(	PUNCT
cord-002994-1zjrunzc	60	21	rdp	rdp	PROPN
cord-002994-1zjrunzc	60	22	,	,	PUNCT
cord-002994-1zjrunzc	60	23	geneconv	geneconv	PROPN
cord-002994-1zjrunzc	60	24	,	,	PUNCT
cord-002994-1zjrunzc	60	25	maxchi	maxchi	PROPN
cord-002994-1zjrunzc	60	26	,	,	PUNCT
cord-002994-1zjrunzc	60	27	bootscan	bootscan	PROPN
cord-002994-1zjrunzc	60	28	,	,	PUNCT
cord-002994-1zjrunzc	60	29	chimaera	chimaera	NOUN
cord-002994-1zjrunzc	60	30	,	,	PUNCT
cord-002994-1zjrunzc	60	31	siscan	siscan	PROPN
cord-002994-1zjrunzc	60	32	,	,	PUNCT
cord-002994-1zjrunzc	60	33	and	and	CCONJ
cord-002994-1zjrunzc	60	34	3seq	3seq	NUM
cord-002994-1zjrunzc	60	35	)	)	PUNCT
cord-002994-1zjrunzc	60	36	implemented	implement	VERB
cord-002994-1zjrunzc	60	37	in	in	ADP
cord-002994-1zjrunzc	60	38	the	the	DET
cord-002994-1zjrunzc	60	39	recombination	recombination	NOUN
cord-002994-1zjrunzc	60	40	detection	detection	NOUN
cord-002994-1zjrunzc	60	41	program	program	NOUN
cord-002994-1zjrunzc	60	42	(	(	PUNCT
cord-002994-1zjrunzc	60	43	rdp4beta	rdp4beta	PROPN
cord-002994-1zjrunzc	60	44	4.8	4.8	NUM
cord-002994-1zjrunzc	60	45	)	)	PUNCT
cord-002994-1zjrunzc	60	46	to	to	PART
cord-002994-1zjrunzc	60	47	uncover	uncover	VERB
cord-002994-1zjrunzc	60	48	evidence	evidence	NOUN
cord-002994-1zjrunzc	60	49	for	for	ADP
cord-002994-1zjrunzc	60	50	recombination	recombination	NOUN
cord-002994-1zjrunzc	60	51	events	event	NOUN
cord-002994-1zjrunzc	60	52	[	[	X
cord-002994-1zjrunzc	60	53	27	27	NUM
cord-002994-1zjrunzc	60	54	]	]	PUNCT
cord-002994-1zjrunzc	60	55	.	.	PUNCT
cord-002994-1zjrunzc	61	1	the	the	DET
cord-002994-1zjrunzc	61	2	disentangle	disentangle	NOUN
cord-002994-1zjrunzc	61	3	recombination	recombination	NOUN
cord-002994-1zjrunzc	61	4	signals	signal	NOUN
cord-002994-1zjrunzc	61	5	option	option	NOUN
cord-002994-1zjrunzc	61	6	was	be	AUX
cord-002994-1zjrunzc	61	7	"	"	PUNCT
cord-002994-1zjrunzc	61	8	on	on	ADP
cord-002994-1zjrunzc	61	9	"	"	PUNCT
cord-002994-1zjrunzc	61	10	and	and	CCONJ
cord-002994-1zjrunzc	61	11	the	the	DET
cord-002994-1zjrunzc	61	12	linear	linear	ADJ
cord-002994-1zjrunzc	61	13	sequence	sequence	NOUN
cord-002994-1zjrunzc	61	14	setting	setting	NOUN
cord-002994-1zjrunzc	61	15	was	be	AUX
cord-002994-1zjrunzc	61	16	used	use	VERB
cord-002994-1zjrunzc	61	17	.	.	PUNCT
cord-002994-1zjrunzc	62	1	the	the	DET
cord-002994-1zjrunzc	62	2	remaining	remain	VERB
cord-002994-1zjrunzc	62	3	settings	setting	NOUN
cord-002994-1zjrunzc	62	4	were	be	AUX
cord-002994-1zjrunzc	62	5	kept	keep	VERB
cord-002994-1zjrunzc	62	6	at	at	ADP
cord-002994-1zjrunzc	62	7	their	their	PRON
cord-002994-1zjrunzc	62	8	default	default	NOUN
cord-002994-1zjrunzc	62	9	values	value	NOUN
cord-002994-1zjrunzc	62	10	.	.	PUNCT
cord-002994-1zjrunzc	63	1	only	only	ADV
cord-002994-1zjrunzc	63	2	events	event	NOUN
cord-002994-1zjrunzc	63	3	with	with	ADP
cord-002994-1zjrunzc	63	4	p	p	NOUN
cord-002994-1zjrunzc	63	5	-	-	PUNCT
cord-002994-1zjrunzc	63	6	values	value	NOUN
cord-002994-1zjrunzc	63	7	<	<	X
cord-002994-1zjrunzc	63	8	1	1	NUM
cord-002994-1zjrunzc	63	9	×	×	NOUN
cord-002994-1zjrunzc	63	10	10	10	NUM
cord-002994-1zjrunzc	63	11	−6	−6	NUM
cord-002994-1zjrunzc	63	12	that	that	PRON
cord-002994-1zjrunzc	63	13	were	be	AUX
cord-002994-1zjrunzc	63	14	detected	detect	VERB
cord-002994-1zjrunzc	63	15	by	by	ADP
cord-002994-1zjrunzc	63	16	four	four	NUM
cord-002994-1zjrunzc	63	17	or	or	CCONJ
cord-002994-1zjrunzc	63	18	more	more	ADJ
cord-002994-1zjrunzc	63	19	methods	method	NOUN
cord-002994-1zjrunzc	63	20	were	be	AUX
cord-002994-1zjrunzc	63	21	considered	consider	VERB
cord-002994-1zjrunzc	63	22	to	to	PART
cord-002994-1zjrunzc	63	23	represent	represent	VERB
cord-002994-1zjrunzc	63	24	strong	strong	ADJ
cord-002994-1zjrunzc	63	25	evidence	evidence	NOUN
cord-002994-1zjrunzc	63	26	for	for	ADP
cord-002994-1zjrunzc	63	27	recombination	recombination	NOUN
cord-002994-1zjrunzc	63	28	using	use	VERB
cord-002994-1zjrunzc	63	29	100	100	NUM
cord-002994-1zjrunzc	63	30	permutations	permutation	NOUN
cord-002994-1zjrunzc	63	31	and	and	CCONJ
cord-002994-1zjrunzc	63	32	the	the	DET
cord-002994-1zjrunzc	63	33	bonferroni	bonferroni	NOUN
cord-002994-1zjrunzc	63	34	correction	correction	NOUN
cord-002994-1zjrunzc	63	35	[	[	PUNCT
cord-002994-1zjrunzc	63	36	28	28	NUM
cord-002994-1zjrunzc	63	37	]	]	PUNCT
cord-002994-1zjrunzc	63	38	implemented	implement	VERB
cord-002994-1zjrunzc	63	39	in	in	ADP
cord-002994-1zjrunzc	63	40	the	the	DET
cord-002994-1zjrunzc	63	41	rdp4	rdp4	PROPN
cord-002994-1zjrunzc	63	42	program	program	NOUN
cord-002994-1zjrunzc	63	43	to	to	PART
cord-002994-1zjrunzc	63	44	prevent	prevent	VERB
cord-002994-1zjrunzc	63	45	false	false	ADJ
cord-002994-1zjrunzc	63	46	positive	positive	ADJ
cord-002994-1zjrunzc	63	47	results	result	NOUN
cord-002994-1zjrunzc	63	48	.	.	PUNCT
cord-002994-1zjrunzc	64	1	a	a	DET
cord-002994-1zjrunzc	64	2	chi	chi	ADJ
cord-002994-1zjrunzc	64	3	-	-	PUNCT
cord-002994-1zjrunzc	64	4	square	square	ADJ
cord-002994-1zjrunzc	64	5	test	test	NOUN
cord-002994-1zjrunzc	64	6	was	be	AUX
cord-002994-1zjrunzc	64	7	used	use	VERB
cord-002994-1zjrunzc	64	8	to	to	PART
cord-002994-1zjrunzc	64	9	determine	determine	VERB
cord-002994-1zjrunzc	64	10	if	if	SCONJ
cord-002994-1zjrunzc	64	11	the	the	DET
cord-002994-1zjrunzc	64	12	sequence	sequence	NOUN
cord-002994-1zjrunzc	64	13	identity	identity	NOUN
cord-002994-1zjrunzc	64	14	between	between	ADP
cord-002994-1zjrunzc	64	15	a	a	DET
cord-002994-1zjrunzc	64	16	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	64	17	isolate	isolate	NOUN
cord-002994-1zjrunzc	64	18	and	and	CCONJ
cord-002994-1zjrunzc	64	19	a	a	DET
cord-002994-1zjrunzc	64	20	given	give	VERB
cord-002994-1zjrunzc	64	21	parent	parent	NOUN
cord-002994-1zjrunzc	64	22	was	be	AUX
cord-002994-1zjrunzc	64	23	significantly	significantly	ADV
cord-002994-1zjrunzc	64	24	different	different	ADJ
cord-002994-1zjrunzc	64	25	both	both	CCONJ
cord-002994-1zjrunzc	64	26	inside	inside	ADP
cord-002994-1zjrunzc	64	27	and	and	CCONJ
cord-002994-1zjrunzc	64	28	outside	outside	ADP
cord-002994-1zjrunzc	64	29	the	the	DET
cord-002994-1zjrunzc	64	30	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	64	31	region	region	NOUN
cord-002994-1zjrunzc	64	32	.	.	PUNCT
cord-002994-1zjrunzc	65	1	in	in	ADP
cord-002994-1zjrunzc	65	2	addition	addition	NOUN
cord-002994-1zjrunzc	65	3	,	,	PUNCT
cord-002994-1zjrunzc	65	4	a	a	DET
cord-002994-1zjrunzc	65	5	bootscan	bootscan	ADJ
cord-002994-1zjrunzc	65	6	analysis	analysis	NOUN
cord-002994-1zjrunzc	65	7	including	include	VERB
cord-002994-1zjrunzc	65	8	the	the	DET
cord-002994-1zjrunzc	65	9	recombinant	recombinant	NOUN
cord-002994-1zjrunzc	65	10	and	and	CCONJ
cord-002994-1zjrunzc	65	11	the	the	DET
cord-002994-1zjrunzc	65	12	parental	parental	ADJ
cord-002994-1zjrunzc	65	13	strains	strain	NOUN
cord-002994-1zjrunzc	65	14	determined	determine	VERB
cord-002994-1zjrunzc	65	15	above	above	ADV
cord-002994-1zjrunzc	65	16	was	be	AUX
cord-002994-1zjrunzc	65	17	also	also	ADV
cord-002994-1zjrunzc	65	18	performed	perform	VERB
cord-002994-1zjrunzc	65	19	to	to	PART
cord-002994-1zjrunzc	65	20	confirm	confirm	VERB
cord-002994-1zjrunzc	65	21	these	these	DET
cord-002994-1zjrunzc	65	22	putative	putative	ADJ
cord-002994-1zjrunzc	65	23	recombination	recombination	NOUN
cord-002994-1zjrunzc	65	24	events	event	NOUN
cord-002994-1zjrunzc	65	25	.	.	PUNCT
cord-002994-1zjrunzc	66	1	the	the	DET
cord-002994-1zjrunzc	66	2	occurrence	occurrence	NOUN
cord-002994-1zjrunzc	66	3	of	of	ADP
cord-002994-1zjrunzc	66	4	recombination	recombination	NOUN
cord-002994-1zjrunzc	66	5	in	in	ADP
cord-002994-1zjrunzc	66	6	bagv	bagv	NOUN
cord-002994-1zjrunzc	66	7	genomes	genome	NOUN
cord-002994-1zjrunzc	66	8	was	be	AUX
cord-002994-1zjrunzc	66	9	also	also	ADV
cord-002994-1zjrunzc	66	10	investigated	investigate	VERB
cord-002994-1zjrunzc	66	11	with	with	ADP
cord-002994-1zjrunzc	66	12	a	a	DET
cord-002994-1zjrunzc	66	13	method	method	NOUN
cord-002994-1zjrunzc	66	14	called	call	VERB
cord-002994-1zjrunzc	66	15	genetic	genetic	ADJ
cord-002994-1zjrunzc	66	16	algorithms	algorithm	NOUN
cord-002994-1zjrunzc	66	17	for	for	ADP
cord-002994-1zjrunzc	66	18	recombination	recombination	NOUN
cord-002994-1zjrunzc	66	19	detection	detection	NOUN
cord-002994-1zjrunzc	66	20	(	(	PUNCT
cord-002994-1zjrunzc	66	21	gard	gard	NOUN
cord-002994-1zjrunzc	66	22	)	)	PUNCT
cord-002994-1zjrunzc	66	23	implemented	implement	VERB
cord-002994-1zjrunzc	66	24	in	in	ADP
cord-002994-1zjrunzc	66	25	datamonkey	datamonkey	PROPN
cord-002994-1zjrunzc	66	26	web	web	NOUN
cord-002994-1zjrunzc	66	27	server	server	NOUN
cord-002994-1zjrunzc	66	28	(	(	PUNCT
cord-002994-1zjrunzc	66	29	http://datamonkey.org	http://datamonkey.org	X
cord-002994-1zjrunzc	66	30	)	)	PUNCT
cord-002994-1zjrunzc	66	31	[	[	PUNCT
cord-002994-1zjrunzc	66	32	29	29	NUM
cord-002994-1zjrunzc	66	33	]	]	PUNCT
cord-002994-1zjrunzc	66	34	,	,	PUNCT
cord-002994-1zjrunzc	66	35	that	that	SCONJ
cord-002994-1zjrunzc	66	36	estimates	estimate	VERB
cord-002994-1zjrunzc	66	37	breakpoints	breakpoint	NOUN
cord-002994-1zjrunzc	66	38	based	base	VERB
cord-002994-1zjrunzc	66	39	on	on	ADP
cord-002994-1zjrunzc	66	40	a	a	DET
cord-002994-1zjrunzc	66	41	genetic	genetic	ADJ
cord-002994-1zjrunzc	66	42	algorithm	algorithm	NOUN
cord-002994-1zjrunzc	66	43	.	.	PUNCT
cord-002994-1zjrunzc	67	1	the	the	DET
cord-002994-1zjrunzc	67	2	statistical	statistical	ADJ
cord-002994-1zjrunzc	67	3	significance	significance	NOUN
cord-002994-1zjrunzc	67	4	of	of	ADP
cord-002994-1zjrunzc	67	5	putative	putative	ADJ
cord-002994-1zjrunzc	67	6	breakpoints	breakpoint	NOUN
cord-002994-1zjrunzc	67	7	was	be	AUX
cord-002994-1zjrunzc	67	8	evaluated	evaluate	VERB
cord-002994-1zjrunzc	67	9	through	through	ADP
cord-002994-1zjrunzc	67	10	kishino	kishino	PROPN
cord-002994-1zjrunzc	67	11	-	-	PUNCT
cord-002994-1zjrunzc	67	12	hasegawa	hasegawa	PROPN
cord-002994-1zjrunzc	67	13	(	(	PUNCT
cord-002994-1zjrunzc	67	14	hk	hk	PROPN
cord-002994-1zjrunzc	67	15	)	)	PUNCT
cord-002994-1zjrunzc	67	16	tests	test	NOUN
cord-002994-1zjrunzc	67	17	;	;	PUNCT
cord-002994-1zjrunzc	67	18	breakpoints	breakpoint	NOUN
cord-002994-1zjrunzc	67	19	were	be	AUX
cord-002994-1zjrunzc	67	20	considered	consider	VERB
cord-002994-1zjrunzc	67	21	significant	significant	ADJ
cord-002994-1zjrunzc	67	22	if	if	SCONJ
cord-002994-1zjrunzc	67	23	their	their	PRON
cord-002994-1zjrunzc	67	24	p	p	NOUN
cord-002994-1zjrunzc	67	25	value	value	NOUN
cord-002994-1zjrunzc	67	26	was	be	AUX
cord-002994-1zjrunzc	67	27	<	<	X
cord-002994-1zjrunzc	67	28	0.05	0.05	NUM
cord-002994-1zjrunzc	67	29	.	.	PUNCT
cord-002994-1zjrunzc	68	1	separate	separate	ADJ
cord-002994-1zjrunzc	68	2	neighbor	neighbor	NOUN
cord-002994-1zjrunzc	68	3	-	-	PUNCT
cord-002994-1zjrunzc	68	4	joining	join	VERB
cord-002994-1zjrunzc	68	5	(	(	PUNCT
cord-002994-1zjrunzc	68	6	nj	nj	PROPN
cord-002994-1zjrunzc	68	7	)	)	PUNCT
cord-002994-1zjrunzc	68	8	trees	tree	NOUN
cord-002994-1zjrunzc	68	9	were	be	AUX
cord-002994-1zjrunzc	68	10	constructed	construct	VERB
cord-002994-1zjrunzc	68	11	for	for	ADP
cord-002994-1zjrunzc	68	12	identified	identify	VERB
cord-002994-1zjrunzc	68	13	putative	putative	ADJ
cord-002994-1zjrunzc	68	14	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	68	15	region	region	NOUN
cord-002994-1zjrunzc	68	16	and	and	CCONJ
cord-002994-1zjrunzc	68	17	non	non	ADJ
cord-002994-1zjrunzc	68	18	-	-	ADJ
cord-002994-1zjrunzc	68	19	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	68	20	alignment	alignment	NOUN
cord-002994-1zjrunzc	68	21	partitions	partition	NOUN
cord-002994-1zjrunzc	68	22	dictated	dictate	VERB
cord-002994-1zjrunzc	68	23	by	by	ADP
cord-002994-1zjrunzc	68	24	the	the	DET
cord-002994-1zjrunzc	68	25	breakpoint	breakpoint	NOUN
cord-002994-1zjrunzc	68	26	locations	location	NOUN
cord-002994-1zjrunzc	68	27	.	.	PUNCT
cord-002994-1zjrunzc	69	1	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	69	2	trees	tree	NOUN
cord-002994-1zjrunzc	69	3	were	be	AUX
cord-002994-1zjrunzc	69	4	inferred	infer	VERB
cord-002994-1zjrunzc	69	5	using	use	VERB
cord-002994-1zjrunzc	69	6	the	the	DET
cord-002994-1zjrunzc	69	7	percentage	percentage	NOUN
cord-002994-1zjrunzc	69	8	of	of	ADP
cord-002994-1zjrunzc	69	9	1000	1000	NUM
cord-002994-1zjrunzc	69	10	bootstrap	bootstrap	NOUN
cord-002994-1zjrunzc	69	11	replications	replication	NOUN
cord-002994-1zjrunzc	69	12	under	under	ADP
cord-002994-1zjrunzc	69	13	the	the	DET
cord-002994-1zjrunzc	69	14	appropriate	appropriate	ADJ
cord-002994-1zjrunzc	69	15	model	model	NOUN
cord-002994-1zjrunzc	69	16	of	of	ADP
cord-002994-1zjrunzc	69	17	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	69	18	substitution	substitution	NOUN
cord-002994-1zjrunzc	69	19	.	.	PUNCT
cord-002994-1zjrunzc	70	1	recombination	recombination	NOUN
cord-002994-1zjrunzc	70	2	can	can	AUX
cord-002994-1zjrunzc	70	3	mislead	mislead	VERB
cord-002994-1zjrunzc	70	4	inference	inference	NOUN
cord-002994-1zjrunzc	70	5	of	of	ADP
cord-002994-1zjrunzc	70	6	positive	positive	ADJ
cord-002994-1zjrunzc	70	7	natural	natural	ADJ
cord-002994-1zjrunzc	70	8	selection	selection	NOUN
cord-002994-1zjrunzc	70	9	if	if	SCONJ
cord-002994-1zjrunzc	70	10	it	it	PRON
cord-002994-1zjrunzc	70	11	is	be	AUX
cord-002994-1zjrunzc	70	12	not	not	PART
cord-002994-1zjrunzc	70	13	properly	properly	ADV
cord-002994-1zjrunzc	70	14	accounted	account	VERB
cord-002994-1zjrunzc	70	15	for	for	ADP
cord-002994-1zjrunzc	70	16	.	.	PUNCT
cord-002994-1zjrunzc	71	1	if	if	SCONJ
cord-002994-1zjrunzc	71	2	recombination	recombination	NOUN
cord-002994-1zjrunzc	71	3	was	be	AUX
cord-002994-1zjrunzc	71	4	identified	identify	VERB
cord-002994-1zjrunzc	71	5	,	,	PUNCT
cord-002994-1zjrunzc	71	6	these	these	DET
cord-002994-1zjrunzc	71	7	potential	potential	ADJ
cord-002994-1zjrunzc	71	8	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	71	9	sequences	sequence	NOUN
cord-002994-1zjrunzc	71	10	were	be	AUX
cord-002994-1zjrunzc	71	11	excluded	exclude	VERB
cord-002994-1zjrunzc	71	12	from	from	ADP
cord-002994-1zjrunzc	71	13	further	further	ADJ
cord-002994-1zjrunzc	71	14	analyses	analysis	NOUN
cord-002994-1zjrunzc	71	15	to	to	PART
cord-002994-1zjrunzc	71	16	avoid	avoid	VERB
cord-002994-1zjrunzc	71	17	inferential	inferential	ADJ
cord-002994-1zjrunzc	71	18	biases	bias	NOUN
cord-002994-1zjrunzc	71	19	[	[	X
cord-002994-1zjrunzc	71	20	30	30	NUM
cord-002994-1zjrunzc	71	21	]	]	PUNCT
cord-002994-1zjrunzc	71	22	.	.	PUNCT
cord-002994-1zjrunzc	72	1	the	the	DET
cord-002994-1zjrunzc	72	2	non	non	ADJ
cord-002994-1zjrunzc	72	3	-	-	ADJ
cord-002994-1zjrunzc	72	4	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	72	5	/	/	SYM
cord-002994-1zjrunzc	72	6	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	72	7	rate	rate	NOUN
cord-002994-1zjrunzc	72	8	ratio	ratio	NOUN
cord-002994-1zjrunzc	72	9	(	(	PUNCT
cord-002994-1zjrunzc	72	10	dn	dn	NOUN
cord-002994-1zjrunzc	72	11	/	/	SYM
cord-002994-1zjrunzc	72	12	ds	ds	PROPN
cord-002994-1zjrunzc	72	13	)	)	PUNCT
cord-002994-1zjrunzc	72	14	is	be	AUX
cord-002994-1zjrunzc	72	15	a	a	DET
cord-002994-1zjrunzc	72	16	widely	widely	ADV
cord-002994-1zjrunzc	72	17	used	use	VERB
cord-002994-1zjrunzc	72	18	method	method	NOUN
cord-002994-1zjrunzc	72	19	to	to	PART
cord-002994-1zjrunzc	72	20	detect	detect	VERB
cord-002994-1zjrunzc	72	21	positive	positive	ADJ
cord-002994-1zjrunzc	72	22	selection	selection	NOUN
cord-002994-1zjrunzc	72	23	.	.	PUNCT
cord-002994-1zjrunzc	73	1	the	the	DET
cord-002994-1zjrunzc	73	2	statistical	statistical	ADJ
cord-002994-1zjrunzc	73	3	test	test	NOUN
cord-002994-1zjrunzc	73	4	dn	dn	NOUN
cord-002994-1zjrunzc	73	5	/	/	NOUN
cord-002994-1zjrunzc	73	6	ds	ds	PROPN
cord-002994-1zjrunzc	73	7	permitted	permit	VERB
cord-002994-1zjrunzc	73	8	to	to	PART
cord-002994-1zjrunzc	73	9	distinguish	distinguish	VERB
cord-002994-1zjrunzc	73	10	diversifying	diversifying	NOUN
cord-002994-1zjrunzc	73	11	or	or	CCONJ
cord-002994-1zjrunzc	73	12	positive	positive	ADJ
cord-002994-1zjrunzc	73	13	selection	selection	NOUN
cord-002994-1zjrunzc	73	14	(	(	PUNCT
cord-002994-1zjrunzc	73	15	dn	dn	NOUN
cord-002994-1zjrunzc	73	16	/	/	NOUN
cord-002994-1zjrunzc	73	17	ds	ds	PROPN
cord-002994-1zjrunzc	73	18	>	>	X
cord-002994-1zjrunzc	73	19	1	1	NUM
cord-002994-1zjrunzc	73	20	)	)	PUNCT
cord-002994-1zjrunzc	73	21	from	from	ADP
cord-002994-1zjrunzc	73	22	negative	negative	ADJ
cord-002994-1zjrunzc	73	23	or	or	CCONJ
cord-002994-1zjrunzc	73	24	purifying	purifying	NOUN
cord-002994-1zjrunzc	73	25	selection	selection	NOUN
cord-002994-1zjrunzc	73	26	(	(	PUNCT
cord-002994-1zjrunzc	73	27	dn	dn	NOUN
cord-002994-1zjrunzc	73	28	/	/	NOUN
cord-002994-1zjrunzc	73	29	ds	ds	NOUN
cord-002994-1zjrunzc	73	30	<	<	X
cord-002994-1zjrunzc	73	31	1	1	NUM
cord-002994-1zjrunzc	73	32	)	)	PUNCT
cord-002994-1zjrunzc	73	33	.	.	PUNCT
cord-002994-1zjrunzc	74	1	positive	positive	ADJ
cord-002994-1zjrunzc	74	2	selection	selection	NOUN
cord-002994-1zjrunzc	74	3	is	be	AUX
cord-002994-1zjrunzc	74	4	inferred	infer	VERB
cord-002994-1zjrunzc	74	5	when	when	SCONJ
cord-002994-1zjrunzc	74	6	the	the	DET
cord-002994-1zjrunzc	74	7	rate	rate	NOUN
cord-002994-1zjrunzc	74	8	of	of	ADP
cord-002994-1zjrunzc	74	9	non	non	ADJ
cord-002994-1zjrunzc	74	10	-	-	ADJ
cord-002994-1zjrunzc	74	11	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	74	12	(	(	PUNCT
cord-002994-1zjrunzc	74	13	dn	dn	NOUN
cord-002994-1zjrunzc	74	14	)	)	PUNCT
cord-002994-1zjrunzc	74	15	substitutions	substitution	NOUN
cord-002994-1zjrunzc	74	16	is	be	AUX
cord-002994-1zjrunzc	74	17	higher	high	ADJ
cord-002994-1zjrunzc	74	18	than	than	ADP
cord-002994-1zjrunzc	74	19	that	that	PRON
cord-002994-1zjrunzc	74	20	of	of	ADP
cord-002994-1zjrunzc	74	21	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	74	22	(	(	PUNCT
cord-002994-1zjrunzc	74	23	ds	ds	NOUN
cord-002994-1zjrunzc	74	24	)	)	PUNCT
cord-002994-1zjrunzc	74	25	substitutions	substitution	NOUN
cord-002994-1zjrunzc	74	26	(	(	PUNCT
cord-002994-1zjrunzc	74	27	dn	dn	X
cord-002994-1zjrunzc	74	28	>	>	X
cord-002994-1zjrunzc	74	29	ds	ds	PROPN
cord-002994-1zjrunzc	74	30	)	)	PUNCT
cord-002994-1zjrunzc	74	31	.	.	PUNCT
cord-002994-1zjrunzc	75	1	episodes	episode	NOUN
cord-002994-1zjrunzc	75	2	of	of	ADP
cord-002994-1zjrunzc	75	3	positive	positive	ADJ
cord-002994-1zjrunzc	75	4	selection	selection	NOUN
cord-002994-1zjrunzc	75	5	in	in	ADP
cord-002994-1zjrunzc	75	6	each	each	DET
cord-002994-1zjrunzc	75	7	gene	gene	NOUN
cord-002994-1zjrunzc	75	8	of	of	ADP
cord-002994-1zjrunzc	75	9	bagv	bagv	PROPN
cord-002994-1zjrunzc	75	10	were	be	AUX
cord-002994-1zjrunzc	75	11	analyzed	analyze	VERB
cord-002994-1zjrunzc	75	12	using	use	VERB
cord-002994-1zjrunzc	75	13	methods	method	NOUN
cord-002994-1zjrunzc	75	14	of	of	ADP
cord-002994-1zjrunzc	75	15	estimation	estimation	NOUN
cord-002994-1zjrunzc	75	16	among	among	ADP
cord-002994-1zjrunzc	75	17	individual	individual	ADJ
cord-002994-1zjrunzc	75	18	sites	site	NOUN
cord-002994-1zjrunzc	75	19	and	and	CCONJ
cord-002994-1zjrunzc	75	20	internal	internal	ADJ
cord-002994-1zjrunzc	75	21	sites	site	NOUN
cord-002994-1zjrunzc	75	22	on	on	ADP
cord-002994-1zjrunzc	75	23	branches	branch	NOUN
cord-002994-1zjrunzc	75	24	of	of	ADP
cord-002994-1zjrunzc	75	25	the	the	DET
cord-002994-1zjrunzc	75	26	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	75	27	tree	tree	NOUN
cord-002994-1zjrunzc	75	28	.	.	PUNCT
cord-002994-1zjrunzc	76	1	for	for	ADP
cord-002994-1zjrunzc	76	2	this	this	PRON
cord-002994-1zjrunzc	76	3	,	,	PUNCT
cord-002994-1zjrunzc	76	4	a	a	DET
cord-002994-1zjrunzc	76	5	total	total	NOUN
cord-002994-1zjrunzc	76	6	of	of	ADP
cord-002994-1zjrunzc	76	7	9	9	NUM
cord-002994-1zjrunzc	76	8	alignment	alignment	NOUN
cord-002994-1zjrunzc	76	9	partitions	partition	NOUN
cord-002994-1zjrunzc	76	10	were	be	AUX
cord-002994-1zjrunzc	76	11	performed	perform	VERB
cord-002994-1zjrunzc	76	12	corresponding	correspond	VERB
cord-002994-1zjrunzc	76	13	to	to	ADP
cord-002994-1zjrunzc	76	14	c	c	PROPN
cord-002994-1zjrunzc	76	15	,	,	PUNCT
cord-002994-1zjrunzc	76	16	prm	prm	PROPN
cord-002994-1zjrunzc	76	17	,	,	PUNCT
cord-002994-1zjrunzc	76	18	e	e	PROPN
cord-002994-1zjrunzc	76	19	,	,	PUNCT
cord-002994-1zjrunzc	76	20	ns1	ns1	PROPN
cord-002994-1zjrunzc	76	21	,	,	PUNCT
cord-002994-1zjrunzc	76	22	ns2a	ns2a	NOUN
cord-002994-1zjrunzc	76	23	,	,	PUNCT
cord-002994-1zjrunzc	76	24	ns2b	ns2b	ADJ
cord-002994-1zjrunzc	76	25	,	,	PUNCT
cord-002994-1zjrunzc	76	26	ns3	ns3	NOUN
cord-002994-1zjrunzc	76	27	,	,	PUNCT
cord-002994-1zjrunzc	76	28	ns4a	ns4a	NOUN
cord-002994-1zjrunzc	76	29	,	,	PUNCT
cord-002994-1zjrunzc	76	30	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	76	31	and	and	CCONJ
cord-002994-1zjrunzc	76	32	ns5	ns5	PROPN
cord-002994-1zjrunzc	76	33	proteins	protein	NOUN
cord-002994-1zjrunzc	76	34	.	.	PUNCT
cord-002994-1zjrunzc	77	1	as	as	ADP
cord-002994-1zjrunzc	77	2	site	site	NOUN
cord-002994-1zjrunzc	77	3	model	model	NOUN
cord-002994-1zjrunzc	77	4	,	,	PUNCT
cord-002994-1zjrunzc	77	5	we	we	PRON
cord-002994-1zjrunzc	77	6	used	use	VERB
cord-002994-1zjrunzc	77	7	the	the	DET
cord-002994-1zjrunzc	77	8	single	single	ADJ
cord-002994-1zjrunzc	77	9	-	-	PUNCT
cord-002994-1zjrunzc	77	10	likelihood	likelihood	NOUN
cord-002994-1zjrunzc	77	11	ancestor	ancestor	NOUN
cord-002994-1zjrunzc	77	12	counting	counting	NOUN
cord-002994-1zjrunzc	77	13	(	(	PUNCT
cord-002994-1zjrunzc	77	14	slac	slac	PROPN
cord-002994-1zjrunzc	77	15	)	)	PUNCT
cord-002994-1zjrunzc	77	16	that	that	PRON
cord-002994-1zjrunzc	77	17	estimated	estimate	VERB
cord-002994-1zjrunzc	77	18	the	the	DET
cord-002994-1zjrunzc	77	19	difference	difference	NOUN
cord-002994-1zjrunzc	77	20	between	between	ADP
cord-002994-1zjrunzc	77	21	non	non	ADJ
cord-002994-1zjrunzc	77	22	-	-	ADJ
cord-002994-1zjrunzc	77	23	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	77	24	(	(	PUNCT
cord-002994-1zjrunzc	77	25	dn	dn	NOUN
cord-002994-1zjrunzc	77	26	)	)	PUNCT
cord-002994-1zjrunzc	77	27	and	and	CCONJ
cord-002994-1zjrunzc	77	28	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	77	29	(	(	PUNCT
cord-002994-1zjrunzc	77	30	ds	ds	ADJ
cord-002994-1zjrunzc	77	31	)	)	PUNCT
cord-002994-1zjrunzc	77	32	rates	rate	NOUN
cord-002994-1zjrunzc	77	33	per	per	ADP
cord-002994-1zjrunzc	77	34	codon	codon	NOUN
cord-002994-1zjrunzc	77	35	site	site	NOUN
cord-002994-1zjrunzc	77	36	at	at	ADP
cord-002994-1zjrunzc	77	37	0.1	0.1	NUM
cord-002994-1zjrunzc	77	38	significance	significance	NOUN
cord-002994-1zjrunzc	77	39	level	level	NOUN
cord-002994-1zjrunzc	77	40	.	.	PUNCT
cord-002994-1zjrunzc	78	1	the	the	DET
cord-002994-1zjrunzc	78	2	fast	fast	ADV
cord-002994-1zjrunzc	78	3	unconstrained	unconstrained	ADJ
cord-002994-1zjrunzc	78	4	bayesian	bayesian	NOUN
cord-002994-1zjrunzc	78	5	approximation	approximation	NOUN
cord-002994-1zjrunzc	78	6	(	(	PUNCT
cord-002994-1zjrunzc	78	7	fubar	fubar	NOUN
cord-002994-1zjrunzc	78	8	)	)	PUNCT
cord-002994-1zjrunzc	78	9	method	method	NOUN
cord-002994-1zjrunzc	78	10	which	which	PRON
cord-002994-1zjrunzc	78	11	evaluated	evaluate	VERB
cord-002994-1zjrunzc	78	12	episodic	episodic	ADJ
cord-002994-1zjrunzc	78	13	positive	positive	ADJ
cord-002994-1zjrunzc	78	14	selection	selection	NOUN
cord-002994-1zjrunzc	78	15	at	at	ADP
cord-002994-1zjrunzc	78	16	each	each	DET
cord-002994-1zjrunzc	78	17	site	site	NOUN
cord-002994-1zjrunzc	78	18	in	in	ADP
cord-002994-1zjrunzc	78	19	the	the	DET
cord-002994-1zjrunzc	78	20	alignment	alignment	NOUN
cord-002994-1zjrunzc	78	21	at	at	ADP
cord-002994-1zjrunzc	78	22	posterior	posterior	ADJ
cord-002994-1zjrunzc	78	23	probability	probability	NOUN
cord-002994-1zjrunzc	78	24	≥0.9	≥0.9	PROPN
cord-002994-1zjrunzc	78	25	was	be	AUX
cord-002994-1zjrunzc	78	26	also	also	ADV
cord-002994-1zjrunzc	78	27	used	use	VERB
cord-002994-1zjrunzc	78	28	[	[	SYM
cord-002994-1zjrunzc	78	29	31	31	NUM
cord-002994-1zjrunzc	78	30	]	]	PUNCT
cord-002994-1zjrunzc	78	31	.	.	PUNCT
cord-002994-1zjrunzc	79	1	the	the	DET
cord-002994-1zjrunzc	79	2	mixed	mixed	ADJ
cord-002994-1zjrunzc	79	3	effects	effect	NOUN
cord-002994-1zjrunzc	79	4	model	model	NOUN
cord-002994-1zjrunzc	79	5	of	of	ADP
cord-002994-1zjrunzc	79	6	evolution	evolution	NOUN
cord-002994-1zjrunzc	79	7	(	(	PUNCT
cord-002994-1zjrunzc	79	8	meme	meme	NOUN
cord-002994-1zjrunzc	79	9	)	)	PUNCT
cord-002994-1zjrunzc	79	10	was	be	AUX
cord-002994-1zjrunzc	79	11	also	also	ADV
cord-002994-1zjrunzc	79	12	conducted	conduct	VERB
cord-002994-1zjrunzc	79	13	at	at	ADP
cord-002994-1zjrunzc	79	14	a	a	DET
cord-002994-1zjrunzc	79	15	0.1	0.1	NUM
cord-002994-1zjrunzc	79	16	significance	significance	NOUN
cord-002994-1zjrunzc	79	17	level	level	NOUN
cord-002994-1zjrunzc	79	18	for	for	ADP
cord-002994-1zjrunzc	79	19	estimation	estimation	NOUN
cord-002994-1zjrunzc	79	20	selective	selective	ADJ
cord-002994-1zjrunzc	79	21	pressure	pressure	NOUN
cord-002994-1zjrunzc	79	22	changes	change	NOUN
cord-002994-1zjrunzc	79	23	among	among	ADP
cord-002994-1zjrunzc	79	24	codon	codon	NOUN
cord-002994-1zjrunzc	79	25	sites	site	NOUN
cord-002994-1zjrunzc	79	26	.	.	PUNCT
cord-002994-1zjrunzc	80	1	finally	finally	ADV
cord-002994-1zjrunzc	80	2	,	,	PUNCT
cord-002994-1zjrunzc	80	3	branch	branch	NOUN
cord-002994-1zjrunzc	80	4	-	-	PUNCT
cord-002994-1zjrunzc	80	5	site	site	NOUN
cord-002994-1zjrunzc	80	6	random	random	ADJ
cord-002994-1zjrunzc	80	7	effects	effect	NOUN
cord-002994-1zjrunzc	80	8	likelihood	likelihood	NOUN
cord-002994-1zjrunzc	80	9	(	(	PUNCT
cord-002994-1zjrunzc	80	10	branch	branch	NOUN
cord-002994-1zjrunzc	80	11	-	-	PUNCT
cord-002994-1zjrunzc	80	12	site	site	NOUN
cord-002994-1zjrunzc	80	13	rel	rel	NOUN
cord-002994-1zjrunzc	80	14	)	)	PUNCT
cord-002994-1zjrunzc	80	15	analysis	analysis	NOUN
cord-002994-1zjrunzc	80	16	was	be	AUX
cord-002994-1zjrunzc	80	17	used	use	VERB
cord-002994-1zjrunzc	80	18	to	to	PART
cord-002994-1zjrunzc	80	19	evaluate	evaluate	VERB
cord-002994-1zjrunzc	80	20	evidence	evidence	NOUN
cord-002994-1zjrunzc	80	21	of	of	ADP
cord-002994-1zjrunzc	80	22	diversifying	diversify	VERB
cord-002994-1zjrunzc	80	23	selection	selection	NOUN
cord-002994-1zjrunzc	80	24	on	on	ADP
cord-002994-1zjrunzc	80	25	specific	specific	ADJ
cord-002994-1zjrunzc	80	26	branches	branch	NOUN
cord-002994-1zjrunzc	80	27	in	in	ADP
cord-002994-1zjrunzc	80	28	the	the	DET
cord-002994-1zjrunzc	80	29	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	80	30	tree	tree	NOUN
cord-002994-1zjrunzc	80	31	at	at	ADP
cord-002994-1zjrunzc	80	32	a	a	DET
cord-002994-1zjrunzc	80	33	proportion	proportion	NOUN
cord-002994-1zjrunzc	80	34	of	of	ADP
cord-002994-1zjrunzc	80	35	sites	site	NOUN
cord-002994-1zjrunzc	80	36	,	,	PUNCT
cord-002994-1zjrunzc	80	37	considering	consider	VERB
cord-002994-1zjrunzc	80	38	p	p	NOUN
cord-002994-1zjrunzc	80	39	-	-	NOUN
cord-002994-1zjrunzc	80	40	values	value	NOUN
cord-002994-1zjrunzc	80	41	less	less	ADJ
cord-002994-1zjrunzc	80	42	than	than	ADP
cord-002994-1zjrunzc	80	43	0.05	0.05	NUM
cord-002994-1zjrunzc	80	44	as	as	ADP
cord-002994-1zjrunzc	80	45	significant	significant	ADJ
cord-002994-1zjrunzc	80	46	.	.	PUNCT
cord-002994-1zjrunzc	81	1	all	all	DET
cord-002994-1zjrunzc	81	2	four	four	NUM
cord-002994-1zjrunzc	81	3	methods	method	NOUN
cord-002994-1zjrunzc	81	4	were	be	AUX
cord-002994-1zjrunzc	81	5	conducted	conduct	VERB
cord-002994-1zjrunzc	81	6	with	with	ADP
cord-002994-1zjrunzc	81	7	hyphy	hyphy	NOUN
cord-002994-1zjrunzc	81	8	package	package	NOUN
cord-002994-1zjrunzc	81	9	implemented	implement	VERB
cord-002994-1zjrunzc	81	10	in	in	ADP
cord-002994-1zjrunzc	81	11	datamonkey	datamonkey	NOUN
cord-002994-1zjrunzc	81	12	web	web	NOUN
cord-002994-1zjrunzc	81	13	server	server	NOUN
cord-002994-1zjrunzc	81	14	[	[	PUNCT
cord-002994-1zjrunzc	81	15	29	29	NUM
cord-002994-1zjrunzc	81	16	]	]	PUNCT
cord-002994-1zjrunzc	81	17	.	.	PUNCT
cord-002994-1zjrunzc	82	1	an	an	DET
cord-002994-1zjrunzc	82	2	episode	episode	NOUN
cord-002994-1zjrunzc	82	3	of	of	ADP
cord-002994-1zjrunzc	82	4	positive	positive	ADJ
cord-002994-1zjrunzc	82	5	diversifying	diversify	VERB
cord-002994-1zjrunzc	82	6	selection	selection	NOUN
cord-002994-1zjrunzc	82	7	in	in	ADP
cord-002994-1zjrunzc	82	8	concern	concern	NOUN
cord-002994-1zjrunzc	82	9	of	of	ADP
cord-002994-1zjrunzc	82	10	a	a	DET
cord-002994-1zjrunzc	82	11	region	region	NOUN
cord-002994-1zjrunzc	82	12	was	be	AUX
cord-002994-1zjrunzc	82	13	considered	consider	VERB
cord-002994-1zjrunzc	82	14	if	if	SCONJ
cord-002994-1zjrunzc	82	15	it	it	PRON
cord-002994-1zjrunzc	82	16	was	be	AUX
cord-002994-1zjrunzc	82	17	detected	detect	VERB
cord-002994-1zjrunzc	82	18	by	by	ADP
cord-002994-1zjrunzc	82	19	at	at	ADV
cord-002994-1zjrunzc	82	20	least	least	ADV
cord-002994-1zjrunzc	82	21	two	two	NUM
cord-002994-1zjrunzc	82	22	different	different	ADJ
cord-002994-1zjrunzc	82	23	methods	method	NOUN
cord-002994-1zjrunzc	82	24	.	.	PUNCT
cord-002994-1zjrunzc	83	1	the	the	DET
cord-002994-1zjrunzc	83	2	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	83	3	analysis	analysis	NOUN
cord-002994-1zjrunzc	83	4	was	be	AUX
cord-002994-1zjrunzc	83	5	performed	perform	VERB
cord-002994-1zjrunzc	83	6	using	use	VERB
cord-002994-1zjrunzc	83	7	a	a	DET
cord-002994-1zjrunzc	83	8	strict	strict	ADJ
cord-002994-1zjrunzc	83	9	clock	clock	NOUN
cord-002994-1zjrunzc	83	10	gmrf	gmrf	PROPN
cord-002994-1zjrunzc	83	11	bayesian	bayesian	PROPN
cord-002994-1zjrunzc	83	12	skyride	skyride	PROPN
cord-002994-1zjrunzc	83	13	coalescent	coalescent	PROPN
cord-002994-1zjrunzc	83	14	tree	tree	NOUN
cord-002994-1zjrunzc	83	15	prior	prior	ADV
cord-002994-1zjrunzc	83	16	[	[	X
cord-002994-1zjrunzc	83	17	32	32	NUM
cord-002994-1zjrunzc	83	18	,	,	PUNCT
cord-002994-1zjrunzc	83	19	33	33	NUM
cord-002994-1zjrunzc	83	20	]	]	PUNCT
cord-002994-1zjrunzc	83	21	.	.	PUNCT
cord-002994-1zjrunzc	84	1	the	the	DET
cord-002994-1zjrunzc	84	2	gtr	gtr	NOUN
cord-002994-1zjrunzc	84	3	substitution	substitution	NOUN
cord-002994-1zjrunzc	84	4	model	model	NOUN
cord-002994-1zjrunzc	84	5	was	be	AUX
cord-002994-1zjrunzc	84	6	used	use	VERB
cord-002994-1zjrunzc	84	7	with	with	ADP
cord-002994-1zjrunzc	84	8	4	4	NUM
cord-002994-1zjrunzc	84	9	gamma	gamma	NOUN
cord-002994-1zjrunzc	84	10	rate	rate	NOUN
cord-002994-1zjrunzc	84	11	categories	category	NOUN
cord-002994-1zjrunzc	84	12	.	.	PUNCT
cord-002994-1zjrunzc	85	1	the	the	DET
cord-002994-1zjrunzc	85	2	bayesian	bayesian	PROPN
cord-002994-1zjrunzc	85	3	markov	markov	PROPN
cord-002994-1zjrunzc	85	4	chain	chain	PROPN
cord-002994-1zjrunzc	85	5	monte	monte	PROPN
cord-002994-1zjrunzc	85	6	carlo	carlo	PROPN
cord-002994-1zjrunzc	85	7	(	(	PUNCT
cord-002994-1zjrunzc	85	8	mcmc	mcmc	PROPN
cord-002994-1zjrunzc	85	9	)	)	PUNCT
cord-002994-1zjrunzc	85	10	algorithms	algorithm	NOUN
cord-002994-1zjrunzc	85	11	using	use	VERB
cord-002994-1zjrunzc	85	12	beast	beast	NOUN
cord-002994-1zjrunzc	85	13	v1.8.4	v1.8.4	X
cord-002994-1zjrunzc	85	14	(	(	PUNCT
cord-002994-1zjrunzc	85	15	http://beast.community/	http://beast.community/	PROPN
cord-002994-1zjrunzc	85	16	)	)	PUNCT
cord-002994-1zjrunzc	86	1	[	[	PUNCT
cord-002994-1zjrunzc	86	2	34	34	NUM
cord-002994-1zjrunzc	86	3	]	]	PUNCT
cord-002994-1zjrunzc	86	4	were	be	AUX
cord-002994-1zjrunzc	86	5	employed	employ	VERB
cord-002994-1zjrunzc	86	6	to	to	PART
cord-002994-1zjrunzc	86	7	estimate	estimate	VERB
cord-002994-1zjrunzc	86	8	the	the	DET
cord-002994-1zjrunzc	86	9	rate	rate	NOUN
cord-002994-1zjrunzc	86	10	of	of	ADP
cord-002994-1zjrunzc	86	11	bagv	bagv	PROPN
cord-002994-1zjrunzc	86	12	evolution	evolution	PROPN
cord-002994-1zjrunzc	86	13	from	from	ADP
cord-002994-1zjrunzc	86	14	first	first	ADJ
cord-002994-1zjrunzc	86	15	isolation	isolation	NOUN
cord-002994-1zjrunzc	86	16	to	to	ADP
cord-002994-1zjrunzc	86	17	2014	2014	NUM
cord-002994-1zjrunzc	86	18	.	.	PUNCT
cord-002994-1zjrunzc	87	1	mcmc	mcmc	NOUN
cord-002994-1zjrunzc	87	2	analyses	analysis	NOUN
cord-002994-1zjrunzc	87	3	were	be	AUX
cord-002994-1zjrunzc	87	4	run	run	VERB
cord-002994-1zjrunzc	87	5	for	for	ADP
cord-002994-1zjrunzc	87	6	100	100	NUM
cord-002994-1zjrunzc	87	7	million	million	NUM
cord-002994-1zjrunzc	87	8	generations	generation	NOUN
cord-002994-1zjrunzc	87	9	,	,	PUNCT
cord-002994-1zjrunzc	87	10	sampling	sample	VERB
cord-002994-1zjrunzc	87	11	every	every	DET
cord-002994-1zjrunzc	87	12	100	100	NUM
cord-002994-1zjrunzc	87	13	thousand	thousand	NUM
cord-002994-1zjrunzc	87	14	to	to	PART
cord-002994-1zjrunzc	87	15	ensure	ensure	VERB
cord-002994-1zjrunzc	87	16	convergence	convergence	NOUN
cord-002994-1zjrunzc	87	17	of	of	ADP
cord-002994-1zjrunzc	87	18	estimates	estimate	NOUN
cord-002994-1zjrunzc	87	19	.	.	PUNCT
cord-002994-1zjrunzc	88	1	population	population	NOUN
cord-002994-1zjrunzc	88	2	size	size	NOUN
cord-002994-1zjrunzc	88	3	(	(	PUNCT
cord-002994-1zjrunzc	88	4	ess	ess	PROPN
cord-002994-1zjrunzc	88	5	)	)	PUNCT
cord-002994-1zjrunzc	88	6	above	above	ADP
cord-002994-1zjrunzc	88	7	200	200	NUM
cord-002994-1zjrunzc	88	8	was	be	AUX
cord-002994-1zjrunzc	88	9	assessed	assess	VERB
cord-002994-1zjrunzc	88	10	using	use	VERB
cord-002994-1zjrunzc	88	11	the	the	DET
cord-002994-1zjrunzc	88	12	analysis	analysis	NOUN
cord-002994-1zjrunzc	88	13	program	program	NOUN
cord-002994-1zjrunzc	88	14	tracer	tracer	NOUN
cord-002994-1zjrunzc	88	15	v1.6	v1.6	PROPN
cord-002994-1zjrunzc	88	16	(	(	PUNCT
cord-002994-1zjrunzc	88	17	http://beast.bio.ed.ac.uk/tracer	http://beast.bio.ed.ac.uk/tracer	NOUN
cord-002994-1zjrunzc	88	18	)	)	PUNCT
cord-002994-1zjrunzc	88	19	.	.	PUNCT
cord-002994-1zjrunzc	89	1	the	the	DET
cord-002994-1zjrunzc	89	2	posterior	posterior	ADJ
cord-002994-1zjrunzc	89	3	distribution	distribution	NOUN
cord-002994-1zjrunzc	89	4	of	of	ADP
cord-002994-1zjrunzc	89	5	trees	tree	NOUN
cord-002994-1zjrunzc	89	6	obtained	obtain	VERB
cord-002994-1zjrunzc	89	7	from	from	ADP
cord-002994-1zjrunzc	89	8	the	the	DET
cord-002994-1zjrunzc	89	9	beast	beast	NOUN
cord-002994-1zjrunzc	89	10	analysis	analysis	NOUN
cord-002994-1zjrunzc	89	11	was	be	AUX
cord-002994-1zjrunzc	89	12	also	also	ADV
cord-002994-1zjrunzc	89	13	used	use	VERB
cord-002994-1zjrunzc	89	14	to	to	PART
cord-002994-1zjrunzc	89	15	obtain	obtain	VERB
cord-002994-1zjrunzc	89	16	the	the	DET
cord-002994-1zjrunzc	89	17	bayesian	bayesian	PROPN
cord-002994-1zjrunzc	89	18	maximum	maximum	NOUN
cord-002994-1zjrunzc	89	19	clade	clade	NOUN
cord-002994-1zjrunzc	89	20	credibility	credibility	NOUN
cord-002994-1zjrunzc	89	21	(	(	PUNCT
cord-002994-1zjrunzc	89	22	mcc	mcc	NOUN
cord-002994-1zjrunzc	89	23	)	)	PUNCT
cord-002994-1zjrunzc	89	24	tree	tree	NOUN
cord-002994-1zjrunzc	89	25	for	for	ADP
cord-002994-1zjrunzc	89	26	these	these	DET
cord-002994-1zjrunzc	89	27	sequences	sequence	NOUN
cord-002994-1zjrunzc	89	28	generated	generate	VERB
cord-002994-1zjrunzc	89	29	by	by	ADP
cord-002994-1zjrunzc	89	30	treeannotator	treeannotator	PROPN
cord-002994-1zjrunzc	89	31	v.2.3.2	v.2.3.2	PROPN
cord-002994-1zjrunzc	89	32	(	(	PUNCT
cord-002994-1zjrunzc	89	33	http://beast.community/treeannotator	http://beast.community/treeannotator	PROPN
cord-002994-1zjrunzc	89	34	)	)	PUNCT
cord-002994-1zjrunzc	89	35	(	(	PUNCT
cord-002994-1zjrunzc	89	36	from	from	ADP
cord-002994-1zjrunzc	89	37	100	100	NUM
cord-002994-1zjrunzc	89	38	million	million	NUM
cord-002994-1zjrunzc	89	39	)	)	PUNCT
cord-002994-1zjrunzc	89	40	after	after	ADP
cord-002994-1zjrunzc	89	41	removing	remove	VERB
cord-002994-1zjrunzc	89	42	10	10	NUM
cord-002994-1zjrunzc	89	43	%	%	NOUN
cord-002994-1zjrunzc	89	44	of	of	ADP
cord-002994-1zjrunzc	89	45	the	the	DET
cord-002994-1zjrunzc	89	46	runs	run	NOUN
cord-002994-1zjrunzc	89	47	burn	burn	VERB
cord-002994-1zjrunzc	89	48	-	-	PUNCT
cord-002994-1zjrunzc	89	49	in	in	NOUN
cord-002994-1zjrunzc	89	50	and	and	CCONJ
cord-002994-1zjrunzc	89	51	visualized	visualize	VERB
cord-002994-1zjrunzc	89	52	by	by	ADP
cord-002994-1zjrunzc	89	53	figtree	figtree	ADJ
cord-002994-1zjrunzc	89	54	v.1.4.2	v.1.4.2	NOUN
cord-002994-1zjrunzc	89	55	.	.	PUNCT
cord-002994-1zjrunzc	90	1	the	the	DET
cord-002994-1zjrunzc	90	2	codon	codon	PROPN
cord-002994-1zjrunzc	90	3	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	90	4	index	index	NOUN
cord-002994-1zjrunzc	90	5	(	(	PUNCT
cord-002994-1zjrunzc	90	6	cai	cai	X
cord-002994-1zjrunzc	90	7	)	)	PUNCT
cord-002994-1zjrunzc	90	8	is	be	AUX
cord-002994-1zjrunzc	90	9	a	a	DET
cord-002994-1zjrunzc	90	10	measure	measure	NOUN
cord-002994-1zjrunzc	90	11	of	of	ADP
cord-002994-1zjrunzc	90	12	the	the	DET
cord-002994-1zjrunzc	90	13	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	90	14	codon	codon	NOUN
cord-002994-1zjrunzc	90	15	usage	usage	NOUN
cord-002994-1zjrunzc	90	16	bias	bias	NOUN
cord-002994-1zjrunzc	90	17	making	make	VERB
cord-002994-1zjrunzc	90	18	comparisons	comparison	NOUN
cord-002994-1zjrunzc	90	19	of	of	ADP
cord-002994-1zjrunzc	90	20	codon	codon	NOUN
cord-002994-1zjrunzc	90	21	usage	usage	NOUN
cord-002994-1zjrunzc	90	22	preferences	preference	NOUN
cord-002994-1zjrunzc	90	23	in	in	ADP
cord-002994-1zjrunzc	90	24	different	different	ADJ
cord-002994-1zjrunzc	90	25	organisms	organism	NOUN
cord-002994-1zjrunzc	90	26	and	and	CCONJ
cord-002994-1zjrunzc	90	27	assessing	assess	VERB
cord-002994-1zjrunzc	90	28	the	the	DET
cord-002994-1zjrunzc	90	29	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	90	30	of	of	ADP
cord-002994-1zjrunzc	90	31	viral	viral	ADJ
cord-002994-1zjrunzc	90	32	genes	gene	NOUN
cord-002994-1zjrunzc	90	33	to	to	ADP
cord-002994-1zjrunzc	90	34	their	their	PRON
cord-002994-1zjrunzc	90	35	hosts	host	NOUN
cord-002994-1zjrunzc	90	36	[	[	X
cord-002994-1zjrunzc	90	37	35	35	NUM
cord-002994-1zjrunzc	90	38	,	,	PUNCT
cord-002994-1zjrunzc	90	39	36	36	NUM
cord-002994-1zjrunzc	90	40	]	]	PUNCT
cord-002994-1zjrunzc	90	41	.	.	PUNCT
cord-002994-1zjrunzc	91	1	cai	cai	PROPN
cord-002994-1zjrunzc	91	2	was	be	AUX
cord-002994-1zjrunzc	91	3	applied	apply	VERB
cord-002994-1zjrunzc	91	4	in	in	ADP
cord-002994-1zjrunzc	91	5	many	many	ADJ
cord-002994-1zjrunzc	91	6	recent	recent	ADJ
cord-002994-1zjrunzc	91	7	studies	study	NOUN
cord-002994-1zjrunzc	91	8	involving	involve	VERB
cord-002994-1zjrunzc	91	9	humans	human	NOUN
cord-002994-1zjrunzc	91	10	and	and	CCONJ
cord-002994-1zjrunzc	91	11	rna	rna	NOUN
cord-002994-1zjrunzc	91	12	viruses	virus	NOUN
cord-002994-1zjrunzc	91	13	[	[	X
cord-002994-1zjrunzc	91	14	37	37	NUM
cord-002994-1zjrunzc	91	15	]	]	PUNCT
cord-002994-1zjrunzc	92	1	[	[	X
cord-002994-1zjrunzc	92	2	38	38	NUM
cord-002994-1zjrunzc	92	3	]	]	PUNCT
cord-002994-1zjrunzc	92	4	[	[	X
cord-002994-1zjrunzc	92	5	39	39	NUM
cord-002994-1zjrunzc	92	6	]	]	PUNCT
cord-002994-1zjrunzc	92	7	.	.	PUNCT
cord-002994-1zjrunzc	93	1	to	to	PART
cord-002994-1zjrunzc	93	2	know	know	VERB
cord-002994-1zjrunzc	93	3	if	if	SCONJ
cord-002994-1zjrunzc	93	4	there	there	PRON
cord-002994-1zjrunzc	93	5	is	be	VERB
cord-002994-1zjrunzc	93	6	evidence	evidence	NOUN
cord-002994-1zjrunzc	93	7	of	of	ADP
cord-002994-1zjrunzc	93	8	bagv	bagv	PROPN
cord-002994-1zjrunzc	93	9	adaptation	adaptation	PROPN
cord-002994-1zjrunzc	93	10	for	for	ADP
cord-002994-1zjrunzc	93	11	codon	codon	NOUN
cord-002994-1zjrunzc	93	12	usage	usage	NOUN
cord-002994-1zjrunzc	93	13	in	in	ADP
cord-002994-1zjrunzc	93	14	humans	human	NOUN
cord-002994-1zjrunzc	93	15	,	,	PUNCT
cord-002994-1zjrunzc	93	16	the	the	DET
cord-002994-1zjrunzc	93	17	cai	cai	NOUN
cord-002994-1zjrunzc	93	18	was	be	AUX
cord-002994-1zjrunzc	93	19	calculated	calculate	VERB
cord-002994-1zjrunzc	93	20	for	for	ADP
cord-002994-1zjrunzc	93	21	each	each	DET
cord-002994-1zjrunzc	93	22	isolate	isolate	NOUN
cord-002994-1zjrunzc	93	23	.	.	PUNCT
cord-002994-1zjrunzc	94	1	to	to	PART
cord-002994-1zjrunzc	94	2	calculate	calculate	VERB
cord-002994-1zjrunzc	94	3	normalized	normalize	VERB
cord-002994-1zjrunzc	94	4	cai	cai	PROPN
cord-002994-1zjrunzc	94	5	,	,	PUNCT
cord-002994-1zjrunzc	94	6	full	full	ADJ
cord-002994-1zjrunzc	94	7	-	-	PUNCT
cord-002994-1zjrunzc	94	8	length	length	NOUN
cord-002994-1zjrunzc	94	9	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	94	10	sequences	sequence	NOUN
cord-002994-1zjrunzc	94	11	of	of	ADP
cord-002994-1zjrunzc	94	12	west	west	PROPN
cord-002994-1zjrunzc	94	13	african	african	ADJ
cord-002994-1zjrunzc	94	14	bagv	bagv	PROPN
cord-002994-1zjrunzc	94	15	isolates	isolate	VERB
cord-002994-1zjrunzc	94	16	and	and	CCONJ
cord-002994-1zjrunzc	94	17	previously	previously	ADV
cord-002994-1zjrunzc	94	18	available	available	ADJ
cord-002994-1zjrunzc	94	19	bagv	bagv	NOUN
cord-002994-1zjrunzc	94	20	sequences	sequence	NOUN
cord-002994-1zjrunzc	94	21	from	from	ADP
cord-002994-1zjrunzc	94	22	spain	spain	PROPN
cord-002994-1zjrunzc	94	23	were	be	AUX
cord-002994-1zjrunzc	94	24	compared	compare	VERB
cord-002994-1zjrunzc	94	25	to	to	ADP
cord-002994-1zjrunzc	94	26	that	that	PRON
cord-002994-1zjrunzc	94	27	of	of	ADP
cord-002994-1zjrunzc	94	28	human	human	NOUN
cord-002994-1zjrunzc	94	29	using	use	VERB
cord-002994-1zjrunzc	94	30	caical	caical	ADJ
cord-002994-1zjrunzc	94	31	v1.4	v1.4	PROPN
cord-002994-1zjrunzc	94	32	program	program	NOUN
cord-002994-1zjrunzc	94	33	(	(	PUNCT
cord-002994-1zjrunzc	94	34	http://genomes.urv.es/caical/	http://genomes.urv.es/caical/	X
cord-002994-1zjrunzc	94	35	)	)	PUNCT
cord-002994-1zjrunzc	95	1	[	[	PUNCT
cord-002994-1zjrunzc	95	2	40	40	NUM
cord-002994-1zjrunzc	95	3	]	]	PUNCT
cord-002994-1zjrunzc	95	4	.	.	PUNCT
cord-002994-1zjrunzc	96	1	first	first	ADV
cord-002994-1zjrunzc	96	2	,	,	PUNCT
cord-002994-1zjrunzc	96	3	we	we	PRON
cord-002994-1zjrunzc	96	4	obtained	obtain	VERB
cord-002994-1zjrunzc	96	5	a	a	DET
cord-002994-1zjrunzc	96	6	"	"	PUNCT
cord-002994-1zjrunzc	96	7	raw	raw	ADJ
cord-002994-1zjrunzc	96	8	"	"	PUNCT
cord-002994-1zjrunzc	96	9	cai	cai	NOUN
cord-002994-1zjrunzc	96	10	(	(	PUNCT
cord-002994-1zjrunzc	96	11	rcai	rcai	PROPN
cord-002994-1zjrunzc	96	12	)	)	PUNCT
cord-002994-1zjrunzc	96	13	and	and	CCONJ
cord-002994-1zjrunzc	96	14	then	then	ADV
cord-002994-1zjrunzc	96	15	,	,	PUNCT
cord-002994-1zjrunzc	96	16	the	the	DET
cord-002994-1zjrunzc	96	17	cai	cai	NOUN
cord-002994-1zjrunzc	96	18	was	be	AUX
cord-002994-1zjrunzc	96	19	normalized	normalize	VERB
cord-002994-1zjrunzc	96	20	by	by	ADP
cord-002994-1zjrunzc	96	21	the	the	DET
cord-002994-1zjrunzc	96	22	"	"	PUNCT
cord-002994-1zjrunzc	96	23	expected	expect	VERB
cord-002994-1zjrunzc	96	24	neutral	neutral	ADJ
cord-002994-1zjrunzc	96	25	cai	cai	NOUN
cord-002994-1zjrunzc	96	26	"	"	PUNCT
cord-002994-1zjrunzc	96	27	(	(	PUNCT
cord-002994-1zjrunzc	96	28	ecai	ecai	X
cord-002994-1zjrunzc	96	29	)	)	PUNCT
cord-002994-1zjrunzc	96	30	value	value	NOUN
cord-002994-1zjrunzc	96	31	based	base	VERB
cord-002994-1zjrunzc	96	32	on	on	ADP
cord-002994-1zjrunzc	96	33	1000	1000	NUM
cord-002994-1zjrunzc	96	34	random	random	ADJ
cord-002994-1zjrunzc	96	35	viral	viral	ADJ
cord-002994-1zjrunzc	96	36	sequences	sequence	NOUN
cord-002994-1zjrunzc	96	37	using	use	VERB
cord-002994-1zjrunzc	96	38	similar	similar	ADJ
cord-002994-1zjrunzc	96	39	length	length	NOUN
cord-002994-1zjrunzc	96	40	,	,	PUNCT
cord-002994-1zjrunzc	96	41	codon	codon	NOUN
cord-002994-1zjrunzc	96	42	composition	composition	NOUN
cord-002994-1zjrunzc	96	43	,	,	PUNCT
cord-002994-1zjrunzc	96	44	gc	gc	PROPN
cord-002994-1zjrunzc	96	45	-	-	PUNCT
cord-002994-1zjrunzc	96	46	content	content	PROPN
cord-002994-1zjrunzc	96	47	and	and	CCONJ
cord-002994-1zjrunzc	96	48	human	human	ADJ
cord-002994-1zjrunzc	96	49	amino	amino	NOUN
cord-002994-1zjrunzc	96	50	acid	acid	NOUN
cord-002994-1zjrunzc	96	51	usage	usage	NOUN
cord-002994-1zjrunzc	96	52	.	.	PUNCT
cord-002994-1zjrunzc	97	1	indeed	indeed	ADV
cord-002994-1zjrunzc	97	2	,	,	PUNCT
cord-002994-1zjrunzc	97	3	a	a	DET
cord-002994-1zjrunzc	97	4	table	table	NOUN
cord-002994-1zjrunzc	97	5	for	for	ADP
cord-002994-1zjrunzc	97	6	human	human	ADJ
cord-002994-1zjrunzc	97	7	codon	codon	NOUN
cord-002994-1zjrunzc	97	8	usage	usage	NOUN
cord-002994-1zjrunzc	97	9	containing	contain	VERB
cord-002994-1zjrunzc	97	10	the	the	DET
cord-002994-1zjrunzc	97	11	entirety	entirety	NOUN
cord-002994-1zjrunzc	97	12	of	of	ADP
cord-002994-1zjrunzc	97	13	human	human	ADJ
cord-002994-1zjrunzc	97	14	coding	code	VERB
cord-002994-1zjrunzc	97	15	genes	gene	NOUN
cord-002994-1zjrunzc	97	16	is	be	AUX
cord-002994-1zjrunzc	97	17	publicly	publicly	ADV
cord-002994-1zjrunzc	97	18	available	available	ADJ
cord-002994-1zjrunzc	97	19	[	[	X
cord-002994-1zjrunzc	97	20	41	41	NUM
cord-002994-1zjrunzc	97	21	]	]	PUNCT
cord-002994-1zjrunzc	97	22	.	.	PUNCT
cord-002994-1zjrunzc	98	1	based	base	VERB
cord-002994-1zjrunzc	98	2	on	on	ADP
cord-002994-1zjrunzc	98	3	this	this	DET
cord-002994-1zjrunzc	98	4	table	table	NOUN
cord-002994-1zjrunzc	98	5	,	,	PUNCT
cord-002994-1zjrunzc	98	6	we	we	PRON
cord-002994-1zjrunzc	98	7	created	create	VERB
cord-002994-1zjrunzc	98	8	a	a	DET
cord-002994-1zjrunzc	98	9	new	new	ADJ
cord-002994-1zjrunzc	98	10	table	table	NOUN
cord-002994-1zjrunzc	98	11	where	where	SCONJ
cord-002994-1zjrunzc	98	12	only	only	ADV
cord-002994-1zjrunzc	98	13	the	the	DET
cord-002994-1zjrunzc	98	14	3804	3804	NUM
cord-002994-1zjrunzc	98	15	identified	identify	VERB
cord-002994-1zjrunzc	98	16	human	human	ADJ
cord-002994-1zjrunzc	98	17	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	98	18	genes	gene	NOUN
cord-002994-1zjrunzc	98	19	were	be	AUX
cord-002994-1zjrunzc	98	20	considered	consider	VERB
cord-002994-1zjrunzc	98	21	[	[	X
cord-002994-1zjrunzc	98	22	42	42	NUM
cord-002994-1zjrunzc	98	23	]	]	PUNCT
cord-002994-1zjrunzc	98	24	.	.	PUNCT
cord-002994-1zjrunzc	99	1	normalized	normalize	VERB
cord-002994-1zjrunzc	99	2	cai	cai	NOUN
cord-002994-1zjrunzc	99	3	threshold	threshold	NOUN
cord-002994-1zjrunzc	99	4	was	be	AUX
cord-002994-1zjrunzc	99	5	obtained	obtain	VERB
cord-002994-1zjrunzc	99	6	by	by	ADP
cord-002994-1zjrunzc	99	7	calculating	calculate	VERB
cord-002994-1zjrunzc	99	8	rcai	rcai	PROPN
cord-002994-1zjrunzc	99	9	/	/	SYM
cord-002994-1zjrunzc	99	10	ecai	ecai	X
cord-002994-1zjrunzc	99	11	values	value	NOUN
cord-002994-1zjrunzc	99	12	and	and	CCONJ
cord-002994-1zjrunzc	99	13	a	a	DET
cord-002994-1zjrunzc	99	14	value	value	NOUN
cord-002994-1zjrunzc	99	15	above	above	ADP
cord-002994-1zjrunzc	99	16	'	'	NUM
cord-002994-1zjrunzc	99	17	1	1	NUM
cord-002994-1zjrunzc	99	18	'	'	PUNCT
cord-002994-1zjrunzc	99	19	is	be	AUX
cord-002994-1zjrunzc	99	20	higher	high	ADJ
cord-002994-1zjrunzc	99	21	than	than	ADP
cord-002994-1zjrunzc	99	22	neutral	neutral	ADJ
cord-002994-1zjrunzc	99	23	and	and	CCONJ
cord-002994-1zjrunzc	99	24	considered	consider	VERB
cord-002994-1zjrunzc	99	25	as	as	ADP
cord-002994-1zjrunzc	99	26	evidence	evidence	NOUN
cord-002994-1zjrunzc	99	27	of	of	ADP
cord-002994-1zjrunzc	99	28	codon	codon	NOUN
cord-002994-1zjrunzc	99	29	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	99	30	to	to	ADP
cord-002994-1zjrunzc	99	31	the	the	DET
cord-002994-1zjrunzc	99	32	reference	reference	NOUN
cord-002994-1zjrunzc	99	33	set	set	NOUN
cord-002994-1zjrunzc	99	34	of	of	ADP
cord-002994-1zjrunzc	99	35	codon	codon	NOUN
cord-002994-1zjrunzc	99	36	preferences	preference	NOUN
cord-002994-1zjrunzc	99	37	[	[	X
cord-002994-1zjrunzc	99	38	40	40	NUM
cord-002994-1zjrunzc	99	39	]	]	PUNCT
cord-002994-1zjrunzc	99	40	.	.	PUNCT
cord-002994-1zjrunzc	100	1	cai	cai	NOUN
cord-002994-1zjrunzc	100	2	values	value	NOUN
cord-002994-1zjrunzc	100	3	obtained	obtain	VERB
cord-002994-1zjrunzc	100	4	for	for	ADP
cord-002994-1zjrunzc	100	5	bagv	bagv	NOUN
cord-002994-1zjrunzc	100	6	were	be	AUX
cord-002994-1zjrunzc	100	7	then	then	ADV
cord-002994-1zjrunzc	100	8	compared	compare	VERB
cord-002994-1zjrunzc	100	9	to	to	ADP
cord-002994-1zjrunzc	100	10	those	those	PRON
cord-002994-1zjrunzc	100	11	of	of	ADP
cord-002994-1zjrunzc	100	12	others	other	NOUN
cord-002994-1zjrunzc	100	13	mbfvs	mbfvs	ADV
cord-002994-1zjrunzc	100	14	well	well	ADV
cord-002994-1zjrunzc	100	15	known	know	VERB
cord-002994-1zjrunzc	100	16	to	to	PART
cord-002994-1zjrunzc	100	17	infect	infect	VERB
cord-002994-1zjrunzc	100	18	humans	human	NOUN
cord-002994-1zjrunzc	100	19	such	such	ADJ
cord-002994-1zjrunzc	100	20	as	as	ADP
cord-002994-1zjrunzc	100	21	dengue	dengue	NOUN
cord-002994-1zjrunzc	100	22	virus	virus	PROPN
cord-002994-1zjrunzc	100	23	(	(	PUNCT
cord-002994-1zjrunzc	100	24	denv	denv	PROPN
cord-002994-1zjrunzc	100	25	)	)	PUNCT
cord-002994-1zjrunzc	100	26	,	,	PUNCT
cord-002994-1zjrunzc	100	27	usutu	usutu	PROPN
cord-002994-1zjrunzc	100	28	virus	virus	PROPN
cord-002994-1zjrunzc	100	29	(	(	PUNCT
cord-002994-1zjrunzc	100	30	usuv	usuv	PROPN
cord-002994-1zjrunzc	100	31	)	)	PUNCT
cord-002994-1zjrunzc	100	32	,	,	PUNCT
cord-002994-1zjrunzc	100	33	wnv	wnv	INTJ
cord-002994-1zjrunzc	100	34	,	,	PUNCT
cord-002994-1zjrunzc	100	35	zika	zika	NOUN
cord-002994-1zjrunzc	100	36	virus	virus	NOUN
cord-002994-1zjrunzc	100	37	(	(	PUNCT
cord-002994-1zjrunzc	100	38	zikv	zikv	PROPN
cord-002994-1zjrunzc	100	39	)	)	PUNCT
cord-002994-1zjrunzc	100	40	and	and	CCONJ
cord-002994-1zjrunzc	100	41	yellow	yellow	ADJ
cord-002994-1zjrunzc	100	42	fever	fever	NOUN
cord-002994-1zjrunzc	100	43	virus	virus	NOUN
cord-002994-1zjrunzc	100	44	(	(	PUNCT
cord-002994-1zjrunzc	100	45	yfv	yfv	PROPN
cord-002994-1zjrunzc	100	46	)	)	PUNCT
cord-002994-1zjrunzc	100	47	,	,	PUNCT
cord-002994-1zjrunzc	100	48	nkv	nkv	ADJ
cord-002994-1zjrunzc	100	49	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	100	50	(	(	PUNCT
cord-002994-1zjrunzc	100	51	modv	modv	NOUN
cord-002994-1zjrunzc	100	52	and	and	CCONJ
cord-002994-1zjrunzc	100	53	rbv	rbv	PROPN
cord-002994-1zjrunzc	100	54	)	)	PUNCT
cord-002994-1zjrunzc	100	55	and	and	CCONJ
cord-002994-1zjrunzc	100	56	isfs	isfs	PROPN
cord-002994-1zjrunzc	100	57	(	(	PUNCT
cord-002994-1zjrunzc	100	58	cxfv	cxfv	PROPN
cord-002994-1zjrunzc	100	59	and	and	CCONJ
cord-002994-1zjrunzc	100	60	aefv	aefv	PROPN
cord-002994-1zjrunzc	100	61	)	)	PUNCT
cord-002994-1zjrunzc	100	62	,	,	PUNCT
cord-002994-1zjrunzc	100	63	using	use	VERB
cord-002994-1zjrunzc	100	64	the	the	DET
cord-002994-1zjrunzc	100	65	non	non	ADJ
cord-002994-1zjrunzc	100	66	-	-	ADJ
cord-002994-1zjrunzc	100	67	parametric	parametric	ADJ
cord-002994-1zjrunzc	100	68	wilcoxon	wilcoxon	ADJ
cord-002994-1zjrunzc	100	69	test	test	NOUN
cord-002994-1zjrunzc	100	70	with	with	ADP
cord-002994-1zjrunzc	100	71	r	r	NOUN
cord-002994-1zjrunzc	100	72	program	program	NOUN
cord-002994-1zjrunzc	100	73	.	.	PUNCT
cord-002994-1zjrunzc	101	1	a	a	DET
cord-002994-1zjrunzc	101	2	p	p	NOUN
cord-002994-1zjrunzc	101	3	-	-	PUNCT
cord-002994-1zjrunzc	101	4	value	value	NOUN
cord-002994-1zjrunzc	101	5	less	less	ADJ
cord-002994-1zjrunzc	101	6	than	than	ADP
cord-002994-1zjrunzc	101	7	0.05	0.05	NUM
cord-002994-1zjrunzc	101	8	was	be	AUX
cord-002994-1zjrunzc	101	9	considered	consider	VERB
cord-002994-1zjrunzc	101	10	as	as	ADP
cord-002994-1zjrunzc	101	11	significant	significant	ADJ
cord-002994-1zjrunzc	101	12	.	.	PUNCT
cord-002994-1zjrunzc	102	1	sequences	sequence	NOUN
cord-002994-1zjrunzc	102	2	of	of	ADP
cord-002994-1zjrunzc	102	3	tobacco	tobacco	NOUN
cord-002994-1zjrunzc	102	4	mosaic	mosaic	NOUN
cord-002994-1zjrunzc	102	5	virus	virus	PROPN
cord-002994-1zjrunzc	102	6	(	(	PUNCT
cord-002994-1zjrunzc	102	7	tmv	tmv	PROPN
cord-002994-1zjrunzc	102	8	)	)	PUNCT
cord-002994-1zjrunzc	102	9	were	be	AUX
cord-002994-1zjrunzc	102	10	compared	compare	VERB
cord-002994-1zjrunzc	102	11	to	to	ADP
cord-002994-1zjrunzc	102	12	human	human	ADJ
cord-002994-1zjrunzc	102	13	codons	codon	NOUN
cord-002994-1zjrunzc	102	14	and	and	CCONJ
cord-002994-1zjrunzc	102	15	used	use	VERB
cord-002994-1zjrunzc	102	16	as	as	ADP
cord-002994-1zjrunzc	102	17	negative	negative	ADJ
cord-002994-1zjrunzc	102	18	control	control	NOUN
cord-002994-1zjrunzc	102	19	to	to	PART
cord-002994-1zjrunzc	102	20	provide	provide	VERB
cord-002994-1zjrunzc	102	21	an	an	DET
cord-002994-1zjrunzc	102	22	example	example	NOUN
cord-002994-1zjrunzc	102	23	that	that	PRON
cord-002994-1zjrunzc	102	24	results	result	VERB
cord-002994-1zjrunzc	102	25	for	for	ADP
cord-002994-1zjrunzc	102	26	codon	codon	NOUN
cord-002994-1zjrunzc	102	27	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	102	28	to	to	ADP
cord-002994-1zjrunzc	102	29	human	human	PROPN
cord-002994-1zjrunzc	102	30	house	house	NOUN
cord-002994-1zjrunzc	102	31	-	-	PUNCT
cord-002994-1zjrunzc	102	32	keeping	keep	VERB
cord-002994-1zjrunzc	102	33	genes	gene	NOUN
cord-002994-1zjrunzc	102	34	are	be	AUX
cord-002994-1zjrunzc	102	35	robust	robust	ADJ
cord-002994-1zjrunzc	102	36	and	and	CCONJ
cord-002994-1zjrunzc	102	37	not	not	PART
cord-002994-1zjrunzc	102	38	false	false	ADJ
cord-002994-1zjrunzc	102	39	positives	positive	NOUN
cord-002994-1zjrunzc	102	40	or	or	CCONJ
cord-002994-1zjrunzc	102	41	anomalies	anomaly	NOUN
cord-002994-1zjrunzc	102	42	.	.	PUNCT
cord-002994-1zjrunzc	103	1	as	as	SCONJ
cord-002994-1zjrunzc	103	2	there	there	PRON
cord-002994-1zjrunzc	103	3	are	be	VERB
cord-002994-1zjrunzc	103	4	no	no	DET
cord-002994-1zjrunzc	103	5	known	know	VERB
cord-002994-1zjrunzc	103	6	cases	case	NOUN
cord-002994-1zjrunzc	103	7	of	of	ADP
cord-002994-1zjrunzc	103	8	human	human	ADJ
cord-002994-1zjrunzc	103	9	infection	infection	NOUN
cord-002994-1zjrunzc	103	10	,	,	PUNCT
cord-002994-1zjrunzc	103	11	or	or	CCONJ
cord-002994-1zjrunzc	103	12	evidence	evidence	NOUN
cord-002994-1zjrunzc	103	13	of	of	ADP
cord-002994-1zjrunzc	103	14	human	human	ADJ
cord-002994-1zjrunzc	103	15	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	103	16	for	for	ADP
cord-002994-1zjrunzc	103	17	tmv	tmv	PROPN
cord-002994-1zjrunzc	103	18	,	,	PUNCT
cord-002994-1zjrunzc	103	19	we	we	PRON
cord-002994-1zjrunzc	103	20	expected	expect	VERB
cord-002994-1zjrunzc	103	21	all	all	DET
cord-002994-1zjrunzc	103	22	sequences	sequence	NOUN
cord-002994-1zjrunzc	103	23	to	to	PART
cord-002994-1zjrunzc	103	24	have	have	VERB
cord-002994-1zjrunzc	103	25	a	a	DET
cord-002994-1zjrunzc	103	26	lower	low	ADJ
cord-002994-1zjrunzc	103	27	cai	cai	NOUN
cord-002994-1zjrunzc	103	28	threshold	threshold	NOUN
cord-002994-1zjrunzc	103	29	than	than	ADP
cord-002994-1zjrunzc	103	30	the	the	DET
cord-002994-1zjrunzc	103	31	calculated	calculated	ADJ
cord-002994-1zjrunzc	103	32	cai	cai	NOUN
cord-002994-1zjrunzc	103	33	.	.	PUNCT
cord-002994-1zjrunzc	104	1	in	in	ADP
cord-002994-1zjrunzc	104	2	this	this	DET
cord-002994-1zjrunzc	104	3	study	study	NOUN
cord-002994-1zjrunzc	104	4	,	,	PUNCT
cord-002994-1zjrunzc	104	5	a	a	DET
cord-002994-1zjrunzc	104	6	total	total	NOUN
cord-002994-1zjrunzc	104	7	of	of	ADP
cord-002994-1zjrunzc	104	8	11	11	NUM
cord-002994-1zjrunzc	104	9	full	full	ADJ
cord-002994-1zjrunzc	104	10	-	-	PUNCT
cord-002994-1zjrunzc	104	11	genome	genome	NOUN
cord-002994-1zjrunzc	104	12	sequences	sequence	NOUN
cord-002994-1zjrunzc	104	13	(	(	PUNCT
cord-002994-1zjrunzc	104	14	10,954	10,954	NUM
cord-002994-1zjrunzc	104	15	bp	bp	PROPN
cord-002994-1zjrunzc	104	16	)	)	PUNCT
cord-002994-1zjrunzc	104	17	of	of	ADP
cord-002994-1zjrunzc	104	18	west	west	PROPN
cord-002994-1zjrunzc	104	19	african	african	ADJ
cord-002994-1zjrunzc	104	20	bagv	bagv	PROPN
cord-002994-1zjrunzc	104	21	isolates	isolate	NOUN
cord-002994-1zjrunzc	104	22	were	be	AUX
cord-002994-1zjrunzc	104	23	obtained	obtain	VERB
cord-002994-1zjrunzc	104	24	by	by	ADP
cord-002994-1zjrunzc	104	25	sequencing	sequence	VERB
cord-002994-1zjrunzc	104	26	overlapping	overlap	VERB
cord-002994-1zjrunzc	104	27	pcr	pcr	NOUN
cord-002994-1zjrunzc	104	28	amplifications	amplification	NOUN
cord-002994-1zjrunzc	104	29	covering	cover	VERB
cord-002994-1zjrunzc	104	30	the	the	DET
cord-002994-1zjrunzc	104	31	genome	genome	NOUN
cord-002994-1zjrunzc	104	32	and	and	CCONJ
cord-002994-1zjrunzc	104	33	by	by	ADP
cord-002994-1zjrunzc	104	34	using	use	VERB
cord-002994-1zjrunzc	104	35	race	race	NOUN
cord-002994-1zjrunzc	104	36	(	(	PUNCT
cord-002994-1zjrunzc	104	37	rapid	rapid	ADJ
cord-002994-1zjrunzc	104	38	amplification	amplification	NOUN
cord-002994-1zjrunzc	104	39	of	of	ADP
cord-002994-1zjrunzc	104	40	cdna	cdna	PROPN
cord-002994-1zjrunzc	104	41	ends	end	VERB
cord-002994-1zjrunzc	104	42	)	)	PUNCT
cord-002994-1zjrunzc	104	43	techniques	technique	NOUN
cord-002994-1zjrunzc	104	44	for	for	ADP
cord-002994-1zjrunzc	104	45	the	the	DET
cord-002994-1zjrunzc	104	46	terminal	terminal	NOUN
cord-002994-1zjrunzc	104	47	ends	end	VERB
cord-002994-1zjrunzc	104	48	and	and	CCONJ
cord-002994-1zjrunzc	104	49	deposited	deposit	VERB
cord-002994-1zjrunzc	104	50	in	in	ADP
cord-002994-1zjrunzc	104	51	genbank	genbank	PROPN
cord-002994-1zjrunzc	104	52	(	(	PUNCT
cord-002994-1zjrunzc	104	53	www.ncbi.nlm.nih.gov/genbank/	www.ncbi.nlm.nih.gov/genbank/	PROPN
cord-002994-1zjrunzc	104	54	)	)	PUNCT
cord-002994-1zjrunzc	104	55	(	(	PUNCT
cord-002994-1zjrunzc	104	56	accession	accession	NOUN
cord-002994-1zjrunzc	104	57	numbers	number	NOUN
cord-002994-1zjrunzc	104	58	:	:	PUNCT
cord-002994-1zjrunzc	104	59	mf380424	mf380424	PROPN
cord-002994-1zjrunzc	104	60	-	-	PUNCT
cord-002994-1zjrunzc	104	61	34	34	NUM
cord-002994-1zjrunzc	104	62	)	)	PUNCT
cord-002994-1zjrunzc	104	63	(	(	PUNCT
cord-002994-1zjrunzc	104	64	table	table	NOUN
cord-002994-1zjrunzc	104	65	1	1	NUM
cord-002994-1zjrunzc	104	66	)	)	PUNCT
cord-002994-1zjrunzc	104	67	.	.	PUNCT
cord-002994-1zjrunzc	105	1	analysis	analysis	NOUN
cord-002994-1zjrunzc	105	2	of	of	ADP
cord-002994-1zjrunzc	105	3	new	new	ADJ
cord-002994-1zjrunzc	105	4	characterized	characterized	ADJ
cord-002994-1zjrunzc	105	5	bagv	bagv	NOUN
cord-002994-1zjrunzc	105	6	complete	complete	ADJ
cord-002994-1zjrunzc	105	7	open	open	ADJ
cord-002994-1zjrunzc	105	8	reading	reading	NOUN
cord-002994-1zjrunzc	105	9	frames	frame	NOUN
cord-002994-1zjrunzc	105	10	(	(	PUNCT
cord-002994-1zjrunzc	105	11	orfs	orfs	PROPN
cord-002994-1zjrunzc	105	12	)	)	PUNCT
cord-002994-1zjrunzc	105	13	was	be	AUX
cord-002994-1zjrunzc	105	14	performed	perform	VERB
cord-002994-1zjrunzc	105	15	at	at	ADP
cord-002994-1zjrunzc	105	16	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	105	17	and	and	CCONJ
cord-002994-1zjrunzc	105	18	amino	amino	NOUN
cord-002994-1zjrunzc	105	19	acid	acid	NOUN
cord-002994-1zjrunzc	105	20	levels	level	NOUN
cord-002994-1zjrunzc	105	21	including	include	VERB
cord-002994-1zjrunzc	105	22	previously	previously	ADV
cord-002994-1zjrunzc	105	23	available	available	ADJ
cord-002994-1zjrunzc	105	24	sequences	sequence	NOUN
cord-002994-1zjrunzc	105	25	from	from	ADP
cord-002994-1zjrunzc	105	26	car	car	NOUN
cord-002994-1zjrunzc	105	27	(	(	PUNCT
cord-002994-1zjrunzc	105	28	isolate	isolate	VERB
cord-002994-1zjrunzc	105	29	dakarb209_car_1966	dakarb209_car_1966	PROPN
cord-002994-1zjrunzc	105	30	,	,	PUNCT
cord-002994-1zjrunzc	105	31	accession	accession	NOUN
cord-002994-1zjrunzc	105	32	no	no	NOUN
cord-002994-1zjrunzc	105	33	.	.	PUNCT
cord-002994-1zjrunzc	105	34	ay632545	ay632545	PROPN
cord-002994-1zjrunzc	105	35	)	)	PUNCT
cord-002994-1zjrunzc	105	36	and	and	CCONJ
cord-002994-1zjrunzc	105	37	spain	spain	PROPN
cord-002994-1zjrunzc	105	38	(	(	PUNCT
cord-002994-1zjrunzc	105	39	isolate	isolate	PROPN
cord-002994-1zjrunzc	105	40	spain_h_2010	spain_h_2010	PROPN
cord-002994-1zjrunzc	105	41	,	,	PUNCT
cord-002994-1zjrunzc	105	42	accession	accession	NOUN
cord-002994-1zjrunzc	105	43	no	no	PROPN
cord-002994-1zjrunzc	105	44	.	.	PUNCT
cord-002994-1zjrunzc	105	45	hq644143	hq644143	PROPN
cord-002994-1zjrunzc	105	46	)	)	PUNCT
cord-002994-1zjrunzc	105	47	into	into	ADP
cord-002994-1zjrunzc	105	48	multiple	multiple	ADJ
cord-002994-1zjrunzc	105	49	sequence	sequence	NOUN
cord-002994-1zjrunzc	105	50	alignments	alignment	NOUN
cord-002994-1zjrunzc	105	51	.	.	PUNCT
cord-002994-1zjrunzc	106	1	the	the	DET
cord-002994-1zjrunzc	106	2	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	106	3	length	length	NOUN
cord-002994-1zjrunzc	106	4	of	of	ADP
cord-002994-1zjrunzc	106	5	the	the	DET
cord-002994-1zjrunzc	106	6	newly	newly	ADV
cord-002994-1zjrunzc	106	7	sequenced	sequence	VERB
cord-002994-1zjrunzc	106	8	west	west	PROPN
cord-002994-1zjrunzc	106	9	african	african	ADJ
cord-002994-1zjrunzc	106	10	bagv	bagv	PROPN
cord-002994-1zjrunzc	106	11	isolates	isolate	VERB
cord-002994-1zjrunzc	106	12	was	be	AUX
cord-002994-1zjrunzc	106	13	determined	determine	VERB
cord-002994-1zjrunzc	106	14	with	with	ADP
cord-002994-1zjrunzc	106	15	respect	respect	NOUN
cord-002994-1zjrunzc	106	16	to	to	ADP
cord-002994-1zjrunzc	106	17	gene	gene	NOUN
cord-002994-1zjrunzc	106	18	sizes	size	NOUN
cord-002994-1zjrunzc	106	19	(	(	PUNCT
cord-002994-1zjrunzc	106	20	table	table	NOUN
cord-002994-1zjrunzc	106	21	3	3	NUM
cord-002994-1zjrunzc	106	22	)	)	PUNCT
cord-002994-1zjrunzc	106	23	.	.	PUNCT
cord-002994-1zjrunzc	107	1	although	although	SCONJ
cord-002994-1zjrunzc	107	2	the	the	DET
cord-002994-1zjrunzc	107	3	5	5	NUM
cord-002994-1zjrunzc	107	4	utr	utr	NOUN
cord-002994-1zjrunzc	107	5	was	be	AUX
cord-002994-1zjrunzc	107	6	similar	similar	ADJ
cord-002994-1zjrunzc	107	7	in	in	ADP
cord-002994-1zjrunzc	107	8	length	length	NOUN
cord-002994-1zjrunzc	107	9	,	,	PUNCT
cord-002994-1zjrunzc	107	10	the	the	DET
cord-002994-1zjrunzc	107	11	3	3	NUM
cord-002994-1zjrunzc	107	12	utr	utr	NOUN
cord-002994-1zjrunzc	107	13	of	of	ADP
cord-002994-1zjrunzc	107	14	these	these	DET
cord-002994-1zjrunzc	107	15	west	west	ADJ
cord-002994-1zjrunzc	107	16	african	african	ADJ
cord-002994-1zjrunzc	107	17	isolates	isolate	NOUN
cord-002994-1zjrunzc	107	18	was	be	AUX
cord-002994-1zjrunzc	107	19	either	either	CCONJ
cord-002994-1zjrunzc	107	20	10	10	NUM
cord-002994-1zjrunzc	107	21	nt	not	PART
cord-002994-1zjrunzc	107	22	or	or	CCONJ
cord-002994-1zjrunzc	107	23	137	137	NUM
cord-002994-1zjrunzc	107	24	nt	not	PART
cord-002994-1zjrunzc	107	25	longer	long	ADJ
cord-002994-1zjrunzc	107	26	than	than	ADP
cord-002994-1zjrunzc	107	27	those	those	PRON
cord-002994-1zjrunzc	107	28	of	of	ADP
cord-002994-1zjrunzc	107	29	sequences	sequence	NOUN
cord-002994-1zjrunzc	107	30	from	from	ADP
cord-002994-1zjrunzc	107	31	car	car	NOUN
cord-002994-1zjrunzc	107	32	and	and	CCONJ
cord-002994-1zjrunzc	107	33	spain	spain	PROPN
cord-002994-1zjrunzc	107	34	,	,	PUNCT
cord-002994-1zjrunzc	107	35	respectively	respectively	ADV
cord-002994-1zjrunzc	107	36	.	.	PUNCT
cord-002994-1zjrunzc	108	1	in	in	ADP
cord-002994-1zjrunzc	108	2	the	the	DET
cord-002994-1zjrunzc	108	3	5	5	NUM
cord-002994-1zjrunzc	108	4	utr	utr	NOUN
cord-002994-1zjrunzc	108	5	,	,	PUNCT
cord-002994-1zjrunzc	108	6	positions	position	NOUN
cord-002994-1zjrunzc	108	7	52	52	NUM
cord-002994-1zjrunzc	108	8	,	,	PUNCT
cord-002994-1zjrunzc	108	9	55	55	NUM
cord-002994-1zjrunzc	108	10	and	and	CCONJ
cord-002994-1zjrunzc	108	11	93	93	NUM
cord-002994-1zjrunzc	108	12	had	have	VERB
cord-002994-1zjrunzc	108	13	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	108	14	changes	change	NOUN
cord-002994-1zjrunzc	108	15	that	that	PRON
cord-002994-1zjrunzc	108	16	were	be	AUX
cord-002994-1zjrunzc	108	17	distinguishable	distinguishable	ADJ
cord-002994-1zjrunzc	108	18	for	for	ADP
cord-002994-1zjrunzc	108	19	west	west	ADJ
cord-002994-1zjrunzc	108	20	african	african	ADJ
cord-002994-1zjrunzc	108	21	isolates	isolate	NOUN
cord-002994-1zjrunzc	108	22	.	.	PUNCT
cord-002994-1zjrunzc	109	1	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	109	2	changes	change	VERB
cord-002994-1zjrunzc	109	3	a	a	PRON
cord-002994-1zjrunzc	109	4	to	to	ADP
cord-002994-1zjrunzc	109	5	c	c	NOUN
cord-002994-1zjrunzc	109	6	at	at	ADP
cord-002994-1zjrunzc	109	7	position	position	NOUN
cord-002994-1zjrunzc	109	8	52	52	NUM
cord-002994-1zjrunzc	109	9	and	and	CCONJ
cord-002994-1zjrunzc	109	10	t	t	PROPN
cord-002994-1zjrunzc	109	11	to	to	PART
cord-002994-1zjrunzc	109	12	c	c	VERB
cord-002994-1zjrunzc	109	13	at	at	ADP
cord-002994-1zjrunzc	109	14	position	position	NOUN
cord-002994-1zjrunzc	109	15	55	55	NUM
cord-002994-1zjrunzc	109	16	were	be	AUX
cord-002994-1zjrunzc	109	17	seen	see	VERB
cord-002994-1zjrunzc	109	18	in	in	ADP
cord-002994-1zjrunzc	109	19	west	west	PROPN
cord-002994-1zjrunzc	109	20	african	african	ADJ
cord-002994-1zjrunzc	109	21	sequences	sequence	NOUN
cord-002994-1zjrunzc	109	22	,	,	PUNCT
cord-002994-1zjrunzc	109	23	and	and	CCONJ
cord-002994-1zjrunzc	109	24	a	a	DET
cord-002994-1zjrunzc	109	25	t	t	NOUN
cord-002994-1zjrunzc	109	26	to	to	PART
cord-002994-1zjrunzc	109	27	c	c	PART
cord-002994-1zjrunzc	109	28	change	change	VERB
cord-002994-1zjrunzc	109	29	at	at	ADP
cord-002994-1zjrunzc	109	30	position	position	NOUN
cord-002994-1zjrunzc	109	31	93	93	NUM
cord-002994-1zjrunzc	109	32	was	be	AUX
cord-002994-1zjrunzc	109	33	observed	observe	VERB
cord-002994-1zjrunzc	109	34	only	only	ADV
cord-002994-1zjrunzc	109	35	in	in	ADP
cord-002994-1zjrunzc	109	36	sequences	sequence	NOUN
cord-002994-1zjrunzc	109	37	of	of	ADP
cord-002994-1zjrunzc	109	38	the	the	DET
cord-002994-1zjrunzc	109	39	isolates	isolate	NOUN
cord-002994-1zjrunzc	109	40	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	109	41	-	-	PUNCT
cord-002994-1zjrunzc	109	42	bango_sen_1989	bango_sen_1989	NOUN
cord-002994-1zjrunzc	109	43	and	and	CCONJ
cord-002994-1zjrunzc	109	44	ara23139_dezidougou_ci_1988	ara23139_dezidougou_ci_1988	PROPN
cord-002994-1zjrunzc	109	45	.	.	PROPN
cord-002994-1zjrunzc	110	1	interestingly	interestingly	ADV
cord-002994-1zjrunzc	110	2	,	,	PUNCT
cord-002994-1zjrunzc	110	3	the	the	DET
cord-002994-1zjrunzc	110	4	3	3	NUM
cord-002994-1zjrunzc	110	5	utr	utr	NOUN
cord-002994-1zjrunzc	110	6	can	can	AUX
cord-002994-1zjrunzc	110	7	be	be	AUX
cord-002994-1zjrunzc	110	8	divided	divide	VERB
cord-002994-1zjrunzc	110	9	into	into	ADP
cord-002994-1zjrunzc	110	10	three	three	NUM
cord-002994-1zjrunzc	110	11	sections	section	NOUN
cord-002994-1zjrunzc	110	12	;	;	PUNCT
cord-002994-1zjrunzc	110	13	a	a	DET
cord-002994-1zjrunzc	110	14	proximal	proximal	ADJ
cord-002994-1zjrunzc	110	15	highly	highly	ADV
cord-002994-1zjrunzc	110	16	variable	variable	ADJ
cord-002994-1zjrunzc	110	17	section	section	NOUN
cord-002994-1zjrunzc	110	18	constituted	constitute	VERB
cord-002994-1zjrunzc	110	19	by	by	ADP
cord-002994-1zjrunzc	110	20	the	the	DET
cord-002994-1zjrunzc	110	21	139	139	NUM
cord-002994-1zjrunzc	110	22	first	first	ADJ
cord-002994-1zjrunzc	110	23	nucleotides	nucleotide	NOUN
cord-002994-1zjrunzc	110	24	following	follow	VERB
cord-002994-1zjrunzc	110	25	the	the	DET
cord-002994-1zjrunzc	110	26	stop	stop	NOUN
cord-002994-1zjrunzc	110	27	codon	codon	PROPN
cord-002994-1zjrunzc	110	28	,	,	PUNCT
cord-002994-1zjrunzc	110	29	a	a	DET
cord-002994-1zjrunzc	110	30	second	second	ADJ
cord-002994-1zjrunzc	110	31	highly	highly	ADV
cord-002994-1zjrunzc	110	32	conservative	conservative	ADJ
cord-002994-1zjrunzc	110	33	section	section	NOUN
cord-002994-1zjrunzc	110	34	located	locate	VERB
cord-002994-1zjrunzc	110	35	between	between	ADP
cord-002994-1zjrunzc	110	36	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	110	37	positions	position	NOUN
cord-002994-1zjrunzc	110	38	140	140	NUM
cord-002994-1zjrunzc	110	39	and	and	CCONJ
cord-002994-1zjrunzc	110	40	434	434	NUM
cord-002994-1zjrunzc	110	41	and	and	CCONJ
cord-002994-1zjrunzc	110	42	a	a	DET
cord-002994-1zjrunzc	110	43	moderately	moderately	ADV
cord-002994-1zjrunzc	110	44	variable	variable	ADJ
cord-002994-1zjrunzc	110	45	distal	distal	ADJ
cord-002994-1zjrunzc	110	46	region	region	NOUN
cord-002994-1zjrunzc	110	47	comprising	comprise	VERB
cord-002994-1zjrunzc	110	48	the	the	DET
cord-002994-1zjrunzc	110	49	last	last	ADJ
cord-002994-1zjrunzc	110	50	142	142	NUM
cord-002994-1zjrunzc	110	51	nucleotides	nucleotide	NOUN
cord-002994-1zjrunzc	110	52	.	.	PUNCT
cord-002994-1zjrunzc	111	1	in	in	ADP
cord-002994-1zjrunzc	111	2	this	this	DET
cord-002994-1zjrunzc	111	3	distal	distal	ADJ
cord-002994-1zjrunzc	111	4	section	section	NOUN
cord-002994-1zjrunzc	111	5	,	,	PUNCT
cord-002994-1zjrunzc	111	6	3	3	NUM
cord-002994-1zjrunzc	111	7	utr	utr	NOUN
cord-002994-1zjrunzc	111	8	sequences	sequence	NOUN
cord-002994-1zjrunzc	111	9	of	of	ADP
cord-002994-1zjrunzc	111	10	west	west	PROPN
cord-002994-1zjrunzc	111	11	african	african	ADJ
cord-002994-1zjrunzc	111	12	isolates	isolate	NOUN
cord-002994-1zjrunzc	111	13	presented	present	VERB
cord-002994-1zjrunzc	111	14	insertions	insertion	NOUN
cord-002994-1zjrunzc	111	15	of	of	ADP
cord-002994-1zjrunzc	111	16	74	74	NUM
cord-002994-1zjrunzc	111	17	nt	not	PART
cord-002994-1zjrunzc	111	18	and	and	CCONJ
cord-002994-1zjrunzc	111	19	1	1	NUM
cord-002994-1zjrunzc	111	20	nt	not	PART
cord-002994-1zjrunzc	111	21	,	,	PUNCT
cord-002994-1zjrunzc	111	22	compared	compare	VERB
cord-002994-1zjrunzc	111	23	to	to	ADP
cord-002994-1zjrunzc	111	24	the	the	DET
cord-002994-1zjrunzc	111	25	isolates	isolate	NOUN
cord-002994-1zjrunzc	111	26	from	from	ADP
cord-002994-1zjrunzc	111	27	car	car	NOUN
cord-002994-1zjrunzc	111	28	and	and	CCONJ
cord-002994-1zjrunzc	111	29	spanish	spanish	ADJ
cord-002994-1zjrunzc	111	30	(	(	PUNCT
cord-002994-1zjrunzc	111	31	kr108244	kr108244	NOUN
cord-002994-1zjrunzc	111	32	-	-	PUNCT
cord-002994-1zjrunzc	111	33	6	6	NUM
cord-002994-1zjrunzc	111	34	)	)	PUNCT
cord-002994-1zjrunzc	111	35	,	,	PUNCT
cord-002994-1zjrunzc	111	36	respectively	respectively	ADV
cord-002994-1zjrunzc	111	37	.	.	PUNCT
cord-002994-1zjrunzc	112	1	pairwise	pairwise	NOUN
cord-002994-1zjrunzc	112	2	genetic	genetic	ADJ
cord-002994-1zjrunzc	112	3	distances	distance	NOUN
cord-002994-1zjrunzc	112	4	of	of	ADP
cord-002994-1zjrunzc	112	5	coding	code	VERB
cord-002994-1zjrunzc	112	6	sequences	sequence	NOUN
cord-002994-1zjrunzc	112	7	were	be	AUX
cord-002994-1zjrunzc	112	8	evaluated	evaluate	VERB
cord-002994-1zjrunzc	112	9	at	at	ADP
cord-002994-1zjrunzc	112	10	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	112	11	and	and	CCONJ
cord-002994-1zjrunzc	112	12	amino	amino	NOUN
cord-002994-1zjrunzc	112	13	acid	acid	NOUN
cord-002994-1zjrunzc	112	14	levels	level	NOUN
cord-002994-1zjrunzc	112	15	between	between	ADP
cord-002994-1zjrunzc	112	16	isolates	isolate	NOUN
cord-002994-1zjrunzc	112	17	characterized	characterize	VERB
cord-002994-1zjrunzc	112	18	in	in	ADP
cord-002994-1zjrunzc	112	19	this	this	DET
cord-002994-1zjrunzc	112	20	study	study	NOUN
cord-002994-1zjrunzc	112	21	and	and	CCONJ
cord-002994-1zjrunzc	112	22	in	in	ADP
cord-002994-1zjrunzc	112	23	comparison	comparison	NOUN
cord-002994-1zjrunzc	112	24	with	with	ADP
cord-002994-1zjrunzc	112	25	previously	previously	ADV
cord-002994-1zjrunzc	112	26	available	available	ADJ
cord-002994-1zjrunzc	112	27	bagv	bagv	NOUN
cord-002994-1zjrunzc	112	28	sequences	sequence	NOUN
cord-002994-1zjrunzc	112	29	(	(	PUNCT
cord-002994-1zjrunzc	112	30	figure	figure	NOUN
cord-002994-1zjrunzc	112	31	1	1	NUM
cord-002994-1zjrunzc	112	32	)	)	PUNCT
cord-002994-1zjrunzc	112	33	.	.	PUNCT
cord-002994-1zjrunzc	113	1	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	113	2	sequences	sequence	NOUN
cord-002994-1zjrunzc	113	3	of	of	ADP
cord-002994-1zjrunzc	113	4	bagv	bagv	PROPN
cord-002994-1zjrunzc	113	5	isolated	isolate	VERB
cord-002994-1zjrunzc	113	6	from	from	ADP
cord-002994-1zjrunzc	113	7	senegal	senegal	PROPN
cord-002994-1zjrunzc	113	8	showed	show	VERB
cord-002994-1zjrunzc	113	9	a	a	DET
cord-002994-1zjrunzc	113	10	mean	mean	ADJ
cord-002994-1zjrunzc	113	11	distance	distance	NOUN
cord-002994-1zjrunzc	113	12	of	of	ADP
cord-002994-1zjrunzc	113	13	1.9	1.9	NUM
cord-002994-1zjrunzc	113	14	%	%	NOUN
cord-002994-1zjrunzc	113	15	±	±	PART
cord-002994-1zjrunzc	113	16	0.8	0.8	NUM
cord-002994-1zjrunzc	113	17	%	%	NOUN
cord-002994-1zjrunzc	113	18	(	(	PUNCT
cord-002994-1zjrunzc	113	19	0.3	0.3	NUM
cord-002994-1zjrunzc	113	20	-	-	SYM
cord-002994-1zjrunzc	113	21	3.4	3.4	NUM
cord-002994-1zjrunzc	113	22	%	%	NOUN
cord-002994-1zjrunzc	113	23	)	)	PUNCT
cord-002994-1zjrunzc	113	24	.	.	PUNCT
cord-002994-1zjrunzc	114	1	this	this	DET
cord-002994-1zjrunzc	114	2	lowest	low	ADJ
cord-002994-1zjrunzc	114	3	genetic	genetic	ADJ
cord-002994-1zjrunzc	114	4	distance	distance	NOUN
cord-002994-1zjrunzc	114	5	was	be	AUX
cord-002994-1zjrunzc	114	6	also	also	ADV
cord-002994-1zjrunzc	114	7	apparent	apparent	ADJ
cord-002994-1zjrunzc	114	8	at	at	ADP
cord-002994-1zjrunzc	114	9	amino	amino	NOUN
cord-002994-1zjrunzc	114	10	acid	acid	NOUN
cord-002994-1zjrunzc	114	11	level	level	NOUN
cord-002994-1zjrunzc	114	12	with	with	ADP
cord-002994-1zjrunzc	114	13	a	a	DET
cord-002994-1zjrunzc	114	14	mean	mean	ADJ
cord-002994-1zjrunzc	114	15	distance	distance	NOUN
cord-002994-1zjrunzc	114	16	of	of	ADP
cord-002994-1zjrunzc	114	17	1.9	1.9	NUM
cord-002994-1zjrunzc	114	18	%	%	NOUN
cord-002994-1zjrunzc	114	19	±	±	NOUN
cord-002994-1zjrunzc	114	20	0.6	0.6	NUM
cord-002994-1zjrunzc	114	21	%	%	NOUN
cord-002994-1zjrunzc	114	22	(	(	PUNCT
cord-002994-1zjrunzc	114	23	0.4	0.4	NUM
cord-002994-1zjrunzc	114	24	-	-	SYM
cord-002994-1zjrunzc	114	25	3.7	3.7	NUM
cord-002994-1zjrunzc	114	26	%	%	NOUN
cord-002994-1zjrunzc	114	27	)	)	PUNCT
cord-002994-1zjrunzc	114	28	.	.	PUNCT
cord-002994-1zjrunzc	115	1	here	here	ADV
cord-002994-1zjrunzc	115	2	,	,	PUNCT
cord-002994-1zjrunzc	115	3	we	we	PRON
cord-002994-1zjrunzc	115	4	described	describe	VERB
cord-002994-1zjrunzc	115	5	location	location	NOUN
cord-002994-1zjrunzc	115	6	of	of	ADP
cord-002994-1zjrunzc	115	7	main	main	ADJ
cord-002994-1zjrunzc	115	8	conserved	conserved	ADJ
cord-002994-1zjrunzc	115	9	amino	amino	NOUN
cord-002994-1zjrunzc	115	10	acid	acid	NOUN
cord-002994-1zjrunzc	115	11	motifs	motif	NOUN
cord-002994-1zjrunzc	115	12	on	on	ADP
cord-002994-1zjrunzc	115	13	bagv	bagv	NOUN
cord-002994-1zjrunzc	115	14	proteins	protein	NOUN
cord-002994-1zjrunzc	115	15	using	use	VERB
cord-002994-1zjrunzc	115	16	in	in	ADP
cord-002994-1zjrunzc	115	17	silico	silico	NOUN
cord-002994-1zjrunzc	115	18	analysis	analysis	NOUN
cord-002994-1zjrunzc	115	19	of	of	ADP
cord-002994-1zjrunzc	115	20	complete	complete	ADJ
cord-002994-1zjrunzc	115	21	genome	genome	NOUN
cord-002994-1zjrunzc	115	22	sequences	sequence	NOUN
cord-002994-1zjrunzc	115	23	of	of	ADP
cord-002994-1zjrunzc	115	24	the	the	DET
cord-002994-1zjrunzc	115	25	11	11	NUM
cord-002994-1zjrunzc	115	26	west	west	PROPN
cord-002994-1zjrunzc	115	27	african	african	ADJ
cord-002994-1zjrunzc	115	28	bagv	bagv	PROPN
cord-002994-1zjrunzc	115	29	isolates	isolate	VERB
cord-002994-1zjrunzc	115	30	characterized	characterize	VERB
cord-002994-1zjrunzc	115	31	in	in	ADP
cord-002994-1zjrunzc	115	32	this	this	DET
cord-002994-1zjrunzc	115	33	study	study	NOUN
cord-002994-1zjrunzc	115	34	and	and	CCONJ
cord-002994-1zjrunzc	115	35	sequences	sequence	NOUN
cord-002994-1zjrunzc	115	36	from	from	ADP
cord-002994-1zjrunzc	115	37	india	india	PROPN
cord-002994-1zjrunzc	115	38	,	,	PUNCT
cord-002994-1zjrunzc	115	39	car	car	PROPN
cord-002994-1zjrunzc	115	40	and	and	CCONJ
cord-002994-1zjrunzc	115	41	spain	spain	PROPN
cord-002994-1zjrunzc	115	42	.	.	PUNCT
cord-002994-1zjrunzc	116	1	most	most	ADJ
cord-002994-1zjrunzc	116	2	of	of	ADP
cord-002994-1zjrunzc	116	3	highly	highly	ADV
cord-002994-1zjrunzc	116	4	conserved	conserved	ADJ
cord-002994-1zjrunzc	116	5	amino	amino	NOUN
cord-002994-1zjrunzc	116	6	acid	acid	NOUN
cord-002994-1zjrunzc	116	7	motifs	motif	NOUN
cord-002994-1zjrunzc	116	8	localized	localize	VERB
cord-002994-1zjrunzc	116	9	across	across	ADP
cord-002994-1zjrunzc	116	10	e	e	PROPN
cord-002994-1zjrunzc	116	11	,	,	PUNCT
cord-002994-1zjrunzc	116	12	ns1	ns1	PROPN
cord-002994-1zjrunzc	116	13	,	,	PUNCT
cord-002994-1zjrunzc	116	14	ns3	ns3	NOUN
cord-002994-1zjrunzc	116	15	and	and	CCONJ
cord-002994-1zjrunzc	116	16	ns5	ns5	ADJ
cord-002994-1zjrunzc	116	17	proteins	protein	NOUN
cord-002994-1zjrunzc	116	18	of	of	ADP
cord-002994-1zjrunzc	116	19	mvfs	mvfs	NOUN
cord-002994-1zjrunzc	116	20	were	be	AUX
cord-002994-1zjrunzc	116	21	identified	identify	VERB
cord-002994-1zjrunzc	116	22	in	in	ADP
cord-002994-1zjrunzc	116	23	the	the	DET
cord-002994-1zjrunzc	116	24	bagv	bagv	NOUN
cord-002994-1zjrunzc	116	25	genomes	genome	NOUN
cord-002994-1zjrunzc	116	26	,	,	PUNCT
cord-002994-1zjrunzc	116	27	sometimes	sometimes	ADV
cord-002994-1zjrunzc	116	28	with	with	ADP
cord-002994-1zjrunzc	116	29	presence	presence	NOUN
cord-002994-1zjrunzc	116	30	of	of	ADP
cord-002994-1zjrunzc	116	31	conservative	conservative	ADJ
cord-002994-1zjrunzc	116	32	amino	amino	NOUN
cord-002994-1zjrunzc	116	33	acid	acid	NOUN
cord-002994-1zjrunzc	116	34	mutations	mutation	NOUN
cord-002994-1zjrunzc	116	35	(	(	PUNCT
cord-002994-1zjrunzc	116	36	positions	position	NOUN
cord-002994-1zjrunzc	116	37	highlighted	highlight	VERB
cord-002994-1zjrunzc	116	38	in	in	ADP
cord-002994-1zjrunzc	116	39	black	black	NOUN
cord-002994-1zjrunzc	116	40	)	)	PUNCT
cord-002994-1zjrunzc	116	41	or	or	CCONJ
cord-002994-1zjrunzc	116	42	non	non	ADJ
cord-002994-1zjrunzc	116	43	-	-	ADJ
cord-002994-1zjrunzc	116	44	conservative	conservative	ADJ
cord-002994-1zjrunzc	116	45	amino	amino	NOUN
cord-002994-1zjrunzc	116	46	acid	acid	NOUN
cord-002994-1zjrunzc	116	47	mutations	mutation	NOUN
cord-002994-1zjrunzc	116	48	(	(	PUNCT
cord-002994-1zjrunzc	116	49	positions	position	NOUN
cord-002994-1zjrunzc	116	50	highlighted	highlight	VERB
cord-002994-1zjrunzc	116	51	in	in	ADP
cord-002994-1zjrunzc	116	52	red	red	NOUN
cord-002994-1zjrunzc	116	53	)	)	PUNCT
cord-002994-1zjrunzc	116	54	(	(	PUNCT
cord-002994-1zjrunzc	116	55	table	table	NOUN
cord-002994-1zjrunzc	116	56	4	4	NUM
cord-002994-1zjrunzc	116	57	)	)	PUNCT
cord-002994-1zjrunzc	116	58	in	in	ADP
cord-002994-1zjrunzc	116	59	protein	protein	NOUN
cord-002994-1zjrunzc	116	60	ns1	ns1	PROPN
cord-002994-1zjrunzc	116	61	,	,	PUNCT
cord-002994-1zjrunzc	116	62	all	all	DET
cord-002994-1zjrunzc	116	63	analyzed	analyze	VERB
cord-002994-1zjrunzc	116	64	motifs	motif	NOUN
cord-002994-1zjrunzc	116	65	were	be	AUX
cord-002994-1zjrunzc	116	66	conserved	conserve	VERB
cord-002994-1zjrunzc	116	67	,	,	PUNCT
cord-002994-1zjrunzc	116	68	but	but	CCONJ
cord-002994-1zjrunzc	116	69	nc	nc	PROPN
cord-002994-1zjrunzc	116	70	t713p	t713p	NOUN
cord-002994-1zjrunzc	116	71	and	and	CCONJ
cord-002994-1zjrunzc	116	72	t713a	t713a	PROPN
cord-002994-1zjrunzc	116	73	were	be	AUX
cord-002994-1zjrunzc	116	74	observed	observe	VERB
cord-002994-1zjrunzc	116	75	in	in	ADP
cord-002994-1zjrunzc	116	76	sequences	sequence	NOUN
cord-002994-1zjrunzc	116	77	of	of	ADP
cord-002994-1zjrunzc	116	78	isolates	isolate	NOUN
cord-002994-1zjrunzc	116	79	ard171102_barkedji_sen_2004	ard171102_barkedji_sen_2004	PUNCT
cord-002994-1zjrunzc	116	80	and	and	CCONJ
cord-002994-1zjrunzc	116	81	eu684972_96363_india_1996	eu684972_96363_india_1996	PROPN
cord-002994-1zjrunzc	116	82	,	,	PUNCT
cord-002994-1zjrunzc	116	83	respectively	respectively	ADV
cord-002994-1zjrunzc	116	84	.	.	PUNCT
cord-002994-1zjrunzc	117	1	the	the	DET
cord-002994-1zjrunzc	117	2	bagv	bagv	PROPN
cord-002994-1zjrunzc	117	3	isolate	isolate	VERB
cord-002994-1zjrunzc	117	4	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	117	5	-	-	PUNCT
cord-002994-1zjrunzc	117	6	bango_sen_1989	bango_sen_1989	PROPN
cord-002994-1zjrunzc	117	7	also	also	ADV
cord-002994-1zjrunzc	117	8	contains	contain	VERB
cord-002994-1zjrunzc	117	9	nc	nc	PROPN
cord-002994-1zjrunzc	117	10	p1127	p1127	PROPN
cord-002994-1zjrunzc	117	11	t.	t.	PROPN
cord-002994-1zjrunzc	117	12	in	in	ADP
cord-002994-1zjrunzc	117	13	ns3	ns3	NOUN
cord-002994-1zjrunzc	117	14	,	,	PUNCT
cord-002994-1zjrunzc	117	15	the	the	DET
cord-002994-1zjrunzc	117	16	conserved	conserved	ADJ
cord-002994-1zjrunzc	117	17	motif	motif	NOUN
cord-002994-1zjrunzc	117	18	identified	identify	VERB
cord-002994-1zjrunzc	117	19	at	at	ADP
cord-002994-1zjrunzc	117	20	positions	position	NOUN
cord-002994-1zjrunzc	117	21	1722	1722	NUM
cord-002994-1zjrunzc	117	22	-	-	SYM
cord-002994-1zjrunzc	117	23	1728	1728	NUM
cord-002994-1zjrunzc	117	24	contains	contain	VERB
cord-002994-1zjrunzc	117	25	nc	nc	PROPN
cord-002994-1zjrunzc	117	26	a1723p	a1723p	PROPN
cord-002994-1zjrunzc	117	27	and	and	CCONJ
cord-002994-1zjrunzc	117	28	p1724l	p1724l	PROPN
cord-002994-1zjrunzc	117	29	for	for	ADP
cord-002994-1zjrunzc	117	30	bagv	bagv	NOUN
cord-002994-1zjrunzc	117	31	isolates	isolate	NOUN
cord-002994-1zjrunzc	117	32	ard137998_diawara_sen_2000	ard137998_diawara_sen_2000	PUNCT
cord-002994-1zjrunzc	117	33	and	and	CCONJ
cord-002994-1zjrunzc	117	34	ard138018_diawara	ard138018_diawara	NOUN
cord-002994-1zjrunzc	117	35	_	_	NOUN
cord-002994-1zjrunzc	117	36	sen_2000	sen_2000	NOUN
cord-002994-1zjrunzc	117	37	,	,	PUNCT
cord-002994-1zjrunzc	117	38	whereas	whereas	SCONJ
cord-002994-1zjrunzc	117	39	nc	nc	PROPN
cord-002994-1zjrunzc	117	40	l1722s	l1722s	NOUN
cord-002994-1zjrunzc	117	41	in	in	ADP
cord-002994-1zjrunzc	117	42	comparison	comparison	NOUN
cord-002994-1zjrunzc	117	43	to	to	ADP
cord-002994-1zjrunzc	117	44	sequence	sequence	NOUN
cord-002994-1zjrunzc	117	45	of	of	ADP
cord-002994-1zjrunzc	117	46	the	the	DET
cord-002994-1zjrunzc	117	47	isolate	isolate	NOUN
cord-002994-1zjrunzc	117	48	ara23139_dezidougou_ci_1988	ara23139_dezidougou_ci_1988	PROPN
cord-002994-1zjrunzc	117	49	from	from	ADP
cord-002994-1zjrunzc	117	50	côte	côte	PROPN
cord-002994-1zjrunzc	117	51	d'ivoire	d'ivoire	PROPN
cord-002994-1zjrunzc	117	52	,	,	PUNCT
cord-002994-1zjrunzc	117	53	senegalese	senegalese	PROPN
cord-002994-1zjrunzc	117	54	bagv	bagv	PROPN
cord-002994-1zjrunzc	117	55	isolates	isolate	VERB
cord-002994-1zjrunzc	117	56	showed	show	VERB
cord-002994-1zjrunzc	117	57	a	a	DET
cord-002994-1zjrunzc	117	58	higher	high	ADJ
cord-002994-1zjrunzc	117	59	mean	mean	ADJ
cord-002994-1zjrunzc	117	60	distance	distance	NOUN
cord-002994-1zjrunzc	117	61	of	of	ADP
cord-002994-1zjrunzc	117	62	3.4	3.4	NUM
cord-002994-1zjrunzc	117	63	%	%	NOUN
cord-002994-1zjrunzc	117	64	±	±	NOUN
cord-002994-1zjrunzc	117	65	0.5	0.5	NUM
cord-002994-1zjrunzc	117	66	%	%	NOUN
cord-002994-1zjrunzc	117	67	(	(	PUNCT
cord-002994-1zjrunzc	117	68	2.7	2.7	NUM
cord-002994-1zjrunzc	117	69	-	-	SYM
cord-002994-1zjrunzc	117	70	4.1	4.1	NUM
cord-002994-1zjrunzc	117	71	%	%	NOUN
cord-002994-1zjrunzc	117	72	)	)	PUNCT
cord-002994-1zjrunzc	117	73	at	at	ADP
cord-002994-1zjrunzc	117	74	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	117	75	level	level	NOUN
cord-002994-1zjrunzc	117	76	.	.	PUNCT
cord-002994-1zjrunzc	118	1	however	however	ADV
cord-002994-1zjrunzc	118	2	,	,	PUNCT
cord-002994-1zjrunzc	118	3	this	this	DET
cord-002994-1zjrunzc	118	4	highest	high	ADJ
cord-002994-1zjrunzc	118	5	genetic	genetic	ADJ
cord-002994-1zjrunzc	118	6	distance	distance	NOUN
cord-002994-1zjrunzc	118	7	was	be	AUX
cord-002994-1zjrunzc	118	8	less	less	ADV
cord-002994-1zjrunzc	118	9	apparent	apparent	ADJ
cord-002994-1zjrunzc	118	10	at	at	ADP
cord-002994-1zjrunzc	118	11	amino	amino	NOUN
cord-002994-1zjrunzc	118	12	acid	acid	NOUN
cord-002994-1zjrunzc	118	13	level	level	NOUN
cord-002994-1zjrunzc	118	14	with	with	ADP
cord-002994-1zjrunzc	118	15	a	a	DET
cord-002994-1zjrunzc	118	16	mean	mean	ADJ
cord-002994-1zjrunzc	118	17	distance	distance	NOUN
cord-002994-1zjrunzc	118	18	of	of	ADP
cord-002994-1zjrunzc	118	19	1.7	1.7	NUM
cord-002994-1zjrunzc	118	20	%	%	NOUN
cord-002994-1zjrunzc	118	21	±	±	NOUN
cord-002994-1zjrunzc	118	22	0.7	0.7	NUM
cord-002994-1zjrunzc	118	23	%	%	NOUN
cord-002994-1zjrunzc	118	24	(	(	PUNCT
cord-002994-1zjrunzc	118	25	2.7	2.7	NUM
cord-002994-1zjrunzc	118	26	-	-	SYM
cord-002994-1zjrunzc	118	27	4.1	4.1	NUM
cord-002994-1zjrunzc	118	28	%	%	NOUN
cord-002994-1zjrunzc	118	29	)	)	PUNCT
cord-002994-1zjrunzc	118	30	.	.	PUNCT
cord-002994-1zjrunzc	119	1	furthermore	furthermore	ADV
cord-002994-1zjrunzc	119	2	,	,	PUNCT
cord-002994-1zjrunzc	119	3	mean	mean	ADJ
cord-002994-1zjrunzc	119	4	distances	distance	NOUN
cord-002994-1zjrunzc	119	5	of	of	ADP
cord-002994-1zjrunzc	119	6	6.7	6.7	NUM
cord-002994-1zjrunzc	119	7	%	%	NOUN
cord-002994-1zjrunzc	119	8	(	(	PUNCT
cord-002994-1zjrunzc	119	9	6.2	6.2	NUM
cord-002994-1zjrunzc	119	10	-	-	SYM
cord-002994-1zjrunzc	119	11	7.3	7.3	NUM
cord-002994-1zjrunzc	119	12	%	%	NOUN
cord-002994-1zjrunzc	119	13	)	)	PUNCT
cord-002994-1zjrunzc	119	14	,	,	PUNCT
cord-002994-1zjrunzc	119	15	1.3	1.3	NUM
cord-002994-1zjrunzc	119	16	%	%	NOUN
cord-002994-1zjrunzc	119	17	(	(	PUNCT
cord-002994-1zjrunzc	119	18	0.2	0.2	NUM
cord-002994-1zjrunzc	119	19	-	-	SYM
cord-002994-1zjrunzc	119	20	2.7	2.7	NUM
cord-002994-1zjrunzc	119	21	%	%	NOUN
cord-002994-1zjrunzc	119	22	)	)	PUNCT
cord-002994-1zjrunzc	119	23	,	,	PUNCT
cord-002994-1zjrunzc	119	24	5.8	5.8	NUM
cord-002994-1zjrunzc	119	25	%	%	NOUN
cord-002994-1zjrunzc	119	26	(	(	PUNCT
cord-002994-1zjrunzc	119	27	5.2	5.2	NUM
cord-002994-1zjrunzc	119	28	-	-	SYM
cord-002994-1zjrunzc	119	29	6.3	6.3	NUM
cord-002994-1zjrunzc	119	30	%	%	NOUN
cord-002994-1zjrunzc	119	31	)	)	PUNCT
cord-002994-1zjrunzc	119	32	were	be	AUX
cord-002994-1zjrunzc	119	33	recorded	record	VERB
cord-002994-1zjrunzc	119	34	at	at	ADP
cord-002994-1zjrunzc	119	35	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	119	36	level	level	NOUN
cord-002994-1zjrunzc	119	37	between	between	ADP
cord-002994-1zjrunzc	119	38	senegalese	senegalese	PROPN
cord-002994-1zjrunzc	119	39	bagv	bagv	PROPN
cord-002994-1zjrunzc	119	40	isolates	isolate	VERB
cord-002994-1zjrunzc	119	41	and	and	CCONJ
cord-002994-1zjrunzc	119	42	the	the	DET
cord-002994-1zjrunzc	119	43	isolate	isolate	NOUN
cord-002994-1zjrunzc	119	44	from	from	ADP
cord-002994-1zjrunzc	119	45	car	car	NOUN
cord-002994-1zjrunzc	119	46	,	,	PUNCT
cord-002994-1zjrunzc	119	47	spain	spain	PROPN
cord-002994-1zjrunzc	119	48	,	,	PUNCT
cord-002994-1zjrunzc	119	49	and	and	CCONJ
cord-002994-1zjrunzc	119	50	eu684972__96363_india_1996	eu684972__96363_india_1996	X
cord-002994-1zjrunzc	119	51	,	,	PUNCT
cord-002994-1zjrunzc	119	52	respectively	respectively	ADV
cord-002994-1zjrunzc	119	53	while	while	SCONJ
cord-002994-1zjrunzc	119	54	respective	respective	ADJ
cord-002994-1zjrunzc	119	55	mean	mean	NOUN
cord-002994-1zjrunzc	119	56	distances	distance	NOUN
cord-002994-1zjrunzc	119	57	were	be	AUX
cord-002994-1zjrunzc	119	58	1.5	1.5	NUM
cord-002994-1zjrunzc	119	59	%	%	NOUN
cord-002994-1zjrunzc	119	60	(	(	PUNCT
cord-002994-1zjrunzc	119	61	0.8	0.8	NUM
cord-002994-1zjrunzc	119	62	-	-	SYM
cord-002994-1zjrunzc	119	63	2.5	2.5	NUM
cord-002994-1zjrunzc	119	64	%	%	NOUN
cord-002994-1zjrunzc	119	65	)	)	PUNCT
cord-002994-1zjrunzc	119	66	,	,	PUNCT
cord-002994-1zjrunzc	119	67	1.7	1.7	NUM
cord-002994-1zjrunzc	119	68	%	%	NOUN
cord-002994-1zjrunzc	119	69	(	(	PUNCT
cord-002994-1zjrunzc	119	70	1.0	1.0	NUM
cord-002994-1zjrunzc	119	71	-	-	SYM
cord-002994-1zjrunzc	119	72	2.8	2.8	NUM
cord-002994-1zjrunzc	119	73	%	%	NOUN
cord-002994-1zjrunzc	119	74	)	)	PUNCT
cord-002994-1zjrunzc	119	75	,	,	PUNCT
cord-002994-1zjrunzc	119	76	2.7	2.7	NUM
cord-002994-1zjrunzc	119	77	%	%	NOUN
cord-002994-1zjrunzc	119	78	(	(	PUNCT
cord-002994-1zjrunzc	119	79	2.0	2.0	NUM
cord-002994-1zjrunzc	119	80	-	-	SYM
cord-002994-1zjrunzc	119	81	3.8	3.8	NUM
cord-002994-1zjrunzc	119	82	%	%	NOUN
cord-002994-1zjrunzc	119	83	)	)	PUNCT
cord-002994-1zjrunzc	119	84	at	at	ADP
cord-002994-1zjrunzc	119	85	amino	amino	NOUN
cord-002994-1zjrunzc	119	86	acid	acid	NOUN
cord-002994-1zjrunzc	119	87	level	level	NOUN
cord-002994-1zjrunzc	119	88	.	.	PUNCT
cord-002994-1zjrunzc	120	1	a	a	DET
cord-002994-1zjrunzc	120	2	differentiation	differentiation	NOUN
cord-002994-1zjrunzc	120	3	coefficient	coefficient	NOUN
cord-002994-1zjrunzc	120	4	value	value	NOUN
cord-002994-1zjrunzc	120	5	of	of	ADP
cord-002994-1zjrunzc	120	6	0.17	0.17	NUM
cord-002994-1zjrunzc	120	7	was	be	AUX
cord-002994-1zjrunzc	120	8	also	also	ADV
cord-002994-1zjrunzc	120	9	observed	observe	VERB
cord-002994-1zjrunzc	120	10	between	between	ADP
cord-002994-1zjrunzc	120	11	these	these	DET
cord-002994-1zjrunzc	120	12	west	west	PROPN
cord-002994-1zjrunzc	120	13	african	african	ADJ
cord-002994-1zjrunzc	120	14	bagv	bagv	PROPN
cord-002994-1zjrunzc	120	15	isolates	isolate	VERB
cord-002994-1zjrunzc	120	16	and	and	CCONJ
cord-002994-1zjrunzc	120	17	previously	previously	ADV
cord-002994-1zjrunzc	120	18	available	available	ADJ
cord-002994-1zjrunzc	120	19	sequences	sequence	NOUN
cord-002994-1zjrunzc	120	20	.	.	PUNCT
cord-002994-1zjrunzc	121	1	here	here	ADV
cord-002994-1zjrunzc	121	2	,	,	PUNCT
cord-002994-1zjrunzc	121	3	we	we	PRON
cord-002994-1zjrunzc	121	4	described	describe	VERB
cord-002994-1zjrunzc	121	5	location	location	NOUN
cord-002994-1zjrunzc	121	6	of	of	ADP
cord-002994-1zjrunzc	121	7	main	main	ADJ
cord-002994-1zjrunzc	121	8	conserved	conserved	ADJ
cord-002994-1zjrunzc	121	9	amino	amino	NOUN
cord-002994-1zjrunzc	121	10	acid	acid	NOUN
cord-002994-1zjrunzc	121	11	motifs	motif	NOUN
cord-002994-1zjrunzc	121	12	on	on	ADP
cord-002994-1zjrunzc	121	13	bagv	bagv	NOUN
cord-002994-1zjrunzc	121	14	proteins	protein	NOUN
cord-002994-1zjrunzc	121	15	using	use	VERB
cord-002994-1zjrunzc	121	16	in	in	ADP
cord-002994-1zjrunzc	121	17	silico	silico	NOUN
cord-002994-1zjrunzc	121	18	analysis	analysis	NOUN
cord-002994-1zjrunzc	121	19	of	of	ADP
cord-002994-1zjrunzc	121	20	complete	complete	ADJ
cord-002994-1zjrunzc	121	21	genome	genome	NOUN
cord-002994-1zjrunzc	121	22	sequences	sequence	NOUN
cord-002994-1zjrunzc	121	23	of	of	ADP
cord-002994-1zjrunzc	121	24	the	the	DET
cord-002994-1zjrunzc	121	25	11	11	NUM
cord-002994-1zjrunzc	121	26	west	west	PROPN
cord-002994-1zjrunzc	121	27	african	african	ADJ
cord-002994-1zjrunzc	121	28	bagv	bagv	PROPN
cord-002994-1zjrunzc	121	29	isolates	isolate	VERB
cord-002994-1zjrunzc	121	30	characterized	characterize	VERB
cord-002994-1zjrunzc	121	31	in	in	ADP
cord-002994-1zjrunzc	121	32	this	this	DET
cord-002994-1zjrunzc	121	33	study	study	NOUN
cord-002994-1zjrunzc	121	34	and	and	CCONJ
cord-002994-1zjrunzc	121	35	sequences	sequence	NOUN
cord-002994-1zjrunzc	121	36	from	from	ADP
cord-002994-1zjrunzc	121	37	india	india	PROPN
cord-002994-1zjrunzc	121	38	,	,	PUNCT
cord-002994-1zjrunzc	121	39	car	car	PROPN
cord-002994-1zjrunzc	121	40	and	and	CCONJ
cord-002994-1zjrunzc	121	41	spain	spain	PROPN
cord-002994-1zjrunzc	121	42	.	.	PUNCT
cord-002994-1zjrunzc	122	1	most	most	ADJ
cord-002994-1zjrunzc	122	2	of	of	ADP
cord-002994-1zjrunzc	122	3	highly	highly	ADV
cord-002994-1zjrunzc	122	4	conserved	conserved	ADJ
cord-002994-1zjrunzc	122	5	amino	amino	NOUN
cord-002994-1zjrunzc	122	6	acid	acid	NOUN
cord-002994-1zjrunzc	122	7	motifs	motif	NOUN
cord-002994-1zjrunzc	122	8	localized	localize	VERB
cord-002994-1zjrunzc	122	9	across	across	ADP
cord-002994-1zjrunzc	122	10	e	e	PROPN
cord-002994-1zjrunzc	122	11	,	,	PUNCT
cord-002994-1zjrunzc	122	12	ns1	ns1	PROPN
cord-002994-1zjrunzc	122	13	,	,	PUNCT
cord-002994-1zjrunzc	122	14	ns3	ns3	NOUN
cord-002994-1zjrunzc	122	15	and	and	CCONJ
cord-002994-1zjrunzc	122	16	ns5	ns5	ADJ
cord-002994-1zjrunzc	122	17	proteins	protein	NOUN
cord-002994-1zjrunzc	122	18	of	of	ADP
cord-002994-1zjrunzc	122	19	mvfs	mvfs	NOUN
cord-002994-1zjrunzc	122	20	were	be	AUX
cord-002994-1zjrunzc	122	21	identified	identify	VERB
cord-002994-1zjrunzc	122	22	in	in	ADP
cord-002994-1zjrunzc	122	23	the	the	DET
cord-002994-1zjrunzc	122	24	bagv	bagv	NOUN
cord-002994-1zjrunzc	122	25	genomes	genome	NOUN
cord-002994-1zjrunzc	122	26	,	,	PUNCT
cord-002994-1zjrunzc	122	27	sometimes	sometimes	ADV
cord-002994-1zjrunzc	122	28	with	with	ADP
cord-002994-1zjrunzc	122	29	presence	presence	NOUN
cord-002994-1zjrunzc	122	30	of	of	ADP
cord-002994-1zjrunzc	122	31	conservative	conservative	ADJ
cord-002994-1zjrunzc	122	32	amino	amino	NOUN
cord-002994-1zjrunzc	122	33	acid	acid	NOUN
cord-002994-1zjrunzc	122	34	mutations	mutation	NOUN
cord-002994-1zjrunzc	122	35	(	(	PUNCT
cord-002994-1zjrunzc	122	36	positions	position	NOUN
cord-002994-1zjrunzc	122	37	highlighted	highlight	VERB
cord-002994-1zjrunzc	122	38	in	in	ADP
cord-002994-1zjrunzc	122	39	black	black	NOUN
cord-002994-1zjrunzc	122	40	)	)	PUNCT
cord-002994-1zjrunzc	122	41	or	or	CCONJ
cord-002994-1zjrunzc	122	42	non	non	ADJ
cord-002994-1zjrunzc	122	43	-	-	ADJ
cord-002994-1zjrunzc	122	44	conservative	conservative	ADJ
cord-002994-1zjrunzc	122	45	amino	amino	NOUN
cord-002994-1zjrunzc	122	46	acid	acid	NOUN
cord-002994-1zjrunzc	122	47	mutations	mutation	NOUN
cord-002994-1zjrunzc	122	48	(	(	PUNCT
cord-002994-1zjrunzc	122	49	positions	position	NOUN
cord-002994-1zjrunzc	122	50	highlighted	highlight	VERB
cord-002994-1zjrunzc	122	51	in	in	ADP
cord-002994-1zjrunzc	122	52	red	red	NOUN
cord-002994-1zjrunzc	122	53	)	)	PUNCT
cord-002994-1zjrunzc	122	54	(	(	PUNCT
cord-002994-1zjrunzc	122	55	table	table	NOUN
cord-002994-1zjrunzc	122	56	4	4	NUM
cord-002994-1zjrunzc	122	57	)	)	PUNCT
cord-002994-1zjrunzc	122	58	in	in	ADP
cord-002994-1zjrunzc	122	59	protein	protein	NOUN
cord-002994-1zjrunzc	122	60	ns1	ns1	PROPN
cord-002994-1zjrunzc	122	61	,	,	PUNCT
cord-002994-1zjrunzc	122	62	all	all	DET
cord-002994-1zjrunzc	122	63	analyzed	analyze	VERB
cord-002994-1zjrunzc	122	64	motifs	motif	NOUN
cord-002994-1zjrunzc	122	65	were	be	AUX
cord-002994-1zjrunzc	122	66	conserved	conserve	VERB
cord-002994-1zjrunzc	122	67	,	,	PUNCT
cord-002994-1zjrunzc	122	68	but	but	CCONJ
cord-002994-1zjrunzc	122	69	nc	nc	PROPN
cord-002994-1zjrunzc	122	70	t713p	t713p	NOUN
cord-002994-1zjrunzc	122	71	and	and	CCONJ
cord-002994-1zjrunzc	122	72	t713a	t713a	PROPN
cord-002994-1zjrunzc	122	73	were	be	AUX
cord-002994-1zjrunzc	122	74	observed	observe	VERB
cord-002994-1zjrunzc	122	75	in	in	ADP
cord-002994-1zjrunzc	122	76	sequences	sequence	NOUN
cord-002994-1zjrunzc	122	77	of	of	ADP
cord-002994-1zjrunzc	122	78	isolates	isolate	NOUN
cord-002994-1zjrunzc	122	79	ard171102_barkedji_sen_2004	ard171102_barkedji_sen_2004	PUNCT
cord-002994-1zjrunzc	122	80	and	and	CCONJ
cord-002994-1zjrunzc	122	81	eu684972_96363_india_1996	eu684972_96363_india_1996	PROPN
cord-002994-1zjrunzc	122	82	,	,	PUNCT
cord-002994-1zjrunzc	122	83	respectively	respectively	ADV
cord-002994-1zjrunzc	122	84	.	.	PUNCT
cord-002994-1zjrunzc	123	1	the	the	DET
cord-002994-1zjrunzc	123	2	bagv	bagv	PROPN
cord-002994-1zjrunzc	123	3	isolate	isolate	VERB
cord-002994-1zjrunzc	123	4	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	123	5	-	-	PUNCT
cord-002994-1zjrunzc	123	6	bango_sen_1989	bango_sen_1989	PROPN
cord-002994-1zjrunzc	123	7	also	also	ADV
cord-002994-1zjrunzc	123	8	contains	contain	VERB
cord-002994-1zjrunzc	123	9	nc	nc	PROPN
cord-002994-1zjrunzc	123	10	p1127	p1127	PROPN
cord-002994-1zjrunzc	123	11	t.	t.	PROPN
cord-002994-1zjrunzc	123	12	in	in	ADP
cord-002994-1zjrunzc	123	13	ns3	ns3	NOUN
cord-002994-1zjrunzc	123	14	,	,	PUNCT
cord-002994-1zjrunzc	123	15	the	the	DET
cord-002994-1zjrunzc	123	16	conserved	conserved	ADJ
cord-002994-1zjrunzc	123	17	motif	motif	NOUN
cord-002994-1zjrunzc	123	18	identified	identify	VERB
cord-002994-1zjrunzc	123	19	at	at	ADP
cord-002994-1zjrunzc	123	20	positions	position	NOUN
cord-002994-1zjrunzc	123	21	1722	1722	NUM
cord-002994-1zjrunzc	123	22	-	-	SYM
cord-002994-1zjrunzc	123	23	1728	1728	NUM
cord-002994-1zjrunzc	123	24	contains	contain	VERB
cord-002994-1zjrunzc	123	25	nc	nc	PROPN
cord-002994-1zjrunzc	123	26	a1723p	a1723p	PROPN
cord-002994-1zjrunzc	123	27	and	and	CCONJ
cord-002994-1zjrunzc	123	28	p1724l	p1724l	PROPN
cord-002994-1zjrunzc	123	29	for	for	ADP
cord-002994-1zjrunzc	123	30	bagv	bagv	NOUN
cord-002994-1zjrunzc	123	31	isolates	isolate	VERB
cord-002994-1zjrunzc	123	32	ard137998	ard137998	NOUN
cord-002994-1zjrunzc	123	33	_	_	NOUN
cord-002994-1zjrunzc	124	1	diawara_sen_2000	diawara_sen_2000	PROPN
cord-002994-1zjrunzc	124	2	and	and	CCONJ
cord-002994-1zjrunzc	124	3	ard138018_diawara	ard138018_diawara	PROPN
cord-002994-1zjrunzc	124	4	_	_	NOUN
cord-002994-1zjrunzc	124	5	sen_2000	sen_2000	NOUN
cord-002994-1zjrunzc	124	6	,	,	PUNCT
cord-002994-1zjrunzc	124	7	whereas	whereas	SCONJ
cord-002994-1zjrunzc	124	8	nc	nc	PROPN
cord-002994-1zjrunzc	124	9	l1722s	l1722s	PROPN
cord-002994-1zjrunzc	124	10	is	be	AUX
cord-002994-1zjrunzc	124	11	present	present	ADJ
cord-002994-1zjrunzc	124	12	in	in	ADP
cord-002994-1zjrunzc	124	13	ard138018_diawara_sen_2000	ard138018_diawara_sen_2000	PROPN
cord-002994-1zjrunzc	124	14	,	,	PUNCT
cord-002994-1zjrunzc	124	15	and	and	CCONJ
cord-002994-1zjrunzc	124	16	ard171075_barkedji_sen_2004	ard171075_barkedji_sen_2004	PROPN
cord-002994-1zjrunzc	124	17	.	.	PROPN
cord-002994-1zjrunzc	125	1	a	a	DET
cord-002994-1zjrunzc	125	2	non	non	ADJ
cord-002994-1zjrunzc	125	3	-	-	ADJ
cord-002994-1zjrunzc	125	4	conserved	conserved	ADJ
cord-002994-1zjrunzc	125	5	motif	motif	NOUN
cord-002994-1zjrunzc	125	6	at	at	ADP
cord-002994-1zjrunzc	125	7	positions	position	NOUN
cord-002994-1zjrunzc	125	8	1759	1759	NUM
cord-002994-1zjrunzc	125	9	-	-	SYM
cord-002994-1zjrunzc	125	10	1766	1766	NUM
cord-002994-1zjrunzc	125	11	contained	contain	VERB
cord-002994-1zjrunzc	125	12	nc	nc	PROPN
cord-002994-1zjrunzc	125	13	f1766l	f1766l	PROPN
cord-002994-1zjrunzc	125	14	in	in	ADP
cord-002994-1zjrunzc	125	15	all	all	DET
cord-002994-1zjrunzc	125	16	bagv	bagv	NOUN
cord-002994-1zjrunzc	125	17	sequences	sequence	NOUN
cord-002994-1zjrunzc	125	18	analyzed	analyze	VERB
cord-002994-1zjrunzc	125	19	and	and	CCONJ
cord-002994-1zjrunzc	125	20	isolate	isolate	VERB
cord-002994-1zjrunzc	125	21	ard138018_diawara_sen_2000	ard138018_diawara_sen_2000	PROPN
cord-002994-1zjrunzc	125	22	contained	contain	VERB
cord-002994-1zjrunzc	125	23	additional	additional	ADJ
cord-002994-1zjrunzc	125	24	nc	nc	PROPN
cord-002994-1zjrunzc	125	25	t1765p	t1765p	PROPN
cord-002994-1zjrunzc	125	26	and	and	CCONJ
cord-002994-1zjrunzc	125	27	d1785y	d1785y	PROPN
cord-002994-1zjrunzc	125	28	.	.	PUNCT
cord-002994-1zjrunzc	126	1	a	a	DET
cord-002994-1zjrunzc	126	2	non	non	ADJ
cord-002994-1zjrunzc	126	3	-	-	ADJ
cord-002994-1zjrunzc	126	4	conserved	conserved	ADJ
cord-002994-1zjrunzc	126	5	motif	motif	NOUN
cord-002994-1zjrunzc	126	6	in	in	ADP
cord-002994-1zjrunzc	126	7	ns5	ns5	PROPN
cord-002994-1zjrunzc	126	8	at	at	ADP
cord-002994-1zjrunzc	126	9	positions	position	NOUN
cord-002994-1zjrunzc	126	10	2734	2734	NUM
cord-002994-1zjrunzc	126	11	-	-	PUNCT
cord-002994-1zjrunzc	126	12	2741	2741	NUM
cord-002994-1zjrunzc	126	13	contained	contain	VERB
cord-002994-1zjrunzc	126	14	nc	nc	PROPN
cord-002994-1zjrunzc	126	15	t2738n	t2738n	PROPN
cord-002994-1zjrunzc	126	16	in	in	ADP
cord-002994-1zjrunzc	126	17	all	all	DET
cord-002994-1zjrunzc	126	18	bagv	bagv	NOUN
cord-002994-1zjrunzc	126	19	sequences	sequence	NOUN
cord-002994-1zjrunzc	126	20	.	.	PUNCT
cord-002994-1zjrunzc	127	1	bagv	bagv	PROPN
cord-002994-1zjrunzc	127	2	isolate	isolate	VERB
cord-002994-1zjrunzc	127	3	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	127	4	-	-	PUNCT
cord-002994-1zjrunzc	127	5	bango_sen_1989	bango_sen_1989	PROPN
cord-002994-1zjrunzc	127	6	has	have	VERB
cord-002994-1zjrunzc	127	7	two	two	NUM
cord-002994-1zjrunzc	127	8	supplementary	supplementary	ADJ
cord-002994-1zjrunzc	127	9	mutations	mutation	NOUN
cord-002994-1zjrunzc	127	10	s2734w	s2734w	PROPN
cord-002994-1zjrunzc	127	11	and	and	CCONJ
cord-002994-1zjrunzc	127	12	s2737p	s2737p	PROPN
cord-002994-1zjrunzc	127	13	.	.	PUNCT
cord-002994-1zjrunzc	128	1	in	in	ADP
cord-002994-1zjrunzc	128	2	addition	addition	NOUN
cord-002994-1zjrunzc	128	3	,	,	PUNCT
cord-002994-1zjrunzc	128	4	these	these	DET
cord-002994-1zjrunzc	128	5	mbfvs	mbfvs	ADJ
cord-002994-1zjrunzc	128	6	amino	amino	NOUN
cord-002994-1zjrunzc	128	7	acid	acid	NOUN
cord-002994-1zjrunzc	128	8	motifs	motif	NOUN
cord-002994-1zjrunzc	128	9	were	be	AUX
cord-002994-1zjrunzc	128	10	also	also	ADV
cord-002994-1zjrunzc	128	11	mostly	mostly	ADV
cord-002994-1zjrunzc	128	12	conserved	conserve	VERB
cord-002994-1zjrunzc	128	13	in	in	ADP
cord-002994-1zjrunzc	128	14	bagv	bagv	PROPN
cord-002994-1zjrunzc	128	15	,	,	PUNCT
cord-002994-1zjrunzc	128	16	nkvfs	nkvfs	PROPN
cord-002994-1zjrunzc	128	17	and	and	CCONJ
cord-002994-1zjrunzc	128	18	cxfv	cxfv	PROPN
cord-002994-1zjrunzc	128	19	(	(	PUNCT
cord-002994-1zjrunzc	128	20	isfs	isfs	PROPN
cord-002994-1zjrunzc	128	21	)	)	PUNCT
cord-002994-1zjrunzc	128	22	than	than	ADP
cord-002994-1zjrunzc	128	23	in	in	ADP
cord-002994-1zjrunzc	128	24	aefv	aefv	PROPN
cord-002994-1zjrunzc	128	25	(	(	PUNCT
cord-002994-1zjrunzc	128	26	isfs	isfs	PROPN
cord-002994-1zjrunzc	128	27	)	)	PUNCT
cord-002994-1zjrunzc	128	28	.	.	PUNCT
cord-002994-1zjrunzc	129	1	non	non	ADJ
cord-002994-1zjrunzc	129	2	-	-	ADJ
cord-002994-1zjrunzc	129	3	conservative	conservative	ADJ
cord-002994-1zjrunzc	129	4	amino	amino	NOUN
cord-002994-1zjrunzc	129	5	acid	acid	NOUN
cord-002994-1zjrunzc	129	6	mutations	mutation	NOUN
cord-002994-1zjrunzc	129	7	on	on	ADP
cord-002994-1zjrunzc	129	8	the	the	DET
cord-002994-1zjrunzc	129	9	bagv	bagv	NOUN
cord-002994-1zjrunzc	129	10	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	129	11	might	might	AUX
cord-002994-1zjrunzc	129	12	be	be	AUX
cord-002994-1zjrunzc	129	13	associated	associate	VERB
cord-002994-1zjrunzc	129	14	to	to	ADP
cord-002994-1zjrunzc	129	15	phenotypic	phenotypic	ADJ
cord-002994-1zjrunzc	129	16	differences	difference	NOUN
cord-002994-1zjrunzc	129	17	of	of	ADP
cord-002994-1zjrunzc	129	18	bagv	bagv	NOUN
cord-002994-1zjrunzc	129	19	isolates	isolate	NOUN
cord-002994-1zjrunzc	129	20	.	.	PUNCT
cord-002994-1zjrunzc	130	1	in	in	ADP
cord-002994-1zjrunzc	130	2	addition	addition	NOUN
cord-002994-1zjrunzc	130	3	,	,	PUNCT
cord-002994-1zjrunzc	130	4	the	the	DET
cord-002994-1zjrunzc	130	5	presence	presence	NOUN
cord-002994-1zjrunzc	130	6	of	of	ADP
cord-002994-1zjrunzc	130	7	phylogenetically	phylogenetically	ADV
cord-002994-1zjrunzc	130	8	informative	informative	ADJ
cord-002994-1zjrunzc	130	9	sites	site	NOUN
cord-002994-1zjrunzc	130	10	was	be	AUX
cord-002994-1zjrunzc	130	11	assessed	assess	VERB
cord-002994-1zjrunzc	130	12	on	on	ADP
cord-002994-1zjrunzc	130	13	the	the	DET
cord-002994-1zjrunzc	130	14	divein	divein	PROPN
cord-002994-1zjrunzc	130	15	web	web	PROPN
cord-002994-1zjrunzc	130	16	server	server	NOUN
cord-002994-1zjrunzc	130	17	.	.	PUNCT
cord-002994-1zjrunzc	131	1	the	the	DET
cord-002994-1zjrunzc	131	2	identified	identify	VERB
cord-002994-1zjrunzc	131	3	site	site	NOUN
cord-002994-1zjrunzc	131	4	lap	lap	NOUN
cord-002994-1zjrunzc	131	5	is	be	AUX
cord-002994-1zjrunzc	131	6	harbored	harbor	VERB
cord-002994-1zjrunzc	131	7	by	by	ADP
cord-002994-1zjrunzc	131	8	the	the	DET
cord-002994-1zjrunzc	131	9	conserved	conserved	ADJ
cord-002994-1zjrunzc	131	10	motif	motif	NOUN
cord-002994-1zjrunzc	131	11	laptrvv	laptrvv	X
cord-002994-1zjrunzc	131	12	previously	previously	ADV
cord-002994-1zjrunzc	131	13	identified	identify	VERB
cord-002994-1zjrunzc	131	14	in	in	ADP
cord-002994-1zjrunzc	131	15	ns3	ns3	ADJ
cord-002994-1zjrunzc	131	16	protein	protein	NOUN
cord-002994-1zjrunzc	131	17	of	of	ADP
cord-002994-1zjrunzc	131	18	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	131	19	[	[	X
cord-002994-1zjrunzc	131	20	3	3	NUM
cord-002994-1zjrunzc	131	21	]	]	PUNCT
cord-002994-1zjrunzc	131	22	and	and	CCONJ
cord-002994-1zjrunzc	131	23	presents	present	VERB
cord-002994-1zjrunzc	131	24	nc	nc	PROPN
cord-002994-1zjrunzc	131	25	mutations	mutation	NOUN
cord-002994-1zjrunzc	131	26	in	in	ADP
cord-002994-1zjrunzc	131	27	the	the	DET
cord-002994-1zjrunzc	131	28	genome	genome	NOUN
cord-002994-1zjrunzc	131	29	of	of	ADP
cord-002994-1zjrunzc	131	30	three	three	NUM
cord-002994-1zjrunzc	131	31	bagv	bagv	NOUN
cord-002994-1zjrunzc	131	32	isolates	isolate	NOUN
cord-002994-1zjrunzc	131	33	.	.	PUNCT
cord-002994-1zjrunzc	132	1	in	in	ADP
cord-002994-1zjrunzc	132	2	addition	addition	NOUN
cord-002994-1zjrunzc	132	3	,	,	PUNCT
cord-002994-1zjrunzc	132	4	phylogenetically	phylogenetically	ADV
cord-002994-1zjrunzc	132	5	informative	informative	ADJ
cord-002994-1zjrunzc	132	6	sites	site	NOUN
cord-002994-1zjrunzc	132	7	iega	iega	ADJ
cord-002994-1zjrunzc	132	8	and	and	CCONJ
cord-002994-1zjrunzc	132	9	griwna	griwna	NOUN
cord-002994-1zjrunzc	132	10	identified	identify	VERB
cord-002994-1zjrunzc	132	11	in	in	ADP
cord-002994-1zjrunzc	132	12	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	132	13	and	and	CCONJ
cord-002994-1zjrunzc	132	14	ns5	ns5	PROPN
cord-002994-1zjrunzc	132	15	,	,	PUNCT
cord-002994-1zjrunzc	132	16	showed	show	VERB
cord-002994-1zjrunzc	132	17	combined	combine	VERB
cord-002994-1zjrunzc	132	18	variations	variation	NOUN
cord-002994-1zjrunzc	132	19	in	in	ADP
cord-002994-1zjrunzc	132	20	the	the	DET
cord-002994-1zjrunzc	132	21	genome	genome	NOUN
cord-002994-1zjrunzc	132	22	of	of	ADP
cord-002994-1zjrunzc	132	23	the	the	DET
cord-002994-1zjrunzc	132	24	car	car	NOUN
cord-002994-1zjrunzc	132	25	isolate	isolate	NOUN
cord-002994-1zjrunzc	132	26	(	(	PUNCT
cord-002994-1zjrunzc	132	27	dkgq	dkgq	PROPN
cord-002994-1zjrunzc	132	28	and	and	CCONJ
cord-002994-1zjrunzc	132	29	rtdmec	rtdmec	X
cord-002994-1zjrunzc	132	30	,	,	PUNCT
cord-002994-1zjrunzc	132	31	respectively	respectively	ADV
cord-002994-1zjrunzc	132	32	)	)	PUNCT
cord-002994-1zjrunzc	132	33	and	and	CCONJ
cord-002994-1zjrunzc	132	34	the	the	DET
cord-002994-1zjrunzc	132	35	senegalese	senegalese	PROPN
cord-002994-1zjrunzc	132	36	bagv	bagv	PROPN
cord-002994-1zjrunzc	132	37	isolates	isolate	VERB
cord-002994-1zjrunzc	132	38	ard152146_diawara_sen_2001	ard152146_diawara_sen_2001	ADJ
cord-002994-1zjrunzc	132	39	(	(	PUNCT
cord-002994-1zjrunzc	132	40	rraa	rraa	NOUN
cord-002994-1zjrunzc	132	41	and	and	CCONJ
cord-002994-1zjrunzc	132	42	griwna	griwna	NOUN
cord-002994-1zjrunzc	132	43	,	,	PUNCT
cord-002994-1zjrunzc	132	44	respectively	respectively	ADV
cord-002994-1zjrunzc	132	45	)	)	PUNCT
cord-002994-1zjrunzc	132	46	and	and	CCONJ
cord-002994-1zjrunzc	132	47	ard260266_barkedji_sen_2014	ard260266_barkedji_sen_2014	PROPN
cord-002994-1zjrunzc	132	48	(	(	PUNCT
cord-002994-1zjrunzc	132	49	rrss	rrss	NOUN
cord-002994-1zjrunzc	132	50	and	and	CCONJ
cord-002994-1zjrunzc	132	51	rtdmec	rtdmec	X
cord-002994-1zjrunzc	132	52	,	,	PUNCT
cord-002994-1zjrunzc	132	53	respectively	respectively	ADV
cord-002994-1zjrunzc	132	54	)	)	PUNCT
cord-002994-1zjrunzc	132	55	(	(	PUNCT
cord-002994-1zjrunzc	132	56	figure	figure	NOUN
cord-002994-1zjrunzc	132	57	2	2	NUM
cord-002994-1zjrunzc	132	58	)	)	PUNCT
cord-002994-1zjrunzc	132	59	.	.	PUNCT
cord-002994-1zjrunzc	133	1	non	non	ADJ
cord-002994-1zjrunzc	133	2	-	-	ADJ
cord-002994-1zjrunzc	133	3	conservative	conservative	ADJ
cord-002994-1zjrunzc	133	4	amino	amino	NOUN
cord-002994-1zjrunzc	133	5	acid	acid	NOUN
cord-002994-1zjrunzc	133	6	mutations	mutation	NOUN
cord-002994-1zjrunzc	133	7	on	on	ADP
cord-002994-1zjrunzc	133	8	the	the	DET
cord-002994-1zjrunzc	133	9	bagv	bagv	NOUN
cord-002994-1zjrunzc	133	10	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	133	11	might	might	AUX
cord-002994-1zjrunzc	133	12	be	be	AUX
cord-002994-1zjrunzc	133	13	associated	associate	VERB
cord-002994-1zjrunzc	133	14	to	to	ADP
cord-002994-1zjrunzc	133	15	phenotypic	phenotypic	ADJ
cord-002994-1zjrunzc	133	16	differences	difference	NOUN
cord-002994-1zjrunzc	133	17	of	of	ADP
cord-002994-1zjrunzc	133	18	bagv	bagv	NOUN
cord-002994-1zjrunzc	133	19	isolates	isolate	NOUN
cord-002994-1zjrunzc	133	20	.	.	PUNCT
cord-002994-1zjrunzc	134	1	in	in	ADP
cord-002994-1zjrunzc	134	2	addition	addition	NOUN
cord-002994-1zjrunzc	134	3	,	,	PUNCT
cord-002994-1zjrunzc	134	4	the	the	DET
cord-002994-1zjrunzc	134	5	presence	presence	NOUN
cord-002994-1zjrunzc	134	6	of	of	ADP
cord-002994-1zjrunzc	134	7	phylogenetically	phylogenetically	ADV
cord-002994-1zjrunzc	134	8	informative	informative	ADJ
cord-002994-1zjrunzc	134	9	sites	site	NOUN
cord-002994-1zjrunzc	134	10	was	be	AUX
cord-002994-1zjrunzc	134	11	assessed	assess	VERB
cord-002994-1zjrunzc	134	12	on	on	ADP
cord-002994-1zjrunzc	134	13	the	the	DET
cord-002994-1zjrunzc	134	14	divein	divein	PROPN
cord-002994-1zjrunzc	134	15	web	web	PROPN
cord-002994-1zjrunzc	134	16	server	server	NOUN
cord-002994-1zjrunzc	134	17	.	.	PUNCT
cord-002994-1zjrunzc	135	1	the	the	DET
cord-002994-1zjrunzc	135	2	identified	identify	VERB
cord-002994-1zjrunzc	135	3	site	site	NOUN
cord-002994-1zjrunzc	135	4	lap	lap	NOUN
cord-002994-1zjrunzc	135	5	is	be	AUX
cord-002994-1zjrunzc	135	6	harbored	harbor	VERB
cord-002994-1zjrunzc	135	7	by	by	ADP
cord-002994-1zjrunzc	135	8	the	the	DET
cord-002994-1zjrunzc	135	9	conserved	conserved	ADJ
cord-002994-1zjrunzc	135	10	motif	motif	NOUN
cord-002994-1zjrunzc	135	11	laptrvv	laptrvv	X
cord-002994-1zjrunzc	135	12	previously	previously	ADV
cord-002994-1zjrunzc	135	13	identified	identify	VERB
cord-002994-1zjrunzc	135	14	in	in	ADP
cord-002994-1zjrunzc	135	15	ns3	ns3	ADJ
cord-002994-1zjrunzc	135	16	protein	protein	NOUN
cord-002994-1zjrunzc	135	17	of	of	ADP
cord-002994-1zjrunzc	135	18	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	135	19	[	[	X
cord-002994-1zjrunzc	135	20	3	3	NUM
cord-002994-1zjrunzc	135	21	]	]	PUNCT
cord-002994-1zjrunzc	135	22	and	and	CCONJ
cord-002994-1zjrunzc	135	23	presents	present	VERB
cord-002994-1zjrunzc	135	24	nc	nc	PROPN
cord-002994-1zjrunzc	135	25	mutations	mutation	NOUN
cord-002994-1zjrunzc	135	26	in	in	ADP
cord-002994-1zjrunzc	135	27	the	the	DET
cord-002994-1zjrunzc	135	28	genome	genome	NOUN
cord-002994-1zjrunzc	135	29	of	of	ADP
cord-002994-1zjrunzc	135	30	three	three	NUM
cord-002994-1zjrunzc	135	31	bagv	bagv	NOUN
cord-002994-1zjrunzc	135	32	isolates	isolate	NOUN
cord-002994-1zjrunzc	135	33	.	.	PUNCT
cord-002994-1zjrunzc	136	1	in	in	ADP
cord-002994-1zjrunzc	136	2	addition	addition	NOUN
cord-002994-1zjrunzc	136	3	,	,	PUNCT
cord-002994-1zjrunzc	136	4	phylogenetically	phylogenetically	ADV
cord-002994-1zjrunzc	136	5	informative	informative	ADJ
cord-002994-1zjrunzc	136	6	sites	site	NOUN
cord-002994-1zjrunzc	136	7	iega	iega	ADJ
cord-002994-1zjrunzc	136	8	and	and	CCONJ
cord-002994-1zjrunzc	136	9	griwna	griwna	NOUN
cord-002994-1zjrunzc	136	10	identified	identify	VERB
cord-002994-1zjrunzc	136	11	in	in	ADP
cord-002994-1zjrunzc	136	12	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	136	13	and	and	CCONJ
cord-002994-1zjrunzc	136	14	ns5	ns5	PROPN
cord-002994-1zjrunzc	136	15	,	,	PUNCT
cord-002994-1zjrunzc	136	16	showed	show	VERB
cord-002994-1zjrunzc	136	17	combined	combine	VERB
cord-002994-1zjrunzc	136	18	variations	variation	NOUN
cord-002994-1zjrunzc	136	19	in	in	ADP
cord-002994-1zjrunzc	136	20	the	the	DET
cord-002994-1zjrunzc	136	21	genome	genome	NOUN
cord-002994-1zjrunzc	136	22	of	of	ADP
cord-002994-1zjrunzc	136	23	the	the	DET
cord-002994-1zjrunzc	136	24	car	car	NOUN
cord-002994-1zjrunzc	136	25	isolate	isolate	NOUN
cord-002994-1zjrunzc	136	26	(	(	PUNCT
cord-002994-1zjrunzc	136	27	dkgq	dkgq	PROPN
cord-002994-1zjrunzc	136	28	and	and	CCONJ
cord-002994-1zjrunzc	136	29	rtdmec	rtdmec	X
cord-002994-1zjrunzc	136	30	,	,	PUNCT
cord-002994-1zjrunzc	136	31	respectively	respectively	ADV
cord-002994-1zjrunzc	136	32	)	)	PUNCT
cord-002994-1zjrunzc	136	33	and	and	CCONJ
cord-002994-1zjrunzc	136	34	the	the	DET
cord-002994-1zjrunzc	136	35	senegalese	senegalese	PROPN
cord-002994-1zjrunzc	136	36	bagv	bagv	PROPN
cord-002994-1zjrunzc	136	37	isolates	isolate	VERB
cord-002994-1zjrunzc	136	38	ard152146_diawara_sen_2001	ard152146_diawara_sen_2001	ADJ
cord-002994-1zjrunzc	136	39	(	(	PUNCT
cord-002994-1zjrunzc	136	40	rraa	rraa	NOUN
cord-002994-1zjrunzc	136	41	and	and	CCONJ
cord-002994-1zjrunzc	136	42	griwna	griwna	NOUN
cord-002994-1zjrunzc	136	43	,	,	PUNCT
cord-002994-1zjrunzc	136	44	respectively	respectively	ADV
cord-002994-1zjrunzc	136	45	)	)	PUNCT
cord-002994-1zjrunzc	136	46	and	and	CCONJ
cord-002994-1zjrunzc	136	47	ard260266_barkedji_sen_2014	ard260266_barkedji_sen_2014	PROPN
cord-002994-1zjrunzc	136	48	(	(	PUNCT
cord-002994-1zjrunzc	136	49	rrss	rrss	NOUN
cord-002994-1zjrunzc	136	50	and	and	CCONJ
cord-002994-1zjrunzc	136	51	rtdmec	rtdmec	X
cord-002994-1zjrunzc	136	52	,	,	PUNCT
cord-002994-1zjrunzc	136	53	respectively	respectively	ADV
cord-002994-1zjrunzc	136	54	)	)	PUNCT
cord-002994-1zjrunzc	136	55	(	(	PUNCT
cord-002994-1zjrunzc	136	56	figure	figure	NOUN
cord-002994-1zjrunzc	136	57	2	2	NUM
cord-002994-1zjrunzc	136	58	)	)	PUNCT
cord-002994-1zjrunzc	136	59	.	.	PUNCT
cord-002994-1zjrunzc	137	1	prediction	prediction	NOUN
cord-002994-1zjrunzc	137	2	of	of	ADP
cord-002994-1zjrunzc	137	3	n	n	NOUN
cord-002994-1zjrunzc	137	4	-	-	PUNCT
cord-002994-1zjrunzc	137	5	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	137	6	sites	site	NOUN
cord-002994-1zjrunzc	137	7	was	be	AUX
cord-002994-1zjrunzc	137	8	performed	perform	VERB
cord-002994-1zjrunzc	137	9	using	use	VERB
cord-002994-1zjrunzc	137	10	complete	complete	ADJ
cord-002994-1zjrunzc	137	11	genome	genome	NOUN
cord-002994-1zjrunzc	137	12	sequences	sequence	NOUN
cord-002994-1zjrunzc	137	13	of	of	ADP
cord-002994-1zjrunzc	137	14	the	the	DET
cord-002994-1zjrunzc	137	15	11	11	NUM
cord-002994-1zjrunzc	137	16	west	west	PROPN
cord-002994-1zjrunzc	137	17	african	african	ADJ
cord-002994-1zjrunzc	137	18	bagv	bagv	PROPN
cord-002994-1zjrunzc	137	19	isolates	isolate	VERB
cord-002994-1zjrunzc	137	20	characterized	characterize	VERB
cord-002994-1zjrunzc	137	21	in	in	ADP
cord-002994-1zjrunzc	137	22	this	this	DET
cord-002994-1zjrunzc	137	23	study	study	NOUN
cord-002994-1zjrunzc	137	24	and	and	CCONJ
cord-002994-1zjrunzc	137	25	sequences	sequence	NOUN
cord-002994-1zjrunzc	137	26	from	from	ADP
cord-002994-1zjrunzc	137	27	india	india	PROPN
cord-002994-1zjrunzc	137	28	,	,	PUNCT
cord-002994-1zjrunzc	137	29	car	car	PROPN
cord-002994-1zjrunzc	137	30	and	and	CCONJ
cord-002994-1zjrunzc	137	31	spain	spain	PROPN
cord-002994-1zjrunzc	137	32	on	on	ADP
cord-002994-1zjrunzc	137	33	the	the	DET
cord-002994-1zjrunzc	137	34	divein	divein	PROPN
cord-002994-1zjrunzc	137	35	web	web	PROPN
cord-002994-1zjrunzc	137	36	server	server	NOUN
cord-002994-1zjrunzc	137	37	.	.	PUNCT
cord-002994-1zjrunzc	138	1	the	the	DET
cord-002994-1zjrunzc	138	2	"	"	PUNCT
cord-002994-1zjrunzc	138	3	potential	potential	ADJ
cord-002994-1zjrunzc	138	4	"	"	PUNCT
cord-002994-1zjrunzc	138	5	score	score	NOUN
cord-002994-1zjrunzc	138	6	represents	represent	VERB
cord-002994-1zjrunzc	138	7	the	the	DET
cord-002994-1zjrunzc	138	8	averaged	average	VERB
cord-002994-1zjrunzc	138	9	output	output	NOUN
cord-002994-1zjrunzc	138	10	of	of	ADP
cord-002994-1zjrunzc	138	11	nine	nine	NUM
cord-002994-1zjrunzc	138	12	neural	neural	ADJ
cord-002994-1zjrunzc	138	13	networks	network	NOUN
cord-002994-1zjrunzc	138	14	and	and	CCONJ
cord-002994-1zjrunzc	138	15	the	the	DET
cord-002994-1zjrunzc	138	16	"	"	PUNCT
cord-002994-1zjrunzc	138	17	jury	jury	NOUN
cord-002994-1zjrunzc	138	18	agreement	agreement	NOUN
cord-002994-1zjrunzc	138	19	"	"	PUNCT
cord-002994-1zjrunzc	138	20	indicates	indicate	VERB
cord-002994-1zjrunzc	138	21	how	how	SCONJ
cord-002994-1zjrunzc	138	22	many	many	ADJ
cord-002994-1zjrunzc	138	23	of	of	ADP
cord-002994-1zjrunzc	138	24	the	the	DET
cord-002994-1zjrunzc	138	25	nine	nine	NUM
cord-002994-1zjrunzc	138	26	networks	network	NOUN
cord-002994-1zjrunzc	138	27	support	support	VERB
cord-002994-1zjrunzc	138	28	the	the	DET
cord-002994-1zjrunzc	138	29	prediction	prediction	NOUN
cord-002994-1zjrunzc	138	30	.	.	PUNCT
cord-002994-1zjrunzc	139	1	in	in	ADP
cord-002994-1zjrunzc	139	2	total	total	ADJ
cord-002994-1zjrunzc	139	3	,	,	PUNCT
cord-002994-1zjrunzc	139	4	eight	eight	NUM
cord-002994-1zjrunzc	139	5	n	n	ADJ
cord-002994-1zjrunzc	139	6	-	-	ADJ
cord-002994-1zjrunzc	139	7	glycosylated	glycosylated	ADJ
cord-002994-1zjrunzc	139	8	motifs	motif	NOUN
cord-002994-1zjrunzc	139	9	were	be	AUX
cord-002994-1zjrunzc	139	10	identified	identify	VERB
cord-002994-1zjrunzc	139	11	in	in	ADP
cord-002994-1zjrunzc	139	12	the	the	DET
cord-002994-1zjrunzc	139	13	bagv	bagv	NOUN
cord-002994-1zjrunzc	139	14	genome	genome	NOUN
cord-002994-1zjrunzc	139	15	(	(	PUNCT
cord-002994-1zjrunzc	139	16	potential	potential	ADJ
cord-002994-1zjrunzc	139	17	>	>	PROPN
cord-002994-1zjrunzc	139	18	0.5	0.5	NUM
cord-002994-1zjrunzc	139	19	)	)	PUNCT
cord-002994-1zjrunzc	139	20	including	include	VERB
cord-002994-1zjrunzc	139	21	two	two	NUM
cord-002994-1zjrunzc	139	22	highly	highly	ADV
cord-002994-1zjrunzc	139	23	probable	probable	ADJ
cord-002994-1zjrunzc	139	24	sites	site	NOUN
cord-002994-1zjrunzc	139	25	(	(	PUNCT
cord-002994-1zjrunzc	139	26	potential	potential	ADJ
cord-002994-1zjrunzc	139	27	>	>	PROPN
cord-002994-1zjrunzc	139	28	0.5	0.5	NUM
cord-002994-1zjrunzc	139	29	and	and	CCONJ
cord-002994-1zjrunzc	139	30	jury	jury	NOUN
cord-002994-1zjrunzc	139	31	agreement	agreement	NOUN
cord-002994-1zjrunzc	139	32	of	of	ADP
cord-002994-1zjrunzc	139	33	9/9	9/9	NUM
cord-002994-1zjrunzc	139	34	)	)	PUNCT
cord-002994-1zjrunzc	139	35	.	.	PUNCT
cord-002994-1zjrunzc	140	1	despite	despite	SCONJ
cord-002994-1zjrunzc	140	2	high	high	ADJ
cord-002994-1zjrunzc	140	3	potential	potential	NOUN
cord-002994-1zjrunzc	140	4	(	(	PUNCT
cord-002994-1zjrunzc	140	5	0.7452	0.7452	NUM
cord-002994-1zjrunzc	140	6	)	)	PUNCT
cord-002994-1zjrunzc	140	7	and	and	CCONJ
cord-002994-1zjrunzc	140	8	jury	jury	NOUN
cord-002994-1zjrunzc	140	9	agreement	agreement	NOUN
cord-002994-1zjrunzc	140	10	(	(	PUNCT
cord-002994-1zjrunzc	140	11	9/9	9/9	NUM
cord-002994-1zjrunzc	140	12	)	)	PUNCT
cord-002994-1zjrunzc	140	13	,	,	PUNCT
cord-002994-1zjrunzc	140	14	the	the	DET
cord-002994-1zjrunzc	140	15	motif	motif	NOUN
cord-002994-1zjrunzc	140	16	(	(	PUNCT
cord-002994-1zjrunzc	140	17	asn	asn	PROPN
cord-002994-1zjrunzc	140	18	-	-	PUNCT
cord-002994-1zjrunzc	140	19	x	x	PROPN
cord-002994-1zjrunzc	140	20	-	-	NOUN
cord-002994-1zjrunzc	140	21	thr	thr	PROPN
cord-002994-1zjrunzc	140	22	)	)	PUNCT
cord-002994-1zjrunzc	140	23	nptd	nptd	PROPN
cord-002994-1zjrunzc	140	24	identified	identify	VERB
cord-002994-1zjrunzc	140	25	at	at	ADP
cord-002994-1zjrunzc	140	26	position	position	NOUN
cord-002994-1zjrunzc	140	27	603	603	NUM
cord-002994-1zjrunzc	140	28	was	be	AUX
cord-002994-1zjrunzc	140	29	not	not	PART
cord-002994-1zjrunzc	140	30	considered	consider	VERB
cord-002994-1zjrunzc	140	31	to	to	PART
cord-002994-1zjrunzc	140	32	be	be	AUX
cord-002994-1zjrunzc	140	33	glycosylated	glycosylate	VERB
cord-002994-1zjrunzc	140	34	because	because	SCONJ
cord-002994-1zjrunzc	140	35	it	it	PRON
cord-002994-1zjrunzc	140	36	contained	contain	VERB
cord-002994-1zjrunzc	140	37	a	a	DET
cord-002994-1zjrunzc	140	38	proline	proline	NOUN
cord-002994-1zjrunzc	140	39	known	know	VERB
cord-002994-1zjrunzc	140	40	to	to	PART
cord-002994-1zjrunzc	140	41	preclude	preclude	VERB
cord-002994-1zjrunzc	140	42	the	the	DET
cord-002994-1zjrunzc	140	43	n	n	NOUN
cord-002994-1zjrunzc	140	44	-	-	NOUN
cord-002994-1zjrunzc	140	45	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	140	46	by	by	ADP
cord-002994-1zjrunzc	140	47	rendering	render	VERB
cord-002994-1zjrunzc	140	48	inaccessible	inaccessible	ADJ
cord-002994-1zjrunzc	140	49	the	the	DET
cord-002994-1zjrunzc	140	50	asparagine	asparagine	NOUN
cord-002994-1zjrunzc	140	51	in	in	ADP
cord-002994-1zjrunzc	140	52	the	the	DET
cord-002994-1zjrunzc	140	53	majority	majority	NOUN
cord-002994-1zjrunzc	140	54	of	of	ADP
cord-002994-1zjrunzc	140	55	cases	case	NOUN
cord-002994-1zjrunzc	140	56	(	(	PUNCT
cord-002994-1zjrunzc	140	57	figure	figure	NOUN
cord-002994-1zjrunzc	140	58	3	3	NUM
cord-002994-1zjrunzc	140	59	)	)	PUNCT
cord-002994-1zjrunzc	140	60	.	.	PUNCT
cord-002994-1zjrunzc	141	1	this	this	DET
cord-002994-1zjrunzc	141	2	motif	motif	NOUN
cord-002994-1zjrunzc	141	3	was	be	AUX
cord-002994-1zjrunzc	141	4	in	in	ADP
cord-002994-1zjrunzc	141	5	the	the	DET
cord-002994-1zjrunzc	141	6	domain	domain	NOUN
cord-002994-1zjrunzc	141	7	iii	iii	NUM
cord-002994-1zjrunzc	141	8	region	region	NOUN
cord-002994-1zjrunzc	141	9	prediction	prediction	NOUN
cord-002994-1zjrunzc	141	10	of	of	ADP
cord-002994-1zjrunzc	141	11	n	n	NOUN
cord-002994-1zjrunzc	141	12	-	-	PUNCT
cord-002994-1zjrunzc	141	13	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	141	14	sites	site	NOUN
cord-002994-1zjrunzc	141	15	was	be	AUX
cord-002994-1zjrunzc	141	16	performed	perform	VERB
cord-002994-1zjrunzc	141	17	using	use	VERB
cord-002994-1zjrunzc	141	18	complete	complete	ADJ
cord-002994-1zjrunzc	141	19	genome	genome	NOUN
cord-002994-1zjrunzc	141	20	sequences	sequence	NOUN
cord-002994-1zjrunzc	141	21	of	of	ADP
cord-002994-1zjrunzc	141	22	the	the	DET
cord-002994-1zjrunzc	141	23	11	11	NUM
cord-002994-1zjrunzc	141	24	west	west	PROPN
cord-002994-1zjrunzc	141	25	african	african	ADJ
cord-002994-1zjrunzc	141	26	bagv	bagv	PROPN
cord-002994-1zjrunzc	141	27	isolates	isolate	VERB
cord-002994-1zjrunzc	141	28	characterized	characterize	VERB
cord-002994-1zjrunzc	141	29	in	in	ADP
cord-002994-1zjrunzc	141	30	this	this	DET
cord-002994-1zjrunzc	141	31	study	study	NOUN
cord-002994-1zjrunzc	141	32	and	and	CCONJ
cord-002994-1zjrunzc	141	33	sequences	sequence	NOUN
cord-002994-1zjrunzc	141	34	from	from	ADP
cord-002994-1zjrunzc	141	35	india	india	PROPN
cord-002994-1zjrunzc	141	36	,	,	PUNCT
cord-002994-1zjrunzc	141	37	car	car	PROPN
cord-002994-1zjrunzc	141	38	and	and	CCONJ
cord-002994-1zjrunzc	141	39	spain	spain	PROPN
cord-002994-1zjrunzc	141	40	on	on	ADP
cord-002994-1zjrunzc	141	41	the	the	DET
cord-002994-1zjrunzc	141	42	divein	divein	PROPN
cord-002994-1zjrunzc	141	43	web	web	PROPN
cord-002994-1zjrunzc	141	44	server	server	NOUN
cord-002994-1zjrunzc	141	45	.	.	PUNCT
cord-002994-1zjrunzc	142	1	the	the	DET
cord-002994-1zjrunzc	142	2	"	"	PUNCT
cord-002994-1zjrunzc	142	3	potential	potential	ADJ
cord-002994-1zjrunzc	142	4	"	"	PUNCT
cord-002994-1zjrunzc	142	5	score	score	NOUN
cord-002994-1zjrunzc	142	6	represents	represent	VERB
cord-002994-1zjrunzc	142	7	the	the	DET
cord-002994-1zjrunzc	142	8	averaged	average	VERB
cord-002994-1zjrunzc	142	9	output	output	NOUN
cord-002994-1zjrunzc	142	10	of	of	ADP
cord-002994-1zjrunzc	142	11	nine	nine	NUM
cord-002994-1zjrunzc	142	12	neural	neural	ADJ
cord-002994-1zjrunzc	142	13	networks	network	NOUN
cord-002994-1zjrunzc	142	14	and	and	CCONJ
cord-002994-1zjrunzc	142	15	the	the	DET
cord-002994-1zjrunzc	142	16	"	"	PUNCT
cord-002994-1zjrunzc	142	17	jury	jury	NOUN
cord-002994-1zjrunzc	142	18	agreement	agreement	NOUN
cord-002994-1zjrunzc	142	19	"	"	PUNCT
cord-002994-1zjrunzc	142	20	indicates	indicate	VERB
cord-002994-1zjrunzc	142	21	how	how	SCONJ
cord-002994-1zjrunzc	142	22	many	many	ADJ
cord-002994-1zjrunzc	142	23	of	of	ADP
cord-002994-1zjrunzc	142	24	the	the	DET
cord-002994-1zjrunzc	142	25	nine	nine	NUM
cord-002994-1zjrunzc	142	26	networks	network	NOUN
cord-002994-1zjrunzc	142	27	support	support	VERB
cord-002994-1zjrunzc	142	28	the	the	DET
cord-002994-1zjrunzc	142	29	prediction	prediction	NOUN
cord-002994-1zjrunzc	142	30	.	.	PUNCT
cord-002994-1zjrunzc	143	1	in	in	ADP
cord-002994-1zjrunzc	143	2	total	total	ADJ
cord-002994-1zjrunzc	143	3	,	,	PUNCT
cord-002994-1zjrunzc	143	4	eight	eight	NUM
cord-002994-1zjrunzc	143	5	n	n	ADJ
cord-002994-1zjrunzc	143	6	-	-	ADJ
cord-002994-1zjrunzc	143	7	glycosylated	glycosylated	ADJ
cord-002994-1zjrunzc	143	8	motifs	motif	NOUN
cord-002994-1zjrunzc	143	9	were	be	AUX
cord-002994-1zjrunzc	143	10	identified	identify	VERB
cord-002994-1zjrunzc	143	11	in	in	ADP
cord-002994-1zjrunzc	143	12	the	the	DET
cord-002994-1zjrunzc	143	13	bagv	bagv	NOUN
cord-002994-1zjrunzc	143	14	genome	genome	NOUN
cord-002994-1zjrunzc	143	15	(	(	PUNCT
cord-002994-1zjrunzc	143	16	potential	potential	ADJ
cord-002994-1zjrunzc	143	17	>	>	PROPN
cord-002994-1zjrunzc	143	18	0.5	0.5	NUM
cord-002994-1zjrunzc	143	19	)	)	PUNCT
cord-002994-1zjrunzc	143	20	including	include	VERB
cord-002994-1zjrunzc	143	21	two	two	NUM
cord-002994-1zjrunzc	143	22	highly	highly	ADV
cord-002994-1zjrunzc	143	23	probable	probable	ADJ
cord-002994-1zjrunzc	143	24	sites	site	NOUN
cord-002994-1zjrunzc	143	25	(	(	PUNCT
cord-002994-1zjrunzc	143	26	potential	potential	ADJ
cord-002994-1zjrunzc	143	27	>	>	PROPN
cord-002994-1zjrunzc	143	28	0.5	0.5	NUM
cord-002994-1zjrunzc	143	29	and	and	CCONJ
cord-002994-1zjrunzc	143	30	jury	jury	NOUN
cord-002994-1zjrunzc	143	31	agreement	agreement	NOUN
cord-002994-1zjrunzc	143	32	of	of	ADP
cord-002994-1zjrunzc	143	33	9/9	9/9	NUM
cord-002994-1zjrunzc	143	34	)	)	PUNCT
cord-002994-1zjrunzc	143	35	.	.	PUNCT
cord-002994-1zjrunzc	144	1	despite	despite	SCONJ
cord-002994-1zjrunzc	144	2	high	high	ADJ
cord-002994-1zjrunzc	144	3	potential	potential	NOUN
cord-002994-1zjrunzc	144	4	(	(	PUNCT
cord-002994-1zjrunzc	144	5	0.7452	0.7452	NUM
cord-002994-1zjrunzc	144	6	)	)	PUNCT
cord-002994-1zjrunzc	144	7	and	and	CCONJ
cord-002994-1zjrunzc	144	8	jury	jury	NOUN
cord-002994-1zjrunzc	144	9	agreement	agreement	NOUN
cord-002994-1zjrunzc	144	10	(	(	PUNCT
cord-002994-1zjrunzc	144	11	9/9	9/9	NUM
cord-002994-1zjrunzc	144	12	)	)	PUNCT
cord-002994-1zjrunzc	144	13	,	,	PUNCT
cord-002994-1zjrunzc	144	14	the	the	DET
cord-002994-1zjrunzc	144	15	motif	motif	NOUN
cord-002994-1zjrunzc	144	16	(	(	PUNCT
cord-002994-1zjrunzc	144	17	asn	asn	PROPN
cord-002994-1zjrunzc	144	18	-	-	PUNCT
cord-002994-1zjrunzc	144	19	x	x	PROPN
cord-002994-1zjrunzc	144	20	-	-	NOUN
cord-002994-1zjrunzc	144	21	thr	thr	PROPN
cord-002994-1zjrunzc	144	22	)	)	PUNCT
cord-002994-1zjrunzc	144	23	nptd	nptd	PROPN
cord-002994-1zjrunzc	144	24	identified	identify	VERB
cord-002994-1zjrunzc	144	25	at	at	ADP
cord-002994-1zjrunzc	144	26	position	position	NOUN
cord-002994-1zjrunzc	144	27	603	603	NUM
cord-002994-1zjrunzc	144	28	was	be	AUX
cord-002994-1zjrunzc	144	29	not	not	PART
cord-002994-1zjrunzc	144	30	considered	consider	VERB
cord-002994-1zjrunzc	144	31	to	to	PART
cord-002994-1zjrunzc	144	32	be	be	AUX
cord-002994-1zjrunzc	144	33	glycosylated	glycosylate	VERB
cord-002994-1zjrunzc	144	34	because	because	SCONJ
cord-002994-1zjrunzc	144	35	it	it	PRON
cord-002994-1zjrunzc	144	36	contained	contain	VERB
cord-002994-1zjrunzc	144	37	a	a	DET
cord-002994-1zjrunzc	144	38	proline	proline	NOUN
cord-002994-1zjrunzc	144	39	known	know	VERB
cord-002994-1zjrunzc	144	40	to	to	PART
cord-002994-1zjrunzc	144	41	preclude	preclude	VERB
cord-002994-1zjrunzc	144	42	the	the	DET
cord-002994-1zjrunzc	144	43	n	n	NOUN
cord-002994-1zjrunzc	144	44	-	-	NOUN
cord-002994-1zjrunzc	144	45	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	144	46	by	by	ADP
cord-002994-1zjrunzc	144	47	rendering	render	VERB
cord-002994-1zjrunzc	144	48	inaccessible	inaccessible	ADJ
cord-002994-1zjrunzc	144	49	the	the	DET
cord-002994-1zjrunzc	144	50	asparagine	asparagine	NOUN
cord-002994-1zjrunzc	144	51	in	in	ADP
cord-002994-1zjrunzc	144	52	the	the	DET
cord-002994-1zjrunzc	144	53	majority	majority	NOUN
cord-002994-1zjrunzc	144	54	of	of	ADP
cord-002994-1zjrunzc	144	55	cases	case	NOUN
cord-002994-1zjrunzc	144	56	(	(	PUNCT
cord-002994-1zjrunzc	144	57	figure	figure	NOUN
cord-002994-1zjrunzc	144	58	3	3	NUM
cord-002994-1zjrunzc	144	59	)	)	PUNCT
cord-002994-1zjrunzc	144	60	.	.	PUNCT
cord-002994-1zjrunzc	145	1	this	this	DET
cord-002994-1zjrunzc	145	2	motif	motif	NOUN
cord-002994-1zjrunzc	145	3	was	be	AUX
cord-002994-1zjrunzc	145	4	in	in	ADP
cord-002994-1zjrunzc	145	5	the	the	DET
cord-002994-1zjrunzc	145	6	domain	domain	NOUN
cord-002994-1zjrunzc	145	7	iii	iii	NUM
cord-002994-1zjrunzc	145	8	region	region	NOUN
cord-002994-1zjrunzc	145	9	of	of	ADP
cord-002994-1zjrunzc	145	10	the	the	DET
cord-002994-1zjrunzc	145	11	e	e	NOUN
cord-002994-1zjrunzc	145	12	protein	protein	NOUN
cord-002994-1zjrunzc	145	13	of	of	ADP
cord-002994-1zjrunzc	145	14	all	all	DET
cord-002994-1zjrunzc	145	15	bagv	bagv	NOUN
cord-002994-1zjrunzc	145	16	isolates	isolate	NOUN
cord-002994-1zjrunzc	145	17	.	.	PUNCT
cord-002994-1zjrunzc	146	1	however	however	ADV
cord-002994-1zjrunzc	146	2	,	,	PUNCT
cord-002994-1zjrunzc	146	3	a	a	DET
cord-002994-1zjrunzc	146	4	second	second	ADJ
cord-002994-1zjrunzc	146	5	(	(	PUNCT
cord-002994-1zjrunzc	146	6	asn	asn	PROPN
cord-002994-1zjrunzc	146	7	-	-	PUNCT
cord-002994-1zjrunzc	146	8	x	x	PROPN
cord-002994-1zjrunzc	146	9	-	-	NOUN
cord-002994-1zjrunzc	146	10	ser	ser	PROPN
cord-002994-1zjrunzc	146	11	)	)	PUNCT
cord-002994-1zjrunzc	146	12	motif	motif	PROPN
cord-002994-1zjrunzc	146	13	nfsl	nfsl	PROPN
cord-002994-1zjrunzc	146	14	was	be	AUX
cord-002994-1zjrunzc	146	15	highly	highly	ADV
cord-002994-1zjrunzc	146	16	predicted	predict	VERB
cord-002994-1zjrunzc	146	17	(	(	PUNCT
cord-002994-1zjrunzc	146	18	score	score	NOUN
cord-002994-1zjrunzc	146	19	0.6223	0.6223	NUM
cord-002994-1zjrunzc	146	20	(	(	PUNCT
cord-002994-1zjrunzc	146	21	9/9	9/9	NUM
cord-002994-1zjrunzc	146	22	)	)	PUNCT
cord-002994-1zjrunzc	146	23	)	)	PUNCT
cord-002994-1zjrunzc	146	24	and	and	CCONJ
cord-002994-1zjrunzc	146	25	suggested	suggest	VERB
cord-002994-1zjrunzc	146	26	an	an	DET
cord-002994-1zjrunzc	146	27	n	n	ADV
cord-002994-1zjrunzc	146	28	-	-	PUNCT
cord-002994-1zjrunzc	146	29	linked	link	VERB
cord-002994-1zjrunzc	146	30	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	146	31	site	site	NOUN
cord-002994-1zjrunzc	146	32	at	at	ADP
cord-002994-1zjrunzc	146	33	the	the	DET
cord-002994-1zjrunzc	146	34	residue	residue	ADJ
cord-002994-1zjrunzc	146	35	asn-2333	asn-2333	NOUN
cord-002994-1zjrunzc	146	36	in	in	ADP
cord-002994-1zjrunzc	146	37	the	the	DET
cord-002994-1zjrunzc	146	38	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	146	39	protein	protein	NOUN
cord-002994-1zjrunzc	146	40	.	.	PUNCT
cord-002994-1zjrunzc	147	1	interestingly	interestingly	ADV
cord-002994-1zjrunzc	147	2	,	,	PUNCT
cord-002994-1zjrunzc	147	3	we	we	PRON
cord-002994-1zjrunzc	147	4	also	also	ADV
cord-002994-1zjrunzc	147	5	found	find	VERB
cord-002994-1zjrunzc	147	6	six	six	NUM
cord-002994-1zjrunzc	147	7	others	other	NOUN
cord-002994-1zjrunzc	147	8	probable	probable	ADJ
cord-002994-1zjrunzc	147	9	n	n	NOUN
cord-002994-1zjrunzc	147	10	-	-	NOUN
cord-002994-1zjrunzc	147	11	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	147	12	at	at	ADP
cord-002994-1zjrunzc	147	13	different	different	ADJ
cord-002994-1zjrunzc	147	14	positions	position	NOUN
cord-002994-1zjrunzc	147	15	on	on	ADP
cord-002994-1zjrunzc	147	16	the	the	DET
cord-002994-1zjrunzc	147	17	bagv	bagv	NOUN
cord-002994-1zjrunzc	147	18	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	147	19	including	include	VERB
cord-002994-1zjrunzc	147	20	one	one	NUM
cord-002994-1zjrunzc	147	21	site	site	NOUN
cord-002994-1zjrunzc	147	22	(	(	PUNCT
cord-002994-1zjrunzc	147	23	nysi	nysi	NOUN
cord-002994-1zjrunzc	147	24	)	)	PUNCT
cord-002994-1zjrunzc	147	25	harboring	harboring	NOUN
cord-002994-1zjrunzc	147	26	,	,	PUNCT
cord-002994-1zjrunzc	147	27	the	the	DET
cord-002994-1zjrunzc	147	28	nys	nys	PROPN
cord-002994-1zjrunzc	147	29	motif	motif	NOUN
cord-002994-1zjrunzc	147	30	at	at	ADP
cord-002994-1zjrunzc	147	31	the	the	DET
cord-002994-1zjrunzc	147	32	443th	443th	NUM
cord-002994-1zjrunzc	147	33	position	position	NOUN
cord-002994-1zjrunzc	147	34	(	(	PUNCT
cord-002994-1zjrunzc	147	35	153th	153th	PROPN
cord-002994-1zjrunzc	147	36	position	position	NOUN
cord-002994-1zjrunzc	147	37	of	of	ADP
cord-002994-1zjrunzc	147	38	the	the	DET
cord-002994-1zjrunzc	147	39	e	e	NOUN
cord-002994-1zjrunzc	147	40	protein	protein	NOUN
cord-002994-1zjrunzc	147	41	)	)	PUNCT
cord-002994-1zjrunzc	147	42	,	,	PUNCT
cord-002994-1zjrunzc	147	43	previously	previously	ADV
cord-002994-1zjrunzc	147	44	described	describe	VERB
cord-002994-1zjrunzc	147	45	as	as	ADP
cord-002994-1zjrunzc	147	46	a	a	DET
cord-002994-1zjrunzc	147	47	virulence	virulence	NOUN
cord-002994-1zjrunzc	147	48	factor	factor	NOUN
cord-002994-1zjrunzc	147	49	for	for	ADP
cord-002994-1zjrunzc	147	50	wnv	wnv	NOUN
cord-002994-1zjrunzc	147	51	and	and	CCONJ
cord-002994-1zjrunzc	147	52	denv	denv	NOUN
cord-002994-1zjrunzc	147	53	.	.	PUNCT
cord-002994-1zjrunzc	148	1	of	of	ADP
cord-002994-1zjrunzc	148	2	the	the	DET
cord-002994-1zjrunzc	148	3	e	e	NOUN
cord-002994-1zjrunzc	148	4	protein	protein	NOUN
cord-002994-1zjrunzc	148	5	of	of	ADP
cord-002994-1zjrunzc	148	6	all	all	DET
cord-002994-1zjrunzc	148	7	bagv	bagv	NOUN
cord-002994-1zjrunzc	148	8	isolates	isolate	NOUN
cord-002994-1zjrunzc	148	9	.	.	PUNCT
cord-002994-1zjrunzc	149	1	however	however	ADV
cord-002994-1zjrunzc	149	2	,	,	PUNCT
cord-002994-1zjrunzc	149	3	a	a	DET
cord-002994-1zjrunzc	149	4	second	second	ADJ
cord-002994-1zjrunzc	149	5	(	(	PUNCT
cord-002994-1zjrunzc	149	6	asn	asn	PROPN
cord-002994-1zjrunzc	149	7	-	-	PUNCT
cord-002994-1zjrunzc	149	8	x	x	PROPN
cord-002994-1zjrunzc	149	9	-	-	NOUN
cord-002994-1zjrunzc	149	10	ser	ser	PROPN
cord-002994-1zjrunzc	149	11	)	)	PUNCT
cord-002994-1zjrunzc	149	12	motif	motif	PROPN
cord-002994-1zjrunzc	149	13	nfsl	nfsl	PROPN
cord-002994-1zjrunzc	149	14	was	be	AUX
cord-002994-1zjrunzc	149	15	highly	highly	ADV
cord-002994-1zjrunzc	149	16	predicted	predict	VERB
cord-002994-1zjrunzc	149	17	(	(	PUNCT
cord-002994-1zjrunzc	149	18	score	score	NOUN
cord-002994-1zjrunzc	149	19	0.6223	0.6223	NUM
cord-002994-1zjrunzc	149	20	(	(	PUNCT
cord-002994-1zjrunzc	149	21	9/9	9/9	NUM
cord-002994-1zjrunzc	149	22	)	)	PUNCT
cord-002994-1zjrunzc	149	23	)	)	PUNCT
cord-002994-1zjrunzc	149	24	and	and	CCONJ
cord-002994-1zjrunzc	149	25	suggested	suggest	VERB
cord-002994-1zjrunzc	149	26	an	an	DET
cord-002994-1zjrunzc	149	27	n	n	ADV
cord-002994-1zjrunzc	149	28	-	-	PUNCT
cord-002994-1zjrunzc	149	29	linked	link	VERB
cord-002994-1zjrunzc	149	30	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	149	31	site	site	NOUN
cord-002994-1zjrunzc	149	32	at	at	ADP
cord-002994-1zjrunzc	149	33	the	the	DET
cord-002994-1zjrunzc	149	34	residue	residue	ADJ
cord-002994-1zjrunzc	149	35	asn-2333	asn-2333	NOUN
cord-002994-1zjrunzc	149	36	in	in	ADP
cord-002994-1zjrunzc	149	37	the	the	DET
cord-002994-1zjrunzc	149	38	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	149	39	protein	protein	NOUN
cord-002994-1zjrunzc	149	40	.	.	PUNCT
cord-002994-1zjrunzc	150	1	interestingly	interestingly	ADV
cord-002994-1zjrunzc	150	2	,	,	PUNCT
cord-002994-1zjrunzc	150	3	we	we	PRON
cord-002994-1zjrunzc	150	4	also	also	ADV
cord-002994-1zjrunzc	150	5	found	find	VERB
cord-002994-1zjrunzc	150	6	six	six	NUM
cord-002994-1zjrunzc	150	7	others	other	NOUN
cord-002994-1zjrunzc	150	8	probable	probable	ADJ
cord-002994-1zjrunzc	150	9	n	n	NOUN
cord-002994-1zjrunzc	150	10	-	-	NOUN
cord-002994-1zjrunzc	150	11	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	150	12	at	at	ADP
cord-002994-1zjrunzc	150	13	different	different	ADJ
cord-002994-1zjrunzc	150	14	positions	position	NOUN
cord-002994-1zjrunzc	150	15	on	on	ADP
cord-002994-1zjrunzc	150	16	the	the	DET
cord-002994-1zjrunzc	150	17	bagv	bagv	NOUN
cord-002994-1zjrunzc	150	18	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	150	19	including	include	VERB
cord-002994-1zjrunzc	150	20	one	one	NUM
cord-002994-1zjrunzc	150	21	site	site	NOUN
cord-002994-1zjrunzc	150	22	(	(	PUNCT
cord-002994-1zjrunzc	150	23	nysi	nysi	NOUN
cord-002994-1zjrunzc	150	24	)	)	PUNCT
cord-002994-1zjrunzc	150	25	harboring	harboring	NOUN
cord-002994-1zjrunzc	150	26	,	,	PUNCT
cord-002994-1zjrunzc	150	27	the	the	DET
cord-002994-1zjrunzc	150	28	nys	nys	PROPN
cord-002994-1zjrunzc	150	29	motif	motif	NOUN
cord-002994-1zjrunzc	150	30	at	at	ADP
cord-002994-1zjrunzc	150	31	the	the	DET
cord-002994-1zjrunzc	150	32	443th	443th	NUM
cord-002994-1zjrunzc	150	33	position	position	NOUN
cord-002994-1zjrunzc	150	34	(	(	PUNCT
cord-002994-1zjrunzc	150	35	153th	153th	PROPN
cord-002994-1zjrunzc	150	36	position	position	NOUN
cord-002994-1zjrunzc	150	37	of	of	ADP
cord-002994-1zjrunzc	150	38	the	the	DET
cord-002994-1zjrunzc	150	39	e	e	NOUN
cord-002994-1zjrunzc	150	40	protein	protein	NOUN
cord-002994-1zjrunzc	150	41	)	)	PUNCT
cord-002994-1zjrunzc	150	42	,	,	PUNCT
cord-002994-1zjrunzc	150	43	previously	previously	ADV
cord-002994-1zjrunzc	150	44	described	describe	VERB
cord-002994-1zjrunzc	150	45	as	as	ADP
cord-002994-1zjrunzc	150	46	a	a	DET
cord-002994-1zjrunzc	150	47	virulence	virulence	NOUN
cord-002994-1zjrunzc	150	48	factor	factor	NOUN
cord-002994-1zjrunzc	150	49	for	for	ADP
cord-002994-1zjrunzc	150	50	wnv	wnv	NOUN
cord-002994-1zjrunzc	150	51	and	and	CCONJ
cord-002994-1zjrunzc	150	52	denv	denv	NOUN
cord-002994-1zjrunzc	150	53	.	.	PUNCT
cord-002994-1zjrunzc	151	1	the	the	DET
cord-002994-1zjrunzc	151	2	"	"	PUNCT
cord-002994-1zjrunzc	151	3	potential	potential	ADJ
cord-002994-1zjrunzc	151	4	"	"	PUNCT
cord-002994-1zjrunzc	151	5	score	score	NOUN
cord-002994-1zjrunzc	151	6	is	be	AUX
cord-002994-1zjrunzc	151	7	the	the	DET
cord-002994-1zjrunzc	151	8	averaged	average	VERB
cord-002994-1zjrunzc	151	9	output	output	NOUN
cord-002994-1zjrunzc	151	10	of	of	ADP
cord-002994-1zjrunzc	151	11	nine	nine	NUM
cord-002994-1zjrunzc	151	12	neural	neural	ADJ
cord-002994-1zjrunzc	151	13	networks	network	NOUN
cord-002994-1zjrunzc	151	14	and	and	CCONJ
cord-002994-1zjrunzc	151	15	the	the	DET
cord-002994-1zjrunzc	151	16	"	"	PUNCT
cord-002994-1zjrunzc	151	17	jury	jury	NOUN
cord-002994-1zjrunzc	151	18	agreement	agreement	NOUN
cord-002994-1zjrunzc	151	19	"	"	PUNCT
cord-002994-1zjrunzc	151	20	indicates	indicate	VERB
cord-002994-1zjrunzc	151	21	how	how	SCONJ
cord-002994-1zjrunzc	151	22	many	many	ADJ
cord-002994-1zjrunzc	151	23	of	of	ADP
cord-002994-1zjrunzc	151	24	the	the	DET
cord-002994-1zjrunzc	151	25	nine	nine	NUM
cord-002994-1zjrunzc	151	26	networks	network	NOUN
cord-002994-1zjrunzc	151	27	support	support	VERB
cord-002994-1zjrunzc	151	28	the	the	DET
cord-002994-1zjrunzc	151	29	prediction	prediction	NOUN
cord-002994-1zjrunzc	151	30	.	.	PUNCT
cord-002994-1zjrunzc	152	1	the	the	DET
cord-002994-1zjrunzc	152	2	n	n	ADJ
cord-002994-1zjrunzc	152	3	-	-	ADJ
cord-002994-1zjrunzc	152	4	glyc	glyc	PROPN
cord-002994-1zjrunzc	152	5	result	result	PROPN
cord-002994-1zjrunzc	152	6	column	column	NOUN
cord-002994-1zjrunzc	152	7	shows	show	VERB
cord-002994-1zjrunzc	152	8	one	one	NUM
cord-002994-1zjrunzc	152	9	of	of	ADP
cord-002994-1zjrunzc	152	10	the	the	DET
cord-002994-1zjrunzc	152	11	following	follow	VERB
cord-002994-1zjrunzc	152	12	outputs	output	NOUN
cord-002994-1zjrunzc	152	13	for	for	ADP
cord-002994-1zjrunzc	152	14	predictions	prediction	NOUN
cord-002994-1zjrunzc	152	15	.	.	PUNCT
cord-002994-1zjrunzc	153	1	nglycosylated	nglycosylated	ADJ
cord-002994-1zjrunzc	153	2	sites	site	NOUN
cord-002994-1zjrunzc	153	3	highly	highly	ADV
cord-002994-1zjrunzc	153	4	predicted	predict	VERB
cord-002994-1zjrunzc	153	5	by	by	ADP
cord-002994-1zjrunzc	153	6	the	the	DET
cord-002994-1zjrunzc	153	7	nine	nine	NUM
cord-002994-1zjrunzc	153	8	networks	network	NOUN
cord-002994-1zjrunzc	153	9	(	(	PUNCT
cord-002994-1zjrunzc	153	10	potential	potential	ADJ
cord-002994-1zjrunzc	153	11	>	>	PROPN
cord-002994-1zjrunzc	153	12	0.5	0.5	NUM
cord-002994-1zjrunzc	153	13	and	and	CCONJ
cord-002994-1zjrunzc	153	14	jury	jury	NOUN
cord-002994-1zjrunzc	153	15	agreement	agreement	NOUN
cord-002994-1zjrunzc	153	16	of	of	ADP
cord-002994-1zjrunzc	153	17	9/9	9/9	NUM
cord-002994-1zjrunzc	153	18	)	)	PUNCT
cord-002994-1zjrunzc	153	19	are	be	AUX
cord-002994-1zjrunzc	153	20	highlighted	highlight	VERB
cord-002994-1zjrunzc	153	21	in	in	ADP
cord-002994-1zjrunzc	153	22	red	red	PROPN
cord-002994-1zjrunzc	153	23	and	and	CCONJ
cord-002994-1zjrunzc	153	24	the	the	DET
cord-002994-1zjrunzc	153	25	site	site	NOUN
cord-002994-1zjrunzc	153	26	previously	previously	ADV
cord-002994-1zjrunzc	153	27	reported	report	VERB
cord-002994-1zjrunzc	153	28	as	as	ADP
cord-002994-1zjrunzc	153	29	virulence	virulence	NOUN
cord-002994-1zjrunzc	153	30	factor	factor	NOUN
cord-002994-1zjrunzc	153	31	on	on	ADP
cord-002994-1zjrunzc	153	32	e	e	NOUN
cord-002994-1zjrunzc	153	33	protein	protein	NOUN
cord-002994-1zjrunzc	153	34	of	of	ADP
cord-002994-1zjrunzc	153	35	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	153	36	is	be	AUX
cord-002994-1zjrunzc	153	37	colored	color	VERB
cord-002994-1zjrunzc	153	38	in	in	ADP
cord-002994-1zjrunzc	153	39	blue	blue	NOUN
cord-002994-1zjrunzc	153	40	.	.	PUNCT
cord-002994-1zjrunzc	154	1	assessment	assessment	NOUN
cord-002994-1zjrunzc	154	2	of	of	ADP
cord-002994-1zjrunzc	154	3	thermodynamically	thermodynamically	ADV
cord-002994-1zjrunzc	154	4	stable	stable	ADJ
cord-002994-1zjrunzc	154	5	and	and	CCONJ
cord-002994-1zjrunzc	154	6	evolutionarily	evolutionarily	ADV
cord-002994-1zjrunzc	154	7	conserved	conserve	VERB
cord-002994-1zjrunzc	154	8	structural	structural	ADJ
cord-002994-1zjrunzc	154	9	rna	rna	PROPN
cord-002994-1zjrunzc	154	10	domains	domain	NOUN
cord-002994-1zjrunzc	154	11	was	be	AUX
cord-002994-1zjrunzc	154	12	performed	perform	VERB
cord-002994-1zjrunzc	154	13	using	use	VERB
cord-002994-1zjrunzc	154	14	complete	complete	ADJ
cord-002994-1zjrunzc	154	15	non	non	ADJ
cord-002994-1zjrunzc	154	16	-	-	ADJ
cord-002994-1zjrunzc	154	17	coding	coding	ADJ
cord-002994-1zjrunzc	154	18	sequences	sequence	NOUN
cord-002994-1zjrunzc	154	19	of	of	ADP
cord-002994-1zjrunzc	154	20	the	the	DET
cord-002994-1zjrunzc	154	21	11	11	NUM
cord-002994-1zjrunzc	154	22	west	west	PROPN
cord-002994-1zjrunzc	154	23	african	african	ADJ
cord-002994-1zjrunzc	154	24	bagv	bagv	PROPN
cord-002994-1zjrunzc	154	25	isolates	isolate	VERB
cord-002994-1zjrunzc	154	26	characterized	characterize	VERB
cord-002994-1zjrunzc	154	27	in	in	ADP
cord-002994-1zjrunzc	154	28	this	this	DET
cord-002994-1zjrunzc	154	29	study	study	NOUN
cord-002994-1zjrunzc	154	30	and	and	CCONJ
cord-002994-1zjrunzc	154	31	the	the	DET
cord-002994-1zjrunzc	154	32	isolate	isolate	NOUN
cord-002994-1zjrunzc	154	33	from	from	ADP
cord-002994-1zjrunzc	154	34	spain	spain	PROPN
cord-002994-1zjrunzc	154	35	.	.	PUNCT
cord-002994-1zjrunzc	155	1	the	the	DET
cord-002994-1zjrunzc	155	2	rnaz	rnaz	PROPN
cord-002994-1zjrunzc	155	3	method	method	NOUN
cord-002994-1zjrunzc	155	4	implemented	implement	VERB
cord-002994-1zjrunzc	155	5	in	in	ADP
cord-002994-1zjrunzc	155	6	the	the	DET
cord-002994-1zjrunzc	155	7	vienna	vienna	PROPN
cord-002994-1zjrunzc	155	8	figure	figure	NOUN
cord-002994-1zjrunzc	155	9	3	3	NUM
cord-002994-1zjrunzc	155	10	.	.	PUNCT
cord-002994-1zjrunzc	156	1	prediction	prediction	NOUN
cord-002994-1zjrunzc	156	2	of	of	ADP
cord-002994-1zjrunzc	156	3	n	n	NOUN
cord-002994-1zjrunzc	156	4	-	-	NOUN
cord-002994-1zjrunzc	156	5	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	156	6	on	on	ADP
cord-002994-1zjrunzc	156	7	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	156	8	virus	virus	PROPN
cord-002994-1zjrunzc	156	9	genome	genome	NOUN
cord-002994-1zjrunzc	156	10	.	.	PUNCT
cord-002994-1zjrunzc	157	1	predictions	prediction	NOUN
cord-002994-1zjrunzc	157	2	were	be	AUX
cord-002994-1zjrunzc	157	3	performed	perform	VERB
cord-002994-1zjrunzc	157	4	using	use	VERB
cord-002994-1zjrunzc	157	5	the	the	DET
cord-002994-1zjrunzc	157	6	netnglyc	netnglyc	PROPN
cord-002994-1zjrunzc	157	7	1.0	1.0	NUM
cord-002994-1zjrunzc	157	8	server	server	NOUN
cord-002994-1zjrunzc	157	9	.	.	PUNCT
cord-002994-1zjrunzc	158	1	a	a	DET
cord-002994-1zjrunzc	158	2	position	position	NOUN
cord-002994-1zjrunzc	158	3	with	with	ADP
cord-002994-1zjrunzc	158	4	a	a	DET
cord-002994-1zjrunzc	158	5	potential	potential	ADJ
cord-002994-1zjrunzc	158	6	(	(	PUNCT
cord-002994-1zjrunzc	158	7	green	green	ADJ
cord-002994-1zjrunzc	158	8	vertical	vertical	ADJ
cord-002994-1zjrunzc	158	9	lines	line	NOUN
cord-002994-1zjrunzc	158	10	)	)	PUNCT
cord-002994-1zjrunzc	158	11	crossing	cross	VERB
cord-002994-1zjrunzc	158	12	the	the	DET
cord-002994-1zjrunzc	158	13	threshold	threshold	NOUN
cord-002994-1zjrunzc	158	14	(	(	PUNCT
cord-002994-1zjrunzc	158	15	horizontal	horizontal	ADJ
cord-002994-1zjrunzc	158	16	red	red	ADJ
cord-002994-1zjrunzc	158	17	line	line	NOUN
cord-002994-1zjrunzc	158	18	at	at	ADP
cord-002994-1zjrunzc	158	19	0.5	0.5	NUM
cord-002994-1zjrunzc	158	20	)	)	PUNCT
cord-002994-1zjrunzc	158	21	is	be	AUX
cord-002994-1zjrunzc	158	22	predicted	predict	VERB
cord-002994-1zjrunzc	158	23	glycosylated	glycosylate	VERB
cord-002994-1zjrunzc	158	24	.	.	PUNCT
cord-002994-1zjrunzc	159	1	the	the	DET
cord-002994-1zjrunzc	159	2	"	"	PUNCT
cord-002994-1zjrunzc	159	3	potential	potential	ADJ
cord-002994-1zjrunzc	159	4	"	"	PUNCT
cord-002994-1zjrunzc	159	5	score	score	NOUN
cord-002994-1zjrunzc	159	6	is	be	AUX
cord-002994-1zjrunzc	159	7	the	the	DET
cord-002994-1zjrunzc	159	8	averaged	average	VERB
cord-002994-1zjrunzc	159	9	output	output	NOUN
cord-002994-1zjrunzc	159	10	of	of	ADP
cord-002994-1zjrunzc	159	11	nine	nine	NUM
cord-002994-1zjrunzc	159	12	neural	neural	ADJ
cord-002994-1zjrunzc	159	13	networks	network	NOUN
cord-002994-1zjrunzc	159	14	and	and	CCONJ
cord-002994-1zjrunzc	159	15	the	the	DET
cord-002994-1zjrunzc	159	16	"	"	PUNCT
cord-002994-1zjrunzc	159	17	jury	jury	NOUN
cord-002994-1zjrunzc	159	18	agreement	agreement	NOUN
cord-002994-1zjrunzc	159	19	"	"	PUNCT
cord-002994-1zjrunzc	159	20	indicates	indicate	VERB
cord-002994-1zjrunzc	159	21	how	how	SCONJ
cord-002994-1zjrunzc	159	22	many	many	ADJ
cord-002994-1zjrunzc	159	23	of	of	ADP
cord-002994-1zjrunzc	159	24	the	the	DET
cord-002994-1zjrunzc	159	25	nine	nine	NUM
cord-002994-1zjrunzc	159	26	networks	network	NOUN
cord-002994-1zjrunzc	159	27	support	support	VERB
cord-002994-1zjrunzc	159	28	the	the	DET
cord-002994-1zjrunzc	159	29	prediction	prediction	NOUN
cord-002994-1zjrunzc	159	30	.	.	PUNCT
cord-002994-1zjrunzc	160	1	the	the	DET
cord-002994-1zjrunzc	160	2	n	n	ADJ
cord-002994-1zjrunzc	160	3	-	-	ADJ
cord-002994-1zjrunzc	160	4	glyc	glyc	PROPN
cord-002994-1zjrunzc	160	5	result	result	PROPN
cord-002994-1zjrunzc	160	6	column	column	NOUN
cord-002994-1zjrunzc	160	7	shows	show	VERB
cord-002994-1zjrunzc	160	8	one	one	NUM
cord-002994-1zjrunzc	160	9	of	of	ADP
cord-002994-1zjrunzc	160	10	the	the	DET
cord-002994-1zjrunzc	160	11	following	follow	VERB
cord-002994-1zjrunzc	160	12	outputs	output	NOUN
cord-002994-1zjrunzc	160	13	for	for	ADP
cord-002994-1zjrunzc	160	14	predictions	prediction	NOUN
cord-002994-1zjrunzc	160	15	.	.	PUNCT
cord-002994-1zjrunzc	161	1	n	n	X
cord-002994-1zjrunzc	161	2	-	-	ADJ
cord-002994-1zjrunzc	161	3	glycosylated	glycosylated	ADJ
cord-002994-1zjrunzc	161	4	sites	site	NOUN
cord-002994-1zjrunzc	161	5	highly	highly	ADV
cord-002994-1zjrunzc	161	6	predicted	predict	VERB
cord-002994-1zjrunzc	161	7	by	by	ADP
cord-002994-1zjrunzc	161	8	the	the	DET
cord-002994-1zjrunzc	161	9	nine	nine	NUM
cord-002994-1zjrunzc	161	10	networks	network	NOUN
cord-002994-1zjrunzc	161	11	(	(	PUNCT
cord-002994-1zjrunzc	161	12	potential	potential	ADJ
cord-002994-1zjrunzc	161	13	>	>	PROPN
cord-002994-1zjrunzc	161	14	0.5	0.5	NUM
cord-002994-1zjrunzc	161	15	and	and	CCONJ
cord-002994-1zjrunzc	161	16	jury	jury	NOUN
cord-002994-1zjrunzc	161	17	agreement	agreement	NOUN
cord-002994-1zjrunzc	161	18	of	of	ADP
cord-002994-1zjrunzc	161	19	9/9	9/9	NUM
cord-002994-1zjrunzc	161	20	)	)	PUNCT
cord-002994-1zjrunzc	161	21	are	be	AUX
cord-002994-1zjrunzc	161	22	highlighted	highlight	VERB
cord-002994-1zjrunzc	161	23	in	in	ADP
cord-002994-1zjrunzc	161	24	red	red	PROPN
cord-002994-1zjrunzc	161	25	and	and	CCONJ
cord-002994-1zjrunzc	161	26	the	the	DET
cord-002994-1zjrunzc	161	27	site	site	NOUN
cord-002994-1zjrunzc	161	28	previously	previously	ADV
cord-002994-1zjrunzc	161	29	reported	report	VERB
cord-002994-1zjrunzc	161	30	as	as	ADP
cord-002994-1zjrunzc	161	31	virulence	virulence	NOUN
cord-002994-1zjrunzc	161	32	factor	factor	NOUN
cord-002994-1zjrunzc	161	33	on	on	ADP
cord-002994-1zjrunzc	161	34	e	e	NOUN
cord-002994-1zjrunzc	161	35	protein	protein	NOUN
cord-002994-1zjrunzc	161	36	of	of	ADP
cord-002994-1zjrunzc	161	37	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	161	38	is	be	AUX
cord-002994-1zjrunzc	161	39	colored	color	VERB
cord-002994-1zjrunzc	161	40	in	in	ADP
cord-002994-1zjrunzc	161	41	blue	blue	NOUN
cord-002994-1zjrunzc	161	42	.	.	PUNCT
cord-002994-1zjrunzc	162	1	assessment	assessment	NOUN
cord-002994-1zjrunzc	162	2	of	of	ADP
cord-002994-1zjrunzc	162	3	thermodynamically	thermodynamically	ADV
cord-002994-1zjrunzc	162	4	stable	stable	ADJ
cord-002994-1zjrunzc	162	5	and	and	CCONJ
cord-002994-1zjrunzc	162	6	evolutionarily	evolutionarily	ADV
cord-002994-1zjrunzc	162	7	conserved	conserve	VERB
cord-002994-1zjrunzc	162	8	structural	structural	ADJ
cord-002994-1zjrunzc	162	9	rna	rna	PROPN
cord-002994-1zjrunzc	162	10	domains	domain	NOUN
cord-002994-1zjrunzc	162	11	was	be	AUX
cord-002994-1zjrunzc	162	12	performed	perform	VERB
cord-002994-1zjrunzc	162	13	using	use	VERB
cord-002994-1zjrunzc	162	14	complete	complete	ADJ
cord-002994-1zjrunzc	162	15	non	non	ADJ
cord-002994-1zjrunzc	162	16	-	-	ADJ
cord-002994-1zjrunzc	162	17	coding	coding	ADJ
cord-002994-1zjrunzc	162	18	sequences	sequence	NOUN
cord-002994-1zjrunzc	162	19	of	of	ADP
cord-002994-1zjrunzc	162	20	the	the	DET
cord-002994-1zjrunzc	162	21	11	11	NUM
cord-002994-1zjrunzc	162	22	west	west	PROPN
cord-002994-1zjrunzc	162	23	african	african	ADJ
cord-002994-1zjrunzc	162	24	bagv	bagv	PROPN
cord-002994-1zjrunzc	162	25	isolates	isolate	VERB
cord-002994-1zjrunzc	162	26	characterized	characterize	VERB
cord-002994-1zjrunzc	162	27	in	in	ADP
cord-002994-1zjrunzc	162	28	this	this	DET
cord-002994-1zjrunzc	162	29	study	study	NOUN
cord-002994-1zjrunzc	162	30	and	and	CCONJ
cord-002994-1zjrunzc	162	31	the	the	DET
cord-002994-1zjrunzc	162	32	isolate	isolate	NOUN
cord-002994-1zjrunzc	162	33	from	from	ADP
cord-002994-1zjrunzc	162	34	spain	spain	PROPN
cord-002994-1zjrunzc	162	35	.	.	PUNCT
cord-002994-1zjrunzc	163	1	the	the	DET
cord-002994-1zjrunzc	163	2	rnaz	rnaz	PROPN
cord-002994-1zjrunzc	163	3	method	method	NOUN
cord-002994-1zjrunzc	163	4	implemented	implement	VERB
cord-002994-1zjrunzc	163	5	in	in	ADP
cord-002994-1zjrunzc	163	6	the	the	DET
cord-002994-1zjrunzc	163	7	vienna	vienna	PROPN
cord-002994-1zjrunzc	163	8	rna	rna	PROPN
cord-002994-1zjrunzc	163	9	websuite	websuite	NOUN
cord-002994-1zjrunzc	163	10	was	be	AUX
cord-002994-1zjrunzc	163	11	used	use	VERB
cord-002994-1zjrunzc	163	12	to	to	PART
cord-002994-1zjrunzc	163	13	identify	identify	VERB
cord-002994-1zjrunzc	163	14	conserved	conserved	ADJ
cord-002994-1zjrunzc	163	15	structural	structural	ADJ
cord-002994-1zjrunzc	163	16	rna	rna	PROPN
cord-002994-1zjrunzc	163	17	domains	domain	NOUN
cord-002994-1zjrunzc	163	18	in	in	ADP
cord-002994-1zjrunzc	163	19	the	the	DET
cord-002994-1zjrunzc	163	20	utrs	utrs	PROPN
cord-002994-1zjrunzc	163	21	of	of	ADP
cord-002994-1zjrunzc	163	22	bagv	bagv	PROPN
cord-002994-1zjrunzc	163	23	characterized	characterize	VERB
cord-002994-1zjrunzc	163	24	by	by	ADP
cord-002994-1zjrunzc	163	25	a	a	DET
cord-002994-1zjrunzc	163	26	p	p	X
cord-002994-1zjrunzc	163	27	>	>	SYM
cord-002994-1zjrunzc	163	28	0.5	0.5	NUM
cord-002994-1zjrunzc	163	29	.	.	PUNCT
cord-002994-1zjrunzc	164	1	using	use	VERB
cord-002994-1zjrunzc	164	2	the	the	DET
cord-002994-1zjrunzc	164	3	rnaz	rnaz	NOUN
cord-002994-1zjrunzc	164	4	method	method	NOUN
cord-002994-1zjrunzc	164	5	,	,	PUNCT
cord-002994-1zjrunzc	164	6	highly	highly	ADV
cord-002994-1zjrunzc	164	7	conserved	conserved	ADJ
cord-002994-1zjrunzc	164	8	structural	structural	ADJ
cord-002994-1zjrunzc	164	9	rna	rna	PROPN
cord-002994-1zjrunzc	164	10	domains	domain	NOUN
cord-002994-1zjrunzc	164	11	was	be	AUX
cord-002994-1zjrunzc	164	12	not	not	PART
cord-002994-1zjrunzc	164	13	identified	identify	VERB
cord-002994-1zjrunzc	164	14	in	in	ADP
cord-002994-1zjrunzc	164	15	the	the	DET
cord-002994-1zjrunzc	164	16	5	5	NUM
cord-002994-1zjrunzc	164	17	utr	utr	NOUN
cord-002994-1zjrunzc	164	18	of	of	ADP
cord-002994-1zjrunzc	164	19	bagv	bagv	PROPN
cord-002994-1zjrunzc	164	20	genome	genome	PROPN
cord-002994-1zjrunzc	164	21	while	while	SCONJ
cord-002994-1zjrunzc	164	22	a	a	DET
cord-002994-1zjrunzc	164	23	total	total	NOUN
cord-002994-1zjrunzc	164	24	of	of	ADP
cord-002994-1zjrunzc	164	25	four	four	NUM
cord-002994-1zjrunzc	164	26	highly	highly	ADV
cord-002994-1zjrunzc	164	27	conserved	conserved	ADJ
cord-002994-1zjrunzc	164	28	structural	structural	ADJ
cord-002994-1zjrunzc	164	29	rna	rna	PROPN
cord-002994-1zjrunzc	164	30	domains	domain	NOUN
cord-002994-1zjrunzc	164	31	were	be	AUX
cord-002994-1zjrunzc	164	32	determined	determine	VERB
cord-002994-1zjrunzc	164	33	in	in	ADP
cord-002994-1zjrunzc	164	34	the	the	DET
cord-002994-1zjrunzc	164	35	3	3	NUM
cord-002994-1zjrunzc	164	36	region	region	NOUN
cord-002994-1zjrunzc	164	37	with	with	ADP
cord-002994-1zjrunzc	164	38	respective	respective	ADJ
cord-002994-1zjrunzc	164	39	classification	classification	NOUN
cord-002994-1zjrunzc	164	40	probabilities	probability	NOUN
cord-002994-1zjrunzc	164	41	of	of	ADP
cord-002994-1zjrunzc	164	42	0.671490	0.671490	NUM
cord-002994-1zjrunzc	164	43	,	,	PUNCT
cord-002994-1zjrunzc	164	44	0.994641	0.994641	NUM
cord-002994-1zjrunzc	164	45	,	,	PUNCT
cord-002994-1zjrunzc	164	46	0.976295	0.976295	NUM
cord-002994-1zjrunzc	164	47	and	and	CCONJ
cord-002994-1zjrunzc	164	48	0.846482	0.846482	NUM
cord-002994-1zjrunzc	164	49	(	(	PUNCT
cord-002994-1zjrunzc	164	50	figure	figure	NOUN
cord-002994-1zjrunzc	164	51	s1	s1	PROPN
cord-002994-1zjrunzc	164	52	)	)	PUNCT
cord-002994-1zjrunzc	164	53	.	.	PUNCT
cord-002994-1zjrunzc	165	1	however	however	ADV
cord-002994-1zjrunzc	165	2	,	,	PUNCT
cord-002994-1zjrunzc	165	3	the	the	DET
cord-002994-1zjrunzc	165	4	rnaalifold	rnaalifold	ADJ
cord-002994-1zjrunzc	165	5	method	method	NOUN
cord-002994-1zjrunzc	165	6	implemented	implement	VERB
cord-002994-1zjrunzc	165	7	in	in	ADP
cord-002994-1zjrunzc	165	8	the	the	DET
cord-002994-1zjrunzc	165	9	vienna	vienna	PROPN
cord-002994-1zjrunzc	165	10	rna	rna	PROPN
cord-002994-1zjrunzc	165	11	websuite	websuite	PROPN
cord-002994-1zjrunzc	165	12	server	server	NOUN
cord-002994-1zjrunzc	165	13	predicted	predict	VERB
cord-002994-1zjrunzc	165	14	that	that	SCONJ
cord-002994-1zjrunzc	165	15	,	,	PUNCT
cord-002994-1zjrunzc	165	16	as	as	ADP
cord-002994-1zjrunzc	165	17	in	in	ADP
cord-002994-1zjrunzc	165	18	the	the	DET
cord-002994-1zjrunzc	165	19	genome	genome	NOUN
cord-002994-1zjrunzc	165	20	of	of	ADP
cord-002994-1zjrunzc	165	21	other	other	ADJ
cord-002994-1zjrunzc	165	22	members	member	NOUN
cord-002994-1zjrunzc	165	23	of	of	ADP
cord-002994-1zjrunzc	165	24	the	the	DET
cord-002994-1zjrunzc	165	25	genus	genus	NOUN
cord-002994-1zjrunzc	165	26	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	165	27	,	,	PUNCT
cord-002994-1zjrunzc	165	28	bagv	bagv	PROPN
cord-002994-1zjrunzc	165	29	has	have	VERB
cord-002994-1zjrunzc	165	30	a	a	DET
cord-002994-1zjrunzc	165	31	shorter	short	ADJ
cord-002994-1zjrunzc	165	32	5	5	NUM
cord-002994-1zjrunzc	165	33	utr	utr	NOUN
cord-002994-1zjrunzc	165	34	(	(	PUNCT
cord-002994-1zjrunzc	165	35	≈100	≈100	PROPN
cord-002994-1zjrunzc	165	36	nt	nt	PROPN
cord-002994-1zjrunzc	165	37	)	)	PUNCT
cord-002994-1zjrunzc	165	38	,	,	PUNCT
cord-002994-1zjrunzc	165	39	consisting	consist	VERB
cord-002994-1zjrunzc	165	40	of	of	ADP
cord-002994-1zjrunzc	165	41	a	a	DET
cord-002994-1zjrunzc	165	42	pair	pair	NOUN
cord-002994-1zjrunzc	165	43	of	of	ADP
cord-002994-1zjrunzc	165	44	conserved	conserved	ADJ
cord-002994-1zjrunzc	165	45	stem	stem	NOUN
cord-002994-1zjrunzc	165	46	-	-	PUNCT
cord-002994-1zjrunzc	165	47	loops	loop	NOUN
cord-002994-1zjrunzc	165	48	(	(	PUNCT
cord-002994-1zjrunzc	165	49	sl	sl	PROPN
cord-002994-1zjrunzc	165	50	-	-	PUNCT
cord-002994-1zjrunzc	165	51	a	a	PROPN
cord-002994-1zjrunzc	165	52	and	and	CCONJ
cord-002994-1zjrunzc	165	53	sl	sl	PROPN
cord-002994-1zjrunzc	165	54	-	-	PUNCT
cord-002994-1zjrunzc	165	55	b	b	PROPN
cord-002994-1zjrunzc	165	56	)	)	PUNCT
cord-002994-1zjrunzc	165	57	(	(	PUNCT
cord-002994-1zjrunzc	165	58	figure	figure	NOUN
cord-002994-1zjrunzc	165	59	4	4	NUM
cord-002994-1zjrunzc	165	60	)	)	PUNCT
cord-002994-1zjrunzc	165	61	.	.	PUNCT
cord-002994-1zjrunzc	166	1	sl	sl	PROPN
cord-002994-1zjrunzc	166	2	-	-	PROPN
cord-002994-1zjrunzc	166	3	a	a	PRON
cord-002994-1zjrunzc	166	4	serves	serve	VERB
cord-002994-1zjrunzc	166	5	as	as	ADP
cord-002994-1zjrunzc	166	6	promoter	promoter	NOUN
cord-002994-1zjrunzc	166	7	of	of	ADP
cord-002994-1zjrunzc	166	8	viral	viral	ADJ
cord-002994-1zjrunzc	166	9	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	166	10	activity	activity	NOUN
cord-002994-1zjrunzc	166	11	followed	follow	VERB
cord-002994-1zjrunzc	166	12	by	by	ADP
cord-002994-1zjrunzc	166	13	a	a	DET
cord-002994-1zjrunzc	166	14	shorter	short	ADJ
cord-002994-1zjrunzc	166	15	loop	loop	NOUN
cord-002994-1zjrunzc	166	16	which	which	PRON
cord-002994-1zjrunzc	166	17	contains	contain	VERB
cord-002994-1zjrunzc	166	18	a	a	DET
cord-002994-1zjrunzc	166	19	cyclisation	cyclisation	NOUN
cord-002994-1zjrunzc	166	20	sequence	sequence	NOUN
cord-002994-1zjrunzc	166	21	upstream	upstream	ADV
cord-002994-1zjrunzc	166	22	of	of	ADP
cord-002994-1zjrunzc	166	23	the	the	DET
cord-002994-1zjrunzc	166	24	5	5	NUM
cord-002994-1zjrunzc	166	25	aug	aug	PROPN
cord-002994-1zjrunzc	166	26	(	(	PUNCT
cord-002994-1zjrunzc	166	27	sl	sl	PROPN
cord-002994-1zjrunzc	166	28	-	-	PUNCT
cord-002994-1zjrunzc	166	29	b	b	PROPN
cord-002994-1zjrunzc	166	30	)	)	PUNCT
cord-002994-1zjrunzc	166	31	.	.	PUNCT
cord-002994-1zjrunzc	167	1	the	the	DET
cord-002994-1zjrunzc	167	2	secondary	secondary	ADJ
cord-002994-1zjrunzc	167	3	structure	structure	NOUN
cord-002994-1zjrunzc	167	4	of	of	ADP
cord-002994-1zjrunzc	167	5	bagv	bagv	PROPN
cord-002994-1zjrunzc	167	6	's	's	PART
cord-002994-1zjrunzc	167	7	3	3	NUM
cord-002994-1zjrunzc	167	8	utr	utr	NOUN
cord-002994-1zjrunzc	167	9	could	could	AUX
cord-002994-1zjrunzc	167	10	be	be	AUX
cord-002994-1zjrunzc	167	11	divided	divide	VERB
cord-002994-1zjrunzc	167	12	in	in	ADP
cord-002994-1zjrunzc	167	13	three	three	NUM
cord-002994-1zjrunzc	167	14	parts	part	NOUN
cord-002994-1zjrunzc	167	15	;	;	PUNCT
cord-002994-1zjrunzc	167	16	a	a	DET
cord-002994-1zjrunzc	167	17	highly	highly	ADV
cord-002994-1zjrunzc	167	18	variable	variable	ADJ
cord-002994-1zjrunzc	167	19	domain	domain	NOUN
cord-002994-1zjrunzc	167	20	1	1	NUM
cord-002994-1zjrunzc	167	21	following	follow	VERB
cord-002994-1zjrunzc	167	22	the	the	DET
cord-002994-1zjrunzc	167	23	stop	stop	NOUN
cord-002994-1zjrunzc	167	24	codon	codon	NOUN
cord-002994-1zjrunzc	167	25	and	and	CCONJ
cord-002994-1zjrunzc	167	26	consisting	consist	VERB
cord-002994-1zjrunzc	167	27	in	in	ADP
cord-002994-1zjrunzc	167	28	an	an	DET
cord-002994-1zjrunzc	167	29	au	au	ADJ
cord-002994-1zjrunzc	167	30	-	-	ADJ
cord-002994-1zjrunzc	167	31	rich	rich	ADJ
cord-002994-1zjrunzc	167	32	stem	stem	NOUN
cord-002994-1zjrunzc	167	33	-	-	PUNCT
cord-002994-1zjrunzc	167	34	loop	loop	NOUN
cord-002994-1zjrunzc	167	35	(	(	PUNCT
cord-002994-1zjrunzc	167	36	sl	sl	PROPN
cord-002994-1zjrunzc	167	37	-	-	PUNCT
cord-002994-1zjrunzc	167	38	i	i	PROPN
cord-002994-1zjrunzc	167	39	)	)	PUNCT
cord-002994-1zjrunzc	167	40	,	,	PUNCT
cord-002994-1zjrunzc	167	41	a	a	DET
cord-002994-1zjrunzc	167	42	second	second	ADJ
cord-002994-1zjrunzc	167	43	domain	domain	NOUN
cord-002994-1zjrunzc	167	44	2	2	NUM
cord-002994-1zjrunzc	167	45	with	with	ADP
cord-002994-1zjrunzc	167	46	highly	highly	ADV
cord-002994-1zjrunzc	167	47	conserved	conserved	ADJ
cord-002994-1zjrunzc	167	48	sequence	sequence	NOUN
cord-002994-1zjrunzc	167	49	and	and	CCONJ
cord-002994-1zjrunzc	167	50	two	two	NUM
cord-002994-1zjrunzc	167	51	stem	stem	NOUN
cord-002994-1zjrunzc	167	52	-	-	PUNCT
cord-002994-1zjrunzc	167	53	loops	loop	NOUN
cord-002994-1zjrunzc	167	54	(	(	PUNCT
cord-002994-1zjrunzc	167	55	sl	sl	PROPN
cord-002994-1zjrunzc	167	56	-	-	PUNCT
cord-002994-1zjrunzc	167	57	ii	ii	PROPN
cord-002994-1zjrunzc	167	58	and	and	CCONJ
cord-002994-1zjrunzc	167	59	sl	sl	PROPN
cord-002994-1zjrunzc	167	60	-	-	PUNCT
cord-002994-1zjrunzc	167	61	iii	iii	PROPN
cord-002994-1zjrunzc	167	62	)	)	PUNCT
cord-002994-1zjrunzc	167	63	and	and	CCONJ
cord-002994-1zjrunzc	167	64	dumbbell	dumbbell	NOUN
cord-002994-1zjrunzc	167	65	structures	structure	NOUN
cord-002994-1zjrunzc	167	66	(	(	PUNCT
cord-002994-1zjrunzc	167	67	db1	db1	NOUN
cord-002994-1zjrunzc	167	68	and	and	CCONJ
cord-002994-1zjrunzc	167	69	db2	db2	PROPN
cord-002994-1zjrunzc	167	70	)	)	PUNCT
cord-002994-1zjrunzc	167	71	,	,	PUNCT
cord-002994-1zjrunzc	167	72	and	and	CCONJ
cord-002994-1zjrunzc	167	73	the	the	DET
cord-002994-1zjrunzc	167	74	moderately	moderately	ADV
cord-002994-1zjrunzc	167	75	conserved	conserve	VERB
cord-002994-1zjrunzc	167	76	distal	distal	ADJ
cord-002994-1zjrunzc	167	77	domain	domain	NOUN
cord-002994-1zjrunzc	167	78	3	3	NUM
cord-002994-1zjrunzc	167	79	which	which	PRON
cord-002994-1zjrunzc	167	80	contains	contain	VERB
cord-002994-1zjrunzc	167	81	the	the	DET
cord-002994-1zjrunzc	167	82	complementary	complementary	ADJ
cord-002994-1zjrunzc	167	83	cyclisation	cyclisation	NOUN
cord-002994-1zjrunzc	167	84	elements	element	NOUN
cord-002994-1zjrunzc	167	85	.	.	PUNCT
cord-002994-1zjrunzc	168	1	in	in	ADP
cord-002994-1zjrunzc	168	2	the	the	DET
cord-002994-1zjrunzc	168	3	intermediate	intermediate	ADJ
cord-002994-1zjrunzc	168	4	domain	domain	NOUN
cord-002994-1zjrunzc	168	5	,	,	PUNCT
cord-002994-1zjrunzc	168	6	the	the	DET
cord-002994-1zjrunzc	168	7	sl	sl	PROPN
cord-002994-1zjrunzc	168	8	-	-	PUNCT
cord-002994-1zjrunzc	168	9	ii	ii	PROPN
cord-002994-1zjrunzc	168	10	presented	present	VERB
cord-002994-1zjrunzc	168	11	a	a	DET
cord-002994-1zjrunzc	168	12	pseudoknot	pseudoknot	NOUN
cord-002994-1zjrunzc	168	13	pk1	pk1	PROPN
cord-002994-1zjrunzc	168	14	preceding	precede	VERB
cord-002994-1zjrunzc	168	15	a	a	DET
cord-002994-1zjrunzc	168	16	short	short	ADJ
cord-002994-1zjrunzc	168	17	conserved	conserved	ADJ
cord-002994-1zjrunzc	168	18	loop	loop	NOUN
cord-002994-1zjrunzc	168	19	(	(	PUNCT
cord-002994-1zjrunzc	168	20	rcs3	rcs3	PROPN
cord-002994-1zjrunzc	168	21	)	)	PUNCT
cord-002994-1zjrunzc	168	22	.	.	PUNCT
cord-002994-1zjrunzc	169	1	this	this	DET
cord-002994-1zjrunzc	169	2	structural	structural	ADJ
cord-002994-1zjrunzc	169	3	motif	motif	NOUN
cord-002994-1zjrunzc	169	4	was	be	AUX
cord-002994-1zjrunzc	169	5	repeated	repeat	VERB
cord-002994-1zjrunzc	169	6	in	in	ADP
cord-002994-1zjrunzc	169	7	a	a	DET
cord-002994-1zjrunzc	169	8	stem	stem	NOUN
cord-002994-1zjrunzc	169	9	-	-	PUNCT
cord-002994-1zjrunzc	169	10	loop	loop	NOUN
cord-002994-1zjrunzc	169	11	sl	sl	PROPN
cord-002994-1zjrunzc	169	12	-	-	PUNCT
cord-002994-1zjrunzc	169	13	iii	iii	PROPN
cord-002994-1zjrunzc	169	14	with	with	ADP
cord-002994-1zjrunzc	169	15	pk2	pk2	PROPN
cord-002994-1zjrunzc	169	16	and	and	CCONJ
cord-002994-1zjrunzc	169	17	cs3	cs3	PROPN
cord-002994-1zjrunzc	169	18	.	.	PUNCT
cord-002994-1zjrunzc	170	1	these	these	DET
cord-002994-1zjrunzc	170	2	stem	stem	NOUN
cord-002994-1zjrunzc	170	3	-	-	PUNCT
cord-002994-1zjrunzc	170	4	loops	loop	NOUN
cord-002994-1zjrunzc	170	5	were	be	AUX
cord-002994-1zjrunzc	170	6	followed	follow	VERB
cord-002994-1zjrunzc	170	7	by	by	ADP
cord-002994-1zjrunzc	170	8	dumbbell	dumbbell	NOUN
cord-002994-1zjrunzc	170	9	structures	structure	NOUN
cord-002994-1zjrunzc	170	10	db1	db1	NOUN
cord-002994-1zjrunzc	170	11	and	and	CCONJ
cord-002994-1zjrunzc	170	12	db2	db2	NOUN
cord-002994-1zjrunzc	170	13	that	that	PRON
cord-002994-1zjrunzc	170	14	presented	present	VERB
cord-002994-1zjrunzc	170	15	conserved	conserved	ADJ
cord-002994-1zjrunzc	170	16	loop	loop	NOUN
cord-002994-1zjrunzc	170	17	rcs2	rcs2	ADV
cord-002994-1zjrunzc	170	18	connected	connect	VERB
cord-002994-1zjrunzc	170	19	with	with	ADP
cord-002994-1zjrunzc	170	20	a	a	DET
cord-002994-1zjrunzc	170	21	pseudoknot	pseudoknot	NOUN
cord-002994-1zjrunzc	170	22	pk3	pk3	NOUN
cord-002994-1zjrunzc	170	23	and	and	CCONJ
cord-002994-1zjrunzc	170	24	its	its	PRON
cord-002994-1zjrunzc	170	25	repetition	repetition	NOUN
cord-002994-1zjrunzc	170	26	cs2	cs2	NOUN
cord-002994-1zjrunzc	170	27	,	,	PUNCT
cord-002994-1zjrunzc	170	28	respectively	respectively	ADV
cord-002994-1zjrunzc	170	29	[	[	X
cord-002994-1zjrunzc	170	30	43	43	NUM
cord-002994-1zjrunzc	170	31	]	]	PUNCT
cord-002994-1zjrunzc	170	32	.	.	PUNCT
cord-002994-1zjrunzc	171	1	thus	thus	ADV
cord-002994-1zjrunzc	171	2	,	,	PUNCT
cord-002994-1zjrunzc	171	3	organization	organization	NOUN
cord-002994-1zjrunzc	171	4	of	of	ADP
cord-002994-1zjrunzc	171	5	conserved	conserved	ADJ
cord-002994-1zjrunzc	171	6	sequences	sequence	NOUN
cord-002994-1zjrunzc	171	7	on	on	ADP
cord-002994-1zjrunzc	171	8	consensus	consensus	NOUN
cord-002994-1zjrunzc	171	9	secondary	secondary	ADJ
cord-002994-1zjrunzc	171	10	structure	structure	NOUN
cord-002994-1zjrunzc	171	11	of	of	ADP
cord-002994-1zjrunzc	171	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	171	13	's	's	PART
cord-002994-1zjrunzc	171	14	3	3	NUM
cord-002994-1zjrunzc	171	15	utr	utr	NOUN
cord-002994-1zjrunzc	171	16	was	be	AUX
cord-002994-1zjrunzc	171	17	structured	structure	VERB
cord-002994-1zjrunzc	171	18	rcs3	rcs3	ADJ
cord-002994-1zjrunzc	171	19	-	-	PUNCT
cord-002994-1zjrunzc	171	20	cs3	cs3	ADJ
cord-002994-1zjrunzc	171	21	-	-	PUNCT
cord-002994-1zjrunzc	171	22	rcs2	rcs2	ADJ
cord-002994-1zjrunzc	171	23	-	-	PUNCT
cord-002994-1zjrunzc	171	24	cs2	cs2	NOUN
cord-002994-1zjrunzc	171	25	-	-	PUNCT
cord-002994-1zjrunzc	171	26	imcs1	imcs1	NOUN
cord-002994-1zjrunzc	171	27	.	.	PUNCT
cord-002994-1zjrunzc	172	1	indeed	indeed	ADV
cord-002994-1zjrunzc	172	2	,	,	PUNCT
cord-002994-1zjrunzc	172	3	cs1	cs1	PROPN
cord-002994-1zjrunzc	172	4	was	be	AUX
cord-002994-1zjrunzc	172	5	imperfect	imperfect	ADJ
cord-002994-1zjrunzc	172	6	(	(	PUNCT
cord-002994-1zjrunzc	172	7	imcs1	imcs1	NOUN
cord-002994-1zjrunzc	172	8	)	)	PUNCT
cord-002994-1zjrunzc	172	9	only	only	ADV
cord-002994-1zjrunzc	172	10	on	on	ADP
cord-002994-1zjrunzc	172	11	sequences	sequence	NOUN
cord-002994-1zjrunzc	172	12	of	of	ADP
cord-002994-1zjrunzc	172	13	west	west	PROPN
cord-002994-1zjrunzc	172	14	african	african	ADJ
cord-002994-1zjrunzc	172	15	bagv	bagv	PROPN
cord-002994-1zjrunzc	172	16	isolates	isolate	VERB
cord-002994-1zjrunzc	172	17	with	with	ADP
cord-002994-1zjrunzc	172	18	a	a	DET
cord-002994-1zjrunzc	172	19	total	total	NOUN
cord-002994-1zjrunzc	172	20	of	of	ADP
cord-002994-1zjrunzc	172	21	nine	nine	NUM
cord-002994-1zjrunzc	172	22	substitutions	substitution	NOUN
cord-002994-1zjrunzc	172	23	compared	compare	VERB
cord-002994-1zjrunzc	172	24	to	to	ADP
cord-002994-1zjrunzc	172	25	the	the	DET
cord-002994-1zjrunzc	172	26	corresponding	corresponding	ADJ
cord-002994-1zjrunzc	172	27	consensus	consensus	NOUN
cord-002994-1zjrunzc	172	28	sequence	sequence	NOUN
cord-002994-1zjrunzc	172	29	previously	previously	ADV
cord-002994-1zjrunzc	172	30	described	describe	VERB
cord-002994-1zjrunzc	172	31	[	[	SYM
cord-002994-1zjrunzc	172	32	3	3	NUM
cord-002994-1zjrunzc	172	33	]	]	PUNCT
cord-002994-1zjrunzc	172	34	.	.	PUNCT
cord-002994-1zjrunzc	173	1	viruses	virus	NOUN
cord-002994-1zjrunzc	173	2	2018	2018	NUM
cord-002994-1zjrunzc	173	3	,	,	PUNCT
cord-002994-1zjrunzc	173	4	10	10	NUM
cord-002994-1zjrunzc	173	5	,	,	PUNCT
cord-002994-1zjrunzc	173	6	x	x	SYM
cord-002994-1zjrunzc	173	7	12	12	NUM
cord-002994-1zjrunzc	173	8	of	of	ADP
cord-002994-1zjrunzc	173	9	26	26	NUM
cord-002994-1zjrunzc	173	10	rna	rna	NOUN
cord-002994-1zjrunzc	173	11	websuite	websuite	NOUN
cord-002994-1zjrunzc	173	12	was	be	AUX
cord-002994-1zjrunzc	173	13	used	use	VERB
cord-002994-1zjrunzc	173	14	to	to	PART
cord-002994-1zjrunzc	173	15	identify	identify	VERB
cord-002994-1zjrunzc	173	16	conserved	conserved	ADJ
cord-002994-1zjrunzc	173	17	structural	structural	ADJ
cord-002994-1zjrunzc	173	18	rna	rna	PROPN
cord-002994-1zjrunzc	173	19	domains	domain	NOUN
cord-002994-1zjrunzc	173	20	in	in	ADP
cord-002994-1zjrunzc	173	21	the	the	DET
cord-002994-1zjrunzc	173	22	utrs	utrs	PROPN
cord-002994-1zjrunzc	173	23	of	of	ADP
cord-002994-1zjrunzc	173	24	bagv	bagv	PROPN
cord-002994-1zjrunzc	173	25	characterized	characterize	VERB
cord-002994-1zjrunzc	173	26	by	by	ADP
cord-002994-1zjrunzc	173	27	a	a	DET
cord-002994-1zjrunzc	173	28	p	p	X
cord-002994-1zjrunzc	173	29	>	>	SYM
cord-002994-1zjrunzc	173	30	0.5	0.5	NUM
cord-002994-1zjrunzc	173	31	.	.	PUNCT
cord-002994-1zjrunzc	174	1	using	use	VERB
cord-002994-1zjrunzc	174	2	the	the	DET
cord-002994-1zjrunzc	174	3	rnaz	rnaz	NOUN
cord-002994-1zjrunzc	174	4	method	method	NOUN
cord-002994-1zjrunzc	174	5	,	,	PUNCT
cord-002994-1zjrunzc	174	6	highly	highly	ADV
cord-002994-1zjrunzc	174	7	conserved	conserved	ADJ
cord-002994-1zjrunzc	174	8	structural	structural	ADJ
cord-002994-1zjrunzc	174	9	rna	rna	PROPN
cord-002994-1zjrunzc	174	10	domains	domain	NOUN
cord-002994-1zjrunzc	174	11	was	be	AUX
cord-002994-1zjrunzc	174	12	not	not	PART
cord-002994-1zjrunzc	174	13	identified	identify	VERB
cord-002994-1zjrunzc	174	14	in	in	ADP
cord-002994-1zjrunzc	174	15	the	the	DET
cord-002994-1zjrunzc	174	16	5′	5′	NUM
cord-002994-1zjrunzc	174	17	utr	utr	NOUN
cord-002994-1zjrunzc	174	18	of	of	ADP
cord-002994-1zjrunzc	174	19	bagv	bagv	PROPN
cord-002994-1zjrunzc	174	20	genome	genome	PROPN
cord-002994-1zjrunzc	174	21	while	while	SCONJ
cord-002994-1zjrunzc	174	22	a	a	DET
cord-002994-1zjrunzc	174	23	total	total	NOUN
cord-002994-1zjrunzc	174	24	of	of	ADP
cord-002994-1zjrunzc	174	25	four	four	NUM
cord-002994-1zjrunzc	174	26	highly	highly	ADV
cord-002994-1zjrunzc	174	27	conserved	conserved	ADJ
cord-002994-1zjrunzc	174	28	structural	structural	ADJ
cord-002994-1zjrunzc	174	29	rna	rna	PROPN
cord-002994-1zjrunzc	174	30	domains	domain	NOUN
cord-002994-1zjrunzc	174	31	were	be	AUX
cord-002994-1zjrunzc	174	32	determined	determine	VERB
cord-002994-1zjrunzc	174	33	in	in	ADP
cord-002994-1zjrunzc	174	34	the	the	DET
cord-002994-1zjrunzc	174	35	3′	3′	NUM
cord-002994-1zjrunzc	174	36	region	region	NOUN
cord-002994-1zjrunzc	174	37	with	with	ADP
cord-002994-1zjrunzc	174	38	respective	respective	ADJ
cord-002994-1zjrunzc	174	39	classification	classification	NOUN
cord-002994-1zjrunzc	174	40	probabilities	probability	NOUN
cord-002994-1zjrunzc	174	41	of	of	ADP
cord-002994-1zjrunzc	174	42	0.671490	0.671490	NUM
cord-002994-1zjrunzc	174	43	,	,	PUNCT
cord-002994-1zjrunzc	174	44	0.994641	0.994641	NUM
cord-002994-1zjrunzc	174	45	,	,	PUNCT
cord-002994-1zjrunzc	174	46	0.976295	0.976295	NUM
cord-002994-1zjrunzc	174	47	and	and	CCONJ
cord-002994-1zjrunzc	174	48	0.846482	0.846482	NUM
cord-002994-1zjrunzc	174	49	(	(	PUNCT
cord-002994-1zjrunzc	174	50	figure	figure	NOUN
cord-002994-1zjrunzc	174	51	s1	s1	PROPN
cord-002994-1zjrunzc	174	52	)	)	PUNCT
cord-002994-1zjrunzc	174	53	.	.	PUNCT
cord-002994-1zjrunzc	175	1	however	however	ADV
cord-002994-1zjrunzc	175	2	,	,	PUNCT
cord-002994-1zjrunzc	175	3	the	the	DET
cord-002994-1zjrunzc	175	4	rnaalifold	rnaalifold	ADJ
cord-002994-1zjrunzc	175	5	method	method	NOUN
cord-002994-1zjrunzc	175	6	implemented	implement	VERB
cord-002994-1zjrunzc	175	7	in	in	ADP
cord-002994-1zjrunzc	175	8	the	the	DET
cord-002994-1zjrunzc	175	9	vienna	vienna	PROPN
cord-002994-1zjrunzc	175	10	rna	rna	PROPN
cord-002994-1zjrunzc	175	11	websuite	websuite	PROPN
cord-002994-1zjrunzc	175	12	server	server	NOUN
cord-002994-1zjrunzc	175	13	predicted	predict	VERB
cord-002994-1zjrunzc	175	14	that	that	SCONJ
cord-002994-1zjrunzc	175	15	,	,	PUNCT
cord-002994-1zjrunzc	175	16	as	as	ADP
cord-002994-1zjrunzc	175	17	in	in	ADP
cord-002994-1zjrunzc	175	18	the	the	DET
cord-002994-1zjrunzc	175	19	genome	genome	NOUN
cord-002994-1zjrunzc	175	20	of	of	ADP
cord-002994-1zjrunzc	175	21	other	other	ADJ
cord-002994-1zjrunzc	175	22	members	member	NOUN
cord-002994-1zjrunzc	175	23	of	of	ADP
cord-002994-1zjrunzc	175	24	the	the	DET
cord-002994-1zjrunzc	175	25	genus	genus	NOUN
cord-002994-1zjrunzc	175	26	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	175	27	,	,	PUNCT
cord-002994-1zjrunzc	175	28	bagv	bagv	PROPN
cord-002994-1zjrunzc	175	29	has	have	VERB
cord-002994-1zjrunzc	175	30	a	a	DET
cord-002994-1zjrunzc	175	31	shorter	short	ADJ
cord-002994-1zjrunzc	175	32	5′	5′	NUM
cord-002994-1zjrunzc	175	33	utr	utr	NOUN
cord-002994-1zjrunzc	175	34	(	(	PUNCT
cord-002994-1zjrunzc	175	35	≈100	≈100	PROPN
cord-002994-1zjrunzc	175	36	nt	nt	PROPN
cord-002994-1zjrunzc	175	37	)	)	PUNCT
cord-002994-1zjrunzc	175	38	,	,	PUNCT
cord-002994-1zjrunzc	175	39	consisting	consist	VERB
cord-002994-1zjrunzc	175	40	of	of	ADP
cord-002994-1zjrunzc	175	41	a	a	DET
cord-002994-1zjrunzc	175	42	pair	pair	NOUN
cord-002994-1zjrunzc	175	43	of	of	ADP
cord-002994-1zjrunzc	175	44	conserved	conserved	ADJ
cord-002994-1zjrunzc	175	45	stem	stem	NOUN
cord-002994-1zjrunzc	175	46	-	-	PUNCT
cord-002994-1zjrunzc	175	47	loops	loop	NOUN
cord-002994-1zjrunzc	175	48	(	(	PUNCT
cord-002994-1zjrunzc	175	49	sl	sl	PROPN
cord-002994-1zjrunzc	175	50	-	-	PUNCT
cord-002994-1zjrunzc	175	51	a	a	PROPN
cord-002994-1zjrunzc	175	52	and	and	CCONJ
cord-002994-1zjrunzc	175	53	sl	sl	PROPN
cord-002994-1zjrunzc	175	54	-	-	PUNCT
cord-002994-1zjrunzc	175	55	b	b	PROPN
cord-002994-1zjrunzc	175	56	)	)	PUNCT
cord-002994-1zjrunzc	175	57	(	(	PUNCT
cord-002994-1zjrunzc	175	58	figure	figure	NOUN
cord-002994-1zjrunzc	175	59	4	4	NUM
cord-002994-1zjrunzc	175	60	)	)	PUNCT
cord-002994-1zjrunzc	175	61	.	.	PUNCT
cord-002994-1zjrunzc	176	1	sl	sl	PROPN
cord-002994-1zjrunzc	176	2	-	-	PROPN
cord-002994-1zjrunzc	176	3	a	a	PRON
cord-002994-1zjrunzc	176	4	serves	serve	VERB
cord-002994-1zjrunzc	176	5	as	as	ADP
cord-002994-1zjrunzc	176	6	promoter	promoter	NOUN
cord-002994-1zjrunzc	176	7	of	of	ADP
cord-002994-1zjrunzc	176	8	viral	viral	ADJ
cord-002994-1zjrunzc	176	9	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	176	10	activity	activity	NOUN
cord-002994-1zjrunzc	176	11	followed	follow	VERB
cord-002994-1zjrunzc	176	12	by	by	ADP
cord-002994-1zjrunzc	176	13	a	a	DET
cord-002994-1zjrunzc	176	14	shorter	short	ADJ
cord-002994-1zjrunzc	176	15	loop	loop	NOUN
cord-002994-1zjrunzc	176	16	which	which	PRON
cord-002994-1zjrunzc	176	17	contains	contain	VERB
cord-002994-1zjrunzc	176	18	a	a	DET
cord-002994-1zjrunzc	176	19	cyclisation	cyclisation	NOUN
cord-002994-1zjrunzc	176	20	sequence	sequence	NOUN
cord-002994-1zjrunzc	176	21	upstream	upstream	ADV
cord-002994-1zjrunzc	176	22	of	of	ADP
cord-002994-1zjrunzc	176	23	the	the	DET
cord-002994-1zjrunzc	176	24	5′	5′	NUM
cord-002994-1zjrunzc	176	25	aug	aug	PROPN
cord-002994-1zjrunzc	176	26	(	(	PUNCT
cord-002994-1zjrunzc	176	27	sl	sl	PROPN
cord-002994-1zjrunzc	176	28	-	-	PUNCT
cord-002994-1zjrunzc	176	29	b	b	PROPN
cord-002994-1zjrunzc	176	30	)	)	PUNCT
cord-002994-1zjrunzc	176	31	.	.	PUNCT
cord-002994-1zjrunzc	177	1	the	the	DET
cord-002994-1zjrunzc	177	2	secondary	secondary	ADJ
cord-002994-1zjrunzc	177	3	structure	structure	NOUN
cord-002994-1zjrunzc	177	4	of	of	ADP
cord-002994-1zjrunzc	177	5	bagv	bagv	PROPN
cord-002994-1zjrunzc	177	6	's	's	PART
cord-002994-1zjrunzc	177	7	3′	3′	NUM
cord-002994-1zjrunzc	177	8	utr	utr	NOUN
cord-002994-1zjrunzc	177	9	could	could	AUX
cord-002994-1zjrunzc	177	10	be	be	AUX
cord-002994-1zjrunzc	177	11	divided	divide	VERB
cord-002994-1zjrunzc	177	12	in	in	ADP
cord-002994-1zjrunzc	177	13	three	three	NUM
cord-002994-1zjrunzc	177	14	parts	part	NOUN
cord-002994-1zjrunzc	177	15	;	;	PUNCT
cord-002994-1zjrunzc	177	16	a	a	DET
cord-002994-1zjrunzc	177	17	highly	highly	ADV
cord-002994-1zjrunzc	177	18	variable	variable	ADJ
cord-002994-1zjrunzc	177	19	domain	domain	NOUN
cord-002994-1zjrunzc	177	20	1	1	NUM
cord-002994-1zjrunzc	177	21	following	follow	VERB
cord-002994-1zjrunzc	177	22	the	the	DET
cord-002994-1zjrunzc	177	23	stop	stop	NOUN
cord-002994-1zjrunzc	177	24	codon	codon	NOUN
cord-002994-1zjrunzc	177	25	and	and	CCONJ
cord-002994-1zjrunzc	177	26	consisting	consist	VERB
cord-002994-1zjrunzc	177	27	in	in	ADP
cord-002994-1zjrunzc	177	28	an	an	DET
cord-002994-1zjrunzc	177	29	au	au	ADJ
cord-002994-1zjrunzc	177	30	-	-	ADJ
cord-002994-1zjrunzc	177	31	rich	rich	ADJ
cord-002994-1zjrunzc	177	32	stem	stem	NOUN
cord-002994-1zjrunzc	177	33	-	-	PUNCT
cord-002994-1zjrunzc	177	34	loop	loop	NOUN
cord-002994-1zjrunzc	177	35	(	(	PUNCT
cord-002994-1zjrunzc	177	36	sl	sl	PROPN
cord-002994-1zjrunzc	177	37	-	-	PUNCT
cord-002994-1zjrunzc	177	38	i	i	PROPN
cord-002994-1zjrunzc	177	39	)	)	PUNCT
cord-002994-1zjrunzc	177	40	,	,	PUNCT
cord-002994-1zjrunzc	177	41	a	a	DET
cord-002994-1zjrunzc	177	42	second	second	ADJ
cord-002994-1zjrunzc	177	43	domain	domain	NOUN
cord-002994-1zjrunzc	177	44	2	2	NUM
cord-002994-1zjrunzc	177	45	with	with	ADP
cord-002994-1zjrunzc	177	46	highly	highly	ADV
cord-002994-1zjrunzc	177	47	conserved	conserved	ADJ
cord-002994-1zjrunzc	177	48	sequence	sequence	NOUN
cord-002994-1zjrunzc	177	49	and	and	CCONJ
cord-002994-1zjrunzc	177	50	two	two	NUM
cord-002994-1zjrunzc	177	51	stem	stem	NOUN
cord-002994-1zjrunzc	177	52	-	-	PUNCT
cord-002994-1zjrunzc	177	53	loops	loop	NOUN
cord-002994-1zjrunzc	177	54	(	(	PUNCT
cord-002994-1zjrunzc	177	55	sl	sl	PROPN
cord-002994-1zjrunzc	177	56	-	-	PUNCT
cord-002994-1zjrunzc	177	57	ii	ii	PROPN
cord-002994-1zjrunzc	177	58	and	and	CCONJ
cord-002994-1zjrunzc	177	59	sl	sl	PROPN
cord-002994-1zjrunzc	177	60	-	-	PUNCT
cord-002994-1zjrunzc	177	61	iii	iii	PROPN
cord-002994-1zjrunzc	177	62	)	)	PUNCT
cord-002994-1zjrunzc	177	63	and	and	CCONJ
cord-002994-1zjrunzc	177	64	dumbbell	dumbbell	NOUN
cord-002994-1zjrunzc	177	65	structures	structure	NOUN
cord-002994-1zjrunzc	177	66	(	(	PUNCT
cord-002994-1zjrunzc	177	67	db1	db1	NOUN
cord-002994-1zjrunzc	177	68	and	and	CCONJ
cord-002994-1zjrunzc	177	69	db2	db2	PROPN
cord-002994-1zjrunzc	177	70	)	)	PUNCT
cord-002994-1zjrunzc	177	71	,	,	PUNCT
cord-002994-1zjrunzc	177	72	and	and	CCONJ
cord-002994-1zjrunzc	177	73	the	the	DET
cord-002994-1zjrunzc	177	74	moderately	moderately	ADV
cord-002994-1zjrunzc	177	75	conserved	conserve	VERB
cord-002994-1zjrunzc	177	76	distal	distal	ADJ
cord-002994-1zjrunzc	177	77	domain	domain	NOUN
cord-002994-1zjrunzc	177	78	3	3	NUM
cord-002994-1zjrunzc	177	79	which	which	PRON
cord-002994-1zjrunzc	177	80	contains	contain	VERB
cord-002994-1zjrunzc	177	81	the	the	DET
cord-002994-1zjrunzc	177	82	complementary	complementary	ADJ
cord-002994-1zjrunzc	177	83	cyclisation	cyclisation	NOUN
cord-002994-1zjrunzc	177	84	elements	element	NOUN
cord-002994-1zjrunzc	177	85	.	.	PUNCT
cord-002994-1zjrunzc	178	1	in	in	ADP
cord-002994-1zjrunzc	178	2	the	the	DET
cord-002994-1zjrunzc	178	3	intermediate	intermediate	ADJ
cord-002994-1zjrunzc	178	4	domain	domain	NOUN
cord-002994-1zjrunzc	178	5	,	,	PUNCT
cord-002994-1zjrunzc	178	6	the	the	DET
cord-002994-1zjrunzc	178	7	sl	sl	PROPN
cord-002994-1zjrunzc	178	8	-	-	PUNCT
cord-002994-1zjrunzc	178	9	ii	ii	PROPN
cord-002994-1zjrunzc	178	10	presented	present	VERB
cord-002994-1zjrunzc	178	11	a	a	DET
cord-002994-1zjrunzc	178	12	pseudoknot	pseudoknot	NOUN
cord-002994-1zjrunzc	178	13	pk1	pk1	PROPN
cord-002994-1zjrunzc	178	14	preceding	precede	VERB
cord-002994-1zjrunzc	178	15	a	a	DET
cord-002994-1zjrunzc	178	16	short	short	ADJ
cord-002994-1zjrunzc	178	17	conserved	conserved	ADJ
cord-002994-1zjrunzc	178	18	loop	loop	NOUN
cord-002994-1zjrunzc	178	19	(	(	PUNCT
cord-002994-1zjrunzc	178	20	rcs3	rcs3	PROPN
cord-002994-1zjrunzc	178	21	)	)	PUNCT
cord-002994-1zjrunzc	178	22	.	.	PUNCT
cord-002994-1zjrunzc	179	1	this	this	DET
cord-002994-1zjrunzc	179	2	structural	structural	ADJ
cord-002994-1zjrunzc	179	3	motif	motif	NOUN
cord-002994-1zjrunzc	179	4	was	be	AUX
cord-002994-1zjrunzc	179	5	repeated	repeat	VERB
cord-002994-1zjrunzc	179	6	in	in	ADP
cord-002994-1zjrunzc	179	7	a	a	DET
cord-002994-1zjrunzc	179	8	stem	stem	NOUN
cord-002994-1zjrunzc	179	9	-	-	PUNCT
cord-002994-1zjrunzc	179	10	loop	loop	NOUN
cord-002994-1zjrunzc	179	11	sl	sl	PROPN
cord-002994-1zjrunzc	179	12	-	-	PUNCT
cord-002994-1zjrunzc	179	13	iii	iii	PROPN
cord-002994-1zjrunzc	179	14	with	with	ADP
cord-002994-1zjrunzc	179	15	pk2	pk2	PROPN
cord-002994-1zjrunzc	179	16	and	and	CCONJ
cord-002994-1zjrunzc	179	17	cs3	cs3	PROPN
cord-002994-1zjrunzc	179	18	.	.	PUNCT
cord-002994-1zjrunzc	180	1	these	these	DET
cord-002994-1zjrunzc	180	2	stem	stem	NOUN
cord-002994-1zjrunzc	180	3	-	-	PUNCT
cord-002994-1zjrunzc	180	4	loops	loop	NOUN
cord-002994-1zjrunzc	180	5	were	be	AUX
cord-002994-1zjrunzc	180	6	followed	follow	VERB
cord-002994-1zjrunzc	180	7	by	by	ADP
cord-002994-1zjrunzc	180	8	dumbbell	dumbbell	NOUN
cord-002994-1zjrunzc	180	9	structures	structure	NOUN
cord-002994-1zjrunzc	180	10	db1	db1	NOUN
cord-002994-1zjrunzc	180	11	and	and	CCONJ
cord-002994-1zjrunzc	180	12	db2	db2	NOUN
cord-002994-1zjrunzc	180	13	that	that	PRON
cord-002994-1zjrunzc	180	14	presented	present	VERB
cord-002994-1zjrunzc	180	15	conserved	conserved	ADJ
cord-002994-1zjrunzc	180	16	loop	loop	NOUN
cord-002994-1zjrunzc	180	17	rcs2	rcs2	ADV
cord-002994-1zjrunzc	180	18	connected	connect	VERB
cord-002994-1zjrunzc	180	19	with	with	ADP
cord-002994-1zjrunzc	180	20	a	a	DET
cord-002994-1zjrunzc	180	21	pseudoknot	pseudoknot	NOUN
cord-002994-1zjrunzc	180	22	pk3	pk3	NOUN
cord-002994-1zjrunzc	180	23	and	and	CCONJ
cord-002994-1zjrunzc	180	24	its	its	PRON
cord-002994-1zjrunzc	180	25	repetition	repetition	NOUN
cord-002994-1zjrunzc	180	26	cs2	cs2	NOUN
cord-002994-1zjrunzc	180	27	,	,	PUNCT
cord-002994-1zjrunzc	180	28	respectively	respectively	ADV
cord-002994-1zjrunzc	180	29	[	[	X
cord-002994-1zjrunzc	180	30	43	43	NUM
cord-002994-1zjrunzc	180	31	]	]	PUNCT
cord-002994-1zjrunzc	180	32	.	.	PUNCT
cord-002994-1zjrunzc	181	1	thus	thus	ADV
cord-002994-1zjrunzc	181	2	,	,	PUNCT
cord-002994-1zjrunzc	181	3	organization	organization	NOUN
cord-002994-1zjrunzc	181	4	of	of	ADP
cord-002994-1zjrunzc	181	5	conserved	conserved	ADJ
cord-002994-1zjrunzc	181	6	sequences	sequence	NOUN
cord-002994-1zjrunzc	181	7	on	on	ADP
cord-002994-1zjrunzc	181	8	consensus	consensus	NOUN
cord-002994-1zjrunzc	181	9	secondary	secondary	ADJ
cord-002994-1zjrunzc	181	10	structure	structure	NOUN
cord-002994-1zjrunzc	181	11	of	of	ADP
cord-002994-1zjrunzc	181	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	181	13	's	's	PART
cord-002994-1zjrunzc	181	14	3′	3′	NUM
cord-002994-1zjrunzc	181	15	utr	utr	NOUN
cord-002994-1zjrunzc	181	16	was	be	AUX
cord-002994-1zjrunzc	181	17	structured	structure	VERB
cord-002994-1zjrunzc	181	18	rcs3	rcs3	ADJ
cord-002994-1zjrunzc	181	19	-	-	PUNCT
cord-002994-1zjrunzc	181	20	cs3	cs3	ADJ
cord-002994-1zjrunzc	181	21	-	-	PUNCT
cord-002994-1zjrunzc	181	22	rcs2	rcs2	ADJ
cord-002994-1zjrunzc	181	23	-	-	PUNCT
cord-002994-1zjrunzc	181	24	cs2	cs2	NOUN
cord-002994-1zjrunzc	181	25	-	-	PUNCT
cord-002994-1zjrunzc	181	26	imcs1	imcs1	NOUN
cord-002994-1zjrunzc	181	27	.	.	PUNCT
cord-002994-1zjrunzc	182	1	indeed	indeed	ADV
cord-002994-1zjrunzc	182	2	,	,	PUNCT
cord-002994-1zjrunzc	182	3	cs1	cs1	PROPN
cord-002994-1zjrunzc	182	4	was	be	AUX
cord-002994-1zjrunzc	182	5	imperfect	imperfect	ADJ
cord-002994-1zjrunzc	182	6	(	(	PUNCT
cord-002994-1zjrunzc	182	7	imcs1	imcs1	NOUN
cord-002994-1zjrunzc	182	8	)	)	PUNCT
cord-002994-1zjrunzc	182	9	only	only	ADV
cord-002994-1zjrunzc	182	10	on	on	ADP
cord-002994-1zjrunzc	182	11	sequences	sequence	NOUN
cord-002994-1zjrunzc	182	12	of	of	ADP
cord-002994-1zjrunzc	182	13	west	west	PROPN
cord-002994-1zjrunzc	182	14	african	african	ADJ
cord-002994-1zjrunzc	182	15	bagv	bagv	PROPN
cord-002994-1zjrunzc	182	16	isolates	isolate	VERB
cord-002994-1zjrunzc	182	17	with	with	ADP
cord-002994-1zjrunzc	182	18	a	a	DET
cord-002994-1zjrunzc	182	19	total	total	NOUN
cord-002994-1zjrunzc	182	20	of	of	ADP
cord-002994-1zjrunzc	182	21	nine	nine	NUM
cord-002994-1zjrunzc	182	22	substitutions	substitution	NOUN
cord-002994-1zjrunzc	182	23	compared	compare	VERB
cord-002994-1zjrunzc	182	24	to	to	ADP
cord-002994-1zjrunzc	182	25	the	the	DET
cord-002994-1zjrunzc	182	26	corresponding	corresponding	ADJ
cord-002994-1zjrunzc	182	27	consensus	consensus	NOUN
cord-002994-1zjrunzc	182	28	sequence	sequence	NOUN
cord-002994-1zjrunzc	182	29	previously	previously	ADV
cord-002994-1zjrunzc	182	30	described	describe	VERB
cord-002994-1zjrunzc	182	31	[	[	SYM
cord-002994-1zjrunzc	182	32	3	3	NUM
cord-002994-1zjrunzc	182	33	]	]	PUNCT
cord-002994-1zjrunzc	182	34	.	.	PUNCT
cord-002994-1zjrunzc	183	1	the	the	DET
cord-002994-1zjrunzc	183	2	bayesian	bayesian	NOUN
cord-002994-1zjrunzc	183	3	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	183	4	analysis	analysis	NOUN
cord-002994-1zjrunzc	183	5	for	for	ADP
cord-002994-1zjrunzc	183	6	estimation	estimation	NOUN
cord-002994-1zjrunzc	183	7	of	of	ADP
cord-002994-1zjrunzc	183	8	data	datum	NOUN
cord-002994-1zjrunzc	183	9	quality	quality	NOUN
cord-002994-1zjrunzc	183	10	and	and	CCONJ
cord-002994-1zjrunzc	183	11	selection	selection	NOUN
cord-002994-1zjrunzc	183	12	of	of	ADP
cord-002994-1zjrunzc	183	13	the	the	DET
cord-002994-1zjrunzc	183	14	best	well	ADV
cord-002994-1zjrunzc	183	15	-	-	PUNCT
cord-002994-1zjrunzc	183	16	fit	fit	ADJ
cord-002994-1zjrunzc	183	17	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	183	18	substitution	substitution	NOUN
cord-002994-1zjrunzc	183	19	model	model	NOUN
cord-002994-1zjrunzc	183	20	were	be	AUX
cord-002994-1zjrunzc	183	21	performed	perform	VERB
cord-002994-1zjrunzc	183	22	using	use	VERB
cord-002994-1zjrunzc	183	23	mega	mega	NOUN
cord-002994-1zjrunzc	183	24	6.0	6.0	NUM
cord-002994-1zjrunzc	183	25	with	with	ADP
cord-002994-1zjrunzc	183	26	a	a	DET
cord-002994-1zjrunzc	183	27	discrete	discrete	ADJ
cord-002994-1zjrunzc	183	28	gamma	gamma	NOUN
cord-002994-1zjrunzc	183	29	distribution	distribution	NOUN
cord-002994-1zjrunzc	183	30	(	(	PUNCT
cord-002994-1zjrunzc	183	31	+	+	X
cord-002994-1zjrunzc	183	32	g	g	NOUN
cord-002994-1zjrunzc	183	33	)	)	PUNCT
cord-002994-1zjrunzc	183	34	with	with	ADP
cord-002994-1zjrunzc	183	35	5	5	NUM
cord-002994-1zjrunzc	183	36	rate	rate	NOUN
cord-002994-1zjrunzc	183	37	categories	category	NOUN
cord-002994-1zjrunzc	183	38	.	.	PUNCT
cord-002994-1zjrunzc	184	1	the	the	DET
cord-002994-1zjrunzc	184	2	general	general	ADJ
cord-002994-1zjrunzc	184	3	time	time	NOUN
cord-002994-1zjrunzc	184	4	-	-	PUNCT
cord-002994-1zjrunzc	184	5	reversible	reversible	ADJ
cord-002994-1zjrunzc	184	6	with	with	ADP
cord-002994-1zjrunzc	184	7	a	a	DET
cord-002994-1zjrunzc	184	8	discrete	discrete	ADJ
cord-002994-1zjrunzc	184	9	gamma	gamma	NOUN
cord-002994-1zjrunzc	184	10	distribution	distribution	NOUN
cord-002994-1zjrunzc	184	11	and	and	CCONJ
cord-002994-1zjrunzc	184	12	a	a	DET
cord-002994-1zjrunzc	184	13	proportion	proportion	NOUN
cord-002994-1zjrunzc	184	14	of	of	ADP
cord-002994-1zjrunzc	184	15	invariant	invariant	ADJ
cord-002994-1zjrunzc	184	16	sites	site	NOUN
cord-002994-1zjrunzc	184	17	(	(	PUNCT
cord-002994-1zjrunzc	184	18	gtr+i	gtr+i	PROPN
cord-002994-1zjrunzc	184	19	)	)	PUNCT
cord-002994-1zjrunzc	184	20	was	be	AUX
cord-002994-1zjrunzc	184	21	the	the	DET
cord-002994-1zjrunzc	184	22	best	good	ADJ
cord-002994-1zjrunzc	184	23	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	184	24	substitution	substitution	NOUN
cord-002994-1zjrunzc	184	25	model	model	NOUN
cord-002994-1zjrunzc	184	26	for	for	ADP
cord-002994-1zjrunzc	184	27	our	our	PRON
cord-002994-1zjrunzc	184	28	sequences	sequence	NOUN
cord-002994-1zjrunzc	184	29	data	datum	NOUN
cord-002994-1zjrunzc	184	30	presenting	present	VERB
cord-002994-1zjrunzc	184	31	score	score	NOUN
cord-002994-1zjrunzc	184	32	values	value	NOUN
cord-002994-1zjrunzc	184	33	of	of	ADP
cord-002994-1zjrunzc	184	34	69	69	NUM
cord-002994-1zjrunzc	184	35	the	the	DET
cord-002994-1zjrunzc	184	36	bayesian	bayesian	NOUN
cord-002994-1zjrunzc	184	37	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	184	38	analysis	analysis	NOUN
cord-002994-1zjrunzc	184	39	for	for	ADP
cord-002994-1zjrunzc	184	40	estimation	estimation	NOUN
cord-002994-1zjrunzc	184	41	of	of	ADP
cord-002994-1zjrunzc	184	42	data	datum	NOUN
cord-002994-1zjrunzc	184	43	quality	quality	NOUN
cord-002994-1zjrunzc	184	44	and	and	CCONJ
cord-002994-1zjrunzc	184	45	selection	selection	NOUN
cord-002994-1zjrunzc	184	46	of	of	ADP
cord-002994-1zjrunzc	184	47	the	the	DET
cord-002994-1zjrunzc	184	48	best	well	ADV
cord-002994-1zjrunzc	184	49	-	-	PUNCT
cord-002994-1zjrunzc	184	50	fit	fit	ADJ
cord-002994-1zjrunzc	184	51	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	184	52	substitution	substitution	NOUN
cord-002994-1zjrunzc	184	53	model	model	NOUN
cord-002994-1zjrunzc	184	54	were	be	AUX
cord-002994-1zjrunzc	184	55	performed	perform	VERB
cord-002994-1zjrunzc	184	56	using	use	VERB
cord-002994-1zjrunzc	184	57	mega	mega	NOUN
cord-002994-1zjrunzc	184	58	6.0	6.0	NUM
cord-002994-1zjrunzc	184	59	with	with	ADP
cord-002994-1zjrunzc	184	60	a	a	DET
cord-002994-1zjrunzc	184	61	discrete	discrete	ADJ
cord-002994-1zjrunzc	184	62	gamma	gamma	NOUN
cord-002994-1zjrunzc	184	63	distribution	distribution	NOUN
cord-002994-1zjrunzc	184	64	(	(	PUNCT
cord-002994-1zjrunzc	184	65	+	+	X
cord-002994-1zjrunzc	184	66	g	g	NOUN
cord-002994-1zjrunzc	184	67	)	)	PUNCT
cord-002994-1zjrunzc	184	68	with	with	ADP
cord-002994-1zjrunzc	184	69	5	5	NUM
cord-002994-1zjrunzc	184	70	rate	rate	NOUN
cord-002994-1zjrunzc	184	71	categories	category	NOUN
cord-002994-1zjrunzc	184	72	.	.	PUNCT
cord-002994-1zjrunzc	185	1	the	the	DET
cord-002994-1zjrunzc	185	2	general	general	ADJ
cord-002994-1zjrunzc	185	3	time	time	NOUN
cord-002994-1zjrunzc	185	4	-	-	PUNCT
cord-002994-1zjrunzc	185	5	reversible	reversible	ADJ
cord-002994-1zjrunzc	185	6	with	with	ADP
cord-002994-1zjrunzc	185	7	a	a	DET
cord-002994-1zjrunzc	185	8	discrete	discrete	ADJ
cord-002994-1zjrunzc	185	9	gamma	gamma	NOUN
cord-002994-1zjrunzc	185	10	distribution	distribution	NOUN
cord-002994-1zjrunzc	185	11	and	and	CCONJ
cord-002994-1zjrunzc	185	12	a	a	DET
cord-002994-1zjrunzc	185	13	proportion	proportion	NOUN
cord-002994-1zjrunzc	185	14	of	of	ADP
cord-002994-1zjrunzc	185	15	invariant	invariant	ADJ
cord-002994-1zjrunzc	185	16	sites	site	NOUN
cord-002994-1zjrunzc	185	17	(	(	PUNCT
cord-002994-1zjrunzc	185	18	gtr+i	gtr+i	PROPN
cord-002994-1zjrunzc	185	19	)	)	PUNCT
cord-002994-1zjrunzc	185	20	was	be	AUX
cord-002994-1zjrunzc	185	21	the	the	DET
cord-002994-1zjrunzc	185	22	best	good	ADJ
cord-002994-1zjrunzc	185	23	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	185	24	substitution	substitution	NOUN
cord-002994-1zjrunzc	185	25	model	model	NOUN
cord-002994-1zjrunzc	185	26	for	for	ADP
cord-002994-1zjrunzc	185	27	our	our	PRON
cord-002994-1zjrunzc	185	28	sequences	sequence	NOUN
cord-002994-1zjrunzc	185	29	data	datum	NOUN
cord-002994-1zjrunzc	185	30	presenting	present	VERB
cord-002994-1zjrunzc	185	31	score	score	NOUN
cord-002994-1zjrunzc	185	32	values	value	NOUN
cord-002994-1zjrunzc	185	33	of	of	ADP
cord-002994-1zjrunzc	185	34	69,924.128	69,924.128	NUM
cord-002994-1zjrunzc	185	35	,	,	PUNCT
cord-002994-1zjrunzc	185	36	69,453.449	69,453.449	NUM
cord-002994-1zjrunzc	185	37	and	and	CCONJ
cord-002994-1zjrunzc	185	38	−34,680.714	−34,680.714	NOUN
cord-002994-1zjrunzc	185	39	for	for	ADP
cord-002994-1zjrunzc	185	40	bic	bic	NOUN
cord-002994-1zjrunzc	185	41	,	,	PUNCT
cord-002994-1zjrunzc	185	42	aicc	aicc	NOUN
cord-002994-1zjrunzc	185	43	and	and	CCONJ
cord-002994-1zjrunzc	185	44	lnl	lnl	ADJ
cord-002994-1zjrunzc	185	45	criteria	criterion	NOUN
cord-002994-1zjrunzc	185	46	,	,	PUNCT
cord-002994-1zjrunzc	185	47	respectively	respectively	ADV
cord-002994-1zjrunzc	185	48	.	.	PUNCT
cord-002994-1zjrunzc	186	1	the	the	DET
cord-002994-1zjrunzc	186	2	maximum	maximum	ADJ
cord-002994-1zjrunzc	186	3	likelihood	likelihood	NOUN
cord-002994-1zjrunzc	186	4	(	(	PUNCT
cord-002994-1zjrunzc	186	5	ml	ml	PROPN
cord-002994-1zjrunzc	186	6	)	)	PUNCT
cord-002994-1zjrunzc	186	7	tree	tree	NOUN
cord-002994-1zjrunzc	186	8	was	be	AUX
cord-002994-1zjrunzc	186	9	inferred	infer	VERB
cord-002994-1zjrunzc	186	10	using	use	VERB
cord-002994-1zjrunzc	186	11	fasttree	fasttree	NOUN
cord-002994-1zjrunzc	186	12	v2.1.7	v2.1.7	NOUN
cord-002994-1zjrunzc	187	1	[	[	PUNCT
cord-002994-1zjrunzc	187	2	26	26	NUM
cord-002994-1zjrunzc	187	3	]	]	PUNCT
cord-002994-1zjrunzc	187	4	on	on	ADP
cord-002994-1zjrunzc	187	5	our	our	PRON
cord-002994-1zjrunzc	187	6	total	total	ADJ
cord-002994-1zjrunzc	187	7	data	datum	NOUN
cord-002994-1zjrunzc	187	8	set	set	NOUN
cord-002994-1zjrunzc	187	9	including	include	VERB
cord-002994-1zjrunzc	187	10	the	the	DET
cord-002994-1zjrunzc	187	11	11	11	NUM
cord-002994-1zjrunzc	187	12	complete	complete	ADJ
cord-002994-1zjrunzc	187	13	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	187	14	sequences	sequence	NOUN
cord-002994-1zjrunzc	187	15	of	of	ADP
cord-002994-1zjrunzc	187	16	west	west	PROPN
cord-002994-1zjrunzc	187	17	african	african	ADJ
cord-002994-1zjrunzc	187	18	bagv	bagv	PROPN
cord-002994-1zjrunzc	187	19	isolates	isolate	VERB
cord-002994-1zjrunzc	187	20	circulating	circulate	VERB
cord-002994-1zjrunzc	187	21	in	in	ADP
cord-002994-1zjrunzc	187	22	senegal	senegal	PROPN
cord-002994-1zjrunzc	187	23	and	and	CCONJ
cord-002994-1zjrunzc	187	24	côte	côte	X
cord-002994-1zjrunzc	187	25	d'ivoire	d'ivoire	PROPN
cord-002994-1zjrunzc	187	26	from	from	ADP
cord-002994-1zjrunzc	187	27	1988	1988	NUM
cord-002994-1zjrunzc	187	28	to	to	ADP
cord-002994-1zjrunzc	187	29	2014	2014	NUM
cord-002994-1zjrunzc	187	30	,	,	PUNCT
cord-002994-1zjrunzc	187	31	the	the	DET
cord-002994-1zjrunzc	187	32	5	5	NUM
cord-002994-1zjrunzc	187	33	bagv	bagv	NOUN
cord-002994-1zjrunzc	187	34	sequences	sequence	NOUN
cord-002994-1zjrunzc	187	35	from	from	ADP
cord-002994-1zjrunzc	187	36	spain	spain	PROPN
cord-002994-1zjrunzc	187	37	,	,	PUNCT
cord-002994-1zjrunzc	187	38	the	the	DET
cord-002994-1zjrunzc	187	39	bagv	bagv	PROPN
cord-002994-1zjrunzc	187	40	sequences	sequence	VERB
cord-002994-1zjrunzc	187	41	from	from	ADP
cord-002994-1zjrunzc	187	42	india	india	PROPN
cord-002994-1zjrunzc	187	43	and	and	CCONJ
cord-002994-1zjrunzc	187	44	car	car	NOUN
cord-002994-1zjrunzc	187	45	and	and	CCONJ
cord-002994-1zjrunzc	187	46	complete	complete	ADJ
cord-002994-1zjrunzc	187	47	polyproteins	polyprotein	NOUN
cord-002994-1zjrunzc	187	48	from	from	ADP
cord-002994-1zjrunzc	187	49	different	different	ADJ
cord-002994-1zjrunzc	187	50	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	187	51	,	,	PUNCT
cord-002994-1zjrunzc	187	52	with	with	ADP
cord-002994-1zjrunzc	187	53	10,281	10,281	NUM
cord-002994-1zjrunzc	187	54	bp	bp	PROPN
cord-002994-1zjrunzc	187	55	alignment	alignment	NOUN
cord-002994-1zjrunzc	187	56	length	length	NOUN
cord-002994-1zjrunzc	187	57	(	(	PUNCT
cord-002994-1zjrunzc	187	58	figure	figure	NOUN
cord-002994-1zjrunzc	187	59	5	5	NUM
cord-002994-1zjrunzc	187	60	)	)	PUNCT
cord-002994-1zjrunzc	187	61	.	.	PUNCT
cord-002994-1zjrunzc	188	1	a	a	DET
cord-002994-1zjrunzc	188	2	gtr+i	gtr+i	PROPN
cord-002994-1zjrunzc	188	3	model	model	NOUN
cord-002994-1zjrunzc	188	4	was	be	AUX
cord-002994-1zjrunzc	188	5	used	use	VERB
cord-002994-1zjrunzc	188	6	,	,	PUNCT
cord-002994-1zjrunzc	188	7	as	as	SCONJ
cord-002994-1zjrunzc	188	8	selected	select	VERB
cord-002994-1zjrunzc	188	9	by	by	ADP
cord-002994-1zjrunzc	188	10	bayesian	bayesian	PROPN
cord-002994-1zjrunzc	188	11	criteria	criterion	NOUN
cord-002994-1zjrunzc	188	12	.	.	PUNCT
cord-002994-1zjrunzc	189	1	nodes	node	NOUN
cord-002994-1zjrunzc	189	2	were	be	AUX
cord-002994-1zjrunzc	189	3	labeled	label	VERB
cord-002994-1zjrunzc	189	4	with	with	ADP
cord-002994-1zjrunzc	189	5	local	local	ADJ
cord-002994-1zjrunzc	189	6	support	support	NOUN
cord-002994-1zjrunzc	189	7	values	value	NOUN
cord-002994-1zjrunzc	189	8	computed	compute	VERB
cord-002994-1zjrunzc	189	9	with	with	ADP
cord-002994-1zjrunzc	189	10	5000	5000	NUM
cord-002994-1zjrunzc	189	11	bootstrap	bootstrap	NOUN
cord-002994-1zjrunzc	189	12	replications	replication	NOUN
cord-002994-1zjrunzc	189	13	using	use	VERB
cord-002994-1zjrunzc	189	14	the	the	DET
cord-002994-1zjrunzc	189	15	shimodaira	shimodaira	PROPN
cord-002994-1zjrunzc	189	16	-	-	PUNCT
cord-002994-1zjrunzc	189	17	hasegawa	hasegawa	PROPN
cord-002994-1zjrunzc	189	18	(	(	PUNCT
cord-002994-1zjrunzc	189	19	sh	sh	PROPN
cord-002994-1zjrunzc	189	20	)	)	PUNCT
cord-002994-1zjrunzc	189	21	test	test	NOUN
cord-002994-1zjrunzc	189	22	.	.	PUNCT
cord-002994-1zjrunzc	190	1	the	the	DET
cord-002994-1zjrunzc	190	2	phylogeny	phylogeny	NOUN
cord-002994-1zjrunzc	190	3	of	of	ADP
cord-002994-1zjrunzc	190	4	complete	complete	ADJ
cord-002994-1zjrunzc	190	5	bagv	bagv	PROPN
cord-002994-1zjrunzc	190	6	genome	genome	PROPN
cord-002994-1zjrunzc	190	7	sequences	sequence	NOUN
cord-002994-1zjrunzc	190	8	presented	present	VERB
cord-002994-1zjrunzc	190	9	evidence	evidence	NOUN
cord-002994-1zjrunzc	190	10	of	of	ADP
cord-002994-1zjrunzc	190	11	a	a	DET
cord-002994-1zjrunzc	190	12	single	single	ADJ
cord-002994-1zjrunzc	190	13	bagv	bagv	NOUN
cord-002994-1zjrunzc	190	14	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	190	15	group	group	NOUN
cord-002994-1zjrunzc	190	16	.	.	PUNCT
cord-002994-1zjrunzc	191	1	furthermore	furthermore	ADV
cord-002994-1zjrunzc	191	2	,	,	PUNCT
cord-002994-1zjrunzc	191	3	we	we	PRON
cord-002994-1zjrunzc	191	4	observed	observe	VERB
cord-002994-1zjrunzc	191	5	also	also	ADV
cord-002994-1zjrunzc	191	6	that	that	SCONJ
cord-002994-1zjrunzc	191	7	israel	israel	PROPN
cord-002994-1zjrunzc	191	8	meningo	meningo	PROPN
cord-002994-1zjrunzc	191	9	-	-	PUNCT
cord-002994-1zjrunzc	191	10	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	191	11	turkey	turkey	NOUN
cord-002994-1zjrunzc	191	12	virus	virus	PROPN
cord-002994-1zjrunzc	191	13	(	(	PUNCT
cord-002994-1zjrunzc	191	14	itv	itv	PROPN
cord-002994-1zjrunzc	191	15	)	)	PUNCT
cord-002994-1zjrunzc	191	16	was	be	AUX
cord-002994-1zjrunzc	191	17	closed	close	VERB
cord-002994-1zjrunzc	191	18	to	to	ADP
cord-002994-1zjrunzc	191	19	bagv	bagv	NOUN
cord-002994-1zjrunzc	191	20	in	in	ADP
cord-002994-1zjrunzc	191	21	genetic	genetic	ADJ
cord-002994-1zjrunzc	191	22	relatedness	relatedness	NOUN
cord-002994-1zjrunzc	191	23	[	[	X
cord-002994-1zjrunzc	191	24	11	11	NUM
cord-002994-1zjrunzc	191	25	]	]	PUNCT
cord-002994-1zjrunzc	191	26	.	.	PUNCT
cord-002994-1zjrunzc	192	1	viruses	virus	NOUN
cord-002994-1zjrunzc	192	2	2018	2018	NUM
cord-002994-1zjrunzc	192	3	,	,	PUNCT
cord-002994-1zjrunzc	192	4	10	10	NUM
cord-002994-1zjrunzc	192	5	,	,	PUNCT
cord-002994-1zjrunzc	192	6	x	x	NUM
cord-002994-1zjrunzc	192	7	13	13	NUM
cord-002994-1zjrunzc	192	8	of	of	ADP
cord-002994-1zjrunzc	192	9	26	26	NUM
cord-002994-1zjrunzc	192	10	respectively	respectively	ADV
cord-002994-1zjrunzc	192	11	.	.	PUNCT
cord-002994-1zjrunzc	193	1	the	the	DET
cord-002994-1zjrunzc	193	2	maximum	maximum	ADJ
cord-002994-1zjrunzc	193	3	likelihood	likelihood	NOUN
cord-002994-1zjrunzc	193	4	(	(	PUNCT
cord-002994-1zjrunzc	193	5	ml	ml	PROPN
cord-002994-1zjrunzc	193	6	)	)	PUNCT
cord-002994-1zjrunzc	193	7	tree	tree	NOUN
cord-002994-1zjrunzc	193	8	was	be	AUX
cord-002994-1zjrunzc	193	9	inferred	infer	VERB
cord-002994-1zjrunzc	193	10	using	use	VERB
cord-002994-1zjrunzc	193	11	fasttree	fasttree	NOUN
cord-002994-1zjrunzc	193	12	v2.1.7	v2.1.7	NOUN
cord-002994-1zjrunzc	194	1	[	[	PUNCT
cord-002994-1zjrunzc	194	2	26	26	NUM
cord-002994-1zjrunzc	194	3	]	]	PUNCT
cord-002994-1zjrunzc	194	4	on	on	ADP
cord-002994-1zjrunzc	194	5	our	our	PRON
cord-002994-1zjrunzc	194	6	total	total	ADJ
cord-002994-1zjrunzc	194	7	data	datum	NOUN
cord-002994-1zjrunzc	194	8	set	set	NOUN
cord-002994-1zjrunzc	194	9	including	include	VERB
cord-002994-1zjrunzc	194	10	the	the	DET
cord-002994-1zjrunzc	194	11	11	11	NUM
cord-002994-1zjrunzc	194	12	complete	complete	ADJ
cord-002994-1zjrunzc	194	13	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	194	14	sequences	sequence	NOUN
cord-002994-1zjrunzc	194	15	of	of	ADP
cord-002994-1zjrunzc	194	16	west	west	PROPN
cord-002994-1zjrunzc	194	17	african	african	ADJ
cord-002994-1zjrunzc	194	18	bagv	bagv	PROPN
cord-002994-1zjrunzc	194	19	isolates	isolate	VERB
cord-002994-1zjrunzc	194	20	circulating	circulate	VERB
cord-002994-1zjrunzc	194	21	in	in	ADP
cord-002994-1zjrunzc	194	22	senegal	senegal	PROPN
cord-002994-1zjrunzc	194	23	and	and	CCONJ
cord-002994-1zjrunzc	194	24	côte	côte	X
cord-002994-1zjrunzc	194	25	d'ivoire	d'ivoire	PROPN
cord-002994-1zjrunzc	194	26	from	from	ADP
cord-002994-1zjrunzc	194	27	1988	1988	NUM
cord-002994-1zjrunzc	194	28	to	to	ADP
cord-002994-1zjrunzc	194	29	2014	2014	NUM
cord-002994-1zjrunzc	194	30	,	,	PUNCT
cord-002994-1zjrunzc	194	31	the	the	DET
cord-002994-1zjrunzc	194	32	5	5	NUM
cord-002994-1zjrunzc	194	33	bagv	bagv	NOUN
cord-002994-1zjrunzc	194	34	sequences	sequence	NOUN
cord-002994-1zjrunzc	194	35	from	from	ADP
cord-002994-1zjrunzc	194	36	spain	spain	PROPN
cord-002994-1zjrunzc	194	37	,	,	PUNCT
cord-002994-1zjrunzc	194	38	the	the	DET
cord-002994-1zjrunzc	194	39	bagv	bagv	PROPN
cord-002994-1zjrunzc	194	40	sequences	sequence	VERB
cord-002994-1zjrunzc	194	41	from	from	ADP
cord-002994-1zjrunzc	194	42	india	india	PROPN
cord-002994-1zjrunzc	194	43	and	and	CCONJ
cord-002994-1zjrunzc	194	44	car	car	NOUN
cord-002994-1zjrunzc	194	45	and	and	CCONJ
cord-002994-1zjrunzc	194	46	complete	complete	ADJ
cord-002994-1zjrunzc	194	47	polyproteins	polyprotein	NOUN
cord-002994-1zjrunzc	194	48	from	from	ADP
cord-002994-1zjrunzc	194	49	different	different	ADJ
cord-002994-1zjrunzc	194	50	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	194	51	,	,	PUNCT
cord-002994-1zjrunzc	194	52	with	with	ADP
cord-002994-1zjrunzc	194	53	10,281	10,281	NUM
cord-002994-1zjrunzc	194	54	bp	bp	PROPN
cord-002994-1zjrunzc	194	55	alignment	alignment	NOUN
cord-002994-1zjrunzc	194	56	length	length	NOUN
cord-002994-1zjrunzc	194	57	(	(	PUNCT
cord-002994-1zjrunzc	194	58	figure	figure	NOUN
cord-002994-1zjrunzc	194	59	5	5	NUM
cord-002994-1zjrunzc	194	60	)	)	PUNCT
cord-002994-1zjrunzc	194	61	.	.	PUNCT
cord-002994-1zjrunzc	195	1	a	a	DET
cord-002994-1zjrunzc	195	2	gtr+i	gtr+i	PROPN
cord-002994-1zjrunzc	195	3	model	model	NOUN
cord-002994-1zjrunzc	195	4	was	be	AUX
cord-002994-1zjrunzc	195	5	used	use	VERB
cord-002994-1zjrunzc	195	6	,	,	PUNCT
cord-002994-1zjrunzc	195	7	as	as	SCONJ
cord-002994-1zjrunzc	195	8	selected	select	VERB
cord-002994-1zjrunzc	195	9	by	by	ADP
cord-002994-1zjrunzc	195	10	bayesian	bayesian	PROPN
cord-002994-1zjrunzc	195	11	criteria	criterion	NOUN
cord-002994-1zjrunzc	195	12	.	.	PUNCT
cord-002994-1zjrunzc	196	1	nodes	node	NOUN
cord-002994-1zjrunzc	196	2	were	be	AUX
cord-002994-1zjrunzc	196	3	labeled	label	VERB
cord-002994-1zjrunzc	196	4	with	with	ADP
cord-002994-1zjrunzc	196	5	local	local	ADJ
cord-002994-1zjrunzc	196	6	support	support	NOUN
cord-002994-1zjrunzc	196	7	values	value	NOUN
cord-002994-1zjrunzc	196	8	computed	compute	VERB
cord-002994-1zjrunzc	196	9	with	with	ADP
cord-002994-1zjrunzc	196	10	5000	5000	NUM
cord-002994-1zjrunzc	196	11	bootstrap	bootstrap	NOUN
cord-002994-1zjrunzc	196	12	replications	replication	NOUN
cord-002994-1zjrunzc	196	13	using	use	VERB
cord-002994-1zjrunzc	196	14	the	the	DET
cord-002994-1zjrunzc	196	15	shimodaira	shimodaira	PROPN
cord-002994-1zjrunzc	196	16	-	-	PUNCT
cord-002994-1zjrunzc	196	17	hasegawa	hasegawa	PROPN
cord-002994-1zjrunzc	196	18	(	(	PUNCT
cord-002994-1zjrunzc	196	19	sh	sh	PROPN
cord-002994-1zjrunzc	196	20	)	)	PUNCT
cord-002994-1zjrunzc	196	21	test	test	NOUN
cord-002994-1zjrunzc	196	22	.	.	PUNCT
cord-002994-1zjrunzc	197	1	the	the	DET
cord-002994-1zjrunzc	197	2	phylogeny	phylogeny	NOUN
cord-002994-1zjrunzc	197	3	of	of	ADP
cord-002994-1zjrunzc	197	4	complete	complete	ADJ
cord-002994-1zjrunzc	197	5	bagv	bagv	PROPN
cord-002994-1zjrunzc	197	6	genome	genome	PROPN
cord-002994-1zjrunzc	197	7	sequences	sequence	NOUN
cord-002994-1zjrunzc	197	8	presented	present	VERB
cord-002994-1zjrunzc	197	9	evidence	evidence	NOUN
cord-002994-1zjrunzc	197	10	of	of	ADP
cord-002994-1zjrunzc	197	11	a	a	DET
cord-002994-1zjrunzc	197	12	single	single	ADJ
cord-002994-1zjrunzc	197	13	bagv	bagv	NOUN
cord-002994-1zjrunzc	197	14	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	197	15	group	group	NOUN
cord-002994-1zjrunzc	197	16	.	.	PUNCT
cord-002994-1zjrunzc	198	1	furthermore	furthermore	ADV
cord-002994-1zjrunzc	198	2	,	,	PUNCT
cord-002994-1zjrunzc	198	3	we	we	PRON
cord-002994-1zjrunzc	198	4	observed	observe	VERB
cord-002994-1zjrunzc	198	5	also	also	ADV
cord-002994-1zjrunzc	198	6	that	that	SCONJ
cord-002994-1zjrunzc	198	7	israel	israel	PROPN
cord-002994-1zjrunzc	198	8	meningoencephalitis	meningoencephalitis	NOUN
cord-002994-1zjrunzc	198	9	turkey	turkey	PROPN
cord-002994-1zjrunzc	198	10	virus	virus	PROPN
cord-002994-1zjrunzc	198	11	(	(	PUNCT
cord-002994-1zjrunzc	198	12	itv	itv	PROPN
cord-002994-1zjrunzc	198	13	)	)	PUNCT
cord-002994-1zjrunzc	198	14	was	be	AUX
cord-002994-1zjrunzc	198	15	closed	close	VERB
cord-002994-1zjrunzc	198	16	to	to	ADP
cord-002994-1zjrunzc	198	17	bagv	bagv	NOUN
cord-002994-1zjrunzc	198	18	in	in	ADP
cord-002994-1zjrunzc	198	19	genetic	genetic	ADJ
cord-002994-1zjrunzc	198	20	relatedness	relatedness	NOUN
cord-002994-1zjrunzc	198	21	[	[	X
cord-002994-1zjrunzc	198	22	11	11	NUM
cord-002994-1zjrunzc	198	23	]	]	PUNCT
cord-002994-1zjrunzc	198	24	.	.	PUNCT
cord-002994-1zjrunzc	199	1	given	give	VERB
cord-002994-1zjrunzc	199	2	the	the	DET
cord-002994-1zjrunzc	199	3	major	major	ADJ
cord-002994-1zjrunzc	199	4	implications	implication	NOUN
cord-002994-1zjrunzc	199	5	of	of	ADP
cord-002994-1zjrunzc	199	6	recombination	recombination	NOUN
cord-002994-1zjrunzc	199	7	events	event	NOUN
cord-002994-1zjrunzc	199	8	for	for	ADP
cord-002994-1zjrunzc	199	9	evolution	evolution	NOUN
cord-002994-1zjrunzc	199	10	,	,	PUNCT
cord-002994-1zjrunzc	199	11	pathogenicity	pathogenicity	NOUN
cord-002994-1zjrunzc	199	12	,	,	PUNCT
cord-002994-1zjrunzc	199	13	or	or	CCONJ
cord-002994-1zjrunzc	199	14	diagnosis	diagnosis	NOUN
cord-002994-1zjrunzc	199	15	of	of	ADP
cord-002994-1zjrunzc	199	16	non	non	ADJ
cord-002994-1zjrunzc	199	17	-	-	ADJ
cord-002994-1zjrunzc	199	18	segmented	segmented	ADJ
cord-002994-1zjrunzc	199	19	positive	positive	ADJ
cord-002994-1zjrunzc	199	20	rna	rna	PROPN
cord-002994-1zjrunzc	199	21	viruses	virus	NOUN
cord-002994-1zjrunzc	199	22	like	like	ADP
cord-002994-1zjrunzc	199	23	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	199	24	[	[	PUNCT
cord-002994-1zjrunzc	199	25	44	44	NUM
cord-002994-1zjrunzc	199	26	]	]	PUNCT
cord-002994-1zjrunzc	199	27	,	,	PUNCT
cord-002994-1zjrunzc	199	28	it	it	PRON
cord-002994-1zjrunzc	199	29	is	be	AUX
cord-002994-1zjrunzc	199	30	clearly	clearly	ADV
cord-002994-1zjrunzc	199	31	important	important	ADJ
cord-002994-1zjrunzc	199	32	to	to	PART
cord-002994-1zjrunzc	199	33	determine	determine	VERB
cord-002994-1zjrunzc	199	34	their	their	PRON
cord-002994-1zjrunzc	199	35	occurrence	occurrence	NOUN
cord-002994-1zjrunzc	199	36	in	in	ADP
cord-002994-1zjrunzc	199	37	the	the	DET
cord-002994-1zjrunzc	199	38	bagv	bagv	PROPN
cord-002994-1zjrunzc	199	39	genome	genome	PROPN
cord-002994-1zjrunzc	199	40	.	.	PUNCT
cord-002994-1zjrunzc	200	1	the	the	DET
cord-002994-1zjrunzc	200	2	rdp4beta	rdp4beta	PROPN
cord-002994-1zjrunzc	200	3	4.8	4.8	NUM
cord-002994-1zjrunzc	200	4	program	program	NOUN
cord-002994-1zjrunzc	200	5	used	use	VERB
cord-002994-1zjrunzc	200	6	for	for	ADP
cord-002994-1zjrunzc	200	7	assessment	assessment	NOUN
cord-002994-1zjrunzc	200	8	of	of	ADP
cord-002994-1zjrunzc	200	9	recombination	recombination	NOUN
cord-002994-1zjrunzc	200	10	events	event	NOUN
cord-002994-1zjrunzc	200	11	on	on	ADP
cord-002994-1zjrunzc	200	12	complete	complete	ADJ
cord-002994-1zjrunzc	200	13	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	200	14	sequences	sequence	NOUN
cord-002994-1zjrunzc	200	15	[	[	X
cord-002994-1zjrunzc	200	16	27	27	NUM
cord-002994-1zjrunzc	200	17	]	]	PUNCT
cord-002994-1zjrunzc	200	18	revealed	reveal	VERB
cord-002994-1zjrunzc	200	19	evidence	evidence	NOUN
cord-002994-1zjrunzc	200	20	of	of	ADP
cord-002994-1zjrunzc	200	21	only	only	ADV
cord-002994-1zjrunzc	200	22	one	one	NUM
cord-002994-1zjrunzc	200	23	highly	highly	ADV
cord-002994-1zjrunzc	200	24	credible	credible	ADJ
cord-002994-1zjrunzc	200	25	recombination	recombination	NOUN
cord-002994-1zjrunzc	200	26	event	event	NOUN
cord-002994-1zjrunzc	200	27	from	from	ADP
cord-002994-1zjrunzc	200	28	the	the	DET
cord-002994-1zjrunzc	200	29	e	e	NOUN
cord-002994-1zjrunzc	200	30	protein	protein	NOUN
cord-002994-1zjrunzc	200	31	to	to	ADP
cord-002994-1zjrunzc	200	32	ns2b	ns2b	PROPN
cord-002994-1zjrunzc	200	33	,	,	PUNCT
cord-002994-1zjrunzc	200	34	with	with	ADP
cord-002994-1zjrunzc	200	35	estimated	estimate	VERB
cord-002994-1zjrunzc	200	36	breakpoints	breakpoint	NOUN
cord-002994-1zjrunzc	200	37	at	at	ADP
cord-002994-1zjrunzc	200	38	positions	position	NOUN
cord-002994-1zjrunzc	200	39	2202	2202	NUM
cord-002994-1zjrunzc	200	40	and	and	CCONJ
cord-002994-1zjrunzc	200	41	4908	4908	NUM
cord-002994-1zjrunzc	200	42	of	of	ADP
cord-002994-1zjrunzc	200	43	bagv	bagv	PROPN
cord-002994-1zjrunzc	200	44	genome	genome	PROPN
cord-002994-1zjrunzc	200	45	.	.	PUNCT
cord-002994-1zjrunzc	201	1	this	this	DET
cord-002994-1zjrunzc	201	2	recombination	recombination	NOUN
cord-002994-1zjrunzc	201	3	event	event	NOUN
cord-002994-1zjrunzc	201	4	involved	involve	VERB
cord-002994-1zjrunzc	201	5	the	the	DET
cord-002994-1zjrunzc	201	6	isolate	isolate	NOUN
cord-002994-1zjrunzc	201	7	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	201	8	-	-	PUNCT
cord-002994-1zjrunzc	201	9	bango_sen_1989	bango_sen_1989	NOUN
cord-002994-1zjrunzc	201	10	originating	originate	VERB
cord-002994-1zjrunzc	201	11	from	from	ADP
cord-002994-1zjrunzc	201	12	saint	saint	PROPN
cord-002994-1zjrunzc	201	13	-	-	PUNCT
cord-002994-1zjrunzc	201	14	louis	louis	NOUN
cord-002994-1zjrunzc	201	15	,	,	PUNCT
cord-002994-1zjrunzc	201	16	in	in	ADP
cord-002994-1zjrunzc	201	17	the	the	DET
cord-002994-1zjrunzc	201	18	north	north	NOUN
cord-002994-1zjrunzc	201	19	of	of	ADP
cord-002994-1zjrunzc	201	20	senegal	senegal	PROPN
cord-002994-1zjrunzc	201	21	(	(	PUNCT
cord-002994-1zjrunzc	201	22	figure	figure	NOUN
cord-002994-1zjrunzc	201	23	6	6	NUM
cord-002994-1zjrunzc	201	24	)	)	PUNCT
cord-002994-1zjrunzc	201	25	.	.	PUNCT
cord-002994-1zjrunzc	202	1	considering	consider	VERB
cord-002994-1zjrunzc	202	2	the	the	DET
cord-002994-1zjrunzc	202	3	isolates	isolate	NOUN
cord-002994-1zjrunzc	202	4	ard260266	ard260266	NOUN
cord-002994-1zjrunzc	202	5	_	_	PUNCT
cord-002994-1zjrunzc	203	1	barkedji_sen_2014	barkedji_sen_2014	NOUN
cord-002994-1zjrunzc	203	2	and	and	CCONJ
cord-002994-1zjrunzc	203	3	ard171075_barkedji_sen_2004	ard171075_barkedji_sen_2004	NOUN
cord-002994-1zjrunzc	203	4	as	as	ADP
cord-002994-1zjrunzc	203	5	respective	respective	ADJ
cord-002994-1zjrunzc	203	6	minor	minor	ADJ
cord-002994-1zjrunzc	203	7	and	and	CCONJ
cord-002994-1zjrunzc	203	8	major	major	ADJ
cord-002994-1zjrunzc	203	9	parents	parent	NOUN
cord-002994-1zjrunzc	203	10	of	of	ADP
cord-002994-1zjrunzc	203	11	the	the	DET
cord-002994-1zjrunzc	203	12	isolate	isolate	NOUN
cord-002994-1zjrunzc	203	13	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	203	14	-	-	PUNCT
cord-002994-1zjrunzc	203	15	bango_sen_1989	bango_sen_1989	NOUN
cord-002994-1zjrunzc	203	16	(	(	PUNCT
cord-002994-1zjrunzc	203	17	similarity	similarity	NOUN
cord-002994-1zjrunzc	203	18	of	of	ADP
cord-002994-1zjrunzc	203	19	98.8	98.8	NUM
cord-002994-1zjrunzc	203	20	%	%	NOUN
cord-002994-1zjrunzc	203	21	and	and	CCONJ
cord-002994-1zjrunzc	203	22	97	97	NUM
cord-002994-1zjrunzc	203	23	%	%	NOUN
cord-002994-1zjrunzc	203	24	,	,	PUNCT
cord-002994-1zjrunzc	203	25	respectively	respectively	ADV
cord-002994-1zjrunzc	203	26	)	)	PUNCT
cord-002994-1zjrunzc	203	27	,	,	PUNCT
cord-002994-1zjrunzc	203	28	this	this	DET
cord-002994-1zjrunzc	203	29	recombination	recombination	NOUN
cord-002994-1zjrunzc	203	30	event	event	NOUN
cord-002994-1zjrunzc	203	31	was	be	AUX
cord-002994-1zjrunzc	203	32	found	find	VERB
cord-002994-1zjrunzc	203	33	by	by	ADP
cord-002994-1zjrunzc	203	34	rdp	rdp	PROPN
cord-002994-1zjrunzc	203	35	,	,	PUNCT
cord-002994-1zjrunzc	203	36	geneconv	geneconv	PROPN
cord-002994-1zjrunzc	203	37	,	,	PUNCT
cord-002994-1zjrunzc	203	38	bootscan	bootscan	PROPN
cord-002994-1zjrunzc	203	39	,	,	PUNCT
cord-002994-1zjrunzc	203	40	maxchi	maxchi	PROPN
cord-002994-1zjrunzc	203	41	,	,	PUNCT
cord-002994-1zjrunzc	203	42	chimaera	chimaera	PROPN
cord-002994-1zjrunzc	203	43	,	,	PUNCT
cord-002994-1zjrunzc	203	44	sisscan	sisscan	ADJ
cord-002994-1zjrunzc	203	45	and	and	CCONJ
cord-002994-1zjrunzc	203	46	3seq	3seq	NUM
cord-002994-1zjrunzc	203	47	methods	method	NOUN
cord-002994-1zjrunzc	203	48	and	and	CCONJ
cord-002994-1zjrunzc	203	49	supported	support	VERB
cord-002994-1zjrunzc	203	50	by	by	ADP
cord-002994-1zjrunzc	203	51	significant	significant	ADJ
cord-002994-1zjrunzc	203	52	p	p	NOUN
cord-002994-1zjrunzc	203	53	-	-	NOUN
cord-002994-1zjrunzc	203	54	values	value	NOUN
cord-002994-1zjrunzc	203	55	of	of	ADP
cord-002994-1zjrunzc	203	56	3.09	3.09	NUM
cord-002994-1zjrunzc	203	57	×	×	NOUN
cord-002994-1zjrunzc	203	58	10	10	NUM
cord-002994-1zjrunzc	203	59	-16	-16	NUM
cord-002994-1zjrunzc	203	60	,	,	PUNCT
cord-002994-1zjrunzc	203	61	9.23	9.23	NUM
cord-002994-1zjrunzc	203	62	×	×	NOUN
cord-002994-1zjrunzc	203	63	10	10	NUM
cord-002994-1zjrunzc	203	64	−12	−12	NOUN
cord-002994-1zjrunzc	203	65	,	,	PUNCT
cord-002994-1zjrunzc	203	66	7.36	7.36	NUM
cord-002994-1zjrunzc	203	67	×	×	NOUN
cord-002994-1zjrunzc	203	68	10	10	NUM
cord-002994-1zjrunzc	203	69	−13	−13	PROPN
cord-002994-1zjrunzc	203	70	,	,	PUNCT
cord-002994-1zjrunzc	203	71	8.45	8.45	NUM
cord-002994-1zjrunzc	203	72	×	×	NOUN
cord-002994-1zjrunzc	203	73	10	10	NUM
cord-002994-1zjrunzc	203	74	−7	−7	NOUN
cord-002994-1zjrunzc	203	75	,	,	PUNCT
cord-002994-1zjrunzc	203	76	1.59	1.59	NUM
cord-002994-1zjrunzc	203	77	×	×	NOUN
cord-002994-1zjrunzc	203	78	10	10	NUM
cord-002994-1zjrunzc	203	79	−7	−7	NOUN
cord-002994-1zjrunzc	203	80	,	,	PUNCT
cord-002994-1zjrunzc	203	81	3.60	3.60	NUM
cord-002994-1zjrunzc	203	82	×	×	NOUN
cord-002994-1zjrunzc	203	83	10	10	NUM
cord-002994-1zjrunzc	203	84	−8	−8	NOUN
cord-002994-1zjrunzc	203	85	and	and	CCONJ
cord-002994-1zjrunzc	203	86	1.17	1.17	NUM
cord-002994-1zjrunzc	203	87	×	×	NOUN
cord-002994-1zjrunzc	203	88	10	10	NUM
cord-002994-1zjrunzc	203	89	−12	−12	PROPN
cord-002994-1zjrunzc	203	90	,	,	PUNCT
cord-002994-1zjrunzc	203	91	respectively	respectively	ADV
cord-002994-1zjrunzc	203	92	.	.	PUNCT
cord-002994-1zjrunzc	204	1	the	the	DET
cord-002994-1zjrunzc	204	2	bootscan	bootscan	PROPN
cord-002994-1zjrunzc	204	3	and	and	CCONJ
cord-002994-1zjrunzc	204	4	gard	gard	NOUN
cord-002994-1zjrunzc	204	5	analyzes	analyzes	AUX
cord-002994-1zjrunzc	204	6	identified	identify	VERB
cord-002994-1zjrunzc	204	7	one	one	NUM
cord-002994-1zjrunzc	204	8	significant	significant	ADJ
cord-002994-1zjrunzc	204	9	recombination	recombination	NOUN
cord-002994-1zjrunzc	204	10	breakpoint	breakpoint	NOUN
cord-002994-1zjrunzc	204	11	at	at	ADP
cord-002994-1zjrunzc	204	12	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	204	13	position	position	NOUN
cord-002994-1zjrunzc	204	14	2201	2201	NUM
cord-002994-1zjrunzc	204	15	corresponding	correspond	VERB
cord-002994-1zjrunzc	204	16	to	to	ADP
cord-002994-1zjrunzc	204	17	the	the	DET
cord-002994-1zjrunzc	204	18	e	e	PROPN
cord-002994-1zjrunzc	204	19	protein	protein	NOUN
cord-002994-1zjrunzc	204	20	,	,	PUNCT
cord-002994-1zjrunzc	204	21	supported	support	VERB
cord-002994-1zjrunzc	204	22	by	by	ADP
cord-002994-1zjrunzc	204	23	a	a	DET
cord-002994-1zjrunzc	204	24	lhs	lhs	PROPN
cord-002994-1zjrunzc	204	25	p	p	PROPN
cord-002994-1zjrunzc	204	26	-	-	PUNCT
cord-002994-1zjrunzc	204	27	value	value	NOUN
cord-002994-1zjrunzc	204	28	of	of	ADP
cord-002994-1zjrunzc	204	29	0.024	0.024	NUM
cord-002994-1zjrunzc	204	30	and	and	CCONJ
cord-002994-1zjrunzc	204	31	a	a	DET
cord-002994-1zjrunzc	204	32	rhs	rhs	NOUN
cord-002994-1zjrunzc	204	33	p	p	NOUN
cord-002994-1zjrunzc	204	34	-	-	NOUN
cord-002994-1zjrunzc	204	35	value	value	NOUN
cord-002994-1zjrunzc	204	36	of	of	ADP
cord-002994-1zjrunzc	204	37	0.001	0.001	NUM
cord-002994-1zjrunzc	204	38	.	.	PUNCT
cord-002994-1zjrunzc	205	1	this	this	DET
cord-002994-1zjrunzc	205	2	breakpoint	breakpoint	NOUN
cord-002994-1zjrunzc	205	3	divides	divide	VERB
cord-002994-1zjrunzc	205	4	the	the	DET
cord-002994-1zjrunzc	205	5	bagv	bagv	NOUN
cord-002994-1zjrunzc	205	6	genome	genome	NOUN
cord-002994-1zjrunzc	205	7	into	into	ADP
cord-002994-1zjrunzc	205	8	two	two	NUM
cord-002994-1zjrunzc	205	9	regions	region	NOUN
cord-002994-1zjrunzc	205	10	:	:	PUNCT
cord-002994-1zjrunzc	205	11	one	one	NUM
cord-002994-1zjrunzc	205	12	that	that	PRON
cord-002994-1zjrunzc	205	13	encodes	encode	VERB
cord-002994-1zjrunzc	205	14	the	the	DET
cord-002994-1zjrunzc	205	15	structural	structural	ADJ
cord-002994-1zjrunzc	205	16	proteins	protein	NOUN
cord-002994-1zjrunzc	205	17	and	and	CCONJ
cord-002994-1zjrunzc	205	18	another	another	PRON
cord-002994-1zjrunzc	205	19	that	that	PRON
cord-002994-1zjrunzc	205	20	encodes	encode	VERB
cord-002994-1zjrunzc	205	21	the	the	DET
cord-002994-1zjrunzc	205	22	non	non	ADJ
cord-002994-1zjrunzc	205	23	-	-	ADJ
cord-002994-1zjrunzc	205	24	structural	structural	ADJ
cord-002994-1zjrunzc	205	25	proteins	protein	NOUN
cord-002994-1zjrunzc	205	26	.	.	PUNCT
cord-002994-1zjrunzc	206	1	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	206	2	trees	tree	NOUN
cord-002994-1zjrunzc	206	3	were	be	AUX
cord-002994-1zjrunzc	206	4	constructed	construct	VERB
cord-002994-1zjrunzc	206	5	using	use	VERB
cord-002994-1zjrunzc	206	6	1000	1000	NUM
cord-002994-1zjrunzc	206	7	bootstrap	bootstrap	NOUN
cord-002994-1zjrunzc	206	8	replications	replication	NOUN
cord-002994-1zjrunzc	206	9	and	and	CCONJ
cord-002994-1zjrunzc	206	10	midpoint	midpoint	NOUN
cord-002994-1zjrunzc	206	11	rooted	root	VERB
cord-002994-1zjrunzc	206	12	for	for	ADP
cord-002994-1zjrunzc	206	13	clarity	clarity	NOUN
cord-002994-1zjrunzc	206	14	only	only	ADV
cord-002994-1zjrunzc	206	15	(	(	PUNCT
cord-002994-1zjrunzc	206	16	figure	figure	NOUN
cord-002994-1zjrunzc	206	17	7	7	NUM
cord-002994-1zjrunzc	206	18	)	)	PUNCT
cord-002994-1zjrunzc	206	19	.	.	PUNCT
cord-002994-1zjrunzc	207	1	this	this	DET
cord-002994-1zjrunzc	207	2	recombination	recombination	NOUN
cord-002994-1zjrunzc	207	3	event	event	NOUN
cord-002994-1zjrunzc	207	4	led	lead	VERB
cord-002994-1zjrunzc	207	5	to	to	ADP
cord-002994-1zjrunzc	207	6	a	a	DET
cord-002994-1zjrunzc	207	7	mismatch	mismatch	NOUN
cord-002994-1zjrunzc	207	8	between	between	ADP
cord-002994-1zjrunzc	207	9	nj	nj	PROPN
cord-002994-1zjrunzc	207	10	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	207	11	trees	tree	NOUN
cord-002994-1zjrunzc	207	12	constructed	construct	VERB
cord-002994-1zjrunzc	207	13	using	use	VERB
cord-002994-1zjrunzc	207	14	comparison	comparison	NOUN
cord-002994-1zjrunzc	207	15	of	of	ADP
cord-002994-1zjrunzc	207	16	nucleotides	nucleotide	NOUN
cord-002994-1zjrunzc	207	17	sequences	sequence	NOUN
cord-002994-1zjrunzc	207	18	of	of	ADP
cord-002994-1zjrunzc	207	19	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	207	20	(	(	PUNCT
cord-002994-1zjrunzc	207	21	positions	position	NOUN
cord-002994-1zjrunzc	207	22	2202	2202	NUM
cord-002994-1zjrunzc	207	23	-	-	SYM
cord-002994-1zjrunzc	207	24	4908	4908	NUM
cord-002994-1zjrunzc	207	25	)	)	PUNCT
cord-002994-1zjrunzc	207	26	and	and	CCONJ
cord-002994-1zjrunzc	207	27	non	non	ADJ
cord-002994-1zjrunzc	207	28	-	-	ADJ
cord-002994-1zjrunzc	207	29	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	207	30	genomic	genomic	ADJ
cord-002994-1zjrunzc	207	31	regions	region	NOUN
cord-002994-1zjrunzc	207	32	(	(	PUNCT
cord-002994-1zjrunzc	207	33	positions	position	NOUN
cord-002994-1zjrunzc	207	34	1	1	NUM
cord-002994-1zjrunzc	207	35	-	-	SYM
cord-002994-1zjrunzc	207	36	2201	2201	NUM
cord-002994-1zjrunzc	207	37	and	and	CCONJ
cord-002994-1zjrunzc	207	38	4909	4909	NUM
cord-002994-1zjrunzc	207	39	-	-	SYM
cord-002994-1zjrunzc	207	40	10,281	10,281	NUM
cord-002994-1zjrunzc	207	41	)	)	PUNCT
cord-002994-1zjrunzc	207	42	.	.	PUNCT
cord-002994-1zjrunzc	208	1	the	the	DET
cord-002994-1zjrunzc	208	2	tree	tree	NOUN
cord-002994-1zjrunzc	208	3	is	be	AUX
cord-002994-1zjrunzc	208	4	midpoint	midpoint	NOUN
cord-002994-1zjrunzc	208	5	-	-	PUNCT
cord-002994-1zjrunzc	208	6	rooted	root	VERB
cord-002994-1zjrunzc	208	7	,	,	PUNCT
cord-002994-1zjrunzc	208	8	nodes	node	NOUN
cord-002994-1zjrunzc	208	9	are	be	AUX
cord-002994-1zjrunzc	208	10	labeled	label	VERB
cord-002994-1zjrunzc	208	11	with	with	ADP
cord-002994-1zjrunzc	208	12	local	local	ADJ
cord-002994-1zjrunzc	208	13	support	support	NOUN
cord-002994-1zjrunzc	208	14	values	value	NOUN
cord-002994-1zjrunzc	208	15	computed	compute	VERB
cord-002994-1zjrunzc	208	16	using	use	VERB
cord-002994-1zjrunzc	208	17	the	the	DET
cord-002994-1zjrunzc	208	18	shimodaira	shimodaira	PROPN
cord-002994-1zjrunzc	208	19	-	-	PUNCT
cord-002994-1zjrunzc	208	20	hasegawa	hasegawa	PROPN
cord-002994-1zjrunzc	208	21	(	(	PUNCT
cord-002994-1zjrunzc	208	22	sh	sh	PROPN
cord-002994-1zjrunzc	208	23	)	)	PUNCT
cord-002994-1zjrunzc	208	24	test	test	NOUN
cord-002994-1zjrunzc	208	25	for	for	ADP
cord-002994-1zjrunzc	208	26	5000	5000	NUM
cord-002994-1zjrunzc	208	27	bootstrap	bootstrap	NOUN
cord-002994-1zjrunzc	208	28	replications	replication	NOUN
cord-002994-1zjrunzc	208	29	,	,	PUNCT
cord-002994-1zjrunzc	208	30	species	species	NOUN
cord-002994-1zjrunzc	208	31	names	name	NOUN
cord-002994-1zjrunzc	208	32	are	be	AUX
cord-002994-1zjrunzc	208	33	color	color	NOUN
cord-002994-1zjrunzc	208	34	-	-	PUNCT
cord-002994-1zjrunzc	208	35	coded	code	VERB
cord-002994-1zjrunzc	208	36	as	as	SCONJ
cord-002994-1zjrunzc	208	37	follows	follow	VERB
cord-002994-1zjrunzc	208	38	:	:	PUNCT
cord-002994-1zjrunzc	208	39	new	new	ADJ
cord-002994-1zjrunzc	208	40	characterized	characterized	ADJ
cord-002994-1zjrunzc	208	41	bagv	bagv	PROPN
cord-002994-1zjrunzc	208	42	isolatesdark	isolatesdark	PROPN
cord-002994-1zjrunzc	208	43	blue	blue	PROPN
cord-002994-1zjrunzc	208	44	with	with	ADP
cord-002994-1zjrunzc	208	45	dots	dot	NOUN
cord-002994-1zjrunzc	208	46	;	;	PUNCT
cord-002994-1zjrunzc	208	47	previous	previous	ADJ
cord-002994-1zjrunzc	208	48	sequences	sequence	NOUN
cord-002994-1zjrunzc	208	49	of	of	ADP
cord-002994-1zjrunzc	208	50	bagv	bagv	NOUN
cord-002994-1zjrunzc	208	51	-	-	PUNCT
cord-002994-1zjrunzc	208	52	dark	dark	PROPN
cord-002994-1zjrunzc	208	53	blue	blue	PROPN
cord-002994-1zjrunzc	208	54	;	;	PUNCT
cord-002994-1zjrunzc	208	55	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	208	56	-	-	PUNCT
cord-002994-1zjrunzc	208	57	borne	bear	VERB
cord-002994-1zjrunzc	208	58	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	208	59	(	(	PUNCT
cord-002994-1zjrunzc	208	60	mbfvs)-green	mbfvs)-green	PROPN
cord-002994-1zjrunzc	208	61	;	;	PUNCT
cord-002994-1zjrunzc	208	62	dual	dual	ADJ
cord-002994-1zjrunzc	208	63	-	-	PUNCT
cord-002994-1zjrunzc	208	64	host	host	NOUN
cord-002994-1zjrunzc	208	65	affiliated	affiliate	VERB
cord-002994-1zjrunzc	208	66	isfs	isfs	PROPN
cord-002994-1zjrunzc	208	67	(	(	PUNCT
cord-002994-1zjrunzc	208	68	disfs)-red	disfs)-red	PROPN
cord-002994-1zjrunzc	208	69	;	;	PUNCT
cord-002994-1zjrunzc	208	70	no	no	DET
cord-002994-1zjrunzc	208	71	known	known	ADJ
cord-002994-1zjrunzc	208	72	vector	vector	NOUN
cord-002994-1zjrunzc	208	73	(	(	PUNCT
cord-002994-1zjrunzc	208	74	nkv	nkv	ADJ
cord-002994-1zjrunzc	208	75	)	)	PUNCT
cord-002994-1zjrunzc	208	76	flavivirusesyellow	flavivirusesyellow	ADJ
cord-002994-1zjrunzc	208	77	;	;	PUNCT
cord-002994-1zjrunzc	208	78	tick	tick	NOUN
cord-002994-1zjrunzc	208	79	-	-	PUNCT
cord-002994-1zjrunzc	208	80	born	bear	VERB
cord-002994-1zjrunzc	208	81	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	208	82	(	(	PUNCT
cord-002994-1zjrunzc	208	83	tbfvs)-light	tbfvs)-light	NOUN
cord-002994-1zjrunzc	208	84	blue	blue	ADJ
cord-002994-1zjrunzc	208	85	;	;	PUNCT
cord-002994-1zjrunzc	208	86	classical	classical	ADJ
cord-002994-1zjrunzc	208	87	isfs	isfs	PROPN
cord-002994-1zjrunzc	208	88	(	(	PUNCT
cord-002994-1zjrunzc	208	89	cisfs)-orange	cisfs)-orange	PROPN
cord-002994-1zjrunzc	208	90	.	.	PUNCT
cord-002994-1zjrunzc	209	1	given	give	VERB
cord-002994-1zjrunzc	209	2	the	the	DET
cord-002994-1zjrunzc	209	3	major	major	ADJ
cord-002994-1zjrunzc	209	4	implications	implication	NOUN
cord-002994-1zjrunzc	209	5	of	of	ADP
cord-002994-1zjrunzc	209	6	recombination	recombination	NOUN
cord-002994-1zjrunzc	209	7	events	event	NOUN
cord-002994-1zjrunzc	209	8	for	for	ADP
cord-002994-1zjrunzc	209	9	evolution	evolution	NOUN
cord-002994-1zjrunzc	209	10	,	,	PUNCT
cord-002994-1zjrunzc	209	11	pathogenicity	pathogenicity	NOUN
cord-002994-1zjrunzc	209	12	,	,	PUNCT
cord-002994-1zjrunzc	209	13	or	or	CCONJ
cord-002994-1zjrunzc	209	14	diagnosis	diagnosis	NOUN
cord-002994-1zjrunzc	209	15	of	of	ADP
cord-002994-1zjrunzc	209	16	non	non	ADJ
cord-002994-1zjrunzc	209	17	-	-	ADJ
cord-002994-1zjrunzc	209	18	segmented	segmented	ADJ
cord-002994-1zjrunzc	209	19	positive	positive	ADJ
cord-002994-1zjrunzc	209	20	rna	rna	PROPN
cord-002994-1zjrunzc	209	21	viruses	virus	NOUN
cord-002994-1zjrunzc	209	22	like	like	ADP
cord-002994-1zjrunzc	209	23	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	209	24	[	[	PUNCT
cord-002994-1zjrunzc	209	25	44	44	NUM
cord-002994-1zjrunzc	209	26	]	]	PUNCT
cord-002994-1zjrunzc	209	27	,	,	PUNCT
cord-002994-1zjrunzc	209	28	it	it	PRON
cord-002994-1zjrunzc	209	29	is	be	AUX
cord-002994-1zjrunzc	209	30	clearly	clearly	ADV
cord-002994-1zjrunzc	209	31	important	important	ADJ
cord-002994-1zjrunzc	209	32	to	to	PART
cord-002994-1zjrunzc	209	33	determine	determine	VERB
cord-002994-1zjrunzc	209	34	their	their	PRON
cord-002994-1zjrunzc	209	35	occurrence	occurrence	NOUN
cord-002994-1zjrunzc	209	36	in	in	ADP
cord-002994-1zjrunzc	209	37	the	the	DET
cord-002994-1zjrunzc	209	38	bagv	bagv	PROPN
cord-002994-1zjrunzc	209	39	genome	genome	PROPN
cord-002994-1zjrunzc	209	40	.	.	PUNCT
cord-002994-1zjrunzc	210	1	the	the	DET
cord-002994-1zjrunzc	210	2	rdp4beta	rdp4beta	PROPN
cord-002994-1zjrunzc	210	3	4.8	4.8	NUM
cord-002994-1zjrunzc	210	4	program	program	NOUN
cord-002994-1zjrunzc	210	5	used	use	VERB
cord-002994-1zjrunzc	210	6	for	for	ADP
cord-002994-1zjrunzc	210	7	assessment	assessment	NOUN
cord-002994-1zjrunzc	210	8	of	of	ADP
cord-002994-1zjrunzc	210	9	recombination	recombination	NOUN
cord-002994-1zjrunzc	210	10	events	event	NOUN
cord-002994-1zjrunzc	210	11	on	on	ADP
cord-002994-1zjrunzc	210	12	complete	complete	ADJ
cord-002994-1zjrunzc	210	13	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	210	14	sequences	sequence	NOUN
cord-002994-1zjrunzc	210	15	[	[	X
cord-002994-1zjrunzc	210	16	27	27	NUM
cord-002994-1zjrunzc	210	17	]	]	PUNCT
cord-002994-1zjrunzc	210	18	revealed	reveal	VERB
cord-002994-1zjrunzc	210	19	evidence	evidence	NOUN
cord-002994-1zjrunzc	210	20	of	of	ADP
cord-002994-1zjrunzc	210	21	only	only	ADV
cord-002994-1zjrunzc	210	22	one	one	NUM
cord-002994-1zjrunzc	210	23	highly	highly	ADV
cord-002994-1zjrunzc	210	24	credible	credible	ADJ
cord-002994-1zjrunzc	210	25	recombination	recombination	NOUN
cord-002994-1zjrunzc	210	26	event	event	NOUN
cord-002994-1zjrunzc	210	27	from	from	ADP
cord-002994-1zjrunzc	210	28	the	the	DET
cord-002994-1zjrunzc	210	29	e	e	NOUN
cord-002994-1zjrunzc	210	30	protein	protein	NOUN
cord-002994-1zjrunzc	210	31	to	to	ADP
cord-002994-1zjrunzc	210	32	ns2b	ns2b	PROPN
cord-002994-1zjrunzc	210	33	,	,	PUNCT
cord-002994-1zjrunzc	210	34	with	with	ADP
cord-002994-1zjrunzc	210	35	estimated	estimate	VERB
cord-002994-1zjrunzc	210	36	breakpoints	breakpoint	NOUN
cord-002994-1zjrunzc	210	37	at	at	ADP
cord-002994-1zjrunzc	210	38	positions	position	NOUN
cord-002994-1zjrunzc	210	39	2202	2202	NUM
cord-002994-1zjrunzc	210	40	and	and	CCONJ
cord-002994-1zjrunzc	210	41	4908	4908	NUM
cord-002994-1zjrunzc	210	42	of	of	ADP
cord-002994-1zjrunzc	210	43	bagv	bagv	PROPN
cord-002994-1zjrunzc	210	44	genome	genome	PROPN
cord-002994-1zjrunzc	210	45	.	.	PUNCT
cord-002994-1zjrunzc	211	1	this	this	DET
cord-002994-1zjrunzc	211	2	recombination	recombination	NOUN
cord-002994-1zjrunzc	211	3	event	event	NOUN
cord-002994-1zjrunzc	211	4	involved	involve	VERB
cord-002994-1zjrunzc	211	5	the	the	DET
cord-002994-1zjrunzc	211	6	isolate	isolate	NOUN
cord-002994-1zjrunzc	211	7	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	211	8	-	-	PUNCT
cord-002994-1zjrunzc	211	9	bango_sen_1989	bango_sen_1989	NOUN
cord-002994-1zjrunzc	211	10	originating	originate	VERB
cord-002994-1zjrunzc	211	11	from	from	ADP
cord-002994-1zjrunzc	211	12	saint	saint	PROPN
cord-002994-1zjrunzc	211	13	-	-	PUNCT
cord-002994-1zjrunzc	211	14	louis	louis	NOUN
cord-002994-1zjrunzc	211	15	,	,	PUNCT
cord-002994-1zjrunzc	211	16	in	in	ADP
cord-002994-1zjrunzc	211	17	the	the	DET
cord-002994-1zjrunzc	211	18	north	north	NOUN
cord-002994-1zjrunzc	211	19	of	of	ADP
cord-002994-1zjrunzc	211	20	senegal	senegal	PROPN
cord-002994-1zjrunzc	211	21	(	(	PUNCT
cord-002994-1zjrunzc	211	22	figure	figure	NOUN
cord-002994-1zjrunzc	211	23	6	6	NUM
cord-002994-1zjrunzc	211	24	)	)	PUNCT
cord-002994-1zjrunzc	211	25	.	.	PUNCT
cord-002994-1zjrunzc	212	1	considering	consider	VERB
cord-002994-1zjrunzc	212	2	the	the	DET
cord-002994-1zjrunzc	212	3	isolates	isolate	NOUN
cord-002994-1zjrunzc	212	4	ard260266_barkedji_sen_2014	ard260266_barkedji_sen_2014	NOUN
cord-002994-1zjrunzc	212	5	and	and	CCONJ
cord-002994-1zjrunzc	212	6	ard171075_barkedji_sen_2004	ard171075_barkedji_sen_2004	NOUN
cord-002994-1zjrunzc	212	7	as	as	ADP
cord-002994-1zjrunzc	212	8	respective	respective	ADJ
cord-002994-1zjrunzc	212	9	minor	minor	ADJ
cord-002994-1zjrunzc	212	10	and	and	CCONJ
cord-002994-1zjrunzc	212	11	major	major	ADJ
cord-002994-1zjrunzc	212	12	parents	parent	NOUN
cord-002994-1zjrunzc	212	13	of	of	ADP
cord-002994-1zjrunzc	212	14	the	the	DET
cord-002994-1zjrunzc	212	15	isolate	isolate	NOUN
cord-002994-1zjrunzc	212	16	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	212	17	-	-	PUNCT
cord-002994-1zjrunzc	212	18	bango_sen_1989	bango_sen_1989	NOUN
cord-002994-1zjrunzc	212	19	(	(	PUNCT
cord-002994-1zjrunzc	212	20	similarity	similarity	NOUN
cord-002994-1zjrunzc	212	21	of	of	ADP
cord-002994-1zjrunzc	212	22	98.8	98.8	NUM
cord-002994-1zjrunzc	212	23	%	%	NOUN
cord-002994-1zjrunzc	212	24	and	and	CCONJ
cord-002994-1zjrunzc	212	25	97	97	NUM
cord-002994-1zjrunzc	212	26	%	%	NOUN
cord-002994-1zjrunzc	212	27	,	,	PUNCT
cord-002994-1zjrunzc	212	28	respectively	respectively	ADV
cord-002994-1zjrunzc	212	29	)	)	PUNCT
cord-002994-1zjrunzc	212	30	,	,	PUNCT
cord-002994-1zjrunzc	212	31	this	this	DET
cord-002994-1zjrunzc	212	32	recombination	recombination	NOUN
cord-002994-1zjrunzc	212	33	event	event	NOUN
cord-002994-1zjrunzc	212	34	was	be	AUX
cord-002994-1zjrunzc	212	35	found	find	VERB
cord-002994-1zjrunzc	212	36	by	by	ADP
cord-002994-1zjrunzc	212	37	rdp	rdp	PROPN
cord-002994-1zjrunzc	212	38	,	,	PUNCT
cord-002994-1zjrunzc	212	39	geneconv	geneconv	PROPN
cord-002994-1zjrunzc	212	40	,	,	PUNCT
cord-002994-1zjrunzc	212	41	bootscan	bootscan	PROPN
cord-002994-1zjrunzc	212	42	,	,	PUNCT
cord-002994-1zjrunzc	212	43	maxchi	maxchi	PROPN
cord-002994-1zjrunzc	212	44	,	,	PUNCT
cord-002994-1zjrunzc	212	45	chimaera	chimaera	PROPN
cord-002994-1zjrunzc	212	46	,	,	PUNCT
cord-002994-1zjrunzc	212	47	sisscan	sisscan	ADJ
cord-002994-1zjrunzc	212	48	and	and	CCONJ
cord-002994-1zjrunzc	212	49	3seq	3seq	NUM
cord-002994-1zjrunzc	212	50	methods	method	NOUN
cord-002994-1zjrunzc	212	51	and	and	CCONJ
cord-002994-1zjrunzc	212	52	supported	support	VERB
cord-002994-1zjrunzc	212	53	by	by	ADP
cord-002994-1zjrunzc	212	54	significant	significant	ADJ
cord-002994-1zjrunzc	212	55	p	p	NOUN
cord-002994-1zjrunzc	212	56	-	-	NOUN
cord-002994-1zjrunzc	212	57	values	value	NOUN
cord-002994-1zjrunzc	212	58	of	of	ADP
cord-002994-1zjrunzc	212	59	3.09	3.09	NUM
cord-002994-1zjrunzc	212	60	×	×	NOUN
cord-002994-1zjrunzc	212	61	10	10	NUM
cord-002994-1zjrunzc	212	62	-16	-16	NUM
cord-002994-1zjrunzc	212	63	,	,	PUNCT
cord-002994-1zjrunzc	212	64	9.23	9.23	NUM
cord-002994-1zjrunzc	212	65	×	×	NOUN
cord-002994-1zjrunzc	212	66	10	10	NUM
cord-002994-1zjrunzc	212	67	−12	−12	NOUN
cord-002994-1zjrunzc	212	68	,	,	PUNCT
cord-002994-1zjrunzc	212	69	7.36	7.36	NUM
cord-002994-1zjrunzc	212	70	×	×	NOUN
cord-002994-1zjrunzc	212	71	10	10	NUM
cord-002994-1zjrunzc	212	72	−13	−13	PROPN
cord-002994-1zjrunzc	212	73	,	,	PUNCT
cord-002994-1zjrunzc	212	74	8.45	8.45	NUM
cord-002994-1zjrunzc	212	75	×	×	NOUN
cord-002994-1zjrunzc	212	76	10	10	NUM
cord-002994-1zjrunzc	212	77	−7	−7	NOUN
cord-002994-1zjrunzc	212	78	,	,	PUNCT
cord-002994-1zjrunzc	212	79	1.59	1.59	NUM
cord-002994-1zjrunzc	212	80	×	×	NOUN
cord-002994-1zjrunzc	212	81	10	10	NUM
cord-002994-1zjrunzc	212	82	−7	−7	NOUN
cord-002994-1zjrunzc	212	83	,	,	PUNCT
cord-002994-1zjrunzc	212	84	3.60	3.60	NUM
cord-002994-1zjrunzc	212	85	×	×	NOUN
cord-002994-1zjrunzc	212	86	10	10	NUM
cord-002994-1zjrunzc	212	87	−8	−8	NOUN
cord-002994-1zjrunzc	212	88	and	and	CCONJ
cord-002994-1zjrunzc	212	89	1.17	1.17	NUM
cord-002994-1zjrunzc	212	90	×	×	NOUN
cord-002994-1zjrunzc	212	91	10	10	NUM
cord-002994-1zjrunzc	212	92	−12	−12	PROPN
cord-002994-1zjrunzc	212	93	,	,	PUNCT
cord-002994-1zjrunzc	212	94	respectively	respectively	ADV
cord-002994-1zjrunzc	212	95	.	.	PUNCT
cord-002994-1zjrunzc	213	1	the	the	DET
cord-002994-1zjrunzc	213	2	bootscan	bootscan	PROPN
cord-002994-1zjrunzc	213	3	and	and	CCONJ
cord-002994-1zjrunzc	213	4	gard	gard	NOUN
cord-002994-1zjrunzc	213	5	analyzes	analyzes	AUX
cord-002994-1zjrunzc	213	6	identified	identify	VERB
cord-002994-1zjrunzc	213	7	one	one	NUM
cord-002994-1zjrunzc	213	8	significant	significant	ADJ
cord-002994-1zjrunzc	213	9	recombination	recombination	NOUN
cord-002994-1zjrunzc	213	10	breakpoint	breakpoint	NOUN
cord-002994-1zjrunzc	213	11	at	at	ADP
cord-002994-1zjrunzc	213	12	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	213	13	position	position	NOUN
cord-002994-1zjrunzc	213	14	2201	2201	NUM
cord-002994-1zjrunzc	213	15	corresponding	correspond	VERB
cord-002994-1zjrunzc	213	16	to	to	ADP
cord-002994-1zjrunzc	213	17	the	the	DET
cord-002994-1zjrunzc	213	18	e	e	PROPN
cord-002994-1zjrunzc	213	19	protein	protein	NOUN
cord-002994-1zjrunzc	213	20	,	,	PUNCT
cord-002994-1zjrunzc	213	21	supported	support	VERB
cord-002994-1zjrunzc	213	22	by	by	ADP
cord-002994-1zjrunzc	213	23	a	a	DET
cord-002994-1zjrunzc	213	24	lhs	lhs	PROPN
cord-002994-1zjrunzc	213	25	p	p	PROPN
cord-002994-1zjrunzc	213	26	-	-	PUNCT
cord-002994-1zjrunzc	213	27	value	value	NOUN
cord-002994-1zjrunzc	213	28	of	of	ADP
cord-002994-1zjrunzc	213	29	0.024	0.024	NUM
cord-002994-1zjrunzc	213	30	and	and	CCONJ
cord-002994-1zjrunzc	213	31	a	a	DET
cord-002994-1zjrunzc	213	32	rhs	rhs	NOUN
cord-002994-1zjrunzc	213	33	p	p	NOUN
cord-002994-1zjrunzc	213	34	-	-	NOUN
cord-002994-1zjrunzc	213	35	value	value	NOUN
cord-002994-1zjrunzc	213	36	of	of	ADP
cord-002994-1zjrunzc	213	37	0.001	0.001	NUM
cord-002994-1zjrunzc	213	38	.	.	PUNCT
cord-002994-1zjrunzc	214	1	this	this	DET
cord-002994-1zjrunzc	214	2	breakpoint	breakpoint	NOUN
cord-002994-1zjrunzc	214	3	divides	divide	VERB
cord-002994-1zjrunzc	214	4	the	the	DET
cord-002994-1zjrunzc	214	5	bagv	bagv	NOUN
cord-002994-1zjrunzc	214	6	genome	genome	NOUN
cord-002994-1zjrunzc	214	7	into	into	ADP
cord-002994-1zjrunzc	214	8	two	two	NUM
cord-002994-1zjrunzc	214	9	regions	region	NOUN
cord-002994-1zjrunzc	214	10	:	:	PUNCT
cord-002994-1zjrunzc	214	11	one	one	NUM
cord-002994-1zjrunzc	214	12	that	that	PRON
cord-002994-1zjrunzc	214	13	encodes	encode	VERB
cord-002994-1zjrunzc	214	14	the	the	DET
cord-002994-1zjrunzc	214	15	structural	structural	ADJ
cord-002994-1zjrunzc	214	16	proteins	protein	NOUN
cord-002994-1zjrunzc	214	17	and	and	CCONJ
cord-002994-1zjrunzc	214	18	another	another	PRON
cord-002994-1zjrunzc	214	19	that	that	PRON
cord-002994-1zjrunzc	214	20	encodes	encode	VERB
cord-002994-1zjrunzc	214	21	the	the	DET
cord-002994-1zjrunzc	214	22	non	non	ADJ
cord-002994-1zjrunzc	214	23	-	-	ADJ
cord-002994-1zjrunzc	214	24	structural	structural	ADJ
cord-002994-1zjrunzc	214	25	proteins	protein	NOUN
cord-002994-1zjrunzc	214	26	.	.	PUNCT
cord-002994-1zjrunzc	215	1	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	215	2	trees	tree	NOUN
cord-002994-1zjrunzc	215	3	were	be	AUX
cord-002994-1zjrunzc	215	4	constructed	construct	VERB
cord-002994-1zjrunzc	215	5	using	use	VERB
cord-002994-1zjrunzc	215	6	1000	1000	NUM
cord-002994-1zjrunzc	215	7	bootstrap	bootstrap	NOUN
cord-002994-1zjrunzc	215	8	replications	replication	NOUN
cord-002994-1zjrunzc	215	9	and	and	CCONJ
cord-002994-1zjrunzc	215	10	midpoint	midpoint	NOUN
cord-002994-1zjrunzc	215	11	rooted	root	VERB
cord-002994-1zjrunzc	215	12	for	for	ADP
cord-002994-1zjrunzc	215	13	clarity	clarity	NOUN
cord-002994-1zjrunzc	215	14	only	only	ADV
cord-002994-1zjrunzc	215	15	(	(	PUNCT
cord-002994-1zjrunzc	215	16	figure	figure	NOUN
cord-002994-1zjrunzc	215	17	7	7	NUM
cord-002994-1zjrunzc	215	18	)	)	PUNCT
cord-002994-1zjrunzc	215	19	.	.	PUNCT
cord-002994-1zjrunzc	216	1	this	this	DET
cord-002994-1zjrunzc	216	2	recombination	recombination	NOUN
cord-002994-1zjrunzc	216	3	event	event	NOUN
cord-002994-1zjrunzc	216	4	led	lead	VERB
cord-002994-1zjrunzc	216	5	to	to	ADP
cord-002994-1zjrunzc	216	6	a	a	DET
cord-002994-1zjrunzc	216	7	mismatch	mismatch	NOUN
cord-002994-1zjrunzc	216	8	between	between	ADP
cord-002994-1zjrunzc	216	9	nj	nj	PROPN
cord-002994-1zjrunzc	216	10	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	216	11	trees	tree	NOUN
cord-002994-1zjrunzc	216	12	constructed	construct	VERB
cord-002994-1zjrunzc	216	13	using	use	VERB
cord-002994-1zjrunzc	216	14	comparison	comparison	NOUN
cord-002994-1zjrunzc	216	15	of	of	ADP
cord-002994-1zjrunzc	216	16	nucleotides	nucleotide	NOUN
cord-002994-1zjrunzc	216	17	sequences	sequence	NOUN
cord-002994-1zjrunzc	216	18	of	of	ADP
cord-002994-1zjrunzc	216	19	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	216	20	(	(	PUNCT
cord-002994-1zjrunzc	216	21	positions	position	NOUN
cord-002994-1zjrunzc	216	22	2202	2202	NUM
cord-002994-1zjrunzc	216	23	-	-	SYM
cord-002994-1zjrunzc	216	24	4908	4908	NUM
cord-002994-1zjrunzc	216	25	)	)	PUNCT
cord-002994-1zjrunzc	216	26	and	and	CCONJ
cord-002994-1zjrunzc	216	27	non	non	ADJ
cord-002994-1zjrunzc	216	28	-	-	ADJ
cord-002994-1zjrunzc	216	29	recombinant	recombinant	ADJ
cord-002994-1zjrunzc	216	30	genomic	genomic	ADJ
cord-002994-1zjrunzc	216	31	regions	region	NOUN
cord-002994-1zjrunzc	216	32	(	(	PUNCT
cord-002994-1zjrunzc	216	33	positions	position	NOUN
cord-002994-1zjrunzc	216	34	1	1	NUM
cord-002994-1zjrunzc	216	35	-	-	SYM
cord-002994-1zjrunzc	216	36	2201	2201	NUM
cord-002994-1zjrunzc	216	37	and	and	CCONJ
cord-002994-1zjrunzc	216	38	4909	4909	NUM
cord-002994-1zjrunzc	216	39	-	-	SYM
cord-002994-1zjrunzc	216	40	10,281	10,281	NUM
cord-002994-1zjrunzc	216	41	)	)	PUNCT
cord-002994-1zjrunzc	216	42	.	.	PUNCT
cord-002994-1zjrunzc	217	1	the	the	DET
cord-002994-1zjrunzc	217	2	structural	structural	ADJ
cord-002994-1zjrunzc	217	3	and	and	CCONJ
cord-002994-1zjrunzc	217	4	non	non	ADJ
cord-002994-1zjrunzc	217	5	-	-	ADJ
cord-002994-1zjrunzc	217	6	structural	structural	ADJ
cord-002994-1zjrunzc	217	7	coding	code	VERB
cord-002994-1zjrunzc	217	8	regions	region	NOUN
cord-002994-1zjrunzc	217	9	were	be	AUX
cord-002994-1zjrunzc	217	10	analyzed	analyze	VERB
cord-002994-1zjrunzc	217	11	separately	separately	ADV
cord-002994-1zjrunzc	217	12	for	for	ADP
cord-002994-1zjrunzc	217	13	estimation	estimation	NOUN
cord-002994-1zjrunzc	217	14	of	of	ADP
cord-002994-1zjrunzc	217	15	sites	site	NOUN
cord-002994-1zjrunzc	217	16	and	and	CCONJ
cord-002994-1zjrunzc	217	17	branches	branch	NOUN
cord-002994-1zjrunzc	217	18	under	under	ADP
cord-002994-1zjrunzc	217	19	positive	positive	ADJ
cord-002994-1zjrunzc	217	20	diversifying	diversifying	NOUN
cord-002994-1zjrunzc	217	21	selection	selection	NOUN
cord-002994-1zjrunzc	217	22	,	,	PUNCT
cord-002994-1zjrunzc	217	23	applying	apply	VERB
cord-002994-1zjrunzc	217	24	four	four	NUM
cord-002994-1zjrunzc	217	25	different	different	ADJ
cord-002994-1zjrunzc	217	26	methods	method	NOUN
cord-002994-1zjrunzc	217	27	to	to	PART
cord-002994-1zjrunzc	217	28	ensure	ensure	VERB
cord-002994-1zjrunzc	217	29	consistency	consistency	NOUN
cord-002994-1zjrunzc	217	30	of	of	ADP
cord-002994-1zjrunzc	217	31	these	these	DET
cord-002994-1zjrunzc	217	32	events	event	NOUN
cord-002994-1zjrunzc	217	33	along	along	ADP
cord-002994-1zjrunzc	217	34	of	of	ADP
cord-002994-1zjrunzc	217	35	bagv	bagv	PROPN
cord-002994-1zjrunzc	217	36	sequences	sequence	NOUN
cord-002994-1zjrunzc	217	37	.	.	PUNCT
cord-002994-1zjrunzc	218	1	using	use	VERB
cord-002994-1zjrunzc	218	2	this	this	DET
cord-002994-1zjrunzc	218	3	approach	approach	NOUN
cord-002994-1zjrunzc	218	4	,	,	PUNCT
cord-002994-1zjrunzc	218	5	we	we	PRON
cord-002994-1zjrunzc	218	6	found	find	VERB
cord-002994-1zjrunzc	218	7	several	several	ADJ
cord-002994-1zjrunzc	218	8	sites	site	NOUN
cord-002994-1zjrunzc	218	9	under	under	ADP
cord-002994-1zjrunzc	218	10	strong	strong	ADJ
cord-002994-1zjrunzc	218	11	negative	negative	ADJ
cord-002994-1zjrunzc	218	12	selection	selection	NOUN
cord-002994-1zjrunzc	218	13	and	and	CCONJ
cord-002994-1zjrunzc	218	14	most	most	ADJ
cord-002994-1zjrunzc	218	15	of	of	ADP
cord-002994-1zjrunzc	218	16	them	they	PRON
cord-002994-1zjrunzc	218	17	were	be	AUX
cord-002994-1zjrunzc	218	18	in	in	ADP
cord-002994-1zjrunzc	218	19	the	the	DET
cord-002994-1zjrunzc	218	20	e	e	NOUN
cord-002994-1zjrunzc	218	21	,	,	PUNCT
cord-002994-1zjrunzc	218	22	ns3	ns3	ADJ
cord-002994-1zjrunzc	218	23	and	and	CCONJ
cord-002994-1zjrunzc	218	24	ns5	ns5	ADJ
cord-002994-1zjrunzc	218	25	proteins	protein	NOUN
cord-002994-1zjrunzc	218	26	(	(	PUNCT
cord-002994-1zjrunzc	218	27	table	table	NOUN
cord-002994-1zjrunzc	218	28	5	5	NUM
cord-002994-1zjrunzc	218	29	)	)	PUNCT
cord-002994-1zjrunzc	218	30	.	.	PUNCT
cord-002994-1zjrunzc	219	1	however	however	ADV
cord-002994-1zjrunzc	219	2	,	,	PUNCT
cord-002994-1zjrunzc	219	3	the	the	DET
cord-002994-1zjrunzc	219	4	significant	significant	ADJ
cord-002994-1zjrunzc	219	5	evidence	evidence	NOUN
cord-002994-1zjrunzc	219	6	(	(	PUNCT
cord-002994-1zjrunzc	219	7	p	p	X
cord-002994-1zjrunzc	219	8	<	<	X
cord-002994-1zjrunzc	219	9	0.1	0.1	NUM
cord-002994-1zjrunzc	219	10	)	)	PUNCT
cord-002994-1zjrunzc	219	11	of	of	ADP
cord-002994-1zjrunzc	219	12	episodic	episodic	ADJ
cord-002994-1zjrunzc	219	13	positive	positive	ADJ
cord-002994-1zjrunzc	219	14	selection	selection	NOUN
cord-002994-1zjrunzc	219	15	was	be	AUX
cord-002994-1zjrunzc	219	16	obtained	obtain	VERB
cord-002994-1zjrunzc	219	17	for	for	ADP
cord-002994-1zjrunzc	219	18	all	all	DET
cord-002994-1zjrunzc	219	19	the	the	DET
cord-002994-1zjrunzc	219	20	coding	code	VERB
cord-002994-1zjrunzc	219	21	genes	gene	NOUN
cord-002994-1zjrunzc	219	22	,	,	PUNCT
cord-002994-1zjrunzc	219	23	except	except	SCONJ
cord-002994-1zjrunzc	219	24	for	for	ADP
cord-002994-1zjrunzc	219	25	the	the	DET
cord-002994-1zjrunzc	219	26	prm	prm	PROPN
cord-002994-1zjrunzc	219	27	,	,	PUNCT
cord-002994-1zjrunzc	219	28	ns2b	ns2b	PROPN
cord-002994-1zjrunzc	219	29	and	and	CCONJ
cord-002994-1zjrunzc	219	30	ns4a	ns4a	NOUN
cord-002994-1zjrunzc	219	31	regions	region	NOUN
cord-002994-1zjrunzc	219	32	.	.	PUNCT
cord-002994-1zjrunzc	220	1	all	all	DET
cord-002994-1zjrunzc	220	2	positively	positively	ADV
cord-002994-1zjrunzc	220	3	selected	select	VERB
cord-002994-1zjrunzc	220	4	sites	site	NOUN
cord-002994-1zjrunzc	220	5	estimated	estimate	VERB
cord-002994-1zjrunzc	220	6	by	by	ADP
cord-002994-1zjrunzc	220	7	the	the	DET
cord-002994-1zjrunzc	220	8	fubar	fubar	NOUN
cord-002994-1zjrunzc	220	9	model	model	NOUN
cord-002994-1zjrunzc	220	10	(	(	PUNCT
cord-002994-1zjrunzc	220	11	posterior	posterior	ADJ
cord-002994-1zjrunzc	220	12	probability	probability	NOUN
cord-002994-1zjrunzc	220	13	≥	≥	X
cord-002994-1zjrunzc	220	14	0.9	0.9	NUM
cord-002994-1zjrunzc	220	15	)	)	PUNCT
cord-002994-1zjrunzc	220	16	were	be	AUX
cord-002994-1zjrunzc	220	17	also	also	ADV
cord-002994-1zjrunzc	220	18	identified	identify	VERB
cord-002994-1zjrunzc	220	19	by	by	ADP
cord-002994-1zjrunzc	220	20	the	the	DET
cord-002994-1zjrunzc	220	21	meme	meme	NOUN
cord-002994-1zjrunzc	220	22	method	method	NOUN
cord-002994-1zjrunzc	220	23	(	(	PUNCT
cord-002994-1zjrunzc	220	24	p	p	X
cord-002994-1zjrunzc	220	25	<	<	X
cord-002994-1zjrunzc	220	26	0.1	0.1	NUM
cord-002994-1zjrunzc	220	27	)	)	PUNCT
cord-002994-1zjrunzc	220	28	.	.	PUNCT
cord-002994-1zjrunzc	221	1	thus	thus	ADV
cord-002994-1zjrunzc	221	2	,	,	PUNCT
cord-002994-1zjrunzc	221	3	an	an	DET
cord-002994-1zjrunzc	221	4	important	important	ADJ
cord-002994-1zjrunzc	221	5	number	number	NOUN
cord-002994-1zjrunzc	221	6	of	of	ADP
cord-002994-1zjrunzc	221	7	positively	positively	ADV
cord-002994-1zjrunzc	221	8	selected	select	VERB
cord-002994-1zjrunzc	221	9	sites	site	NOUN
cord-002994-1zjrunzc	221	10	were	be	AUX
cord-002994-1zjrunzc	221	11	detected	detect	VERB
cord-002994-1zjrunzc	221	12	;	;	PUNCT
cord-002994-1zjrunzc	221	13	interestingly	interestingly	ADV
cord-002994-1zjrunzc	221	14	,	,	PUNCT
cord-002994-1zjrunzc	221	15	the	the	DET
cord-002994-1zjrunzc	221	16	majority	majority	NOUN
cord-002994-1zjrunzc	221	17	of	of	ADP
cord-002994-1zjrunzc	221	18	such	such	ADJ
cord-002994-1zjrunzc	221	19	sites	site	NOUN
cord-002994-1zjrunzc	221	20	were	be	AUX
cord-002994-1zjrunzc	221	21	in	in	ADP
cord-002994-1zjrunzc	221	22	the	the	DET
cord-002994-1zjrunzc	221	23	e	e	PROPN
cord-002994-1zjrunzc	221	24	,	,	PUNCT
cord-002994-1zjrunzc	221	25	ns1	ns1	PROPN
cord-002994-1zjrunzc	221	26	and	and	CCONJ
cord-002994-1zjrunzc	221	27	ns5	ns5	PROPN
cord-002994-1zjrunzc	221	28	proteins	protein	NOUN
cord-002994-1zjrunzc	221	29	.	.	PUNCT
cord-002994-1zjrunzc	222	1	branch	branch	NOUN
cord-002994-1zjrunzc	222	2	-	-	PUNCT
cord-002994-1zjrunzc	222	3	site	site	NOUN
cord-002994-1zjrunzc	222	4	analysis	analysis	NOUN
cord-002994-1zjrunzc	222	5	showed	show	VERB
cord-002994-1zjrunzc	222	6	also	also	ADV
cord-002994-1zjrunzc	222	7	a	a	DET
cord-002994-1zjrunzc	222	8	total	total	NOUN
cord-002994-1zjrunzc	222	9	of	of	ADP
cord-002994-1zjrunzc	222	10	11	11	NUM
cord-002994-1zjrunzc	222	11	branches	branch	NOUN
cord-002994-1zjrunzc	222	12	evaluating	evaluate	VERB
cord-002994-1zjrunzc	222	13	under	under	ADP
cord-002994-1zjrunzc	222	14	positive	positive	ADJ
cord-002994-1zjrunzc	222	15	selection	selection	NOUN
cord-002994-1zjrunzc	222	16	(	(	PUNCT
cord-002994-1zjrunzc	222	17	p	p	X
cord-002994-1zjrunzc	222	18	<	<	X
cord-002994-1zjrunzc	222	19	0.05	0.05	NUM
cord-002994-1zjrunzc	222	20	)	)	PUNCT
cord-002994-1zjrunzc	222	21	and	and	CCONJ
cord-002994-1zjrunzc	222	22	the	the	DET
cord-002994-1zjrunzc	222	23	highest	high	ADJ
cord-002994-1zjrunzc	222	24	proportion	proportion	NOUN
cord-002994-1zjrunzc	222	25	was	be	AUX
cord-002994-1zjrunzc	222	26	in	in	ADP
cord-002994-1zjrunzc	222	27	the	the	DET
cord-002994-1zjrunzc	222	28	e	e	NOUN
cord-002994-1zjrunzc	222	29	and	and	CCONJ
cord-002994-1zjrunzc	222	30	ns1	ns1	NOUN
cord-002994-1zjrunzc	222	31	proteins	protein	NOUN
cord-002994-1zjrunzc	222	32	.	.	PUNCT
cord-002994-1zjrunzc	223	1	the	the	DET
cord-002994-1zjrunzc	223	2	structural	structural	ADJ
cord-002994-1zjrunzc	223	3	and	and	CCONJ
cord-002994-1zjrunzc	223	4	non	non	ADJ
cord-002994-1zjrunzc	223	5	-	-	ADJ
cord-002994-1zjrunzc	223	6	structural	structural	ADJ
cord-002994-1zjrunzc	223	7	coding	code	VERB
cord-002994-1zjrunzc	223	8	regions	region	NOUN
cord-002994-1zjrunzc	223	9	were	be	AUX
cord-002994-1zjrunzc	223	10	analyzed	analyze	VERB
cord-002994-1zjrunzc	223	11	separately	separately	ADV
cord-002994-1zjrunzc	223	12	for	for	ADP
cord-002994-1zjrunzc	223	13	estimation	estimation	NOUN
cord-002994-1zjrunzc	223	14	of	of	ADP
cord-002994-1zjrunzc	223	15	sites	site	NOUN
cord-002994-1zjrunzc	223	16	and	and	CCONJ
cord-002994-1zjrunzc	223	17	branches	branch	NOUN
cord-002994-1zjrunzc	223	18	under	under	ADP
cord-002994-1zjrunzc	223	19	positive	positive	ADJ
cord-002994-1zjrunzc	223	20	diversifying	diversifying	NOUN
cord-002994-1zjrunzc	223	21	selection	selection	NOUN
cord-002994-1zjrunzc	223	22	,	,	PUNCT
cord-002994-1zjrunzc	223	23	applying	apply	VERB
cord-002994-1zjrunzc	223	24	four	four	NUM
cord-002994-1zjrunzc	223	25	different	different	ADJ
cord-002994-1zjrunzc	223	26	methods	method	NOUN
cord-002994-1zjrunzc	223	27	to	to	PART
cord-002994-1zjrunzc	223	28	ensure	ensure	VERB
cord-002994-1zjrunzc	223	29	consistency	consistency	NOUN
cord-002994-1zjrunzc	223	30	of	of	ADP
cord-002994-1zjrunzc	223	31	these	these	DET
cord-002994-1zjrunzc	223	32	events	event	NOUN
cord-002994-1zjrunzc	223	33	along	along	ADP
cord-002994-1zjrunzc	223	34	of	of	ADP
cord-002994-1zjrunzc	223	35	bagv	bagv	PROPN
cord-002994-1zjrunzc	223	36	sequences	sequence	NOUN
cord-002994-1zjrunzc	223	37	.	.	PUNCT
cord-002994-1zjrunzc	224	1	using	use	VERB
cord-002994-1zjrunzc	224	2	this	this	DET
cord-002994-1zjrunzc	224	3	approach	approach	NOUN
cord-002994-1zjrunzc	224	4	,	,	PUNCT
cord-002994-1zjrunzc	224	5	we	we	PRON
cord-002994-1zjrunzc	224	6	found	find	VERB
cord-002994-1zjrunzc	224	7	several	several	ADJ
cord-002994-1zjrunzc	224	8	sites	site	NOUN
cord-002994-1zjrunzc	224	9	under	under	ADP
cord-002994-1zjrunzc	224	10	strong	strong	ADJ
cord-002994-1zjrunzc	224	11	negative	negative	ADJ
cord-002994-1zjrunzc	224	12	selection	selection	NOUN
cord-002994-1zjrunzc	224	13	and	and	CCONJ
cord-002994-1zjrunzc	224	14	most	most	ADJ
cord-002994-1zjrunzc	224	15	of	of	ADP
cord-002994-1zjrunzc	224	16	them	they	PRON
cord-002994-1zjrunzc	224	17	were	be	AUX
cord-002994-1zjrunzc	224	18	in	in	ADP
cord-002994-1zjrunzc	224	19	the	the	DET
cord-002994-1zjrunzc	224	20	e	e	NOUN
cord-002994-1zjrunzc	224	21	,	,	PUNCT
cord-002994-1zjrunzc	224	22	ns3	ns3	ADJ
cord-002994-1zjrunzc	224	23	and	and	CCONJ
cord-002994-1zjrunzc	224	24	ns5	ns5	ADJ
cord-002994-1zjrunzc	224	25	proteins	protein	NOUN
cord-002994-1zjrunzc	224	26	(	(	PUNCT
cord-002994-1zjrunzc	224	27	table	table	NOUN
cord-002994-1zjrunzc	224	28	5	5	NUM
cord-002994-1zjrunzc	224	29	)	)	PUNCT
cord-002994-1zjrunzc	224	30	.	.	PUNCT
cord-002994-1zjrunzc	225	1	however	however	ADV
cord-002994-1zjrunzc	225	2	,	,	PUNCT
cord-002994-1zjrunzc	225	3	the	the	DET
cord-002994-1zjrunzc	225	4	significant	significant	ADJ
cord-002994-1zjrunzc	225	5	evidence	evidence	NOUN
cord-002994-1zjrunzc	225	6	(	(	PUNCT
cord-002994-1zjrunzc	225	7	p	p	X
cord-002994-1zjrunzc	225	8	<	<	X
cord-002994-1zjrunzc	225	9	0.1	0.1	NUM
cord-002994-1zjrunzc	225	10	)	)	PUNCT
cord-002994-1zjrunzc	225	11	of	of	ADP
cord-002994-1zjrunzc	225	12	episodic	episodic	ADJ
cord-002994-1zjrunzc	225	13	positive	positive	ADJ
cord-002994-1zjrunzc	225	14	selection	selection	NOUN
cord-002994-1zjrunzc	225	15	was	be	AUX
cord-002994-1zjrunzc	225	16	obtained	obtain	VERB
cord-002994-1zjrunzc	225	17	for	for	ADP
cord-002994-1zjrunzc	225	18	all	all	DET
cord-002994-1zjrunzc	225	19	the	the	DET
cord-002994-1zjrunzc	225	20	coding	code	VERB
cord-002994-1zjrunzc	225	21	genes	gene	NOUN
cord-002994-1zjrunzc	225	22	,	,	PUNCT
cord-002994-1zjrunzc	225	23	except	except	SCONJ
cord-002994-1zjrunzc	225	24	for	for	ADP
cord-002994-1zjrunzc	225	25	the	the	DET
cord-002994-1zjrunzc	225	26	prm	prm	PROPN
cord-002994-1zjrunzc	225	27	,	,	PUNCT
cord-002994-1zjrunzc	225	28	ns2b	ns2b	PROPN
cord-002994-1zjrunzc	225	29	and	and	CCONJ
cord-002994-1zjrunzc	225	30	ns4a	ns4a	NOUN
cord-002994-1zjrunzc	225	31	regions	region	NOUN
cord-002994-1zjrunzc	225	32	.	.	PUNCT
cord-002994-1zjrunzc	226	1	all	all	DET
cord-002994-1zjrunzc	226	2	positively	positively	ADV
cord-002994-1zjrunzc	226	3	selected	select	VERB
cord-002994-1zjrunzc	226	4	sites	site	NOUN
cord-002994-1zjrunzc	226	5	estimated	estimate	VERB
cord-002994-1zjrunzc	226	6	by	by	ADP
cord-002994-1zjrunzc	226	7	the	the	DET
cord-002994-1zjrunzc	226	8	fubar	fubar	NOUN
cord-002994-1zjrunzc	226	9	model	model	NOUN
cord-002994-1zjrunzc	226	10	(	(	PUNCT
cord-002994-1zjrunzc	226	11	posterior	posterior	ADJ
cord-002994-1zjrunzc	226	12	probability	probability	NOUN
cord-002994-1zjrunzc	226	13	≥	≥	X
cord-002994-1zjrunzc	226	14	0.9	0.9	NUM
cord-002994-1zjrunzc	226	15	)	)	PUNCT
cord-002994-1zjrunzc	226	16	were	be	AUX
cord-002994-1zjrunzc	226	17	also	also	ADV
cord-002994-1zjrunzc	226	18	identified	identify	VERB
cord-002994-1zjrunzc	226	19	by	by	ADP
cord-002994-1zjrunzc	226	20	the	the	DET
cord-002994-1zjrunzc	226	21	meme	meme	NOUN
cord-002994-1zjrunzc	226	22	method	method	NOUN
cord-002994-1zjrunzc	226	23	(	(	PUNCT
cord-002994-1zjrunzc	226	24	p	p	X
cord-002994-1zjrunzc	226	25	<	<	X
cord-002994-1zjrunzc	226	26	0.1	0.1	NUM
cord-002994-1zjrunzc	226	27	)	)	PUNCT
cord-002994-1zjrunzc	226	28	.	.	PUNCT
cord-002994-1zjrunzc	227	1	thus	thus	ADV
cord-002994-1zjrunzc	227	2	,	,	PUNCT
cord-002994-1zjrunzc	227	3	an	an	DET
cord-002994-1zjrunzc	227	4	important	important	ADJ
cord-002994-1zjrunzc	227	5	number	number	NOUN
cord-002994-1zjrunzc	227	6	of	of	ADP
cord-002994-1zjrunzc	227	7	positively	positively	ADV
cord-002994-1zjrunzc	227	8	selected	select	VERB
cord-002994-1zjrunzc	227	9	sites	site	NOUN
cord-002994-1zjrunzc	227	10	were	be	AUX
cord-002994-1zjrunzc	227	11	detected	detect	VERB
cord-002994-1zjrunzc	227	12	;	;	PUNCT
cord-002994-1zjrunzc	227	13	interestingly	interestingly	ADV
cord-002994-1zjrunzc	227	14	,	,	PUNCT
cord-002994-1zjrunzc	227	15	the	the	DET
cord-002994-1zjrunzc	227	16	majority	majority	NOUN
cord-002994-1zjrunzc	227	17	of	of	ADP
cord-002994-1zjrunzc	227	18	such	such	ADJ
cord-002994-1zjrunzc	227	19	sites	site	NOUN
cord-002994-1zjrunzc	227	20	were	be	AUX
cord-002994-1zjrunzc	227	21	in	in	ADP
cord-002994-1zjrunzc	227	22	the	the	DET
cord-002994-1zjrunzc	227	23	e	e	PROPN
cord-002994-1zjrunzc	227	24	,	,	PUNCT
cord-002994-1zjrunzc	227	25	ns1	ns1	PROPN
cord-002994-1zjrunzc	227	26	and	and	CCONJ
cord-002994-1zjrunzc	227	27	ns5	ns5	PROPN
cord-002994-1zjrunzc	227	28	proteins	protein	NOUN
cord-002994-1zjrunzc	227	29	.	.	PUNCT
cord-002994-1zjrunzc	228	1	branch	branch	NOUN
cord-002994-1zjrunzc	228	2	-	-	PUNCT
cord-002994-1zjrunzc	228	3	site	site	NOUN
cord-002994-1zjrunzc	228	4	analysis	analysis	NOUN
cord-002994-1zjrunzc	228	5	showed	show	VERB
cord-002994-1zjrunzc	228	6	also	also	ADV
cord-002994-1zjrunzc	228	7	a	a	DET
cord-002994-1zjrunzc	228	8	total	total	NOUN
cord-002994-1zjrunzc	228	9	of	of	ADP
cord-002994-1zjrunzc	228	10	11	11	NUM
cord-002994-1zjrunzc	228	11	branches	branch	NOUN
cord-002994-1zjrunzc	228	12	evaluating	evaluate	VERB
cord-002994-1zjrunzc	228	13	under	under	ADP
cord-002994-1zjrunzc	228	14	positive	positive	ADJ
cord-002994-1zjrunzc	228	15	selection	selection	NOUN
cord-002994-1zjrunzc	228	16	(	(	PUNCT
cord-002994-1zjrunzc	228	17	p	p	X
cord-002994-1zjrunzc	228	18	<	<	X
cord-002994-1zjrunzc	228	19	0.05	0.05	NUM
cord-002994-1zjrunzc	228	20	)	)	PUNCT
cord-002994-1zjrunzc	228	21	and	and	CCONJ
cord-002994-1zjrunzc	228	22	the	the	DET
cord-002994-1zjrunzc	228	23	highest	high	ADJ
cord-002994-1zjrunzc	228	24	proportion	proportion	NOUN
cord-002994-1zjrunzc	228	25	was	be	AUX
cord-002994-1zjrunzc	228	26	in	in	ADP
cord-002994-1zjrunzc	228	27	the	the	DET
cord-002994-1zjrunzc	228	28	e	e	NOUN
cord-002994-1zjrunzc	228	29	and	and	CCONJ
cord-002994-1zjrunzc	228	30	ns1	ns1	NOUN
cord-002994-1zjrunzc	228	31	proteins	protein	NOUN
cord-002994-1zjrunzc	228	32	.	.	PUNCT
cord-002994-1zjrunzc	229	1	pervasive	pervasive	ADJ
cord-002994-1zjrunzc	229	2	diversifying	diversify	VERB
cord-002994-1zjrunzc	229	3	selection	selection	NOUN
cord-002994-1zjrunzc	229	4	at	at	ADP
cord-002994-1zjrunzc	229	5	posterior	posterior	ADJ
cord-002994-1zjrunzc	229	6	probability	probability	NOUN
cord-002994-1zjrunzc	229	7	≥	≥	NOUN
cord-002994-1zjrunzc	229	8	0.9	0.9	NUM
cord-002994-1zjrunzc	229	9	with	with	ADP
cord-002994-1zjrunzc	229	10	fubar	fubar	NOUN
cord-002994-1zjrunzc	229	11	model	model	NOUN
cord-002994-1zjrunzc	229	12	;	;	PUNCT
cord-002994-1zjrunzc	229	13	episodic	episodic	ADJ
cord-002994-1zjrunzc	229	14	diversifying	diversify	VERB
cord-002994-1zjrunzc	229	15	selection	selection	NOUN
cord-002994-1zjrunzc	229	16	at	at	ADP
cord-002994-1zjrunzc	229	17	0.1	0.1	NUM
cord-002994-1zjrunzc	229	18	significance	significance	NOUN
cord-002994-1zjrunzc	229	19	level	level	NOUN
cord-002994-1zjrunzc	229	20	with	with	ADP
cord-002994-1zjrunzc	229	21	slac	slac	PROPN
cord-002994-1zjrunzc	229	22	and	and	CCONJ
cord-002994-1zjrunzc	229	23	meme	meme	NOUN
cord-002994-1zjrunzc	229	24	models	model	NOUN
cord-002994-1zjrunzc	229	25	;	;	PUNCT
cord-002994-1zjrunzc	229	26	episodic	episodic	ADJ
cord-002994-1zjrunzc	229	27	diversifying	diversify	VERB
cord-002994-1zjrunzc	229	28	selection	selection	NOUN
cord-002994-1zjrunzc	229	29	at	at	ADP
cord-002994-1zjrunzc	229	30	p	p	NOUN
cord-002994-1zjrunzc	229	31	-	-	PUNCT
cord-002994-1zjrunzc	229	32	value	value	NOUN
cord-002994-1zjrunzc	229	33	p	p	NOUN
cord-002994-1zjrunzc	229	34	≤	≤	PROPN
cord-002994-1zjrunzc	229	35	0.05	0.05	NUM
cord-002994-1zjrunzc	229	36	with	with	ADP
cord-002994-1zjrunzc	229	37	branch	branch	NOUN
cord-002994-1zjrunzc	229	38	-	-	PUNCT
cord-002994-1zjrunzc	229	39	sites	site	NOUN
cord-002994-1zjrunzc	229	40	rel	rel	NOUN
cord-002994-1zjrunzc	229	41	model	model	NOUN
cord-002994-1zjrunzc	229	42	.	.	PUNCT
cord-002994-1zjrunzc	230	1	mcmc	mcmc	NOUN
cord-002994-1zjrunzc	230	2	convergence	convergence	NOUN
cord-002994-1zjrunzc	230	3	was	be	AUX
cord-002994-1zjrunzc	230	4	obtained	obtain	VERB
cord-002994-1zjrunzc	230	5	for	for	ADP
cord-002994-1zjrunzc	230	6	three	three	NUM
cord-002994-1zjrunzc	230	7	independent	independent	ADJ
cord-002994-1zjrunzc	230	8	runs	run	NOUN
cord-002994-1zjrunzc	230	9	with	with	ADP
cord-002994-1zjrunzc	230	10	100	100	NUM
cord-002994-1zjrunzc	230	11	million	million	NUM
cord-002994-1zjrunzc	230	12	generations	generation	NOUN
cord-002994-1zjrunzc	230	13	,	,	PUNCT
cord-002994-1zjrunzc	230	14	which	which	PRON
cord-002994-1zjrunzc	230	15	were	be	AUX
cord-002994-1zjrunzc	230	16	sufficient	sufficient	ADJ
cord-002994-1zjrunzc	230	17	to	to	PART
cord-002994-1zjrunzc	230	18	obtain	obtain	VERB
cord-002994-1zjrunzc	230	19	a	a	DET
cord-002994-1zjrunzc	230	20	proper	proper	ADJ
cord-002994-1zjrunzc	230	21	sample	sample	NOUN
cord-002994-1zjrunzc	230	22	for	for	ADP
cord-002994-1zjrunzc	230	23	the	the	DET
cord-002994-1zjrunzc	230	24	posterior	posterior	NOUN
cord-002994-1zjrunzc	230	25	at	at	ADP
cord-002994-1zjrunzc	230	26	mcmc	mcmc	NOUN
cord-002994-1zjrunzc	230	27	stationarity	stationarity	NOUN
cord-002994-1zjrunzc	230	28	assessed	assess	VERB
cord-002994-1zjrunzc	230	29	by	by	ADP
cord-002994-1zjrunzc	230	30	effective	effective	ADJ
cord-002994-1zjrunzc	230	31	sample	sample	NOUN
cord-002994-1zjrunzc	230	32	sizes	size	NOUN
cord-002994-1zjrunzc	230	33	(	(	PUNCT
cord-002994-1zjrunzc	230	34	ess	ess	PROPN
cord-002994-1zjrunzc	230	35	)	)	PUNCT
cord-002994-1zjrunzc	230	36	above	above	ADP
cord-002994-1zjrunzc	230	37	200	200	NUM
cord-002994-1zjrunzc	230	38	for	for	ADP
cord-002994-1zjrunzc	230	39	each	each	DET
cord-002994-1zjrunzc	230	40	gene	gene	NOUN
cord-002994-1zjrunzc	230	41	.	.	PUNCT
cord-002994-1zjrunzc	231	1	furthermore	furthermore	ADV
cord-002994-1zjrunzc	231	2	,	,	PUNCT
cord-002994-1zjrunzc	231	3	the	the	DET
cord-002994-1zjrunzc	231	4	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	231	5	rates	rate	NOUN
cord-002994-1zjrunzc	231	6	(	(	PUNCT
cord-002994-1zjrunzc	231	7	µ	µ	NOUN
cord-002994-1zjrunzc	231	8	)	)	PUNCT
cord-002994-1zjrunzc	231	9	and	and	CCONJ
cord-002994-1zjrunzc	231	10	the	the	DET
cord-002994-1zjrunzc	231	11	highest	high	ADJ
cord-002994-1zjrunzc	231	12	posterior	posterior	ADJ
cord-002994-1zjrunzc	231	13	densities	density	NOUN
cord-002994-1zjrunzc	231	14	(	(	PUNCT
cord-002994-1zjrunzc	231	15	hpd	hpd	NOUN
cord-002994-1zjrunzc	231	16	with	with	ADP
cord-002994-1zjrunzc	231	17	95	95	NUM
cord-002994-1zjrunzc	231	18	%	%	NOUN
cord-002994-1zjrunzc	231	19	of	of	ADP
cord-002994-1zjrunzc	231	20	confidence	confidence	NOUN
cord-002994-1zjrunzc	231	21	interval	interval	NOUN
cord-002994-1zjrunzc	231	22	)	)	PUNCT
cord-002994-1zjrunzc	231	23	were	be	AUX
cord-002994-1zjrunzc	231	24	1.226	1.226	NUM
cord-002994-1zjrunzc	231	25	×	×	NOUN
cord-002994-1zjrunzc	231	26	10	10	NUM
cord-002994-1zjrunzc	231	27	evidence	evidence	NOUN
cord-002994-1zjrunzc	231	28	of	of	ADP
cord-002994-1zjrunzc	231	29	bagv	bagv	PROPN
cord-002994-1zjrunzc	231	30	adaptation	adaptation	PROPN
cord-002994-1zjrunzc	231	31	to	to	ADP
cord-002994-1zjrunzc	231	32	human	human	PROPN
cord-002994-1zjrunzc	231	33	house	house	NOUN
cord-002994-1zjrunzc	231	34	-	-	PUNCT
cord-002994-1zjrunzc	231	35	keeping	keep	VERB
cord-002994-1zjrunzc	231	36	genes	gene	NOUN
cord-002994-1zjrunzc	231	37	was	be	AUX
cord-002994-1zjrunzc	231	38	analyzed	analyze	VERB
cord-002994-1zjrunzc	231	39	by	by	ADP
cord-002994-1zjrunzc	231	40	calculating	calculate	VERB
cord-002994-1zjrunzc	231	41	cai	cai	NOUN
cord-002994-1zjrunzc	231	42	indices	index	NOUN
cord-002994-1zjrunzc	231	43	using	use	VERB
cord-002994-1zjrunzc	231	44	complete	complete	ADJ
cord-002994-1zjrunzc	231	45	coding	code	VERB
cord-002994-1zjrunzc	231	46	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	231	47	sequences	sequence	NOUN
cord-002994-1zjrunzc	231	48	of	of	ADP
cord-002994-1zjrunzc	231	49	west	west	PROPN
cord-002994-1zjrunzc	231	50	african	african	ADJ
cord-002994-1zjrunzc	231	51	bagv	bagv	PROPN
cord-002994-1zjrunzc	231	52	isolates	isolates	PROPN
cord-002994-1zjrunzc	231	53	and	and	CCONJ
cord-002994-1zjrunzc	231	54	bagv	bagv	NOUN
cord-002994-1zjrunzc	231	55	sequences	sequence	NOUN
cord-002994-1zjrunzc	231	56	available	available	ADJ
cord-002994-1zjrunzc	231	57	from	from	ADP
cord-002994-1zjrunzc	231	58	spain	spain	PROPN
cord-002994-1zjrunzc	231	59	,	,	PUNCT
cord-002994-1zjrunzc	231	60	in	in	ADP
cord-002994-1zjrunzc	231	61	comparison	comparison	NOUN
cord-002994-1zjrunzc	231	62	to	to	ADP
cord-002994-1zjrunzc	231	63	other	other	ADJ
cord-002994-1zjrunzc	231	64	mbfvs	mbfvs	ADJ
cord-002994-1zjrunzc	231	65	such	such	ADJ
cord-002994-1zjrunzc	231	66	as	as	ADP
cord-002994-1zjrunzc	231	67	denv	denv	ADJ
cord-002994-1zjrunzc	231	68	,	,	PUNCT
cord-002994-1zjrunzc	231	69	usuv	usuv	ADJ
cord-002994-1zjrunzc	231	70	,	,	PUNCT
cord-002994-1zjrunzc	231	71	wnv	wnv	NOUN
cord-002994-1zjrunzc	231	72	,	,	PUNCT
cord-002994-1zjrunzc	231	73	zikv	zikv	PROPN
cord-002994-1zjrunzc	231	74	and	and	CCONJ
cord-002994-1zjrunzc	231	75	yfv	yfv	PROPN
cord-002994-1zjrunzc	231	76	,	,	PUNCT
cord-002994-1zjrunzc	231	77	nkv	nkv	ADJ
cord-002994-1zjrunzc	231	78	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	231	79	(	(	PUNCT
cord-002994-1zjrunzc	231	80	modv	modv	NOUN
cord-002994-1zjrunzc	231	81	and	and	CCONJ
cord-002994-1zjrunzc	231	82	rbv	rbv	PROPN
cord-002994-1zjrunzc	231	83	)	)	PUNCT
cord-002994-1zjrunzc	231	84	and	and	CCONJ
cord-002994-1zjrunzc	231	85	isfs	isfs	PROPN
cord-002994-1zjrunzc	231	86	(	(	PUNCT
cord-002994-1zjrunzc	231	87	cxfv	cxfv	PROPN
cord-002994-1zjrunzc	231	88	and	and	CCONJ
cord-002994-1zjrunzc	231	89	aefv	aefv	PROPN
cord-002994-1zjrunzc	231	90	)	)	PUNCT
cord-002994-1zjrunzc	231	91	.	.	PUNCT
cord-002994-1zjrunzc	232	1	cai	cai	NOUN
cord-002994-1zjrunzc	232	2	values	value	NOUN
cord-002994-1zjrunzc	232	3	>	>	SYM
cord-002994-1zjrunzc	232	4	1	1	NUM
cord-002994-1zjrunzc	232	5	were	be	AUX
cord-002994-1zjrunzc	232	6	obtained	obtain	VERB
cord-002994-1zjrunzc	232	7	for	for	ADP
cord-002994-1zjrunzc	232	8	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	232	9	sequences	sequence	NOUN
cord-002994-1zjrunzc	232	10	of	of	ADP
cord-002994-1zjrunzc	232	11	all	all	DET
cord-002994-1zjrunzc	232	12	bagv	bagv	NOUN
cord-002994-1zjrunzc	232	13	isolates	isolate	VERB
cord-002994-1zjrunzc	232	14	.	.	PUNCT
cord-002994-1zjrunzc	233	1	thus	thus	ADV
cord-002994-1zjrunzc	233	2	,	,	PUNCT
cord-002994-1zjrunzc	233	3	there	there	PRON
cord-002994-1zjrunzc	233	4	is	be	VERB
cord-002994-1zjrunzc	233	5	evidence	evidence	NOUN
cord-002994-1zjrunzc	233	6	that	that	SCONJ
cord-002994-1zjrunzc	233	7	bagv	bagv	NOUN
cord-002994-1zjrunzc	233	8	could	could	AUX
cord-002994-1zjrunzc	233	9	have	have	AUX
cord-002994-1zjrunzc	233	10	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	233	11	to	to	ADP
cord-002994-1zjrunzc	233	12	the	the	DET
cord-002994-1zjrunzc	233	13	human	human	ADJ
cord-002994-1zjrunzc	233	14	genes	gene	NOUN
cord-002994-1zjrunzc	233	15	(	(	PUNCT
cord-002994-1zjrunzc	233	16	figure	figure	NOUN
cord-002994-1zjrunzc	233	17	9	9	NUM
cord-002994-1zjrunzc	233	18	)	)	PUNCT
cord-002994-1zjrunzc	233	19	.	.	PUNCT
cord-002994-1zjrunzc	234	1	modv(mean	modv(mean	PROPN
cord-002994-1zjrunzc	234	2	cai	cai	PROPN
cord-002994-1zjrunzc	234	3	:	:	PUNCT
cord-002994-1zjrunzc	234	4	1.072	1.072	NUM
cord-002994-1zjrunzc	234	5	and	and	CCONJ
cord-002994-1zjrunzc	234	6	median	median	ADJ
cord-002994-1zjrunzc	234	7	cai	cai	PROPN
cord-002994-1zjrunzc	234	8	:	:	PUNCT
cord-002994-1zjrunzc	234	9	1.072	1.072	NUM
cord-002994-1zjrunzc	234	10	)	)	PUNCT
cord-002994-1zjrunzc	234	11	,	,	PUNCT
cord-002994-1zjrunzc	234	12	rbv	rbv	PROPN
cord-002994-1zjrunzc	234	13	(	(	PUNCT
cord-002994-1zjrunzc	234	14	mean	mean	PROPN
cord-002994-1zjrunzc	234	15	cai	cai	PROPN
cord-002994-1zjrunzc	234	16	:	:	PUNCT
cord-002994-1zjrunzc	234	17	1.059	1.059	NUM
cord-002994-1zjrunzc	234	18	and	and	CCONJ
cord-002994-1zjrunzc	234	19	median	median	ADJ
cord-002994-1zjrunzc	234	20	cai	cai	PROPN
cord-002994-1zjrunzc	234	21	:	:	PUNCT
cord-002994-1zjrunzc	234	22	1.059	1.059	NUM
cord-002994-1zjrunzc	234	23	)	)	PUNCT
cord-002994-1zjrunzc	234	24	and	and	CCONJ
cord-002994-1zjrunzc	234	25	yfv	yfv	PROPN
cord-002994-1zjrunzc	234	26	(	(	PUNCT
cord-002994-1zjrunzc	234	27	mean	mean	PROPN
cord-002994-1zjrunzc	234	28	cai	cai	NOUN
cord-002994-1zjrunzc	234	29	:	:	PUNCT
cord-002994-1zjrunzc	234	30	1.075	1.075	NUM
cord-002994-1zjrunzc	234	31	and	and	CCONJ
cord-002994-1zjrunzc	234	32	median	median	ADJ
cord-002994-1zjrunzc	234	33	cai	cai	NOUN
cord-002994-1zjrunzc	234	34	:	:	PUNCT
cord-002994-1zjrunzc	234	35	1.072	1.072	NUM
cord-002994-1zjrunzc	234	36	)	)	PUNCT
cord-002994-1zjrunzc	234	37	showed	show	VERB
cord-002994-1zjrunzc	234	38	the	the	DET
cord-002994-1zjrunzc	234	39	highest	high	ADJ
cord-002994-1zjrunzc	234	40	cai	cai	NOUN
cord-002994-1zjrunzc	234	41	values	value	NOUN
cord-002994-1zjrunzc	234	42	for	for	ADP
cord-002994-1zjrunzc	234	43	human	human	ADJ
cord-002994-1zjrunzc	234	44	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	234	45	genes	gene	NOUN
cord-002994-1zjrunzc	234	46	and	and	CCONJ
cord-002994-1zjrunzc	234	47	were	be	AUX
cord-002994-1zjrunzc	234	48	significantly	significantly	ADV
cord-002994-1zjrunzc	234	49	different	different	ADJ
cord-002994-1zjrunzc	234	50	to	to	ADP
cord-002994-1zjrunzc	234	51	spanish	spanish	ADJ
cord-002994-1zjrunzc	234	52	and	and	CCONJ
cord-002994-1zjrunzc	234	53	west	west	PROPN
cord-002994-1zjrunzc	234	54	african	african	ADJ
cord-002994-1zjrunzc	234	55	bagv	bagv	PROPN
cord-002994-1zjrunzc	234	56	isolates	isolate	VERB
cord-002994-1zjrunzc	234	57	(	(	PUNCT
cord-002994-1zjrunzc	234	58	wilcoxon	wilcoxon	ADJ
cord-002994-1zjrunzc	234	59	rank	rank	NOUN
cord-002994-1zjrunzc	234	60	sum	sum	NOUN
cord-002994-1zjrunzc	234	61	test	test	NOUN
cord-002994-1zjrunzc	234	62	,	,	PUNCT
cord-002994-1zjrunzc	234	63	p	p	NOUN
cord-002994-1zjrunzc	234	64	-	-	PUNCT
cord-002994-1zjrunzc	234	65	values	value	NOUN
cord-002994-1zjrunzc	234	66	ranging	range	VERB
cord-002994-1zjrunzc	234	67	from	from	ADP
cord-002994-1zjrunzc	234	68	0.0001	0.0001	NUM
cord-002994-1zjrunzc	234	69	to	to	ADP
cord-002994-1zjrunzc	234	70	1.028	1.028	NUM
cord-002994-1zjrunzc	234	71	×	×	NOUN
cord-002994-1zjrunzc	234	72	10	10	NUM
cord-002994-1zjrunzc	234	73	−7	−7	NUM
cord-002994-1zjrunzc	234	74	)	)	PUNCT
cord-002994-1zjrunzc	234	75	.	.	PUNCT
cord-002994-1zjrunzc	235	1	compared	compare	VERB
cord-002994-1zjrunzc	235	2	to	to	ADP
cord-002994-1zjrunzc	235	3	those	those	PRON
cord-002994-1zjrunzc	235	4	of	of	ADP
cord-002994-1zjrunzc	235	5	spanish	spanish	ADJ
cord-002994-1zjrunzc	235	6	isolates	isolate	NOUN
cord-002994-1zjrunzc	235	7	,	,	PUNCT
cord-002994-1zjrunzc	235	8	sequences	sequence	NOUN
cord-002994-1zjrunzc	235	9	of	of	ADP
cord-002994-1zjrunzc	235	10	west	west	PROPN
cord-002994-1zjrunzc	235	11	african	african	PROPN
cord-002994-1zjrunzc	235	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	235	13	isolates	isolate	VERB
cord-002994-1zjrunzc	235	14	presented	present	VERB
cord-002994-1zjrunzc	235	15	significantly	significantly	ADV
cord-002994-1zjrunzc	235	16	higher	high	ADJ
cord-002994-1zjrunzc	235	17	cai	cai	NOUN
cord-002994-1zjrunzc	235	18	values	value	NOUN
cord-002994-1zjrunzc	235	19	(	(	PUNCT
cord-002994-1zjrunzc	235	20	mean	mean	ADJ
cord-002994-1zjrunzc	235	21	cai	cai	NOUN
cord-002994-1zjrunzc	235	22	:	:	PUNCT
cord-002994-1zjrunzc	235	23	1.044	1.044	NUM
cord-002994-1zjrunzc	235	24	and	and	CCONJ
cord-002994-1zjrunzc	235	25	median	median	ADJ
cord-002994-1zjrunzc	235	26	cai	cai	NOUN
cord-002994-1zjrunzc	235	27	:	:	PUNCT
cord-002994-1zjrunzc	235	28	1.044	1.044	NUM
cord-002994-1zjrunzc	235	29	,	,	PUNCT
cord-002994-1zjrunzc	235	30	wilcoxon	wilcoxon	ADJ
cord-002994-1zjrunzc	235	31	rank	rank	NOUN
cord-002994-1zjrunzc	235	32	sum	sum	NOUN
cord-002994-1zjrunzc	235	33	test	test	NOUN
cord-002994-1zjrunzc	235	34	,	,	PUNCT
cord-002994-1zjrunzc	235	35	p	p	NOUN
cord-002994-1zjrunzc	235	36	-	-	PUNCT
cord-002994-1zjrunzc	235	37	value	value	NOUN
cord-002994-1zjrunzc	235	38	<	<	X
cord-002994-1zjrunzc	235	39	0.002	0.002	NUM
cord-002994-1zjrunzc	235	40	)	)	PUNCT
cord-002994-1zjrunzc	235	41	.	.	PUNCT
cord-002994-1zjrunzc	236	1	in	in	ADP
cord-002994-1zjrunzc	236	2	addition	addition	NOUN
cord-002994-1zjrunzc	236	3	,	,	PUNCT
cord-002994-1zjrunzc	236	4	they	they	PRON
cord-002994-1zjrunzc	236	5	were	be	AUX
cord-002994-1zjrunzc	236	6	also	also	ADV
cord-002994-1zjrunzc	236	7	higher	high	ADJ
cord-002994-1zjrunzc	236	8	than	than	ADP
cord-002994-1zjrunzc	236	9	denv	denv	ADJ
cord-002994-1zjrunzc	236	10	serotype	serotype	PROPN
cord-002994-1zjrunzc	236	11	2	2	NUM
cord-002994-1zjrunzc	236	12	(	(	PUNCT
cord-002994-1zjrunzc	236	13	denv-2	denv-2	PROPN
cord-002994-1zjrunzc	236	14	)	)	PUNCT
cord-002994-1zjrunzc	236	15	(	(	PUNCT
cord-002994-1zjrunzc	236	16	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	236	17	rank	rank	NOUN
cord-002994-1zjrunzc	236	18	sum	sum	NOUN
cord-002994-1zjrunzc	236	19	test	test	NOUN
cord-002994-1zjrunzc	236	20	,	,	PUNCT
cord-002994-1zjrunzc	236	21	p	p	NOUN
cord-002994-1zjrunzc	236	22	-	-	PUNCT
cord-002994-1zjrunzc	236	23	value	value	NOUN
cord-002994-1zjrunzc	236	24	<	<	X
cord-002994-1zjrunzc	236	25	1.4	1.4	NUM
cord-002994-1zjrunzc	236	26	×	×	NOUN
cord-002994-1zjrunzc	236	27	10	10	NUM
cord-002994-1zjrunzc	236	28	−6	−6	NUM
cord-002994-1zjrunzc	236	29	)	)	PUNCT
cord-002994-1zjrunzc	236	30	.	.	PUNCT
cord-002994-1zjrunzc	237	1	however	however	ADV
cord-002994-1zjrunzc	237	2	,	,	PUNCT
cord-002994-1zjrunzc	237	3	cai	cai	NOUN
cord-002994-1zjrunzc	237	4	values	value	NOUN
cord-002994-1zjrunzc	237	5	of	of	ADP
cord-002994-1zjrunzc	237	6	west	west	PROPN
cord-002994-1zjrunzc	237	7	african	african	ADJ
cord-002994-1zjrunzc	237	8	bagv	bagv	PROPN
cord-002994-1zjrunzc	237	9	isolates	isolate	VERB
cord-002994-1zjrunzc	237	10	were	be	AUX
cord-002994-1zjrunzc	237	11	lower	low	ADJ
cord-002994-1zjrunzc	237	12	than	than	ADP
cord-002994-1zjrunzc	237	13	those	those	PRON
cord-002994-1zjrunzc	237	14	of	of	ADP
cord-002994-1zjrunzc	237	15	denv-1	denv-1	PROPN
cord-002994-1zjrunzc	237	16	(	(	PUNCT
cord-002994-1zjrunzc	237	17	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	237	18	rank	rank	PROPN
cord-002994-1zjrunzc	237	19	sum	sum	NOUN
cord-002994-1zjrunzc	237	20	test	test	NOUN
cord-002994-1zjrunzc	237	21	,	,	PUNCT
cord-002994-1zjrunzc	237	22	w	w	PROPN
cord-002994-1zjrunzc	237	23	=	=	X
cord-002994-1zjrunzc	237	24	231	231	NUM
cord-002994-1zjrunzc	237	25	,	,	PUNCT
cord-002994-1zjrunzc	237	26	p	p	NOUN
cord-002994-1zjrunzc	237	27	-	-	PUNCT
cord-002994-1zjrunzc	237	28	value	value	NOUN
cord-002994-1zjrunzc	237	29	=	=	NOUN
cord-002994-1zjrunzc	237	30	2.869	2.869	NUM
cord-002994-1zjrunzc	237	31	×	×	NOUN
cord-002994-1zjrunzc	237	32	10	10	NUM
cord-002994-1zjrunzc	237	33	−6	−6	NUM
cord-002994-1zjrunzc	237	34	)	)	PUNCT
cord-002994-1zjrunzc	237	35	and	and	CCONJ
cord-002994-1zjrunzc	237	36	comparable	comparable	ADJ
cord-002994-1zjrunzc	237	37	to	to	ADP
cord-002994-1zjrunzc	237	38	cai	cai	NOUN
cord-002994-1zjrunzc	237	39	values	value	NOUN
cord-002994-1zjrunzc	237	40	given	give	VERB
cord-002994-1zjrunzc	237	41	by	by	ADP
cord-002994-1zjrunzc	237	42	denv-3	denv-3	PROPN
cord-002994-1zjrunzc	237	43	and	and	CCONJ
cord-002994-1zjrunzc	237	44	denv-4	denv-4	PROPN
cord-002994-1zjrunzc	237	45	(	(	PUNCT
cord-002994-1zjrunzc	237	46	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	237	47	rank	rank	PROPN
cord-002994-1zjrunzc	237	48	sum	sum	NOUN
cord-002994-1zjrunzc	237	49	test	test	NOUN
cord-002994-1zjrunzc	237	50	,	,	PUNCT
cord-002994-1zjrunzc	237	51	w	w	PROPN
cord-002994-1zjrunzc	237	52	=	=	PROPN
cord-002994-1zjrunzc	237	53	3258	3258	NUM
cord-002994-1zjrunzc	237	54	,	,	PUNCT
cord-002994-1zjrunzc	237	55	p	p	NOUN
cord-002994-1zjrunzc	237	56	-	-	PUNCT
cord-002994-1zjrunzc	237	57	value	value	NOUN
cord-002994-1zjrunzc	237	58	=	=	SYM
cord-002994-1zjrunzc	237	59	0.06477	0.06477	NUM
cord-002994-1zjrunzc	237	60	and	and	CCONJ
cord-002994-1zjrunzc	237	61	w	w	PROPN
cord-002994-1zjrunzc	237	62	=	=	NOUN
cord-002994-1zjrunzc	237	63	824	824	NUM
cord-002994-1zjrunzc	237	64	,	,	PUNCT
cord-002994-1zjrunzc	237	65	p	p	NOUN
cord-002994-1zjrunzc	237	66	-	-	PUNCT
cord-002994-1zjrunzc	237	67	value	value	NOUN
cord-002994-1zjrunzc	237	68	=	=	NOUN
cord-002994-1zjrunzc	237	69	0.3463	0.3463	NUM
cord-002994-1zjrunzc	237	70	,	,	PUNCT
cord-002994-1zjrunzc	237	71	respectively	respectively	ADV
cord-002994-1zjrunzc	237	72	)	)	PUNCT
cord-002994-1zjrunzc	237	73	.	.	PUNCT
cord-002994-1zjrunzc	238	1	interestingly	interestingly	ADV
cord-002994-1zjrunzc	238	2	,	,	PUNCT
cord-002994-1zjrunzc	238	3	cai	cai	NOUN
cord-002994-1zjrunzc	238	4	values	value	NOUN
cord-002994-1zjrunzc	238	5	of	of	ADP
cord-002994-1zjrunzc	238	6	west	west	ADJ
cord-002994-1zjrunzc	238	7	african	african	ADJ
cord-002994-1zjrunzc	238	8	isolates	isolate	NOUN
cord-002994-1zjrunzc	238	9	were	be	AUX
cord-002994-1zjrunzc	238	10	also	also	ADV
cord-002994-1zjrunzc	238	11	significantly	significantly	ADV
cord-002994-1zjrunzc	238	12	higher	high	ADJ
cord-002994-1zjrunzc	238	13	than	than	ADP
cord-002994-1zjrunzc	238	14	those	those	PRON
cord-002994-1zjrunzc	238	15	obtained	obtain	VERB
cord-002994-1zjrunzc	238	16	for	for	ADP
cord-002994-1zjrunzc	238	17	other	other	ADJ
cord-002994-1zjrunzc	238	18	mbfvs	mbfvs	ADJ
cord-002994-1zjrunzc	238	19	well	well	ADV
cord-002994-1zjrunzc	238	20	known	know	VERB
cord-002994-1zjrunzc	238	21	to	to	PART
cord-002994-1zjrunzc	238	22	infect	infect	VERB
cord-002994-1zjrunzc	238	23	human	human	NOUN
cord-002994-1zjrunzc	238	24	such	such	ADJ
cord-002994-1zjrunzc	238	25	as	as	ADP
cord-002994-1zjrunzc	238	26	usuv	usuv	PROPN
cord-002994-1zjrunzc	238	27	(	(	PUNCT
cord-002994-1zjrunzc	238	28	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	238	29	rank	rank	NOUN
cord-002994-1zjrunzc	238	30	sum	sum	NOUN
cord-002994-1zjrunzc	238	31	test	test	NOUN
cord-002994-1zjrunzc	238	32	,	,	PUNCT
cord-002994-1zjrunzc	238	33	p	p	NOUN
cord-002994-1zjrunzc	238	34	-	-	PUNCT
cord-002994-1zjrunzc	238	35	value	value	NOUN
cord-002994-1zjrunzc	238	36	<	<	X
cord-002994-1zjrunzc	238	37	6.796	6.796	NUM
cord-002994-1zjrunzc	238	38	×	×	NOUN
cord-002994-1zjrunzc	238	39	10	10	NUM
cord-002994-1zjrunzc	238	40	−9	−9	NUM
cord-002994-1zjrunzc	238	41	)	)	PUNCT
cord-002994-1zjrunzc	238	42	,	,	PUNCT
cord-002994-1zjrunzc	238	43	wnv	wnv	PROPN
cord-002994-1zjrunzc	238	44	(	(	PUNCT
cord-002994-1zjrunzc	238	45	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	238	46	rank	rank	PROPN
cord-002994-1zjrunzc	238	47	sum	sum	NOUN
cord-002994-1zjrunzc	238	48	test	test	NOUN
cord-002994-1zjrunzc	238	49	,	,	PUNCT
cord-002994-1zjrunzc	238	50	p	p	NOUN
cord-002994-1zjrunzc	238	51	-	-	PUNCT
cord-002994-1zjrunzc	238	52	value	value	NOUN
cord-002994-1zjrunzc	238	53	<	<	X
cord-002994-1zjrunzc	238	54	2.718	2.718	NUM
cord-002994-1zjrunzc	238	55	×	×	NOUN
cord-002994-1zjrunzc	238	56	10	10	NUM
cord-002994-1zjrunzc	238	57	−10	−10	NOUN
cord-002994-1zjrunzc	238	58	)	)	PUNCT
cord-002994-1zjrunzc	238	59	,	,	PUNCT
cord-002994-1zjrunzc	238	60	zikv	zikv	PROPN
cord-002994-1zjrunzc	238	61	(	(	PUNCT
cord-002994-1zjrunzc	238	62	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	238	63	rank	rank	PROPN
cord-002994-1zjrunzc	238	64	sum	sum	NOUN
cord-002994-1zjrunzc	238	65	test	test	NOUN
cord-002994-1zjrunzc	238	66	,	,	PUNCT
cord-002994-1zjrunzc	238	67	p	p	NOUN
cord-002994-1zjrunzc	238	68	-	-	PUNCT
cord-002994-1zjrunzc	238	69	value	value	NOUN
cord-002994-1zjrunzc	238	70	<	<	X
cord-002994-1zjrunzc	238	71	1.67	1.67	NUM
cord-002994-1zjrunzc	238	72	×	×	NOUN
cord-002994-1zjrunzc	238	73	10	10	NUM
cord-002994-1zjrunzc	238	74	−8	−8	NOUN
cord-002994-1zjrunzc	238	75	)	)	PUNCT
cord-002994-1zjrunzc	238	76	and	and	CCONJ
cord-002994-1zjrunzc	238	77	isfs	isfs	PROPN
cord-002994-1zjrunzc	238	78	(	(	PUNCT
cord-002994-1zjrunzc	238	79	means	mean	VERB
cord-002994-1zjrunzc	238	80	cai	cai	NOUN
cord-002994-1zjrunzc	238	81	:	:	PUNCT
cord-002994-1zjrunzc	238	82	1.0015	1.0015	NUM
cord-002994-1zjrunzc	238	83	and	and	CCONJ
cord-002994-1zjrunzc	238	84	1.0006	1.0006	NUM
cord-002994-1zjrunzc	238	85	and	and	CCONJ
cord-002994-1zjrunzc	238	86	median	median	ADJ
cord-002994-1zjrunzc	238	87	cai	cai	NOUN
cord-002994-1zjrunzc	238	88	:	:	PUNCT
cord-002994-1zjrunzc	238	89	1.0015	1.0015	NUM
cord-002994-1zjrunzc	238	90	and	and	CCONJ
cord-002994-1zjrunzc	238	91	1.0006	1.0006	NUM
cord-002994-1zjrunzc	238	92	for	for	ADP
cord-002994-1zjrunzc	238	93	cxfv	cxfv	NOUN
cord-002994-1zjrunzc	238	94	and	and	CCONJ
cord-002994-1zjrunzc	238	95	aefv	aefv	PROPN
cord-002994-1zjrunzc	238	96	,	,	PUNCT
cord-002994-1zjrunzc	238	97	respectively	respectively	ADV
cord-002994-1zjrunzc	238	98	)	)	PUNCT
cord-002994-1zjrunzc	238	99	which	which	PRON
cord-002994-1zjrunzc	238	100	showed	show	VERB
cord-002994-1zjrunzc	238	101	low	low	ADJ
cord-002994-1zjrunzc	238	102	evidence	evidence	NOUN
cord-002994-1zjrunzc	238	103	evidence	evidence	NOUN
cord-002994-1zjrunzc	238	104	of	of	ADP
cord-002994-1zjrunzc	238	105	bagv	bagv	PROPN
cord-002994-1zjrunzc	238	106	adaptation	adaptation	PROPN
cord-002994-1zjrunzc	238	107	to	to	ADP
cord-002994-1zjrunzc	238	108	human	human	PROPN
cord-002994-1zjrunzc	238	109	house	house	NOUN
cord-002994-1zjrunzc	238	110	-	-	PUNCT
cord-002994-1zjrunzc	238	111	keeping	keep	VERB
cord-002994-1zjrunzc	238	112	genes	gene	NOUN
cord-002994-1zjrunzc	238	113	was	be	AUX
cord-002994-1zjrunzc	238	114	analyzed	analyze	VERB
cord-002994-1zjrunzc	238	115	by	by	ADP
cord-002994-1zjrunzc	238	116	calculating	calculate	VERB
cord-002994-1zjrunzc	238	117	cai	cai	NOUN
cord-002994-1zjrunzc	238	118	indices	index	NOUN
cord-002994-1zjrunzc	238	119	using	use	VERB
cord-002994-1zjrunzc	238	120	complete	complete	ADJ
cord-002994-1zjrunzc	238	121	coding	code	VERB
cord-002994-1zjrunzc	238	122	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	238	123	sequences	sequence	NOUN
cord-002994-1zjrunzc	238	124	of	of	ADP
cord-002994-1zjrunzc	238	125	west	west	PROPN
cord-002994-1zjrunzc	238	126	african	african	ADJ
cord-002994-1zjrunzc	238	127	bagv	bagv	PROPN
cord-002994-1zjrunzc	238	128	isolates	isolates	PROPN
cord-002994-1zjrunzc	238	129	and	and	CCONJ
cord-002994-1zjrunzc	238	130	bagv	bagv	NOUN
cord-002994-1zjrunzc	238	131	sequences	sequence	NOUN
cord-002994-1zjrunzc	238	132	available	available	ADJ
cord-002994-1zjrunzc	238	133	from	from	ADP
cord-002994-1zjrunzc	238	134	spain	spain	PROPN
cord-002994-1zjrunzc	238	135	,	,	PUNCT
cord-002994-1zjrunzc	238	136	in	in	ADP
cord-002994-1zjrunzc	238	137	comparison	comparison	NOUN
cord-002994-1zjrunzc	238	138	to	to	ADP
cord-002994-1zjrunzc	238	139	other	other	ADJ
cord-002994-1zjrunzc	238	140	mbfvs	mbfvs	ADJ
cord-002994-1zjrunzc	238	141	such	such	ADJ
cord-002994-1zjrunzc	238	142	as	as	ADP
cord-002994-1zjrunzc	238	143	denv	denv	ADJ
cord-002994-1zjrunzc	238	144	,	,	PUNCT
cord-002994-1zjrunzc	238	145	usuv	usuv	ADJ
cord-002994-1zjrunzc	238	146	,	,	PUNCT
cord-002994-1zjrunzc	238	147	wnv	wnv	NOUN
cord-002994-1zjrunzc	238	148	,	,	PUNCT
cord-002994-1zjrunzc	238	149	zikv	zikv	PROPN
cord-002994-1zjrunzc	238	150	and	and	CCONJ
cord-002994-1zjrunzc	238	151	yfv	yfv	PROPN
cord-002994-1zjrunzc	238	152	,	,	PUNCT
cord-002994-1zjrunzc	238	153	nkv	nkv	ADJ
cord-002994-1zjrunzc	238	154	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	238	155	(	(	PUNCT
cord-002994-1zjrunzc	238	156	modv	modv	NOUN
cord-002994-1zjrunzc	238	157	and	and	CCONJ
cord-002994-1zjrunzc	238	158	rbv	rbv	PROPN
cord-002994-1zjrunzc	238	159	)	)	PUNCT
cord-002994-1zjrunzc	238	160	and	and	CCONJ
cord-002994-1zjrunzc	238	161	isfs	isfs	PROPN
cord-002994-1zjrunzc	238	162	(	(	PUNCT
cord-002994-1zjrunzc	238	163	cxfv	cxfv	PROPN
cord-002994-1zjrunzc	238	164	and	and	CCONJ
cord-002994-1zjrunzc	238	165	aefv	aefv	PROPN
cord-002994-1zjrunzc	238	166	)	)	PUNCT
cord-002994-1zjrunzc	238	167	.	.	PUNCT
cord-002994-1zjrunzc	239	1	cai	cai	NOUN
cord-002994-1zjrunzc	239	2	values	value	NOUN
cord-002994-1zjrunzc	239	3	>	>	SYM
cord-002994-1zjrunzc	239	4	1	1	NUM
cord-002994-1zjrunzc	239	5	were	be	AUX
cord-002994-1zjrunzc	239	6	obtained	obtain	VERB
cord-002994-1zjrunzc	239	7	for	for	ADP
cord-002994-1zjrunzc	239	8	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	239	9	sequences	sequence	NOUN
cord-002994-1zjrunzc	239	10	of	of	ADP
cord-002994-1zjrunzc	239	11	all	all	DET
cord-002994-1zjrunzc	239	12	bagv	bagv	NOUN
cord-002994-1zjrunzc	239	13	isolates	isolate	VERB
cord-002994-1zjrunzc	239	14	.	.	PUNCT
cord-002994-1zjrunzc	240	1	thus	thus	ADV
cord-002994-1zjrunzc	240	2	,	,	PUNCT
cord-002994-1zjrunzc	240	3	there	there	PRON
cord-002994-1zjrunzc	240	4	is	be	VERB
cord-002994-1zjrunzc	240	5	evidence	evidence	NOUN
cord-002994-1zjrunzc	240	6	that	that	SCONJ
cord-002994-1zjrunzc	240	7	bagv	bagv	NOUN
cord-002994-1zjrunzc	240	8	could	could	AUX
cord-002994-1zjrunzc	240	9	have	have	AUX
cord-002994-1zjrunzc	240	10	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	240	11	to	to	ADP
cord-002994-1zjrunzc	240	12	the	the	DET
cord-002994-1zjrunzc	240	13	human	human	ADJ
cord-002994-1zjrunzc	240	14	genes	gene	NOUN
cord-002994-1zjrunzc	240	15	(	(	PUNCT
cord-002994-1zjrunzc	240	16	figure	figure	NOUN
cord-002994-1zjrunzc	240	17	9	9	NUM
cord-002994-1zjrunzc	240	18	)	)	PUNCT
cord-002994-1zjrunzc	240	19	.	.	PUNCT
cord-002994-1zjrunzc	241	1	modv(mean	modv(mean	PROPN
cord-002994-1zjrunzc	241	2	cai	cai	PROPN
cord-002994-1zjrunzc	241	3	:	:	PUNCT
cord-002994-1zjrunzc	241	4	1.072	1.072	NUM
cord-002994-1zjrunzc	241	5	and	and	CCONJ
cord-002994-1zjrunzc	241	6	median	median	ADJ
cord-002994-1zjrunzc	241	7	cai	cai	PROPN
cord-002994-1zjrunzc	241	8	:	:	PUNCT
cord-002994-1zjrunzc	241	9	1.072	1.072	NUM
cord-002994-1zjrunzc	241	10	)	)	PUNCT
cord-002994-1zjrunzc	241	11	,	,	PUNCT
cord-002994-1zjrunzc	241	12	rbv	rbv	PROPN
cord-002994-1zjrunzc	241	13	(	(	PUNCT
cord-002994-1zjrunzc	241	14	mean	mean	PROPN
cord-002994-1zjrunzc	241	15	cai	cai	PROPN
cord-002994-1zjrunzc	241	16	:	:	PUNCT
cord-002994-1zjrunzc	241	17	1.059	1.059	NUM
cord-002994-1zjrunzc	241	18	and	and	CCONJ
cord-002994-1zjrunzc	241	19	median	median	ADJ
cord-002994-1zjrunzc	241	20	cai	cai	PROPN
cord-002994-1zjrunzc	241	21	:	:	PUNCT
cord-002994-1zjrunzc	241	22	1.059	1.059	NUM
cord-002994-1zjrunzc	241	23	)	)	PUNCT
cord-002994-1zjrunzc	241	24	and	and	CCONJ
cord-002994-1zjrunzc	241	25	yfv	yfv	PROPN
cord-002994-1zjrunzc	241	26	(	(	PUNCT
cord-002994-1zjrunzc	241	27	mean	mean	PROPN
cord-002994-1zjrunzc	241	28	cai	cai	NOUN
cord-002994-1zjrunzc	241	29	:	:	PUNCT
cord-002994-1zjrunzc	241	30	1.075	1.075	NUM
cord-002994-1zjrunzc	241	31	and	and	CCONJ
cord-002994-1zjrunzc	241	32	median	median	ADJ
cord-002994-1zjrunzc	241	33	cai	cai	NOUN
cord-002994-1zjrunzc	241	34	:	:	PUNCT
cord-002994-1zjrunzc	241	35	1.072	1.072	NUM
cord-002994-1zjrunzc	241	36	)	)	PUNCT
cord-002994-1zjrunzc	241	37	showed	show	VERB
cord-002994-1zjrunzc	241	38	the	the	DET
cord-002994-1zjrunzc	241	39	highest	high	ADJ
cord-002994-1zjrunzc	241	40	cai	cai	NOUN
cord-002994-1zjrunzc	241	41	values	value	NOUN
cord-002994-1zjrunzc	241	42	for	for	ADP
cord-002994-1zjrunzc	241	43	human	human	ADJ
cord-002994-1zjrunzc	241	44	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	241	45	genes	gene	NOUN
cord-002994-1zjrunzc	241	46	and	and	CCONJ
cord-002994-1zjrunzc	241	47	were	be	AUX
cord-002994-1zjrunzc	241	48	significantly	significantly	ADV
cord-002994-1zjrunzc	241	49	different	different	ADJ
cord-002994-1zjrunzc	241	50	to	to	ADP
cord-002994-1zjrunzc	241	51	spanish	spanish	ADJ
cord-002994-1zjrunzc	241	52	and	and	CCONJ
cord-002994-1zjrunzc	241	53	west	west	PROPN
cord-002994-1zjrunzc	241	54	african	african	ADJ
cord-002994-1zjrunzc	241	55	bagv	bagv	PROPN
cord-002994-1zjrunzc	241	56	isolates	isolate	VERB
cord-002994-1zjrunzc	241	57	(	(	PUNCT
cord-002994-1zjrunzc	241	58	wilcoxon	wilcoxon	ADJ
cord-002994-1zjrunzc	241	59	rank	rank	NOUN
cord-002994-1zjrunzc	241	60	sum	sum	NOUN
cord-002994-1zjrunzc	241	61	test	test	NOUN
cord-002994-1zjrunzc	241	62	,	,	PUNCT
cord-002994-1zjrunzc	241	63	p	p	NOUN
cord-002994-1zjrunzc	241	64	-	-	PUNCT
cord-002994-1zjrunzc	241	65	values	value	NOUN
cord-002994-1zjrunzc	241	66	ranging	range	VERB
cord-002994-1zjrunzc	241	67	from	from	ADP
cord-002994-1zjrunzc	241	68	0.0001	0.0001	NUM
cord-002994-1zjrunzc	241	69	to	to	ADP
cord-002994-1zjrunzc	241	70	1.028	1.028	NUM
cord-002994-1zjrunzc	241	71	×	×	NOUN
cord-002994-1zjrunzc	241	72	10	10	NUM
cord-002994-1zjrunzc	241	73	−7	−7	NUM
cord-002994-1zjrunzc	241	74	)	)	PUNCT
cord-002994-1zjrunzc	241	75	.	.	PUNCT
cord-002994-1zjrunzc	242	1	compared	compare	VERB
cord-002994-1zjrunzc	242	2	to	to	ADP
cord-002994-1zjrunzc	242	3	those	those	PRON
cord-002994-1zjrunzc	242	4	of	of	ADP
cord-002994-1zjrunzc	242	5	spanish	spanish	ADJ
cord-002994-1zjrunzc	242	6	isolates	isolate	NOUN
cord-002994-1zjrunzc	242	7	,	,	PUNCT
cord-002994-1zjrunzc	242	8	sequences	sequence	NOUN
cord-002994-1zjrunzc	242	9	of	of	ADP
cord-002994-1zjrunzc	242	10	west	west	PROPN
cord-002994-1zjrunzc	242	11	african	african	PROPN
cord-002994-1zjrunzc	242	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	242	13	isolates	isolate	VERB
cord-002994-1zjrunzc	242	14	presented	present	VERB
cord-002994-1zjrunzc	242	15	significantly	significantly	ADV
cord-002994-1zjrunzc	242	16	higher	high	ADJ
cord-002994-1zjrunzc	242	17	cai	cai	NOUN
cord-002994-1zjrunzc	242	18	values	value	NOUN
cord-002994-1zjrunzc	242	19	(	(	PUNCT
cord-002994-1zjrunzc	242	20	mean	mean	ADJ
cord-002994-1zjrunzc	242	21	cai	cai	NOUN
cord-002994-1zjrunzc	242	22	:	:	PUNCT
cord-002994-1zjrunzc	242	23	1.044	1.044	NUM
cord-002994-1zjrunzc	242	24	and	and	CCONJ
cord-002994-1zjrunzc	242	25	median	median	ADJ
cord-002994-1zjrunzc	242	26	cai	cai	NOUN
cord-002994-1zjrunzc	242	27	:	:	PUNCT
cord-002994-1zjrunzc	242	28	1.044	1.044	NUM
cord-002994-1zjrunzc	242	29	,	,	PUNCT
cord-002994-1zjrunzc	242	30	wilcoxon	wilcoxon	ADJ
cord-002994-1zjrunzc	242	31	rank	rank	NOUN
cord-002994-1zjrunzc	242	32	sum	sum	NOUN
cord-002994-1zjrunzc	242	33	test	test	NOUN
cord-002994-1zjrunzc	242	34	,	,	PUNCT
cord-002994-1zjrunzc	242	35	p	p	NOUN
cord-002994-1zjrunzc	242	36	-	-	PUNCT
cord-002994-1zjrunzc	242	37	value	value	NOUN
cord-002994-1zjrunzc	242	38	<	<	X
cord-002994-1zjrunzc	242	39	0.002	0.002	NUM
cord-002994-1zjrunzc	242	40	)	)	PUNCT
cord-002994-1zjrunzc	242	41	.	.	PUNCT
cord-002994-1zjrunzc	243	1	in	in	ADP
cord-002994-1zjrunzc	243	2	addition	addition	NOUN
cord-002994-1zjrunzc	243	3	,	,	PUNCT
cord-002994-1zjrunzc	243	4	they	they	PRON
cord-002994-1zjrunzc	243	5	were	be	AUX
cord-002994-1zjrunzc	243	6	also	also	ADV
cord-002994-1zjrunzc	243	7	higher	high	ADJ
cord-002994-1zjrunzc	243	8	than	than	ADP
cord-002994-1zjrunzc	243	9	denv	denv	ADJ
cord-002994-1zjrunzc	243	10	serotype	serotype	PROPN
cord-002994-1zjrunzc	243	11	2	2	NUM
cord-002994-1zjrunzc	243	12	(	(	PUNCT
cord-002994-1zjrunzc	243	13	denv-2	denv-2	PROPN
cord-002994-1zjrunzc	243	14	)	)	PUNCT
cord-002994-1zjrunzc	243	15	(	(	PUNCT
cord-002994-1zjrunzc	243	16	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	243	17	rank	rank	NOUN
cord-002994-1zjrunzc	243	18	sum	sum	NOUN
cord-002994-1zjrunzc	243	19	test	test	NOUN
cord-002994-1zjrunzc	243	20	,	,	PUNCT
cord-002994-1zjrunzc	243	21	p	p	NOUN
cord-002994-1zjrunzc	243	22	-	-	PUNCT
cord-002994-1zjrunzc	243	23	value	value	NOUN
cord-002994-1zjrunzc	243	24	<	<	X
cord-002994-1zjrunzc	243	25	1.4	1.4	NUM
cord-002994-1zjrunzc	243	26	×	×	NOUN
cord-002994-1zjrunzc	243	27	10	10	NUM
cord-002994-1zjrunzc	243	28	−6	−6	NUM
cord-002994-1zjrunzc	243	29	)	)	PUNCT
cord-002994-1zjrunzc	243	30	.	.	PUNCT
cord-002994-1zjrunzc	244	1	however	however	ADV
cord-002994-1zjrunzc	244	2	,	,	PUNCT
cord-002994-1zjrunzc	244	3	cai	cai	NOUN
cord-002994-1zjrunzc	244	4	values	value	NOUN
cord-002994-1zjrunzc	244	5	of	of	ADP
cord-002994-1zjrunzc	244	6	west	west	PROPN
cord-002994-1zjrunzc	244	7	african	african	ADJ
cord-002994-1zjrunzc	244	8	bagv	bagv	PROPN
cord-002994-1zjrunzc	244	9	isolates	isolate	VERB
cord-002994-1zjrunzc	244	10	were	be	AUX
cord-002994-1zjrunzc	244	11	lower	low	ADJ
cord-002994-1zjrunzc	244	12	than	than	ADP
cord-002994-1zjrunzc	244	13	those	those	PRON
cord-002994-1zjrunzc	244	14	of	of	ADP
cord-002994-1zjrunzc	244	15	denv-1	denv-1	PROPN
cord-002994-1zjrunzc	244	16	(	(	PUNCT
cord-002994-1zjrunzc	244	17	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	244	18	rank	rank	PROPN
cord-002994-1zjrunzc	244	19	sum	sum	NOUN
cord-002994-1zjrunzc	244	20	test	test	NOUN
cord-002994-1zjrunzc	244	21	,	,	PUNCT
cord-002994-1zjrunzc	244	22	w	w	PROPN
cord-002994-1zjrunzc	244	23	=	=	X
cord-002994-1zjrunzc	244	24	231	231	NUM
cord-002994-1zjrunzc	244	25	,	,	PUNCT
cord-002994-1zjrunzc	244	26	p	p	NOUN
cord-002994-1zjrunzc	244	27	-	-	PUNCT
cord-002994-1zjrunzc	244	28	value	value	NOUN
cord-002994-1zjrunzc	244	29	=	=	NOUN
cord-002994-1zjrunzc	244	30	2.869	2.869	NUM
cord-002994-1zjrunzc	244	31	×	×	NOUN
cord-002994-1zjrunzc	244	32	10	10	NUM
cord-002994-1zjrunzc	244	33	−6	−6	NUM
cord-002994-1zjrunzc	244	34	)	)	PUNCT
cord-002994-1zjrunzc	244	35	and	and	CCONJ
cord-002994-1zjrunzc	244	36	comparable	comparable	ADJ
cord-002994-1zjrunzc	244	37	to	to	ADP
cord-002994-1zjrunzc	244	38	cai	cai	NOUN
cord-002994-1zjrunzc	244	39	values	value	NOUN
cord-002994-1zjrunzc	244	40	given	give	VERB
cord-002994-1zjrunzc	244	41	by	by	ADP
cord-002994-1zjrunzc	244	42	denv-3	denv-3	PROPN
cord-002994-1zjrunzc	244	43	and	and	CCONJ
cord-002994-1zjrunzc	244	44	denv-4	denv-4	PROPN
cord-002994-1zjrunzc	244	45	(	(	PUNCT
cord-002994-1zjrunzc	244	46	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	244	47	rank	rank	PROPN
cord-002994-1zjrunzc	244	48	sum	sum	NOUN
cord-002994-1zjrunzc	244	49	test	test	NOUN
cord-002994-1zjrunzc	244	50	,	,	PUNCT
cord-002994-1zjrunzc	244	51	w	w	PROPN
cord-002994-1zjrunzc	244	52	=	=	PROPN
cord-002994-1zjrunzc	244	53	3258	3258	NUM
cord-002994-1zjrunzc	244	54	,	,	PUNCT
cord-002994-1zjrunzc	244	55	p	p	NOUN
cord-002994-1zjrunzc	244	56	-	-	PUNCT
cord-002994-1zjrunzc	244	57	value	value	NOUN
cord-002994-1zjrunzc	244	58	=	=	SYM
cord-002994-1zjrunzc	244	59	0.06477	0.06477	NUM
cord-002994-1zjrunzc	244	60	and	and	CCONJ
cord-002994-1zjrunzc	244	61	w	w	PROPN
cord-002994-1zjrunzc	244	62	=	=	NOUN
cord-002994-1zjrunzc	244	63	824	824	NUM
cord-002994-1zjrunzc	244	64	,	,	PUNCT
cord-002994-1zjrunzc	244	65	p	p	NOUN
cord-002994-1zjrunzc	244	66	-	-	PUNCT
cord-002994-1zjrunzc	244	67	value	value	NOUN
cord-002994-1zjrunzc	244	68	=	=	NOUN
cord-002994-1zjrunzc	244	69	0.3463	0.3463	NUM
cord-002994-1zjrunzc	244	70	,	,	PUNCT
cord-002994-1zjrunzc	244	71	respectively	respectively	ADV
cord-002994-1zjrunzc	244	72	)	)	PUNCT
cord-002994-1zjrunzc	244	73	.	.	PUNCT
cord-002994-1zjrunzc	245	1	interestingly	interestingly	ADV
cord-002994-1zjrunzc	245	2	,	,	PUNCT
cord-002994-1zjrunzc	245	3	cai	cai	NOUN
cord-002994-1zjrunzc	245	4	values	value	NOUN
cord-002994-1zjrunzc	245	5	of	of	ADP
cord-002994-1zjrunzc	245	6	west	west	ADJ
cord-002994-1zjrunzc	245	7	african	african	ADJ
cord-002994-1zjrunzc	245	8	isolates	isolate	NOUN
cord-002994-1zjrunzc	245	9	were	be	AUX
cord-002994-1zjrunzc	245	10	also	also	ADV
cord-002994-1zjrunzc	245	11	significantly	significantly	ADV
cord-002994-1zjrunzc	245	12	higher	high	ADJ
cord-002994-1zjrunzc	245	13	than	than	ADP
cord-002994-1zjrunzc	245	14	those	those	PRON
cord-002994-1zjrunzc	245	15	obtained	obtain	VERB
cord-002994-1zjrunzc	245	16	for	for	ADP
cord-002994-1zjrunzc	245	17	other	other	ADJ
cord-002994-1zjrunzc	245	18	mbfvs	mbfvs	ADJ
cord-002994-1zjrunzc	245	19	well	well	ADV
cord-002994-1zjrunzc	245	20	known	know	VERB
cord-002994-1zjrunzc	245	21	to	to	PART
cord-002994-1zjrunzc	245	22	infect	infect	VERB
cord-002994-1zjrunzc	245	23	human	human	NOUN
cord-002994-1zjrunzc	245	24	such	such	ADJ
cord-002994-1zjrunzc	245	25	as	as	ADP
cord-002994-1zjrunzc	245	26	usuv	usuv	PROPN
cord-002994-1zjrunzc	245	27	(	(	PUNCT
cord-002994-1zjrunzc	245	28	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	245	29	rank	rank	NOUN
cord-002994-1zjrunzc	245	30	sum	sum	NOUN
cord-002994-1zjrunzc	245	31	test	test	NOUN
cord-002994-1zjrunzc	245	32	,	,	PUNCT
cord-002994-1zjrunzc	245	33	p	p	NOUN
cord-002994-1zjrunzc	245	34	-	-	PUNCT
cord-002994-1zjrunzc	245	35	value	value	NOUN
cord-002994-1zjrunzc	245	36	<	<	X
cord-002994-1zjrunzc	245	37	6.796	6.796	NUM
cord-002994-1zjrunzc	245	38	×	×	NOUN
cord-002994-1zjrunzc	245	39	10	10	NUM
cord-002994-1zjrunzc	245	40	−9	−9	NUM
cord-002994-1zjrunzc	245	41	)	)	PUNCT
cord-002994-1zjrunzc	245	42	,	,	PUNCT
cord-002994-1zjrunzc	245	43	wnv	wnv	PROPN
cord-002994-1zjrunzc	245	44	(	(	PUNCT
cord-002994-1zjrunzc	245	45	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	245	46	rank	rank	PROPN
cord-002994-1zjrunzc	245	47	sum	sum	NOUN
cord-002994-1zjrunzc	245	48	test	test	NOUN
cord-002994-1zjrunzc	245	49	,	,	PUNCT
cord-002994-1zjrunzc	245	50	p	p	NOUN
cord-002994-1zjrunzc	245	51	-	-	PUNCT
cord-002994-1zjrunzc	245	52	value	value	NOUN
cord-002994-1zjrunzc	245	53	<	<	X
cord-002994-1zjrunzc	245	54	2.718	2.718	NUM
cord-002994-1zjrunzc	245	55	×	×	NOUN
cord-002994-1zjrunzc	245	56	10	10	NUM
cord-002994-1zjrunzc	245	57	−10	−10	NOUN
cord-002994-1zjrunzc	245	58	)	)	PUNCT
cord-002994-1zjrunzc	245	59	,	,	PUNCT
cord-002994-1zjrunzc	245	60	zikv	zikv	PROPN
cord-002994-1zjrunzc	245	61	(	(	PUNCT
cord-002994-1zjrunzc	245	62	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	245	63	rank	rank	PROPN
cord-002994-1zjrunzc	245	64	sum	sum	NOUN
cord-002994-1zjrunzc	245	65	test	test	NOUN
cord-002994-1zjrunzc	245	66	,	,	PUNCT
cord-002994-1zjrunzc	245	67	p	p	NOUN
cord-002994-1zjrunzc	245	68	-	-	PUNCT
cord-002994-1zjrunzc	245	69	value	value	NOUN
cord-002994-1zjrunzc	245	70	<	<	X
cord-002994-1zjrunzc	245	71	1.67	1.67	NUM
cord-002994-1zjrunzc	245	72	×	×	NOUN
cord-002994-1zjrunzc	245	73	10	10	NUM
cord-002994-1zjrunzc	245	74	−8	−8	NOUN
cord-002994-1zjrunzc	245	75	)	)	PUNCT
cord-002994-1zjrunzc	245	76	and	and	CCONJ
cord-002994-1zjrunzc	245	77	isfs	isfs	PROPN
cord-002994-1zjrunzc	245	78	(	(	PUNCT
cord-002994-1zjrunzc	245	79	means	mean	VERB
cord-002994-1zjrunzc	245	80	cai	cai	NOUN
cord-002994-1zjrunzc	245	81	:	:	PUNCT
cord-002994-1zjrunzc	245	82	1.0015	1.0015	NUM
cord-002994-1zjrunzc	245	83	and	and	CCONJ
cord-002994-1zjrunzc	245	84	1.0006	1.0006	NUM
cord-002994-1zjrunzc	245	85	and	and	CCONJ
cord-002994-1zjrunzc	245	86	median	median	ADJ
cord-002994-1zjrunzc	245	87	cai	cai	NOUN
cord-002994-1zjrunzc	245	88	:	:	PUNCT
cord-002994-1zjrunzc	245	89	1.0015	1.0015	NUM
cord-002994-1zjrunzc	245	90	and	and	CCONJ
cord-002994-1zjrunzc	245	91	1.0006	1.0006	NUM
cord-002994-1zjrunzc	245	92	for	for	ADP
cord-002994-1zjrunzc	245	93	cxfv	cxfv	NOUN
cord-002994-1zjrunzc	245	94	and	and	CCONJ
cord-002994-1zjrunzc	245	95	aefv	aefv	PROPN
cord-002994-1zjrunzc	245	96	,	,	PUNCT
cord-002994-1zjrunzc	245	97	respectively	respectively	ADV
cord-002994-1zjrunzc	245	98	)	)	PUNCT
cord-002994-1zjrunzc	245	99	which	which	PRON
cord-002994-1zjrunzc	245	100	showed	show	VERB
cord-002994-1zjrunzc	245	101	low	low	ADJ
cord-002994-1zjrunzc	245	102	evidence	evidence	NOUN
cord-002994-1zjrunzc	245	103	for	for	ADP
cord-002994-1zjrunzc	245	104	codon	codon	NOUN
cord-002994-1zjrunzc	245	105	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	245	106	towards	towards	ADP
cord-002994-1zjrunzc	245	107	human	human	ADJ
cord-002994-1zjrunzc	245	108	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	245	109	genes	gene	NOUN
cord-002994-1zjrunzc	245	110	(	(	PUNCT
cord-002994-1zjrunzc	245	111	wilcoxon	wilcoxon	PROPN
cord-002994-1zjrunzc	245	112	rank	rank	NOUN
cord-002994-1zjrunzc	245	113	sum	sum	NOUN
cord-002994-1zjrunzc	245	114	test	test	NOUN
cord-002994-1zjrunzc	245	115	,	,	PUNCT
cord-002994-1zjrunzc	245	116	p	p	NOUN
cord-002994-1zjrunzc	245	117	-	-	PUNCT
cord-002994-1zjrunzc	245	118	value	value	NOUN
cord-002994-1zjrunzc	245	119	<	<	X
cord-002994-1zjrunzc	245	120	2.328	2.328	NUM
cord-002994-1zjrunzc	245	121	×	×	NOUN
cord-002994-1zjrunzc	245	122	10	10	NUM
cord-002994-1zjrunzc	245	123	−16	−16	NUM
cord-002994-1zjrunzc	245	124	)	)	PUNCT
cord-002994-1zjrunzc	245	125	.	.	PUNCT
cord-002994-1zjrunzc	246	1	although	although	SCONJ
cord-002994-1zjrunzc	246	2	cai	cai	NOUN
cord-002994-1zjrunzc	246	3	results	result	VERB
cord-002994-1zjrunzc	246	4	for	for	ADP
cord-002994-1zjrunzc	246	5	isfs	isfs	PROPN
cord-002994-1zjrunzc	246	6	were	be	AUX
cord-002994-1zjrunzc	246	7	significantly	significantly	ADV
cord-002994-1zjrunzc	246	8	lower	low	ADJ
cord-002994-1zjrunzc	246	9	to	to	ADP
cord-002994-1zjrunzc	246	10	human	human	ADJ
cord-002994-1zjrunzc	246	11	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	246	12	genes	gene	NOUN
cord-002994-1zjrunzc	246	13	,	,	PUNCT
cord-002994-1zjrunzc	246	14	we	we	PRON
cord-002994-1zjrunzc	246	15	did	do	AUX
cord-002994-1zjrunzc	246	16	not	not	PART
cord-002994-1zjrunzc	246	17	find	find	VERB
cord-002994-1zjrunzc	246	18	any	any	DET
cord-002994-1zjrunzc	246	19	significant	significant	ADJ
cord-002994-1zjrunzc	246	20	difference	difference	NOUN
cord-002994-1zjrunzc	246	21	between	between	ADP
cord-002994-1zjrunzc	246	22	cxfv	cxfv	NOUN
cord-002994-1zjrunzc	246	23	and	and	CCONJ
cord-002994-1zjrunzc	246	24	aefv	aefv	PROPN
cord-002994-1zjrunzc	246	25	codon	codon	PROPN
cord-002994-1zjrunzc	246	26	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	246	27	.	.	PUNCT
cord-002994-1zjrunzc	247	1	compared	compare	VERB
cord-002994-1zjrunzc	247	2	to	to	ADP
cord-002994-1zjrunzc	247	3	codon	codon	NOUN
cord-002994-1zjrunzc	247	4	usage	usage	NOUN
cord-002994-1zjrunzc	247	5	of	of	ADP
cord-002994-1zjrunzc	247	6	human	human	ADJ
cord-002994-1zjrunzc	247	7	genes	gene	NOUN
cord-002994-1zjrunzc	247	8	,	,	PUNCT
cord-002994-1zjrunzc	247	9	sequences	sequence	NOUN
cord-002994-1zjrunzc	247	10	of	of	ADP
cord-002994-1zjrunzc	247	11	tobacco	tobacco	NOUN
cord-002994-1zjrunzc	247	12	mosaic	mosaic	NOUN
cord-002994-1zjrunzc	247	13	virus	virus	PROPN
cord-002994-1zjrunzc	247	14	(	(	PUNCT
cord-002994-1zjrunzc	247	15	tmv	tmv	PROPN
cord-002994-1zjrunzc	247	16	)	)	PUNCT
cord-002994-1zjrunzc	247	17	showed	show	VERB
cord-002994-1zjrunzc	247	18	mean	mean	ADJ
cord-002994-1zjrunzc	247	19	and	and	CCONJ
cord-002994-1zjrunzc	247	20	median	median	ADJ
cord-002994-1zjrunzc	247	21	cai	cai	NOUN
cord-002994-1zjrunzc	247	22	values	value	NOUN
cord-002994-1zjrunzc	247	23	of	of	ADP
cord-002994-1zjrunzc	247	24	0.9587	0.9587	NUM
cord-002994-1zjrunzc	247	25	and	and	CCONJ
cord-002994-1zjrunzc	247	26	0.9592	0.9592	NUM
cord-002994-1zjrunzc	247	27	,	,	PUNCT
cord-002994-1zjrunzc	247	28	respectively	respectively	ADV
cord-002994-1zjrunzc	247	29	.	.	PUNCT
cord-002994-1zjrunzc	248	1	with	with	ADP
cord-002994-1zjrunzc	248	2	an	an	DET
cord-002994-1zjrunzc	248	3	increasing	increase	VERB
cord-002994-1zjrunzc	248	4	number	number	NOUN
cord-002994-1zjrunzc	248	5	of	of	ADP
cord-002994-1zjrunzc	248	6	emergent	emergent	NOUN
cord-002994-1zjrunzc	248	7	and	and	CCONJ
cord-002994-1zjrunzc	248	8	re	re	ADJ
cord-002994-1zjrunzc	248	9	-	-	ADJ
cord-002994-1zjrunzc	248	10	emergent	emergent	ADJ
cord-002994-1zjrunzc	248	11	pathogens	pathogen	NOUN
cord-002994-1zjrunzc	248	12	involved	involve	VERB
cord-002994-1zjrunzc	248	13	in	in	ADP
cord-002994-1zjrunzc	248	14	human	human	ADJ
cord-002994-1zjrunzc	248	15	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	248	16	,	,	PUNCT
cord-002994-1zjrunzc	248	17	it	it	PRON
cord-002994-1zjrunzc	248	18	is	be	AUX
cord-002994-1zjrunzc	248	19	important	important	ADJ
cord-002994-1zjrunzc	248	20	to	to	PART
cord-002994-1zjrunzc	248	21	try	try	VERB
cord-002994-1zjrunzc	248	22	to	to	PART
cord-002994-1zjrunzc	248	23	better	well	ADV
cord-002994-1zjrunzc	248	24	understand	understand	VERB
cord-002994-1zjrunzc	248	25	which	which	PRON
cord-002994-1zjrunzc	248	26	viruses	virus	NOUN
cord-002994-1zjrunzc	248	27	have	have	VERB
cord-002994-1zjrunzc	248	28	a	a	DET
cord-002994-1zjrunzc	248	29	potential	potential	NOUN
cord-002994-1zjrunzc	248	30	to	to	PART
cord-002994-1zjrunzc	248	31	emerge	emerge	VERB
cord-002994-1zjrunzc	248	32	causing	cause	VERB
cord-002994-1zjrunzc	248	33	human	human	ADJ
cord-002994-1zjrunzc	248	34	infection	infection	NOUN
cord-002994-1zjrunzc	248	35	in	in	ADP
cord-002994-1zjrunzc	248	36	the	the	DET
cord-002994-1zjrunzc	248	37	future	future	NOUN
cord-002994-1zjrunzc	248	38	.	.	PUNCT
cord-002994-1zjrunzc	249	1	since	since	SCONJ
cord-002994-1zjrunzc	249	2	its	its	PRON
cord-002994-1zjrunzc	249	3	first	first	ADJ
cord-002994-1zjrunzc	249	4	isolation	isolation	NOUN
cord-002994-1zjrunzc	249	5	,	,	PUNCT
cord-002994-1zjrunzc	249	6	bagv	bagv	PROPN
cord-002994-1zjrunzc	249	7	was	be	AUX
cord-002994-1zjrunzc	249	8	only	only	ADV
cord-002994-1zjrunzc	249	9	detected	detect	VERB
cord-002994-1zjrunzc	249	10	in	in	ADP
cord-002994-1zjrunzc	249	11	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	249	12	pools	pool	NOUN
cord-002994-1zjrunzc	249	13	collected	collect	VERB
cord-002994-1zjrunzc	249	14	in	in	ADP
cord-002994-1zjrunzc	249	15	the	the	DET
cord-002994-1zjrunzc	249	16	field	field	NOUN
cord-002994-1zjrunzc	249	17	during	during	ADP
cord-002994-1zjrunzc	249	18	entomological	entomological	ADJ
cord-002994-1zjrunzc	249	19	investigations	investigation	NOUN
cord-002994-1zjrunzc	249	20	in	in	ADP
cord-002994-1zjrunzc	249	21	west	west	PROPN
cord-002994-1zjrunzc	249	22	and	and	CCONJ
cord-002994-1zjrunzc	249	23	central	central	PROPN
cord-002994-1zjrunzc	249	24	africa	africa	PROPN
cord-002994-1zjrunzc	249	25	and	and	CCONJ
cord-002994-1zjrunzc	249	26	in	in	ADP
cord-002994-1zjrunzc	249	27	india	india	PROPN
cord-002994-1zjrunzc	250	1	[	[	PUNCT
cord-002994-1zjrunzc	250	2	12	12	NUM
cord-002994-1zjrunzc	250	3	]	]	PUNCT
cord-002994-1zjrunzc	250	4	.	.	PUNCT
cord-002994-1zjrunzc	251	1	however	however	ADV
cord-002994-1zjrunzc	251	2	,	,	PUNCT
cord-002994-1zjrunzc	251	3	in	in	ADP
cord-002994-1zjrunzc	251	4	2010	2010	NUM
cord-002994-1zjrunzc	251	5	,	,	PUNCT
cord-002994-1zjrunzc	251	6	bagv	bagv	PROPN
cord-002994-1zjrunzc	251	7	was	be	AUX
cord-002994-1zjrunzc	251	8	identified	identify	VERB
cord-002994-1zjrunzc	251	9	as	as	ADP
cord-002994-1zjrunzc	251	10	the	the	DET
cord-002994-1zjrunzc	251	11	cause	cause	NOUN
cord-002994-1zjrunzc	251	12	of	of	ADP
cord-002994-1zjrunzc	251	13	an	an	DET
cord-002994-1zjrunzc	251	14	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	251	15	outbreak	outbreak	NOUN
cord-002994-1zjrunzc	251	16	in	in	ADP
cord-002994-1zjrunzc	251	17	wild	wild	ADJ
cord-002994-1zjrunzc	251	18	birds	bird	NOUN
cord-002994-1zjrunzc	251	19	circulating	circulate	VERB
cord-002994-1zjrunzc	251	20	in	in	ADP
cord-002994-1zjrunzc	251	21	southern	southern	ADJ
cord-002994-1zjrunzc	251	22	spain	spain	PROPN
cord-002994-1zjrunzc	251	23	[	[	PUNCT
cord-002994-1zjrunzc	251	24	9	9	NUM
cord-002994-1zjrunzc	251	25	]	]	PUNCT
cord-002994-1zjrunzc	251	26	.	.	PUNCT
cord-002994-1zjrunzc	252	1	in	in	ADP
cord-002994-1zjrunzc	252	2	a	a	DET
cord-002994-1zjrunzc	252	3	possible	possible	ADJ
cord-002994-1zjrunzc	252	4	host	host	NOUN
cord-002994-1zjrunzc	252	5	-	-	PUNCT
cord-002994-1zjrunzc	252	6	switching	switch	VERB
cord-002994-1zjrunzc	252	7	event	event	NOUN
cord-002994-1zjrunzc	252	8	[	[	X
cord-002994-1zjrunzc	252	9	45	45	NUM
cord-002994-1zjrunzc	252	10	]	]	PUNCT
cord-002994-1zjrunzc	252	11	,	,	PUNCT
cord-002994-1zjrunzc	252	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	252	13	could	could	AUX
cord-002994-1zjrunzc	252	14	acquire	acquire	VERB
cord-002994-1zjrunzc	252	15	future	future	ADJ
cord-002994-1zjrunzc	252	16	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	252	17	to	to	ADP
cord-002994-1zjrunzc	252	18	other	other	ADJ
cord-002994-1zjrunzc	252	19	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	252	20	such	such	ADJ
cord-002994-1zjrunzc	252	21	as	as	ADP
cord-002994-1zjrunzc	252	22	humans	human	NOUN
cord-002994-1zjrunzc	252	23	[	[	PUNCT
cord-002994-1zjrunzc	252	24	46	46	NUM
cord-002994-1zjrunzc	252	25	]	]	PUNCT
cord-002994-1zjrunzc	252	26	.	.	PUNCT
cord-002994-1zjrunzc	253	1	in	in	ADP
cord-002994-1zjrunzc	253	2	this	this	DET
cord-002994-1zjrunzc	253	3	study	study	NOUN
cord-002994-1zjrunzc	253	4	,	,	PUNCT
cord-002994-1zjrunzc	253	5	genetic	genetic	ADJ
cord-002994-1zjrunzc	253	6	properties	property	NOUN
cord-002994-1zjrunzc	253	7	of	of	ADP
cord-002994-1zjrunzc	253	8	bagv	bagv	NOUN
cord-002994-1zjrunzc	253	9	isolates	isolate	VERB
cord-002994-1zjrunzc	253	10	circulating	circulate	VERB
cord-002994-1zjrunzc	253	11	in	in	ADP
cord-002994-1zjrunzc	253	12	west	west	PROPN
cord-002994-1zjrunzc	253	13	africa	africa	PROPN
cord-002994-1zjrunzc	253	14	,	,	PUNCT
cord-002994-1zjrunzc	253	15	the	the	DET
cord-002994-1zjrunzc	253	16	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	253	17	phylogeny	phylogeny	NOUN
cord-002994-1zjrunzc	253	18	of	of	ADP
cord-002994-1zjrunzc	253	19	bagv	bagv	NOUN
cord-002994-1zjrunzc	253	20	and	and	CCONJ
cord-002994-1zjrunzc	253	21	evidence	evidence	NOUN
cord-002994-1zjrunzc	253	22	of	of	ADP
cord-002994-1zjrunzc	253	23	bagv	bagv	PROPN
cord-002994-1zjrunzc	253	24	adaptation	adaptation	PROPN
cord-002994-1zjrunzc	253	25	to	to	ADP
cord-002994-1zjrunzc	253	26	human	human	PROPN
cord-002994-1zjrunzc	253	27	house	house	NOUN
cord-002994-1zjrunzc	253	28	-	-	PUNCT
cord-002994-1zjrunzc	253	29	keeping	keep	VERB
cord-002994-1zjrunzc	253	30	genes	gene	NOUN
cord-002994-1zjrunzc	253	31	were	be	AUX
cord-002994-1zjrunzc	253	32	evaluated	evaluate	VERB
cord-002994-1zjrunzc	253	33	in	in	ADP
cord-002994-1zjrunzc	253	34	comparison	comparison	NOUN
cord-002994-1zjrunzc	253	35	with	with	ADP
cord-002994-1zjrunzc	253	36	different	different	ADJ
cord-002994-1zjrunzc	253	37	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	253	38	groups	group	NOUN
cord-002994-1zjrunzc	253	39	.	.	PUNCT
cord-002994-1zjrunzc	254	1	genomes	genome	NOUN
cord-002994-1zjrunzc	254	2	of	of	ADP
cord-002994-1zjrunzc	254	3	11	11	NUM
cord-002994-1zjrunzc	254	4	west	west	PROPN
cord-002994-1zjrunzc	254	5	african	african	ADJ
cord-002994-1zjrunzc	254	6	bagv	bagv	PROPN
cord-002994-1zjrunzc	254	7	strains	strain	VERB
cord-002994-1zjrunzc	254	8	isolated	isolate	VERB
cord-002994-1zjrunzc	254	9	from	from	ADP
cord-002994-1zjrunzc	254	10	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	254	11	pools	pool	NOUN
cord-002994-1zjrunzc	254	12	collected	collect	VERB
cord-002994-1zjrunzc	254	13	in	in	ADP
cord-002994-1zjrunzc	254	14	the	the	DET
cord-002994-1zjrunzc	254	15	field	field	NOUN
cord-002994-1zjrunzc	254	16	from	from	ADP
cord-002994-1zjrunzc	254	17	1988	1988	NUM
cord-002994-1zjrunzc	254	18	to	to	ADP
cord-002994-1zjrunzc	254	19	2014	2014	NUM
cord-002994-1zjrunzc	254	20	showed	show	VERB
cord-002994-1zjrunzc	254	21	similarities	similarity	NOUN
cord-002994-1zjrunzc	254	22	in	in	ADP
cord-002994-1zjrunzc	254	23	terms	term	NOUN
cord-002994-1zjrunzc	254	24	of	of	ADP
cord-002994-1zjrunzc	254	25	gene	gene	NOUN
cord-002994-1zjrunzc	254	26	lengths	length	NOUN
cord-002994-1zjrunzc	254	27	when	when	SCONJ
cord-002994-1zjrunzc	254	28	compared	compare	VERB
cord-002994-1zjrunzc	254	29	with	with	ADP
cord-002994-1zjrunzc	254	30	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	254	31	sequences	sequence	NOUN
cord-002994-1zjrunzc	254	32	of	of	ADP
cord-002994-1zjrunzc	254	33	previously	previously	ADV
cord-002994-1zjrunzc	254	34	available	available	ADJ
cord-002994-1zjrunzc	254	35	isolates	isolate	NOUN
cord-002994-1zjrunzc	254	36	from	from	ADP
cord-002994-1zjrunzc	254	37	car	car	NOUN
cord-002994-1zjrunzc	254	38	and	and	CCONJ
cord-002994-1zjrunzc	254	39	spain	spain	PROPN
cord-002994-1zjrunzc	254	40	.	.	PUNCT
cord-002994-1zjrunzc	255	1	low	low	ADJ
cord-002994-1zjrunzc	255	2	amino	amino	NOUN
cord-002994-1zjrunzc	255	3	acid	acid	NOUN
cord-002994-1zjrunzc	255	4	distances	distance	NOUN
cord-002994-1zjrunzc	255	5	observed	observe	VERB
cord-002994-1zjrunzc	255	6	between	between	ADP
cord-002994-1zjrunzc	255	7	west	west	ADJ
cord-002994-1zjrunzc	255	8	african	african	ADJ
cord-002994-1zjrunzc	255	9	isolates	isolate	NOUN
cord-002994-1zjrunzc	255	10	(	(	PUNCT
cord-002994-1zjrunzc	255	11	<	<	X
cord-002994-1zjrunzc	255	12	2	2	NUM
cord-002994-1zjrunzc	255	13	%	%	NOUN
cord-002994-1zjrunzc	255	14	)	)	PUNCT
cord-002994-1zjrunzc	255	15	in	in	ADP
cord-002994-1zjrunzc	255	16	comparison	comparison	NOUN
cord-002994-1zjrunzc	255	17	with	with	ADP
cord-002994-1zjrunzc	255	18	previously	previously	ADV
cord-002994-1zjrunzc	255	19	non	non	ADJ
cord-002994-1zjrunzc	255	20	-	-	ADJ
cord-002994-1zjrunzc	255	21	west	west	ADJ
cord-002994-1zjrunzc	255	22	african	african	ADJ
cord-002994-1zjrunzc	255	23	sequences	sequence	NOUN
cord-002994-1zjrunzc	255	24	(	(	PUNCT
cord-002994-1zjrunzc	255	25	<3	<3	X
cord-002994-1zjrunzc	255	26	%	%	INTJ
cord-002994-1zjrunzc	255	27	)	)	PUNCT
cord-002994-1zjrunzc	255	28	combined	combine	VERB
cord-002994-1zjrunzc	255	29	with	with	ADP
cord-002994-1zjrunzc	255	30	the	the	DET
cord-002994-1zjrunzc	255	31	weak	weak	ADJ
cord-002994-1zjrunzc	255	32	coefficient	coefficient	NOUN
cord-002994-1zjrunzc	255	33	of	of	ADP
cord-002994-1zjrunzc	255	34	differentiation	differentiation	NOUN
cord-002994-1zjrunzc	255	35	(	(	PUNCT
cord-002994-1zjrunzc	255	36	<	<	X
cord-002994-1zjrunzc	255	37	0.2	0.2	NUM
cord-002994-1zjrunzc	255	38	)	)	PUNCT
cord-002994-1zjrunzc	255	39	revealed	reveal	VERB
cord-002994-1zjrunzc	255	40	evidence	evidence	NOUN
cord-002994-1zjrunzc	255	41	of	of	ADP
cord-002994-1zjrunzc	255	42	a	a	DET
cord-002994-1zjrunzc	255	43	low	low	ADJ
cord-002994-1zjrunzc	255	44	genetic	genetic	ADJ
cord-002994-1zjrunzc	255	45	diversity	diversity	NOUN
cord-002994-1zjrunzc	255	46	of	of	ADP
cord-002994-1zjrunzc	255	47	bagv	bagv	PROPN
cord-002994-1zjrunzc	255	48	sequences	sequence	NOUN
cord-002994-1zjrunzc	255	49	analyzed	analyze	VERB
cord-002994-1zjrunzc	255	50	in	in	ADP
cord-002994-1zjrunzc	255	51	this	this	DET
cord-002994-1zjrunzc	255	52	study	study	NOUN
cord-002994-1zjrunzc	255	53	as	as	SCONJ
cord-002994-1zjrunzc	255	54	previously	previously	ADV
cord-002994-1zjrunzc	255	55	described	describe	VERB
cord-002994-1zjrunzc	255	56	[	[	SYM
cord-002994-1zjrunzc	255	57	9	9	NUM
cord-002994-1zjrunzc	255	58	]	]	PUNCT
cord-002994-1zjrunzc	255	59	.	.	PUNCT
cord-002994-1zjrunzc	256	1	in	in	ADP
cord-002994-1zjrunzc	256	2	addition	addition	NOUN
cord-002994-1zjrunzc	256	3	,	,	PUNCT
cord-002994-1zjrunzc	256	4	the	the	DET
cord-002994-1zjrunzc	256	5	west	west	PROPN
cord-002994-1zjrunzc	256	6	african	african	PROPN
cord-002994-1zjrunzc	256	7	bagv	bagv	PROPN
cord-002994-1zjrunzc	256	8	isolates	isolate	VERB
cord-002994-1zjrunzc	256	9	were	be	AUX
cord-002994-1zjrunzc	256	10	more	more	ADV
cord-002994-1zjrunzc	256	11	closely	closely	ADV
cord-002994-1zjrunzc	256	12	related	related	ADJ
cord-002994-1zjrunzc	256	13	to	to	ADP
cord-002994-1zjrunzc	256	14	the	the	DET
cord-002994-1zjrunzc	256	15	car	car	NOUN
cord-002994-1zjrunzc	256	16	isolate	isolate	VERB
cord-002994-1zjrunzc	256	17	.	.	PUNCT
cord-002994-1zjrunzc	257	1	genome	genome	NOUN
cord-002994-1zjrunzc	257	2	sequences	sequence	NOUN
cord-002994-1zjrunzc	257	3	originating	originate	VERB
cord-002994-1zjrunzc	257	4	from	from	ADP
cord-002994-1zjrunzc	257	5	bagv	bagv	NOUN
cord-002994-1zjrunzc	257	6	isolates	isolate	NOUN
cord-002994-1zjrunzc	257	7	from	from	ADP
cord-002994-1zjrunzc	257	8	other	other	ADJ
cord-002994-1zjrunzc	257	9	geographic	geographic	ADJ
cord-002994-1zjrunzc	257	10	locations	location	NOUN
cord-002994-1zjrunzc	257	11	would	would	AUX
cord-002994-1zjrunzc	257	12	be	be	AUX
cord-002994-1zjrunzc	257	13	helpful	helpful	ADJ
cord-002994-1zjrunzc	257	14	to	to	PART
cord-002994-1zjrunzc	257	15	understand	understand	VERB
cord-002994-1zjrunzc	257	16	if	if	SCONJ
cord-002994-1zjrunzc	257	17	this	this	DET
cord-002994-1zjrunzc	257	18	low	low	ADJ
cord-002994-1zjrunzc	257	19	diversity	diversity	NOUN
cord-002994-1zjrunzc	257	20	is	be	AUX
cord-002994-1zjrunzc	257	21	secluded	seclude	VERB
cord-002994-1zjrunzc	257	22	to	to	ADP
cord-002994-1zjrunzc	257	23	west	west	PROPN
cord-002994-1zjrunzc	257	24	-	-	PUNCT
cord-002994-1zjrunzc	257	25	africa	africa	PROPN
cord-002994-1zjrunzc	257	26	.	.	PUNCT
cord-002994-1zjrunzc	258	1	although	although	SCONJ
cord-002994-1zjrunzc	258	2	the	the	DET
cord-002994-1zjrunzc	258	3	5′	5′	NUM
cord-002994-1zjrunzc	258	4	utr	utr	NOUN
cord-002994-1zjrunzc	258	5	was	be	AUX
cord-002994-1zjrunzc	258	6	conserved	conserve	VERB
cord-002994-1zjrunzc	258	7	between	between	ADP
cord-002994-1zjrunzc	258	8	isolates	isolate	NOUN
cord-002994-1zjrunzc	258	9	,	,	PUNCT
cord-002994-1zjrunzc	258	10	the	the	DET
cord-002994-1zjrunzc	258	11	3′	3′	NUM
cord-002994-1zjrunzc	258	12	utr	utr	NOUN
cord-002994-1zjrunzc	258	13	of	of	ADP
cord-002994-1zjrunzc	258	14	west	west	ADJ
cord-002994-1zjrunzc	258	15	african	african	ADJ
cord-002994-1zjrunzc	258	16	isolates	isolate	VERB
cord-002994-1zjrunzc	258	17	varied	varied	ADJ
cord-002994-1zjrunzc	258	18	in	in	ADP
cord-002994-1zjrunzc	258	19	terms	term	NOUN
cord-002994-1zjrunzc	258	20	of	of	ADP
cord-002994-1zjrunzc	258	21	length	length	NOUN
cord-002994-1zjrunzc	258	22	and	and	CCONJ
cord-002994-1zjrunzc	258	23	structure	structure	NOUN
cord-002994-1zjrunzc	258	24	.	.	PUNCT
cord-002994-1zjrunzc	259	1	as	as	ADP
cord-002994-1zjrunzc	259	2	in	in	ADP
cord-002994-1zjrunzc	259	3	other	other	ADJ
cord-002994-1zjrunzc	259	4	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	259	5	-	-	PUNCT
cord-002994-1zjrunzc	259	6	borne	bear	VERB
cord-002994-1zjrunzc	259	7	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	259	8	genomes	genome	NOUN
cord-002994-1zjrunzc	259	9	,	,	PUNCT
cord-002994-1zjrunzc	259	10	bagv	bagv	PROPN
cord-002994-1zjrunzc	259	11	genome	genome	PROPN
cord-002994-1zjrunzc	259	12	harbored	harbored	PROPN
cord-002994-1zjrunzc	259	13	structural	structural	PROPN
cord-002994-1zjrunzc	259	14	rna	rna	PROPN
cord-002994-1zjrunzc	259	15	domains	domain	NOUN
cord-002994-1zjrunzc	259	16	both	both	PRON
cord-002994-1zjrunzc	259	17	in	in	ADP
cord-002994-1zjrunzc	259	18	5′	5′	NUM
cord-002994-1zjrunzc	259	19	and	and	CCONJ
cord-002994-1zjrunzc	259	20	3′	3′	NUM
cord-002994-1zjrunzc	259	21	utrs	utrs	PROPN
cord-002994-1zjrunzc	259	22	which	which	PRON
cord-002994-1zjrunzc	259	23	play	play	VERB
cord-002994-1zjrunzc	259	24	a	a	DET
cord-002994-1zjrunzc	259	25	major	major	ADJ
cord-002994-1zjrunzc	259	26	role	role	NOUN
cord-002994-1zjrunzc	259	27	in	in	ADP
cord-002994-1zjrunzc	259	28	flaviviral	flaviviral	ADJ
cord-002994-1zjrunzc	259	29	replication	replication	NOUN
cord-002994-1zjrunzc	259	30	and	and	CCONJ
cord-002994-1zjrunzc	259	31	interactions	interaction	NOUN
cord-002994-1zjrunzc	259	32	with	with	ADP
cord-002994-1zjrunzc	259	33	host	host	NOUN
cord-002994-1zjrunzc	259	34	proteins	protein	NOUN
cord-002994-1zjrunzc	259	35	and	and	CCONJ
cord-002994-1zjrunzc	259	36	regulate	regulate	VERB
cord-002994-1zjrunzc	259	37	cellular	cellular	ADJ
cord-002994-1zjrunzc	259	38	response	response	NOUN
cord-002994-1zjrunzc	259	39	to	to	ADP
cord-002994-1zjrunzc	259	40	infection	infection	NOUN
cord-002994-1zjrunzc	259	41	[	[	PUNCT
cord-002994-1zjrunzc	259	42	47	47	NUM
cord-002994-1zjrunzc	259	43	,	,	PUNCT
cord-002994-1zjrunzc	259	44	48	48	NUM
cord-002994-1zjrunzc	259	45	]	]	PUNCT
cord-002994-1zjrunzc	259	46	.	.	PUNCT
cord-002994-1zjrunzc	260	1	with	with	ADP
cord-002994-1zjrunzc	260	2	an	an	DET
cord-002994-1zjrunzc	260	3	increasing	increase	VERB
cord-002994-1zjrunzc	260	4	number	number	NOUN
cord-002994-1zjrunzc	260	5	of	of	ADP
cord-002994-1zjrunzc	260	6	emergent	emergent	NOUN
cord-002994-1zjrunzc	260	7	and	and	CCONJ
cord-002994-1zjrunzc	260	8	re	re	ADJ
cord-002994-1zjrunzc	260	9	-	-	ADJ
cord-002994-1zjrunzc	260	10	emergent	emergent	ADJ
cord-002994-1zjrunzc	260	11	pathogens	pathogen	NOUN
cord-002994-1zjrunzc	260	12	involved	involve	VERB
cord-002994-1zjrunzc	260	13	in	in	ADP
cord-002994-1zjrunzc	260	14	human	human	ADJ
cord-002994-1zjrunzc	260	15	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	260	16	,	,	PUNCT
cord-002994-1zjrunzc	260	17	it	it	PRON
cord-002994-1zjrunzc	260	18	is	be	AUX
cord-002994-1zjrunzc	260	19	important	important	ADJ
cord-002994-1zjrunzc	260	20	to	to	PART
cord-002994-1zjrunzc	260	21	try	try	VERB
cord-002994-1zjrunzc	260	22	to	to	PART
cord-002994-1zjrunzc	260	23	better	well	ADV
cord-002994-1zjrunzc	260	24	understand	understand	VERB
cord-002994-1zjrunzc	260	25	which	which	PRON
cord-002994-1zjrunzc	260	26	viruses	virus	NOUN
cord-002994-1zjrunzc	260	27	have	have	VERB
cord-002994-1zjrunzc	260	28	a	a	DET
cord-002994-1zjrunzc	260	29	potential	potential	NOUN
cord-002994-1zjrunzc	260	30	to	to	PART
cord-002994-1zjrunzc	260	31	emerge	emerge	VERB
cord-002994-1zjrunzc	260	32	causing	cause	VERB
cord-002994-1zjrunzc	260	33	human	human	ADJ
cord-002994-1zjrunzc	260	34	infection	infection	NOUN
cord-002994-1zjrunzc	260	35	in	in	ADP
cord-002994-1zjrunzc	260	36	the	the	DET
cord-002994-1zjrunzc	260	37	future	future	NOUN
cord-002994-1zjrunzc	260	38	.	.	PUNCT
cord-002994-1zjrunzc	261	1	since	since	SCONJ
cord-002994-1zjrunzc	261	2	its	its	PRON
cord-002994-1zjrunzc	261	3	first	first	ADJ
cord-002994-1zjrunzc	261	4	isolation	isolation	NOUN
cord-002994-1zjrunzc	261	5	,	,	PUNCT
cord-002994-1zjrunzc	261	6	bagv	bagv	PROPN
cord-002994-1zjrunzc	261	7	was	be	AUX
cord-002994-1zjrunzc	261	8	only	only	ADV
cord-002994-1zjrunzc	261	9	detected	detect	VERB
cord-002994-1zjrunzc	261	10	in	in	ADP
cord-002994-1zjrunzc	261	11	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	261	12	pools	pool	NOUN
cord-002994-1zjrunzc	261	13	collected	collect	VERB
cord-002994-1zjrunzc	261	14	in	in	ADP
cord-002994-1zjrunzc	261	15	the	the	DET
cord-002994-1zjrunzc	261	16	field	field	NOUN
cord-002994-1zjrunzc	261	17	during	during	ADP
cord-002994-1zjrunzc	261	18	entomological	entomological	ADJ
cord-002994-1zjrunzc	261	19	investigations	investigation	NOUN
cord-002994-1zjrunzc	261	20	in	in	ADP
cord-002994-1zjrunzc	261	21	west	west	PROPN
cord-002994-1zjrunzc	261	22	and	and	CCONJ
cord-002994-1zjrunzc	261	23	central	central	PROPN
cord-002994-1zjrunzc	261	24	africa	africa	PROPN
cord-002994-1zjrunzc	261	25	and	and	CCONJ
cord-002994-1zjrunzc	261	26	in	in	ADP
cord-002994-1zjrunzc	261	27	india	india	PROPN
cord-002994-1zjrunzc	262	1	[	[	PUNCT
cord-002994-1zjrunzc	262	2	12	12	NUM
cord-002994-1zjrunzc	262	3	]	]	PUNCT
cord-002994-1zjrunzc	262	4	.	.	PUNCT
cord-002994-1zjrunzc	263	1	however	however	ADV
cord-002994-1zjrunzc	263	2	,	,	PUNCT
cord-002994-1zjrunzc	263	3	in	in	ADP
cord-002994-1zjrunzc	263	4	2010	2010	NUM
cord-002994-1zjrunzc	263	5	,	,	PUNCT
cord-002994-1zjrunzc	263	6	bagv	bagv	PROPN
cord-002994-1zjrunzc	263	7	was	be	AUX
cord-002994-1zjrunzc	263	8	identified	identify	VERB
cord-002994-1zjrunzc	263	9	as	as	ADP
cord-002994-1zjrunzc	263	10	the	the	DET
cord-002994-1zjrunzc	263	11	cause	cause	NOUN
cord-002994-1zjrunzc	263	12	of	of	ADP
cord-002994-1zjrunzc	263	13	an	an	DET
cord-002994-1zjrunzc	263	14	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	263	15	outbreak	outbreak	NOUN
cord-002994-1zjrunzc	263	16	in	in	ADP
cord-002994-1zjrunzc	263	17	wild	wild	ADJ
cord-002994-1zjrunzc	263	18	birds	bird	NOUN
cord-002994-1zjrunzc	263	19	circulating	circulate	VERB
cord-002994-1zjrunzc	263	20	in	in	ADP
cord-002994-1zjrunzc	263	21	southern	southern	ADJ
cord-002994-1zjrunzc	263	22	spain	spain	PROPN
cord-002994-1zjrunzc	263	23	[	[	PUNCT
cord-002994-1zjrunzc	263	24	9	9	NUM
cord-002994-1zjrunzc	263	25	]	]	PUNCT
cord-002994-1zjrunzc	263	26	.	.	PUNCT
cord-002994-1zjrunzc	264	1	in	in	ADP
cord-002994-1zjrunzc	264	2	a	a	DET
cord-002994-1zjrunzc	264	3	possible	possible	ADJ
cord-002994-1zjrunzc	264	4	host	host	NOUN
cord-002994-1zjrunzc	264	5	-	-	PUNCT
cord-002994-1zjrunzc	264	6	switching	switch	VERB
cord-002994-1zjrunzc	264	7	event	event	NOUN
cord-002994-1zjrunzc	264	8	[	[	X
cord-002994-1zjrunzc	264	9	45	45	NUM
cord-002994-1zjrunzc	264	10	]	]	PUNCT
cord-002994-1zjrunzc	264	11	,	,	PUNCT
cord-002994-1zjrunzc	264	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	264	13	could	could	AUX
cord-002994-1zjrunzc	264	14	acquire	acquire	VERB
cord-002994-1zjrunzc	264	15	future	future	ADJ
cord-002994-1zjrunzc	264	16	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	264	17	to	to	ADP
cord-002994-1zjrunzc	264	18	other	other	ADJ
cord-002994-1zjrunzc	264	19	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	264	20	such	such	ADJ
cord-002994-1zjrunzc	264	21	as	as	ADP
cord-002994-1zjrunzc	264	22	humans	human	NOUN
cord-002994-1zjrunzc	264	23	[	[	PUNCT
cord-002994-1zjrunzc	264	24	46	46	NUM
cord-002994-1zjrunzc	264	25	]	]	PUNCT
cord-002994-1zjrunzc	264	26	.	.	PUNCT
cord-002994-1zjrunzc	265	1	in	in	ADP
cord-002994-1zjrunzc	265	2	this	this	DET
cord-002994-1zjrunzc	265	3	study	study	NOUN
cord-002994-1zjrunzc	265	4	,	,	PUNCT
cord-002994-1zjrunzc	265	5	genetic	genetic	ADJ
cord-002994-1zjrunzc	265	6	properties	property	NOUN
cord-002994-1zjrunzc	265	7	of	of	ADP
cord-002994-1zjrunzc	265	8	bagv	bagv	NOUN
cord-002994-1zjrunzc	265	9	isolates	isolate	VERB
cord-002994-1zjrunzc	265	10	circulating	circulate	VERB
cord-002994-1zjrunzc	265	11	in	in	ADP
cord-002994-1zjrunzc	265	12	west	west	PROPN
cord-002994-1zjrunzc	265	13	africa	africa	PROPN
cord-002994-1zjrunzc	265	14	,	,	PUNCT
cord-002994-1zjrunzc	265	15	the	the	DET
cord-002994-1zjrunzc	265	16	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	265	17	phylogeny	phylogeny	NOUN
cord-002994-1zjrunzc	265	18	of	of	ADP
cord-002994-1zjrunzc	265	19	bagv	bagv	NOUN
cord-002994-1zjrunzc	265	20	and	and	CCONJ
cord-002994-1zjrunzc	265	21	evidence	evidence	NOUN
cord-002994-1zjrunzc	265	22	of	of	ADP
cord-002994-1zjrunzc	265	23	bagv	bagv	PROPN
cord-002994-1zjrunzc	265	24	adaptation	adaptation	PROPN
cord-002994-1zjrunzc	265	25	to	to	ADP
cord-002994-1zjrunzc	265	26	human	human	PROPN
cord-002994-1zjrunzc	265	27	house	house	NOUN
cord-002994-1zjrunzc	265	28	-	-	PUNCT
cord-002994-1zjrunzc	265	29	keeping	keep	VERB
cord-002994-1zjrunzc	265	30	genes	gene	NOUN
cord-002994-1zjrunzc	265	31	were	be	AUX
cord-002994-1zjrunzc	265	32	evaluated	evaluate	VERB
cord-002994-1zjrunzc	265	33	in	in	ADP
cord-002994-1zjrunzc	265	34	comparison	comparison	NOUN
cord-002994-1zjrunzc	265	35	with	with	ADP
cord-002994-1zjrunzc	265	36	different	different	ADJ
cord-002994-1zjrunzc	265	37	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	265	38	groups	group	NOUN
cord-002994-1zjrunzc	265	39	.	.	PUNCT
cord-002994-1zjrunzc	266	1	genomes	genome	NOUN
cord-002994-1zjrunzc	266	2	of	of	ADP
cord-002994-1zjrunzc	266	3	11	11	NUM
cord-002994-1zjrunzc	266	4	west	west	PROPN
cord-002994-1zjrunzc	266	5	african	african	ADJ
cord-002994-1zjrunzc	266	6	bagv	bagv	PROPN
cord-002994-1zjrunzc	266	7	strains	strain	VERB
cord-002994-1zjrunzc	266	8	isolated	isolate	VERB
cord-002994-1zjrunzc	266	9	from	from	ADP
cord-002994-1zjrunzc	266	10	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	266	11	pools	pool	NOUN
cord-002994-1zjrunzc	266	12	collected	collect	VERB
cord-002994-1zjrunzc	266	13	in	in	ADP
cord-002994-1zjrunzc	266	14	the	the	DET
cord-002994-1zjrunzc	266	15	field	field	NOUN
cord-002994-1zjrunzc	266	16	from	from	ADP
cord-002994-1zjrunzc	266	17	1988	1988	NUM
cord-002994-1zjrunzc	266	18	to	to	ADP
cord-002994-1zjrunzc	266	19	2014	2014	NUM
cord-002994-1zjrunzc	266	20	showed	show	VERB
cord-002994-1zjrunzc	266	21	similarities	similarity	NOUN
cord-002994-1zjrunzc	266	22	in	in	ADP
cord-002994-1zjrunzc	266	23	terms	term	NOUN
cord-002994-1zjrunzc	266	24	of	of	ADP
cord-002994-1zjrunzc	266	25	gene	gene	NOUN
cord-002994-1zjrunzc	266	26	lengths	length	NOUN
cord-002994-1zjrunzc	266	27	when	when	SCONJ
cord-002994-1zjrunzc	266	28	compared	compare	VERB
cord-002994-1zjrunzc	266	29	with	with	ADP
cord-002994-1zjrunzc	266	30	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	266	31	sequences	sequence	NOUN
cord-002994-1zjrunzc	266	32	of	of	ADP
cord-002994-1zjrunzc	266	33	previously	previously	ADV
cord-002994-1zjrunzc	266	34	available	available	ADJ
cord-002994-1zjrunzc	266	35	isolates	isolate	NOUN
cord-002994-1zjrunzc	266	36	from	from	ADP
cord-002994-1zjrunzc	266	37	car	car	NOUN
cord-002994-1zjrunzc	266	38	and	and	CCONJ
cord-002994-1zjrunzc	266	39	spain	spain	PROPN
cord-002994-1zjrunzc	266	40	.	.	PUNCT
cord-002994-1zjrunzc	267	1	low	low	ADJ
cord-002994-1zjrunzc	267	2	amino	amino	NOUN
cord-002994-1zjrunzc	267	3	acid	acid	NOUN
cord-002994-1zjrunzc	267	4	distances	distance	NOUN
cord-002994-1zjrunzc	267	5	observed	observe	VERB
cord-002994-1zjrunzc	267	6	between	between	ADP
cord-002994-1zjrunzc	267	7	west	west	ADJ
cord-002994-1zjrunzc	267	8	african	african	ADJ
cord-002994-1zjrunzc	267	9	isolates	isolate	NOUN
cord-002994-1zjrunzc	267	10	(	(	PUNCT
cord-002994-1zjrunzc	267	11	<	<	X
cord-002994-1zjrunzc	267	12	2	2	NUM
cord-002994-1zjrunzc	267	13	%	%	NOUN
cord-002994-1zjrunzc	267	14	)	)	PUNCT
cord-002994-1zjrunzc	267	15	in	in	ADP
cord-002994-1zjrunzc	267	16	comparison	comparison	NOUN
cord-002994-1zjrunzc	267	17	with	with	ADP
cord-002994-1zjrunzc	267	18	previously	previously	ADV
cord-002994-1zjrunzc	267	19	non	non	ADJ
cord-002994-1zjrunzc	267	20	-	-	ADJ
cord-002994-1zjrunzc	267	21	west	west	ADJ
cord-002994-1zjrunzc	267	22	african	african	ADJ
cord-002994-1zjrunzc	267	23	sequences	sequence	NOUN
cord-002994-1zjrunzc	267	24	(	(	PUNCT
cord-002994-1zjrunzc	267	25	<3	<3	X
cord-002994-1zjrunzc	267	26	%	%	INTJ
cord-002994-1zjrunzc	267	27	)	)	PUNCT
cord-002994-1zjrunzc	267	28	combined	combine	VERB
cord-002994-1zjrunzc	267	29	with	with	ADP
cord-002994-1zjrunzc	267	30	the	the	DET
cord-002994-1zjrunzc	267	31	weak	weak	ADJ
cord-002994-1zjrunzc	267	32	coefficient	coefficient	NOUN
cord-002994-1zjrunzc	267	33	of	of	ADP
cord-002994-1zjrunzc	267	34	differentiation	differentiation	NOUN
cord-002994-1zjrunzc	267	35	(	(	PUNCT
cord-002994-1zjrunzc	267	36	<	<	X
cord-002994-1zjrunzc	267	37	0.2	0.2	NUM
cord-002994-1zjrunzc	267	38	)	)	PUNCT
cord-002994-1zjrunzc	267	39	revealed	reveal	VERB
cord-002994-1zjrunzc	267	40	evidence	evidence	NOUN
cord-002994-1zjrunzc	267	41	of	of	ADP
cord-002994-1zjrunzc	267	42	a	a	DET
cord-002994-1zjrunzc	267	43	low	low	ADJ
cord-002994-1zjrunzc	267	44	genetic	genetic	ADJ
cord-002994-1zjrunzc	267	45	diversity	diversity	NOUN
cord-002994-1zjrunzc	267	46	of	of	ADP
cord-002994-1zjrunzc	267	47	bagv	bagv	PROPN
cord-002994-1zjrunzc	267	48	sequences	sequence	NOUN
cord-002994-1zjrunzc	267	49	analyzed	analyze	VERB
cord-002994-1zjrunzc	267	50	in	in	ADP
cord-002994-1zjrunzc	267	51	this	this	DET
cord-002994-1zjrunzc	267	52	study	study	NOUN
cord-002994-1zjrunzc	267	53	as	as	SCONJ
cord-002994-1zjrunzc	267	54	previously	previously	ADV
cord-002994-1zjrunzc	267	55	described	describe	VERB
cord-002994-1zjrunzc	267	56	[	[	SYM
cord-002994-1zjrunzc	267	57	9	9	NUM
cord-002994-1zjrunzc	267	58	]	]	PUNCT
cord-002994-1zjrunzc	267	59	.	.	PUNCT
cord-002994-1zjrunzc	268	1	in	in	ADP
cord-002994-1zjrunzc	268	2	addition	addition	NOUN
cord-002994-1zjrunzc	268	3	,	,	PUNCT
cord-002994-1zjrunzc	268	4	the	the	DET
cord-002994-1zjrunzc	268	5	west	west	PROPN
cord-002994-1zjrunzc	268	6	african	african	PROPN
cord-002994-1zjrunzc	268	7	bagv	bagv	PROPN
cord-002994-1zjrunzc	268	8	isolates	isolate	VERB
cord-002994-1zjrunzc	268	9	were	be	AUX
cord-002994-1zjrunzc	268	10	more	more	ADV
cord-002994-1zjrunzc	268	11	closely	closely	ADV
cord-002994-1zjrunzc	268	12	related	related	ADJ
cord-002994-1zjrunzc	268	13	to	to	ADP
cord-002994-1zjrunzc	268	14	the	the	DET
cord-002994-1zjrunzc	268	15	car	car	NOUN
cord-002994-1zjrunzc	268	16	isolate	isolate	VERB
cord-002994-1zjrunzc	268	17	.	.	PUNCT
cord-002994-1zjrunzc	269	1	genome	genome	NOUN
cord-002994-1zjrunzc	269	2	sequences	sequence	NOUN
cord-002994-1zjrunzc	269	3	originating	originate	VERB
cord-002994-1zjrunzc	269	4	from	from	ADP
cord-002994-1zjrunzc	269	5	bagv	bagv	NOUN
cord-002994-1zjrunzc	269	6	isolates	isolate	NOUN
cord-002994-1zjrunzc	269	7	from	from	ADP
cord-002994-1zjrunzc	269	8	other	other	ADJ
cord-002994-1zjrunzc	269	9	geographic	geographic	ADJ
cord-002994-1zjrunzc	269	10	locations	location	NOUN
cord-002994-1zjrunzc	269	11	would	would	AUX
cord-002994-1zjrunzc	269	12	be	be	AUX
cord-002994-1zjrunzc	269	13	helpful	helpful	ADJ
cord-002994-1zjrunzc	269	14	to	to	PART
cord-002994-1zjrunzc	269	15	understand	understand	VERB
cord-002994-1zjrunzc	269	16	if	if	SCONJ
cord-002994-1zjrunzc	269	17	this	this	DET
cord-002994-1zjrunzc	269	18	low	low	ADJ
cord-002994-1zjrunzc	269	19	diversity	diversity	NOUN
cord-002994-1zjrunzc	269	20	is	be	AUX
cord-002994-1zjrunzc	269	21	secluded	seclude	VERB
cord-002994-1zjrunzc	269	22	to	to	ADP
cord-002994-1zjrunzc	269	23	west	west	PROPN
cord-002994-1zjrunzc	269	24	-	-	PUNCT
cord-002994-1zjrunzc	269	25	africa	africa	PROPN
cord-002994-1zjrunzc	269	26	.	.	PUNCT
cord-002994-1zjrunzc	270	1	although	although	SCONJ
cord-002994-1zjrunzc	270	2	the	the	DET
cord-002994-1zjrunzc	270	3	5	5	NUM
cord-002994-1zjrunzc	270	4	utr	utr	NOUN
cord-002994-1zjrunzc	270	5	was	be	AUX
cord-002994-1zjrunzc	270	6	conserved	conserve	VERB
cord-002994-1zjrunzc	270	7	between	between	ADP
cord-002994-1zjrunzc	270	8	isolates	isolate	NOUN
cord-002994-1zjrunzc	270	9	,	,	PUNCT
cord-002994-1zjrunzc	270	10	the	the	DET
cord-002994-1zjrunzc	270	11	3	3	NUM
cord-002994-1zjrunzc	270	12	utr	utr	NOUN
cord-002994-1zjrunzc	270	13	of	of	ADP
cord-002994-1zjrunzc	270	14	west	west	ADJ
cord-002994-1zjrunzc	270	15	african	african	ADJ
cord-002994-1zjrunzc	270	16	isolates	isolate	VERB
cord-002994-1zjrunzc	270	17	varied	varied	ADJ
cord-002994-1zjrunzc	270	18	in	in	ADP
cord-002994-1zjrunzc	270	19	terms	term	NOUN
cord-002994-1zjrunzc	270	20	of	of	ADP
cord-002994-1zjrunzc	270	21	length	length	NOUN
cord-002994-1zjrunzc	270	22	and	and	CCONJ
cord-002994-1zjrunzc	270	23	structure	structure	NOUN
cord-002994-1zjrunzc	270	24	.	.	PUNCT
cord-002994-1zjrunzc	271	1	as	as	ADP
cord-002994-1zjrunzc	271	2	in	in	ADP
cord-002994-1zjrunzc	271	3	other	other	ADJ
cord-002994-1zjrunzc	271	4	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	271	5	-	-	PUNCT
cord-002994-1zjrunzc	271	6	borne	bear	VERB
cord-002994-1zjrunzc	271	7	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	271	8	genomes	genome	NOUN
cord-002994-1zjrunzc	271	9	,	,	PUNCT
cord-002994-1zjrunzc	271	10	bagv	bagv	PROPN
cord-002994-1zjrunzc	271	11	genome	genome	PROPN
cord-002994-1zjrunzc	271	12	harbored	harbored	PROPN
cord-002994-1zjrunzc	271	13	structural	structural	PROPN
cord-002994-1zjrunzc	271	14	rna	rna	PROPN
cord-002994-1zjrunzc	271	15	domains	domain	NOUN
cord-002994-1zjrunzc	271	16	both	both	PRON
cord-002994-1zjrunzc	271	17	in	in	ADP
cord-002994-1zjrunzc	271	18	5	5	NUM
cord-002994-1zjrunzc	271	19	and	and	CCONJ
cord-002994-1zjrunzc	271	20	3	3	NUM
cord-002994-1zjrunzc	271	21	utrs	utrs	ADJ
cord-002994-1zjrunzc	271	22	which	which	PRON
cord-002994-1zjrunzc	271	23	play	play	VERB
cord-002994-1zjrunzc	271	24	a	a	DET
cord-002994-1zjrunzc	271	25	major	major	ADJ
cord-002994-1zjrunzc	271	26	role	role	NOUN
cord-002994-1zjrunzc	271	27	in	in	ADP
cord-002994-1zjrunzc	271	28	flaviviral	flaviviral	ADJ
cord-002994-1zjrunzc	271	29	replication	replication	NOUN
cord-002994-1zjrunzc	271	30	and	and	CCONJ
cord-002994-1zjrunzc	271	31	interactions	interaction	NOUN
cord-002994-1zjrunzc	271	32	with	with	ADP
cord-002994-1zjrunzc	271	33	host	host	NOUN
cord-002994-1zjrunzc	271	34	proteins	protein	NOUN
cord-002994-1zjrunzc	271	35	and	and	CCONJ
cord-002994-1zjrunzc	271	36	regulate	regulate	VERB
cord-002994-1zjrunzc	271	37	cellular	cellular	ADJ
cord-002994-1zjrunzc	271	38	response	response	NOUN
cord-002994-1zjrunzc	271	39	to	to	ADP
cord-002994-1zjrunzc	271	40	infection	infection	NOUN
cord-002994-1zjrunzc	272	1	[	[	PUNCT
cord-002994-1zjrunzc	272	2	47	47	NUM
cord-002994-1zjrunzc	272	3	,	,	PUNCT
cord-002994-1zjrunzc	272	4	48	48	NUM
cord-002994-1zjrunzc	272	5	]	]	PUNCT
cord-002994-1zjrunzc	272	6	.	.	PUNCT
cord-002994-1zjrunzc	273	1	however	however	ADV
cord-002994-1zjrunzc	273	2	,	,	PUNCT
cord-002994-1zjrunzc	273	3	differences	difference	NOUN
cord-002994-1zjrunzc	273	4	in	in	ADP
cord-002994-1zjrunzc	273	5	determination	determination	NOUN
cord-002994-1zjrunzc	273	6	of	of	ADP
cord-002994-1zjrunzc	273	7	structural	structural	ADJ
cord-002994-1zjrunzc	273	8	rna	rna	PROPN
cord-002994-1zjrunzc	273	9	domains	domain	NOUN
cord-002994-1zjrunzc	273	10	in	in	ADP
cord-002994-1zjrunzc	273	11	5	5	NUM
cord-002994-1zjrunzc	273	12	utr	utr	NOUN
cord-002994-1zjrunzc	273	13	between	between	ADP
cord-002994-1zjrunzc	273	14	the	the	DET
cord-002994-1zjrunzc	273	15	rnaz	rnaz	NOUN
cord-002994-1zjrunzc	273	16	and	and	CCONJ
cord-002994-1zjrunzc	273	17	the	the	DET
cord-002994-1zjrunzc	273	18	rnaalifold	rnaalifold	ADJ
cord-002994-1zjrunzc	273	19	methods	method	NOUN
cord-002994-1zjrunzc	273	20	used	use	VERB
cord-002994-1zjrunzc	273	21	in	in	ADP
cord-002994-1zjrunzc	273	22	this	this	DET
cord-002994-1zjrunzc	273	23	study	study	NOUN
cord-002994-1zjrunzc	273	24	could	could	AUX
cord-002994-1zjrunzc	273	25	be	be	AUX
cord-002994-1zjrunzc	273	26	attributed	attribute	VERB
cord-002994-1zjrunzc	273	27	to	to	ADP
cord-002994-1zjrunzc	273	28	variations	variation	NOUN
cord-002994-1zjrunzc	273	29	in	in	ADP
cord-002994-1zjrunzc	273	30	algorithm	algorithm	NOUN
cord-002994-1zjrunzc	273	31	of	of	ADP
cord-002994-1zjrunzc	273	32	analysis	analysis	NOUN
cord-002994-1zjrunzc	273	33	used	use	VERB
cord-002994-1zjrunzc	273	34	by	by	ADP
cord-002994-1zjrunzc	273	35	each	each	DET
cord-002994-1zjrunzc	273	36	method	method	NOUN
cord-002994-1zjrunzc	273	37	[	[	X
cord-002994-1zjrunzc	273	38	21	21	NUM
cord-002994-1zjrunzc	273	39	]	]	PUNCT
cord-002994-1zjrunzc	273	40	[	[	X
cord-002994-1zjrunzc	273	41	22	22	NUM
cord-002994-1zjrunzc	273	42	]	]	PUNCT
cord-002994-1zjrunzc	274	1	[	[	X
cord-002994-1zjrunzc	274	2	23	23	NUM
cord-002994-1zjrunzc	274	3	]	]	PUNCT
cord-002994-1zjrunzc	274	4	[	[	X
cord-002994-1zjrunzc	274	5	24	24	NUM
cord-002994-1zjrunzc	274	6	]	]	PUNCT
cord-002994-1zjrunzc	274	7	.	.	PUNCT
cord-002994-1zjrunzc	275	1	the	the	DET
cord-002994-1zjrunzc	275	2	small	small	ADJ
cord-002994-1zjrunzc	275	3	subgenomic	subgenomic	PROPN
cord-002994-1zjrunzc	275	4	rna	rna	PROPN
cord-002994-1zjrunzc	275	5	(	(	PUNCT
cord-002994-1zjrunzc	275	6	sfrna	sfrna	PROPN
cord-002994-1zjrunzc	275	7	)	)	PUNCT
cord-002994-1zjrunzc	275	8	identified	identify	VERB
cord-002994-1zjrunzc	275	9	in	in	ADP
cord-002994-1zjrunzc	275	10	the	the	DET
cord-002994-1zjrunzc	275	11	3	3	NUM
cord-002994-1zjrunzc	275	12	utr	utr	NOUN
cord-002994-1zjrunzc	275	13	of	of	ADP
cord-002994-1zjrunzc	275	14	bagv	bagv	PROPN
cord-002994-1zjrunzc	275	15	is	be	AUX
cord-002994-1zjrunzc	275	16	generated	generate	VERB
cord-002994-1zjrunzc	275	17	through	through	ADP
cord-002994-1zjrunzc	275	18	incomplete	incomplete	ADJ
cord-002994-1zjrunzc	275	19	degradation	degradation	NOUN
cord-002994-1zjrunzc	275	20	of	of	ADP
cord-002994-1zjrunzc	275	21	the	the	DET
cord-002994-1zjrunzc	275	22	viral	viral	ADJ
cord-002994-1zjrunzc	275	23	genome	genome	NOUN
cord-002994-1zjrunzc	275	24	by	by	ADP
cord-002994-1zjrunzc	275	25	cellular	cellular	ADJ
cord-002994-1zjrunzc	275	26	5	5	NUM
cord-002994-1zjrunzc	275	27	-3	-3	NOUN
cord-002994-1zjrunzc	275	28	exonuclease	exonuclease	NOUN
cord-002994-1zjrunzc	275	29	xrn1	xrn1	NOUN
cord-002994-1zjrunzc	275	30	[	[	PUNCT
cord-002994-1zjrunzc	275	31	49	49	NUM
cord-002994-1zjrunzc	275	32	,	,	PUNCT
cord-002994-1zjrunzc	275	33	50	50	NUM
cord-002994-1zjrunzc	275	34	]	]	PUNCT
cord-002994-1zjrunzc	275	35	and	and	CCONJ
cord-002994-1zjrunzc	275	36	plays	play	VERB
cord-002994-1zjrunzc	275	37	an	an	DET
cord-002994-1zjrunzc	275	38	important	important	ADJ
cord-002994-1zjrunzc	275	39	role	role	NOUN
cord-002994-1zjrunzc	275	40	in	in	ADP
cord-002994-1zjrunzc	275	41	viral	viral	ADJ
cord-002994-1zjrunzc	275	42	pathogenicity	pathogenicity	NOUN
cord-002994-1zjrunzc	275	43	[	[	PUNCT
cord-002994-1zjrunzc	275	44	49	49	NUM
cord-002994-1zjrunzc	275	45	]	]	PUNCT
cord-002994-1zjrunzc	275	46	and	and	CCONJ
cord-002994-1zjrunzc	275	47	modulation	modulation	NOUN
cord-002994-1zjrunzc	275	48	of	of	ADP
cord-002994-1zjrunzc	275	49	host	host	NOUN
cord-002994-1zjrunzc	275	50	responses	response	NOUN
cord-002994-1zjrunzc	275	51	[	[	X
cord-002994-1zjrunzc	275	52	51	51	NUM
cord-002994-1zjrunzc	275	53	,	,	PUNCT
cord-002994-1zjrunzc	275	54	52	52	NUM
cord-002994-1zjrunzc	275	55	]	]	PUNCT
cord-002994-1zjrunzc	275	56	.	.	PUNCT
cord-002994-1zjrunzc	276	1	in	in	ADP
cord-002994-1zjrunzc	276	2	addition	addition	NOUN
cord-002994-1zjrunzc	276	3	,	,	PUNCT
cord-002994-1zjrunzc	276	4	the	the	DET
cord-002994-1zjrunzc	276	5	stable	stable	ADJ
cord-002994-1zjrunzc	276	6	3	3	NUM
cord-002994-1zjrunzc	276	7	'	'	PART
cord-002994-1zjrunzc	276	8	terminus	terminus	NOUN
cord-002994-1zjrunzc	276	9	region	region	NOUN
cord-002994-1zjrunzc	276	10	of	of	ADP
cord-002994-1zjrunzc	276	11	the	the	DET
cord-002994-1zjrunzc	276	12	sfrna	sfrna	PROPN
cord-002994-1zjrunzc	276	13	following	follow	VERB
cord-002994-1zjrunzc	276	14	the	the	DET
cord-002994-1zjrunzc	276	15	dumbbell	dumbbell	NOUN
cord-002994-1zjrunzc	276	16	structures	structure	NOUN
cord-002994-1zjrunzc	276	17	(	(	PUNCT
cord-002994-1zjrunzc	276	18	db1	db1	NOUN
cord-002994-1zjrunzc	276	19	and	and	CCONJ
cord-002994-1zjrunzc	276	20	db2	db2	PROPN
cord-002994-1zjrunzc	276	21	)	)	PUNCT
cord-002994-1zjrunzc	276	22	and	and	CCONJ
cord-002994-1zjrunzc	276	23	complementary	complementary	ADJ
cord-002994-1zjrunzc	276	24	to	to	ADP
cord-002994-1zjrunzc	276	25	the	the	DET
cord-002994-1zjrunzc	276	26	5	5	NUM
cord-002994-1zjrunzc	276	27	terminus	terminus	NOUN
cord-002994-1zjrunzc	276	28	of	of	ADP
cord-002994-1zjrunzc	276	29	the	the	DET
cord-002994-1zjrunzc	276	30	5	5	NUM
cord-002994-1zjrunzc	276	31	utr	utr	NOUN
cord-002994-1zjrunzc	276	32	,	,	PUNCT
cord-002994-1zjrunzc	276	33	was	be	AUX
cord-002994-1zjrunzc	276	34	shown	show	VERB
cord-002994-1zjrunzc	276	35	to	to	PART
cord-002994-1zjrunzc	276	36	be	be	AUX
cord-002994-1zjrunzc	276	37	necessary	necessary	ADJ
cord-002994-1zjrunzc	276	38	in	in	ADP
cord-002994-1zjrunzc	276	39	genomic	genomic	PROPN
cord-002994-1zjrunzc	276	40	rna	rna	PROPN
cord-002994-1zjrunzc	276	41	cyclisation	cyclisation	NOUN
cord-002994-1zjrunzc	276	42	for	for	ADP
cord-002994-1zjrunzc	276	43	viral	viral	ADJ
cord-002994-1zjrunzc	276	44	replication	replication	NOUN
cord-002994-1zjrunzc	276	45	and	and	CCONJ
cord-002994-1zjrunzc	276	46	translation	translation	NOUN
cord-002994-1zjrunzc	276	47	[	[	X
cord-002994-1zjrunzc	276	48	46	46	NUM
cord-002994-1zjrunzc	276	49	]	]	PUNCT
cord-002994-1zjrunzc	276	50	.	.	PUNCT
cord-002994-1zjrunzc	277	1	the	the	DET
cord-002994-1zjrunzc	277	2	sfrna	sfrna	PROPN
cord-002994-1zjrunzc	277	3	can	can	AUX
cord-002994-1zjrunzc	277	4	be	be	AUX
cord-002994-1zjrunzc	277	5	in	in	ADP
cord-002994-1zjrunzc	277	6	competition	competition	NOUN
cord-002994-1zjrunzc	277	7	with	with	ADP
cord-002994-1zjrunzc	277	8	the	the	DET
cord-002994-1zjrunzc	277	9	3	3	NUM
cord-002994-1zjrunzc	277	10	utr	utr	NOUN
cord-002994-1zjrunzc	277	11	of	of	ADP
cord-002994-1zjrunzc	277	12	genomic	genomic	PROPN
cord-002994-1zjrunzc	277	13	rna	rna	PROPN
cord-002994-1zjrunzc	277	14	in	in	ADP
cord-002994-1zjrunzc	277	15	binding	bind	VERB
cord-002994-1zjrunzc	277	16	to	to	ADP
cord-002994-1zjrunzc	277	17	proteins	protein	NOUN
cord-002994-1zjrunzc	277	18	of	of	ADP
cord-002994-1zjrunzc	277	19	viral	viral	ADJ
cord-002994-1zjrunzc	277	20	replication	replication	NOUN
cord-002994-1zjrunzc	277	21	complexes	complex	NOUN
cord-002994-1zjrunzc	277	22	(	(	PUNCT
cord-002994-1zjrunzc	277	23	rc	rc	NOUN
cord-002994-1zjrunzc	277	24	)	)	PUNCT
cord-002994-1zjrunzc	277	25	[	[	X
cord-002994-1zjrunzc	277	26	53	53	NUM
cord-002994-1zjrunzc	277	27	]	]	PUNCT
cord-002994-1zjrunzc	277	28	and/or	and/or	CCONJ
cord-002994-1zjrunzc	277	29	cellular	cellular	ADJ
cord-002994-1zjrunzc	277	30	machinery	machinery	NOUN
cord-002994-1zjrunzc	277	31	[	[	PUNCT
cord-002994-1zjrunzc	277	32	54	54	NUM
cord-002994-1zjrunzc	277	33	]	]	PUNCT
cord-002994-1zjrunzc	277	34	.	.	PUNCT
cord-002994-1zjrunzc	278	1	thus	thus	ADV
cord-002994-1zjrunzc	278	2	,	,	PUNCT
cord-002994-1zjrunzc	278	3	it	it	PRON
cord-002994-1zjrunzc	278	4	slows	slow	VERB
cord-002994-1zjrunzc	278	5	down	down	ADP
cord-002994-1zjrunzc	278	6	the	the	DET
cord-002994-1zjrunzc	278	7	replication	replication	NOUN
cord-002994-1zjrunzc	278	8	or	or	CCONJ
cord-002994-1zjrunzc	278	9	translation	translation	NOUN
cord-002994-1zjrunzc	278	10	and	and	CCONJ
cord-002994-1zjrunzc	278	11	assembly	assembly	NOUN
cord-002994-1zjrunzc	278	12	of	of	ADP
cord-002994-1zjrunzc	278	13	particles	particle	NOUN
cord-002994-1zjrunzc	278	14	[	[	X
cord-002994-1zjrunzc	278	15	51	51	NUM
cord-002994-1zjrunzc	278	16	]	]	PUNCT
cord-002994-1zjrunzc	278	17	.	.	PUNCT
cord-002994-1zjrunzc	279	1	the	the	DET
cord-002994-1zjrunzc	279	2	3	3	NUM
cord-002994-1zjrunzc	279	3	utr	utr	NOUN
cord-002994-1zjrunzc	279	4	region	region	NOUN
cord-002994-1zjrunzc	279	5	is	be	AUX
cord-002994-1zjrunzc	279	6	important	important	ADJ
cord-002994-1zjrunzc	279	7	for	for	ADP
cord-002994-1zjrunzc	279	8	translation	translation	NOUN
cord-002994-1zjrunzc	279	9	and	and	CCONJ
cord-002994-1zjrunzc	279	10	replication	replication	NOUN
cord-002994-1zjrunzc	279	11	of	of	ADP
cord-002994-1zjrunzc	279	12	the	the	DET
cord-002994-1zjrunzc	279	13	rna	rna	PROPN
cord-002994-1zjrunzc	279	14	genome	genome	NOUN
cord-002994-1zjrunzc	279	15	through	through	ADP
cord-002994-1zjrunzc	279	16	interactions	interaction	NOUN
cord-002994-1zjrunzc	279	17	with	with	ADP
cord-002994-1zjrunzc	279	18	viral	viral	ADJ
cord-002994-1zjrunzc	279	19	and	and	CCONJ
cord-002994-1zjrunzc	279	20	host	host	NOUN
cord-002994-1zjrunzc	279	21	proteins	protein	NOUN
cord-002994-1zjrunzc	279	22	,	,	PUNCT
cord-002994-1zjrunzc	279	23	genome	genome	NOUN
cord-002994-1zjrunzc	279	24	stabilization	stabilization	NOUN
cord-002994-1zjrunzc	279	25	,	,	PUNCT
cord-002994-1zjrunzc	279	26	and	and	CCONJ
cord-002994-1zjrunzc	279	27	rna	rna	NOUN
cord-002994-1zjrunzc	279	28	packaging	packaging	NOUN
cord-002994-1zjrunzc	279	29	[	[	PUNCT
cord-002994-1zjrunzc	279	30	55	55	NUM
cord-002994-1zjrunzc	279	31	]	]	PUNCT
cord-002994-1zjrunzc	279	32	.	.	PUNCT
cord-002994-1zjrunzc	280	1	a	a	DET
cord-002994-1zjrunzc	280	2	better	well	ADJ
cord-002994-1zjrunzc	280	3	understanding	understanding	NOUN
cord-002994-1zjrunzc	280	4	of	of	ADP
cord-002994-1zjrunzc	280	5	the	the	DET
cord-002994-1zjrunzc	280	6	potential	potential	ADJ
cord-002994-1zjrunzc	280	7	impact	impact	NOUN
cord-002994-1zjrunzc	280	8	of	of	ADP
cord-002994-1zjrunzc	280	9	3	3	NUM
cord-002994-1zjrunzc	280	10	utr	utr	NOUN
cord-002994-1zjrunzc	280	11	variations	variation	NOUN
cord-002994-1zjrunzc	280	12	in	in	ADP
cord-002994-1zjrunzc	280	13	replication	replication	NOUN
cord-002994-1zjrunzc	280	14	of	of	ADP
cord-002994-1zjrunzc	280	15	bagv	bagv	NOUN
cord-002994-1zjrunzc	280	16	could	could	AUX
cord-002994-1zjrunzc	280	17	be	be	AUX
cord-002994-1zjrunzc	280	18	important	important	ADJ
cord-002994-1zjrunzc	280	19	in	in	ADP
cord-002994-1zjrunzc	280	20	the	the	DET
cord-002994-1zjrunzc	280	21	study	study	NOUN
cord-002994-1zjrunzc	280	22	of	of	ADP
cord-002994-1zjrunzc	280	23	mechanisms	mechanism	NOUN
cord-002994-1zjrunzc	280	24	implicated	implicate	VERB
cord-002994-1zjrunzc	280	25	in	in	ADP
cord-002994-1zjrunzc	280	26	their	their	PRON
cord-002994-1zjrunzc	280	27	pathogenicity	pathogenicity	NOUN
cord-002994-1zjrunzc	280	28	[	[	PUNCT
cord-002994-1zjrunzc	280	29	56	56	NUM
cord-002994-1zjrunzc	280	30	,	,	PUNCT
cord-002994-1zjrunzc	280	31	57	57	NUM
cord-002994-1zjrunzc	280	32	]	]	PUNCT
cord-002994-1zjrunzc	280	33	.	.	PUNCT
cord-002994-1zjrunzc	281	1	most	most	ADJ
cord-002994-1zjrunzc	281	2	motifs	motif	NOUN
cord-002994-1zjrunzc	281	3	linked	link	VERB
cord-002994-1zjrunzc	281	4	to	to	ADP
cord-002994-1zjrunzc	281	5	virulence	virulence	NOUN
cord-002994-1zjrunzc	281	6	previously	previously	ADV
cord-002994-1zjrunzc	281	7	described	describe	VERB
cord-002994-1zjrunzc	281	8	in	in	ADP
cord-002994-1zjrunzc	281	9	these	these	DET
cord-002994-1zjrunzc	281	10	proteins	protein	NOUN
cord-002994-1zjrunzc	281	11	of	of	ADP
cord-002994-1zjrunzc	281	12	other	other	ADJ
cord-002994-1zjrunzc	281	13	mbfvs	mbfv	NOUN
cord-002994-1zjrunzc	281	14	were	be	AUX
cord-002994-1zjrunzc	281	15	conserved	conserve	VERB
cord-002994-1zjrunzc	281	16	among	among	ADP
cord-002994-1zjrunzc	281	17	bagv	bagv	NOUN
cord-002994-1zjrunzc	281	18	isolates	isolate	NOUN
cord-002994-1zjrunzc	281	19	.	.	PUNCT
cord-002994-1zjrunzc	282	1	however	however	ADV
cord-002994-1zjrunzc	282	2	,	,	PUNCT
cord-002994-1zjrunzc	282	3	some	some	DET
cord-002994-1zjrunzc	282	4	non	non	ADJ
cord-002994-1zjrunzc	282	5	-	-	ADJ
cord-002994-1zjrunzc	282	6	conservative	conservative	ADJ
cord-002994-1zjrunzc	282	7	mutations	mutation	NOUN
cord-002994-1zjrunzc	282	8	were	be	AUX
cord-002994-1zjrunzc	282	9	identified	identify	VERB
cord-002994-1zjrunzc	282	10	in	in	ADP
cord-002994-1zjrunzc	282	11	e	e	PROPN
cord-002994-1zjrunzc	282	12	,	,	PUNCT
cord-002994-1zjrunzc	282	13	ns1	ns1	PROPN
cord-002994-1zjrunzc	282	14	,	,	PUNCT
cord-002994-1zjrunzc	282	15	ns3	ns3	NOUN
cord-002994-1zjrunzc	282	16	and	and	CCONJ
cord-002994-1zjrunzc	282	17	ns5	ns5	PROPN
cord-002994-1zjrunzc	282	18	.	.	PUNCT
cord-002994-1zjrunzc	283	1	in	in	ADP
cord-002994-1zjrunzc	283	2	general	general	ADJ
cord-002994-1zjrunzc	283	3	,	,	PUNCT
cord-002994-1zjrunzc	283	4	non	non	ADJ
cord-002994-1zjrunzc	283	5	-	-	ADJ
cord-002994-1zjrunzc	283	6	conservative	conservative	ADJ
cord-002994-1zjrunzc	283	7	amino	amino	NOUN
cord-002994-1zjrunzc	283	8	acid	acid	NOUN
cord-002994-1zjrunzc	283	9	mutations	mutation	NOUN
cord-002994-1zjrunzc	283	10	(	(	PUNCT
cord-002994-1zjrunzc	283	11	nc	nc	PROPN
cord-002994-1zjrunzc	283	12	)	)	PUNCT
cord-002994-1zjrunzc	283	13	are	be	AUX
cord-002994-1zjrunzc	283	14	spontaneous	spontaneous	ADJ
cord-002994-1zjrunzc	283	15	,	,	PUNCT
cord-002994-1zjrunzc	283	16	rare	rare	ADJ
cord-002994-1zjrunzc	283	17	,	,	PUNCT
cord-002994-1zjrunzc	283	18	and	and	CCONJ
cord-002994-1zjrunzc	283	19	hazardous	hazardous	ADJ
cord-002994-1zjrunzc	283	20	,	,	PUNCT
cord-002994-1zjrunzc	283	21	and	and	CCONJ
cord-002994-1zjrunzc	283	22	then	then	ADV
cord-002994-1zjrunzc	283	23	represent	represent	VERB
cord-002994-1zjrunzc	283	24	the	the	DET
cord-002994-1zjrunzc	283	25	main	main	ADJ
cord-002994-1zjrunzc	283	26	causes	cause	NOUN
cord-002994-1zjrunzc	283	27	of	of	ADP
cord-002994-1zjrunzc	283	28	genetic	genetic	ADJ
cord-002994-1zjrunzc	283	29	diversity	diversity	NOUN
cord-002994-1zjrunzc	283	30	.	.	PUNCT
cord-002994-1zjrunzc	284	1	thus	thus	ADV
cord-002994-1zjrunzc	284	2	,	,	PUNCT
cord-002994-1zjrunzc	284	3	non	non	ADJ
cord-002994-1zjrunzc	284	4	-	-	ADJ
cord-002994-1zjrunzc	284	5	conservative	conservative	ADJ
cord-002994-1zjrunzc	284	6	mutations	mutation	NOUN
cord-002994-1zjrunzc	284	7	observed	observe	VERB
cord-002994-1zjrunzc	284	8	on	on	ADP
cord-002994-1zjrunzc	284	9	bagv	bagv	PROPN
cord-002994-1zjrunzc	284	10	genome	genome	NOUN
cord-002994-1zjrunzc	284	11	could	could	AUX
cord-002994-1zjrunzc	284	12	modulate	modulate	VERB
cord-002994-1zjrunzc	284	13	viral	viral	ADJ
cord-002994-1zjrunzc	284	14	phenotypes	phenotype	NOUN
cord-002994-1zjrunzc	284	15	of	of	ADP
cord-002994-1zjrunzc	284	16	particular	particular	ADJ
cord-002994-1zjrunzc	284	17	isolates	isolate	NOUN
cord-002994-1zjrunzc	284	18	in	in	ADP
cord-002994-1zjrunzc	284	19	mechanisms	mechanism	NOUN
cord-002994-1zjrunzc	284	20	such	such	ADJ
cord-002994-1zjrunzc	284	21	as	as	ADP
cord-002994-1zjrunzc	284	22	virus	virus	NOUN
cord-002994-1zjrunzc	284	23	cell	cell	NOUN
cord-002994-1zjrunzc	284	24	entry	entry	NOUN
cord-002994-1zjrunzc	284	25	,	,	PUNCT
cord-002994-1zjrunzc	284	26	replication	replication	NOUN
cord-002994-1zjrunzc	284	27	,	,	PUNCT
cord-002994-1zjrunzc	284	28	production	production	NOUN
cord-002994-1zjrunzc	284	29	of	of	ADP
cord-002994-1zjrunzc	284	30	viral	viral	ADJ
cord-002994-1zjrunzc	284	31	particles	particle	NOUN
cord-002994-1zjrunzc	284	32	,	,	PUNCT
cord-002994-1zjrunzc	284	33	and	and	CCONJ
cord-002994-1zjrunzc	284	34	assembly	assembly	NOUN
cord-002994-1zjrunzc	284	35	,	,	PUNCT
cord-002994-1zjrunzc	284	36	and	and	CCONJ
cord-002994-1zjrunzc	284	37	cause	cause	VERB
cord-002994-1zjrunzc	284	38	modifications	modification	NOUN
cord-002994-1zjrunzc	284	39	in	in	ADP
cord-002994-1zjrunzc	284	40	post	post	ADJ
cord-002994-1zjrunzc	284	41	-	-	ADJ
cord-002994-1zjrunzc	284	42	translational	translational	ADJ
cord-002994-1zjrunzc	284	43	regulation	regulation	NOUN
cord-002994-1zjrunzc	284	44	as	as	SCONJ
cord-002994-1zjrunzc	284	45	previously	previously	ADV
cord-002994-1zjrunzc	284	46	demonstrated	demonstrate	VERB
cord-002994-1zjrunzc	284	47	for	for	ADP
cord-002994-1zjrunzc	284	48	other	other	ADJ
cord-002994-1zjrunzc	284	49	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	284	50	such	such	ADJ
cord-002994-1zjrunzc	284	51	as	as	ADP
cord-002994-1zjrunzc	284	52	denv	denv	ADJ
cord-002994-1zjrunzc	284	53	[	[	X
cord-002994-1zjrunzc	284	54	58	58	NUM
cord-002994-1zjrunzc	284	55	]	]	PUNCT
cord-002994-1zjrunzc	285	1	[	[	X
cord-002994-1zjrunzc	285	2	59	59	NUM
cord-002994-1zjrunzc	285	3	]	]	PUNCT
cord-002994-1zjrunzc	285	4	[	[	X
cord-002994-1zjrunzc	285	5	60	60	NUM
cord-002994-1zjrunzc	285	6	]	]	PUNCT
cord-002994-1zjrunzc	285	7	.	.	PUNCT
cord-002994-1zjrunzc	286	1	the	the	DET
cord-002994-1zjrunzc	286	2	e	e	PROPN
cord-002994-1zjrunzc	286	3	protein	protein	NOUN
cord-002994-1zjrunzc	286	4	is	be	AUX
cord-002994-1zjrunzc	286	5	involved	involve	VERB
cord-002994-1zjrunzc	286	6	in	in	ADP
cord-002994-1zjrunzc	286	7	cell	cell	NOUN
cord-002994-1zjrunzc	286	8	receptor	receptor	NOUN
cord-002994-1zjrunzc	286	9	recognition	recognition	NOUN
cord-002994-1zjrunzc	286	10	,	,	PUNCT
cord-002994-1zjrunzc	286	11	attachment	attachment	NOUN
cord-002994-1zjrunzc	286	12	,	,	PUNCT
cord-002994-1zjrunzc	286	13	cell	cell	NOUN
cord-002994-1zjrunzc	286	14	fusion	fusion	NOUN
cord-002994-1zjrunzc	286	15	,	,	PUNCT
cord-002994-1zjrunzc	286	16	tropism	tropism	NOUN
cord-002994-1zjrunzc	286	17	,	,	PUNCT
cord-002994-1zjrunzc	286	18	and	and	CCONJ
cord-002994-1zjrunzc	286	19	virulence	virulence	NOUN
cord-002994-1zjrunzc	286	20	[	[	PUNCT
cord-002994-1zjrunzc	286	21	58	58	NUM
cord-002994-1zjrunzc	286	22	]	]	PUNCT
cord-002994-1zjrunzc	286	23	.	.	PUNCT
cord-002994-1zjrunzc	287	1	ns1	ns1	PROPN
cord-002994-1zjrunzc	287	2	is	be	AUX
cord-002994-1zjrunzc	287	3	the	the	DET
cord-002994-1zjrunzc	287	4	most	most	ADV
cord-002994-1zjrunzc	287	5	conserved	conserve	VERB
cord-002994-1zjrunzc	287	6	non	non	ADJ
cord-002994-1zjrunzc	287	7	-	-	ADJ
cord-002994-1zjrunzc	287	8	structural	structural	ADJ
cord-002994-1zjrunzc	287	9	protein	protein	NOUN
cord-002994-1zjrunzc	287	10	of	of	ADP
cord-002994-1zjrunzc	287	11	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	287	12	.	.	PUNCT
cord-002994-1zjrunzc	288	1	associated	associate	VERB
cord-002994-1zjrunzc	288	2	with	with	ADP
cord-002994-1zjrunzc	288	3	the	the	DET
cord-002994-1zjrunzc	288	4	other	other	ADJ
cord-002994-1zjrunzc	288	5	non	non	ADJ
cord-002994-1zjrunzc	288	6	-	-	ADJ
cord-002994-1zjrunzc	288	7	structural	structural	ADJ
cord-002994-1zjrunzc	288	8	proteins	protein	NOUN
cord-002994-1zjrunzc	288	9	,	,	PUNCT
cord-002994-1zjrunzc	288	10	the	the	DET
cord-002994-1zjrunzc	288	11	ns1	ns1	NOUN
cord-002994-1zjrunzc	288	12	protein	protein	NOUN
cord-002994-1zjrunzc	288	13	plays	play	VERB
cord-002994-1zjrunzc	288	14	an	an	DET
cord-002994-1zjrunzc	288	15	important	important	ADJ
cord-002994-1zjrunzc	288	16	function	function	NOUN
cord-002994-1zjrunzc	288	17	in	in	ADP
cord-002994-1zjrunzc	288	18	viral	viral	ADJ
cord-002994-1zjrunzc	288	19	replication	replication	NOUN
cord-002994-1zjrunzc	288	20	and	and	CCONJ
cord-002994-1zjrunzc	288	21	assembly	assembly	NOUN
cord-002994-1zjrunzc	288	22	and	and	CCONJ
cord-002994-1zjrunzc	288	23	viral	viral	ADJ
cord-002994-1zjrunzc	288	24	escape	escape	NOUN
cord-002994-1zjrunzc	288	25	to	to	PART
cord-002994-1zjrunzc	288	26	host	host	VERB
cord-002994-1zjrunzc	288	27	innate	innate	ADJ
cord-002994-1zjrunzc	288	28	immune	immune	ADJ
cord-002994-1zjrunzc	288	29	response	response	NOUN
cord-002994-1zjrunzc	288	30	[	[	X
cord-002994-1zjrunzc	288	31	61	61	NUM
cord-002994-1zjrunzc	288	32	]	]	PUNCT
cord-002994-1zjrunzc	288	33	.	.	PUNCT
cord-002994-1zjrunzc	289	1	the	the	DET
cord-002994-1zjrunzc	289	2	ns3	ns3	ADJ
cord-002994-1zjrunzc	289	3	protein	protein	NOUN
cord-002994-1zjrunzc	289	4	is	be	AUX
cord-002994-1zjrunzc	289	5	the	the	DET
cord-002994-1zjrunzc	289	6	main	main	ADJ
cord-002994-1zjrunzc	289	7	component	component	NOUN
cord-002994-1zjrunzc	289	8	of	of	ADP
cord-002994-1zjrunzc	289	9	the	the	DET
cord-002994-1zjrunzc	289	10	replication	replication	NOUN
cord-002994-1zjrunzc	289	11	machinery	machinery	NOUN
cord-002994-1zjrunzc	289	12	and	and	CCONJ
cord-002994-1zjrunzc	289	13	ensures	ensure	VERB
cord-002994-1zjrunzc	289	14	multiple	multiple	ADJ
cord-002994-1zjrunzc	289	15	functions	function	NOUN
cord-002994-1zjrunzc	289	16	in	in	ADP
cord-002994-1zjrunzc	289	17	viral	viral	ADJ
cord-002994-1zjrunzc	289	18	evasion	evasion	NOUN
cord-002994-1zjrunzc	289	19	to	to	PART
cord-002994-1zjrunzc	289	20	host	host	VERB
cord-002994-1zjrunzc	289	21	antiviral	antiviral	ADJ
cord-002994-1zjrunzc	289	22	response	response	NOUN
cord-002994-1zjrunzc	289	23	and	and	CCONJ
cord-002994-1zjrunzc	289	24	in	in	ADP
cord-002994-1zjrunzc	289	25	production	production	NOUN
cord-002994-1zjrunzc	289	26	and	and	CCONJ
cord-002994-1zjrunzc	289	27	assembly	assembly	NOUN
cord-002994-1zjrunzc	289	28	of	of	ADP
cord-002994-1zjrunzc	289	29	infectious	infectious	ADJ
cord-002994-1zjrunzc	289	30	viral	viral	ADJ
cord-002994-1zjrunzc	289	31	particles	particle	NOUN
cord-002994-1zjrunzc	289	32	[	[	X
cord-002994-1zjrunzc	289	33	62	62	NUM
cord-002994-1zjrunzc	289	34	]	]	PUNCT
cord-002994-1zjrunzc	289	35	.	.	PUNCT
cord-002994-1zjrunzc	290	1	the	the	DET
cord-002994-1zjrunzc	290	2	ns5	ns5	PROPN
cord-002994-1zjrunzc	290	3	protein	protein	NOUN
cord-002994-1zjrunzc	290	4	is	be	AUX
cord-002994-1zjrunzc	290	5	the	the	DET
cord-002994-1zjrunzc	290	6	largest	large	ADJ
cord-002994-1zjrunzc	290	7	viral	viral	ADJ
cord-002994-1zjrunzc	290	8	protein	protein	NOUN
cord-002994-1zjrunzc	290	9	that	that	PRON
cord-002994-1zjrunzc	290	10	serves	serve	VERB
cord-002994-1zjrunzc	290	11	as	as	ADP
cord-002994-1zjrunzc	290	12	the	the	DET
cord-002994-1zjrunzc	290	13	rna	rna	NOUN
cord-002994-1zjrunzc	290	14	-	-	PUNCT
cord-002994-1zjrunzc	290	15	dependent	dependent	ADJ
cord-002994-1zjrunzc	290	16	rna	rna	NOUN
cord-002994-1zjrunzc	290	17	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	290	18	(	(	PUNCT
cord-002994-1zjrunzc	290	19	rdrp	rdrp	PROPN
cord-002994-1zjrunzc	290	20	)	)	PUNCT
cord-002994-1zjrunzc	290	21	and	and	CCONJ
cord-002994-1zjrunzc	290	22	performs	perform	VERB
cord-002994-1zjrunzc	290	23	multiple	multiple	ADJ
cord-002994-1zjrunzc	290	24	functions	function	NOUN
cord-002994-1zjrunzc	290	25	essential	essential	ADJ
cord-002994-1zjrunzc	290	26	for	for	ADP
cord-002994-1zjrunzc	290	27	viral	viral	ADJ
cord-002994-1zjrunzc	290	28	replication	replication	NOUN
cord-002994-1zjrunzc	290	29	,	,	PUNCT
cord-002994-1zjrunzc	290	30	including	include	VERB
cord-002994-1zjrunzc	290	31	processing	process	VERB
cord-002994-1zjrunzc	290	32	the	the	DET
cord-002994-1zjrunzc	290	33	viral	viral	ADJ
cord-002994-1zjrunzc	290	34	polyprotein	polyprotein	NOUN
cord-002994-1zjrunzc	290	35	,	,	PUNCT
cord-002994-1zjrunzc	290	36	replicating	replicate	VERB
cord-002994-1zjrunzc	290	37	the	the	DET
cord-002994-1zjrunzc	290	38	viral	viral	ADJ
cord-002994-1zjrunzc	290	39	rna	rna	NOUN
cord-002994-1zjrunzc	290	40	.	.	PUNCT
cord-002994-1zjrunzc	291	1	sharing	share	VERB
cord-002994-1zjrunzc	291	2	these	these	DET
cord-002994-1zjrunzc	291	3	motifs	motif	NOUN
cord-002994-1zjrunzc	291	4	of	of	ADP
cord-002994-1zjrunzc	291	5	virulence	virulence	NOUN
cord-002994-1zjrunzc	291	6	mostly	mostly	ADV
cord-002994-1zjrunzc	291	7	with	with	ADP
cord-002994-1zjrunzc	291	8	mbfvs	mbfvs	PROPN
cord-002994-1zjrunzc	291	9	,	,	PUNCT
cord-002994-1zjrunzc	291	10	nkvfs	nkvfs	PROPN
cord-002994-1zjrunzc	291	11	and	and	CCONJ
cord-002994-1zjrunzc	291	12	cxfv	cxfv	NOUN
cord-002994-1zjrunzc	291	13	than	than	ADP
cord-002994-1zjrunzc	291	14	with	with	ADP
cord-002994-1zjrunzc	291	15	aefv	aefv	NOUN
cord-002994-1zjrunzc	291	16	showed	show	VERB
cord-002994-1zjrunzc	291	17	that	that	SCONJ
cord-002994-1zjrunzc	291	18	bagv	bagv	NOUN
cord-002994-1zjrunzc	291	19	could	could	AUX
cord-002994-1zjrunzc	291	20	be	be	AUX
cord-002994-1zjrunzc	291	21	more	more	ADV
cord-002994-1zjrunzc	291	22	closely	closely	ADV
cord-002994-1zjrunzc	291	23	related	relate	VERB
cord-002994-1zjrunzc	291	24	to	to	ADP
cord-002994-1zjrunzc	291	25	mbfvs	mbfvs	PROPN
cord-002994-1zjrunzc	291	26	transmitted	transmit	VERB
cord-002994-1zjrunzc	291	27	by	by	ADP
cord-002994-1zjrunzc	291	28	culex	culex	PROPN
cord-002994-1zjrunzc	291	29	mosquitoes	mosquito	NOUN
cord-002994-1zjrunzc	291	30	and	and	CCONJ
cord-002994-1zjrunzc	291	31	could	could	AUX
cord-002994-1zjrunzc	291	32	explain	explain	VERB
cord-002994-1zjrunzc	291	33	frequent	frequent	ADJ
cord-002994-1zjrunzc	291	34	bagv	bagv	NOUN
cord-002994-1zjrunzc	291	35	isolations	isolation	NOUN
cord-002994-1zjrunzc	291	36	mainly	mainly	ADV
cord-002994-1zjrunzc	291	37	from	from	ADP
cord-002994-1zjrunzc	291	38	mosquitoes	mosquito	NOUN
cord-002994-1zjrunzc	291	39	of	of	ADP
cord-002994-1zjrunzc	291	40	culex	culex	PROPN
cord-002994-1zjrunzc	291	41	genus	genus	PROPN
cord-002994-1zjrunzc	291	42	and	and	CCONJ
cord-002994-1zjrunzc	291	43	its	its	PRON
cord-002994-1zjrunzc	291	44	capacity	capacity	NOUN
cord-002994-1zjrunzc	291	45	to	to	PART
cord-002994-1zjrunzc	291	46	infect	infect	VERB
cord-002994-1zjrunzc	291	47	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	291	48	such	such	ADJ
cord-002994-1zjrunzc	291	49	as	as	ADP
cord-002994-1zjrunzc	291	50	wild	wild	ADJ
cord-002994-1zjrunzc	291	51	birds	bird	NOUN
cord-002994-1zjrunzc	292	1	[	[	X
cord-002994-1zjrunzc	292	2	1	1	NUM
cord-002994-1zjrunzc	292	3	,	,	PUNCT
cord-002994-1zjrunzc	292	4	4	4	NUM
cord-002994-1zjrunzc	292	5	,	,	PUNCT
cord-002994-1zjrunzc	292	6	5	5	NUM
cord-002994-1zjrunzc	292	7	,	,	PUNCT
cord-002994-1zjrunzc	292	8	9	9	NUM
cord-002994-1zjrunzc	292	9	,	,	PUNCT
cord-002994-1zjrunzc	292	10	10	10	NUM
cord-002994-1zjrunzc	292	11	]	]	PUNCT
cord-002994-1zjrunzc	292	12	.	.	PUNCT
cord-002994-1zjrunzc	293	1	in	in	ADP
cord-002994-1zjrunzc	293	2	addition	addition	NOUN
cord-002994-1zjrunzc	293	3	,	,	PUNCT
cord-002994-1zjrunzc	293	4	the	the	DET
cord-002994-1zjrunzc	293	5	west	west	PROPN
cord-002994-1zjrunzc	293	6	african	african	PROPN
cord-002994-1zjrunzc	293	7	bagv	bagv	PROPN
cord-002994-1zjrunzc	293	8	isolates	isolate	VERB
cord-002994-1zjrunzc	293	9	characterized	characterize	VERB
cord-002994-1zjrunzc	293	10	in	in	ADP
cord-002994-1zjrunzc	293	11	our	our	PRON
cord-002994-1zjrunzc	293	12	study	study	NOUN
cord-002994-1zjrunzc	293	13	were	be	AUX
cord-002994-1zjrunzc	293	14	mainly	mainly	ADV
cord-002994-1zjrunzc	293	15	isolated	isolate	VERB
cord-002994-1zjrunzc	293	16	from	from	ADP
cord-002994-1zjrunzc	293	17	culex	culex	ADJ
cord-002994-1zjrunzc	293	18	poicilipes	poicilipe	NOUN
cord-002994-1zjrunzc	293	19	and	and	CCONJ
cord-002994-1zjrunzc	293	20	culex	culex	PROPN
cord-002994-1zjrunzc	293	21	neavei	neavei	PROPN
cord-002994-1zjrunzc	293	22	mosquitoes	mosquito	NOUN
cord-002994-1zjrunzc	293	23	which	which	PRON
cord-002994-1zjrunzc	293	24	have	have	AUX
cord-002994-1zjrunzc	293	25	been	be	AUX
cord-002994-1zjrunzc	293	26	reported	report	VERB
cord-002994-1zjrunzc	293	27	as	as	ADP
cord-002994-1zjrunzc	293	28	potential	potential	ADJ
cord-002994-1zjrunzc	293	29	vectors	vector	NOUN
cord-002994-1zjrunzc	293	30	for	for	ADP
cord-002994-1zjrunzc	293	31	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	293	32	such	such	ADJ
cord-002994-1zjrunzc	293	33	as	as	ADP
cord-002994-1zjrunzc	293	34	wnv	wnv	NOUN
cord-002994-1zjrunzc	293	35	[	[	X
cord-002994-1zjrunzc	293	36	63	63	NUM
cord-002994-1zjrunzc	293	37	]	]	PUNCT
cord-002994-1zjrunzc	293	38	.	.	PUNCT
cord-002994-1zjrunzc	294	1	culex	culex	PROPN
cord-002994-1zjrunzc	294	2	neavei	neavei	PROPN
cord-002994-1zjrunzc	294	3	was	be	AUX
cord-002994-1zjrunzc	294	4	also	also	ADV
cord-002994-1zjrunzc	294	5	found	find	VERB
cord-002994-1zjrunzc	294	6	as	as	ADP
cord-002994-1zjrunzc	294	7	a	a	DET
cord-002994-1zjrunzc	294	8	competent	competent	ADJ
cord-002994-1zjrunzc	294	9	vector	vector	NOUN
cord-002994-1zjrunzc	294	10	able	able	ADJ
cord-002994-1zjrunzc	294	11	to	to	PART
cord-002994-1zjrunzc	294	12	transmit	transmit	VERB
cord-002994-1zjrunzc	294	13	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	294	14	such	such	ADJ
cord-002994-1zjrunzc	294	15	as	as	ADP
cord-002994-1zjrunzc	294	16	usuv	usuv	NOUN
cord-002994-1zjrunzc	294	17	and	and	CCONJ
cord-002994-1zjrunzc	294	18	wnv	wnv	NOUN
cord-002994-1zjrunzc	294	19	[	[	PUNCT
cord-002994-1zjrunzc	294	20	64	64	NUM
cord-002994-1zjrunzc	294	21	,	,	PUNCT
cord-002994-1zjrunzc	294	22	65	65	NUM
cord-002994-1zjrunzc	294	23	]	]	PUNCT
cord-002994-1zjrunzc	294	24	.	.	PUNCT
cord-002994-1zjrunzc	295	1	despite	despite	SCONJ
cord-002994-1zjrunzc	295	2	no	no	DET
cord-002994-1zjrunzc	295	3	available	available	ADJ
cord-002994-1zjrunzc	295	4	data	datum	NOUN
cord-002994-1zjrunzc	295	5	on	on	ADP
cord-002994-1zjrunzc	295	6	culex	culex	NOUN
cord-002994-1zjrunzc	295	7	poicilipes	poicilipe	NOUN
cord-002994-1zjrunzc	295	8	competency	competency	NOUN
cord-002994-1zjrunzc	295	9	to	to	PART
cord-002994-1zjrunzc	295	10	transmit	transmit	VERB
cord-002994-1zjrunzc	295	11	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	295	12	,	,	PUNCT
cord-002994-1zjrunzc	295	13	these	these	DET
cord-002994-1zjrunzc	295	14	two	two	NUM
cord-002994-1zjrunzc	295	15	mosquito	mosquito	NOUN
cord-002994-1zjrunzc	295	16	species	specie	NOUN
cord-002994-1zjrunzc	295	17	belonging	belong	VERB
cord-002994-1zjrunzc	295	18	to	to	ADP
cord-002994-1zjrunzc	295	19	culex	culex	PROPN
cord-002994-1zjrunzc	295	20	genus	genus	PROPN
cord-002994-1zjrunzc	295	21	could	could	AUX
cord-002994-1zjrunzc	295	22	play	play	VERB
cord-002994-1zjrunzc	295	23	an	an	DET
cord-002994-1zjrunzc	295	24	important	important	ADJ
cord-002994-1zjrunzc	295	25	role	role	NOUN
cord-002994-1zjrunzc	295	26	in	in	ADP
cord-002994-1zjrunzc	295	27	natural	natural	ADJ
cord-002994-1zjrunzc	295	28	transmission	transmission	NOUN
cord-002994-1zjrunzc	295	29	of	of	ADP
cord-002994-1zjrunzc	295	30	bagv	bagv	PROPN
cord-002994-1zjrunzc	295	31	to	to	ADP
cord-002994-1zjrunzc	295	32	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	295	33	such	such	ADJ
cord-002994-1zjrunzc	295	34	as	as	ADP
cord-002994-1zjrunzc	295	35	wild	wild	ADJ
cord-002994-1zjrunzc	295	36	birds	bird	NOUN
cord-002994-1zjrunzc	295	37	since	since	SCONJ
cord-002994-1zjrunzc	295	38	another	another	DET
cord-002994-1zjrunzc	295	39	member	member	NOUN
cord-002994-1zjrunzc	295	40	of	of	ADP
cord-002994-1zjrunzc	295	41	the	the	DET
cord-002994-1zjrunzc	295	42	culex	culex	PROPN
cord-002994-1zjrunzc	295	43	genus	genus	PROPN
cord-002994-1zjrunzc	295	44	,	,	PUNCT
cord-002994-1zjrunzc	295	45	culex	culex	PROPN
cord-002994-1zjrunzc	295	46	tritaeniorhynchus	tritaeniorhynchus	PROPN
cord-002994-1zjrunzc	295	47	,	,	PUNCT
cord-002994-1zjrunzc	295	48	has	have	AUX
cord-002994-1zjrunzc	295	49	been	be	AUX
cord-002994-1zjrunzc	295	50	found	find	VERB
cord-002994-1zjrunzc	295	51	competent	competent	ADJ
cord-002994-1zjrunzc	295	52	to	to	PART
cord-002994-1zjrunzc	295	53	transmit	transmit	VERB
cord-002994-1zjrunzc	295	54	bagv	bagv	NOUN
cord-002994-1zjrunzc	295	55	to	to	ADP
cord-002994-1zjrunzc	295	56	mice	mice	NOUN
cord-002994-1zjrunzc	295	57	[	[	PUNCT
cord-002994-1zjrunzc	295	58	8	8	NUM
cord-002994-1zjrunzc	295	59	]	]	PUNCT
cord-002994-1zjrunzc	295	60	.	.	PUNCT
cord-002994-1zjrunzc	296	1	the	the	DET
cord-002994-1zjrunzc	296	2	phylogenetically	phylogenetically	ADV
cord-002994-1zjrunzc	296	3	informative	informative	ADJ
cord-002994-1zjrunzc	296	4	sites	site	NOUN
cord-002994-1zjrunzc	296	5	identified	identify	VERB
cord-002994-1zjrunzc	296	6	on	on	ADP
cord-002994-1zjrunzc	296	7	the	the	DET
cord-002994-1zjrunzc	296	8	bagv	bagv	NOUN
cord-002994-1zjrunzc	296	9	genome	genome	NOUN
cord-002994-1zjrunzc	296	10	located	locate	VERB
cord-002994-1zjrunzc	296	11	mainly	mainly	ADV
cord-002994-1zjrunzc	296	12	in	in	ADP
cord-002994-1zjrunzc	296	13	ns3	ns3	NOUN
cord-002994-1zjrunzc	296	14	,	,	PUNCT
cord-002994-1zjrunzc	296	15	ns4b	ns4b	NUM
cord-002994-1zjrunzc	296	16	and	and	CCONJ
cord-002994-1zjrunzc	296	17	ns5	ns5	PROPN
cord-002994-1zjrunzc	296	18	proteins	protein	NOUN
cord-002994-1zjrunzc	296	19	,	,	PUNCT
cord-002994-1zjrunzc	296	20	respectively	respectively	ADV
cord-002994-1zjrunzc	296	21	,	,	PUNCT
cord-002994-1zjrunzc	296	22	could	could	AUX
cord-002994-1zjrunzc	296	23	have	have	VERB
cord-002994-1zjrunzc	296	24	a	a	DET
cord-002994-1zjrunzc	296	25	considerable	considerable	ADJ
cord-002994-1zjrunzc	296	26	impact	impact	NOUN
cord-002994-1zjrunzc	296	27	in	in	ADP
cord-002994-1zjrunzc	296	28	viral	viral	ADJ
cord-002994-1zjrunzc	296	29	fitness	fitness	NOUN
cord-002994-1zjrunzc	296	30	on	on	ADP
cord-002994-1zjrunzc	296	31	host	host	NOUN
cord-002994-1zjrunzc	296	32	for	for	ADP
cord-002994-1zjrunzc	296	33	corresponding	correspond	VERB
cord-002994-1zjrunzc	296	34	west	west	ADJ
cord-002994-1zjrunzc	296	35	african	african	ADJ
cord-002994-1zjrunzc	296	36	isolates	isolate	NOUN
cord-002994-1zjrunzc	296	37	.	.	PUNCT
cord-002994-1zjrunzc	297	1	in	in	ADP
cord-002994-1zjrunzc	297	2	addition	addition	NOUN
cord-002994-1zjrunzc	297	3	,	,	PUNCT
cord-002994-1zjrunzc	297	4	the	the	DET
cord-002994-1zjrunzc	297	5	prediction	prediction	NOUN
cord-002994-1zjrunzc	297	6	of	of	ADP
cord-002994-1zjrunzc	297	7	the	the	DET
cord-002994-1zjrunzc	297	8	n	n	ADV
cord-002994-1zjrunzc	297	9	-	-	ADJ
cord-002994-1zjrunzc	297	10	glycosylated	glycosylated	ADJ
cord-002994-1zjrunzc	297	11	sites	site	NOUN
cord-002994-1zjrunzc	297	12	at	at	ADP
cord-002994-1zjrunzc	297	13	different	different	ADJ
cord-002994-1zjrunzc	297	14	positions	position	NOUN
cord-002994-1zjrunzc	297	15	on	on	ADP
cord-002994-1zjrunzc	297	16	bagv	bagv	NOUN
cord-002994-1zjrunzc	297	17	genome	genome	NOUN
cord-002994-1zjrunzc	297	18	such	such	ADJ
cord-002994-1zjrunzc	297	19	as	as	ADP
cord-002994-1zjrunzc	297	20	asn2333	asn2333	NOUN
cord-002994-1zjrunzc	297	21	in	in	ADP
cord-002994-1zjrunzc	297	22	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	297	23	and	and	CCONJ
cord-002994-1zjrunzc	297	24	the	the	DET
cord-002994-1zjrunzc	297	25	nysi	nysi	NOUN
cord-002994-1zjrunzc	297	26	motif	motif	NOUN
cord-002994-1zjrunzc	297	27	at	at	ADP
cord-002994-1zjrunzc	297	28	153th	153th	PROPN
cord-002994-1zjrunzc	297	29	position	position	NOUN
cord-002994-1zjrunzc	297	30	of	of	ADP
cord-002994-1zjrunzc	297	31	the	the	DET
cord-002994-1zjrunzc	297	32	e	e	PROPN
cord-002994-1zjrunzc	297	33	protein	protein	NOUN
cord-002994-1zjrunzc	297	34	showed	show	VERB
cord-002994-1zjrunzc	297	35	that	that	SCONJ
cord-002994-1zjrunzc	297	36	post	post	ADJ
cord-002994-1zjrunzc	297	37	-	-	ADJ
cord-002994-1zjrunzc	297	38	translational	translational	ADJ
cord-002994-1zjrunzc	297	39	modifications	modification	NOUN
cord-002994-1zjrunzc	297	40	may	may	AUX
cord-002994-1zjrunzc	297	41	influence	influence	VERB
cord-002994-1zjrunzc	297	42	acquisition	acquisition	NOUN
cord-002994-1zjrunzc	297	43	or	or	CCONJ
cord-002994-1zjrunzc	297	44	loss	loss	NOUN
cord-002994-1zjrunzc	297	45	of	of	ADP
cord-002994-1zjrunzc	297	46	capacity	capacity	NOUN
cord-002994-1zjrunzc	297	47	in	in	ADP
cord-002994-1zjrunzc	297	48	mechanisms	mechanism	NOUN
cord-002994-1zjrunzc	297	49	such	such	ADJ
cord-002994-1zjrunzc	297	50	as	as	ADP
cord-002994-1zjrunzc	297	51	pathogenicity	pathogenicity	NOUN
cord-002994-1zjrunzc	297	52	,	,	PUNCT
cord-002994-1zjrunzc	297	53	evasion	evasion	NOUN
cord-002994-1zjrunzc	297	54	of	of	ADP
cord-002994-1zjrunzc	297	55	innate	innate	ADJ
cord-002994-1zjrunzc	297	56	immune	immune	ADJ
cord-002994-1zjrunzc	297	57	pathways	pathway	NOUN
cord-002994-1zjrunzc	297	58	.	.	PUNCT
cord-002994-1zjrunzc	298	1	indeed	indeed	ADV
cord-002994-1zjrunzc	298	2	,	,	PUNCT
cord-002994-1zjrunzc	298	3	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	298	4	ns4b	ns4b	PRON
cord-002994-1zjrunzc	298	5	plays	play	VERB
cord-002994-1zjrunzc	298	6	an	an	DET
cord-002994-1zjrunzc	298	7	important	important	ADJ
cord-002994-1zjrunzc	298	8	role	role	NOUN
cord-002994-1zjrunzc	298	9	in	in	ADP
cord-002994-1zjrunzc	298	10	replication	replication	NOUN
cord-002994-1zjrunzc	298	11	of	of	ADP
cord-002994-1zjrunzc	298	12	viral	viral	ADJ
cord-002994-1zjrunzc	298	13	rna	rna	NOUN
cord-002994-1zjrunzc	298	14	facilitating	facilitate	VERB
cord-002994-1zjrunzc	298	15	the	the	DET
cord-002994-1zjrunzc	298	16	formation	formation	NOUN
cord-002994-1zjrunzc	298	17	of	of	ADP
cord-002994-1zjrunzc	298	18	replication	replication	NOUN
cord-002994-1zjrunzc	298	19	complexes	complex	NOUN
cord-002994-1zjrunzc	298	20	and	and	CCONJ
cord-002994-1zjrunzc	298	21	modulating	modulate	VERB
cord-002994-1zjrunzc	298	22	host	host	NOUN
cord-002994-1zjrunzc	298	23	innate	innate	ADJ
cord-002994-1zjrunzc	298	24	immune	immune	ADJ
cord-002994-1zjrunzc	298	25	response	response	NOUN
cord-002994-1zjrunzc	298	26	such	such	ADJ
cord-002994-1zjrunzc	298	27	as	as	ADP
cord-002994-1zjrunzc	298	28	interferons	interferon	NOUN
cord-002994-1zjrunzc	298	29	,	,	PUNCT
cord-002994-1zjrunzc	298	30	micrornas	microrna	NOUN
cord-002994-1zjrunzc	298	31	and	and	CCONJ
cord-002994-1zjrunzc	298	32	rna	rna	NOUN
cord-002994-1zjrunzc	298	33	interference	interference	NOUN
cord-002994-1zjrunzc	298	34	,	,	PUNCT
cord-002994-1zjrunzc	298	35	formation	formation	NOUN
cord-002994-1zjrunzc	298	36	of	of	ADP
cord-002994-1zjrunzc	298	37	stress	stress	NOUN
cord-002994-1zjrunzc	298	38	granules	granule	NOUN
cord-002994-1zjrunzc	298	39	and	and	CCONJ
cord-002994-1zjrunzc	298	40	the	the	DET
cord-002994-1zjrunzc	298	41	unfolded	unfolded	ADJ
cord-002994-1zjrunzc	298	42	protein	protein	NOUN
cord-002994-1zjrunzc	298	43	responses	response	NOUN
cord-002994-1zjrunzc	298	44	[	[	X
cord-002994-1zjrunzc	298	45	66	66	NUM
cord-002994-1zjrunzc	298	46	]	]	PUNCT
cord-002994-1zjrunzc	298	47	[	[	X
cord-002994-1zjrunzc	298	48	67	67	NUM
cord-002994-1zjrunzc	298	49	]	]	PUNCT
cord-002994-1zjrunzc	298	50	[	[	X
cord-002994-1zjrunzc	298	51	68	68	NUM
cord-002994-1zjrunzc	298	52	]	]	PUNCT
cord-002994-1zjrunzc	298	53	.	.	PUNCT
cord-002994-1zjrunzc	299	1	a	a	DET
cord-002994-1zjrunzc	299	2	previous	previous	ADJ
cord-002994-1zjrunzc	299	3	study	study	NOUN
cord-002994-1zjrunzc	299	4	had	have	AUX
cord-002994-1zjrunzc	299	5	shown	show	VERB
cord-002994-1zjrunzc	299	6	that	that	SCONJ
cord-002994-1zjrunzc	299	7	n	n	NOUN
cord-002994-1zjrunzc	299	8	-	-	NOUN
cord-002994-1zjrunzc	299	9	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	299	10	of	of	ADP
cord-002994-1zjrunzc	299	11	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	299	12	of	of	ADP
cord-002994-1zjrunzc	299	13	denv	denv	PROPN
cord-002994-1zjrunzc	299	14	does	do	AUX
cord-002994-1zjrunzc	299	15	not	not	PART
cord-002994-1zjrunzc	299	16	affect	affect	VERB
cord-002994-1zjrunzc	299	17	the	the	DET
cord-002994-1zjrunzc	299	18	protein	protein	NOUN
cord-002994-1zjrunzc	299	19	stability	stability	NOUN
cord-002994-1zjrunzc	299	20	but	but	CCONJ
cord-002994-1zjrunzc	299	21	causes	cause	VERB
cord-002994-1zjrunzc	299	22	a	a	DET
cord-002994-1zjrunzc	299	23	considerable	considerable	ADJ
cord-002994-1zjrunzc	299	24	reduction	reduction	NOUN
cord-002994-1zjrunzc	299	25	in	in	ADP
cord-002994-1zjrunzc	299	26	efficiency	efficiency	NOUN
cord-002994-1zjrunzc	299	27	of	of	ADP
cord-002994-1zjrunzc	299	28	viral	viral	ADJ
cord-002994-1zjrunzc	299	29	production	production	NOUN
cord-002994-1zjrunzc	299	30	[	[	X
cord-002994-1zjrunzc	299	31	69	69	NUM
cord-002994-1zjrunzc	299	32	]	]	PUNCT
cord-002994-1zjrunzc	299	33	.	.	PUNCT
cord-002994-1zjrunzc	300	1	presence	presence	NOUN
cord-002994-1zjrunzc	300	2	of	of	ADP
cord-002994-1zjrunzc	300	3	a	a	DET
cord-002994-1zjrunzc	300	4	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	300	5	site	site	NOUN
cord-002994-1zjrunzc	300	6	and	and	CCONJ
cord-002994-1zjrunzc	300	7	an	an	DET
cord-002994-1zjrunzc	300	8	informative	informative	ADJ
cord-002994-1zjrunzc	300	9	site	site	NOUN
cord-002994-1zjrunzc	300	10	in	in	ADP
cord-002994-1zjrunzc	300	11	the	the	DET
cord-002994-1zjrunzc	300	12	viral	viral	ADJ
cord-002994-1zjrunzc	300	13	ns4b	ns4b	PRON
cord-002994-1zjrunzc	300	14	protein	protein	NOUN
cord-002994-1zjrunzc	300	15	could	could	AUX
cord-002994-1zjrunzc	300	16	influence	influence	VERB
cord-002994-1zjrunzc	300	17	the	the	DET
cord-002994-1zjrunzc	300	18	efficiency	efficiency	NOUN
cord-002994-1zjrunzc	300	19	of	of	ADP
cord-002994-1zjrunzc	300	20	viral	viral	ADJ
cord-002994-1zjrunzc	300	21	replication	replication	NOUN
cord-002994-1zjrunzc	300	22	and	and	CCONJ
cord-002994-1zjrunzc	300	23	the	the	DET
cord-002994-1zjrunzc	300	24	outer	outer	ADJ
cord-002994-1zjrunzc	300	25	shape	shape	NOUN
cord-002994-1zjrunzc	300	26	of	of	ADP
cord-002994-1zjrunzc	300	27	the	the	DET
cord-002994-1zjrunzc	300	28	virion	virion	NOUN
cord-002994-1zjrunzc	300	29	.	.	PUNCT
cord-002994-1zjrunzc	301	1	the	the	DET
cord-002994-1zjrunzc	301	2	presence	presence	NOUN
cord-002994-1zjrunzc	301	3	of	of	ADP
cord-002994-1zjrunzc	301	4	the	the	DET
cord-002994-1zjrunzc	301	5	n	n	ADV
cord-002994-1zjrunzc	301	6	-	-	PUNCT
cord-002994-1zjrunzc	301	7	linked	link	VERB
cord-002994-1zjrunzc	301	8	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	301	9	motif	motif	NOUN
cord-002994-1zjrunzc	301	10	nys	nys	PROPN
cord-002994-1zjrunzc	301	11	had	have	AUX
cord-002994-1zjrunzc	301	12	been	be	AUX
cord-002994-1zjrunzc	301	13	previously	previously	ADV
cord-002994-1zjrunzc	301	14	reported	report	VERB
cord-002994-1zjrunzc	301	15	at	at	ADP
cord-002994-1zjrunzc	301	16	67/153th	67/153th	NUM
cord-002994-1zjrunzc	301	17	and	and	CCONJ
cord-002994-1zjrunzc	301	18	154th	154th	NOUN
cord-002994-1zjrunzc	301	19	on	on	ADP
cord-002994-1zjrunzc	301	20	the	the	DET
cord-002994-1zjrunzc	301	21	e	e	NOUN
cord-002994-1zjrunzc	301	22	protein	protein	NOUN
cord-002994-1zjrunzc	301	23	of	of	ADP
cord-002994-1zjrunzc	301	24	denv	denv	NOUN
cord-002994-1zjrunzc	301	25	and	and	CCONJ
cord-002994-1zjrunzc	301	26	wnv	wnv	PROPN
cord-002994-1zjrunzc	301	27	(	(	PUNCT
cord-002994-1zjrunzc	301	28	lineage	lineage	NOUN
cord-002994-1zjrunzc	301	29	1	1	NUM
cord-002994-1zjrunzc	301	30	strains	strain	NOUN
cord-002994-1zjrunzc	301	31	and	and	CCONJ
cord-002994-1zjrunzc	301	32	some	some	DET
cord-002994-1zjrunzc	301	33	neuroinvasive	neuroinvasive	ADJ
cord-002994-1zjrunzc	301	34	lineage	lineage	NOUN
cord-002994-1zjrunzc	301	35	2	2	NUM
cord-002994-1zjrunzc	301	36	strains	strain	NOUN
cord-002994-1zjrunzc	301	37	)	)	PUNCT
cord-002994-1zjrunzc	301	38	,	,	PUNCT
cord-002994-1zjrunzc	301	39	respectively	respectively	ADV
cord-002994-1zjrunzc	301	40	,	,	PUNCT
cord-002994-1zjrunzc	301	41	involving	involve	VERB
cord-002994-1zjrunzc	301	42	in	in	ADP
cord-002994-1zjrunzc	301	43	receptor	receptor	NOUN
cord-002994-1zjrunzc	301	44	binding	binding	ADJ
cord-002994-1zjrunzc	301	45	,	,	PUNCT
cord-002994-1zjrunzc	301	46	viral	viral	ADJ
cord-002994-1zjrunzc	301	47	morphogenesis	morphogenesis	NOUN
cord-002994-1zjrunzc	301	48	,	,	PUNCT
cord-002994-1zjrunzc	301	49	viral	viral	ADJ
cord-002994-1zjrunzc	301	50	infectivity	infectivity	NOUN
cord-002994-1zjrunzc	301	51	,	,	PUNCT
cord-002994-1zjrunzc	301	52	and	and	CCONJ
cord-002994-1zjrunzc	301	53	tropism	tropism	NOUN
cord-002994-1zjrunzc	302	1	[	[	X
cord-002994-1zjrunzc	302	2	70	70	NUM
cord-002994-1zjrunzc	302	3	]	]	PUNCT
cord-002994-1zjrunzc	302	4	[	[	X
cord-002994-1zjrunzc	302	5	71	71	NUM
cord-002994-1zjrunzc	302	6	]	]	PUNCT
cord-002994-1zjrunzc	303	1	[	[	X
cord-002994-1zjrunzc	303	2	72	72	NUM
cord-002994-1zjrunzc	303	3	]	]	PUNCT
cord-002994-1zjrunzc	303	4	[	[	X
cord-002994-1zjrunzc	303	5	73	73	NUM
cord-002994-1zjrunzc	303	6	]	]	PUNCT
cord-002994-1zjrunzc	304	1	[	[	X
cord-002994-1zjrunzc	304	2	74	74	NUM
cord-002994-1zjrunzc	304	3	]	]	PUNCT
cord-002994-1zjrunzc	304	4	.	.	PUNCT
cord-002994-1zjrunzc	305	1	since	since	SCONJ
cord-002994-1zjrunzc	305	2	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	305	3	is	be	AUX
cord-002994-1zjrunzc	305	4	a	a	DET
cord-002994-1zjrunzc	305	5	means	means	NOUN
cord-002994-1zjrunzc	305	6	of	of	ADP
cord-002994-1zjrunzc	305	7	evasion	evasion	NOUN
cord-002994-1zjrunzc	305	8	to	to	PART
cord-002994-1zjrunzc	305	9	immune	immune	VERB
cord-002994-1zjrunzc	305	10	recognition	recognition	NOUN
cord-002994-1zjrunzc	305	11	within	within	ADP
cord-002994-1zjrunzc	305	12	the	the	DET
cord-002994-1zjrunzc	305	13	host	host	NOUN
cord-002994-1zjrunzc	305	14	by	by	ADP
cord-002994-1zjrunzc	305	15	masking	mask	VERB
cord-002994-1zjrunzc	305	16	particular	particular	ADJ
cord-002994-1zjrunzc	305	17	antigenic	antigenic	ADJ
cord-002994-1zjrunzc	305	18	sites	site	NOUN
cord-002994-1zjrunzc	305	19	from	from	ADP
cord-002994-1zjrunzc	305	20	recognition	recognition	NOUN
cord-002994-1zjrunzc	305	21	by	by	ADP
cord-002994-1zjrunzc	305	22	neutralizing	neutralize	VERB
cord-002994-1zjrunzc	305	23	antibodies	antibody	NOUN
cord-002994-1zjrunzc	305	24	,	,	PUNCT
cord-002994-1zjrunzc	305	25	it	it	PRON
cord-002994-1zjrunzc	305	26	could	could	AUX
cord-002994-1zjrunzc	305	27	increase	increase	VERB
cord-002994-1zjrunzc	305	28	the	the	DET
cord-002994-1zjrunzc	305	29	diversity	diversity	NOUN
cord-002994-1zjrunzc	305	30	of	of	ADP
cord-002994-1zjrunzc	305	31	the	the	DET
cord-002994-1zjrunzc	305	32	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	305	33	on	on	ADP
cord-002994-1zjrunzc	305	34	viral	viral	ADJ
cord-002994-1zjrunzc	305	35	proteins	protein	NOUN
cord-002994-1zjrunzc	305	36	[	[	PUNCT
cord-002994-1zjrunzc	305	37	75	75	NUM
cord-002994-1zjrunzc	305	38	,	,	PUNCT
cord-002994-1zjrunzc	305	39	76	76	NUM
cord-002994-1zjrunzc	305	40	]	]	PUNCT
cord-002994-1zjrunzc	305	41	.	.	PUNCT
cord-002994-1zjrunzc	306	1	nevertheless	nevertheless	ADV
cord-002994-1zjrunzc	306	2	,	,	PUNCT
cord-002994-1zjrunzc	306	3	it	it	PRON
cord-002994-1zjrunzc	306	4	could	could	AUX
cord-002994-1zjrunzc	306	5	be	be	AUX
cord-002994-1zjrunzc	306	6	important	important	ADJ
cord-002994-1zjrunzc	306	7	in	in	ADP
cord-002994-1zjrunzc	306	8	future	future	ADJ
cord-002994-1zjrunzc	306	9	studies	study	NOUN
cord-002994-1zjrunzc	306	10	to	to	PART
cord-002994-1zjrunzc	306	11	determine	determine	VERB
cord-002994-1zjrunzc	306	12	whether	whether	SCONJ
cord-002994-1zjrunzc	306	13	the	the	DET
cord-002994-1zjrunzc	306	14	predicted	predict	VERB
cord-002994-1zjrunzc	306	15	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	306	16	sites	site	NOUN
cord-002994-1zjrunzc	306	17	are	be	AUX
cord-002994-1zjrunzc	306	18	really	really	ADV
cord-002994-1zjrunzc	306	19	used	use	VERB
cord-002994-1zjrunzc	306	20	(	(	PUNCT
cord-002994-1zjrunzc	306	21	asparagine	asparagine	NOUN
cord-002994-1zjrunzc	306	22	-	-	PUNCT
cord-002994-1zjrunzc	306	23	linked	link	VERB
cord-002994-1zjrunzc	306	24	)	)	PUNCT
cord-002994-1zjrunzc	306	25	using	use	VERB
cord-002994-1zjrunzc	306	26	specific	specific	ADJ
cord-002994-1zjrunzc	306	27	enzymatic	enzymatic	ADJ
cord-002994-1zjrunzc	306	28	digestion	digestion	NOUN
cord-002994-1zjrunzc	306	29	by	by	ADP
cord-002994-1zjrunzc	306	30	endo	endo	PROPN
cord-002994-1zjrunzc	306	31	h	h	PROPN
cord-002994-1zjrunzc	306	32	and	and	CCONJ
cord-002994-1zjrunzc	306	33	peptide	peptide	NOUN
cord-002994-1zjrunzc	306	34	n	n	NOUN
cord-002994-1zjrunzc	306	35	-	-	NOUN
cord-002994-1zjrunzc	306	36	glycosidase	glycosidase	NOUN
cord-002994-1zjrunzc	306	37	(	(	PUNCT
cord-002994-1zjrunzc	306	38	pngase	pngase	PROPN
cord-002994-1zjrunzc	306	39	f	f	X
cord-002994-1zjrunzc	306	40	)	)	PUNCT
cord-002994-1zjrunzc	307	1	[	[	PUNCT
cord-002994-1zjrunzc	307	2	77	77	NUM
cord-002994-1zjrunzc	307	3	]	]	PUNCT
cord-002994-1zjrunzc	307	4	.	.	PUNCT
cord-002994-1zjrunzc	308	1	our	our	PRON
cord-002994-1zjrunzc	308	2	data	datum	NOUN
cord-002994-1zjrunzc	308	3	suggest	suggest	VERB
cord-002994-1zjrunzc	308	4	the	the	DET
cord-002994-1zjrunzc	308	5	ability	ability	NOUN
cord-002994-1zjrunzc	308	6	of	of	ADP
cord-002994-1zjrunzc	308	7	bagv	bagv	NOUN
cord-002994-1zjrunzc	308	8	to	to	PART
cord-002994-1zjrunzc	308	9	develop	develop	VERB
cord-002994-1zjrunzc	308	10	phenotypically	phenotypically	ADV
cord-002994-1zjrunzc	308	11	important	important	ADJ
cord-002994-1zjrunzc	308	12	variations	variation	NOUN
cord-002994-1zjrunzc	308	13	and	and	CCONJ
cord-002994-1zjrunzc	308	14	potentially	potentially	ADV
cord-002994-1zjrunzc	308	15	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	308	16	to	to	ADP
cord-002994-1zjrunzc	308	17	new	new	ADJ
cord-002994-1zjrunzc	308	18	vertebrate	vertebrate	ADJ
cord-002994-1zjrunzc	308	19	hosts	host	NOUN
cord-002994-1zjrunzc	308	20	such	such	ADJ
cord-002994-1zjrunzc	308	21	as	as	ADP
cord-002994-1zjrunzc	308	22	humans	human	NOUN
cord-002994-1zjrunzc	308	23	.	.	PUNCT
cord-002994-1zjrunzc	309	1	however	however	ADV
cord-002994-1zjrunzc	309	2	,	,	PUNCT
cord-002994-1zjrunzc	309	3	to	to	PART
cord-002994-1zjrunzc	309	4	understand	understand	VERB
cord-002994-1zjrunzc	309	5	better	well	ADV
cord-002994-1zjrunzc	309	6	the	the	DET
cord-002994-1zjrunzc	309	7	impact	impact	NOUN
cord-002994-1zjrunzc	309	8	of	of	ADP
cord-002994-1zjrunzc	309	9	variation	variation	NOUN
cord-002994-1zjrunzc	309	10	on	on	ADP
cord-002994-1zjrunzc	309	11	these	these	DET
cord-002994-1zjrunzc	309	12	predicted	predict	VERB
cord-002994-1zjrunzc	309	13	n	n	NOUN
cord-002994-1zjrunzc	309	14	-	-	PUNCT
cord-002994-1zjrunzc	309	15	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	309	16	sites	site	NOUN
cord-002994-1zjrunzc	309	17	and	and	CCONJ
cord-002994-1zjrunzc	309	18	the	the	DET
cord-002994-1zjrunzc	309	19	identified	identify	VERB
cord-002994-1zjrunzc	309	20	phylogenetically	phylogenetically	ADV
cord-002994-1zjrunzc	309	21	important	important	ADJ
cord-002994-1zjrunzc	309	22	variations	variation	NOUN
cord-002994-1zjrunzc	309	23	would	would	AUX
cord-002994-1zjrunzc	309	24	require	require	VERB
cord-002994-1zjrunzc	309	25	in	in	X
cord-002994-1zjrunzc	309	26	vitro	vitro	X
cord-002994-1zjrunzc	309	27	studies	study	NOUN
cord-002994-1zjrunzc	309	28	with	with	ADP
cord-002994-1zjrunzc	309	29	reverse	reverse	NOUN
cord-002994-1zjrunzc	309	30	genetically	genetically	ADV
cord-002994-1zjrunzc	309	31	engineered	engineer	VERB
cord-002994-1zjrunzc	309	32	infectious	infectious	ADJ
cord-002994-1zjrunzc	309	33	clones	clone	NOUN
cord-002994-1zjrunzc	309	34	on	on	ADP
cord-002994-1zjrunzc	309	35	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	309	36	or	or	CCONJ
cord-002994-1zjrunzc	309	37	mammalian	mammalian	ADJ
cord-002994-1zjrunzc	309	38	cell	cell	NOUN
cord-002994-1zjrunzc	309	39	lines	line	NOUN
cord-002994-1zjrunzc	309	40	and	and	CCONJ
cord-002994-1zjrunzc	309	41	in	in	ADP
cord-002994-1zjrunzc	309	42	vivo	vivo	ADJ
cord-002994-1zjrunzc	309	43	experiments	experiment	NOUN
cord-002994-1zjrunzc	309	44	in	in	ADP
cord-002994-1zjrunzc	309	45	mosquitoes	mosquito	NOUN
cord-002994-1zjrunzc	309	46	or	or	CCONJ
cord-002994-1zjrunzc	309	47	in	in	ADP
cord-002994-1zjrunzc	309	48	animal	animal	NOUN
cord-002994-1zjrunzc	309	49	models	model	NOUN
cord-002994-1zjrunzc	309	50	like	like	ADP
cord-002994-1zjrunzc	309	51	mouse	mouse	NOUN
cord-002994-1zjrunzc	309	52	[	[	PUNCT
cord-002994-1zjrunzc	309	53	78	78	NUM
cord-002994-1zjrunzc	309	54	,	,	PUNCT
cord-002994-1zjrunzc	309	55	79	79	NUM
cord-002994-1zjrunzc	309	56	]	]	PUNCT
cord-002994-1zjrunzc	309	57	.	.	PUNCT
cord-002994-1zjrunzc	310	1	however	however	ADV
cord-002994-1zjrunzc	310	2	,	,	PUNCT
cord-002994-1zjrunzc	310	3	antibodies	antibody	NOUN
cord-002994-1zjrunzc	310	4	against	against	ADP
cord-002994-1zjrunzc	310	5	bagv	bagv	NOUN
cord-002994-1zjrunzc	310	6	proteins	protein	NOUN
cord-002994-1zjrunzc	310	7	or	or	CCONJ
cord-002994-1zjrunzc	310	8	infectious	infectious	ADJ
cord-002994-1zjrunzc	310	9	clone	clone	NOUN
cord-002994-1zjrunzc	310	10	are	be	AUX
cord-002994-1zjrunzc	310	11	currently	currently	ADV
cord-002994-1zjrunzc	310	12	not	not	PART
cord-002994-1zjrunzc	310	13	available	available	ADJ
cord-002994-1zjrunzc	310	14	for	for	ADP
cord-002994-1zjrunzc	310	15	bagv	bagv	NOUN
cord-002994-1zjrunzc	310	16	.	.	PUNCT
cord-002994-1zjrunzc	311	1	the	the	DET
cord-002994-1zjrunzc	311	2	identification	identification	NOUN
cord-002994-1zjrunzc	311	3	of	of	ADP
cord-002994-1zjrunzc	311	4	natural	natural	ADJ
cord-002994-1zjrunzc	311	5	recombination	recombination	NOUN
cord-002994-1zjrunzc	311	6	events	event	NOUN
cord-002994-1zjrunzc	311	7	between	between	ADP
cord-002994-1zjrunzc	311	8	virus	virus	NOUN
cord-002994-1zjrunzc	311	9	isolates	isolate	NOUN
cord-002994-1zjrunzc	311	10	is	be	AUX
cord-002994-1zjrunzc	311	11	important	important	ADJ
cord-002994-1zjrunzc	311	12	for	for	ADP
cord-002994-1zjrunzc	311	13	our	our	PRON
cord-002994-1zjrunzc	311	14	understanding	understanding	NOUN
cord-002994-1zjrunzc	311	15	of	of	ADP
cord-002994-1zjrunzc	311	16	virus	virus	NOUN
cord-002994-1zjrunzc	311	17	evolution	evolution	NOUN
cord-002994-1zjrunzc	311	18	.	.	PUNCT
cord-002994-1zjrunzc	312	1	in	in	ADP
cord-002994-1zjrunzc	312	2	our	our	PRON
cord-002994-1zjrunzc	312	3	study	study	NOUN
cord-002994-1zjrunzc	312	4	,	,	PUNCT
cord-002994-1zjrunzc	312	5	we	we	PRON
cord-002994-1zjrunzc	312	6	identified	identify	VERB
cord-002994-1zjrunzc	312	7	a	a	DET
cord-002994-1zjrunzc	312	8	recombination	recombination	NOUN
cord-002994-1zjrunzc	312	9	event	event	NOUN
cord-002994-1zjrunzc	312	10	in	in	ADP
cord-002994-1zjrunzc	312	11	the	the	DET
cord-002994-1zjrunzc	312	12	e	e	PROPN
cord-002994-1zjrunzc	312	13	protein	protein	NOUN
cord-002994-1zjrunzc	312	14	bagv	bagv	PROPN
cord-002994-1zjrunzc	312	15	.	.	PUNCT
cord-002994-1zjrunzc	313	1	recombination	recombination	NOUN
cord-002994-1zjrunzc	313	2	was	be	AUX
cord-002994-1zjrunzc	313	3	documented	document	VERB
cord-002994-1zjrunzc	313	4	in	in	ADP
cord-002994-1zjrunzc	313	5	other	other	ADJ
cord-002994-1zjrunzc	313	6	members	member	NOUN
cord-002994-1zjrunzc	313	7	of	of	ADP
cord-002994-1zjrunzc	313	8	the	the	DET
cord-002994-1zjrunzc	313	9	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	313	10	-	-	PUNCT
cord-002994-1zjrunzc	313	11	borne	bear	VERB
cord-002994-1zjrunzc	313	12	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	313	13	group	group	NOUN
cord-002994-1zjrunzc	314	1	[	[	X
cord-002994-1zjrunzc	314	2	80	80	NUM
cord-002994-1zjrunzc	314	3	,	,	PUNCT
cord-002994-1zjrunzc	314	4	81	81	NUM
cord-002994-1zjrunzc	314	5	]	]	PUNCT
cord-002994-1zjrunzc	314	6	,	,	PUNCT
cord-002994-1zjrunzc	314	7	but	but	CCONJ
cord-002994-1zjrunzc	314	8	had	have	AUX
cord-002994-1zjrunzc	314	9	not	not	PART
cord-002994-1zjrunzc	314	10	yet	yet	ADV
cord-002994-1zjrunzc	314	11	been	be	AUX
cord-002994-1zjrunzc	314	12	demonstrated	demonstrate	VERB
cord-002994-1zjrunzc	314	13	to	to	PART
cord-002994-1zjrunzc	314	14	occur	occur	VERB
cord-002994-1zjrunzc	314	15	in	in	ADP
cord-002994-1zjrunzc	314	16	bagv	bagv	PROPN
cord-002994-1zjrunzc	314	17	.	.	PUNCT
cord-002994-1zjrunzc	315	1	identification	identification	NOUN
cord-002994-1zjrunzc	315	2	of	of	ADP
cord-002994-1zjrunzc	315	3	recombination	recombination	NOUN
cord-002994-1zjrunzc	315	4	breakpoints	breakpoint	NOUN
cord-002994-1zjrunzc	315	5	and	and	CCONJ
cord-002994-1zjrunzc	315	6	the	the	DET
cord-002994-1zjrunzc	315	7	graphical	graphical	ADJ
cord-002994-1zjrunzc	315	8	detection	detection	NOUN
cord-002994-1zjrunzc	315	9	of	of	ADP
cord-002994-1zjrunzc	315	10	conflicting	conflict	VERB
cord-002994-1zjrunzc	315	11	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	315	12	signals	signal	NOUN
cord-002994-1zjrunzc	315	13	gave	give	VERB
cord-002994-1zjrunzc	315	14	confirmation	confirmation	NOUN
cord-002994-1zjrunzc	315	15	of	of	ADP
cord-002994-1zjrunzc	315	16	this	this	DET
cord-002994-1zjrunzc	315	17	recombination	recombination	NOUN
cord-002994-1zjrunzc	315	18	event	event	NOUN
cord-002994-1zjrunzc	315	19	in	in	ADP
cord-002994-1zjrunzc	315	20	e	e	PROPN
cord-002994-1zjrunzc	315	21	protein	protein	NOUN
cord-002994-1zjrunzc	315	22	of	of	ADP
cord-002994-1zjrunzc	315	23	the	the	DET
cord-002994-1zjrunzc	315	24	senegalese	senegalese	PROPN
cord-002994-1zjrunzc	315	25	isolate	isolate	VERB
cord-002994-1zjrunzc	315	26	ard54139_dakar	ard54139_dakar	PROPN
cord-002994-1zjrunzc	315	27	-	-	PUNCT
cord-002994-1zjrunzc	315	28	bango_sen_1989	bango_sen_1989	ADP
cord-002994-1zjrunzc	315	29	as	as	SCONJ
cord-002994-1zjrunzc	315	30	previously	previously	ADV
cord-002994-1zjrunzc	315	31	described	describe	VERB
cord-002994-1zjrunzc	315	32	for	for	ADP
cord-002994-1zjrunzc	315	33	zikv	zikv	PROPN
cord-002994-1zjrunzc	316	1	[	[	PUNCT
cord-002994-1zjrunzc	316	2	74	74	NUM
cord-002994-1zjrunzc	316	3	,	,	PUNCT
cord-002994-1zjrunzc	316	4	82	82	NUM
cord-002994-1zjrunzc	316	5	]	]	PUNCT
cord-002994-1zjrunzc	316	6	.	.	PUNCT
cord-002994-1zjrunzc	317	1	nevertheless	nevertheless	ADV
cord-002994-1zjrunzc	317	2	,	,	PUNCT
cord-002994-1zjrunzc	317	3	the	the	DET
cord-002994-1zjrunzc	317	4	precise	precise	ADJ
cord-002994-1zjrunzc	317	5	molecular	molecular	ADJ
cord-002994-1zjrunzc	317	6	mechanisms	mechanism	NOUN
cord-002994-1zjrunzc	317	7	of	of	ADP
cord-002994-1zjrunzc	317	8	the	the	DET
cord-002994-1zjrunzc	317	9	template	template	NOUN
cord-002994-1zjrunzc	317	10	switches	switch	NOUN
cord-002994-1zjrunzc	317	11	are	be	AUX
cord-002994-1zjrunzc	317	12	unknown	unknown	ADJ
cord-002994-1zjrunzc	317	13	.	.	PUNCT
cord-002994-1zjrunzc	318	1	the	the	DET
cord-002994-1zjrunzc	318	2	e	e	PROPN
cord-002994-1zjrunzc	318	3	protein	protein	NOUN
cord-002994-1zjrunzc	318	4	is	be	AUX
cord-002994-1zjrunzc	318	5	highly	highly	ADV
cord-002994-1zjrunzc	318	6	important	important	ADJ
cord-002994-1zjrunzc	318	7	because	because	SCONJ
cord-002994-1zjrunzc	318	8	it	it	PRON
cord-002994-1zjrunzc	318	9	encodes	encode	VERB
cord-002994-1zjrunzc	318	10	the	the	DET
cord-002994-1zjrunzc	318	11	most	most	ADV
cord-002994-1zjrunzc	318	12	important	important	ADJ
cord-002994-1zjrunzc	318	13	antigen	antigen	NOUN
cord-002994-1zjrunzc	318	14	with	with	ADP
cord-002994-1zjrunzc	318	15	regards	regard	NOUN
cord-002994-1zjrunzc	318	16	to	to	ADP
cord-002994-1zjrunzc	318	17	virus	virus	NOUN
cord-002994-1zjrunzc	318	18	biology	biology	NOUN
cord-002994-1zjrunzc	318	19	and	and	CCONJ
cord-002994-1zjrunzc	318	20	humoral	humoral	ADJ
cord-002994-1zjrunzc	318	21	immunity	immunity	NOUN
cord-002994-1zjrunzc	318	22	.	.	PUNCT
cord-002994-1zjrunzc	319	1	therefore	therefore	ADV
cord-002994-1zjrunzc	319	2	,	,	PUNCT
cord-002994-1zjrunzc	319	3	large	large	ADJ
cord-002994-1zjrunzc	319	4	-	-	PUNCT
cord-002994-1zjrunzc	319	5	scale	scale	NOUN
cord-002994-1zjrunzc	319	6	genetic	genetic	ADJ
cord-002994-1zjrunzc	319	7	changes	change	NOUN
cord-002994-1zjrunzc	319	8	in	in	ADP
cord-002994-1zjrunzc	319	9	this	this	DET
cord-002994-1zjrunzc	319	10	region	region	NOUN
cord-002994-1zjrunzc	319	11	,	,	PUNCT
cord-002994-1zjrunzc	319	12	as	as	SCONJ
cord-002994-1zjrunzc	319	13	might	might	AUX
cord-002994-1zjrunzc	319	14	be	be	AUX
cord-002994-1zjrunzc	319	15	brought	bring	VERB
cord-002994-1zjrunzc	319	16	about	about	ADP
cord-002994-1zjrunzc	319	17	by	by	ADP
cord-002994-1zjrunzc	319	18	recombination	recombination	NOUN
cord-002994-1zjrunzc	319	19	,	,	PUNCT
cord-002994-1zjrunzc	319	20	could	could	AUX
cord-002994-1zjrunzc	319	21	have	have	VERB
cord-002994-1zjrunzc	319	22	significant	significant	ADJ
cord-002994-1zjrunzc	319	23	impact	impact	NOUN
cord-002994-1zjrunzc	319	24	on	on	ADP
cord-002994-1zjrunzc	319	25	virus	virus	NOUN
cord-002994-1zjrunzc	319	26	phenotype	phenotype	NOUN
cord-002994-1zjrunzc	319	27	[	[	X
cord-002994-1zjrunzc	319	28	44	44	NUM
cord-002994-1zjrunzc	319	29	]	]	PUNCT
cord-002994-1zjrunzc	319	30	.	.	PUNCT
cord-002994-1zjrunzc	320	1	the	the	DET
cord-002994-1zjrunzc	320	2	estimation	estimation	NOUN
cord-002994-1zjrunzc	320	3	of	of	ADP
cord-002994-1zjrunzc	320	4	the	the	DET
cord-002994-1zjrunzc	320	5	selection	selection	NOUN
cord-002994-1zjrunzc	320	6	pressures	pressure	NOUN
cord-002994-1zjrunzc	320	7	acting	act	VERB
cord-002994-1zjrunzc	320	8	on	on	ADP
cord-002994-1zjrunzc	320	9	each	each	DET
cord-002994-1zjrunzc	320	10	protein	protein	NOUN
cord-002994-1zjrunzc	320	11	of	of	ADP
cord-002994-1zjrunzc	320	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	320	13	demonstrated	demonstrate	VERB
cord-002994-1zjrunzc	320	14	episodes	episode	NOUN
cord-002994-1zjrunzc	320	15	of	of	ADP
cord-002994-1zjrunzc	320	16	strong	strong	ADJ
cord-002994-1zjrunzc	320	17	negative	negative	ADJ
cord-002994-1zjrunzc	320	18	selection	selection	NOUN
cord-002994-1zjrunzc	320	19	in	in	ADP
cord-002994-1zjrunzc	320	20	functionally	functionally	ADV
cord-002994-1zjrunzc	320	21	important	important	ADJ
cord-002994-1zjrunzc	320	22	proteins	protein	NOUN
cord-002994-1zjrunzc	320	23	.	.	PUNCT
cord-002994-1zjrunzc	321	1	these	these	DET
cord-002994-1zjrunzc	321	2	results	result	NOUN
cord-002994-1zjrunzc	321	3	suggested	suggest	VERB
cord-002994-1zjrunzc	321	4	frequent	frequent	ADJ
cord-002994-1zjrunzc	321	5	purging	purging	NOUN
cord-002994-1zjrunzc	321	6	of	of	ADP
cord-002994-1zjrunzc	321	7	deleterious	deleterious	ADJ
cord-002994-1zjrunzc	321	8	polymorphisms	polymorphism	NOUN
cord-002994-1zjrunzc	321	9	in	in	ADP
cord-002994-1zjrunzc	321	10	the	the	DET
cord-002994-1zjrunzc	321	11	bagv	bagv	NOUN
cord-002994-1zjrunzc	321	12	genome	genome	NOUN
cord-002994-1zjrunzc	321	13	that	that	PRON
cord-002994-1zjrunzc	321	14	could	could	AUX
cord-002994-1zjrunzc	321	15	be	be	AUX
cord-002994-1zjrunzc	321	16	associated	associate	VERB
cord-002994-1zjrunzc	321	17	with	with	ADP
cord-002994-1zjrunzc	321	18	accumulation	accumulation	NOUN
cord-002994-1zjrunzc	321	19	of	of	ADP
cord-002994-1zjrunzc	321	20	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	321	21	mutations	mutation	NOUN
cord-002994-1zjrunzc	321	22	during	during	ADP
cord-002994-1zjrunzc	321	23	bagv	bagv	PROPN
cord-002994-1zjrunzc	321	24	transmission	transmission	PROPN
cord-002994-1zjrunzc	321	25	[	[	PUNCT
cord-002994-1zjrunzc	321	26	83	83	NUM
cord-002994-1zjrunzc	321	27	]	]	PUNCT
cord-002994-1zjrunzc	321	28	.	.	PUNCT
cord-002994-1zjrunzc	322	1	however	however	ADV
cord-002994-1zjrunzc	322	2	,	,	PUNCT
cord-002994-1zjrunzc	322	3	location	location	NOUN
cord-002994-1zjrunzc	322	4	of	of	ADP
cord-002994-1zjrunzc	322	5	more	more	ADV
cord-002994-1zjrunzc	322	6	significant	significant	ADJ
cord-002994-1zjrunzc	322	7	episodes	episode	NOUN
cord-002994-1zjrunzc	322	8	of	of	ADP
cord-002994-1zjrunzc	322	9	positive	positive	ADJ
cord-002994-1zjrunzc	322	10	selection	selection	NOUN
cord-002994-1zjrunzc	322	11	in	in	ADP
cord-002994-1zjrunzc	322	12	the	the	DET
cord-002994-1zjrunzc	322	13	e	e	PROPN
cord-002994-1zjrunzc	322	14	,	,	PUNCT
cord-002994-1zjrunzc	322	15	ns1	ns1	PROPN
cord-002994-1zjrunzc	322	16	and	and	CCONJ
cord-002994-1zjrunzc	322	17	ns5	ns5	PROPN
cord-002994-1zjrunzc	322	18	proteins	protein	NOUN
cord-002994-1zjrunzc	322	19	indicated	indicate	VERB
cord-002994-1zjrunzc	322	20	that	that	SCONJ
cord-002994-1zjrunzc	322	21	they	they	PRON
cord-002994-1zjrunzc	322	22	could	could	AUX
cord-002994-1zjrunzc	322	23	represent	represent	VERB
cord-002994-1zjrunzc	322	24	preferential	preferential	ADJ
cord-002994-1zjrunzc	322	25	selection	selection	NOUN
cord-002994-1zjrunzc	322	26	targets	target	NOUN
cord-002994-1zjrunzc	322	27	during	during	ADP
cord-002994-1zjrunzc	322	28	bagv	bagv	PROPN
cord-002994-1zjrunzc	322	29	evolution	evolution	PROPN
cord-002994-1zjrunzc	322	30	[	[	PUNCT
cord-002994-1zjrunzc	322	31	84	84	NUM
cord-002994-1zjrunzc	322	32	]	]	PUNCT
cord-002994-1zjrunzc	322	33	.	.	PUNCT
cord-002994-1zjrunzc	323	1	indeed	indeed	ADV
cord-002994-1zjrunzc	323	2	,	,	PUNCT
cord-002994-1zjrunzc	323	3	the	the	DET
cord-002994-1zjrunzc	323	4	e	e	NOUN
cord-002994-1zjrunzc	323	5	protein	protein	NOUN
cord-002994-1zjrunzc	323	6	of	of	ADP
cord-002994-1zjrunzc	323	7	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	323	8	plays	play	VERB
cord-002994-1zjrunzc	323	9	a	a	DET
cord-002994-1zjrunzc	323	10	crucial	crucial	ADJ
cord-002994-1zjrunzc	323	11	role	role	NOUN
cord-002994-1zjrunzc	323	12	in	in	ADP
cord-002994-1zjrunzc	323	13	early	early	ADJ
cord-002994-1zjrunzc	323	14	steps	step	NOUN
cord-002994-1zjrunzc	323	15	of	of	ADP
cord-002994-1zjrunzc	323	16	host	host	NOUN
cord-002994-1zjrunzc	323	17	cell	cell	NOUN
cord-002994-1zjrunzc	323	18	binding	bind	VERB
cord-002994-1zjrunzc	323	19	and	and	CCONJ
cord-002994-1zjrunzc	323	20	viral	viral	ADJ
cord-002994-1zjrunzc	323	21	entry	entry	NOUN
cord-002994-1zjrunzc	323	22	and	and	CCONJ
cord-002994-1zjrunzc	323	23	represents	represent	VERB
cord-002994-1zjrunzc	323	24	a	a	DET
cord-002994-1zjrunzc	323	25	main	main	ADJ
cord-002994-1zjrunzc	323	26	target	target	NOUN
cord-002994-1zjrunzc	323	27	for	for	ADP
cord-002994-1zjrunzc	323	28	immune	immune	ADJ
cord-002994-1zjrunzc	323	29	responses	response	NOUN
cord-002994-1zjrunzc	323	30	influencing	influence	VERB
cord-002994-1zjrunzc	323	31	antigenic	antigenic	ADJ
cord-002994-1zjrunzc	323	32	response	response	NOUN
cord-002994-1zjrunzc	323	33	and	and	CCONJ
cord-002994-1zjrunzc	323	34	positive	positive	ADJ
cord-002994-1zjrunzc	323	35	selection	selection	NOUN
cord-002994-1zjrunzc	323	36	on	on	ADP
cord-002994-1zjrunzc	323	37	the	the	DET
cord-002994-1zjrunzc	323	38	e	e	NOUN
cord-002994-1zjrunzc	323	39	protein	protein	NOUN
cord-002994-1zjrunzc	323	40	is	be	AUX
cord-002994-1zjrunzc	323	41	a	a	DET
cord-002994-1zjrunzc	323	42	hallmark	hallmark	NOUN
cord-002994-1zjrunzc	323	43	of	of	ADP
cord-002994-1zjrunzc	323	44	the	the	DET
cord-002994-1zjrunzc	323	45	emergence	emergence	NOUN
cord-002994-1zjrunzc	323	46	of	of	ADP
cord-002994-1zjrunzc	323	47	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	323	48	[	[	PUNCT
cord-002994-1zjrunzc	323	49	85	85	NUM
cord-002994-1zjrunzc	323	50	,	,	PUNCT
cord-002994-1zjrunzc	323	51	86	86	NUM
cord-002994-1zjrunzc	323	52	]	]	PUNCT
cord-002994-1zjrunzc	323	53	.	.	PUNCT
cord-002994-1zjrunzc	324	1	positive	positive	ADJ
cord-002994-1zjrunzc	324	2	selection	selection	NOUN
cord-002994-1zjrunzc	324	3	episodes	episode	NOUN
cord-002994-1zjrunzc	324	4	have	have	AUX
cord-002994-1zjrunzc	324	5	been	be	AUX
cord-002994-1zjrunzc	324	6	also	also	ADV
cord-002994-1zjrunzc	324	7	previously	previously	ADV
cord-002994-1zjrunzc	324	8	reported	report	VERB
cord-002994-1zjrunzc	324	9	for	for	ADP
cord-002994-1zjrunzc	324	10	the	the	DET
cord-002994-1zjrunzc	324	11	denv-3	denv-3	PROPN
cord-002994-1zjrunzc	324	12	capsid	capsid	NOUN
cord-002994-1zjrunzc	324	13	,	,	PUNCT
cord-002994-1zjrunzc	324	14	however	however	ADV
cord-002994-1zjrunzc	324	15	,	,	PUNCT
cord-002994-1zjrunzc	324	16	the	the	DET
cord-002994-1zjrunzc	324	17	impact	impact	NOUN
cord-002994-1zjrunzc	324	18	needs	need	VERB
cord-002994-1zjrunzc	324	19	to	to	PART
cord-002994-1zjrunzc	324	20	be	be	AUX
cord-002994-1zjrunzc	324	21	further	far	ADV
cord-002994-1zjrunzc	324	22	investigated	investigate	VERB
cord-002994-1zjrunzc	324	23	[	[	SYM
cord-002994-1zjrunzc	324	24	87	87	NUM
cord-002994-1zjrunzc	324	25	]	]	PUNCT
cord-002994-1zjrunzc	324	26	.	.	PUNCT
cord-002994-1zjrunzc	325	1	likewise	likewise	ADV
cord-002994-1zjrunzc	325	2	,	,	PUNCT
cord-002994-1zjrunzc	325	3	non	non	ADJ
cord-002994-1zjrunzc	325	4	-	-	ADJ
cord-002994-1zjrunzc	325	5	structural	structural	ADJ
cord-002994-1zjrunzc	325	6	proteins	protein	NOUN
cord-002994-1zjrunzc	325	7	could	could	AUX
cord-002994-1zjrunzc	325	8	also	also	ADV
cord-002994-1zjrunzc	325	9	be	be	AUX
cord-002994-1zjrunzc	325	10	targets	target	NOUN
cord-002994-1zjrunzc	325	11	of	of	ADP
cord-002994-1zjrunzc	325	12	positive	positive	ADJ
cord-002994-1zjrunzc	325	13	selection	selection	NOUN
cord-002994-1zjrunzc	325	14	.	.	PUNCT
cord-002994-1zjrunzc	326	1	the	the	DET
cord-002994-1zjrunzc	326	2	ns1	ns1	NOUN
cord-002994-1zjrunzc	326	3	protein	protein	NOUN
cord-002994-1zjrunzc	326	4	is	be	AUX
cord-002994-1zjrunzc	326	5	essential	essential	ADJ
cord-002994-1zjrunzc	326	6	for	for	ADP
cord-002994-1zjrunzc	326	7	viral	viral	ADJ
cord-002994-1zjrunzc	326	8	rna	rna	PROPN
cord-002994-1zjrunzc	326	9	replication	replication	NOUN
cord-002994-1zjrunzc	326	10	,	,	PUNCT
cord-002994-1zjrunzc	326	11	is	be	AUX
cord-002994-1zjrunzc	326	12	involved	involve	VERB
cord-002994-1zjrunzc	326	13	in	in	ADP
cord-002994-1zjrunzc	326	14	immune	immune	ADJ
cord-002994-1zjrunzc	326	15	system	system	NOUN
cord-002994-1zjrunzc	326	16	evasion	evasion	NOUN
cord-002994-1zjrunzc	326	17	,	,	PUNCT
cord-002994-1zjrunzc	326	18	and	and	CCONJ
cord-002994-1zjrunzc	326	19	represents	represent	VERB
cord-002994-1zjrunzc	326	20	the	the	DET
cord-002994-1zjrunzc	326	21	major	major	ADJ
cord-002994-1zjrunzc	326	22	positive	positive	ADJ
cord-002994-1zjrunzc	326	23	selection	selection	NOUN
cord-002994-1zjrunzc	326	24	target	target	NOUN
cord-002994-1zjrunzc	326	25	during	during	ADP
cord-002994-1zjrunzc	326	26	speciation	speciation	NOUN
cord-002994-1zjrunzc	326	27	of	of	ADP
cord-002994-1zjrunzc	326	28	arthropod	arthropod	NOUN
cord-002994-1zjrunzc	326	29	-	-	PUNCT
cord-002994-1zjrunzc	326	30	born	bear	VERB
cord-002994-1zjrunzc	326	31	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	326	32	such	such	ADJ
cord-002994-1zjrunzc	326	33	as	as	ADP
cord-002994-1zjrunzc	326	34	denv	denv	NOUN
cord-002994-1zjrunzc	326	35	and	and	CCONJ
cord-002994-1zjrunzc	326	36	zikv	zikv	PROPN
cord-002994-1zjrunzc	327	1	[	[	X
cord-002994-1zjrunzc	327	2	88	88	NUM
cord-002994-1zjrunzc	327	3	]	]	PUNCT
cord-002994-1zjrunzc	327	4	.	.	PUNCT
cord-002994-1zjrunzc	328	1	ns2a	ns2a	PROPN
cord-002994-1zjrunzc	328	2	and	and	CCONJ
cord-002994-1zjrunzc	328	3	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	328	4	proteins	protein	NOUN
cord-002994-1zjrunzc	328	5	have	have	AUX
cord-002994-1zjrunzc	328	6	been	be	AUX
cord-002994-1zjrunzc	328	7	shown	show	VERB
cord-002994-1zjrunzc	328	8	to	to	PART
cord-002994-1zjrunzc	328	9	antagonize	antagonize	VERB
cord-002994-1zjrunzc	328	10	the	the	DET
cord-002994-1zjrunzc	328	11	interferon	interferon	NOUN
cord-002994-1zjrunzc	328	12	response	response	NOUN
cord-002994-1zjrunzc	328	13	during	during	ADP
cord-002994-1zjrunzc	328	14	denv	denv	ADJ
cord-002994-1zjrunzc	328	15	infection	infection	NOUN
cord-002994-1zjrunzc	328	16	[	[	X
cord-002994-1zjrunzc	328	17	89	89	NUM
cord-002994-1zjrunzc	328	18	]	]	PUNCT
cord-002994-1zjrunzc	328	19	and	and	CCONJ
cord-002994-1zjrunzc	328	20	changes	change	NOUN
cord-002994-1zjrunzc	328	21	in	in	ADP
cord-002994-1zjrunzc	328	22	these	these	DET
cord-002994-1zjrunzc	328	23	regions	region	NOUN
cord-002994-1zjrunzc	328	24	would	would	AUX
cord-002994-1zjrunzc	328	25	be	be	AUX
cord-002994-1zjrunzc	328	26	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	328	27	advantageous	advantageous	ADJ
cord-002994-1zjrunzc	328	28	selecting	select	VERB
cord-002994-1zjrunzc	328	29	for	for	ADP
cord-002994-1zjrunzc	328	30	bagv	bagv	NOUN
cord-002994-1zjrunzc	328	31	strains	strain	VERB
cord-002994-1zjrunzc	328	32	with	with	ADP
cord-002994-1zjrunzc	328	33	strong	strong	ADJ
cord-002994-1zjrunzc	328	34	innate	innate	ADJ
cord-002994-1zjrunzc	328	35	immunity	immunity	NOUN
cord-002994-1zjrunzc	328	36	suppression	suppression	NOUN
cord-002994-1zjrunzc	328	37	mechanisms	mechanism	NOUN
cord-002994-1zjrunzc	328	38	.	.	PUNCT
cord-002994-1zjrunzc	329	1	mutations	mutation	NOUN
cord-002994-1zjrunzc	329	2	in	in	ADP
cord-002994-1zjrunzc	329	3	the	the	DET
cord-002994-1zjrunzc	329	4	ns4b	ns4b	PRON
cord-002994-1zjrunzc	329	5	protein	protein	NOUN
cord-002994-1zjrunzc	329	6	were	be	AUX
cord-002994-1zjrunzc	329	7	also	also	ADV
cord-002994-1zjrunzc	329	8	seen	see	VERB
cord-002994-1zjrunzc	329	9	to	to	PART
cord-002994-1zjrunzc	329	10	modulate	modulate	VERB
cord-002994-1zjrunzc	329	11	several	several	ADJ
cord-002994-1zjrunzc	329	12	phenotype	phenotype	NOUN
cord-002994-1zjrunzc	329	13	mechanisms	mechanism	NOUN
cord-002994-1zjrunzc	329	14	of	of	ADP
cord-002994-1zjrunzc	329	15	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	329	16	,	,	PUNCT
cord-002994-1zjrunzc	329	17	such	such	ADJ
cord-002994-1zjrunzc	329	18	as	as	ADP
cord-002994-1zjrunzc	329	19	pathogenesis	pathogenesis	NOUN
cord-002994-1zjrunzc	329	20	[	[	X
cord-002994-1zjrunzc	329	21	90	90	NUM
cord-002994-1zjrunzc	329	22	]	]	PUNCT
cord-002994-1zjrunzc	329	23	,	,	PUNCT
cord-002994-1zjrunzc	329	24	viral	viral	ADJ
cord-002994-1zjrunzc	329	25	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	329	26	[	[	X
cord-002994-1zjrunzc	329	27	91	91	NUM
cord-002994-1zjrunzc	329	28	]	]	PUNCT
cord-002994-1zjrunzc	329	29	,	,	PUNCT
cord-002994-1zjrunzc	329	30	replication	replication	NOUN
cord-002994-1zjrunzc	329	31	[	[	X
cord-002994-1zjrunzc	329	32	68	68	NUM
cord-002994-1zjrunzc	329	33	]	]	PUNCT
cord-002994-1zjrunzc	329	34	,	,	PUNCT
cord-002994-1zjrunzc	329	35	neurovirulence	neurovirulence	NOUN
cord-002994-1zjrunzc	330	1	[	[	PUNCT
cord-002994-1zjrunzc	330	2	66	66	NUM
cord-002994-1zjrunzc	330	3	]	]	PUNCT
cord-002994-1zjrunzc	330	4	and	and	CCONJ
cord-002994-1zjrunzc	330	5	host	host	NOUN
cord-002994-1zjrunzc	330	6	preferences	preference	NOUN
cord-002994-1zjrunzc	331	1	[	[	X
cord-002994-1zjrunzc	331	2	92	92	NUM
cord-002994-1zjrunzc	331	3	]	]	PUNCT
cord-002994-1zjrunzc	331	4	.	.	PUNCT
cord-002994-1zjrunzc	332	1	thus	thus	ADV
cord-002994-1zjrunzc	332	2	,	,	PUNCT
cord-002994-1zjrunzc	332	3	presence	presence	NOUN
cord-002994-1zjrunzc	332	4	of	of	ADP
cord-002994-1zjrunzc	332	5	positively	positively	ADV
cord-002994-1zjrunzc	332	6	selected	select	VERB
cord-002994-1zjrunzc	332	7	sites	site	NOUN
cord-002994-1zjrunzc	332	8	in	in	ADP
cord-002994-1zjrunzc	332	9	ns4b	ns4b	NUM
cord-002994-1zjrunzc	332	10	of	of	ADP
cord-002994-1zjrunzc	332	11	bagv	bagv	NOUN
cord-002994-1zjrunzc	332	12	isolates	isolate	NOUN
cord-002994-1zjrunzc	332	13	could	could	AUX
cord-002994-1zjrunzc	332	14	have	have	VERB
cord-002994-1zjrunzc	332	15	major	major	ADJ
cord-002994-1zjrunzc	332	16	impact	impact	NOUN
cord-002994-1zjrunzc	332	17	in	in	ADP
cord-002994-1zjrunzc	332	18	its	its	PRON
cord-002994-1zjrunzc	332	19	natural	natural	ADJ
cord-002994-1zjrunzc	332	20	evolution	evolution	NOUN
cord-002994-1zjrunzc	332	21	.	.	PUNCT
cord-002994-1zjrunzc	333	1	ns3	ns3	NOUN
cord-002994-1zjrunzc	333	2	and	and	CCONJ
cord-002994-1zjrunzc	333	3	ns5	ns5	PROPN
cord-002994-1zjrunzc	333	4	proteins	protein	NOUN
cord-002994-1zjrunzc	333	5	are	be	AUX
cord-002994-1zjrunzc	333	6	crucial	crucial	ADJ
cord-002994-1zjrunzc	333	7	for	for	ADP
cord-002994-1zjrunzc	333	8	viral	viral	ADJ
cord-002994-1zjrunzc	333	9	replication	replication	NOUN
cord-002994-1zjrunzc	333	10	,	,	PUNCT
cord-002994-1zjrunzc	333	11	since	since	SCONJ
cord-002994-1zjrunzc	333	12	non	non	ADJ
cord-002994-1zjrunzc	333	13	-	-	ADJ
cord-002994-1zjrunzc	333	14	conservative	conservative	ADJ
cord-002994-1zjrunzc	333	15	changes	change	NOUN
cord-002994-1zjrunzc	333	16	in	in	ADP
cord-002994-1zjrunzc	333	17	these	these	DET
cord-002994-1zjrunzc	333	18	regions	region	NOUN
cord-002994-1zjrunzc	333	19	could	could	AUX
cord-002994-1zjrunzc	333	20	modify	modify	VERB
cord-002994-1zjrunzc	333	21	process	process	NOUN
cord-002994-1zjrunzc	333	22	of	of	ADP
cord-002994-1zjrunzc	333	23	protease	protease	NOUN
cord-002994-1zjrunzc	333	24	and	and	CCONJ
cord-002994-1zjrunzc	333	25	atpase	atpase	PROPN
cord-002994-1zjrunzc	333	26	/	/	SYM
cord-002994-1zjrunzc	333	27	helicase	helicase	NOUN
cord-002994-1zjrunzc	333	28	functions	function	NOUN
cord-002994-1zjrunzc	333	29	of	of	ADP
cord-002994-1zjrunzc	333	30	ns3	ns3	ADJ
cord-002994-1zjrunzc	333	31	protein	protein	NOUN
cord-002994-1zjrunzc	333	32	[	[	X
cord-002994-1zjrunzc	333	33	93	93	NUM
cord-002994-1zjrunzc	333	34	]	]	PUNCT
cord-002994-1zjrunzc	333	35	and	and	CCONJ
cord-002994-1zjrunzc	333	36	rna	rna	NOUN
cord-002994-1zjrunzc	333	37	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	333	38	activity	activity	NOUN
cord-002994-1zjrunzc	333	39	of	of	ADP
cord-002994-1zjrunzc	333	40	ns5	ns5	PROPN
cord-002994-1zjrunzc	333	41	protein	protein	NOUN
cord-002994-1zjrunzc	334	1	[	[	X
cord-002994-1zjrunzc	334	2	94	94	NUM
cord-002994-1zjrunzc	334	3	]	]	PUNCT
cord-002994-1zjrunzc	334	4	.	.	PUNCT
cord-002994-1zjrunzc	335	1	these	these	DET
cord-002994-1zjrunzc	335	2	several	several	ADJ
cord-002994-1zjrunzc	335	3	polymorphic	polymorphic	ADJ
cord-002994-1zjrunzc	335	4	amino	amino	NOUN
cord-002994-1zjrunzc	335	5	acid	acid	NOUN
cord-002994-1zjrunzc	335	6	coding	code	VERB
cord-002994-1zjrunzc	335	7	sites	site	NOUN
cord-002994-1zjrunzc	335	8	in	in	ADP
cord-002994-1zjrunzc	335	9	the	the	DET
cord-002994-1zjrunzc	335	10	bagv	bagv	NOUN
cord-002994-1zjrunzc	335	11	genome	genome	NOUN
cord-002994-1zjrunzc	335	12	suggest	suggest	VERB
cord-002994-1zjrunzc	335	13	that	that	SCONJ
cord-002994-1zjrunzc	335	14	these	these	DET
cord-002994-1zjrunzc	335	15	proteins	protein	NOUN
cord-002994-1zjrunzc	335	16	may	may	AUX
cord-002994-1zjrunzc	335	17	be	be	AUX
cord-002994-1zjrunzc	335	18	experiencing	experience	VERB
cord-002994-1zjrunzc	335	19	relatively	relatively	ADV
cord-002994-1zjrunzc	335	20	adaptive	adaptive	ADJ
cord-002994-1zjrunzc	335	21	changes	change	NOUN
cord-002994-1zjrunzc	335	22	in	in	ADP
cord-002994-1zjrunzc	335	23	the	the	DET
cord-002994-1zjrunzc	335	24	natural	natural	ADJ
cord-002994-1zjrunzc	335	25	evolution	evolution	NOUN
cord-002994-1zjrunzc	335	26	and	and	CCONJ
cord-002994-1zjrunzc	335	27	they	they	PRON
cord-002994-1zjrunzc	335	28	should	should	AUX
cord-002994-1zjrunzc	335	29	be	be	AUX
cord-002994-1zjrunzc	335	30	prioritized	prioritize	VERB
cord-002994-1zjrunzc	335	31	in	in	ADP
cord-002994-1zjrunzc	335	32	future	future	ADJ
cord-002994-1zjrunzc	335	33	experimental	experimental	ADJ
cord-002994-1zjrunzc	335	34	studies	study	NOUN
cord-002994-1zjrunzc	335	35	.	.	PUNCT
cord-002994-1zjrunzc	336	1	despite	despite	SCONJ
cord-002994-1zjrunzc	336	2	the	the	DET
cord-002994-1zjrunzc	336	3	evidence	evidence	NOUN
cord-002994-1zjrunzc	336	4	of	of	ADP
cord-002994-1zjrunzc	336	5	a	a	DET
cord-002994-1zjrunzc	336	6	single	single	ADJ
cord-002994-1zjrunzc	336	7	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	336	8	group	group	NOUN
cord-002994-1zjrunzc	336	9	for	for	ADP
cord-002994-1zjrunzc	336	10	bagv	bagv	PROPN
cord-002994-1zjrunzc	336	11	sequences	sequence	NOUN
cord-002994-1zjrunzc	336	12	analyzed	analyze	VERB
cord-002994-1zjrunzc	336	13	in	in	ADP
cord-002994-1zjrunzc	336	14	our	our	PRON
cord-002994-1zjrunzc	336	15	study	study	NOUN
cord-002994-1zjrunzc	336	16	,	,	PUNCT
cord-002994-1zjrunzc	336	17	the	the	DET
cord-002994-1zjrunzc	336	18	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	336	19	rates	rate	NOUN
cord-002994-1zjrunzc	336	20	are	be	AUX
cord-002994-1zjrunzc	336	21	expected	expect	VERB
cord-002994-1zjrunzc	336	22	in	in	ADP
cord-002994-1zjrunzc	336	23	accordance	accordance	NOUN
cord-002994-1zjrunzc	336	24	to	to	ADP
cord-002994-1zjrunzc	336	25	proteins	protein	NOUN
cord-002994-1zjrunzc	336	26	functions	function	NOUN
cord-002994-1zjrunzc	336	27	;	;	PUNCT
cord-002994-1zjrunzc	336	28	the	the	DET
cord-002994-1zjrunzc	336	29	ns5	ns5	NOUN
cord-002994-1zjrunzc	336	30	representing	represent	VERB
cord-002994-1zjrunzc	336	31	the	the	DET
cord-002994-1zjrunzc	336	32	polymerase	polymerase	NOUN
cord-002994-1zjrunzc	336	33	and	and	CCONJ
cord-002994-1zjrunzc	336	34	the	the	DET
cord-002994-1zjrunzc	336	35	most	most	ADV
cord-002994-1zjrunzc	336	36	conserved	conserved	ADJ
cord-002994-1zjrunzc	336	37	protein	protein	NOUN
cord-002994-1zjrunzc	336	38	[	[	X
cord-002994-1zjrunzc	336	39	86	86	NUM
cord-002994-1zjrunzc	336	40	]	]	PUNCT
cord-002994-1zjrunzc	336	41	.	.	PUNCT
cord-002994-1zjrunzc	337	1	the	the	DET
cord-002994-1zjrunzc	337	2	inferred	infer	VERB
cord-002994-1zjrunzc	337	3	bayesian	bayesian	PROPN
cord-002994-1zjrunzc	337	4	mcc	mcc	PROPN
cord-002994-1zjrunzc	337	5	trees	tree	NOUN
cord-002994-1zjrunzc	337	6	indicated	indicate	VERB
cord-002994-1zjrunzc	337	7	a	a	DET
cord-002994-1zjrunzc	337	8	single	single	ADJ
cord-002994-1zjrunzc	337	9	introduction	introduction	NOUN
cord-002994-1zjrunzc	337	10	of	of	ADP
cord-002994-1zjrunzc	337	11	bagv	bagv	PROPN
cord-002994-1zjrunzc	337	12	into	into	ADP
cord-002994-1zjrunzc	337	13	europe	europe	PROPN
cord-002994-1zjrunzc	337	14	and	and	CCONJ
cord-002994-1zjrunzc	337	15	africa	africa	PROPN
cord-002994-1zjrunzc	337	16	from	from	ADP
cord-002994-1zjrunzc	337	17	india	india	PROPN
cord-002994-1zjrunzc	337	18	,	,	PUNCT
cord-002994-1zjrunzc	337	19	contrary	contrary	ADJ
cord-002994-1zjrunzc	337	20	to	to	ADP
cord-002994-1zjrunzc	337	21	other	other	ADJ
cord-002994-1zjrunzc	337	22	african	african	ADJ
cord-002994-1zjrunzc	337	23	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	337	24	as	as	SCONJ
cord-002994-1zjrunzc	337	25	wnv	wnv	NOUN
cord-002994-1zjrunzc	337	26	[	[	X
cord-002994-1zjrunzc	337	27	95	95	NUM
cord-002994-1zjrunzc	337	28	]	]	PUNCT
cord-002994-1zjrunzc	337	29	and	and	CCONJ
cord-002994-1zjrunzc	337	30	zikv	zikv	PROPN
cord-002994-1zjrunzc	338	1	[	[	X
cord-002994-1zjrunzc	338	2	74	74	NUM
cord-002994-1zjrunzc	338	3	]	]	PUNCT
cord-002994-1zjrunzc	338	4	,	,	PUNCT
cord-002994-1zjrunzc	338	5	suggesting	suggest	VERB
cord-002994-1zjrunzc	338	6	an	an	DET
cord-002994-1zjrunzc	338	7	indian	indian	ADJ
cord-002994-1zjrunzc	338	8	origin	origin	NOUN
cord-002994-1zjrunzc	338	9	of	of	ADP
cord-002994-1zjrunzc	338	10	bagv	bagv	PROPN
cord-002994-1zjrunzc	338	11	.	.	PUNCT
cord-002994-1zjrunzc	339	1	estimated	estimate	VERB
cord-002994-1zjrunzc	339	2	times	time	NOUN
cord-002994-1zjrunzc	339	3	from	from	ADP
cord-002994-1zjrunzc	339	4	the	the	DET
cord-002994-1zjrunzc	339	5	mrca	mrca	NOUN
cord-002994-1zjrunzc	339	6	suggested	suggest	VERB
cord-002994-1zjrunzc	339	7	a	a	DET
cord-002994-1zjrunzc	339	8	distant	distant	ADJ
cord-002994-1zjrunzc	339	9	origin	origin	NOUN
cord-002994-1zjrunzc	339	10	of	of	ADP
cord-002994-1zjrunzc	339	11	west	west	PROPN
cord-002994-1zjrunzc	339	12	african	african	PROPN
cord-002994-1zjrunzc	339	13	bagv	bagv	PROPN
cord-002994-1zjrunzc	339	14	sequences	sequence	NOUN
cord-002994-1zjrunzc	339	15	analyzed	analyze	VERB
cord-002994-1zjrunzc	339	16	in	in	ADP
cord-002994-1zjrunzc	339	17	this	this	DET
cord-002994-1zjrunzc	339	18	study	study	NOUN
cord-002994-1zjrunzc	339	19	from	from	ADP
cord-002994-1zjrunzc	339	20	the	the	DET
cord-002994-1zjrunzc	339	21	15th	15th	ADJ
cord-002994-1zjrunzc	339	22	century	century	NOUN
cord-002994-1zjrunzc	339	23	.	.	PUNCT
cord-002994-1zjrunzc	340	1	thus	thus	ADV
cord-002994-1zjrunzc	340	2	,	,	PUNCT
cord-002994-1zjrunzc	340	3	further	far	ADV
cord-002994-1zjrunzc	340	4	phylodynamic	phylodynamic	ADV
cord-002994-1zjrunzc	340	5	analyzes	analyze	NOUN
cord-002994-1zjrunzc	340	6	based	base	VERB
cord-002994-1zjrunzc	340	7	on	on	ADP
cord-002994-1zjrunzc	340	8	more	more	ADV
cord-002994-1zjrunzc	340	9	complete	complete	ADJ
cord-002994-1zjrunzc	340	10	sequences	sequence	NOUN
cord-002994-1zjrunzc	340	11	could	could	AUX
cord-002994-1zjrunzc	340	12	be	be	AUX
cord-002994-1zjrunzc	340	13	interesting	interesting	ADJ
cord-002994-1zjrunzc	340	14	for	for	ADP
cord-002994-1zjrunzc	340	15	determining	determine	VERB
cord-002994-1zjrunzc	340	16	geographical	geographical	ADJ
cord-002994-1zjrunzc	340	17	pathways	pathway	NOUN
cord-002994-1zjrunzc	340	18	and	and	CCONJ
cord-002994-1zjrunzc	340	19	potential	potential	ADJ
cord-002994-1zjrunzc	340	20	evolution	evolution	NOUN
cord-002994-1zjrunzc	340	21	patterns	pattern	NOUN
cord-002994-1zjrunzc	340	22	in	in	ADP
cord-002994-1zjrunzc	340	23	correlation	correlation	NOUN
cord-002994-1zjrunzc	340	24	with	with	ADP
cord-002994-1zjrunzc	340	25	bagv	bagv	PROPN
cord-002994-1zjrunzc	340	26	spread	spread	VERB
cord-002994-1zjrunzc	340	27	from	from	ADP
cord-002994-1zjrunzc	340	28	india	india	PROPN
cord-002994-1zjrunzc	340	29	to	to	ADP
cord-002994-1zjrunzc	340	30	african	african	ADJ
cord-002994-1zjrunzc	340	31	and	and	CCONJ
cord-002994-1zjrunzc	340	32	european	european	ADJ
cord-002994-1zjrunzc	340	33	continents	continent	NOUN
cord-002994-1zjrunzc	340	34	.	.	PUNCT
cord-002994-1zjrunzc	341	1	the	the	DET
cord-002994-1zjrunzc	341	2	codon	codon	PROPN
cord-002994-1zjrunzc	341	3	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	341	4	index	index	NOUN
cord-002994-1zjrunzc	341	5	(	(	PUNCT
cord-002994-1zjrunzc	341	6	cai	cai	X
cord-002994-1zjrunzc	341	7	)	)	PUNCT
cord-002994-1zjrunzc	341	8	represents	represent	VERB
cord-002994-1zjrunzc	341	9	a	a	DET
cord-002994-1zjrunzc	341	10	reliable	reliable	ADJ
cord-002994-1zjrunzc	341	11	bio	bio	NOUN
cord-002994-1zjrunzc	341	12	-	-	PUNCT
cord-002994-1zjrunzc	341	13	informatics	informatic	NOUN
cord-002994-1zjrunzc	341	14	approach	approach	NOUN
cord-002994-1zjrunzc	341	15	to	to	PART
cord-002994-1zjrunzc	341	16	measure	measure	VERB
cord-002994-1zjrunzc	341	17	the	the	DET
cord-002994-1zjrunzc	341	18	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	341	19	codon	codon	NOUN
cord-002994-1zjrunzc	341	20	usage	usage	NOUN
cord-002994-1zjrunzc	341	21	bias	bias	NOUN
cord-002994-1zjrunzc	341	22	and	and	CCONJ
cord-002994-1zjrunzc	341	23	to	to	PART
cord-002994-1zjrunzc	341	24	assess	assess	VERB
cord-002994-1zjrunzc	341	25	the	the	DET
cord-002994-1zjrunzc	341	26	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	341	27	of	of	ADP
cord-002994-1zjrunzc	341	28	viral	viral	ADJ
cord-002994-1zjrunzc	341	29	genes	gene	NOUN
cord-002994-1zjrunzc	341	30	to	to	ADP
cord-002994-1zjrunzc	341	31	their	their	PRON
cord-002994-1zjrunzc	341	32	hosts	host	NOUN
cord-002994-1zjrunzc	341	33	[	[	X
cord-002994-1zjrunzc	341	34	96	96	NUM
cord-002994-1zjrunzc	341	35	]	]	PUNCT
cord-002994-1zjrunzc	341	36	.	.	PUNCT
cord-002994-1zjrunzc	342	1	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	342	2	can	can	AUX
cord-002994-1zjrunzc	342	3	infect	infect	VERB
cord-002994-1zjrunzc	342	4	and	and	CCONJ
cord-002994-1zjrunzc	342	5	replicate	replicate	VERB
cord-002994-1zjrunzc	342	6	in	in	ADP
cord-002994-1zjrunzc	342	7	hosts	host	NOUN
cord-002994-1zjrunzc	342	8	of	of	ADP
cord-002994-1zjrunzc	342	9	different	different	ADJ
cord-002994-1zjrunzc	342	10	phyla	phyla	NOUN
cord-002994-1zjrunzc	342	11	.	.	PUNCT
cord-002994-1zjrunzc	343	1	therefore	therefore	ADV
cord-002994-1zjrunzc	343	2	,	,	PUNCT
cord-002994-1zjrunzc	343	3	their	their	PRON
cord-002994-1zjrunzc	343	4	versatility	versatility	NOUN
cord-002994-1zjrunzc	343	5	in	in	ADP
cord-002994-1zjrunzc	343	6	gene	gene	NOUN
cord-002994-1zjrunzc	343	7	expression	expression	NOUN
cord-002994-1zjrunzc	343	8	and	and	CCONJ
cord-002994-1zjrunzc	343	9	protein	protein	NOUN
cord-002994-1zjrunzc	343	10	synthesis	synthesis	NOUN
cord-002994-1zjrunzc	343	11	and	and	CCONJ
cord-002994-1zjrunzc	343	12	changes	change	NOUN
cord-002994-1zjrunzc	343	13	in	in	ADP
cord-002994-1zjrunzc	343	14	the	the	DET
cord-002994-1zjrunzc	343	15	viral	viral	ADJ
cord-002994-1zjrunzc	343	16	rna	rna	NOUN
cord-002994-1zjrunzc	343	17	genome	genome	NOUN
cord-002994-1zjrunzc	343	18	could	could	AUX
cord-002994-1zjrunzc	343	19	affect	affect	VERB
cord-002994-1zjrunzc	343	20	the	the	DET
cord-002994-1zjrunzc	343	21	fitness	fitness	NOUN
cord-002994-1zjrunzc	343	22	of	of	ADP
cord-002994-1zjrunzc	343	23	the	the	DET
cord-002994-1zjrunzc	343	24	virus	virus	NOUN
cord-002994-1zjrunzc	343	25	in	in	ADP
cord-002994-1zjrunzc	343	26	a	a	DET
cord-002994-1zjrunzc	343	27	specific	specific	ADJ
cord-002994-1zjrunzc	343	28	host	host	NOUN
cord-002994-1zjrunzc	343	29	relating	relate	VERB
cord-002994-1zjrunzc	343	30	to	to	ADP
cord-002994-1zjrunzc	343	31	dinucleotide	dinucleotide	NOUN
cord-002994-1zjrunzc	343	32	frequencies	frequency	NOUN
cord-002994-1zjrunzc	343	33	,	,	PUNCT
cord-002994-1zjrunzc	343	34	codon	codon	NOUN
cord-002994-1zjrunzc	343	35	preferences	preference	NOUN
cord-002994-1zjrunzc	343	36	,	,	PUNCT
cord-002994-1zjrunzc	343	37	and	and	CCONJ
cord-002994-1zjrunzc	343	38	codon	codon	NOUN
cord-002994-1zjrunzc	343	39	pair	pair	NOUN
cord-002994-1zjrunzc	343	40	biases	bias	NOUN
cord-002994-1zjrunzc	343	41	[	[	X
cord-002994-1zjrunzc	343	42	97	97	NUM
cord-002994-1zjrunzc	343	43	]	]	PUNCT
cord-002994-1zjrunzc	343	44	[	[	X
cord-002994-1zjrunzc	343	45	98	98	NUM
cord-002994-1zjrunzc	343	46	]	]	PUNCT
cord-002994-1zjrunzc	343	47	[	[	X
cord-002994-1zjrunzc	343	48	99	99	NUM
cord-002994-1zjrunzc	343	49	]	]	PUNCT
cord-002994-1zjrunzc	343	50	.	.	PUNCT
cord-002994-1zjrunzc	344	1	nevertheless	nevertheless	ADV
cord-002994-1zjrunzc	344	2	,	,	PUNCT
cord-002994-1zjrunzc	344	3	ecology	ecology	NOUN
cord-002994-1zjrunzc	344	4	,	,	PUNCT
cord-002994-1zjrunzc	344	5	different	different	ADJ
cord-002994-1zjrunzc	344	6	virus	virus	NOUN
cord-002994-1zjrunzc	344	7	-	-	PUNCT
cord-002994-1zjrunzc	344	8	host	host	NOUN
cord-002994-1zjrunzc	344	9	relationships	relationship	NOUN
cord-002994-1zjrunzc	344	10	,	,	PUNCT
cord-002994-1zjrunzc	344	11	biogeographical	biogeographical	ADJ
cord-002994-1zjrunzc	344	12	migrations	migration	NOUN
cord-002994-1zjrunzc	344	13	of	of	ADP
cord-002994-1zjrunzc	344	14	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	344	15	species	specie	NOUN
cord-002994-1zjrunzc	344	16	and	and	CCONJ
cord-002994-1zjrunzc	344	17	genetic	genetic	ADJ
cord-002994-1zjrunzc	344	18	differences	difference	NOUN
cord-002994-1zjrunzc	344	19	may	may	AUX
cord-002994-1zjrunzc	344	20	explain	explain	VERB
cord-002994-1zjrunzc	344	21	observed	observed	ADJ
cord-002994-1zjrunzc	344	22	differences	difference	NOUN
cord-002994-1zjrunzc	344	23	in	in	ADP
cord-002994-1zjrunzc	344	24	flaviviral	flaviviral	ADJ
cord-002994-1zjrunzc	344	25	codon	codon	NOUN
cord-002994-1zjrunzc	344	26	usage	usage	NOUN
cord-002994-1zjrunzc	344	27	preference	preference	NOUN
cord-002994-1zjrunzc	344	28	to	to	ADP
cord-002994-1zjrunzc	344	29	human	human	ADJ
cord-002994-1zjrunzc	344	30	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	344	31	genes	gene	NOUN
cord-002994-1zjrunzc	344	32	[	[	X
cord-002994-1zjrunzc	344	33	98	98	NUM
cord-002994-1zjrunzc	344	34	,	,	PUNCT
cord-002994-1zjrunzc	344	35	100	100	NUM
cord-002994-1zjrunzc	344	36	,	,	PUNCT
cord-002994-1zjrunzc	344	37	101	101	NUM
cord-002994-1zjrunzc	344	38	]	]	PUNCT
cord-002994-1zjrunzc	344	39	.	.	PUNCT
cord-002994-1zjrunzc	345	1	in	in	ADP
cord-002994-1zjrunzc	345	2	particular	particular	ADJ
cord-002994-1zjrunzc	345	3	,	,	PUNCT
cord-002994-1zjrunzc	345	4	nkv	nkv	ADJ
cord-002994-1zjrunzc	345	5	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	345	6	were	be	AUX
cord-002994-1zjrunzc	345	7	only	only	ADV
cord-002994-1zjrunzc	345	8	isolated	isolate	VERB
cord-002994-1zjrunzc	345	9	from	from	ADP
cord-002994-1zjrunzc	345	10	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	345	11	and	and	CCONJ
cord-002994-1zjrunzc	345	12	are	be	AUX
cord-002994-1zjrunzc	345	13	maintained	maintain	VERB
cord-002994-1zjrunzc	345	14	in	in	ADP
cord-002994-1zjrunzc	345	15	nature	nature	NOUN
cord-002994-1zjrunzc	345	16	by	by	ADP
cord-002994-1zjrunzc	345	17	horizontal	horizontal	ADJ
cord-002994-1zjrunzc	345	18	transmission	transmission	NOUN
cord-002994-1zjrunzc	345	19	between	between	ADP
cord-002994-1zjrunzc	345	20	vertebrate	vertebrate	ADJ
cord-002994-1zjrunzc	345	21	hosts	host	NOUN
cord-002994-1zjrunzc	345	22	[	[	X
cord-002994-1zjrunzc	345	23	102	102	NUM
cord-002994-1zjrunzc	345	24	,	,	PUNCT
cord-002994-1zjrunzc	345	25	103	103	NUM
cord-002994-1zjrunzc	345	26	]	]	PUNCT
cord-002994-1zjrunzc	345	27	.	.	PUNCT
cord-002994-1zjrunzc	346	1	although	although	SCONJ
cord-002994-1zjrunzc	346	2	isfs	isfs	PROPN
cord-002994-1zjrunzc	346	3	were	be	AUX
cord-002994-1zjrunzc	346	4	thought	think	VERB
cord-002994-1zjrunzc	346	5	to	to	PART
cord-002994-1zjrunzc	346	6	sustain	sustain	VERB
cord-002994-1zjrunzc	346	7	their	their	PRON
cord-002994-1zjrunzc	346	8	populations	population	NOUN
cord-002994-1zjrunzc	346	9	in	in	ADP
cord-002994-1zjrunzc	346	10	their	their	PRON
cord-002994-1zjrunzc	346	11	respective	respective	ADJ
cord-002994-1zjrunzc	346	12	insect	insect	NOUN
cord-002994-1zjrunzc	346	13	vectors	vector	NOUN
cord-002994-1zjrunzc	346	14	in	in	ADP
cord-002994-1zjrunzc	346	15	the	the	DET
cord-002994-1zjrunzc	346	16	absence	absence	NOUN
cord-002994-1zjrunzc	346	17	of	of	ADP
cord-002994-1zjrunzc	346	18	mammal	mammal	ADJ
cord-002994-1zjrunzc	346	19	reservoirs	reservoir	NOUN
cord-002994-1zjrunzc	346	20	,	,	PUNCT
cord-002994-1zjrunzc	346	21	so	so	ADV
cord-002994-1zjrunzc	346	22	lower	low	ADJ
cord-002994-1zjrunzc	346	23	translational	translational	ADJ
cord-002994-1zjrunzc	346	24	efficiency	efficiency	NOUN
cord-002994-1zjrunzc	346	25	in	in	ADP
cord-002994-1zjrunzc	346	26	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	346	27	could	could	AUX
cord-002994-1zjrunzc	346	28	be	be	AUX
cord-002994-1zjrunzc	346	29	expected	expect	VERB
cord-002994-1zjrunzc	346	30	[	[	X
cord-002994-1zjrunzc	346	31	97	97	NUM
cord-002994-1zjrunzc	346	32	,	,	PUNCT
cord-002994-1zjrunzc	346	33	104	104	NUM
cord-002994-1zjrunzc	346	34	]	]	PUNCT
cord-002994-1zjrunzc	346	35	.	.	PUNCT
cord-002994-1zjrunzc	347	1	in	in	ADP
cord-002994-1zjrunzc	347	2	addition	addition	NOUN
cord-002994-1zjrunzc	347	3	,	,	PUNCT
cord-002994-1zjrunzc	347	4	the	the	DET
cord-002994-1zjrunzc	347	5	highest	high	ADJ
cord-002994-1zjrunzc	347	6	cais	cai	NOUN
cord-002994-1zjrunzc	347	7	of	of	ADP
cord-002994-1zjrunzc	347	8	yfv	yfv	PROPN
cord-002994-1zjrunzc	347	9	and	and	CCONJ
cord-002994-1zjrunzc	347	10	denv	denv	NOUN
cord-002994-1zjrunzc	347	11	could	could	AUX
cord-002994-1zjrunzc	347	12	be	be	AUX
cord-002994-1zjrunzc	347	13	related	relate	VERB
cord-002994-1zjrunzc	347	14	to	to	ADP
cord-002994-1zjrunzc	347	15	their	their	PRON
cord-002994-1zjrunzc	347	16	long	long	ADJ
cord-002994-1zjrunzc	347	17	histories	history	NOUN
cord-002994-1zjrunzc	347	18	of	of	ADP
cord-002994-1zjrunzc	347	19	infection	infection	NOUN
cord-002994-1zjrunzc	347	20	in	in	ADP
cord-002994-1zjrunzc	347	21	humans	human	NOUN
cord-002994-1zjrunzc	347	22	[	[	X
cord-002994-1zjrunzc	347	23	105	105	NUM
cord-002994-1zjrunzc	347	24	]	]	PUNCT
cord-002994-1zjrunzc	347	25	.	.	PUNCT
cord-002994-1zjrunzc	348	1	indeed	indeed	ADV
cord-002994-1zjrunzc	348	2	,	,	PUNCT
cord-002994-1zjrunzc	348	3	yfv	yfv	PROPN
cord-002994-1zjrunzc	348	4	and	and	CCONJ
cord-002994-1zjrunzc	348	5	denv	denv	NOUN
cord-002994-1zjrunzc	348	6	are	be	AUX
cord-002994-1zjrunzc	348	7	maintained	maintain	VERB
cord-002994-1zjrunzc	348	8	in	in	ADP
cord-002994-1zjrunzc	348	9	endemic	endemic	ADJ
cord-002994-1zjrunzc	348	10	and	and	CCONJ
cord-002994-1zjrunzc	348	11	sylvatic	sylvatic	ADJ
cord-002994-1zjrunzc	348	12	cycles	cycle	NOUN
cord-002994-1zjrunzc	348	13	,	,	PUNCT
cord-002994-1zjrunzc	348	14	which	which	PRON
cord-002994-1zjrunzc	348	15	conducted	conduct	VERB
cord-002994-1zjrunzc	348	16	to	to	ADP
cord-002994-1zjrunzc	348	17	repeated	repeat	VERB
cord-002994-1zjrunzc	348	18	epidemics	epidemic	NOUN
cord-002994-1zjrunzc	348	19	for	for	ADP
cord-002994-1zjrunzc	348	20	more	more	ADJ
cord-002994-1zjrunzc	348	21	than	than	ADP
cord-002994-1zjrunzc	348	22	one	one	NUM
cord-002994-1zjrunzc	348	23	hundred	hundred	NUM
cord-002994-1zjrunzc	348	24	years	year	NOUN
cord-002994-1zjrunzc	348	25	.	.	PUNCT
cord-002994-1zjrunzc	349	1	however	however	ADV
cord-002994-1zjrunzc	349	2	,	,	PUNCT
cord-002994-1zjrunzc	349	3	yfv	yfv	PROPN
cord-002994-1zjrunzc	349	4	showed	show	VERB
cord-002994-1zjrunzc	349	5	generally	generally	ADV
cord-002994-1zjrunzc	349	6	a	a	DET
cord-002994-1zjrunzc	349	7	higher	high	ADJ
cord-002994-1zjrunzc	349	8	virulence	virulence	NOUN
cord-002994-1zjrunzc	349	9	in	in	ADP
cord-002994-1zjrunzc	349	10	human	human	ADJ
cord-002994-1zjrunzc	349	11	infections	infection	NOUN
cord-002994-1zjrunzc	349	12	,	,	PUNCT
cord-002994-1zjrunzc	349	13	particularly	particularly	ADV
cord-002994-1zjrunzc	349	14	when	when	SCONJ
cord-002994-1zjrunzc	349	15	it	it	PRON
cord-002994-1zjrunzc	349	16	is	be	AUX
cord-002994-1zjrunzc	349	17	compared	compare	VERB
cord-002994-1zjrunzc	349	18	to	to	ADP
cord-002994-1zjrunzc	349	19	denv	denv	ADJ
cord-002994-1zjrunzc	349	20	infections	infection	NOUN
cord-002994-1zjrunzc	349	21	reported	report	VERB
cord-002994-1zjrunzc	349	22	in	in	ADP
cord-002994-1zjrunzc	349	23	africa	africa	PROPN
cord-002994-1zjrunzc	350	1	[	[	PUNCT
cord-002994-1zjrunzc	350	2	106	106	NUM
cord-002994-1zjrunzc	350	3	]	]	PUNCT
cord-002994-1zjrunzc	350	4	.	.	PUNCT
cord-002994-1zjrunzc	351	1	this	this	PRON
cord-002994-1zjrunzc	351	2	could	could	AUX
cord-002994-1zjrunzc	351	3	explain	explain	VERB
cord-002994-1zjrunzc	351	4	the	the	DET
cord-002994-1zjrunzc	351	5	higher	high	ADJ
cord-002994-1zjrunzc	351	6	cai	cai	NOUN
cord-002994-1zjrunzc	351	7	values	value	NOUN
cord-002994-1zjrunzc	351	8	of	of	ADP
cord-002994-1zjrunzc	351	9	yfv	yfv	NOUN
cord-002994-1zjrunzc	351	10	towards	towards	ADP
cord-002994-1zjrunzc	351	11	codon	codon	NOUN
cord-002994-1zjrunzc	351	12	usage	usage	NOUN
cord-002994-1zjrunzc	351	13	of	of	ADP
cord-002994-1zjrunzc	351	14	the	the	DET
cord-002994-1zjrunzc	351	15	human	human	ADJ
cord-002994-1zjrunzc	351	16	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	351	17	genes	gene	NOUN
cord-002994-1zjrunzc	351	18	.	.	PUNCT
cord-002994-1zjrunzc	352	1	with	with	ADP
cord-002994-1zjrunzc	352	2	evidence	evidence	NOUN
cord-002994-1zjrunzc	352	3	of	of	ADP
cord-002994-1zjrunzc	352	4	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	352	5	to	to	ADP
cord-002994-1zjrunzc	352	6	human	human	PROPN
cord-002994-1zjrunzc	352	7	house	house	NOUN
cord-002994-1zjrunzc	352	8	-	-	PUNCT
cord-002994-1zjrunzc	352	9	keeping	keep	VERB
cord-002994-1zjrunzc	352	10	genes	gene	NOUN
cord-002994-1zjrunzc	352	11	,	,	PUNCT
cord-002994-1zjrunzc	352	12	bagv	bagv	PROPN
cord-002994-1zjrunzc	352	13	could	could	AUX
cord-002994-1zjrunzc	352	14	be	be	AUX
cord-002994-1zjrunzc	352	15	potential	potential	ADJ
cord-002994-1zjrunzc	352	16	cause	cause	NOUN
cord-002994-1zjrunzc	352	17	of	of	ADP
cord-002994-1zjrunzc	352	18	infection	infection	NOUN
cord-002994-1zjrunzc	352	19	in	in	ADP
cord-002994-1zjrunzc	352	20	vertebrates	vertebrate	NOUN
cord-002994-1zjrunzc	352	21	,	,	PUNCT
cord-002994-1zjrunzc	352	22	such	such	ADJ
cord-002994-1zjrunzc	352	23	as	as	ADP
cord-002994-1zjrunzc	352	24	humans	human	NOUN
cord-002994-1zjrunzc	352	25	.	.	PUNCT
cord-002994-1zjrunzc	353	1	considering	consider	VERB
cord-002994-1zjrunzc	353	2	the	the	DET
cord-002994-1zjrunzc	353	3	highest	high	ADJ
cord-002994-1zjrunzc	353	4	cai	cai	NOUN
cord-002994-1zjrunzc	353	5	values	value	NOUN
cord-002994-1zjrunzc	353	6	of	of	ADP
cord-002994-1zjrunzc	353	7	west	west	PROPN
cord-002994-1zjrunzc	353	8	african	african	ADJ
cord-002994-1zjrunzc	353	9	bagv	bagv	PROPN
cord-002994-1zjrunzc	353	10	isolates	isolate	VERB
cord-002994-1zjrunzc	353	11	when	when	SCONJ
cord-002994-1zjrunzc	353	12	compared	compare	VERB
cord-002994-1zjrunzc	353	13	to	to	ADP
cord-002994-1zjrunzc	353	14	isolates	isolate	NOUN
cord-002994-1zjrunzc	353	15	responsible	responsible	ADJ
cord-002994-1zjrunzc	353	16	of	of	ADP
cord-002994-1zjrunzc	353	17	the	the	DET
cord-002994-1zjrunzc	353	18	spanish	spanish	ADJ
cord-002994-1zjrunzc	353	19	wild	wild	PROPN
cord-002994-1zjrunzc	353	20	bird	bird	NOUN
cord-002994-1zjrunzc	353	21	's	's	PART
cord-002994-1zjrunzc	353	22	outbreak	outbreak	NOUN
cord-002994-1zjrunzc	353	23	in	in	ADP
cord-002994-1zjrunzc	353	24	2010	2010	NUM
cord-002994-1zjrunzc	353	25	[	[	PUNCT
cord-002994-1zjrunzc	353	26	9	9	NUM
cord-002994-1zjrunzc	353	27	]	]	PUNCT
cord-002994-1zjrunzc	353	28	,	,	PUNCT
cord-002994-1zjrunzc	353	29	bagv	bagv	PROPN
cord-002994-1zjrunzc	353	30	adaptation	adaptation	PROPN
cord-002994-1zjrunzc	353	31	to	to	PART
cord-002994-1zjrunzc	353	32	vertebrate	vertebrate	ADJ
cord-002994-1zjrunzc	353	33	species	specie	NOUN
cord-002994-1zjrunzc	353	34	such	such	ADJ
cord-002994-1zjrunzc	353	35	as	as	ADP
cord-002994-1zjrunzc	353	36	birds	bird	NOUN
cord-002994-1zjrunzc	353	37	could	could	AUX
cord-002994-1zjrunzc	353	38	have	have	AUX
cord-002994-1zjrunzc	353	39	led	lead	VERB
cord-002994-1zjrunzc	353	40	to	to	ADP
cord-002994-1zjrunzc	353	41	an	an	DET
cord-002994-1zjrunzc	353	42	extension	extension	NOUN
cord-002994-1zjrunzc	353	43	of	of	ADP
cord-002994-1zjrunzc	353	44	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	353	45	to	to	ADP
cord-002994-1zjrunzc	353	46	other	other	ADJ
cord-002994-1zjrunzc	353	47	species	specie	NOUN
cord-002994-1zjrunzc	353	48	as	as	SCONJ
cord-002994-1zjrunzc	353	49	shown	show	VERB
cord-002994-1zjrunzc	353	50	in	in	ADP
cord-002994-1zjrunzc	353	51	a	a	DET
cord-002994-1zjrunzc	353	52	previous	previous	ADJ
cord-002994-1zjrunzc	353	53	virus	virus	NOUN
cord-002994-1zjrunzc	353	54	study	study	NOUN
cord-002994-1zjrunzc	354	1	[	[	PUNCT
cord-002994-1zjrunzc	354	2	46	46	NUM
cord-002994-1zjrunzc	354	3	]	]	PUNCT
cord-002994-1zjrunzc	354	4	.	.	PUNCT
cord-002994-1zjrunzc	355	1	interestingly	interestingly	ADV
cord-002994-1zjrunzc	355	2	,	,	PUNCT
cord-002994-1zjrunzc	355	3	west	west	PROPN
cord-002994-1zjrunzc	355	4	african	african	ADJ
cord-002994-1zjrunzc	355	5	bagv	bagv	PROPN
cord-002994-1zjrunzc	355	6	isolates	isolate	VERB
cord-002994-1zjrunzc	355	7	showed	show	VERB
cord-002994-1zjrunzc	355	8	a	a	DET
cord-002994-1zjrunzc	355	9	higher	high	ADJ
cord-002994-1zjrunzc	355	10	evidence	evidence	NOUN
cord-002994-1zjrunzc	355	11	of	of	ADP
cord-002994-1zjrunzc	355	12	codon	codon	NOUN
cord-002994-1zjrunzc	355	13	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	355	14	than	than	SCONJ
cord-002994-1zjrunzc	355	15	mbfvs	mbfvs	PROPN
cord-002994-1zjrunzc	355	16	well	well	ADV
cord-002994-1zjrunzc	355	17	known	know	VERB
cord-002994-1zjrunzc	355	18	to	to	PART
cord-002994-1zjrunzc	355	19	infect	infect	VERB
cord-002994-1zjrunzc	355	20	humans	human	NOUN
cord-002994-1zjrunzc	355	21	,	,	PUNCT
cord-002994-1zjrunzc	355	22	such	such	ADJ
cord-002994-1zjrunzc	355	23	as	as	ADP
cord-002994-1zjrunzc	355	24	wnv	wnv	PROPN
cord-002994-1zjrunzc	355	25	which	which	PRON
cord-002994-1zjrunzc	355	26	is	be	AUX
cord-002994-1zjrunzc	355	27	a	a	DET
cord-002994-1zjrunzc	355	28	major	major	ADJ
cord-002994-1zjrunzc	355	29	cause	cause	NOUN
cord-002994-1zjrunzc	355	30	of	of	ADP
cord-002994-1zjrunzc	355	31	human	human	ADJ
cord-002994-1zjrunzc	355	32	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	355	33	in	in	ADP
cord-002994-1zjrunzc	355	34	usa	usa	PROPN
cord-002994-1zjrunzc	355	35	and	and	CCONJ
cord-002994-1zjrunzc	355	36	responsible	responsible	ADJ
cord-002994-1zjrunzc	355	37	of	of	ADP
cord-002994-1zjrunzc	355	38	recent	recent	ADJ
cord-002994-1zjrunzc	355	39	outbreaks	outbreak	NOUN
cord-002994-1zjrunzc	355	40	in	in	ADP
cord-002994-1zjrunzc	355	41	europe	europe	PROPN
cord-002994-1zjrunzc	355	42	[	[	PUNCT
cord-002994-1zjrunzc	355	43	107	107	NUM
cord-002994-1zjrunzc	355	44	]	]	PUNCT
cord-002994-1zjrunzc	355	45	and	and	CCONJ
cord-002994-1zjrunzc	355	46	zikv	zikv	PROPN
cord-002994-1zjrunzc	355	47	associated	associate	VERB
cord-002994-1zjrunzc	355	48	with	with	ADP
cord-002994-1zjrunzc	355	49	microcephaly	microcephaly	NOUN
cord-002994-1zjrunzc	355	50	in	in	ADP
cord-002994-1zjrunzc	355	51	fetuses	fetus	NOUN
cord-002994-1zjrunzc	355	52	and	and	CCONJ
cord-002994-1zjrunzc	355	53	newborns	newborn	NOUN
cord-002994-1zjrunzc	355	54	during	during	ADP
cord-002994-1zjrunzc	355	55	the	the	DET
cord-002994-1zjrunzc	355	56	outbreak	outbreak	NOUN
cord-002994-1zjrunzc	355	57	in	in	ADP
cord-002994-1zjrunzc	355	58	brazil	brazil	PROPN
cord-002994-1zjrunzc	355	59	in	in	ADP
cord-002994-1zjrunzc	355	60	2015	2015	NUM
cord-002994-1zjrunzc	356	1	[	[	PUNCT
cord-002994-1zjrunzc	356	2	91	91	NUM
cord-002994-1zjrunzc	356	3	]	]	PUNCT
cord-002994-1zjrunzc	356	4	.	.	PUNCT
cord-002994-1zjrunzc	357	1	thus	thus	ADV
cord-002994-1zjrunzc	357	2	,	,	PUNCT
cord-002994-1zjrunzc	357	3	further	further	ADJ
cord-002994-1zjrunzc	357	4	comparison	comparison	NOUN
cord-002994-1zjrunzc	357	5	of	of	ADP
cord-002994-1zjrunzc	357	6	codon	codon	NOUN
cord-002994-1zjrunzc	357	7	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	357	8	indexes	index	NOUN
cord-002994-1zjrunzc	357	9	of	of	ADP
cord-002994-1zjrunzc	357	10	other	other	ADJ
cord-002994-1zjrunzc	357	11	bagv	bagv	PROPN
cord-002994-1zjrunzc	357	12	genomic	genomic	PROPN
cord-002994-1zjrunzc	357	13	regions	region	NOUN
cord-002994-1zjrunzc	357	14	,	,	PUNCT
cord-002994-1zjrunzc	357	15	such	such	ADJ
cord-002994-1zjrunzc	357	16	as	as	ADP
cord-002994-1zjrunzc	357	17	the	the	DET
cord-002994-1zjrunzc	357	18	3	3	NUM
cord-002994-1zjrunzc	357	19	utr	utr	NOUN
cord-002994-1zjrunzc	357	20	,	,	PUNCT
cord-002994-1zjrunzc	357	21	among	among	ADP
cord-002994-1zjrunzc	357	22	isolates	isolate	NOUN
cord-002994-1zjrunzc	357	23	that	that	PRON
cord-002994-1zjrunzc	357	24	differ	differ	VERB
cord-002994-1zjrunzc	357	25	in	in	ADP
cord-002994-1zjrunzc	357	26	biological	biological	ADJ
cord-002994-1zjrunzc	357	27	,	,	PUNCT
cord-002994-1zjrunzc	357	28	ecological	ecological	ADJ
cord-002994-1zjrunzc	357	29	,	,	PUNCT
cord-002994-1zjrunzc	357	30	and	and	CCONJ
cord-002994-1zjrunzc	357	31	genetic	genetic	ADJ
cord-002994-1zjrunzc	357	32	characteristics	characteristic	NOUN
cord-002994-1zjrunzc	357	33	could	could	AUX
cord-002994-1zjrunzc	357	34	help	help	VERB
cord-002994-1zjrunzc	357	35	to	to	PART
cord-002994-1zjrunzc	357	36	characterize	characterize	VERB
cord-002994-1zjrunzc	357	37	the	the	DET
cord-002994-1zjrunzc	357	38	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	357	39	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	357	40	of	of	ADP
cord-002994-1zjrunzc	357	41	bagv	bagv	PROPN
cord-002994-1zjrunzc	357	42	genomes	genome	NOUN
cord-002994-1zjrunzc	357	43	to	to	ADP
cord-002994-1zjrunzc	357	44	vertebrate	vertebrate	ADJ
cord-002994-1zjrunzc	357	45	hosts	host	NOUN
cord-002994-1zjrunzc	357	46	[	[	X
cord-002994-1zjrunzc	357	47	46	46	NUM
cord-002994-1zjrunzc	357	48	,	,	PUNCT
cord-002994-1zjrunzc	357	49	108	108	NUM
cord-002994-1zjrunzc	357	50	]	]	PUNCT
cord-002994-1zjrunzc	357	51	.	.	PUNCT
cord-002994-1zjrunzc	358	1	nevertheless	nevertheless	ADV
cord-002994-1zjrunzc	358	2	,	,	PUNCT
cord-002994-1zjrunzc	358	3	to	to	PART
cord-002994-1zjrunzc	358	4	ensure	ensure	VERB
cord-002994-1zjrunzc	358	5	the	the	DET
cord-002994-1zjrunzc	358	6	potential	potential	NOUN
cord-002994-1zjrunzc	358	7	of	of	ADP
cord-002994-1zjrunzc	358	8	bagv	bagv	PROPN
cord-002994-1zjrunzc	358	9	to	to	PART
cord-002994-1zjrunzc	358	10	be	be	AUX
cord-002994-1zjrunzc	358	11	involved	involve	VERB
cord-002994-1zjrunzc	358	12	in	in	ADP
cord-002994-1zjrunzc	358	13	human	human	ADJ
cord-002994-1zjrunzc	358	14	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	358	15	cases	case	NOUN
cord-002994-1zjrunzc	358	16	,	,	PUNCT
cord-002994-1zjrunzc	358	17	it	it	PRON
cord-002994-1zjrunzc	358	18	would	would	AUX
cord-002994-1zjrunzc	358	19	be	be	AUX
cord-002994-1zjrunzc	358	20	important	important	ADJ
cord-002994-1zjrunzc	358	21	to	to	PART
cord-002994-1zjrunzc	358	22	evaluate	evaluate	VERB
cord-002994-1zjrunzc	358	23	its	its	PRON
cord-002994-1zjrunzc	358	24	pathogenicity	pathogenicity	NOUN
cord-002994-1zjrunzc	358	25	on	on	ADP
cord-002994-1zjrunzc	358	26	human	human	ADJ
cord-002994-1zjrunzc	358	27	induced	induce	VERB
cord-002994-1zjrunzc	358	28	pluripotent	pluripotent	ADJ
cord-002994-1zjrunzc	358	29	stem	stem	NOUN
cord-002994-1zjrunzc	358	30	cell	cell	NOUN
cord-002994-1zjrunzc	358	31	lines	line	NOUN
cord-002994-1zjrunzc	358	32	(	(	PUNCT
cord-002994-1zjrunzc	358	33	ipsc	ipsc	PROPN
cord-002994-1zjrunzc	358	34	)	)	PUNCT
cord-002994-1zjrunzc	358	35	capable	capable	ADJ
cord-002994-1zjrunzc	358	36	of	of	ADP
cord-002994-1zjrunzc	358	37	differentiating	differentiate	VERB
cord-002994-1zjrunzc	358	38	into	into	ADP
cord-002994-1zjrunzc	358	39	brain	brain	NOUN
cord-002994-1zjrunzc	358	40	microvascular	microvascular	ADJ
cord-002994-1zjrunzc	358	41	endothelial	endothelial	ADJ
cord-002994-1zjrunzc	358	42	cells	cell	NOUN
cord-002994-1zjrunzc	358	43	(	(	PUNCT
cord-002994-1zjrunzc	358	44	bmecs	bmecs	PROPN
cord-002994-1zjrunzc	358	45	)	)	PUNCT
cord-002994-1zjrunzc	358	46	and	and	CCONJ
cord-002994-1zjrunzc	358	47	constituting	constitute	VERB
cord-002994-1zjrunzc	358	48	a	a	DET
cord-002994-1zjrunzc	358	49	robust	robust	ADJ
cord-002994-1zjrunzc	358	50	model	model	NOUN
cord-002994-1zjrunzc	358	51	of	of	ADP
cord-002994-1zjrunzc	358	52	the	the	DET
cord-002994-1zjrunzc	358	53	human	human	ADJ
cord-002994-1zjrunzc	358	54	blood	blood	NOUN
cord-002994-1zjrunzc	358	55	-	-	PUNCT
cord-002994-1zjrunzc	358	56	brain	brain	NOUN
cord-002994-1zjrunzc	358	57	barrier	barrier	NOUN
cord-002994-1zjrunzc	358	58	[	[	PUNCT
cord-002994-1zjrunzc	358	59	109	109	NUM
cord-002994-1zjrunzc	358	60	]	]	PUNCT
cord-002994-1zjrunzc	358	61	.	.	PUNCT
cord-002994-1zjrunzc	359	1	otherwise	otherwise	ADV
cord-002994-1zjrunzc	359	2	,	,	PUNCT
cord-002994-1zjrunzc	359	3	the	the	DET
cord-002994-1zjrunzc	359	4	ipsc	ipsc	ADJ
cord-002994-1zjrunzc	359	5	cells	cell	NOUN
cord-002994-1zjrunzc	359	6	can	can	AUX
cord-002994-1zjrunzc	359	7	also	also	ADV
cord-002994-1zjrunzc	359	8	generate	generate	VERB
cord-002994-1zjrunzc	359	9	primitive	primitive	ADJ
cord-002994-1zjrunzc	359	10	neural	neural	ADJ
cord-002994-1zjrunzc	359	11	stem	stem	NOUN
cord-002994-1zjrunzc	359	12	cells	cell	NOUN
cord-002994-1zjrunzc	359	13	(	(	PUNCT
cord-002994-1zjrunzc	359	14	nscs	nscs	PROPN
cord-002994-1zjrunzc	359	15	)	)	PUNCT
cord-002994-1zjrunzc	359	16	,	,	PUNCT
cord-002994-1zjrunzc	359	17	which	which	PRON
cord-002994-1zjrunzc	359	18	can	can	AUX
cord-002994-1zjrunzc	359	19	differentiate	differentiate	VERB
cord-002994-1zjrunzc	359	20	into	into	ADP
cord-002994-1zjrunzc	359	21	neurons	neuron	NOUN
cord-002994-1zjrunzc	359	22	,	,	PUNCT
cord-002994-1zjrunzc	359	23	astrocytes	astrocyte	NOUN
cord-002994-1zjrunzc	359	24	,	,	PUNCT
cord-002994-1zjrunzc	359	25	or	or	CCONJ
cord-002994-1zjrunzc	359	26	oligodendrocytes	oligodendrocyte	NOUN
cord-002994-1zjrunzc	359	27	[	[	PUNCT
cord-002994-1zjrunzc	359	28	110	110	NUM
cord-002994-1zjrunzc	359	29	]	]	PUNCT
cord-002994-1zjrunzc	359	30	.	.	PUNCT
cord-002994-1zjrunzc	360	1	these	these	DET
cord-002994-1zjrunzc	360	2	bagv	bagv	PROPN
cord-002994-1zjrunzc	360	3	sequences	sequence	VERB
cord-002994-1zjrunzc	360	4	data	datum	NOUN
cord-002994-1zjrunzc	360	5	obtained	obtain	VERB
cord-002994-1zjrunzc	360	6	in	in	ADP
cord-002994-1zjrunzc	360	7	our	our	PRON
cord-002994-1zjrunzc	360	8	study	study	NOUN
cord-002994-1zjrunzc	360	9	could	could	AUX
cord-002994-1zjrunzc	360	10	be	be	AUX
cord-002994-1zjrunzc	360	11	used	use	VERB
cord-002994-1zjrunzc	360	12	not	not	PART
cord-002994-1zjrunzc	360	13	only	only	ADV
cord-002994-1zjrunzc	360	14	in	in	ADP
cord-002994-1zjrunzc	360	15	future	future	ADJ
cord-002994-1zjrunzc	360	16	viral	viral	ADJ
cord-002994-1zjrunzc	360	17	studies	study	NOUN
cord-002994-1zjrunzc	360	18	,	,	PUNCT
cord-002994-1zjrunzc	360	19	but	but	CCONJ
cord-002994-1zjrunzc	360	20	also	also	ADV
cord-002994-1zjrunzc	360	21	in	in	ADP
cord-002994-1zjrunzc	360	22	development	development	NOUN
cord-002994-1zjrunzc	360	23	of	of	ADP
cord-002994-1zjrunzc	360	24	reverse	reverse	ADJ
cord-002994-1zjrunzc	360	25	genetic	genetic	ADJ
cord-002994-1zjrunzc	360	26	reagents	reagent	NOUN
cord-002994-1zjrunzc	360	27	or	or	CCONJ
cord-002994-1zjrunzc	360	28	reliable	reliable	ADJ
cord-002994-1zjrunzc	360	29	diagnostic	diagnostic	ADJ
cord-002994-1zjrunzc	360	30	tools	tool	NOUN
cord-002994-1zjrunzc	360	31	for	for	ADP
cord-002994-1zjrunzc	360	32	investigation	investigation	NOUN
cord-002994-1zjrunzc	360	33	of	of	ADP
cord-002994-1zjrunzc	360	34	this	this	DET
cord-002994-1zjrunzc	360	35	virus	virus	NOUN
cord-002994-1zjrunzc	360	36	in	in	ADP
cord-002994-1zjrunzc	360	37	human	human	ADJ
cord-002994-1zjrunzc	360	38	populations	population	NOUN
cord-002994-1zjrunzc	360	39	.	.	PUNCT
cord-002994-1zjrunzc	361	1	the	the	DET
cord-002994-1zjrunzc	361	2	following	follow	VERB
cord-002994-1zjrunzc	361	3	are	be	AUX
cord-002994-1zjrunzc	361	4	available	available	ADJ
cord-002994-1zjrunzc	361	5	online	online	ADV
cord-002994-1zjrunzc	361	6	at	at	ADP
cord-002994-1zjrunzc	361	7	http://www.mdpi.com/1999-4915/10/4/193/s1	http://www.mdpi.com/1999-4915/10/4/193/s1	PROPN
cord-002994-1zjrunzc	361	8	,	,	PUNCT
cord-002994-1zjrunzc	361	9	figure	figure	NOUN
cord-002994-1zjrunzc	361	10	s1	s1	PROPN
cord-002994-1zjrunzc	361	11	:	:	PUNCT
cord-002994-1zjrunzc	361	12	sequences	sequence	NOUN
cord-002994-1zjrunzc	361	13	of	of	ADP
cord-002994-1zjrunzc	361	14	conserved	conserved	ADJ
cord-002994-1zjrunzc	361	15	structural	structural	ADJ
cord-002994-1zjrunzc	361	16	rna	rna	PROPN
cord-002994-1zjrunzc	361	17	domains	domain	NOUN
cord-002994-1zjrunzc	361	18	identified	identify	VERB
cord-002994-1zjrunzc	361	19	on	on	ADP
cord-002994-1zjrunzc	361	20	the	the	DET
cord-002994-1zjrunzc	361	21	3	3	NUM
cord-002994-1zjrunzc	361	22	utr	utr	NOUN
cord-002994-1zjrunzc	361	23	of	of	ADP
cord-002994-1zjrunzc	361	24	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	361	25	genomes	genome	NOUN
cord-002994-1zjrunzc	361	26	used	use	VERB
cord-002994-1zjrunzc	361	27	in	in	ADP
cord-002994-1zjrunzc	361	28	this	this	DET
cord-002994-1zjrunzc	361	29	study	study	NOUN
cord-002994-1zjrunzc	361	30	.	.	PUNCT
cord-002994-1zjrunzc	362	1	bag	bag	NOUN
cord-002994-1zjrunzc	362	2	)	)	PUNCT
cord-002994-1zjrunzc	362	3	strain	strain	NOUN
cord-002994-1zjrunzc	362	4	:	:	PUNCT
cord-002994-1zjrunzc	362	5	dak	dak	PROPN
cord-002994-1zjrunzc	362	6	ar	ar	PROPN
cord-002994-1zjrunzc	362	7	b	b	PROPN
cord-002994-1zjrunzc	362	8	209	209	NUM
cord-002994-1zjrunzc	362	9	full	full	ADJ
cord-002994-1zjrunzc	362	10	-	-	PUNCT
cord-002994-1zjrunzc	362	11	length	length	NOUN
cord-002994-1zjrunzc	362	12	sequencing	sequence	VERB
cord-002994-1zjrunzc	362	13	and	and	CCONJ
cord-002994-1zjrunzc	362	14	genomic	genomic	ADJ
cord-002994-1zjrunzc	362	15	characterization	characterization	NOUN
cord-002994-1zjrunzc	362	16	of	of	ADP
cord-002994-1zjrunzc	362	17	bagaza	bagaza	NOUN
cord-002994-1zjrunzc	362	18	,	,	PUNCT
cord-002994-1zjrunzc	362	19	kedougou	kedougou	NOUN
cord-002994-1zjrunzc	362	20	,	,	PUNCT
cord-002994-1zjrunzc	362	21	and	and	CCONJ
cord-002994-1zjrunzc	362	22	zika	zika	NOUN
cord-002994-1zjrunzc	362	23	viruses	viruse	VERB
cord-002994-1zjrunzc	362	24	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	362	25	vectors	vector	NOUN
cord-002994-1zjrunzc	362	26	of	of	ADP
cord-002994-1zjrunzc	362	27	the	the	DET
cord-002994-1zjrunzc	362	28	1998	1998	NUM
cord-002994-1zjrunzc	362	29	-	-	SYM
cord-002994-1zjrunzc	362	30	1999	1999	NUM
cord-002994-1zjrunzc	362	31	outbreak	outbreak	NOUN
cord-002994-1zjrunzc	362	32	of	of	ADP
cord-002994-1zjrunzc	362	33	rift	rift	NOUN
cord-002994-1zjrunzc	362	34	valley	valley	NOUN
cord-002994-1zjrunzc	362	35	fever	fever	NOUN
cord-002994-1zjrunzc	362	36	and	and	CCONJ
cord-002994-1zjrunzc	362	37	other	other	ADJ
cord-002994-1zjrunzc	362	38	arboviruses	arbovirus	NOUN
cord-002994-1zjrunzc	362	39	(	(	PUNCT
cord-002994-1zjrunzc	362	40	bagaza	bagaza	NOUN
cord-002994-1zjrunzc	362	41	,	,	PUNCT
cord-002994-1zjrunzc	362	42	sanar	sanar	NOUN
cord-002994-1zjrunzc	362	43	,	,	PUNCT
cord-002994-1zjrunzc	362	44	wesselsbron	wesselsbron	NOUN
cord-002994-1zjrunzc	362	45	and	and	CCONJ
cord-002994-1zjrunzc	362	46	west	west	PROPN
cord-002994-1zjrunzc	362	47	nile	nile	PROPN
cord-002994-1zjrunzc	362	48	)	)	PUNCT
cord-002994-1zjrunzc	362	49	in	in	ADP
cord-002994-1zjrunzc	362	50	mauritania	mauritania	PROPN
cord-002994-1zjrunzc	362	51	and	and	CCONJ
cord-002994-1zjrunzc	362	52	senegal	senegal	ADJ
cord-002994-1zjrunzc	362	53	isolations	isolation	NOUN
cord-002994-1zjrunzc	362	54	of	of	ADP
cord-002994-1zjrunzc	362	55	west	west	PROPN
cord-002994-1zjrunzc	362	56	nile	nile	PROPN
cord-002994-1zjrunzc	362	57	and	and	CCONJ
cord-002994-1zjrunzc	362	58	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	362	59	viruses	viruse	VERB
cord-002994-1zjrunzc	362	60	from	from	ADP
cord-002994-1zjrunzc	362	61	mosquitoes	mosquito	NOUN
cord-002994-1zjrunzc	362	62	(	(	PUNCT
cord-002994-1zjrunzc	362	63	diptera	diptera	PROPN
cord-002994-1zjrunzc	362	64	:	:	PUNCT
cord-002994-1zjrunzc	362	65	culicidae	culicidae	PROPN
cord-002994-1zjrunzc	362	66	)	)	PUNCT
cord-002994-1zjrunzc	362	67	in	in	ADP
cord-002994-1zjrunzc	362	68	central	central	ADJ
cord-002994-1zjrunzc	362	69	senegal	senegal	ADJ
cord-002994-1zjrunzc	362	70	(	(	PUNCT
cord-002994-1zjrunzc	362	71	ferlo	ferlo	PROPN
cord-002994-1zjrunzc	362	72	)	)	PUNCT
cord-002994-1zjrunzc	362	73	arbovirus	arbovirus	NOUN
cord-002994-1zjrunzc	362	74	isolations	isolation	NOUN
cord-002994-1zjrunzc	362	75	from	from	ADP
cord-002994-1zjrunzc	362	76	mosquitoes	mosquito	NOUN
cord-002994-1zjrunzc	362	77	collected	collect	VERB
cord-002994-1zjrunzc	362	78	during	during	ADP
cord-002994-1zjrunzc	362	79	1988	1988	NUM
cord-002994-1zjrunzc	362	80	in	in	ADP
cord-002994-1zjrunzc	362	81	the	the	DET
cord-002994-1zjrunzc	362	82	senegal	senegal	PROPN
cord-002994-1zjrunzc	362	83	river	river	NOUN
cord-002994-1zjrunzc	362	84	basin	basin	NOUN
cord-002994-1zjrunzc	362	85	genetic	genetic	ADJ
cord-002994-1zjrunzc	362	86	characterization	characterization	NOUN
cord-002994-1zjrunzc	362	87	of	of	ADP
cord-002994-1zjrunzc	362	88	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	362	89	virus	virus	PROPN
cord-002994-1zjrunzc	362	90	(	(	PUNCT
cord-002994-1zjrunzc	362	91	bagv	bagv	PROPN
cord-002994-1zjrunzc	362	92	)	)	PUNCT
cord-002994-1zjrunzc	362	93	isolated	isolate	VERB
cord-002994-1zjrunzc	362	94	in	in	ADP
cord-002994-1zjrunzc	362	95	india	india	PROPN
cord-002994-1zjrunzc	362	96	and	and	CCONJ
cord-002994-1zjrunzc	362	97	evidence	evidence	NOUN
cord-002994-1zjrunzc	362	98	of	of	ADP
cord-002994-1zjrunzc	362	99	anti	anti	ADJ
cord-002994-1zjrunzc	362	100	-	-	ADJ
cord-002994-1zjrunzc	362	101	bagv	bagv	ADJ
cord-002994-1zjrunzc	362	102	antibodies	antibody	NOUN
cord-002994-1zjrunzc	362	103	in	in	ADP
cord-002994-1zjrunzc	362	104	sera	sera	NOUN
cord-002994-1zjrunzc	362	105	collected	collect	VERB
cord-002994-1zjrunzc	362	106	from	from	ADP
cord-002994-1zjrunzc	362	107	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	362	108	patients	patient	NOUN
cord-002994-1zjrunzc	362	109	preliminary	preliminary	ADJ
cord-002994-1zjrunzc	362	110	findings	finding	NOUN
cord-002994-1zjrunzc	362	111	on	on	ADP
cord-002994-1zjrunzc	362	112	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	362	113	virus	virus	PROPN
cord-002994-1zjrunzc	362	114	(	(	PUNCT
cord-002994-1zjrunzc	362	115	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	362	116	:	:	PUNCT
cord-002994-1zjrunzc	362	117	flaviviridae	flaviviridae	PROPN
cord-002994-1zjrunzc	362	118	)	)	PUNCT
cord-002994-1zjrunzc	362	119	growth	growth	NOUN
cord-002994-1zjrunzc	362	120	kinetics	kinetic	NOUN
cord-002994-1zjrunzc	362	121	,	,	PUNCT
cord-002994-1zjrunzc	362	122	transmission	transmission	NOUN
cord-002994-1zjrunzc	362	123	potential	potential	ADJ
cord-002994-1zjrunzc	362	124	transovarial	transovarial	ADJ
cord-002994-1zjrunzc	362	125	transmission	transmission	NOUN
cord-002994-1zjrunzc	362	126	in	in	ADP
cord-002994-1zjrunzc	362	127	three	three	NUM
cord-002994-1zjrunzc	362	128	species	specie	NOUN
cord-002994-1zjrunzc	362	129	of	of	ADP
cord-002994-1zjrunzc	362	130	mosquitoes	mosquitoes	PROPN
cord-002994-1zjrunzc	362	131	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	362	132	virus	virus	PROPN
cord-002994-1zjrunzc	362	133	in	in	ADP
cord-002994-1zjrunzc	362	134	partridges	partridge	NOUN
cord-002994-1zjrunzc	362	135	and	and	CCONJ
cord-002994-1zjrunzc	362	136	pheasants	pheasant	NOUN
cord-002994-1zjrunzc	362	137	monitoring	monitor	VERB
cord-002994-1zjrunzc	362	138	of	of	ADP
cord-002994-1zjrunzc	362	139	the	the	DET
cord-002994-1zjrunzc	362	140	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	362	141	virus	virus	PROPN
cord-002994-1zjrunzc	362	142	epidemic	epidemic	NOUN
cord-002994-1zjrunzc	362	143	in	in	ADP
cord-002994-1zjrunzc	362	144	wild	wild	ADJ
cord-002994-1zjrunzc	362	145	bird	bird	NOUN
cord-002994-1zjrunzc	362	146	species	specie	NOUN
cord-002994-1zjrunzc	362	147	in	in	ADP
cord-002994-1zjrunzc	362	148	spain	spain	PROPN
cord-002994-1zjrunzc	362	149	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	362	150	virus	virus	PROPN
cord-002994-1zjrunzc	362	151	and	and	CCONJ
cord-002994-1zjrunzc	362	152	israel	israel	PROPN
cord-002994-1zjrunzc	362	153	turkey	turkey	PROPN
cord-002994-1zjrunzc	362	154	meningoencephalomyelitis	meningoencephalomyelitis	PROPN
cord-002994-1zjrunzc	362	155	virus	virus	PROPN
cord-002994-1zjrunzc	362	156	are	be	AUX
cord-002994-1zjrunzc	362	157	a	a	DET
cord-002994-1zjrunzc	362	158	single	single	ADJ
cord-002994-1zjrunzc	362	159	virus	virus	NOUN
cord-002994-1zjrunzc	362	160	species	species	PROPN
cord-002994-1zjrunzc	362	161	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	362	162	virus	virus	PROPN
cord-002994-1zjrunzc	362	163	inhibits	inhibit	VERB
cord-002994-1zjrunzc	362	164	japanese	japanese	ADJ
cord-002994-1zjrunzc	362	165	encephalitis	encephalitis	PROPN
cord-002994-1zjrunzc	362	166	&	&	CCONJ
cord-002994-1zjrunzc	362	167	west	west	PROPN
cord-002994-1zjrunzc	362	168	nile	nile	PROPN
cord-002994-1zjrunzc	362	169	virus	virus	PROPN
cord-002994-1zjrunzc	362	170	replication	replication	NOUN
cord-002994-1zjrunzc	362	171	in	in	ADP
cord-002994-1zjrunzc	362	172	culex	culex	PROPN
cord-002994-1zjrunzc	362	173	tritaeniorhynchus	tritaeniorhynchus	PROPN
cord-002994-1zjrunzc	362	174	&	&	CCONJ
cord-002994-1zjrunzc	362	175	cx	cx	PROPN
cord-002994-1zjrunzc	362	176	.	.	PROPN
cord-002994-1zjrunzc	363	1	quinquefasciatus	quinquefasciatus	PROPN
cord-002994-1zjrunzc	363	2	mosquitoes	mosquitoes	PROPN
cord-002994-1zjrunzc	363	3	natural	natural	PROPN
cord-002994-1zjrunzc	363	4	bagaza	bagaza	PROPN
cord-002994-1zjrunzc	363	5	virus	virus	PROPN
cord-002994-1zjrunzc	363	6	infection	infection	NOUN
cord-002994-1zjrunzc	363	7	in	in	ADP
cord-002994-1zjrunzc	363	8	game	game	NOUN
cord-002994-1zjrunzc	363	9	birds	bird	NOUN
cord-002994-1zjrunzc	363	10	in	in	ADP
cord-002994-1zjrunzc	363	11	southern	southern	ADJ
cord-002994-1zjrunzc	363	12	spain	spain	PROPN
cord-002994-1zjrunzc	363	13	mega7	mega7	NOUN
cord-002994-1zjrunzc	363	14	:	:	PUNCT
cord-002994-1zjrunzc	363	15	molecular	molecular	ADJ
cord-002994-1zjrunzc	363	16	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	363	17	genetics	genetic	NOUN
cord-002994-1zjrunzc	363	18	analysis	analysis	NOUN
cord-002994-1zjrunzc	363	19	version	version	NOUN
cord-002994-1zjrunzc	363	20	7.0	7.0	NUM
cord-002994-1zjrunzc	363	21	continuous	continuous	ADJ
cord-002994-1zjrunzc	363	22	cell	cell	NOUN
cord-002994-1zjrunzc	363	23	lines	line	NOUN
cord-002994-1zjrunzc	363	24	and	and	CCONJ
cord-002994-1zjrunzc	363	25	immune	immune	ADJ
cord-002994-1zjrunzc	363	26	ascitic	ascitic	ADJ
cord-002994-1zjrunzc	363	27	fluid	fluid	ADJ
cord-002994-1zjrunzc	363	28	pools	pool	NOUN
cord-002994-1zjrunzc	363	29	in	in	ADP
cord-002994-1zjrunzc	363	30	arbovirus	arbovirus	NOUN
cord-002994-1zjrunzc	363	31	detection	detection	NOUN
cord-002994-1zjrunzc	363	32	development	development	NOUN
cord-002994-1zjrunzc	363	33	of	of	ADP
cord-002994-1zjrunzc	363	34	one	one	NUM
cord-002994-1zjrunzc	363	35	-	-	PUNCT
cord-002994-1zjrunzc	363	36	step	step	NOUN
cord-002994-1zjrunzc	363	37	quantitative	quantitative	ADJ
cord-002994-1zjrunzc	363	38	reverse	reverse	ADJ
cord-002994-1zjrunzc	363	39	transcription	transcription	NOUN
cord-002994-1zjrunzc	363	40	pcr	pcr	NOUN
cord-002994-1zjrunzc	363	41	for	for	ADP
cord-002994-1zjrunzc	363	42	the	the	DET
cord-002994-1zjrunzc	363	43	rapid	rapid	ADJ
cord-002994-1zjrunzc	363	44	detection	detection	NOUN
cord-002994-1zjrunzc	363	45	of	of	ADP
cord-002994-1zjrunzc	363	46	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	363	47	unipro	unipro	ADJ
cord-002994-1zjrunzc	363	48	ugene	ugene	NOUN
cord-002994-1zjrunzc	363	49	:	:	PUNCT
cord-002994-1zjrunzc	363	50	a	a	DET
cord-002994-1zjrunzc	363	51	unified	unified	ADJ
cord-002994-1zjrunzc	363	52	bioinformatics	bioinformatics	NOUN
cord-002994-1zjrunzc	363	53	toolkit	toolkit	NOUN
cord-002994-1zjrunzc	363	54	multiple	multiple	ADJ
cord-002994-1zjrunzc	363	55	sequence	sequence	NOUN
cord-002994-1zjrunzc	363	56	alignment	alignment	NOUN
cord-002994-1zjrunzc	363	57	with	with	ADP
cord-002994-1zjrunzc	363	58	high	high	ADJ
cord-002994-1zjrunzc	363	59	accuracy	accuracy	NOUN
cord-002994-1zjrunzc	363	60	and	and	CCONJ
cord-002994-1zjrunzc	363	61	high	high	ADJ
cord-002994-1zjrunzc	363	62	throughput	throughput	NOUN
cord-002994-1zjrunzc	363	63	divein	divein	PROPN
cord-002994-1zjrunzc	363	64	:	:	PUNCT
cord-002994-1zjrunzc	363	65	a	a	DET
cord-002994-1zjrunzc	363	66	web	web	NOUN
cord-002994-1zjrunzc	363	67	server	server	NOUN
cord-002994-1zjrunzc	363	68	to	to	PART
cord-002994-1zjrunzc	363	69	analyze	analyze	VERB
cord-002994-1zjrunzc	363	70	phylogenies	phylogeny	NOUN
cord-002994-1zjrunzc	363	71	,	,	PUNCT
cord-002994-1zjrunzc	363	72	sequence	sequence	NOUN
cord-002994-1zjrunzc	363	73	divergence	divergence	NOUN
cord-002994-1zjrunzc	363	74	,	,	PUNCT
cord-002994-1zjrunzc	363	75	diversity	diversity	NOUN
cord-002994-1zjrunzc	363	76	,	,	PUNCT
cord-002994-1zjrunzc	363	77	and	and	CCONJ
cord-002994-1zjrunzc	363	78	informative	informative	ADJ
cord-002994-1zjrunzc	363	79	sites	site	NOUN
cord-002994-1zjrunzc	363	80	prediction	prediction	NOUN
cord-002994-1zjrunzc	363	81	of	of	ADP
cord-002994-1zjrunzc	363	82	n	n	NOUN
cord-002994-1zjrunzc	363	83	-	-	PUNCT
cord-002994-1zjrunzc	363	84	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	363	85	sites	site	NOUN
cord-002994-1zjrunzc	363	86	in	in	ADP
cord-002994-1zjrunzc	363	87	human	human	ADJ
cord-002994-1zjrunzc	363	88	proteins	protein	NOUN
cord-002994-1zjrunzc	363	89	the	the	DET
cord-002994-1zjrunzc	363	90	rnaz	rnaz	PROPN
cord-002994-1zjrunzc	363	91	web	web	NOUN
cord-002994-1zjrunzc	363	92	server	server	NOUN
cord-002994-1zjrunzc	363	93	:	:	PUNCT
cord-002994-1zjrunzc	363	94	prediction	prediction	NOUN
cord-002994-1zjrunzc	363	95	of	of	ADP
cord-002994-1zjrunzc	363	96	thermodynamically	thermodynamically	ADV
cord-002994-1zjrunzc	363	97	stable	stable	ADJ
cord-002994-1zjrunzc	363	98	and	and	CCONJ
cord-002994-1zjrunzc	363	99	evolutionarily	evolutionarily	ADV
cord-002994-1zjrunzc	363	100	conserved	conserve	VERB
cord-002994-1zjrunzc	363	101	rna	rna	PROPN
cord-002994-1zjrunzc	363	102	structures	structure	NOUN
cord-002994-1zjrunzc	363	103	the	the	DET
cord-002994-1zjrunzc	363	104	vienna	vienna	PROPN
cord-002994-1zjrunzc	363	105	rna	rna	PROPN
cord-002994-1zjrunzc	363	106	websuite	websuite	NOUN
cord-002994-1zjrunzc	363	107	improved	improve	VERB
cord-002994-1zjrunzc	363	108	consensus	consensus	NOUN
cord-002994-1zjrunzc	363	109	structure	structure	NOUN
cord-002994-1zjrunzc	363	110	prediction	prediction	NOUN
cord-002994-1zjrunzc	363	111	for	for	ADP
cord-002994-1zjrunzc	363	112	rna	rna	NOUN
cord-002994-1zjrunzc	363	113	alignments	alignment	NOUN
cord-002994-1zjrunzc	363	114	incorporating	incorporate	VERB
cord-002994-1zjrunzc	363	115	chemical	chemical	NOUN
cord-002994-1zjrunzc	363	116	modification	modification	NOUN
cord-002994-1zjrunzc	363	117	constraints	constraint	NOUN
cord-002994-1zjrunzc	363	118	into	into	ADP
cord-002994-1zjrunzc	363	119	a	a	DET
cord-002994-1zjrunzc	363	120	dynamic	dynamic	ADJ
cord-002994-1zjrunzc	363	121	programming	programming	NOUN
cord-002994-1zjrunzc	363	122	algorithm	algorithm	NOUN
cord-002994-1zjrunzc	363	123	for	for	ADP
cord-002994-1zjrunzc	363	124	prediction	prediction	NOUN
cord-002994-1zjrunzc	363	125	of	of	ADP
cord-002994-1zjrunzc	363	126	rna	rna	PROPN
cord-002994-1zjrunzc	363	127	secondary	secondary	ADJ
cord-002994-1zjrunzc	363	128	structure	structure	NOUN
cord-002994-1zjrunzc	363	129	does	do	AUX
cord-002994-1zjrunzc	363	130	the	the	DET
cord-002994-1zjrunzc	363	131	choice	choice	NOUN
cord-002994-1zjrunzc	363	132	of	of	ADP
cord-002994-1zjrunzc	363	133	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	363	134	substitution	substitution	NOUN
cord-002994-1zjrunzc	363	135	models	model	NOUN
cord-002994-1zjrunzc	363	136	matter	matter	VERB
cord-002994-1zjrunzc	363	137	topologically	topologically	ADV
cord-002994-1zjrunzc	363	138	?	?	PUNCT
cord-002994-1zjrunzc	364	1	bmc	bmc	PROPN
cord-002994-1zjrunzc	364	2	bioinform	bioinform	PROPN
cord-002994-1zjrunzc	364	3	fasttree	fasttree	NOUN
cord-002994-1zjrunzc	364	4	2	2	NUM
cord-002994-1zjrunzc	364	5	:	:	PUNCT
cord-002994-1zjrunzc	364	6	approximately	approximately	ADV
cord-002994-1zjrunzc	364	7	maximum	maximum	ADJ
cord-002994-1zjrunzc	364	8	-	-	PUNCT
cord-002994-1zjrunzc	364	9	likelihood	likelihood	NOUN
cord-002994-1zjrunzc	364	10	trees	tree	NOUN
cord-002994-1zjrunzc	364	11	for	for	ADP
cord-002994-1zjrunzc	364	12	large	large	ADJ
cord-002994-1zjrunzc	364	13	alignments	alignment	NOUN
cord-002994-1zjrunzc	364	14	rdp4	rdp4	NOUN
cord-002994-1zjrunzc	364	15	:	:	PUNCT
cord-002994-1zjrunzc	364	16	detection	detection	NOUN
cord-002994-1zjrunzc	364	17	and	and	CCONJ
cord-002994-1zjrunzc	364	18	analysis	analysis	NOUN
cord-002994-1zjrunzc	364	19	of	of	ADP
cord-002994-1zjrunzc	364	20	recombination	recombination	NOUN
cord-002994-1zjrunzc	364	21	patterns	pattern	NOUN
cord-002994-1zjrunzc	364	22	in	in	ADP
cord-002994-1zjrunzc	364	23	virus	virus	NOUN
cord-002994-1zjrunzc	364	24	genomes	genome	VERB
cord-002994-1zjrunzc	364	25	multiple	multiple	ADJ
cord-002994-1zjrunzc	364	26	significance	significance	NOUN
cord-002994-1zjrunzc	364	27	tests	test	NOUN
cord-002994-1zjrunzc	364	28	:	:	PUNCT
cord-002994-1zjrunzc	364	29	the	the	DET
cord-002994-1zjrunzc	364	30	bonferroni	bonferroni	NOUN
cord-002994-1zjrunzc	364	31	method	method	NOUN
cord-002994-1zjrunzc	364	32	hypothesis	hypothesis	NOUN
cord-002994-1zjrunzc	364	33	testing	testing	NOUN
cord-002994-1zjrunzc	364	34	using	use	VERB
cord-002994-1zjrunzc	364	35	phylogenies	phylogeny	NOUN
cord-002994-1zjrunzc	364	36	the	the	DET
cord-002994-1zjrunzc	364	37	effect	effect	NOUN
cord-002994-1zjrunzc	364	38	of	of	ADP
cord-002994-1zjrunzc	364	39	recombination	recombination	NOUN
cord-002994-1zjrunzc	364	40	on	on	ADP
cord-002994-1zjrunzc	364	41	the	the	DET
cord-002994-1zjrunzc	364	42	accuracy	accuracy	NOUN
cord-002994-1zjrunzc	364	43	of	of	ADP
cord-002994-1zjrunzc	364	44	phylogeny	phylogeny	PROPN
cord-002994-1zjrunzc	364	45	estimation	estimation	NOUN
cord-002994-1zjrunzc	364	46	fubar	fubar	PROPN
cord-002994-1zjrunzc	364	47	:	:	PUNCT
cord-002994-1zjrunzc	364	48	a	a	DET
cord-002994-1zjrunzc	364	49	fast	fast	ADJ
cord-002994-1zjrunzc	364	50	,	,	PUNCT
cord-002994-1zjrunzc	364	51	unconstrained	unconstrained	ADJ
cord-002994-1zjrunzc	364	52	bayesian	bayesian	NOUN
cord-002994-1zjrunzc	364	53	approximation	approximation	NOUN
cord-002994-1zjrunzc	364	54	for	for	ADP
cord-002994-1zjrunzc	364	55	inferring	infer	VERB
cord-002994-1zjrunzc	364	56	selection	selection	NOUN
cord-002994-1zjrunzc	364	57	improving	improve	VERB
cord-002994-1zjrunzc	364	58	the	the	DET
cord-002994-1zjrunzc	364	59	accuracy	accuracy	NOUN
cord-002994-1zjrunzc	364	60	of	of	ADP
cord-002994-1zjrunzc	364	61	demographic	demographic	ADJ
cord-002994-1zjrunzc	364	62	and	and	CCONJ
cord-002994-1zjrunzc	364	63	molecular	molecular	ADJ
cord-002994-1zjrunzc	364	64	clock	clock	NOUN
cord-002994-1zjrunzc	364	65	model	model	NOUN
cord-002994-1zjrunzc	364	66	comparison	comparison	NOUN
cord-002994-1zjrunzc	364	67	while	while	SCONJ
cord-002994-1zjrunzc	364	68	accommodating	accommodate	VERB
cord-002994-1zjrunzc	364	69	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	364	70	uncertainty	uncertainty	NOUN
cord-002994-1zjrunzc	364	71	accurate	accurate	ADJ
cord-002994-1zjrunzc	364	72	model	model	NOUN
cord-002994-1zjrunzc	364	73	selection	selection	NOUN
cord-002994-1zjrunzc	364	74	of	of	ADP
cord-002994-1zjrunzc	364	75	relaxed	relaxed	ADJ
cord-002994-1zjrunzc	364	76	molecular	molecular	ADJ
cord-002994-1zjrunzc	364	77	clocks	clock	NOUN
cord-002994-1zjrunzc	364	78	in	in	ADP
cord-002994-1zjrunzc	364	79	bayesian	bayesian	ADJ
cord-002994-1zjrunzc	364	80	phylogenetics	phylogenetic	NOUN
cord-002994-1zjrunzc	364	81	bayesian	bayesian	NOUN
cord-002994-1zjrunzc	364	82	phylogenetics	phylogenetic	NOUN
cord-002994-1zjrunzc	364	83	with	with	ADP
cord-002994-1zjrunzc	364	84	beauti	beauti	PROPN
cord-002994-1zjrunzc	364	85	and	and	CCONJ
cord-002994-1zjrunzc	364	86	the	the	DET
cord-002994-1zjrunzc	364	87	beast	beast	NOUN
cord-002994-1zjrunzc	364	88	1.7	1.7	NUM
cord-002994-1zjrunzc	364	89	the	the	DET
cord-002994-1zjrunzc	364	90	codon	codon	PROPN
cord-002994-1zjrunzc	364	91	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	364	92	index	index	NOUN
cord-002994-1zjrunzc	364	93	-	-	PUNCT
cord-002994-1zjrunzc	364	94	a	a	DET
cord-002994-1zjrunzc	364	95	measure	measure	NOUN
cord-002994-1zjrunzc	364	96	of	of	ADP
cord-002994-1zjrunzc	364	97	directional	directional	ADJ
cord-002994-1zjrunzc	364	98	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	364	99	codon	codon	NOUN
cord-002994-1zjrunzc	364	100	usage	usage	NOUN
cord-002994-1zjrunzc	364	101	bias	bias	NOUN
cord-002994-1zjrunzc	364	102	,	,	PUNCT
cord-002994-1zjrunzc	364	103	and	and	CCONJ
cord-002994-1zjrunzc	364	104	its	its	PRON
cord-002994-1zjrunzc	364	105	potential	potential	ADJ
cord-002994-1zjrunzc	364	106	applications	application	NOUN
cord-002994-1zjrunzc	364	107	codon	codon	NOUN
cord-002994-1zjrunzc	364	108	usage	usage	NOUN
cord-002994-1zjrunzc	364	109	in	in	ADP
cord-002994-1zjrunzc	364	110	yeast	yeast	NOUN
cord-002994-1zjrunzc	364	111	:	:	PUNCT
cord-002994-1zjrunzc	364	112	cluster	cluster	NOUN
cord-002994-1zjrunzc	364	113	analysis	analysis	NOUN
cord-002994-1zjrunzc	364	114	clearly	clearly	ADV
cord-002994-1zjrunzc	364	115	differentiates	differentiate	VERB
cord-002994-1zjrunzc	364	116	highly	highly	ADV
cord-002994-1zjrunzc	364	117	and	and	CCONJ
cord-002994-1zjrunzc	364	118	lowly	lowly	ADV
cord-002994-1zjrunzc	364	119	expressed	express	VERB
cord-002994-1zjrunzc	364	120	genes	gene	NOUN
cord-002994-1zjrunzc	364	121	spread	spread	VERB
cord-002994-1zjrunzc	364	122	of	of	ADP
cord-002994-1zjrunzc	364	123	the	the	DET
cord-002994-1zjrunzc	364	124	pandemic	pandemic	ADJ
cord-002994-1zjrunzc	364	125	zika	zika	NOUN
cord-002994-1zjrunzc	364	126	virus	virus	NOUN
cord-002994-1zjrunzc	364	127	lineage	lineage	NOUN
cord-002994-1zjrunzc	364	128	is	be	AUX
cord-002994-1zjrunzc	364	129	associated	associate	VERB
cord-002994-1zjrunzc	364	130	with	with	ADP
cord-002994-1zjrunzc	364	131	ns1	ns1	PROPN
cord-002994-1zjrunzc	364	132	codon	codon	PROPN
cord-002994-1zjrunzc	364	133	usage	usage	NOUN
cord-002994-1zjrunzc	364	134	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	364	135	in	in	ADP
cord-002994-1zjrunzc	364	136	humans	human	NOUN
cord-002994-1zjrunzc	364	137	importance	importance	NOUN
cord-002994-1zjrunzc	364	138	of	of	ADP
cord-002994-1zjrunzc	364	139	codon	codon	NOUN
cord-002994-1zjrunzc	364	140	usage	usage	NOUN
cord-002994-1zjrunzc	364	141	for	for	ADP
cord-002994-1zjrunzc	364	142	the	the	DET
cord-002994-1zjrunzc	364	143	temporal	temporal	ADJ
cord-002994-1zjrunzc	364	144	regulation	regulation	NOUN
cord-002994-1zjrunzc	364	145	of	of	ADP
cord-002994-1zjrunzc	364	146	viral	viral	ADJ
cord-002994-1zjrunzc	364	147	gene	gene	NOUN
cord-002994-1zjrunzc	364	148	expression	expression	NOUN
cord-002994-1zjrunzc	364	149	genomic	genomic	ADJ
cord-002994-1zjrunzc	364	150	analysis	analysis	NOUN
cord-002994-1zjrunzc	364	151	of	of	ADP
cord-002994-1zjrunzc	364	152	codon	codon	NOUN
cord-002994-1zjrunzc	364	153	usage	usage	NOUN
cord-002994-1zjrunzc	364	154	shows	show	VERB
cord-002994-1zjrunzc	364	155	influence	influence	NOUN
cord-002994-1zjrunzc	364	156	of	of	ADP
cord-002994-1zjrunzc	364	157	mutation	mutation	NOUN
cord-002994-1zjrunzc	364	158	pressure	pressure	NOUN
cord-002994-1zjrunzc	364	159	,	,	PUNCT
cord-002994-1zjrunzc	364	160	natural	natural	ADJ
cord-002994-1zjrunzc	364	161	selection	selection	NOUN
cord-002994-1zjrunzc	364	162	,	,	PUNCT
cord-002994-1zjrunzc	364	163	and	and	CCONJ
cord-002994-1zjrunzc	364	164	host	host	NOUN
cord-002994-1zjrunzc	364	165	features	feature	VERB
cord-002994-1zjrunzc	364	166	on	on	ADP
cord-002994-1zjrunzc	364	167	marburg	marburg	PROPN
cord-002994-1zjrunzc	364	168	virus	virus	PROPN
cord-002994-1zjrunzc	364	169	evolution	evolution	NOUN
cord-002994-1zjrunzc	364	170	a	a	DET
cord-002994-1zjrunzc	364	171	combined	combine	VERB
cord-002994-1zjrunzc	364	172	set	set	NOUN
cord-002994-1zjrunzc	364	173	of	of	ADP
cord-002994-1zjrunzc	364	174	tools	tool	NOUN
cord-002994-1zjrunzc	364	175	to	to	PART
cord-002994-1zjrunzc	364	176	assess	assess	VERB
cord-002994-1zjrunzc	364	177	codon	codon	NOUN
cord-002994-1zjrunzc	364	178	usage	usage	NOUN
cord-002994-1zjrunzc	364	179	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	364	180	a	a	DET
cord-002994-1zjrunzc	364	181	novel	novel	ADJ
cord-002994-1zjrunzc	364	182	server	server	NOUN
cord-002994-1zjrunzc	364	183	to	to	PART
cord-002994-1zjrunzc	364	184	estimate	estimate	VERB
cord-002994-1zjrunzc	364	185	an	an	DET
cord-002994-1zjrunzc	364	186	expected	expect	VERB
cord-002994-1zjrunzc	364	187	value	value	NOUN
cord-002994-1zjrunzc	364	188	of	of	ADP
cord-002994-1zjrunzc	364	189	codon	codon	NOUN
cord-002994-1zjrunzc	364	190	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	364	191	index	index	NOUN
cord-002994-1zjrunzc	364	192	(	(	PUNCT
cord-002994-1zjrunzc	364	193	ecai	ecai	PROPN
cord-002994-1zjrunzc	364	194	)	)	PUNCT
cord-002994-1zjrunzc	364	195	human	human	ADJ
cord-002994-1zjrunzc	364	196	housekeeping	housekeeping	NOUN
cord-002994-1zjrunzc	364	197	genes	gene	NOUN
cord-002994-1zjrunzc	364	198	,	,	PUNCT
cord-002994-1zjrunzc	364	199	revisited	revisit	VERB
cord-002994-1zjrunzc	364	200	berzal	berzal	PROPN
cord-002994-1zjrunzc	364	201	-	-	PUNCT
cord-002994-1zjrunzc	364	202	herranz	herranz	PROPN
cord-002994-1zjrunzc	364	203	,	,	PUNCT
cord-002994-1zjrunzc	364	204	a.	a.	NOUN
cord-002994-1zjrunzc	364	205	functional	functional	ADJ
cord-002994-1zjrunzc	364	206	information	information	NOUN
cord-002994-1zjrunzc	364	207	stored	store	VERB
cord-002994-1zjrunzc	364	208	in	in	ADP
cord-002994-1zjrunzc	364	209	the	the	DET
cord-002994-1zjrunzc	364	210	conserved	conserved	ADJ
cord-002994-1zjrunzc	364	211	structural	structural	ADJ
cord-002994-1zjrunzc	364	212	rna	rna	PROPN
cord-002994-1zjrunzc	364	213	domains	domain	NOUN
cord-002994-1zjrunzc	364	214	of	of	ADP
cord-002994-1zjrunzc	364	215	the	the	DET
cord-002994-1zjrunzc	364	216	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	364	217	genome	genome	NOUN
cord-002994-1zjrunzc	364	218	the	the	DET
cord-002994-1zjrunzc	364	219	extent	extent	NOUN
cord-002994-1zjrunzc	364	220	of	of	ADP
cord-002994-1zjrunzc	364	221	homologous	homologous	ADJ
cord-002994-1zjrunzc	364	222	recombination	recombination	NOUN
cord-002994-1zjrunzc	364	223	in	in	ADP
cord-002994-1zjrunzc	364	224	members	member	NOUN
cord-002994-1zjrunzc	364	225	of	of	ADP
cord-002994-1zjrunzc	364	226	the	the	DET
cord-002994-1zjrunzc	364	227	genus	genus	NOUN
cord-002994-1zjrunzc	364	228	flavivirus	flavivirus	PROPN
cord-002994-1zjrunzc	364	229	family	family	NOUN
cord-002994-1zjrunzc	364	230	level	level	NOUN
cord-002994-1zjrunzc	364	231	phylogenies	phylogeny	NOUN
cord-002994-1zjrunzc	364	232	reveal	reveal	VERB
cord-002994-1zjrunzc	364	233	modes	mode	NOUN
cord-002994-1zjrunzc	364	234	of	of	ADP
cord-002994-1zjrunzc	364	235	macroevolution	macroevolution	NOUN
cord-002994-1zjrunzc	364	236	in	in	ADP
cord-002994-1zjrunzc	364	237	rna	rna	PROPN
cord-002994-1zjrunzc	364	238	viruses	viruse	VERB
cord-002994-1zjrunzc	364	239	clinical	clinical	ADJ
cord-002994-1zjrunzc	364	240	sequencing	sequence	VERB
cord-002994-1zjrunzc	364	241	uncovers	uncover	NOUN
cord-002994-1zjrunzc	364	242	origins	origin	NOUN
cord-002994-1zjrunzc	364	243	and	and	CCONJ
cord-002994-1zjrunzc	364	244	evolution	evolution	NOUN
cord-002994-1zjrunzc	364	245	of	of	ADP
cord-002994-1zjrunzc	364	246	lassa	lassa	ADJ
cord-002994-1zjrunzc	364	247	virus	virus	NOUN
cord-002994-1zjrunzc	364	248	conserved	conserve	VERB
cord-002994-1zjrunzc	364	249	rna	rna	PROPN
cord-002994-1zjrunzc	364	250	secondary	secondary	ADJ
cord-002994-1zjrunzc	364	251	structures	structure	NOUN
cord-002994-1zjrunzc	364	252	in	in	ADP
cord-002994-1zjrunzc	364	253	flaviviridae	flaviviridae	NOUN
cord-002994-1zjrunzc	364	254	genomes	genome	VERB
cord-002994-1zjrunzc	364	255	flaviviral	flaviviral	ADJ
cord-002994-1zjrunzc	364	256	rnas	rna	NOUN
cord-002994-1zjrunzc	364	257	:	:	PUNCT
cord-002994-1zjrunzc	364	258	weapons	weapon	NOUN
cord-002994-1zjrunzc	364	259	and	and	CCONJ
cord-002994-1zjrunzc	364	260	targets	target	NOUN
cord-002994-1zjrunzc	364	261	in	in	ADP
cord-002994-1zjrunzc	364	262	the	the	DET
cord-002994-1zjrunzc	364	263	war	war	NOUN
cord-002994-1zjrunzc	364	264	between	between	ADP
cord-002994-1zjrunzc	364	265	virus	virus	NOUN
cord-002994-1zjrunzc	364	266	and	and	CCONJ
cord-002994-1zjrunzc	364	267	host	host	NOUN
cord-002994-1zjrunzc	364	268	identification	identification	NOUN
cord-002994-1zjrunzc	364	269	and	and	CCONJ
cord-002994-1zjrunzc	364	270	characterization	characterization	NOUN
cord-002994-1zjrunzc	364	271	of	of	ADP
cord-002994-1zjrunzc	364	272	small	small	ADJ
cord-002994-1zjrunzc	364	273	sub	sub	ADJ
cord-002994-1zjrunzc	364	274	-	-	ADJ
cord-002994-1zjrunzc	364	275	genomic	genomic	ADJ
cord-002994-1zjrunzc	364	276	rnas	rna	NOUN
cord-002994-1zjrunzc	364	277	in	in	ADP
cord-002994-1zjrunzc	364	278	dengue	dengue	PROPN
cord-002994-1zjrunzc	364	279	1	1	NUM
cord-002994-1zjrunzc	364	280	-	-	SYM
cord-002994-1zjrunzc	364	281	4	4	NUM
cord-002994-1zjrunzc	364	282	virus	virus	NOUN
cord-002994-1zjrunzc	364	283	-	-	PUNCT
cord-002994-1zjrunzc	364	284	infected	infect	VERB
cord-002994-1zjrunzc	364	285	cell	cell	NOUN
cord-002994-1zjrunzc	364	286	cultures	culture	NOUN
cord-002994-1zjrunzc	364	287	and	and	CCONJ
cord-002994-1zjrunzc	364	288	tissues	tissue	NOUN
cord-002994-1zjrunzc	364	289	a	a	DET
cord-002994-1zjrunzc	364	290	highly	highly	ADV
cord-002994-1zjrunzc	364	291	structured	structured	ADJ
cord-002994-1zjrunzc	364	292	,	,	PUNCT
cord-002994-1zjrunzc	364	293	nuclease	nuclease	NOUN
cord-002994-1zjrunzc	364	294	-	-	PUNCT
cord-002994-1zjrunzc	364	295	resistant	resistant	ADJ
cord-002994-1zjrunzc	364	296	,	,	PUNCT
cord-002994-1zjrunzc	364	297	noncoding	noncode	VERB
cord-002994-1zjrunzc	364	298	rna	rna	NOUN
cord-002994-1zjrunzc	364	299	produced	produce	VERB
cord-002994-1zjrunzc	364	300	by	by	ADP
cord-002994-1zjrunzc	364	301	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	364	302	is	be	AUX
cord-002994-1zjrunzc	364	303	required	require	VERB
cord-002994-1zjrunzc	364	304	for	for	ADP
cord-002994-1zjrunzc	364	305	pathogenicity	pathogenicity	NOUN
cord-002994-1zjrunzc	364	306	noncoding	noncode	VERB
cord-002994-1zjrunzc	364	307	subgenomic	subgenomic	ADJ
cord-002994-1zjrunzc	364	308	flavivirus	flavivirus	PROPN
cord-002994-1zjrunzc	364	309	rna	rna	PROPN
cord-002994-1zjrunzc	364	310	:	:	PUNCT
cord-002994-1zjrunzc	364	311	multiple	multiple	ADJ
cord-002994-1zjrunzc	364	312	functions	function	NOUN
cord-002994-1zjrunzc	364	313	in	in	ADP
cord-002994-1zjrunzc	364	314	west	west	PROPN
cord-002994-1zjrunzc	364	315	nile	nile	PROPN
cord-002994-1zjrunzc	364	316	virus	virus	PROPN
cord-002994-1zjrunzc	364	317	pathogenesis	pathogenesis	NOUN
cord-002994-1zjrunzc	364	318	and	and	CCONJ
cord-002994-1zjrunzc	364	319	modulation	modulation	NOUN
cord-002994-1zjrunzc	364	320	of	of	ADP
cord-002994-1zjrunzc	364	321	host	host	NOUN
cord-002994-1zjrunzc	364	322	responses	response	VERB
cord-002994-1zjrunzc	364	323	functional	functional	ADJ
cord-002994-1zjrunzc	364	324	non	non	ADJ
cord-002994-1zjrunzc	364	325	-	-	ADJ
cord-002994-1zjrunzc	364	326	coding	coding	ADJ
cord-002994-1zjrunzc	364	327	rnas	rna	NOUN
cord-002994-1zjrunzc	364	328	derived	derive	VERB
cord-002994-1zjrunzc	364	329	from	from	ADP
cord-002994-1zjrunzc	364	330	the	the	DET
cord-002994-1zjrunzc	364	331	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	364	332	3	3	NUM
cord-002994-1zjrunzc	364	333	untranslated	untranslated	ADJ
cord-002994-1zjrunzc	364	334	region	region	NOUN
cord-002994-1zjrunzc	364	335	japanese	japanese	ADJ
cord-002994-1zjrunzc	364	336	encephalitis	encephalitis	PROPN
cord-002994-1zjrunzc	364	337	virus	virus	PROPN
cord-002994-1zjrunzc	364	338	non	non	ADJ
cord-002994-1zjrunzc	364	339	-	-	ADJ
cord-002994-1zjrunzc	364	340	coding	coding	ADJ
cord-002994-1zjrunzc	364	341	rna	rna	NOUN
cord-002994-1zjrunzc	364	342	inhibits	inhibit	VERB
cord-002994-1zjrunzc	364	343	activation	activation	NOUN
cord-002994-1zjrunzc	364	344	of	of	ADP
cord-002994-1zjrunzc	364	345	interferon	interferon	NOUN
cord-002994-1zjrunzc	364	346	by	by	ADP
cord-002994-1zjrunzc	364	347	blocking	block	VERB
cord-002994-1zjrunzc	364	348	nuclear	nuclear	ADJ
cord-002994-1zjrunzc	364	349	translocation	translocation	NOUN
cord-002994-1zjrunzc	364	350	of	of	ADP
cord-002994-1zjrunzc	364	351	interferon	interferon	ADJ
cord-002994-1zjrunzc	364	352	regulatory	regulatory	ADJ
cord-002994-1zjrunzc	364	353	factor	factor	NOUN
cord-002994-1zjrunzc	364	354	3	3	NUM
cord-002994-1zjrunzc	364	355	poly	poly	ADJ
cord-002994-1zjrunzc	364	356	(	(	PUNCT
cord-002994-1zjrunzc	364	357	a)-binding	a)-binde	VERB
cord-002994-1zjrunzc	364	358	protein	protein	NOUN
cord-002994-1zjrunzc	364	359	binds	bind	VERB
cord-002994-1zjrunzc	364	360	to	to	ADP
cord-002994-1zjrunzc	364	361	the	the	DET
cord-002994-1zjrunzc	364	362	non	non	ADJ
cord-002994-1zjrunzc	364	363	-	-	ADJ
cord-002994-1zjrunzc	364	364	polyadenylated	polyadenylate	VERB
cord-002994-1zjrunzc	364	365	3	3	NUM
cord-002994-1zjrunzc	364	366	untranslated	untranslated	ADJ
cord-002994-1zjrunzc	364	367	region	region	NOUN
cord-002994-1zjrunzc	364	368	of	of	ADP
cord-002994-1zjrunzc	364	369	dengue	dengue	PROPN
cord-002994-1zjrunzc	364	370	virus	virus	PROPN
cord-002994-1zjrunzc	364	371	and	and	CCONJ
cord-002994-1zjrunzc	364	372	modulates	modulate	NOUN
cord-002994-1zjrunzc	364	373	translation	translation	NOUN
cord-002994-1zjrunzc	364	374	efficiency	efficiency	PROPN
cord-002994-1zjrunzc	364	375	rna	rna	PROPN
cord-002994-1zjrunzc	364	376	structure	structure	NOUN
cord-002994-1zjrunzc	364	377	duplications	duplication	NOUN
cord-002994-1zjrunzc	364	378	and	and	CCONJ
cord-002994-1zjrunzc	364	379	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	364	380	host	host	NOUN
cord-002994-1zjrunzc	364	381	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	364	382	west	west	PROPN
cord-002994-1zjrunzc	364	383	nile	nile	PROPN
cord-002994-1zjrunzc	364	384	virus	virus	PROPN
cord-002994-1zjrunzc	364	385	encodes	encode	VERB
cord-002994-1zjrunzc	364	386	a	a	DET
cord-002994-1zjrunzc	364	387	microrna	microrna	PROPN
cord-002994-1zjrunzc	364	388	-	-	PUNCT
cord-002994-1zjrunzc	364	389	like	like	ADJ
cord-002994-1zjrunzc	364	390	small	small	ADJ
cord-002994-1zjrunzc	364	391	rna	rna	NOUN
cord-002994-1zjrunzc	364	392	in	in	ADP
cord-002994-1zjrunzc	364	393	the	the	DET
cord-002994-1zjrunzc	364	394	3	3	NUM
cord-002994-1zjrunzc	364	395	untranslated	untranslated	ADJ
cord-002994-1zjrunzc	364	396	region	region	NOUN
cord-002994-1zjrunzc	364	397	which	which	PRON
cord-002994-1zjrunzc	364	398	up	up	ADP
cord-002994-1zjrunzc	364	399	-	-	PUNCT
cord-002994-1zjrunzc	364	400	regulates	regulate	VERB
cord-002994-1zjrunzc	364	401	gata4	gata4	NOUN
cord-002994-1zjrunzc	364	402	mrna	mrna	NOUN
cord-002994-1zjrunzc	364	403	and	and	CCONJ
cord-002994-1zjrunzc	364	404	facilitates	facilitate	VERB
cord-002994-1zjrunzc	364	405	virus	virus	NOUN
cord-002994-1zjrunzc	364	406	replication	replication	NOUN
cord-002994-1zjrunzc	364	407	in	in	ADP
cord-002994-1zjrunzc	364	408	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	364	409	cells	cell	NOUN
cord-002994-1zjrunzc	364	410	isolation	isolation	NOUN
cord-002994-1zjrunzc	364	411	and	and	CCONJ
cord-002994-1zjrunzc	364	412	genome	genome	NOUN
cord-002994-1zjrunzc	364	413	characterization	characterization	NOUN
cord-002994-1zjrunzc	364	414	of	of	ADP
cord-002994-1zjrunzc	364	415	a	a	DET
cord-002994-1zjrunzc	364	416	novel	novel	ADJ
cord-002994-1zjrunzc	364	417	duck	duck	NOUN
cord-002994-1zjrunzc	364	418	tembusu	tembusu	NOUN
cord-002994-1zjrunzc	364	419	virus	virus	NOUN
cord-002994-1zjrunzc	364	420	with	with	ADP
cord-002994-1zjrunzc	364	421	a	a	DET
cord-002994-1zjrunzc	364	422	74	74	NUM
cord-002994-1zjrunzc	364	423	nucleotide	nucleotide	NOUN
cord-002994-1zjrunzc	364	424	insertion	insertion	NOUN
cord-002994-1zjrunzc	364	425	in	in	ADP
cord-002994-1zjrunzc	364	426	the	the	DET
cord-002994-1zjrunzc	364	427	3	3	NUM
cord-002994-1zjrunzc	364	428	non	non	ADJ
cord-002994-1zjrunzc	364	429	-	-	ADJ
cord-002994-1zjrunzc	364	430	translated	translate	VERB
cord-002994-1zjrunzc	364	431	region	region	NOUN
cord-002994-1zjrunzc	364	432	post	post	ADJ
cord-002994-1zjrunzc	364	433	-	-	ADJ
cord-002994-1zjrunzc	364	434	translational	translational	ADJ
cord-002994-1zjrunzc	364	435	regulation	regulation	NOUN
cord-002994-1zjrunzc	364	436	and	and	CCONJ
cord-002994-1zjrunzc	364	437	modifications	modification	NOUN
cord-002994-1zjrunzc	364	438	of	of	ADP
cord-002994-1zjrunzc	364	439	flavivirus	flavivirus	ADJ
cord-002994-1zjrunzc	364	440	structural	structural	ADJ
cord-002994-1zjrunzc	364	441	proteins	protein	NOUN
cord-002994-1zjrunzc	364	442	structural	structural	ADJ
cord-002994-1zjrunzc	364	443	and	and	CCONJ
cord-002994-1zjrunzc	364	444	functional	functional	ADJ
cord-002994-1zjrunzc	364	445	studies	study	NOUN
cord-002994-1zjrunzc	364	446	of	of	ADP
cord-002994-1zjrunzc	364	447	the	the	DET
cord-002994-1zjrunzc	364	448	promoter	promoter	NOUN
cord-002994-1zjrunzc	364	449	element	element	NOUN
cord-002994-1zjrunzc	364	450	for	for	ADP
cord-002994-1zjrunzc	364	451	dengue	dengue	PROPN
cord-002994-1zjrunzc	364	452	virus	virus	PROPN
cord-002994-1zjrunzc	364	453	rna	rna	PROPN
cord-002994-1zjrunzc	364	454	replication	replication	NOUN
cord-002994-1zjrunzc	364	455	a	a	DET
cord-002994-1zjrunzc	364	456	trade	trade	NOUN
cord-002994-1zjrunzc	364	457	-	-	PUNCT
cord-002994-1zjrunzc	364	458	off	off	NOUN
cord-002994-1zjrunzc	364	459	in	in	ADP
cord-002994-1zjrunzc	364	460	replication	replication	NOUN
cord-002994-1zjrunzc	364	461	in	in	ADP
cord-002994-1zjrunzc	364	462	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	364	463	versus	versus	ADP
cord-002994-1zjrunzc	364	464	mammalian	mammalian	PROPN
cord-002994-1zjrunzc	364	465	systems	system	NOUN
cord-002994-1zjrunzc	364	466	conferred	confer	VERB
cord-002994-1zjrunzc	364	467	by	by	ADP
cord-002994-1zjrunzc	364	468	a	a	DET
cord-002994-1zjrunzc	364	469	point	point	NOUN
cord-002994-1zjrunzc	364	470	mutation	mutation	NOUN
cord-002994-1zjrunzc	364	471	in	in	ADP
cord-002994-1zjrunzc	364	472	the	the	DET
cord-002994-1zjrunzc	364	473	ns4b	ns4b	PRON
cord-002994-1zjrunzc	364	474	protein	protein	NOUN
cord-002994-1zjrunzc	364	475	of	of	ADP
cord-002994-1zjrunzc	364	476	dengue	dengue	PROPN
cord-002994-1zjrunzc	364	477	virus	virus	PROPN
cord-002994-1zjrunzc	364	478	type	type	NOUN
cord-002994-1zjrunzc	364	479	4	4	NUM
cord-002994-1zjrunzc	364	480	flavivirus	flavivirus	PROPN
cord-002994-1zjrunzc	364	481	ns1	ns1	PROPN
cord-002994-1zjrunzc	364	482	:	:	PUNCT
cord-002994-1zjrunzc	364	483	a	a	DET
cord-002994-1zjrunzc	364	484	multifaceted	multifaceted	ADJ
cord-002994-1zjrunzc	364	485	enigmatic	enigmatic	ADJ
cord-002994-1zjrunzc	364	486	viral	viral	ADJ
cord-002994-1zjrunzc	364	487	protein	protein	NOUN
cord-002994-1zjrunzc	364	488	a	a	DET
cord-002994-1zjrunzc	364	489	proline	proline	NOUN
cord-002994-1zjrunzc	364	490	-	-	PUNCT
cord-002994-1zjrunzc	364	491	rich	rich	ADJ
cord-002994-1zjrunzc	364	492	n	n	ADJ
cord-002994-1zjrunzc	364	493	-	-	ADJ
cord-002994-1zjrunzc	364	494	terminal	terminal	ADJ
cord-002994-1zjrunzc	364	495	region	region	NOUN
cord-002994-1zjrunzc	364	496	of	of	ADP
cord-002994-1zjrunzc	364	497	the	the	DET
cord-002994-1zjrunzc	364	498	dengue	dengue	PROPN
cord-002994-1zjrunzc	364	499	virus	virus	NOUN
cord-002994-1zjrunzc	364	500	ns3	ns3	ADV
cord-002994-1zjrunzc	364	501	is	be	AUX
cord-002994-1zjrunzc	364	502	crucial	crucial	ADJ
cord-002994-1zjrunzc	364	503	for	for	ADP
cord-002994-1zjrunzc	364	504	infectious	infectious	ADJ
cord-002994-1zjrunzc	364	505	particle	particle	NOUN
cord-002994-1zjrunzc	364	506	production	production	NOUN
cord-002994-1zjrunzc	364	507	evaluation	evaluation	NOUN
cord-002994-1zjrunzc	364	508	of	of	ADP
cord-002994-1zjrunzc	364	509	the	the	DET
cord-002994-1zjrunzc	364	510	efficiency	efficiency	NOUN
cord-002994-1zjrunzc	364	511	of	of	ADP
cord-002994-1zjrunzc	364	512	bird	bird	NOUN
cord-002994-1zjrunzc	364	513	-	-	PUNCT
cord-002994-1zjrunzc	364	514	baited	bait	VERB
cord-002994-1zjrunzc	364	515	traps	trap	NOUN
cord-002994-1zjrunzc	364	516	for	for	ADP
cord-002994-1zjrunzc	364	517	sampling	sample	VERB
cord-002994-1zjrunzc	364	518	potential	potential	ADJ
cord-002994-1zjrunzc	364	519	west	west	PROPN
cord-002994-1zjrunzc	364	520	nile	nile	PROPN
cord-002994-1zjrunzc	364	521	fever	fever	PROPN
cord-002994-1zjrunzc	364	522	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	364	523	vectors	vector	NOUN
cord-002994-1zjrunzc	364	524	(	(	PUNCT
cord-002994-1zjrunzc	364	525	diptera	diptera	PROPN
cord-002994-1zjrunzc	364	526	:	:	PUNCT
cord-002994-1zjrunzc	364	527	culicidae	culicidae	PROPN
cord-002994-1zjrunzc	364	528	)	)	PUNCT
cord-002994-1zjrunzc	364	529	in	in	ADP
cord-002994-1zjrunzc	364	530	senegal	senegal	ADJ
cord-002994-1zjrunzc	364	531	vector	vector	NOUN
cord-002994-1zjrunzc	364	532	competence	competence	NOUN
cord-002994-1zjrunzc	364	533	of	of	ADP
cord-002994-1zjrunzc	364	534	culex	culex	PROPN
cord-002994-1zjrunzc	364	535	neavei	neavei	PROPN
cord-002994-1zjrunzc	364	536	(	(	PUNCT
cord-002994-1zjrunzc	364	537	diptera	diptera	PROPN
cord-002994-1zjrunzc	364	538	:	:	PUNCT
cord-002994-1zjrunzc	364	539	culicidae	culicidae	PROPN
cord-002994-1zjrunzc	364	540	)	)	PUNCT
cord-002994-1zjrunzc	364	541	for	for	ADP
cord-002994-1zjrunzc	364	542	usutu	usutu	PROPN
cord-002994-1zjrunzc	364	543	virus	virus	PROPN
cord-002994-1zjrunzc	364	544	vector	vector	NOUN
cord-002994-1zjrunzc	364	545	competence	competence	NOUN
cord-002994-1zjrunzc	364	546	of	of	ADP
cord-002994-1zjrunzc	364	547	culex	culex	PROPN
cord-002994-1zjrunzc	364	548	neavei	neavei	PROPN
cord-002994-1zjrunzc	364	549	and	and	CCONJ
cord-002994-1zjrunzc	364	550	culex	culex	NOUN
cord-002994-1zjrunzc	364	551	quinquefasciatus	quinquefasciatu	NOUN
cord-002994-1zjrunzc	364	552	(	(	PUNCT
cord-002994-1zjrunzc	364	553	diptera	diptera	PROPN
cord-002994-1zjrunzc	364	554	:	:	PUNCT
cord-002994-1zjrunzc	364	555	culicidae	culicidae	PROPN
cord-002994-1zjrunzc	364	556	)	)	PUNCT
cord-002994-1zjrunzc	364	557	from	from	ADP
cord-002994-1zjrunzc	364	558	senegal	senegal	PROPN
cord-002994-1zjrunzc	364	559	for	for	ADP
cord-002994-1zjrunzc	364	560	lineages	lineage	NOUN
cord-002994-1zjrunzc	364	561	1	1	NUM
cord-002994-1zjrunzc	364	562	,	,	PUNCT
cord-002994-1zjrunzc	364	563	2	2	NUM
cord-002994-1zjrunzc	364	564	,	,	PUNCT
cord-002994-1zjrunzc	364	565	koutango	koutango	PROPN
cord-002994-1zjrunzc	364	566	and	and	CCONJ
cord-002994-1zjrunzc	364	567	a	a	DET
cord-002994-1zjrunzc	364	568	putative	putative	ADJ
cord-002994-1zjrunzc	364	569	new	new	ADJ
cord-002994-1zjrunzc	364	570	lineage	lineage	NOUN
cord-002994-1zjrunzc	364	571	of	of	ADP
cord-002994-1zjrunzc	364	572	west	west	PROPN
cord-002994-1zjrunzc	364	573	nile	nile	PROPN
cord-002994-1zjrunzc	364	574	virus	virus	PROPN
cord-002994-1zjrunzc	364	575	flaviviral	flaviviral	ADJ
cord-002994-1zjrunzc	364	576	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	364	577	,	,	PUNCT
cord-002994-1zjrunzc	364	578	chameleon	chameleon	NOUN
cord-002994-1zjrunzc	364	579	and	and	CCONJ
cord-002994-1zjrunzc	364	580	jack	jack	NOUN
cord-002994-1zjrunzc	364	581	-	-	PUNCT
cord-002994-1zjrunzc	364	582	in	in	ADP
cord-002994-1zjrunzc	364	583	-	-	PUNCT
cord-002994-1zjrunzc	364	584	the	the	DET
cord-002994-1zjrunzc	364	585	-	-	PUNCT
cord-002994-1zjrunzc	364	586	box	box	NOUN
cord-002994-1zjrunzc	364	587	roles	role	NOUN
cord-002994-1zjrunzc	364	588	in	in	ADP
cord-002994-1zjrunzc	364	589	viral	viral	ADJ
cord-002994-1zjrunzc	364	590	replication	replication	NOUN
cord-002994-1zjrunzc	364	591	and	and	CCONJ
cord-002994-1zjrunzc	364	592	pathogenesis	pathogenesis	NOUN
cord-002994-1zjrunzc	364	593	,	,	PUNCT
cord-002994-1zjrunzc	364	594	and	and	CCONJ
cord-002994-1zjrunzc	364	595	a	a	DET
cord-002994-1zjrunzc	364	596	molecular	molecular	ADJ
cord-002994-1zjrunzc	364	597	target	target	NOUN
cord-002994-1zjrunzc	364	598	for	for	ADP
cord-002994-1zjrunzc	364	599	antiviral	antiviral	ADJ
cord-002994-1zjrunzc	364	600	intervention	intervention	NOUN
cord-002994-1zjrunzc	364	601	a	a	DET
cord-002994-1zjrunzc	364	602	combined	combine	VERB
cord-002994-1zjrunzc	364	603	genetic	genetic	ADJ
cord-002994-1zjrunzc	364	604	-	-	PUNCT
cord-002994-1zjrunzc	364	605	proteomic	proteomic	ADJ
cord-002994-1zjrunzc	364	606	approach	approach	NOUN
cord-002994-1zjrunzc	364	607	identifies	identify	VERB
cord-002994-1zjrunzc	364	608	residues	residue	NOUN
cord-002994-1zjrunzc	364	609	within	within	ADP
cord-002994-1zjrunzc	364	610	dengue	dengue	PROPN
cord-002994-1zjrunzc	364	611	virus	virus	NOUN
cord-002994-1zjrunzc	364	612	ns4b	ns4b	PRON
cord-002994-1zjrunzc	364	613	critical	critical	ADJ
cord-002994-1zjrunzc	364	614	for	for	ADP
cord-002994-1zjrunzc	364	615	interaction	interaction	NOUN
cord-002994-1zjrunzc	364	616	with	with	ADP
cord-002994-1zjrunzc	364	617	ns3	ns3	ADJ
cord-002994-1zjrunzc	364	618	and	and	CCONJ
cord-002994-1zjrunzc	364	619	viral	viral	ADJ
cord-002994-1zjrunzc	364	620	replication	replication	NOUN
cord-002994-1zjrunzc	364	621	evidence	evidence	NOUN
cord-002994-1zjrunzc	364	622	for	for	ADP
cord-002994-1zjrunzc	364	623	a	a	DET
cord-002994-1zjrunzc	364	624	genetic	genetic	ADJ
cord-002994-1zjrunzc	364	625	and	and	CCONJ
cord-002994-1zjrunzc	364	626	physical	physical	ADJ
cord-002994-1zjrunzc	364	627	interaction	interaction	NOUN
cord-002994-1zjrunzc	364	628	between	between	ADP
cord-002994-1zjrunzc	364	629	nonstructural	nonstructural	ADJ
cord-002994-1zjrunzc	364	630	proteins	protein	NOUN
cord-002994-1zjrunzc	364	631	ns1	ns1	NOUN
cord-002994-1zjrunzc	364	632	and	and	CCONJ
cord-002994-1zjrunzc	364	633	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	364	634	that	that	PRON
cord-002994-1zjrunzc	364	635	modulates	modulate	VERB
cord-002994-1zjrunzc	364	636	replication	replication	NOUN
cord-002994-1zjrunzc	364	637	of	of	ADP
cord-002994-1zjrunzc	364	638	west	west	PROPN
cord-002994-1zjrunzc	364	639	nile	nile	PROPN
cord-002994-1zjrunzc	364	640	virus	virus	PROPN
cord-002994-1zjrunzc	364	641	mutation	mutation	NOUN
cord-002994-1zjrunzc	364	642	of	of	ADP
cord-002994-1zjrunzc	364	643	putative	putative	ADJ
cord-002994-1zjrunzc	364	644	n	n	NOUN
cord-002994-1zjrunzc	364	645	-	-	PUNCT
cord-002994-1zjrunzc	364	646	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	364	647	sites	site	NOUN
cord-002994-1zjrunzc	364	648	on	on	ADP
cord-002994-1zjrunzc	364	649	dengue	dengue	PROPN
cord-002994-1zjrunzc	364	650	virus	virus	NOUN
cord-002994-1zjrunzc	364	651	ns4b	ns4b	PROPN
cord-002994-1zjrunzc	364	652	decreases	decrease	VERB
cord-002994-1zjrunzc	364	653	rna	rna	NOUN
cord-002994-1zjrunzc	364	654	replication	replication	NOUN
cord-002994-1zjrunzc	364	655	biological	biological	ADJ
cord-002994-1zjrunzc	364	656	and	and	CCONJ
cord-002994-1zjrunzc	364	657	phylogenetic	phylogenetic	ADJ
cord-002994-1zjrunzc	364	658	characteristics	characteristic	NOUN
cord-002994-1zjrunzc	364	659	of	of	ADP
cord-002994-1zjrunzc	364	660	west	west	ADJ
cord-002994-1zjrunzc	364	661	african	african	ADJ
cord-002994-1zjrunzc	364	662	lineages	lineage	NOUN
cord-002994-1zjrunzc	364	663	of	of	ADP
cord-002994-1zjrunzc	364	664	west	west	PROPN
cord-002994-1zjrunzc	364	665	nile	nile	PROPN
cord-002994-1zjrunzc	364	666	virus	virus	PROPN
cord-002994-1zjrunzc	364	667	n	n	ADV
cord-002994-1zjrunzc	364	668	-	-	PUNCT
cord-002994-1zjrunzc	364	669	linked	link	VERB
cord-002994-1zjrunzc	364	670	glycans	glycan	NOUN
cord-002994-1zjrunzc	364	671	on	on	ADP
cord-002994-1zjrunzc	364	672	dengue	dengue	NOUN
cord-002994-1zjrunzc	364	673	viruses	virus	NOUN
cord-002994-1zjrunzc	364	674	grown	grow	VERB
cord-002994-1zjrunzc	364	675	in	in	ADP
cord-002994-1zjrunzc	364	676	mammalian	mammalian	ADJ
cord-002994-1zjrunzc	364	677	and	and	CCONJ
cord-002994-1zjrunzc	364	678	insect	insect	NOUN
cord-002994-1zjrunzc	364	679	cells	cell	NOUN
cord-002994-1zjrunzc	364	680	crucial	crucial	ADJ
cord-002994-1zjrunzc	364	681	role	role	NOUN
cord-002994-1zjrunzc	364	682	of	of	ADP
cord-002994-1zjrunzc	364	683	the	the	DET
cord-002994-1zjrunzc	364	684	n	n	NOUN
cord-002994-1zjrunzc	364	685	-	-	NOUN
cord-002994-1zjrunzc	364	686	glycans	glycan	NOUN
cord-002994-1zjrunzc	364	687	on	on	ADP
cord-002994-1zjrunzc	364	688	the	the	DET
cord-002994-1zjrunzc	364	689	viral	viral	ADJ
cord-002994-1zjrunzc	364	690	e	e	NOUN
cord-002994-1zjrunzc	364	691	-	-	NOUN
cord-002994-1zjrunzc	364	692	envelope	envelope	NOUN
cord-002994-1zjrunzc	364	693	glycoprotein	glycoprotein	NOUN
cord-002994-1zjrunzc	364	694	in	in	ADP
cord-002994-1zjrunzc	364	695	dc	dc	PROPN
cord-002994-1zjrunzc	364	696	-	-	PUNCT
cord-002994-1zjrunzc	364	697	sign	sign	NOUN
cord-002994-1zjrunzc	364	698	-	-	PUNCT
cord-002994-1zjrunzc	364	699	mediated	mediate	VERB
cord-002994-1zjrunzc	364	700	dengue	dengue	NOUN
cord-002994-1zjrunzc	364	701	virus	virus	PROPN
cord-002994-1zjrunzc	364	702	infection	infection	NOUN
cord-002994-1zjrunzc	364	703	n	n	NOUN
cord-002994-1zjrunzc	364	704	-	-	PUNCT
cord-002994-1zjrunzc	364	705	linked	link	VERB
cord-002994-1zjrunzc	364	706	glycosylation	glycosylation	NOUN
cord-002994-1zjrunzc	364	707	of	of	ADP
cord-002994-1zjrunzc	364	708	west	west	PROPN
cord-002994-1zjrunzc	364	709	nile	nile	PROPN
cord-002994-1zjrunzc	364	710	virus	virus	PROPN
cord-002994-1zjrunzc	364	711	envelope	envelope	NOUN
cord-002994-1zjrunzc	364	712	proteins	protein	NOUN
cord-002994-1zjrunzc	364	713	influences	influence	NOUN
cord-002994-1zjrunzc	364	714	particle	particle	NOUN
cord-002994-1zjrunzc	364	715	assembly	assembly	NOUN
cord-002994-1zjrunzc	364	716	and	and	CCONJ
cord-002994-1zjrunzc	364	717	infectivity	infectivity	NOUN
cord-002994-1zjrunzc	364	718	molecular	molecular	ADJ
cord-002994-1zjrunzc	364	719	evolution	evolution	NOUN
cord-002994-1zjrunzc	364	720	of	of	ADP
cord-002994-1zjrunzc	364	721	zika	zika	NOUN
cord-002994-1zjrunzc	364	722	virus	virus	NOUN
cord-002994-1zjrunzc	364	723	during	during	ADP
cord-002994-1zjrunzc	364	724	its	its	PRON
cord-002994-1zjrunzc	364	725	emergence	emergence	NOUN
cord-002994-1zjrunzc	364	726	in	in	ADP
cord-002994-1zjrunzc	364	727	the	the	DET
cord-002994-1zjrunzc	364	728	20(th	20(th	NUM
cord-002994-1zjrunzc	364	729	)	)	PUNCT
cord-002994-1zjrunzc	364	730	century	century	NOUN
cord-002994-1zjrunzc	364	731	the	the	DET
cord-002994-1zjrunzc	364	732	hiv	hiv	PROPN
cord-002994-1zjrunzc	364	733	glycan	glycan	NOUN
cord-002994-1zjrunzc	364	734	shield	shield	NOUN
cord-002994-1zjrunzc	364	735	as	as	ADP
cord-002994-1zjrunzc	364	736	a	a	DET
cord-002994-1zjrunzc	364	737	target	target	NOUN
cord-002994-1zjrunzc	364	738	for	for	ADP
cord-002994-1zjrunzc	364	739	broadly	broadly	ADV
cord-002994-1zjrunzc	364	740	neutralizing	neutralizing	ADJ
cord-002994-1zjrunzc	364	741	antibodies	antibody	NOUN
cord-002994-1zjrunzc	364	742	glycan	glycan	NOUN
cord-002994-1zjrunzc	364	743	shield	shield	PROPN
cord-002994-1zjrunzc	364	744	and	and	CCONJ
cord-002994-1zjrunzc	364	745	epitope	epitope	NOUN
cord-002994-1zjrunzc	364	746	masking	masking	NOUN
cord-002994-1zjrunzc	364	747	of	of	ADP
cord-002994-1zjrunzc	364	748	a	a	DET
cord-002994-1zjrunzc	364	749	coronavirus	coronavirus	NOUN
cord-002994-1zjrunzc	364	750	spike	spike	NOUN
cord-002994-1zjrunzc	364	751	protein	protein	NOUN
cord-002994-1zjrunzc	364	752	observed	observe	VERB
cord-002994-1zjrunzc	364	753	by	by	ADP
cord-002994-1zjrunzc	364	754	cryo	cryo	NOUN
cord-002994-1zjrunzc	364	755	-	-	PUNCT
cord-002994-1zjrunzc	364	756	electron	electron	NOUN
cord-002994-1zjrunzc	364	757	microscopy	microscopy	ADJ
cord-002994-1zjrunzc	364	758	characterization	characterization	NOUN
cord-002994-1zjrunzc	364	759	of	of	ADP
cord-002994-1zjrunzc	364	760	n	n	ADJ
cord-002994-1zjrunzc	364	761	-	-	PUNCT
cord-002994-1zjrunzc	364	762	glycan	glycan	NOUN
cord-002994-1zjrunzc	364	763	structures	structure	NOUN
cord-002994-1zjrunzc	364	764	on	on	ADP
cord-002994-1zjrunzc	364	765	the	the	DET
cord-002994-1zjrunzc	364	766	surface	surface	NOUN
cord-002994-1zjrunzc	364	767	of	of	ADP
cord-002994-1zjrunzc	364	768	mature	mature	ADJ
cord-002994-1zjrunzc	364	769	dengue	dengue	NOUN
cord-002994-1zjrunzc	364	770	2	2	NUM
cord-002994-1zjrunzc	364	771	virus	virus	NOUN
cord-002994-1zjrunzc	364	772	derived	derive	VERB
cord-002994-1zjrunzc	364	773	from	from	ADP
cord-002994-1zjrunzc	364	774	insect	insect	NOUN
cord-002994-1zjrunzc	364	775	cells	cell	NOUN
cord-002994-1zjrunzc	364	776	structure	structure	NOUN
cord-002994-1zjrunzc	364	777	-	-	PUNCT
cord-002994-1zjrunzc	364	778	based	base	VERB
cord-002994-1zjrunzc	364	779	mutational	mutational	ADJ
cord-002994-1zjrunzc	364	780	analysis	analysis	NOUN
cord-002994-1zjrunzc	364	781	of	of	ADP
cord-002994-1zjrunzc	364	782	several	several	ADJ
cord-002994-1zjrunzc	364	783	sites	site	NOUN
cord-002994-1zjrunzc	364	784	in	in	ADP
cord-002994-1zjrunzc	364	785	the	the	DET
cord-002994-1zjrunzc	364	786	e	e	NOUN
cord-002994-1zjrunzc	364	787	protein	protein	NOUN
cord-002994-1zjrunzc	364	788	:	:	PUNCT
cord-002994-1zjrunzc	364	789	implications	implication	NOUN
cord-002994-1zjrunzc	364	790	for	for	ADP
cord-002994-1zjrunzc	364	791	understanding	understand	VERB
cord-002994-1zjrunzc	364	792	the	the	DET
cord-002994-1zjrunzc	364	793	entry	entry	NOUN
cord-002994-1zjrunzc	364	794	mechanism	mechanism	NOUN
cord-002994-1zjrunzc	364	795	of	of	ADP
cord-002994-1zjrunzc	364	796	japanese	japanese	ADJ
cord-002994-1zjrunzc	364	797	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	364	798	virus	virus	NOUN
cord-002994-1zjrunzc	364	799	in	in	ADP
cord-002994-1zjrunzc	364	800	vitro	vitro	X
cord-002994-1zjrunzc	364	801	and	and	CCONJ
cord-002994-1zjrunzc	364	802	in	in	ADP
cord-002994-1zjrunzc	364	803	vivo	vivo	NOUN
cord-002994-1zjrunzc	364	804	evaluation	evaluation	NOUN
cord-002994-1zjrunzc	364	805	of	of	ADP
cord-002994-1zjrunzc	364	806	mutations	mutation	NOUN
cord-002994-1zjrunzc	364	807	in	in	ADP
cord-002994-1zjrunzc	364	808	the	the	DET
cord-002994-1zjrunzc	364	809	ns	ns	NOUN
cord-002994-1zjrunzc	364	810	region	region	NOUN
cord-002994-1zjrunzc	364	811	of	of	ADP
cord-002994-1zjrunzc	364	812	lineage	lineage	PROPN
cord-002994-1zjrunzc	364	813	2	2	NUM
cord-002994-1zjrunzc	364	814	west	west	PROPN
cord-002994-1zjrunzc	364	815	nile	nile	PROPN
cord-002994-1zjrunzc	364	816	virus	virus	PROPN
cord-002994-1zjrunzc	364	817	associated	associate	VERB
cord-002994-1zjrunzc	364	818	with	with	ADP
cord-002994-1zjrunzc	364	819	neuroinvasiveness	neuroinvasiveness	PROPN
cord-002994-1zjrunzc	364	820	in	in	ADP
cord-002994-1zjrunzc	364	821	a	a	DET
cord-002994-1zjrunzc	364	822	mammalian	mammalian	ADJ
cord-002994-1zjrunzc	364	823	model	model	NOUN
cord-002994-1zjrunzc	364	824	why	why	SCONJ
cord-002994-1zjrunzc	364	825	do	do	AUX
cord-002994-1zjrunzc	364	826	rna	rna	NOUN
cord-002994-1zjrunzc	364	827	viruses	virus	NOUN
cord-002994-1zjrunzc	364	828	recombine	recombine	VERB
cord-002994-1zjrunzc	364	829	?	?	PUNCT
cord-002994-1zjrunzc	365	1	analysis	analysis	NOUN
cord-002994-1zjrunzc	365	2	of	of	ADP
cord-002994-1zjrunzc	365	3	genotype	genotype	NOUN
cord-002994-1zjrunzc	365	4	diversity	diversity	NOUN
cord-002994-1zjrunzc	365	5	and	and	CCONJ
cord-002994-1zjrunzc	365	6	evolution	evolution	NOUN
cord-002994-1zjrunzc	365	7	of	of	ADP
cord-002994-1zjrunzc	365	8	dengue	dengue	PROPN
cord-002994-1zjrunzc	365	9	virus	virus	PROPN
cord-002994-1zjrunzc	365	10	serotype	serotype	VERB
cord-002994-1zjrunzc	365	11	2	2	NUM
cord-002994-1zjrunzc	365	12	using	use	VERB
cord-002994-1zjrunzc	365	13	complete	complete	ADJ
cord-002994-1zjrunzc	365	14	genomes	genome	NOUN
cord-002994-1zjrunzc	365	15	effects	effect	NOUN
cord-002994-1zjrunzc	365	16	of	of	ADP
cord-002994-1zjrunzc	365	17	recombination	recombination	NOUN
cord-002994-1zjrunzc	365	18	on	on	ADP
cord-002994-1zjrunzc	365	19	densovirus	densovirus	PROPN
cord-002994-1zjrunzc	365	20	phylogeny	phylogeny	ADP
cord-002994-1zjrunzc	365	21	a	a	DET
cord-002994-1zjrunzc	365	22	large	large	ADJ
cord-002994-1zjrunzc	365	23	variation	variation	NOUN
cord-002994-1zjrunzc	365	24	in	in	ADP
cord-002994-1zjrunzc	365	25	the	the	DET
cord-002994-1zjrunzc	365	26	rates	rate	NOUN
cord-002994-1zjrunzc	365	27	of	of	ADP
cord-002994-1zjrunzc	365	28	synonymous	synonymous	ADJ
cord-002994-1zjrunzc	365	29	substitution	substitution	NOUN
cord-002994-1zjrunzc	365	30	for	for	ADP
cord-002994-1zjrunzc	365	31	rna	rna	NOUN
cord-002994-1zjrunzc	365	32	viruses	virus	NOUN
cord-002994-1zjrunzc	365	33	and	and	CCONJ
cord-002994-1zjrunzc	365	34	its	its	PRON
cord-002994-1zjrunzc	365	35	relationship	relationship	NOUN
cord-002994-1zjrunzc	365	36	to	to	ADP
cord-002994-1zjrunzc	365	37	a	a	DET
cord-002994-1zjrunzc	365	38	diversity	diversity	NOUN
cord-002994-1zjrunzc	365	39	of	of	ADP
cord-002994-1zjrunzc	365	40	viral	viral	ADJ
cord-002994-1zjrunzc	365	41	infection	infection	NOUN
cord-002994-1zjrunzc	365	42	and	and	CCONJ
cord-002994-1zjrunzc	365	43	transmission	transmission	NOUN
cord-002994-1zjrunzc	365	44	modes	mode	NOUN
cord-002994-1zjrunzc	365	45	recombination	recombination	NOUN
cord-002994-1zjrunzc	365	46	and	and	CCONJ
cord-002994-1zjrunzc	365	47	positive	positive	ADJ
cord-002994-1zjrunzc	365	48	selection	selection	NOUN
cord-002994-1zjrunzc	365	49	identified	identify	VERB
cord-002994-1zjrunzc	365	50	in	in	ADP
cord-002994-1zjrunzc	365	51	complete	complete	ADJ
cord-002994-1zjrunzc	365	52	genome	genome	NOUN
cord-002994-1zjrunzc	365	53	sequences	sequence	NOUN
cord-002994-1zjrunzc	365	54	of	of	ADP
cord-002994-1zjrunzc	365	55	japanese	japanese	ADJ
cord-002994-1zjrunzc	365	56	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	365	57	virus	virus	NOUN
cord-002994-1zjrunzc	365	58	antigenic	antigenic	NOUN
cord-002994-1zjrunzc	365	59	structure	structure	NOUN
cord-002994-1zjrunzc	365	60	of	of	ADP
cord-002994-1zjrunzc	365	61	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	365	62	proteins	protein	VERB
cord-002994-1zjrunzc	365	63	molecular	molecular	ADJ
cord-002994-1zjrunzc	365	64	evolution	evolution	NOUN
cord-002994-1zjrunzc	365	65	of	of	ADP
cord-002994-1zjrunzc	365	66	dengue	dengue	PROPN
cord-002994-1zjrunzc	365	67	2	2	NUM
cord-002994-1zjrunzc	365	68	virus	virus	NOUN
cord-002994-1zjrunzc	365	69	in	in	ADP
cord-002994-1zjrunzc	365	70	puerto	puerto	PROPN
cord-002994-1zjrunzc	365	71	rico	rico	PROPN
cord-002994-1zjrunzc	365	72	:	:	PUNCT
cord-002994-1zjrunzc	365	73	positive	positive	ADJ
cord-002994-1zjrunzc	365	74	selection	selection	NOUN
cord-002994-1zjrunzc	365	75	in	in	ADP
cord-002994-1zjrunzc	365	76	the	the	DET
cord-002994-1zjrunzc	365	77	viral	viral	ADJ
cord-002994-1zjrunzc	365	78	envelope	envelope	NOUN
cord-002994-1zjrunzc	365	79	accompanies	accompany	VERB
cord-002994-1zjrunzc	365	80	clade	clade	NOUN
cord-002994-1zjrunzc	365	81	reintroduction	reintroduction	NOUN
cord-002994-1zjrunzc	365	82	jyh	jyh	PROPN
cord-002994-1zjrunzc	365	83	-	-	PUNCT
cord-002994-1zjrunzc	365	84	hsiung	hsiung	PROPN
cord-002994-1zjrunzc	365	85	,	,	PUNCT
cord-002994-1zjrunzc	365	86	h.	h.	NOUN
cord-002994-1zjrunzc	365	87	comparative	comparative	ADJ
cord-002994-1zjrunzc	365	88	analysis	analysis	NOUN
cord-002994-1zjrunzc	365	89	of	of	ADP
cord-002994-1zjrunzc	365	90	full	full	ADJ
cord-002994-1zjrunzc	365	91	genomic	genomic	ADJ
cord-002994-1zjrunzc	365	92	sequences	sequence	NOUN
cord-002994-1zjrunzc	365	93	among	among	ADP
cord-002994-1zjrunzc	365	94	different	different	ADJ
cord-002994-1zjrunzc	365	95	genotypes	genotype	NOUN
cord-002994-1zjrunzc	365	96	of	of	ADP
cord-002994-1zjrunzc	365	97	dengue	dengue	PROPN
cord-002994-1zjrunzc	365	98	virus	virus	PROPN
cord-002994-1zjrunzc	365	99	type	type	NOUN
cord-002994-1zjrunzc	365	100	3	3	NUM
cord-002994-1zjrunzc	365	101	nonstructural	nonstructural	ADJ
cord-002994-1zjrunzc	365	102	proteins	protein	NOUN
cord-002994-1zjrunzc	365	103	are	be	AUX
cord-002994-1zjrunzc	365	104	preferential	preferential	ADJ
cord-002994-1zjrunzc	365	105	positive	positive	ADJ
cord-002994-1zjrunzc	365	106	selection	selection	NOUN
cord-002994-1zjrunzc	365	107	targets	target	NOUN
cord-002994-1zjrunzc	365	108	in	in	ADP
cord-002994-1zjrunzc	365	109	zika	zika	NOUN
cord-002994-1zjrunzc	365	110	virus	virus	NOUN
cord-002994-1zjrunzc	365	111	and	and	CCONJ
cord-002994-1zjrunzc	365	112	related	related	ADJ
cord-002994-1zjrunzc	365	113	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	365	114	inhibition	inhibition	NOUN
cord-002994-1zjrunzc	365	115	of	of	ADP
cord-002994-1zjrunzc	365	116	interferon	interferon	NOUN
cord-002994-1zjrunzc	365	117	signaling	signal	VERB
cord-002994-1zjrunzc	365	118	by	by	ADP
cord-002994-1zjrunzc	365	119	dengue	dengue	PROPN
cord-002994-1zjrunzc	365	120	virus	virus	PROPN
cord-002994-1zjrunzc	365	121	subcellular	subcellular	ADJ
cord-002994-1zjrunzc	365	122	localization	localization	NOUN
cord-002994-1zjrunzc	365	123	and	and	CCONJ
cord-002994-1zjrunzc	365	124	membrane	membrane	NOUN
cord-002994-1zjrunzc	365	125	topology	topology	NOUN
cord-002994-1zjrunzc	365	126	of	of	ADP
cord-002994-1zjrunzc	365	127	the	the	DET
cord-002994-1zjrunzc	365	128	dengue	dengue	PROPN
cord-002994-1zjrunzc	365	129	virus	virus	PROPN
cord-002994-1zjrunzc	365	130	type	type	NOUN
cord-002994-1zjrunzc	365	131	2	2	NUM
cord-002994-1zjrunzc	365	132	non	non	ADJ
cord-002994-1zjrunzc	365	133	-	-	ADJ
cord-002994-1zjrunzc	365	134	structural	structural	ADJ
cord-002994-1zjrunzc	365	135	protein	protein	NOUN
cord-002994-1zjrunzc	365	136	4b	4b	PROPN
cord-002994-1zjrunzc	365	137	message	message	NOUN
cord-002994-1zjrunzc	365	138	in	in	ADP
cord-002994-1zjrunzc	365	139	a	a	DET
cord-002994-1zjrunzc	365	140	bottle	bottle	NOUN
cord-002994-1zjrunzc	365	141	:	:	PUNCT
cord-002994-1zjrunzc	365	142	lessons	lesson	NOUN
cord-002994-1zjrunzc	365	143	learned	learn	VERB
cord-002994-1zjrunzc	365	144	from	from	ADP
cord-002994-1zjrunzc	365	145	antagonism	antagonism	NOUN
cord-002994-1zjrunzc	365	146	of	of	ADP
cord-002994-1zjrunzc	365	147	sting	sting	NOUN
cord-002994-1zjrunzc	365	148	signalling	signal	VERB
cord-002994-1zjrunzc	365	149	during	during	ADP
cord-002994-1zjrunzc	365	150	rna	rna	PROPN
cord-002994-1zjrunzc	365	151	virus	virus	NOUN
cord-002994-1zjrunzc	365	152	infection	infection	NOUN
cord-002994-1zjrunzc	365	153	comparison	comparison	NOUN
cord-002994-1zjrunzc	365	154	of	of	ADP
cord-002994-1zjrunzc	365	155	genotypes	genotype	NOUN
cord-002994-1zjrunzc	365	156	i	i	PRON
cord-002994-1zjrunzc	365	157	and	and	CCONJ
cord-002994-1zjrunzc	365	158	iii	iii	NUM
cord-002994-1zjrunzc	365	159	in	in	ADP
cord-002994-1zjrunzc	365	160	japanese	japanese	ADJ
cord-002994-1zjrunzc	365	161	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	365	162	virus	virus	NOUN
cord-002994-1zjrunzc	365	163	reveals	reveal	VERB
cord-002994-1zjrunzc	365	164	distinct	distinct	ADJ
cord-002994-1zjrunzc	365	165	differences	difference	NOUN
cord-002994-1zjrunzc	365	166	in	in	ADP
cord-002994-1zjrunzc	365	167	their	their	PRON
cord-002994-1zjrunzc	365	168	genetic	genetic	ADJ
cord-002994-1zjrunzc	365	169	and	and	CCONJ
cord-002994-1zjrunzc	365	170	host	host	NOUN
cord-002994-1zjrunzc	365	171	diversity	diversity	PROPN
cord-002994-1zjrunzc	365	172	crystal	crystal	NOUN
cord-002994-1zjrunzc	365	173	structure	structure	NOUN
cord-002994-1zjrunzc	365	174	of	of	ADP
cord-002994-1zjrunzc	365	175	the	the	DET
cord-002994-1zjrunzc	365	176	ns3	ns3	ADJ
cord-002994-1zjrunzc	365	177	protease	protease	NOUN
cord-002994-1zjrunzc	365	178	-	-	PUNCT
cord-002994-1zjrunzc	365	179	helicase	helicase	NOUN
cord-002994-1zjrunzc	365	180	from	from	ADP
cord-002994-1zjrunzc	365	181	dengue	dengue	PROPN
cord-002994-1zjrunzc	365	182	virus	virus	NOUN
cord-002994-1zjrunzc	365	183	structural	structural	ADJ
cord-002994-1zjrunzc	365	184	and	and	CCONJ
cord-002994-1zjrunzc	365	185	functional	functional	ADJ
cord-002994-1zjrunzc	365	186	analysis	analysis	NOUN
cord-002994-1zjrunzc	365	187	of	of	ADP
cord-002994-1zjrunzc	365	188	methylation	methylation	NOUN
cord-002994-1zjrunzc	365	189	and	and	CCONJ
cord-002994-1zjrunzc	365	190	5	5	NUM
cord-002994-1zjrunzc	365	191	-rna	-rna	PROPN
cord-002994-1zjrunzc	365	192	sequence	sequence	NOUN
cord-002994-1zjrunzc	365	193	requirements	requirement	NOUN
cord-002994-1zjrunzc	365	194	of	of	ADP
cord-002994-1zjrunzc	365	195	short	short	ADJ
cord-002994-1zjrunzc	365	196	capped	cap	VERB
cord-002994-1zjrunzc	365	197	rnas	rna	NOUN
cord-002994-1zjrunzc	365	198	by	by	ADP
cord-002994-1zjrunzc	365	199	the	the	DET
cord-002994-1zjrunzc	365	200	methyltransferase	methyltransferase	NOUN
cord-002994-1zjrunzc	365	201	domain	domain	NOUN
cord-002994-1zjrunzc	365	202	of	of	ADP
cord-002994-1zjrunzc	365	203	dengue	dengue	PROPN
cord-002994-1zjrunzc	365	204	virus	virus	PROPN
cord-002994-1zjrunzc	365	205	ns5	ns5	PROPN
cord-002994-1zjrunzc	365	206	phylogeny	phylogeny	PROPN
cord-002994-1zjrunzc	365	207	,	,	PUNCT
cord-002994-1zjrunzc	365	208	selection	selection	NOUN
cord-002994-1zjrunzc	365	209	pressure	pressure	NOUN
cord-002994-1zjrunzc	365	210	and	and	CCONJ
cord-002994-1zjrunzc	365	211	evolutionary	evolutionary	ADJ
cord-002994-1zjrunzc	365	212	time	time	NOUN
cord-002994-1zjrunzc	365	213	-	-	PUNCT
cord-002994-1zjrunzc	365	214	scale	scale	NOUN
cord-002994-1zjrunzc	365	215	analysis	analysis	NOUN
cord-002994-1zjrunzc	365	216	the	the	DET
cord-002994-1zjrunzc	365	217	global	global	ADJ
cord-002994-1zjrunzc	365	218	distribution	distribution	NOUN
cord-002994-1zjrunzc	365	219	of	of	ADP
cord-002994-1zjrunzc	365	220	the	the	DET
cord-002994-1zjrunzc	365	221	arbovirus	arbovirus	NOUN
cord-002994-1zjrunzc	365	222	vectors	vector	NOUN
cord-002994-1zjrunzc	365	223	aedes	aedes	PROPN
cord-002994-1zjrunzc	365	224	aegypti	aegypti	PROPN
cord-002994-1zjrunzc	365	225	and	and	CCONJ
cord-002994-1zjrunzc	365	226	ae	ae	PROPN
cord-002994-1zjrunzc	365	227	.	.	PUNCT
cord-002994-1zjrunzc	366	1	albopictus	albopictus	PROPN
cord-002994-1zjrunzc	366	2	.	.	PUNCT
cord-002994-1zjrunzc	367	1	elife	elife	NOUN
cord-002994-1zjrunzc	367	2	does	do	AUX
cord-002994-1zjrunzc	367	3	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	367	4	to	to	PART
cord-002994-1zjrunzc	367	5	vertebrate	vertebrate	VERB
cord-002994-1zjrunzc	367	6	codon	codon	NOUN
cord-002994-1zjrunzc	367	7	usage	usage	NOUN
cord-002994-1zjrunzc	367	8	relate	relate	VERB
cord-002994-1zjrunzc	367	9	to	to	ADP
cord-002994-1zjrunzc	367	10	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	367	11	emergence	emergence	NOUN
cord-002994-1zjrunzc	367	12	potential	potential	NOUN
cord-002994-1zjrunzc	367	13	?	?	PUNCT
cord-002994-1zjrunzc	368	1	codon	codon	NOUN
cord-002994-1zjrunzc	368	2	usage	usage	NOUN
cord-002994-1zjrunzc	368	3	bias	bias	NOUN
cord-002994-1zjrunzc	368	4	:	:	PUNCT
cord-002994-1zjrunzc	368	5	causative	causative	ADJ
cord-002994-1zjrunzc	368	6	factors	factor	NOUN
cord-002994-1zjrunzc	368	7	,	,	PUNCT
cord-002994-1zjrunzc	368	8	quantification	quantification	NOUN
cord-002994-1zjrunzc	368	9	methods	method	NOUN
cord-002994-1zjrunzc	368	10	and	and	CCONJ
cord-002994-1zjrunzc	368	11	genome	genome	NOUN
cord-002994-1zjrunzc	368	12	wide	wide	ADJ
cord-002994-1zjrunzc	368	13	patterns	pattern	NOUN
cord-002994-1zjrunzc	368	14	:	:	PUNCT
cord-002994-1zjrunzc	368	15	with	with	ADP
cord-002994-1zjrunzc	368	16	emphasis	emphasis	NOUN
cord-002994-1zjrunzc	368	17	on	on	ADP
cord-002994-1zjrunzc	368	18	insect	insect	PROPN
cord-002994-1zjrunzc	368	19	genomes	genome	NOUN
cord-002994-1zjrunzc	368	20	bicluster	bicluster	NOUN
cord-002994-1zjrunzc	368	21	pattern	pattern	NOUN
cord-002994-1zjrunzc	368	22	of	of	ADP
cord-002994-1zjrunzc	368	23	codon	codon	NOUN
cord-002994-1zjrunzc	368	24	context	context	NOUN
cord-002994-1zjrunzc	368	25	usages	usage	NOUN
cord-002994-1zjrunzc	368	26	between	between	ADP
cord-002994-1zjrunzc	368	27	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	368	28	and	and	CCONJ
cord-002994-1zjrunzc	368	29	vector	vector	NOUN
cord-002994-1zjrunzc	368	30	mosquito	mosquito	PROPN
cord-002994-1zjrunzc	368	31	aedes	aedes	PROPN
cord-002994-1zjrunzc	368	32	aegypti	aegypti	PROPN
cord-002994-1zjrunzc	368	33	:	:	PUNCT
cord-002994-1zjrunzc	368	34	relevance	relevance	NOUN
cord-002994-1zjrunzc	368	35	to	to	ADP
cord-002994-1zjrunzc	368	36	infection	infection	NOUN
cord-002994-1zjrunzc	368	37	and	and	CCONJ
cord-002994-1zjrunzc	368	38	transcriptional	transcriptional	ADJ
cord-002994-1zjrunzc	368	39	response	response	NOUN
cord-002994-1zjrunzc	368	40	of	of	ADP
cord-002994-1zjrunzc	368	41	mosquito	mosquito	ADJ
cord-002994-1zjrunzc	368	42	genes	gene	NOUN
cord-002994-1zjrunzc	368	43	factors	factor	NOUN
cord-002994-1zjrunzc	368	44	shaping	shape	VERB
cord-002994-1zjrunzc	368	45	the	the	DET
cord-002994-1zjrunzc	368	46	adaptive	adaptive	ADJ
cord-002994-1zjrunzc	368	47	landscape	landscape	NOUN
cord-002994-1zjrunzc	368	48	for	for	ADP
cord-002994-1zjrunzc	368	49	arborviruses	arborvirus	NOUN
cord-002994-1zjrunzc	368	50	:	:	PUNCT
cord-002994-1zjrunzc	368	51	implications	implication	NOUN
cord-002994-1zjrunzc	368	52	for	for	ADP
cord-002994-1zjrunzc	368	53	the	the	DET
cord-002994-1zjrunzc	368	54	emergence	emergence	NOUN
cord-002994-1zjrunzc	368	55	of	of	ADP
cord-002994-1zjrunzc	368	56	disease	disease	NOUN
cord-002994-1zjrunzc	368	57	arbovirus	arbovirus	NOUN
cord-002994-1zjrunzc	368	58	evolution	evolution	NOUN
cord-002994-1zjrunzc	368	59	in	in	ADP
cord-002994-1zjrunzc	368	60	vivo	vivo	NOUN
cord-002994-1zjrunzc	368	61	is	be	AUX
cord-002994-1zjrunzc	368	62	constrained	constrain	VERB
cord-002994-1zjrunzc	368	63	by	by	ADP
cord-002994-1zjrunzc	368	64	host	host	NOUN
cord-002994-1zjrunzc	368	65	alternation	alternation	NOUN
cord-002994-1zjrunzc	368	66	pathogenesis	pathogenesis	NOUN
cord-002994-1zjrunzc	368	67	of	of	ADP
cord-002994-1zjrunzc	368	68	modoc	modoc	PROPN
cord-002994-1zjrunzc	368	69	virus	virus	PROPN
cord-002994-1zjrunzc	368	70	(	(	PUNCT
cord-002994-1zjrunzc	368	71	flaviviridae	flaviviridae	PROPN
cord-002994-1zjrunzc	368	72	;	;	PUNCT
cord-002994-1zjrunzc	368	73	flavivirus	flavivirus	NOUN
cord-002994-1zjrunzc	368	74	)	)	PUNCT
cord-002994-1zjrunzc	368	75	in	in	ADP
cord-002994-1zjrunzc	368	76	persistently	persistently	ADV
cord-002994-1zjrunzc	368	77	infected	infect	VERB
cord-002994-1zjrunzc	368	78	hamsters	hamster	NOUN
cord-002994-1zjrunzc	368	79	latent	latent	ADJ
cord-002994-1zjrunzc	368	80	infection	infection	NOUN
cord-002994-1zjrunzc	368	81	of	of	ADP
cord-002994-1zjrunzc	368	82	rio	rio	PROPN
cord-002994-1zjrunzc	368	83	bravo	bravo	PROPN
cord-002994-1zjrunzc	368	84	virus	virus	NOUN
cord-002994-1zjrunzc	368	85	in	in	ADP
cord-002994-1zjrunzc	368	86	salivary	salivary	ADJ
cord-002994-1zjrunzc	368	87	glands	gland	NOUN
cord-002994-1zjrunzc	368	88	of	of	ADP
cord-002994-1zjrunzc	368	89	bats	bat	NOUN
cord-002994-1zjrunzc	368	90	insect	insect	NOUN
cord-002994-1zjrunzc	368	91	-	-	PUNCT
cord-002994-1zjrunzc	368	92	specific	specific	ADJ
cord-002994-1zjrunzc	368	93	flaviviruses	flavivirus	NOUN
cord-002994-1zjrunzc	368	94	:	:	PUNCT
cord-002994-1zjrunzc	368	95	a	a	DET
cord-002994-1zjrunzc	368	96	systematic	systematic	ADJ
cord-002994-1zjrunzc	368	97	review	review	NOUN
cord-002994-1zjrunzc	368	98	of	of	ADP
cord-002994-1zjrunzc	368	99	their	their	PRON
cord-002994-1zjrunzc	368	100	discovery	discovery	NOUN
cord-002994-1zjrunzc	368	101	,	,	PUNCT
cord-002994-1zjrunzc	368	102	host	host	NOUN
cord-002994-1zjrunzc	368	103	range	range	NOUN
cord-002994-1zjrunzc	368	104	,	,	PUNCT
cord-002994-1zjrunzc	368	105	mode	mode	NOUN
cord-002994-1zjrunzc	368	106	of	of	ADP
cord-002994-1zjrunzc	368	107	transmission	transmission	NOUN
cord-002994-1zjrunzc	368	108	,	,	PUNCT
cord-002994-1zjrunzc	368	109	superinfection	superinfection	NOUN
cord-002994-1zjrunzc	368	110	exclusion	exclusion	NOUN
cord-002994-1zjrunzc	368	111	potential	potential	NOUN
cord-002994-1zjrunzc	368	112	and	and	CCONJ
cord-002994-1zjrunzc	368	113	genomic	genomic	NOUN
cord-002994-1zjrunzc	368	114	organization	organization	NOUN
cord-002994-1zjrunzc	368	115	yellow	yellow	ADJ
cord-002994-1zjrunzc	368	116	fever	fever	NOUN
cord-002994-1zjrunzc	368	117	virus	virus	NOUN
cord-002994-1zjrunzc	368	118	:	:	PUNCT
cord-002994-1zjrunzc	368	119	genetic	genetic	ADJ
cord-002994-1zjrunzc	368	120	and	and	CCONJ
cord-002994-1zjrunzc	368	121	phenotypic	phenotypic	ADJ
cord-002994-1zjrunzc	368	122	diversity	diversity	NOUN
cord-002994-1zjrunzc	368	123	and	and	CCONJ
cord-002994-1zjrunzc	368	124	implications	implication	NOUN
cord-002994-1zjrunzc	368	125	for	for	ADP
cord-002994-1zjrunzc	368	126	detection	detection	NOUN
cord-002994-1zjrunzc	368	127	,	,	PUNCT
cord-002994-1zjrunzc	368	128	prevention	prevention	NOUN
cord-002994-1zjrunzc	368	129	and	and	CCONJ
cord-002994-1zjrunzc	368	130	therapy	therapy	NOUN
cord-002994-1zjrunzc	368	131	identification	identification	NOUN
cord-002994-1zjrunzc	368	132	of	of	ADP
cord-002994-1zjrunzc	368	133	host	host	NOUN
cord-002994-1zjrunzc	368	134	genes	gene	NOUN
cord-002994-1zjrunzc	368	135	leading	lead	VERB
cord-002994-1zjrunzc	368	136	to	to	ADP
cord-002994-1zjrunzc	368	137	west	west	PROPN
cord-002994-1zjrunzc	368	138	nile	nile	PROPN
cord-002994-1zjrunzc	368	139	virus	virus	PROPN
cord-002994-1zjrunzc	368	140	encephalitis	encephalitis	NOUN
cord-002994-1zjrunzc	368	141	in	in	ADP
cord-002994-1zjrunzc	368	142	mice	mice	NOUN
cord-002994-1zjrunzc	368	143	brain	brain	NOUN
cord-002994-1zjrunzc	368	144	using	use	VERB
cord-002994-1zjrunzc	368	145	rna	rna	NOUN
cord-002994-1zjrunzc	368	146	-	-	PUNCT
cord-002994-1zjrunzc	368	147	seq	seq	NOUN
cord-002994-1zjrunzc	368	148	analysis	analysis	NOUN
cord-002994-1zjrunzc	368	149	zika	zika	NOUN
cord-002994-1zjrunzc	368	150	virus	virus	NOUN
cord-002994-1zjrunzc	368	151	:	:	PUNCT
cord-002994-1zjrunzc	368	152	an	an	DET
cord-002994-1zjrunzc	368	153	update	update	NOUN
cord-002994-1zjrunzc	368	154	on	on	ADP
cord-002994-1zjrunzc	368	155	epidemiology	epidemiology	NOUN
cord-002994-1zjrunzc	368	156	,	,	PUNCT
cord-002994-1zjrunzc	368	157	pathology	pathology	NOUN
cord-002994-1zjrunzc	368	158	,	,	PUNCT
cord-002994-1zjrunzc	368	159	molecular	molecular	ADJ
cord-002994-1zjrunzc	368	160	biology	biology	NOUN
cord-002994-1zjrunzc	368	161	,	,	PUNCT
cord-002994-1zjrunzc	368	162	and	and	CCONJ
cord-002994-1zjrunzc	368	163	animal	animal	NOUN
cord-002994-1zjrunzc	368	164	model	model	NOUN
cord-002994-1zjrunzc	368	165	genome	genome	NOUN
cord-002994-1zjrunzc	368	166	-	-	PUNCT
cord-002994-1zjrunzc	368	167	wide	wide	ADJ
cord-002994-1zjrunzc	368	168	analysis	analysis	NOUN
cord-002994-1zjrunzc	368	169	reveals	reveal	VERB
cord-002994-1zjrunzc	368	170	class	class	NOUN
cord-002994-1zjrunzc	368	171	and	and	CCONJ
cord-002994-1zjrunzc	368	172	gene	gene	NOUN
cord-002994-1zjrunzc	368	173	specific	specific	ADJ
cord-002994-1zjrunzc	368	174	codon	codon	NOUN
cord-002994-1zjrunzc	368	175	usage	usage	NOUN
cord-002994-1zjrunzc	368	176	adaptation	adaptation	NOUN
cord-002994-1zjrunzc	368	177	in	in	ADP
cord-002994-1zjrunzc	368	178	avian	avian	ADJ
cord-002994-1zjrunzc	368	179	paramyxoviruses	paramyxovirus	NOUN
cord-002994-1zjrunzc	368	180	1	1	NUM
cord-002994-1zjrunzc	368	181	an	an	DET
cord-002994-1zjrunzc	368	182	isogenic	isogenic	ADJ
cord-002994-1zjrunzc	368	183	blood	blood	NOUN
cord-002994-1zjrunzc	368	184	-	-	PUNCT
cord-002994-1zjrunzc	368	185	brain	brain	NOUN
cord-002994-1zjrunzc	368	186	barrier	barrier	NOUN
cord-002994-1zjrunzc	368	187	model	model	NOUN
cord-002994-1zjrunzc	368	188	comprising	comprise	VERB
cord-002994-1zjrunzc	368	189	brain	brain	NOUN
cord-002994-1zjrunzc	368	190	endothelial	endothelial	NOUN
cord-002994-1zjrunzc	368	191	cells	cell	NOUN
cord-002994-1zjrunzc	368	192	,	,	PUNCT
cord-002994-1zjrunzc	368	193	astrocytes	astrocyte	NOUN
cord-002994-1zjrunzc	368	194	and	and	CCONJ
cord-002994-1zjrunzc	368	195	neurons	neuron	NOUN
cord-002994-1zjrunzc	368	196	derived	derive	VERB
cord-002994-1zjrunzc	368	197	from	from	ADP
cord-002994-1zjrunzc	368	198	human	human	ADJ
cord-002994-1zjrunzc	368	199	induced	induced	ADJ
cord-002994-1zjrunzc	368	200	pluripotent	pluripotent	ADJ
cord-002994-1zjrunzc	368	201	stem	stem	NOUN
cord-002994-1zjrunzc	368	202	cells	cell	NOUN
cord-002994-1zjrunzc	368	203	efficient	efficient	ADJ
cord-002994-1zjrunzc	368	204	and	and	CCONJ
cord-002994-1zjrunzc	368	205	rapid	rapid	ADJ
cord-002994-1zjrunzc	368	206	derivation	derivation	NOUN
cord-002994-1zjrunzc	368	207	of	of	ADP
cord-002994-1zjrunzc	368	208	primitive	primitive	ADJ
cord-002994-1zjrunzc	368	209	neural	neural	ADJ
cord-002994-1zjrunzc	368	210	stem	stem	NOUN
cord-002994-1zjrunzc	368	211	cells	cell	NOUN
cord-002994-1zjrunzc	368	212	and	and	CCONJ
cord-002994-1zjrunzc	368	213	generation	generation	NOUN
cord-002994-1zjrunzc	368	214	of	of	ADP
cord-002994-1zjrunzc	368	215	brain	brain	NOUN
cord-002994-1zjrunzc	368	216	subtype	subtype	NOUN
cord-002994-1zjrunzc	368	217	neurons	neuron	NOUN
cord-002994-1zjrunzc	368	218	from	from	ADP
cord-002994-1zjrunzc	368	219	human	human	ADJ
cord-002994-1zjrunzc	368	220	pluripotent	pluripotent	ADJ
cord-002994-1zjrunzc	368	221	stem	stem	NOUN
cord-002994-1zjrunzc	368	222	cells	cell	NOUN
cord-002994-1zjrunzc	368	223	this	this	DET
cord-002994-1zjrunzc	368	224	research	research	NOUN
cord-002994-1zjrunzc	368	225	received	receive	VERB
cord-002994-1zjrunzc	368	226	no	no	DET
cord-002994-1zjrunzc	368	227	specific	specific	ADJ
cord-002994-1zjrunzc	368	228	grant	grant	NOUN
cord-002994-1zjrunzc	368	229	from	from	ADP
cord-002994-1zjrunzc	368	230	any	any	DET
cord-002994-1zjrunzc	368	231	funding	funding	NOUN
cord-002994-1zjrunzc	368	232	agency	agency	NOUN
cord-002994-1zjrunzc	368	233	in	in	ADP
cord-002994-1zjrunzc	368	234	the	the	DET
cord-002994-1zjrunzc	368	235	public	public	ADJ
cord-002994-1zjrunzc	368	236	,	,	PUNCT
cord-002994-1zjrunzc	368	237	commercial	commercial	ADJ
cord-002994-1zjrunzc	368	238	,	,	PUNCT
