# bib

id: cord-288821-nalulzfo
author: Bastien, Nathalie
title: Human Coronavirus NL63 Infection in Canada
date: 2005-02-15
extension: .txt
mime: text/plain
words: 1873
sentence: 73
flesch: 52
cache: cache/cord-288821-nalulzfo.txt
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summary:
  key: cord-288821-nalulzfo authors: Bastien, Nathalie; Anderson, Kelly; Hart, Laura; Caeseele, Paul Van; Brandt, Ken; Milley, Doug; Hatchette, Todd; Weiss, Elise C.; Li, Yan title: Human Coronavirus NL63 Infection in Canada date: 2005-02-15 journal: J Infect Dis DOI: 10.1086/426869 sha: doc_id: 288821 cord_uid: nalulzfo The isolation of human coronavirus NL63 (HCoV-NL63) in The Netherlands raised questions about its contribution to respiratory illness. HCoV-NL63 was found in 7 of the 8 patients from this outbreak whose samples were analyzed in this study.


id: cord-287167-rc9a5xs5
author: Kyaw, Win Mar
title: Healthcare worker acute respiratory illness cluster in 2020: Could it be from COVID-19?
date: 2020-07-23
extension: .txt
mime: text/plain
words: 1122
sentence: 44
flesch: 53
cache: cache/cord-287167-rc9a5xs5.txt
txt: txt/cord-287167-rc9a5xs5.txt
summary:
  7 During the COVID-19 pandemic, a team of public healthtrained personnel maintained close monitoring of staff sickness reporting to identify ARI clusters among the 12,000 HCWs working at the 1,600-bed TTSH and its collocated 330-bed National Centre for Infectious Diseases, the national referral centre for COVID-19 response. We examined the epidemiology of ARI clusters identified in HCWs in the first 27 weeks of 2020, and we compared them with the ARI clusters in 2019.


id: cord-259338-q3kw6n9o
author: Jean, Sim Xiang Ying
date: 2020-11-04
extension: .txt
mime: text/plain
words: 2565
sentence: 101
flesch: 43
cache: cache/cord-259338-q3kw6n9o.txt
txt: txt/cord-259338-q3kw6n9o.txt
title:
  Utilizing the Electronic Health Records to Create a Syndromic Staff Surveillance System During the COVID-19 outbreak

summary:
  World Health Organisation Coronavirus disease (COVID-19) Pandemic Containment of COVID-19 cases among healthcare workers: The role of surveillance, early detection, and outbreak management Healthcare workers in Singapore infected with COVID-19 Monitoring approaches for health-care workers during the COVID-19 pandemic Use of a Real-Time Locating System for Contact Tracing of Health Care Workers During the COVID-19 Pandemic at an Infectious Disease Center in Singapore: Validation Study Responding to the COVID-19 outbreak in Singapore: Staff protection and staff temperature and sickness surveillance systems Overview of sentinel systems for hospitalized severe acute respiratory infections (SARI) represented in the weekly EuroFlu surveillance bulletin COVID-19 and the gastrointestinal tract: more than meets the eye Emergency department syndromic surveillance providing early warning of seasonal respiratory activity in England Syndromic surveillance for local outbreaks of lower-respiratory infections: would it work Reduction in healthcare-associated respiratory viral infections during a COVID-19 outbreak Our team would like to acknowledge all staff within the institution who have contributed in COVID-19 pandemic efforts. Our study demonstrates the feasibility in utilizing the EHR in the detection of ARI clusters amongst hospital staff.


id: cord-337747-7sb03moe
author: Lagare, Adamou
date: 2019-10-11
extension: .txt
mime: text/plain
words: 2652
sentence: 89
flesch: 32
cache: cache/cord-337747-7sb03moe.txt
txt: txt/cord-337747-7sb03moe.txt
title:
  Molecular detection of respiratory pathogens among children aged younger than 5 years hospitalized with febrile acute respiratory infections: A prospective hospital‐based observational study in Niamey, Niger

summary:
  Influenza sentinel surveillance among patients with influenza-like-illness and severe acute respiratory illness within the framework of the National Reference Laboratory Detection of respiratory viruses by real-time polymerase chain reaction in outpatients with acute respiratory infection Sentinel surveillance for influenza and other respiratory viruses in Cote d'Ivoire Viral etiology of severe acute respiratory infections in hospitalized children in Cameroon Respiratory viral coinfections identified by a 10-plex real-time reverse-transcription polymerase chain reaction assay in patients hospitalized with severe acute respiratory illness-South Africa Human bocavirus, coronavirus, and polyomavirus detected among patients hospitalised with severe acute respiratory illness in South Africa Viral etiologies of lower respiratory tract infections among Egyptian children under five years of age Viral etiology of respiratory infections in children under 5 years old living in tropical rural areas of Senegal: the EVIRA project Clinical and epidemiological characteristics of acute respiratory virus infections in Vietnamese children Epidemiology of acute respiratory infections in children in Guangzhou: a three-year study Bacterial and viral pathogen spectra of acute respiratory infections in under-5 children in hospital settings in Dhaka city Viral and atypical bacterial detection in acute respiratory infection in children under five years Viral and atypical bacterial etiology of acute respiratory infections in children under 5 years old living in a rural tropical area of Madagascar Viral etiologies of acute respiratory infections among hospitalized Vietnamese children in Ho Chi Minh City Seasonal trends of viral respiratory tract infections in the tropics Investigation of respiratory syncytial virus-associated deaths among US children aged <2 years Clinical and molecular epidemiology of human parainfluenza viruses 1-4 in children from Viet Nam Viral etiology of respiratory tract infections in children at the pediatric hospital in Ouagadougou (Burkina Faso) Spatiotemporal circulation of influenza viruses in 5 African countries during 2008-2009: a collaborative study of the Institut Pasteur International Network Influenza transmission during a oneyear period (2009-2010) in a Sahelian city: low temperature plays a major role The role of multiplex PCR test in identification of bacterial pathogens in lower respiratory tract infections Clinico-pathological study of atypical pathogens in community-acquired pneumonia: a prospective study Serotype distribution and antimicrobial sensitivity profile of Streptococcus pneumoniae carried in healthy toddlers before PCV13 introduction in Niamey Response to conjugate Haemophilus influenzae B vaccine among infants in Niamey, Niger Etiology and factors associated with pneumonia in children under 5 years of age in Mali: a prospective case-control study Performance of surveillance case definitions in detecting respiratory syncytial virus infection among young children hospitalized with severe respiratory illness-South Africa Molecular detection of respiratory pathogens among children aged younger than 5 years hospitalized with febrile acute respiratory infections: A prospective hospital-based observational study in Niamey We are thankful to the MoH, CERMES, and clinicians and nurses at the HNN and HNL for their contributions. In Niger, acute respiratory infections (ARIs) are the second most common cause of death in children aged younger than 5 years.


id: cord-316217-ynh8d853
author: Yoshihara, Keisuke
title: Influenza B associated paediatric acute respiratory infection hospitalization in central vietnam
date: 2019-02-28
extension: .txt
mime: text/plain
words: 2734
sentence: 102
flesch: 26
cache: cache/cord-316217-ynh8d853.txt
txt: txt/cord-316217-ynh8d853.txt
summary:
  The evolutionary dynamics of human influenza B virus Evolution of influenza A and B viruses: conservation of structural features in the hemagglutinin genes Molecular epidemiologic and clinical characteristics of influenza B-associated complications among hospitalized patients during an outbreak in Taiwan Phylogenetic and evolutionary history of influenza B viruses Cocirculation of two distinct evolutionary lineages of influenza type B virus since 1983 Epidemiological and virological characteristics of influenza viruses circulating in Cambodia from Differing epidemiological dynamics of influenza B virus lineages in Guangzhou, southern China Local persistence and global dissemination play a significant role in the circulation of influenza B viruses in Leyte Island Molecular Epidemiology and Phylogenetic Analyses of Influenza B Virus in Thailand during Viral pathogens associated with acute respiratory infections in central vietnamese children Integrated approach to child health in developing countries Burden of disease caused by Haemophilus influenzae type b in children younger than 5 years: global estimates Genetic analysis of influenza B viruses isolated in Uganda during the 2009-2010 seasons Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data MEGA6: molecular evolutionary genetics analysis version 6.0 Interrupted time series regression for the evaluation of public health interventions: a tutorial Time series regression studies in environmental epidemiology Impact of 2009 pandemic influenza among Vietnamese children based on a population-based prospective surveillance from 2007 to 2011. The gene structure and replication of influenza virus Influenza B lineage circulation and hospitalization rates in a subtropical city Surveillance and molecular characterization of human influenza B viruses during 2006-2010 revealed co-circulation of Yamagata-like and Victoria-like strains in eastern India Epidemiology and seasonality of respiratory tract virus infections in the tropics Influenza surveillance in Indonesia Influenza viruses in Thailand: 7 years of sentinel surveillance data Epidemiological and virological characteristics of influenza in the Western Pacific Region of the World Health Organization Influenza B virus genome: assignment of viral polypeptides to RNA segments Influenza B virus in seals Epidemiological, antigenic and genetic characteristics of seasonal influenza A(H1N1), A(H3N2) and B influenza viruses: basis for the WHO recommendation on the composition of influenza vaccines for use in the 2009-2010 northern hemisphere season Reassortment and insertion-deletion are strategies for the evolution of influenza B viruses in nature


id: cord-349279-wbb7h2zu
author: Walker, Gregory J.
date: 2019-05-07
extension: .txt
mime: text/plain
words: 2771
sentence: 112
flesch: 39
cache: cache/cord-349279-wbb7h2zu.txt
txt: txt/cord-349279-wbb7h2zu.txt
title:
  Viruses associated with acute respiratory infection in a community‐based cohort of healthy New Zealand children

summary:
  19 Respiratory viruses cause significant morbidity, particularly for Disability-adjusted life years (DALYs) for 291 diseases and injuries in 21 regions, 1990-2010: a systematic analysis for the Global Burden of Disease Study Global burden of respiratory infections due to seasonal influenza in young children: a systematic review and meta-analysis Respiratory viruses and influenza-like illness: epidemiology and outcomes in children aged 6 months to 10 years in a multi-country population sample Community epidemiology of human metapneumovirus, human coronavirus NL63, and other respiratory viruses in healthy preschool-aged children using parentcollected specimens Community-wide, contemporaneous circulation of a broad spectrum of human rhinoviruses in healthy Australian preschool-aged children during a 12-month period Epidemiology of human respiratory viruses in children with acute respiratory tract infection in a 3-year hospital-based survey in Northern Italy Viral bacterial coinfection of the respiratory tract during early childhood The role of infections and coinfections with newly identified and emerging respiratory viruses in children Molecular diagnosis of respiratory viruses New molecular virus detection methods and their clinical value in lower respiratory tract infections in children Respiratory viral detections during symptomatic and asymptomatic periods in young Andean children Environmental factors affecting the transmission of respiratory viruses Impact of pollution, climate, and sociodemographic factors on spatiotemporal dynamics of seasonal respiratory viruses Incidence and viral aetiologies of acute respiratory illnesses (ARIs) in the United States: a population-based study Implementing hospital-based surveillance for severe acute respiratory infections caused by influenza and other respiratory pathogens in New Zealand Southern Hemisphere influenza and vaccine effectiveness research and surveillance. Respiratory viruses are commonly detected in both symptomatic and asymptomatic periods.


id: cord-010170-rwf52bly
author: Sutrisna, B.
date: 1991-08-24
extension: .txt
mime: text/plain
words: 2940
sentence: 102
flesch: 42
cache: cache/cord-010170-rwf52bly.txt
txt: txt/cord-010170-rwf52bly.txt
title:
  Randomised, controlled trial of effectiveness of ampicillin in mild acute respiratory infections in Indonesian children

summary:
  Even if antibiotics are widely available, use of ineffective treatment for many mild ARI cases will substantially reduce the cost-effectiveness of ARI treatments in general. key: cord-010170-rwf52bly authors: Sutrisna, B.; Frerichs, R.R.; Reingold, A.L. title: Randomised, controlled trial of effectiveness of ampicillin in mild acute respiratory infections in Indonesian children date: 1991-08-24 journal: Lancet DOI: 10.1016/0140-6736(91)90544-y sha: doc_id: 10170 cord_uid: rwf52bly The recommended treatment for mild acute respiratory infections (ARI) in children is supportive care only, but many physicians, especially in developing countries, continue to prescribe antibiotic treatment because they believe it prevents progression to more severe ARI.


id: cord-265257-p9f0pl3y
author: Masoud, Khaldoun
title: Viral Etiology of Acute Respiratory Infections in Pediatric Patients in Lebanon
date: 2019-11-01
extension: .txt
mime: text/plain
words: 2944
sentence: 151
flesch: 47
cache: cache/cord-265257-p9f0pl3y.txt
txt: txt/cord-265257-p9f0pl3y.txt
summary:
  Influenza Other Respir Viruses Viral coinfection in acute respiratory infection in Mexican children treated by the emergency service: A cross-sectional study Respiratory Viral Infections in Infants: Causes, Clinical Symptoms, Virology, and Immunology RATE AND INFLUENCE OF RESPIRATORY VIRUS CO-INFECTION ON PANDEMIC (H1N1) INFLUENZA DISEASE Dual Infection of Infants by Human Metapneumovirus and Human Respiratory Syncytial Virus Is Strongly Associated with Severe Bronchiolitis Single versus dual respiratory virus infections in hospitalized infants: impact on clinical course of disease and interferon-gamma response Human metapneumovirus infections cause similar symptoms and clinical severity as respiratory syncytial virus infections Viral and atypical bacterial detection in acute respiratory infection in children under five years Influenza Other Respir Viruses Use of antibiotics for adult upper respiratory infections in outpatient settings: A national ambulatory network study Excessive Antibiotic Use for Acute Respiratory Infections in the United States Viral Infections of the Lower Respiratory Tract: Old Viruses, New Viruses, and the Role of Diagnosis Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infections Etiology, seasonality and clinical characterization of viral respiratory infections among hospitalized children in Beirut, Lebanon Viral and atypical bacterial aetiologies of infection in hospitalised patients admitted with clinical suspicion of influenza in Thailand, Vietnam and Indonesia.


id: cord-288332-y15g1yak
author: Choi, Eunjin
title: Clinical and laboratory profiles of hospitalized children with acute respiratory virus infection
date: 2018-06-25
extension: .txt
mime: text/plain
words: 3141
sentence: 129
flesch: 43
cache: cache/cord-288332-y15g1yak.txt
txt: txt/cord-288332-y15g1yak.txt
summary:
  The role of infections and coinfections with newly identified and emerging respiratory viruses in children Etiology and clinical outcomes of acute respiratory virus infection in hospitalized adults Detection of viral and bacterial pathogens in hospitalized children with acute respiratory illnesses Viral etiology and the impact of codetection in young children presenting with influenza-like illness Dual respiratory virus infections The male predominance in the incidence of infectious diseases in children: a postulated explanation for disparities in the literature Prevalence of respiratory viruses among children hospitalized from respiratory infections in Shenzhen, China Clinical disease severity of respiratory viral co-infection versus single viral infection: a systematic review and meta-analysis Etiology, seasonality, and clinical characterization of viral respiratory infections among hospitalized children in Beirut, Lebanon Clinical utility of PCR for common viruses in acute respiratory illness Aetiological role of common respiratory viruses in acute lower respiratory infections in children under five years: a systematic review and meta-analysis Respiratory viral detection in children and adults: comparing asymptomatic controls and patients with community-acquired pneumonia Fever and the thermal regulation of immunity: the immune system feels the heat Epidemiology, clinical characteristics, laboratory findings and severity of respiratory syncytial virus acute lower respiratory infection in Malaysian children Role of viral respiratory infections in asthma and asthma exacerbations A molecular epidemiological study of respiratory viruses detected in Japanese children with acute wheezing illness Rhinovirus and the initiation of asthma The neutrophil-lymphocyte count ratio in patients with community-acquired pneumonia Are there standardized cutoff values for neutrophil-lymphocyte ratios in bacteremia or sepsis? Development and internal validation of a clinical rule to improve antibiotic use in children presenting to primary care with acute respiratory tract infection and cough: a prognostic cohort study A new laboratory-based surveillance system (Respiratory DataMart System) for influenza and other respiratory viruses in England: results and experience from No potential conflict of interest relevant to this article was re ported.


id: cord-317912-v2wovcqd
author: Akmatov, Manas K.
date: 2012-11-14
extension: .txt
mime: text/plain
words: 3495
sentence: 146
flesch: 53
cache: cache/cord-317912-v2wovcqd.txt
txt: txt/cord-317912-v2wovcqd.txt
title:
  Equivalence of Self- and Staff-Collected Nasal Swabs for the Detection of Viral Respiratory Pathogens

summary:
  Due to much lower expenses for personnel and travel, selfcollection would be a highly cost-efficient way to obtain diagnostic nasal swabs in medium and large scale population-based studies on ARI epidemiology [3] . The amount of β-actin DNA per swab was higher in the self- than in the staff-collected swabs (p = 0.008).


id: cord-257248-aii0tj9x
author: O'Grady, K.F.
date: 2016-02-22
extension: .txt
mime: text/plain
words: 3365
sentence: 117
flesch: 35
cache: cache/cord-257248-aii0tj9x.txt
txt: txt/cord-257248-aii0tj9x.txt
title:
  Prevalence, codetection and seasonal distribution of upper airway viruses and bacteria in children with acute respiratory illnesses with cough as a symptom

summary:
  Bacterial colonization dampens influenza-mediated acute lung injury via induction of M2 alveolar macrophages Association between respiratory infections in early life and later asthma is independent of virus type The development of chronic cough in children following presentation to a tertiary paediatric emergency department with acute respiratory illness: study protocol for a prospective cohort study Successful application of a simple specimen transport method for the conduct of respiratory virus surveillance in remote Indigenous communities in Australia Mailed versus frozen transport of nasal swabs for surveillance of respiratory bacteria in remote Indigenous communities in Australia Aetiological role of common respiratory viruses in acute lower respiratory infections in children under five years: a systematic review and meta-analysis The co-pathogenesis of influenza viruses with bacteria in the lung Non-typeable Haemophilus influenzae, an under-recognised pathogen Airway microbiota and acute respiratory infection in children Nasopharyngeal microbiota in healthy children and pneumonia patients Viruses and bacteria in sputum samples of children with community-acquired pneumonia Acute respiratory infection in children from developing nations: a multi-level study. Viral bacterial co-infection of the respiratory tract during early childhood Cough formation in viral infections in children Is virus coinfection a predictor of severity in children with viral respiratory infections? Staphylococcus aureus colonization is associated with wheeze and asthma among US children and young adults A prospective study of agents associated with acute respiratory infection among young American Indian children Three-weekly doses of azithromycin for indigenous infants hospitalized with bronchiolitis: a multicentre, randomized, placebo-controlled trial Upper airway viruses and bacteria detection in clinical pneumonia in a population with high nasal colonisation do not relate to clinical signs Epidemiology and etiology of childhood pneumonia in 2010: estimates of incidence, severe morbidity, mortality, underlying risk factors and causative pathogens for 192 countries Evidence for a causal relationship between respiratory syncytial virus infection and asthma Does the microbiota regulate immune responses outside the gut?


id: cord-292948-1n5ej08f
author: Masse, Shirley
date: 2020-06-10
extension: .txt
mime: text/plain
words: 3878
sentence: 172
flesch: 50
cache: cache/cord-292948-1n5ej08f.txt
txt: txt/cord-292948-1n5ej08f.txt
title:
  Epidemiology and Clinical Symptoms Related to Seasonal Coronavirus Identified in Patients with Acute Respiratory Infections Consulting in Primary Care over Six Influenza Seasons (2014–2020) in France

summary:
  Fever and malaise were less frequent in HCoV patients than in influenza patients, while sore throat, dyspnoea, rhinorrhoea, and conjunctivitis were more associated with HCoV positivity. Fever and malaise were less frequent in HCoV patients than in influenza patients, while sore throat, dyspnoea, rhinorrhoea, and conjunctivitis were more frequently associated with HCoV positivity (Table 4) .


id: cord-300019-8vxqr3mc
author: Shi, Ting
date: 2019-03-08
extension: .txt
mime: text/plain
words: 3968
sentence: 157
flesch: 39
cache: cache/cord-300019-8vxqr3mc.txt
txt: txt/cord-300019-8vxqr3mc.txt
title:
  The Etiological Role of Common Respiratory Viruses in Acute Respiratory Infections in Older Adults: A Systematic Review and Meta-analysis

summary:
  Communityacquired pneumonia requiring hospitalization among U.S. children Better tests, better care: improved diagnostics for infectious diseases Respiratory viruses in exacerbations of chronic obstructive pulmonary disease requiring hospitalisation: a case-control study Identification of respiratory viruses in adults: nasopharyngeal versus oropharyngeal sampling Lower respiratory tract virus findings in mechanically ventilated patients with severe community-acquired pneumonia Time lines of infection and disease in human influenza: a review of volunteer challenge studies Flu Watch Group. We aimed to identify all case-control studies investigating the potential role of respiratory viruses in the etiology of ARI in older adults aged ≥65 years.


id: cord-001045-jm60nxc2
author: DeLisle, Sylvain
date: 2013-08-13
extension: .txt
mime: text/plain
words: 4334
sentence: 164
flesch: 39
cache: cache/cord-001045-jm60nxc2.txt
txt: txt/cord-001045-jm60nxc2.txt
title:
  Using the Electronic Medical Record to Identify Community-Acquired Pneumonia: Toward a Replicable Automated Strategy

summary:
  Specialized software development is not required for automated text analyses to help identify pneumonia patients. Prior attempts to automatically identify pneumonia patients through medical records have concentrated on diagnostic codes assigned after hospital discharge.


id: cord-287063-kheek4lx
author: Carroll, Kecia N.
title: Influence of maternal asthma on the cause and severity of infant acute respiratory tract infections
date: 2012-02-14
extension: .txt
mime: text/plain
words: 4761
sentence: 165
flesch: 39
cache: cache/cord-287063-kheek4lx.txt
txt: txt/cord-287063-kheek4lx.txt
summary:
  In summary, infant HRV infections requiring clinical care were more strongly associated with having a mother with atopic asthma than infant RSV infections. Future longitudinal investigations successful at preventing or modifying the host response to infant viral infections will provide insight into the relationship of infant viral infections and early childhood asthma, as will investigations that assess the atopic host and nonatopic host response to select respiratory pathogens.


id: cord-326122-5m1727m1
author: Wishaupt, Jérôme O.
title: PCR testing for Paediatric Acute Respiratory Tract Infections
date: 2014-08-04
extension: .txt
mime: text/plain
words: 4910
sentence: 210
flesch: 36
cache: cache/cord-326122-5m1727m1.txt
txt: txt/cord-326122-5m1727m1.txt
summary:
  Diagnosis and management of bronchiolitis Bronchiolitis: recent evidence on diagnosis and management Bronchiolitis management before and after the AAP guidelines Manual of Childhood Infections, The Blue Book Additional diagnostic yield of adding serology to PCR in diagnosing viral acute respiratory infections in Kenyan patients 5 years of age and older Comparison of multiplex PCR assays and conventional techniques for the diagnostic of respiratory virus infections in children admitted to hospital with an acute respiratory illness Currently used nucleic acid amplification tests for the detection of viruses and atypicals in acute respiratory infections Evaluation of respiratory syncytial virus detection by rapid antigen tests in childhood Prospective evaluation of rapid antigen tests for diagnosis of respiratory syncytial virus and human metapneumovirus infections Comparison of BD Directigen EZ RSV and Binax NOW RSV tests for rapid detection of respiratory syncytial virus from nasopharyngeal aspirates in a pediatric population Clinical and financial benefits of rapid detection of respiratory viruses: an outcomes study A randomized, controlled trial of the impact of early and rapid diagnosis of viral infections in children brought to an emergency department with febrile respiratory tract illnesses Cost-effectiveness of rapid diagnosis of viral respiratory tract infections in pediatric patients New molecular virus detection methods and their clinical value in lower respiratory tract infections in children Clinical and economical impact of multiplex respiratory virus assays Impact of rapid detection of viral and atypical bacterial pathogens by real-time polymerase chain reaction for patients with lower respiratory tract infection Does real-time PCR for respiratory virusses change antibiotic use in children admitted at the pediatric intensive care unit with lower respiratory tract infection? Prospective multicenter study of viral etiology and hospital length of stay in children with severe bronchiolitis Frequent detection of respiratory viruses without symptoms: toward defining clinically relevant cutoff values Respiratory pathogens in children with and without respiratory symptoms Expanding roles for CD4(+) T cells in immunity to viruses Bordetella pertussis and mixed infections Infection with multiple viruses is not associated with increased disease severity in children with bronchiolitis Multiple versus single virus respiratory infections: viral load and clinical disease severity in hospitalized children Viral respiratory co-infections in pediatric patients admitted for acute respiratory infection and their impact on clinical severity Clinical risk factors are more relevant than respiratory viruses in predicting bronchiolitis severity Multiple simultaneous viral infections in infants with acute respiratory tract infections in Spain Dual infection of infants by human metapneumovirus and human respiratory syncytial virus is strongly associated with severe bronchiolitis Identification of a novel coronavirus in patients with severe acute respiratory syndrome A novel coronavirus associated with severe acute respiratory syndrome SARS virus: the beginning of the unraveling of a new coronavirus Coronavirus as a possible cause of severe acute respiratory syndrome Human Infection with a Novel Avian-Origin Influenza A (H7N9) Virus infection control, outbreak management Rapid testing for respiratory syncytial virus in a paediatric emergency department: benefits for infection control and bed management Co-infections in children hospitalised for bronchiolitis: role of roomsharing Empiric antibiotics are justified for infants with respiratory syncytial virus lower respiratory tract infection presenting with respiratory failure: a prospective study and evidence review Viral load drives disease in humans experimentally infected with respiratory syncytial virus Disease severity and viral load are correlated in infants with primary respiratory syncytial virus infection in the community Equal virulence of rhinovirus and respiratory syncytial virus in infants hospitalized for lower respiratory tract infection Respiratory syncytial virus infections in hospitalized infants: association between viral load, virus subgroup, and disease severity Correlation of viral load of respiratory pathogens and co-infections with disease severity in children hospitalized for lower respiratory tract infection Prospective study of human metapneumovirus infection: diagnosis, typing and virus quantification in nasopharyngeal secretions from pediatric patients Quantitation of respiratory viruses in relation to clinical course in children with acute respiratory tract infections Illness severity, viral shedding, and antibody responses in infants hospitalized with bronchiolitis caused by respiratory syncytial virus We thank P. Goswami, MD for critically reviewing the manuscript in the English language.


id: cord-330819-vfagxsdz
author: Althouse, Benjamin M
date: 2018-08-14
extension: .txt
mime: text/plain
words: 4665
sentence: 148
flesch: 32
cache: cache/cord-330819-vfagxsdz.txt
txt: txt/cord-330819-vfagxsdz.txt
title:
  Seasonality of respiratory viruses causing hospitalizations for acute respiratory infections in children in Nha Trang, Vietnam

summary:
  Seminars in respiratory and critical care medicine Wavelet analysis of ecological time series Epidemiology of respiratory syncytial virus infection among paediatric patients in hong kong: seasonality and disease impact Seasonal variation in respiratory syncytial virus chest infection in the tropics Climate cycles and forecasts of cutaneous leishmaniasis, a nonstationary vector-borne disease Seasonal trends of viral respiratory tract infections in the tropics Modified recommendations for use of palivizumab for prevention of respiratory syncytial virus infections Global seasonality of rotavirus infections Viral etiologies of acute respiratory infections among hospitalized vietnamese children in ho chi minh city Seasonal patterns of invasive pneumococcal disease Dynamical resonance can account for seasonality of influenza epidemics Measles in england and wales-i: an analysis of factors underlying seasonal patterns Early indication for a reduced burden of radiologically confirmed pneumonia in children following the introduction of routine vaccination against haemophilus influenzae type b in nha trang, vietnam Seasonal trends of human parainfluenza viral infections: United states Application of the cross wavelet transform and wavelet coherence to geophysical time series Respiratory syncytial virus and parainfluenza virus Viral etiology and epidemiology of acute respiratory infections in children in nairobi, kenya Complex dynamics of synergistic coinfections on realistically clustered networks Pathogen mutation modeled by competition between site and bond percolation Subgrouping of respiratory syncytial virus strains from australia and papua new guinea by biological and antigenic characteristics Epidemiology of respiratory syncytial virus infection among paediatric inpatients in northern taiwan Epidemiology and seasonality of respiratory viral infections in hospitalized children in kuala lumpur, malaysia: a retrospective study of 27 years Considerations of strategies to provide influenza vaccine year round Extending the cure: policy responses to the growing threat of antibiotic resistance Antibiotic resistance-the need for global solutions Access to effective antimicrobials: a worldwide challenge Circulation of influenza b lineages in northern viet nam Incubation periods of acute respiratory viral infections: a systematic review A simultaneous outbreak of respiratory syncytial virus and parainfluenza virus type 3 in a newborn nursery Impact of birth rate, seasonality and transmission rate on minimum levels of coverage needed for rubella vaccination Aerosol stability of three acute respiratory disease viruses Global summary of the day (GSOD) global summary of the day (GSOD Epidemiology of influenza in hanoi, vietnam Climatic, temporal, and geographic characteristics of respiratory syncytial virus disease in a tropical island population Environmental factors affecting the transmission of respiratory viruses Respiratory syncytial virus infection and prevalence of subgroups a and b in hawaii Influenza seasonality and vaccination timing in tropical and subtropical areas of southern and south-eastern asia Epidemiology and seasonality of respiratory tract virus infections in the tropics Viral etiology of acute respiratory infections among children in porto alegre, rs, brazil Timing of antimicrobial use influences the evolution of antimicrobial resistance during disease epidemics Correlations between climate factors and incidence-a contributor to rsv seasonality Seasonality of absolute humidity explains seasonality of influenza-like illness in vietnam Global antibiotic consumption 2000 to 2010: an analysis of national pharmaceutical sales data Antibiotic use and resistance in emerging economies: a situation analysis for viet nam Global burden of childhood pneumonia and diarrhoea Pneumonia: the leading killer of children The clinical spectrum of respiratory syncytial virus disease in the gambia Viral pathogens associated with acute respiratory infections in central vietnamese children Population based cohort study for pediatric infectious diseases research in vietnam key: cord-330819-vfagxsdz authors: Althouse, Benjamin M; Flasche, Stefan; Minh, Le Nhat; Thiem, Vu Dinh; Hashizume, Masahiro; Ariyoshi, Koya; Anh, Dang Duc; Rodgers, Gail L.; Klugman, Keith P.; Hu, Hao; Yoshida, Lay-Myint title: Seasonality of respiratory viruses causing hospitalizations for acute respiratory infections in children in Nha Trang, Vietnam date: 2018-08-14 journal: Int J Infect Dis DOI: 10.1016/j.ijid.2018.08.001 sha: doc_id: 330819 cord_uid: vfagxsdz BACKGROUND: Acute respiratory infections (ARIs) are the most common causes of death in children under 5 years of age.


id: cord-305473-w30hsr4m
author: Jiang, Lili
date: 2017-02-20
extension: .txt
mime: text/plain
words: 4976
sentence: 162
flesch: 35
cache: cache/cord-305473-w30hsr4m.txt
txt: txt/cord-305473-w30hsr4m.txt
title:
  Detection of viral respiratory pathogens in mild and severe acute respiratory infections in Singapore

summary:
  Decision analysis of empirical antiviral treatment of influenza virus infection versus treatment based on rapid test results Summer influenza outbreak in a home for the elderly: application of preventive measures Oseltamivir Ring Prophylaxis for Containment of 2009 H1N1 Influenza Outbreaks Influenza in the acute hospital setting Better Tests, Better Care: Improved Diagnostics for Infectious Diseases Performance of case definitions for influenza surveillance Clinical symptoms cannot predict influenza infection during the 2013 influenza season in Bavaria Molecular diagnosis of respiratory virus infections Advances in diagnosis of respiratory virus infections Influenza and other respiratory virus infections in outpatients with medically attended acute respiratory infection during the 2011-12 influenza season Comparison of multiplex PCR assays and conventional techniques for the diagnostic of respiratory virus infections in children admitted to hospital with an acute respiratory illness Performance of diagnostic tests to detect respiratory viruses in older adults Pathogen chip for respiratory tract infections Detection of influenza virus infection using two PCR methods Viral load dynamics in adult patients with A(H1N1)pdm09 influenza Association of the CT values of real-time PCR of viral upper respiratory tract infection with clinical severity, Kenya Correlation of pandemic (H1N1) 2009 viral load with disease severity and prolonged viral shedding in children Virus shedding after human rhinovirus infection in children, adults and patients with hypogammaglobulinaemia Comparison of severely ill patients with influenza A(H1N1)pdm09 infection during the pandemic and post-pandemic periods in Singapore Use of healthcare worker sickness absenteeism surveillance as a potential early warning system for influenza epidemics in acute care hospitals Seasonal trends of viral respiratory tract infections in the tropics Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes Evaluation of PCR testing of ethanol-fixed nasal swab specimens as an augmented surveillance strategy for influenza virus and adenovirus identification Detection by PCR declined with days post-onset for influenza virus; decrease was faster for community-ARI than for inpatient-ARI.


id: cord-320808-taj5swwc
author: Lu, Guilan
date: 2020-07-23
extension: .txt
mime: text/plain
words: 4935
sentence: 223
flesch: 49
cache: cache/cord-320808-taj5swwc.txt
txt: txt/cord-320808-taj5swwc.txt
title:
  An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55

summary:
  Abbreviations PCR: Polymerase chain reaction; ARI: Acute respiratory infection; HAdV: Human adenovirus; ITR: Inverted terminal repeat; CDC: Center for disease prevention and control; CAP: Community-acquired pneumonia; UTR: Untranslated region Adenovirus: epidemiology, global spread of novel serotypes, and advances in treatment and prevention New adenovirus species found in a patient presenting with gastroenteritis An outbreak of epidemic keratoconjunctivitis caused by a new intermediate adenovirus 22/H8 identified by molecular typing Epidemiology of severe pediatric adenovirus lower respiratory tract infections in Manitoba, Canada Community-acquired pneumonia requiring hospitalization among U.S. adults Isolation of a cytopathogenic agent from human adenoids undergoing spontaneous degeneration in tissue culture Human adenovirus: viral pathogen with increasing importance Emergence and re-emergence of respiratory adenoviruses in the United States Computational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogen Computational analysis of two species C human adenoviruses provides evidence of a novel virus Novel human adenovirus strain Genetic content and evolution of adenoviruses The adenovirus genome contributes to the structural stability of the virion Adenovirus: an overview for pediatric infectious diseases specialists Outbreak of human adenovirus type 3 infection in a pediatric long-term care facility--Illinois Detection of three human adenovirus species in adults with acute respiratory infection in China Retrospective study of adenovirus in autopsied pulmonary tissue of pediatric fatal pneumonia in South China Molecular identification of adenovirus causing respiratory tract infection in pediatric patients at the University of Malaya Medical Center Lower respiratory tract infections due to adenovirus in hospitalized Korean children: epidemiology, clinical features, and prognosis Etiology and clinical characterization of respiratory virus infections in adult patients attending an emergency department in Beijing Epidemical features of HAdV-3 and HAdV-7 in pediatric pneumonia in Chongqing Two adenovirus serotype 3 outbreaks associated with febrile respiratory disease and pharyngoconjunctival fever in children under 15 years of age in Hangzhou, China, during 2011 Adenovirus serotype 7 associated with a severe lower respiratory tract disease outbreak in infants in Shaanxi Province Epidemiology and transmission characteristics of human adenovirus type 7 caused acute respiratory disease outbreak in military trainees in East China Outbreak of acute respiratory disease in China caused by B2 species of adenovirus type 11 Outbreak of adenovirus type 55 infection in Israel An outbreak of acute respiratory disease in China caused by human adenovirus type B55 in a physical training facility A cluster of adenovirus type B55 infection in a neurosurgical inpatient department of a general hospital in Guangdong, China. It is possible that HAdV outbreaks differ in their seasonality based on relative humidity and temperature.


id: cord-252012-hdjbxah8
author: McErlean, Peter
date: 2010-11-01
extension: .txt
mime: text/plain
words: 5502
sentence: 182
flesch: 32
cache: cache/cord-252012-hdjbxah8.txt
txt: txt/cord-252012-hdjbxah8.txt
title:
  Viral diversity in asthma: Immunology and Allergy Clinics of North America: Asthma and Infectious Disease

summary:
  252012 cord_uid: hdjbxah8 Asthma exacerbations are precipitated primarily by respiratory virus infection and frequently require immediate medical intervention. Nevertheless, the disparity in viral detection between the asthmatic and control groups may imply some mechanism of either persistence in asthmatics or an association with the long-term compliance of glucocorticoid therapy and inhibition of symptoms during respiratory virus infection.


id: cord-288487-hs3wfffs
author: Lambert, Stephen B
date: 2008-01-24
extension: .txt
mime: text/plain
words: 5666
sentence: 200
flesch: 39
cache: cache/cord-288487-hs3wfffs.txt
txt: txt/cord-288487-hs3wfffs.txt
title:
  The cost of community-managed viral respiratory illnesses in a cohort of healthy preschool-aged children

summary:
  We calculated mean costs (total and by categories) with 95% confidence intervals (95% CI) and median costs with interquartile ranges for ARIs in study children. Influenza illnesses had a mean cost of $904, compared with RSV, $304, the next most expensive single-virus illness, although confidence intervals overlapped.


id: cord-319845-oob2ktnz
author: Proença-Modena, José Luiz
date: 2011-06-20
extension: .txt
mime: text/plain
words: 5862
sentence: 200
flesch: 43
cache: cache/cord-319845-oob2ktnz.txt
txt: txt/cord-319845-oob2ktnz.txt
title:
  Detection of Human Bocavirus mRNA in Respiratory Secretions Correlates with High Viral Load and Concurrent Diarrhea

summary:
  The most frequent clinical diagnoses associated with respiratory HBoV are general upper respiratory tract infections (URTI), bronchiolitis, pneumonia, bronchitis and exacerbation of asthma [2] . A comparison of clinical features between HBoV patients with and without shedding of VP1 mRNA revealed an association of active viral replication with diarrhea (OR = 6.00; 95% CI = 1.15-34.14; p = 0.04) and a clinical diagnosis of URTI (OR = 19.33; 95% CI = 1.82-294.96; p = 0.01).


id: cord-262773-mfta0emi
author: Jolliffe, D.
date: 2020-07-17
extension: .txt
mime: text/plain
words: 5957
sentence: 227
flesch: 40
cache: cache/cord-262773-mfta0emi.txt
txt: txt/cord-262773-mfta0emi.txt
title:
  Vitamin D supplementation to prevent acute respiratory infections: systematic review and meta-analysis of aggregate data from randomised controlled trials

summary:
  Vitamin D and SARS-CoV-2 virus/COVID-19 disease Modulation of the Immune Response to Respiratory Viruses by Vitamin D Vitamin D in the prevention of acute respiratory infection: systematic review of clinical studies Acute Respiratory Tract Infection and 25-Hydroxyvitamin D Concentration: A Systematic Review and Meta-Analysis A randomized controlled trial of vitamin D3 supplementation for the prevention of symptomatic upper respiratory tract infections Randomized trial of vitamin D supplementation to prevent seasonal influenza A in schoolchildren Effects of vitamin D supplementation to children diagnosed with pneumonia in Kabul: a randomised controlled trial Vitamin D supplementation for the prevention of acute respiratory tract infection: a randomized, double-blinded trial among young Finnish men Vitamin D supplementation in children may prevent asthma exacerbation triggered by acute respiratory infection Effect of weekly vitamin D supplements on mortality, morbidity, and growth of low birthweight term infants in India up to age 6 months: randomised controlled trial High doses of vitamin D to reduce exacerbations in chronic obstructive pulmonary disease: a randomized trial Effect on the incidence of pneumonia of vitamin D supplementation by quarterly bolus dose to infants in Kabul: a randomised controlled superiority trial Randomized trial of vitamin D supplementation and risk of acute respiratory infection in Mongolia Effect of vitamin D3 supplementation on upper respiratory tract infections in healthy adults: the VIDARIS randomized controlled trial Vitamin D3 supplementation in patients with frequent respiratory tract infections: a randomised and double-blind intervention study Vitamin D supplementation reduces the risk of acute otitis media in otitis-prone children Vitamin D3 Supplementation and Upper Respiratory Tract Infections in a Randomized, Controlled Trial Effect of vitamin D supplementation on antibiotic use: a randomized controlled trial Vitamin D3 and gargling for the prevention of upper respiratory tract infections: a randomized controlled trial Effects of vitamin D supplements on influenza A illness during the 2009 H1N1 pandemic: a randomized controlled trial Reduced primary care respiratory infection visits following pregnancy and infancy vitamin D supplementation: a randomised controlled trial Vitamin D3 supplementation in patients with chronic obstructive pulmonary disease (ViDiCO): a multicentre, double-blind, randomised controlled trial. The Lancet Respiratory medicine Double-blind randomised placebocontrolled trial of bolus-dose vitamin D3 supplementation in adults with asthma (ViDiAs) Double-blind randomised controlled trial of vitamin D3 supplementation for the prevention of acute respiratory infection in older adults and their carers (ViDiFlu) Weekly cholecalciferol supplementation results in significant reductions in infection risk among the vitamin D deficient: results from the CIPRIS pilot RCT Vitamin D supplementation and upper respiratory tract infections in adolescent swimmers: a randomized controlled trial Vitamin D Supplementation and the Risk of Colds in Patients with Asthma Improved Control of Childhood Asthma with Low-Dose, Short-Term Vitamin D Supplementation: A Randomized, Double-Blind, Placebo-Controlled Trial High-Dose Monthly Vitamin D for Prevention of Acute Respiratory Infection in Older Long-Term Care Residents: A Randomized Clinical Trial Vitamin D supplementation to prevent acute respiratory tract infections: systematic review and meta-analysis of individual participant data Vitamin D Supplementation for Treatment and Prevention of Pneumonia in Under-five Children: A Randomized Double-blind Placebo Controlled Trial Effect of High-Dose vs Standard-Dose Wintertime Vitamin D Supplementation on Viral Upper Respiratory Tract Infections in Young Healthy Children Randomized Trial of Vitamin D Supplementation to Prevent Seasonal Influenza and Upper Respiratory Infection in Patients With Inflammatory Bowel Disease Effect of Vitamin D Supplementation on Recurrent Wheezing in Black Infants Who Were Born Preterm: The D-Wheeze Randomized Clinical Trial Randomized phase 2 trial of monthly vitamin D to prevent respiratory complications in children with sickle cell disease Effect of Vitamin D supplementation to reduce respiratory infections in children and adolescents in Vietnam: A randomized controlled trial.


id: cord-303845-y6ws3u6x
author: DeLisle, Sylvain
date: 2010-10-14
extension: .txt
mime: text/plain
words: 5616
sentence: 184
flesch: 36
cache: cache/cord-303845-y6ws3u6x.txt
txt: txt/cord-303845-y6ws3u6x.txt
title:
  Combining Free Text and Structured Electronic Medical Record Entries to Detect Acute Respiratory Infections

summary:
  A manual review of EMR entries constituted the reference standard for ARI case detection. Structured EMR parameters and free-text analyses can be combined into algorithms that can detect ARI cases with new levels of sensitivity or precision.


id: cord-102515-ch6prsf3
author: Moran, Elizabeth
date: 2020-04-26
extension: .txt
mime: text/plain
words: 6509
sentence: 235
flesch: 35
cache: cache/cord-102515-ch6prsf3.txt
txt: txt/cord-102515-ch6prsf3.txt
title:
  Inequality in acute respiratory infection outcomes in the United States: A review of the literature and its implications for public health policy and practice.

summary:
  Severity: Hospitalization was the most frequently studied dimension of severity used to characterize influenza disparities, followed by overall healthcare utilization 21, 22 . The lack of studies dedicated to identifying and ameliorating ARI disparities guarantees that the analyses reviewed here provide a decidedly incomplete picture of the drivers of disparities in ARIrelated outcomes.


id: cord-281051-i229xv0o
author: Bishop-Williams, Katherine E.
date: 2017-01-26
extension: .txt
mime: text/plain
words: 6406
sentence: 272
flesch: 38
cache: cache/cord-281051-i229xv0o.txt
txt: txt/cord-281051-i229xv0o.txt
title:
  A protocol for a systematic literature review: comparing the impact of seasonal and meteorological parameters on acute respiratory infections in Indigenous and non-Indigenous peoples

summary:
  Globally, Indigenous peoples may experience a different burden of ARI compared to non-Indigenous peoples. The results can be presented in one of two eligible ways: (i) two models representing the Indigenous and non-Indigenous strata separately with the same seasonal or meteorological parameter in both models, producing two measures of association for which the ratio of odds ratios (ROR) can be calculated (i.e., ARI-exposure model for Indigenous peoples and ARI-exposure model for non-Indigenous peoples); or (ii) a model for an ARI outcome that includes indigeneity and seasonal or meteorological parameter(s) as independent variables from which further calculations can be made (Fig. 1) .


id: cord-268977-hcg2rrhl
author: Feikin, Daniel R.
date: 2012-08-24
extension: .txt
mime: text/plain
words: 6449
sentence: 249
flesch: 43
cache: cache/cord-268977-hcg2rrhl.txt
txt: txt/cord-268977-hcg2rrhl.txt
title:
  Etiology and Incidence of Viral and Bacterial Acute Respiratory Illness among Older Children and Adults in Rural Western Kenya, 2007–2010

summary:
  The percentage of malaria blood smears positive among ARI patients ranged from (13) 1041 (10) 341 (8) 3406 (11) -1194 (62) 2212 (8) 489 (14) 802 (7) CFR a for ARI cases (5) 15 (4) 73 (2) -69 For ARI patients, blood, nasopharyngeal and oropharyngeal specimens using polyester-tipped swabs, and urine were collected.


id: cord-103657-php6aj1r
author: Koller, D.
date: 2020-08-07
extension: .txt
mime: text/plain
words: 6991
sentence: 341
flesch: 53
cache: cache/cord-103657-php6aj1r.txt
txt: txt/cord-103657-php6aj1r.txt
title:
  Safety and cardiovascular effects of multiple-dose administration of aripiprazole and olanzapine in a randomised clinical trial

summary:
  Additionally, it has antagonistic activity at dopamine D3 and D4, 5-HT3 and 5-HT6, histamine H1, α1-adrenergic and muscarinic M1-5 receptors (Bhana et al., 2001; Bymaster et al., 1996) . The inclusion and exclusion criteria were reported in our previous publication (Koller, Saiz-Rodríguez, et al., 2020) .


id: cord-283946-ts2lyy4p
author: Pedersen, N.C
date: 2000-05-11
extension: .txt
mime: text/plain
words: 7678
sentence: 335
flesch: 51
cache: cache/cord-283946-ts2lyy4p.txt
txt: txt/cord-283946-ts2lyy4p.txt
title:
  An isolated epizootic of hemorrhagic-like fever in cats caused by a novel and highly virulent strain of feline calicivirus

summary:
  Transient mild conjunctivitis and rhinitis, has also been associated with acute FCV infection, but unlike pathogens such as feline herpesvirus, upper respiratory involvement is not the major feature of FCV infection. FCV infection and disease occurs in acute and chronic forms (reviewed by Studdert, 1978; Reubel et al., 1992) .


id: cord-016499-5iqpl23p
author: Mackay, Ian M.
title: Rhinoviruses
date: 2014-02-27
extension: .txt
mime: text/plain
words: 23417
sentence: 737
flesch: 34
cache: cache/cord-016499-5iqpl23p.txt
txt: txt/cord-016499-5iqpl23p.txt
summary:
  ARIs linked to HRV infections are associated with excessive and perhaps inappropriate antibiotic prescribing and with significant direct and indirect healthcare expenditure. ARIs linked to HRV infections are associated with excessive and perhaps inappropriate antibiotic prescribing [ 4 ] and with signifi cant direct and indirect healthcare expenditure [ 5 , 6 ] .


