# bib

id: cord-256943-71tnv4lp
author: Santillana, Mauricio
title: Using Clinicians’ Search Query Data to Monitor Influenza Epidemics
date: 2014-08-12
extension: .txt
mime: text/plain
words: 2130
sentence: 84
flesch: 41
cache: cache/cord-256943-71tnv4lp.txt
txt: txt/cord-256943-71tnv4lp.txt
summary:
  Other examples include the use of search query data from Yahoo! We also discuss the potential usefulness and limitations of digital data sources for infectious disease surveillance based on search query data [5, 7, 8, [24] [25] [26]


id: cord-348061-ssjl2w7l
author: Chamberlain, Samuel D
date: 2020-04-10
extension: .txt
mime: text/plain
words: 2747
sentence: 113
flesch: 44
cache: cache/cord-348061-ssjl2w7l.txt
txt: txt/cord-348061-ssjl2w7l.txt
title:
  Real-time detection of COVID-19 epicenters within the United States using a network of smart thermometers

summary:
  To calculate these forecast error rates, we compare CMU forecasts to CDC ILI, while comparing anomaly detection forecasts to thermometer-based ILI, given that these models are trained on different data sources. Similarly, following school closures in Miami-Dade County, real-time ILI values fell below anomalous levels by late March (Fig. S2) , though accounting for reduced influenza transmission leads to more anomaly detections (Fig. 2C ).


id: cord-354143-p2ofapbd
author: Hellferscee, Orienka
date: 2017-07-06
extension: .txt
mime: text/plain
words: 2944
sentence: 110
flesch: 39
cache: cache/cord-354143-p2ofapbd.txt
txt: txt/cord-354143-p2ofapbd.txt
title:
  Enterovirus genotypes among patients with severe acute respiratory illness, influenza‐like illness, and asymptomatic individuals in South Africa, 2012‐2014

summary:
  We observed a high diversity of circulating EV genotypes (a total of 33 genotypes) from EV species A-D with high circulation rates for EV-B and EV-A compared to EV-C and EV-D. From our systematic surveillance across all age groups, the majority of patients testing positive for EV were <5 years of age. We identified high diversity among EVs circulating in hospitalized South African patients, 25 however it is unknown whether different EV genotypes are associated with mild or severe respiratory illness in South Africa.


id: cord-338674-tnnd1s57
author: Yin, J Kevin
title: Pilot study of influenza vaccine effectiveness in urban Australian children attending childcare
date: 2011-06-10
extension: .txt
mime: text/plain
words: 3043
sentence: 120
flesch: 44
cache: cache/cord-338674-tnnd1s57.txt
txt: txt/cord-338674-tnnd1s57.txt
summary:
  Sixty‐three children received influenza vaccine and 88 participated as controls. 3 Evidence for the effectiveness of influenza vaccine in children aged less than 24 months is limited and high quality, appropriately powered, randomised controlled trials are needed.


id: cord-325794-lir8ht2i
author: Kinar, Y.
title: Predicting individual risk for COVID19 complications using EMR data
date: 2020-06-05
extension: .txt
mime: text/plain
words: 3224
sentence: 152
flesch: 49
cache: cache/cord-325794-lir8ht2i.txt
txt: txt/cord-325794-lir8ht2i.txt
summary:
  The other was directly derived from initial COVID-19 complications data. The other was directly derived from initial COVID-19 complications data.


id: cord-252884-miptf6od
author: Jeffery, Diana D.
title: Impact of the 2009 Influenza (H1N1) Pandemic on the United States Military Health Care System
date: 2013-06-17
extension: .txt
mime: text/plain
words: 2936
sentence: 108
flesch: 36
cache: cache/cord-252884-miptf6od.txt
txt: txt/cord-252884-miptf6od.txt
summary:
  Finally, while the cost of care provided in civilian settings is directly calculated from government payments/costs at a claim level, military care costs are reported in aggregate (by clinic) and then fitted and allocated to the detail visit level; hence, military care costs are inexact comparisons to civilian costs. Highest health care utilization costs were found in children less than age 5.


id: cord-345315-y3bdjnhg
author: Dai, Yaoyao
date: 2020-10-01
extension: .txt
mime: text/plain
words: 3331
sentence: 132
flesch: 47
cache: cache/cord-345315-y3bdjnhg.txt
txt: txt/cord-345315-y3bdjnhg.txt
title:
  Identifying the outbreak signal of COVID-19 before the response of the traditional disease monitoring system

summary:
  [18] Timeliness and precision in the detection of infectious disease outbreaks from the information published on the web are crucial for prevention of their spread. Insights from different clinical settings Identification of terms for detecting early signals of emerging infectious disease outbreaks on the web. Computers and Electronics in Agriculture Use of Google Trends to investigate loss-of-smell-related searches during the COVID-19 outbreak Retrospective analysis of the possibility of predicting the COVID-19 outbreak from Internet searches and social media data, China, 2020.


id: cord-002451-r7a0orh7
author: Chu, Yanhui
date: 2017-03-06
extension: .txt
mime: text/plain
words: 3590
sentence: 140
flesch: 49
cache: cache/cord-002451-r7a0orh7.txt
txt: txt/cord-002451-r7a0orh7.txt
title:
  Effects of school breaks on influenza-like illness incidence in a temperate Chinese region: an ecological study from 2008 to 2015

summary:
  9 10 Significant associations between winter school breaks and temporary reductions of influenza-like illness (ILI) incidence have been found in Chile 10 and Argentina, 9 as children were less likely to be gathered during school breaks thus reducing the chance of influenza transmission. Serfling-based Poisson regression model with adjustment for unmeasured confounders was built to further assess the effect of winter school breaks.


id: cord-002753-lvlbwcl0
author: Rogers, Kimberly B.
date: 2017-10-06
extension: .txt
mime: text/plain
words: 3691
sentence: 140
flesch: 36
cache: cache/cord-002753-lvlbwcl0.txt
txt: txt/cord-002753-lvlbwcl0.txt
title:
  Laboratory-based respiratory virus surveillance pilot project on select cruise ships in Alaska, 2013–15()

summary:
  The value of cruise ship influenza surveillance is highlighted by outbreaks of seasonal and pandemic influenza among passengers and crews, 2,7-9 and the potential for introduction of antigenically drifted seasonal influenza virus strains. Influenza outbreaks among cruise ship passengers and crew members are relatively common, and may be prolonged and challenging to control as new, susceptible passengers embark at frequent intervals.


id: cord-309860-otx45b8x
author: Conway, Nicholas T.
title: Clinical Predictors of Influenza in Young Children: The Limitations of “Influenza-Like Illness”
date: 2012-09-03
extension: .txt
mime: text/plain
words: 3742
sentence: 153
flesch: 40
cache: cache/cord-309860-otx45b8x.txt
txt: txt/cord-309860-otx45b8x.txt
summary:
  Influenza disease surveillance usually includes a combination of community-and hospital-based syndromic surveillance and routinely collected data concerning morbidity and mortality, with only some including laboratory confirmation of influenza infection. Influenza-like illness is a poor predictor of actual influenza infection in adults, despite attempts to improve the accuracy of the definition [8] , but there is limited data on the reliability of ILI in predicting influenza infection in children


id: cord-341260-vxsbv8t9
author: Loubet, P.
date: 2017-04-30
extension: .txt
mime: text/plain
words: 3602
sentence: 146
flesch: 41
cache: cache/cord-341260-vxsbv8t9.txt
txt: txt/cord-341260-vxsbv8t9.txt
title:
  Clinical characteristics and outcome of respiratory syncytial virus infection among adults hospitalized with influenza-like illness in France

summary:
  Respiratory syncytial virus infection in elderly and high-risk adults Prevalence and clinical characteristics of human respiratory syncytial virus in Chinese adults with acute respiratory tract infection Medically attended respiratory syncytial virus infections in adults aged 50 years: clinical characteristics and outcomes Seasonal incidence of medically attended respiratory syncytial virus infection in a community cohort of adults 50 years old Morbidity and mortality among patients with respiratory syncytial virus infection: a 2-year retrospective review Community respiratory virus infections following lung transplantation Respiratory syncytial virus and other respiratory viral infections in older adults with moderate to severe influenza-like illness Risk factors for respiratory syncytial virus illness among patients with chronic obstructive pulmonary disease Evaluation of case definitions for estimation of respiratory syncytial virus associated hospitalizations among children in a rural community of northern India Pneumonia was more likely to occur in patients with RSV than in patients with RSV-negative ILI (44% (23/53) versus 26% (362/1393), p 0.006) or with influenza virus infection (44% versus 28% (157/560), p 0.02).


id: cord-288372-48wao8a0
author: Dia, Ndongo
date: 2014-04-08
extension: .txt
mime: text/plain
words: 3874
sentence: 165
flesch: 50
cache: cache/cord-288372-48wao8a0.txt
txt: txt/cord-288372-48wao8a0.txt
title:
  Respiratory viruses associated with patients older than 50 years presenting with ILI in Senegal, 2009 to 2011

summary:
  The impact of influenza on the health and health care utilisation of elderly people Influenza-related hospitalisation and death in Australians aged 50 years and older New respiratory viruses and the elderly Mortality associated with influenza and respiratory syncytial virus in the United States Surveillance of 16 respiratory viruses in patients with influenza-like illness in Nanjing Current research on influenza and other respiratory viruses: II international symposium Aetiology of influenza-like illness in adults includes parainfluenzavirus type 4 Acute viral infections of upper respiratory tract in elderly people living in the community: comparative, prospective, population based study of disease burden Influenza A/H1N1 2009 pandemic and respiratory virus infections The post-infection outcomes of influenza and acute respiratory infection in patients above 50 years of age in Japan: an observational study Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness Epidemiology of 2009 pandemic influenza a (H1N1) deaths in the United States Outbreaks of 2009 pandemic influenza A (H1N1) among long-term-care facility residents-three states Nationwide surveillance of 18 respiratory viruses in patients with influenza-like illnesses: a pilot feasibility study in the French Sentinel network Rates of hospitalizations for respiratory syncytial virus, human metapneumovirus, and influenza virus in older adults Fields Virology Viral respiratory infections in elderly patients and patients with chronic obstructive pulmonary disease A subregional analysis of epidemiologic and genetic characteristics of influenza A(H1N1)pdm09 in Africa Respiratory viruses in children admitted to hospital intensive care units: evaluating the CLART1 150 viruses were detected: influenza viruses (44.7%) and rhinoviruses (26.7%) were the most prevalent.


id: cord-261282-r1nprlne
author: CHUGHTAI, A. A.
title: The presence of fever in adults with influenza and other viral respiratory infections
date: 2016-10-03
extension: .txt
mime: text/plain
words: 3874
sentence: 186
flesch: 49
cache: cache/cord-261282-r1nprlne.txt
txt: txt/cord-261282-r1nprlne.txt
summary:
  Clinical presentation of influenza in hospitalized patients Fever in the elderly Ischaemic heart disease, influenza and influenza vaccination: a prospective case control study Natural course of fever during influenza virus infection in children Clinical features of the initial cases of 2009 pandemic influenza A (H1N1) virus infection in China Clinical predictors for diagnosing pandemic (H1N1) 2009 and seasonal influenza (H3N2) in fever clinics in Beijing A cluster randomised trial of cloth masks compared to medical masks in healthcare workers A cluster randomized clinical trial comparing fit-tested and non-fit-tested N95 respirators to medical masks to prevent respiratory virus infection in health care workers A randomized clinical trial of three options for N95 respirators and medical masks in health workers Hospital triage system for adult patients using an influenza-like illness scoring system during the 2009 pandemic -Mexico Pandemic Influenza Triage Tools: User Guide Predicting influenza infections during epidemics with use of a clinical case definition Evaluation of clinical case definitions of influenza: detailed investigation of patients during the 1995-1996 epidemic in France Influenzavirus infections in Seattle families, 1975-1979. Influenza infection and disease Differing virulence of H1N1 and H3N2 influenza strains Influenza A and B virus infections in children Differences in clinical features between influenza A H1N1, A H3N2, and B in adult patients Seasonal influenza in adults and children -diagnosis, treatment, chemoprophylaxis, and institutional outbreak management: clinical practice guidelines of the Infectious Diseases Society of America Signs and symptoms predicting influenza in children: a matched case-control analysis of prospectively collected clinical data Clinical signs and symptoms predicting influenza infection Viral shedding and clinical illness in naturally acquired influenza virus infections Is influenza an influenza-like illness?


id: cord-264140-5cxzc3z8
author: Tam, Clarence C.
date: 2018-09-04
extension: .txt
mime: text/plain
words: 4013
sentence: 163
flesch: 40
cache: cache/cord-264140-5cxzc3z8.txt
txt: txt/cord-264140-5cxzc3z8.txt
title:
  Epidemiology and Transmission of Respiratory Infections in Thai Army Recruits: A Prospective Cohort Study

summary:
  In the serology subset, the rate of influenza infection was 3.4 per 100 person-months; 58% of influenza infections resulted in clinical disease. Despite this, data from tropical settings, in which the epidemiology of influenza and other respiratory infections differs substantially from temperate settings, are limited.


id: cord-321704-jozrgcq3
author: Tan, Xin Quan
date: 2014-04-15
extension: .txt
mime: text/plain
words: 3863
sentence: 174
flesch: 44
cache: cache/cord-321704-jozrgcq3.txt
txt: txt/cord-321704-jozrgcq3.txt
title:
  Respiratory viral pathogens among Singapore military servicemen 2009 – 2012: epidemiology and clinical characteristics

summary:
  respiratory viral panels for the diagnosis of respiratory viral infections in adults R: A language and environment for statistical computing Prevalence and seasonality of influenza-like illness in children Outbreak of pandemic influenza A (H1N1-2009) in Singapore Effectiveness of pandemic H1N1-2009 vaccination in reducing laboratory confirmed influenza infections among military recruits in tropical Singapore Broad spectrum respiratory pathogen analysis of throat swabs from military recruits reveals interference between rhinoviruses and adenoviruses Viral etiology of influenza-like illnesses in Evaluation of an influenza-like illness case definition in the diagnosis of influenza among patients with acute febrile illness in Cambodia Seasonal variations of 15 respiratory agents illustrated by the application of a multiplex polymerase chain reaction assay Rapid multiplex nested PCR for detection of respiratory viruses Influenza-like illness sentinel surveillance in Peru Nationwide surveillance of 18 respiratory viruses in patients with influenza-like illnesses: a pilot feasibility study in the French Sentinel Network Aetiology of influenza-like illness in adults includes parainfluenzavirus type 4 Respiratory viruses and influenza-like illness: a survey in the area of Rome Dual respiratory virus infections Respiratory viral infections during the 2009-2010 winter season in Central England, UK: incidence and patterns of multiple virus co-infections Relationship between humidity and influenza A viability in droplets and implications for influenza's seasonality Fever in respiratory virus infections Clinical signs and symptoms predicting influenza infection Differing symptom patterns in early pandemic vs seasonal influenza infections Predicting influenza infections during epidemics with use of a clinical case definition Understanding the symptoms of the common cold and influenza Influenza-like illness criteria were poorly related to laboratory-confirmed influenza in a sentinel surveillance study Clinical and financial benefits of rapid detection of respiratory viruses: an outcomes study Submit your next manuscript to BioMed Central and take full advantage of: • Convenient online submission • As influenza viruses have accounted for only between 10.1% to 53.0% of all ILI cases [15] [16] [17] , it is important to understand the contribution of other respiratory pathogens to overall morbidity and to determine their epidemiological distribution and clinical presentation.


id: cord-312493-wbhji81g
author: Tay, Ee Laine
title: Exploring a Proposed WHO Method to Determine Thresholds for Seasonal Influenza Surveillance
date: 2013-10-11
extension: .txt
mime: text/plain
words: 4305
sentence: 182
flesch: 45
cache: cache/cord-312493-wbhji81g.txt
txt: txt/cord-312493-wbhji81g.txt
summary:
  Flu Activity & Surveillance: Weekly US Influenza Surveillance Report Weekly Influenza Surveillance Overview In: Control Establishing thresholds for influenza surveillance in Victoria Can syndromic thresholds provide early warning of national influenza outbreaks? Methods for monitoring influenza surveillance data A routine tool for detection and assessment of epidemics of influenza-like syndromes in France A statistical algorithm for the early detection of outbreaks of infectious disease Epidemic features affecting the performance of outbreak detection algorithms Influenza surveillance in Europe: establishing epidemic thresholds by the Moving Epidemic Method Modelling influenza epidemic -can we detect the beginning and predict the intensity and duration? Detection of epidemics in their early stage through infectious disease surveillance Do CuSums have a role in routine communicable disease surveillance? Detecting the start of an influenza outbreak using exponentially weighted moving average charts Overview of Influenza Surveillance in the United States Laboratory-supported influenza surveillance in Victorian sentinel general practices Estimation of influenza vaccine effectiveness from routine surveillance data A medical locum service as a site for sentinel influenza surveillance Influenza-like illness surveillance using a deputising medical service corresponds to surveillance from sentinel general practices Laboratory diagnosis and surveillance of human respiratory viruses by PCR in H1N1 swine origin influenza infection in the United States and Europe in 2009 may be similar to H1N1 seasonal influenza infection in two Australian states in A comparison of data sources for the surveillance of seasonal and pandemic influenza in Victoria Influenza surveillance in Australia: we need to do more than count The use of thresholds to describe levels of influenza activity An Analysis of Variance Test for Normality (Complete Samples) Improving the Estimation of Influenza-Related Mortality Over a Seasonal Baseline Predicting the epidemic sizes of influenza A/H1N1, A/H3N2, and B: a statistical method The significance of increased influenza notifications during spring and summer of 2010-11 in Australia Pandemic influenza H1N1 2009 infection in Victoria, Australia: no evidence for harm or benefit following receipt of seasonal influenza vaccine in 2009 The aim of this study was to explore the feasibility of the WHO method for the calculation of influenza thresholds using a range of existing surveillance and laboratory data sources in one surveillance system.


id: cord-272878-6f0q661e
author: Schnepf, Nathalie
date: 2011-08-17
extension: .txt
mime: text/plain
words: 4178
sentence: 171
flesch: 40
cache: cache/cord-272878-6f0q661e.txt
txt: txt/cord-272878-6f0q661e.txt
title:
  High Burden of Non-Influenza Viruses in Influenza-Like Illness in the Early Weeks of H1N1v Epidemic in France

summary:
  The interferon response circuit: induction and suppression by pathogenic viruses Situation épidémiologique de la bronchiolite Portrait of a year-old pandemic Detection of extensive cross-neutralization between pandemic and seasonal A/ H1N1 Influenza Viruses using a pseudotype neutralization assay Multiplex real-time PCR for detection of respiratory tract infections Frequent detection of viral coinfection in children hospitalized with acute respiratory tract infection using a real-time polymerase chain reaction Detection of multiple respiratory pathogens during primary respiratory infection: nasal swab versus nasopharyngeal aspirate using real-time polymerase chain reaction Prospective evaluation of a novel multiplex real-time PCR assay for detection of fifteen respiratory pathogens-duration of symptoms significantly affects detection rate Improving the clinical diagnosis of influenza-a comparative analysis of new influenza A (H1N1) cases Molecular diagnosis of respiratory viruses Detection of respiratory viruses by molecular methods Comprehensive diagnostics for respiratory virus infections after transplantation or after potential exposure to swine flu A/H1N1: what else is out there? Another possible explanation is better prevention behaviour about respiratory infections as recommended by a national campaign including recommendations for hands washing after sneezing and the use of mask [1] .


id: cord-297609-6g39lu1y
author: Wertheim, Heiman F L
date: 2015-10-13
extension: .txt
mime: text/plain
words: 4307
sentence: 161
flesch: 40
cache: cache/cord-297609-6g39lu1y.txt
txt: txt/cord-297609-6g39lu1y.txt
title:
  Viral and atypical bacterial aetiologies of infection in hospitalised patients admitted with clinical suspicion of influenza in Thailand, Vietnam and Indonesia

summary:
  Influenza and Other Respiratory Viruses Published by Viral etiology of acute lower respiratory tract infections in hospitalized young children in Northern Taiwan Respiratory viral infections detected by multiplex PCR among pediatric patients with lower respiratory tract infections seen at an urban hospital in Delhi from Aetiological role of viral and bacterial infections in acute adult lower respiratory tract infection (LRTI) in primary care Human bocavirus-the first 5 years High frequency of human bocavirus 1 DNA in infants and adults with lower acute respiratory infection Human bocavirus: a novel parvovirus epidemiologically associated with pneumonia requiring hospitalization in Thailand Atypical bacterial pathogen infection in children with acute bronchiolitis in northeast Thailand Acute bronchitis in the community: clinical features, infective factors, changes in pulmonary function and bronchial reactivity to histamine An Asian study on the prevalence of atypical respiratory pathogens in communityacquired pneumonia First report of human psittacosis in Vietnam a clinical virological and epidemiological analysis The investigators were involved in all aspects including protocol design, study execution and oversight and the writing of this publication. The low number of detected influenza viruses demonstrates a low benefit for empirical oseltamivir therapy, unless during an influenza outbreak.


id: cord-336335-spap39b7
author: Silva, Denise R
date: 2013-08-26
extension: .txt
mime: text/plain
words: 4177
sentence: 187
flesch: 41
cache: cache/cord-336335-spap39b7.txt
txt: txt/cord-336335-spap39b7.txt
title:
  Respiratory viral infections and effects of meteorological parameters and air pollution in adults with respiratory symptoms admitted to the emergency room

summary:
  The contribution of influenza to combined acute respiratory infections, hospital admissions, and deaths in winter Excess hospital admissions for pneumonia and influenza in persons > or = 65 years associated with influenza epidemics in three English health districts: 1987-95 Community-acquired pneumonia Prospective epidemiologic survey of patients with community-acquired pneumonia requiring hospitalization in Switzerland Frequency of detection of respiratory viruses in the lower respiratory tract of hospitalized adults Incidência de infecc ßão viral do trato respirat orio em asma aguda atendida em sala de emergência Surveillance of respiratory virus infections in adult hospital admissions using rapid methods Are meteorological parameters associated with acute respiratory tract infections? Increased susceptibility to RSV infection by exposure to inhaled diesel engine emissions Ultrafine carbon black particles enhance respiratory syncitial virus-induced airway reactivity, pulmonary inflammation, and chemokine expression Updated world map of the K€ oppen-Geiger climate classification Influenza activity-United States and worldwide, 2007-08 season Influenza pandêmica (H1N1) 2009 13, 14 Because of the large impact respiratory virus infections have on morbidity and even mortality, it is important to understand whether and how meteorological factors and exposure to air pollutants could influence respiratory virus infections.


id: cord-286837-j2sqs20q
author: Koetsier, Antonie
title: Do Intensive Care Data on Respiratory Infections Reflect Influenza Epidemics?
date: 2013-12-31
extension: .txt
mime: text/plain
words: 4530
sentence: 178
flesch: 45
cache: cache/cord-286837-j2sqs20q.txt
txt: txt/cord-286837-j2sqs20q.txt
summary:
  We explored whether ICU data reflect influenza like illness (ILI) activity in the general population, and whether ICU respiratory infections can predict influenza epidemics. In addition, ICU data of the first three years was used to build three regression models to predict the start and end of influenza epidemics in the years thereafter, one to three weeks ahead.


id: cord-263353-4mnsjbib
author: Maman, Issaka
title: Implementation of Influenza-like illness Sentinel Surveillance in Togo
date: 2014-09-20
extension: .txt
mime: text/plain
words: 4525
sentence: 189
flesch: 49
cache: cache/cord-263353-4mnsjbib.txt
txt: txt/cord-263353-4mnsjbib.txt
summary:
  Table 3 Distribution of influenza viruses confirmed and ILI patients Influenza A was predominant in 2010 with pandemic influenza A (H1N1) pdm 09 in our study; this observation was similar to that of other countries in West Africa Of the 955 samples, 236 (24.7%) tested positive for influenza viruses; with 136 (14.2%) positive for influenza A and 100 (10.5%) positive for influenza B. The highest influenza positive percentage (30%) was observed in 5–14 years old and patients aged 0–4 and >60 years had the lowest percentage (20%).


id: cord-254556-1zthrgy1
author: Taylor, Sylvia
date: 2016-09-22
extension: .txt
mime: text/plain
words: 4554
sentence: 209
flesch: 45
cache: cache/cord-254556-1zthrgy1.txt
txt: txt/cord-254556-1zthrgy1.txt
title:
  Respiratory viruses and influenza-like illness: Epidemiology and outcomes in children aged 6 months to 10 years in a multi-country population sample

summary:
  Epidemiology of viral respiratory infections Viral infections of the lower respiratory tract: old viruses, new viruses, and the role of diagnosis Estimates of world-wide distribution of child deaths from acute respiratory infections Global burden of childhood pneumonia and diarrhoea Comparison of multiplex PCR assays and conventional techniques for the diagnostic of respiratory virus infections in children admitted to hospital with an acute respiratory illness Molecular diagnosis of respiratory virus infections The role of infections and coinfections with newly identified and emerging respiratory viruses in children Relative efficacy of AS03-adjuvanted pandemic H1N1 influenza vaccine in children: results of a controlled, randomized efficacy trial Prevalence and incidence of respiratory syncytial virus and other respiratory viral infections in children 6 months to 10 years of age with influenza-like illness enrolled in a randomized trial Comparison of the Luminex xTAG respiratory viral panel fast for diagnosis of respiratory virus infection The use of confidence or fiducial limits illustrated in the case of the binomial A simple method to calculate the confidence interval of a standardized mortality ratio (SMR) Community epidemiology of human metapneumovirus, human coronavirus NL63, and other respiratory viruses in healthy preschool-aged children using parentcollected specimens Clinical epidemiology of bocavirus, rhinovirus, two polyomaviruses and four coronaviruses in HIV-infected and HIV-uninfected South African children Epidemiology of respiratory viral infections in children enrolled in a study of influenza vaccine effectiveness Incidence and etiology of acute lower respiratory tract infections in hospitalized children younger than 5 years in rural Thailand Severe lower respiratory tract infection in infants and toddlers from a non-affluent population: viral etiology and co-detection as risk factors Viruses associated with acute respiratory infections and influenza-like illness among outpatients from the Influenza Incidence Surveillance Project Picornavirus, the most common respiratory virus causing infection among patients of all ages hospitalized with acute respiratory illness Respiratory viruses within homeless shelters in Marseille, France Human rhinoviruses and enteroviruses in influenza-like illness in Latin America Respiratory viral infections during the 2009e2010 winter season in Central England, UK: incidence and patterns of multiple virus co-infections Concurrent detection of other respiratory viruses in children shedding viable human respiratory syncytial virus Community-acquired pneumonia requiring hospitalization among US children All authors participated in the design, or implementation, or analysis and interpretation of the study results; as well as in the development of this manuscript.


id: cord-318856-f0m3wuyj
author: Hoogeveen, Martijn J.
title: Can pollen explain the seasonality of flu-like illnesses in the Netherlands?
date: 2020-10-22
extension: .txt
mime: text/plain
words: 4703
sentence: 163
flesch: 39
cache: cache/cord-318856-f0m3wuyj.txt
txt: txt/cord-318856-f0m3wuyj.txt
summary:
  We combined changes in flu-like incidence per 100K/Dutch residents (code: ILI) with pollen concentrations and meteorological data. We have not assumed delay effects for meteorological variables or pollen concentrations, so we have not calculated moving averages for other time series.


id: cord-002438-b8t4a57r
author: Cheng, Wei
date: 2017-02-22
extension: .txt
mime: text/plain
words: 4847
sentence: 192
flesch: 48
cache: cache/cord-002438-b8t4a57r.txt
txt: txt/cord-002438-b8t4a57r.txt
title:
  Comparison of Influenza Epidemiological and Virological Characteristics between Outpatients and Inpatients in Zhejiang Province, China, March 2011–June 2015

summary:
  Our study demonstrated that the activities of influenza virus, including its subtypes, had a similar temporal pattern between ILI and SARI cases. Currently, the selection of strains for the annual influenza vaccine are primarily 2 of 12 based on the predominant strain of influenza virus detected in influenza-like illness (ILI)


id: cord-282668-bs634hti
author: Niang, Mbayame Ndiaye
date: 2017-03-22
extension: .txt
mime: text/plain
words: 4627
sentence: 196
flesch: 42
cache: cache/cord-282668-bs634hti.txt
txt: txt/cord-282668-bs634hti.txt
title:
  Respiratory viruses in patients with influenza-like illness in Senegal: Focus on human respiratory adenoviruses

summary:
  Molecular Evolutionary Genetics Analysis version 6.0 Epidemiology of respiratory viral infections in two long-term refugee camps in Kenya Viral etiology and seasonality of influenza-like illness in Gabon Epidemiology of respiratory viral infection using multiplex rt-PCR in Laboratory Surveillance of Influenza-Like Illness in Seven Teaching Hospitals The clinical and etiological characteristics of influenza-like illness (ILI) in outpatients in Temporal changes in respiratory adenovirus serotypes circulating in the greater Toronto area Adenovirus respiratory tract infections in Peru Sentinel surveillance of influenza-like illness in two hospitals in Respiratory viral infections during the 2009-2010 winter season in Central England, UK: incidence and patterns of multiple virus co-infections Viral etiology of severe acute respiratory infections in hospitalized children in Cameroon The role of respiratory viral infections among children hospitalized for community-acquired pneumonia in a developing country Respiratory Virus Detection and Clinical Diagnosis in Children Attending Day Care Surveillance for severe acute respiratory infections in Southern Arizona Epidemiology of human respiratory viruses in children with acute respiratory tract infections in Jinan, China Respiratory viral infection in lower airways of asymptomatic children Viral and Other Infections of the Human Respiratory Tract The epidemiology of adenovirus infections in Greater Manchester, UK 1982-96 Estimates of world-wide distribution of child deaths from acute respiratory infections Viral infections of the lower respiratory tract: old viruses, new viruses, and the role of diagnosis Molecular identification of adenoviruses associated with respiratory infection in Egypt from Adenovirus infection in children with acute lower respiratory tract infections in Beijing, China Feigin RD, Cherry JD.


id: cord-344070-17oac3bg
author: Silverman, Justin D
date: 2020-04-03
extension: .txt
mime: text/plain
words: 5100
sentence: 203
flesch: 52
cache: cache/cord-344070-17oac3bg.txt
txt: txt/cord-344070-17oac3bg.txt
title:
  Using ILI surveillance to estimate state-specific case detection rates and forecast SARS-CoV-2 spread in the United States

summary:
  Many states, including Washington, New York, Oregon, Pennsylvania, Maryland, Colorado, New Jersey, and Louisiana, have had a recent surge in number of non-influenza ILI cases far in excess of seasonal norms. This assumption allows us to calculate the number of non-influenza ILI cases as The resulting time-seriesỹ it are shown in Figure S4 .


id: cord-334424-z7ygy25e
author: McCaw, James M
date: 2012-12-11
extension: .txt
mime: text/plain
words: 4794
sentence: 173
flesch: 37
cache: cache/cord-334424-z7ygy25e.txt
txt: txt/cord-334424-z7ygy25e.txt
title:
  Household transmission of respiratory viruses – assessment of viral, individual and household characteristics in a population study of healthy Australian adults

summary:
  The lack of virological assessment of household secondary cases and the broad nature of the question used to establish the secondary case count in each house also contributes to uncertainty with regards to our assignment of temporally associated ILI to within-household transmission. key: cord-334424-z7ygy25e authors: McCaw, James M; Howard, Peter F; Richmond, Peter C; Nissen, Michael; Sloots, Theo; Lambert, Stephen B; Lai, Michael; Greenberg, Michael; Nolan, Terry; McVernon, Jodie title: Household transmission of respiratory viruses – assessment of viral, individual and household characteristics in a population study of healthy Australian adults date: 2012-12-11 journal: BMC Infect Dis DOI: 10.1186/1471-2334-12-345 sha: doc_id: 334424 cord_uid: z7ygy25e BACKGROUND:


id: cord-305473-w30hsr4m
author: Jiang, Lili
date: 2017-02-20
extension: .txt
mime: text/plain
words: 4976
sentence: 162
flesch: 35
cache: cache/cord-305473-w30hsr4m.txt
txt: txt/cord-305473-w30hsr4m.txt
title:
  Detection of viral respiratory pathogens in mild and severe acute respiratory infections in Singapore

summary:
  Decision analysis of empirical antiviral treatment of influenza virus infection versus treatment based on rapid test results Summer influenza outbreak in a home for the elderly: application of preventive measures Oseltamivir Ring Prophylaxis for Containment of 2009 H1N1 Influenza Outbreaks Influenza in the acute hospital setting Better Tests, Better Care: Improved Diagnostics for Infectious Diseases Performance of case definitions for influenza surveillance Clinical symptoms cannot predict influenza infection during the 2013 influenza season in Bavaria Molecular diagnosis of respiratory virus infections Advances in diagnosis of respiratory virus infections Influenza and other respiratory virus infections in outpatients with medically attended acute respiratory infection during the 2011-12 influenza season Comparison of multiplex PCR assays and conventional techniques for the diagnostic of respiratory virus infections in children admitted to hospital with an acute respiratory illness Performance of diagnostic tests to detect respiratory viruses in older adults Pathogen chip for respiratory tract infections Detection of influenza virus infection using two PCR methods Viral load dynamics in adult patients with A(H1N1)pdm09 influenza Association of the CT values of real-time PCR of viral upper respiratory tract infection with clinical severity, Kenya Correlation of pandemic (H1N1) 2009 viral load with disease severity and prolonged viral shedding in children Virus shedding after human rhinovirus infection in children, adults and patients with hypogammaglobulinaemia Comparison of severely ill patients with influenza A(H1N1)pdm09 infection during the pandemic and post-pandemic periods in Singapore Use of healthcare worker sickness absenteeism surveillance as a potential early warning system for influenza epidemics in acute care hospitals Seasonal trends of viral respiratory tract infections in the tropics Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes Evaluation of PCR testing of ethanol-fixed nasal swab specimens as an augmented surveillance strategy for influenza virus and adenovirus identification Detection by PCR declined with days post-onset for influenza virus; decrease was faster for community-ARI than for inpatient-ARI.


id: cord-028048-0oqv2jom
author: Rguig, Ahmed
title: Establishing seasonal and alert influenza thresholds in Morocco
date: 2020-06-29
extension: .txt
mime: text/plain
words: 5805
sentence: 243
flesch: 40
cache: cache/cord-028048-0oqv2jom.txt
txt: txt/cord-028048-0oqv2jom.txt
summary:
  While several statistical methods are commonly used, there is no gold standard for calculating influenza epidemic thresholds. Can syndromic thresholds provide early warning of national influenza outbreaks? Methods for monitoring influenza surveillance data A routine tool for detection and assessment of epidemics of influenza-like syndromes in France A statistical algorithm for the early detection of outbreaks of infectious disease Do CuSums have a role in routine communicable disease surveillance?


id: cord-275605-mbiojk39
author: Benkouiten, Samir
title: Clinical respiratory infections and pneumonia during the Hajj pilgrimage: A systematic review
date: 2018-12-04
extension: .txt
mime: text/plain
words: 5820
sentence: 237
flesch: 42
cache: cache/cord-275605-mbiojk39.txt
txt: txt/cord-275605-mbiojk39.txt
summary:
  The prevalence of acute respiratory symptoms and role of protective measures among Malaysian hajj pilgrims The association between pre-morbid conditions and respiratory tract manifestations amongst Malaysian Hajj pilgrims The inevitable Hajj cough: surveillance data in French pilgrims High prevalence of common respiratory viruses and no evidence of Middle East respiratory syndrome coronavirus in Hajj pilgrims returning to Ghana Respiratory viruses and bacteria among pilgrims during the Acquisition of Streptococcus pneumoniae carriage in pilgrims during the 2012 Hajj Pilot randomised controlled trial to test effectiveness of facemasks in preventing influenza-like illness transmission among Australian hajj pilgrims in 2011 Lack of MERS coronavirus but prevalence of influenza virus Circulation of respiratory viruses among pilgrims during the 2012 Hajj pilgrimage Lack of nasal carriage of novel corona virus (HCoV-EMC) in French Hajj pilgrims returning from the Hajj 2012, despite a high rate of respiratory symptoms Serological study of Bordetella Pertussis, Mycoplasma Pneumonia and Chlamydia Pneumonia in Iranian hajj pilgrims with prolonged cough illnesses: a follow-up study The prevalence and preventive measures of the respiratory illness among Malaysian pilgrims in 2013 Hajj season Influenza like illness (ILI): prevalence and preventive practices among Indian Haj pilgrims of Karnataka Impact of the Hajj on pneumococcal transmission Mass gathering and globalization of respiratory pathogens during the 2013 Hajj Viral respiratory infections among Hajj pilgrims in 2013 Acute febrile respiratory infection symptoms in Australian Hajjis at risk of exposure to Middle East respiratory syndrome coronavirus Relative risk for influenza like illness in French Hajj pilgrims compared to non-Hajj attending controls during the 2009 influenza pandemic Patterns of diseases and preventive measures among domestic hajjis from Central Patterns of diseases and preventive measures among domestic hajjis from Central, Saudi Arabia Protective practices and respiratory illness among US travelers to the Occurrence of acute respiratory infection, diarrhea and jaundice among Afghan pilgrims Pattern of diseases and preventive measures among domestic Hajjis from Riyadh, 1431 H Protective measures against acute respiratory symptoms in French pilgrims participating in the Hajj of Surveying respiratory infections among Iranian Hajj pilgrims Hajj-associated acute respiratory infection among hajjis from Riyadh Effect of the use of face mask on hajj related acute respiratory infection among Hajjis from Riyadh, a health promotion intervention study The comparison of influenza vaccine efficacy on respiratory diseases among Iranian pilgrims in the 2003 and 2004 seasons The incidence of influenza like illness and determination of the efficacy of Flu vaccine in Iranian pilgrims during Hajj pilgrimage Incidence of hajj-related acute respiratory infection among hajjis from Riyadh, 1423 H The incidence of vaccine preventable influenza-like illness and medication use among Pakistani pilgrims to the Haj in Saudi Arabia Cross-sectional survey and surveillance for influenza viruses and MERS-CoV among Egyptian pilgrims returning from Hajj during 2012-2015 Comparison of mortality and morbidity rates among Iranian pilgrims in Hajj Treatment and prevention of acute respiratory infections among Iranian hajj pilgrims: a 5-year follow up study and review of the literature Trend of diseases among S Iranian pilgrims during five consecutive years based on a Syndromic Surveillance System in Hajj Incidence of Hajj-associated febrile cough episodes among French pilgrims: a prospective cohort study on the influence of statin use and risk factors MERS-CoV but positive influenza viruses in returning Hajj pilgrims Effect of influenza vaccination on acute respiratory symptoms in Malaysian hajj pilgrims Time to revisit presumptions on the essentiality of influenza vaccination for hajj pilgrims: a prospective cohort study international Pandemic 2009 influenza A (H1N1) infection among 2009 Hajj Pilgrims from Southern Iran: a real-time RT-PCR-based study Health related experiences among international pilgrims departing through King Abdul Aziz international airport Effects of flu vaccine, solely or accompanied by pneumovax-23 vaccine on clinical consequences of the respiratory diseases among Iranian pilgrims in Hajj Influenza among U.K. pilgrims to hajj Medical problems of Pakistani pilgrims in Saudi Arabia Impact of pH1N1 influenza A infections on the otolaryngology, head and neck clinic during hajj Pattern of diseases among visitors to Mina health centers during the Hajj season, 1429 H (2008 G) Pattern of diseases among visitors to Mina health centers during the Hajj season Road map of an ear, nose, and throat clinic during the 2008 hajj in makkah, Saudi arabia Causes of hospitalization of pilgrims in the Hajj season of the Islamic year Pattern of surgical and medical diseases among pilgrims attending Alnoor hospital makkah Infections in travellers returning to Turkey from the Arabian peninsula: a retrospective cross-sectional multicenter study Clinical and temporal patterns of severe pneumonia causing critical illness during Hajj Severe sepsis and septic shock at the Hajj: etiologies and outcomes Pattern of diseases among visitors of health care facilities in Madinah during Hajj season, 1428 H (2007 G) Causes of admission to intensive care units in the Hajj period of the Islamic year 1424 Pattern of medical diseases and determinants of prognosis of hospitalization during Muslim pilgrimage Hajj in a tertiary care hospital. METHOD: The MEDLINE/PubMed and Scopus databases were searched for all relevant papers published prior to February 2018 that evaluated the prevalence of clinical symptoms of respiratory infections, including pneumonia, among Hajj pilgrims, as well as their influenza and pneumococcal vaccination status.


id: cord-289017-vwye3pk9
author: Comach, Guillermo
title: Sentinel Surveillance of Influenza-Like Illness in Two Hospitals in Maracay, Venezuela: 2006–2010
date: 2012-09-11
extension: .txt
mime: text/plain
words: 6275
sentence: 260
flesch: 44
cache: cache/cord-289017-vwye3pk9.txt
txt: txt/cord-289017-vwye3pk9.txt
summary:
  Influenza viruses, including pandemic H1N1 2009, were the most frequently detected pathogens, accounting for 67.4% (97/144) of the viruses detected. CONCLUSIONS/SIGNIFICANCE: Influenza viruses were the most commonly detected viral organisms among patients with acute febrile respiratory illnesses presenting at two hospitals in Maracay, Venezuela.


id: cord-310956-qwe4ndvb
author: Qian, Yan‐Hua
date: 2011-04-18
extension: .txt
mime: text/plain
words: 3705
sentence: 165
flesch: 48
cache: cache/cord-310956-qwe4ndvb.txt
txt: txt/cord-310956-qwe4ndvb.txt
title:
  Attempted early detection of influenza A (H1N1) pandemic with surveillance data of influenza‐like illness and unexplained pneumonia

summary:
  Emerging infections: pandemic influenza World now at the start of 2009 influenza pandemic Mortality from pandemic A ⁄ H1N1 2009 influenza in England: public health surveillance study Guideline for prevention and control of influenza Statistical quality control methods in infection control and hospital epidemiology, Part II: chart use, statistical properties, and research issues Statistical quality control methods in infection control and hospital epidemiology, part I: introduction and basic theory Study on early warning based on influenza surveillance data in Guangdong province Methods for current statistical analysis of excess pneumonia-influenza deaths Time-Series Forecasting Use and interpretation of statistical quality control charts Influenza-associated hospitalizations in the United States Impact of influenza vaccination on seasonal mortality in the US elderly population Can syndromic thresholds provide early warning of national influenza outbreaks? Methods for monitoring influenza surveillance data Trends and Directions of Global Public Health Surveillance The impact of influenza epidemics on hospitalizations Value of ICD-9-coded chief complaints for detection of epidemics Performance of a syndromic system for influenza based on the activity of general practitioners, France Situational uses of syndromic surveillance Sensitivity, specificity and predictive values of health service based indicators for the surveillance of influenza a epidemics Comparing aberration detection methods with simulated data A simulation model for assessing aberration detection methods used in public health surveillance for systems with limited baselines Review of an influenza surveillance system, Beijing, People's Republic of China Disease surveillance using a hidden Markov model The emerging science of very early detection of disease outbreaks The ILI system was implemented for influenza surveillance, and the UP system was designed to track lower respiratory illness with pneumonia symptoms.


id: cord-261241-eqf6ame6
author: van Beek, Josine
date: 2017-08-15
extension: .txt
mime: text/plain
words: 4447
sentence: 209
flesch: 46
cache: cache/cord-261241-eqf6ame6.txt
txt: txt/cord-261241-eqf6ame6.txt
title:
  Influenza-like Illness Incidence Is Not Reduced by Influenza Vaccination in a Cohort of Older Adults, Despite Effectively Reducing Laboratory-Confirmed Influenza Virus Infections

summary:
  Influenza virus was not detected in the corresponding recovery samples in this season, suggesting that influenza virus was the actual cause of ILI. key: cord-261241-eqf6ame6 authors: van Beek, Josine; Veenhoven, Reinier H; Bruin, Jacob P; van Boxtel, Renée A J; de Lange, Marit M A; Meijer, Adam; Sanders, Elisabeth A M; Rots, Nynke Y; Luytjes, Willem title: Influenza-like Illness Incidence Is Not Reduced by Influenza Vaccination in a Cohort of Older Adults, Despite Effectively Reducing Laboratory-Confirmed Influenza Virus Infections date: 2017-08-15 journal: J Infect Dis DOI: 10.1093/infdis/jix268 sha: doc_id: 261241 cord_uid: eqf6ame6 BACKGROUND: Data on the relative contribution of influenza virus and other respiratory pathogens to respiratory infections in community-dwelling older adults (≥60 years) are needed.


id: cord-263464-fdosch11
author: Nuvey, Francis Sena
date: 2019-03-14
extension: .txt
mime: text/plain
words: 4095
sentence: 195
flesch: 44
cache: cache/cord-263464-fdosch11.txt
txt: txt/cord-263464-fdosch11.txt
title:
  Evaluation of the sentinel surveillance system for influenza-like illnesses in the Greater Accra region, Ghana, 2018

summary:
  Even though the WHO's standards for influenza surveillance alluded to the possibility of resource limitation hindering achievement of all influenza surveillance system objectives, it advocates for influenza surveillance systems capable of collecting the minimum amount of data needed for decision making [5] . Morb Mortal Wkly Rep Strategy to enhance influenza surveillance worldwide A summary of influenza surveillance systems in Australia Influenza surveillance in Europe: establishing epidemic thresholds by the Moving Epidemic Method Establishing seasonal and alert influenza thresholds in Cambodia using the WHO method: implications for effective utilization of influenza surveillance in the tropics and subtropics Exploring a proposed WHO method to determine thresholds for seasonal influenza surveillance World Health Organization.


id: cord-307674-4fb5xnil
author: Weaver, Anne M.
title: Household‐level risk factors for secondary influenza‐like illness in a rural area of Bangladesh
date: 2017-01-05
extension: .txt
mime: text/plain
words: 4931
sentence: 190
flesch: 43
cache: cache/cord-307674-4fb5xnil.txt
txt: txt/cord-307674-4fb5xnil.txt
summary:
  We recruited index‐case patients with ILI – fever (<5 years); fever, cough or sore throat (≥5 years) – from health facilities, collected information on household factors and conducted syndromic surveillance among household contacts for 10 days after resolution of index‐case patients’ symptoms. We evaluated the associations between household factors at baseline and secondary ILI among household contacts using negative binomial regression, accounting for clustering by household.


id: cord-347079-1zbsbcdd
author: Silverman, Justin D.
date: 2020-06-22
extension: .txt
mime: text/plain
words: 6244
sentence: 206
flesch: 43
cache: cache/cord-347079-1zbsbcdd.txt
txt: txt/cord-347079-1zbsbcdd.txt
title:
  Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States

summary:
  If non-ILI patients were less likely to seek medical care, then we would expect that the number of patients complaining of other symptoms not typically associated with COVID-19 (for example vomiting) would also decrease compared to prior years. Studies of outpatient ILI have repeatedly demonstrated that confirmed influenza case rates underestimate disease burden, likely due to preferential testing of more severe cases [8, 14, 9, 13 ] .


id: cord-305460-wln758og
author: Alqahtani, Amani Salem
date: 2020-05-04
extension: .txt
mime: text/plain
words: 5394
sentence: 220
flesch: 47
cache: cache/cord-305460-wln758og.txt
txt: txt/cord-305460-wln758og.txt
title:
  Tracking Australian Hajj Pilgrims’ Health Behavior before, during and after Hajj, and the Effective Use of Preventive Measures in Reducing Hajj-Related Illness: A Cohort Study

summary:
  This cohort study captured and compared the health behavior, knowledge, attitudes and practices of Australian Hajj pilgrims regarding preventative measures against communicable diseases throughout the course of Hajj travel (before, during and after the journey). Is it correlated with vaccine uptake? Health related experiences among international pilgrims departing through King Abdul Aziz international airport The prevalence and preventive measures of the respiratory illness among Malaysian pilgrims in 2013 hajj season Changes in the prevalence of influenza-like illness and influenza vaccine uptake among Hajj pilgrims: A 10-year retrospective analysis of data Influenza vaccine effectiveness among Hajj pilgrims: A test-negative case-control analysis of data from different Hajj years Pilot Randomised Controlled Trial to Test Effectiveness of Facemasks in Preventing Influenza-like Illness Transmission among Australian Hajj Pilgrims in 2011 Travel Reported by Pilgrims From Marseille, France Before and After the 2010 Hajj:


id: cord-001521-l36f1gp7
title: Oral and Poster Manuscripts
date: 2011-04-08
extension: .txt
mime: text/plain
words: 183853
sentence: 8162
flesch: 46
cache: cache/cord-001521-l36f1gp7.txt
txt: txt/cord-001521-l36f1gp7.txt
summary:
  The concept that swine are a mixing-vessel for the reassortment of influenza viruses and for the emergence of pandemic influenza viruses has been re-enforced by the emergence of the recent pandemic. This study was supported by Contract HHSN266200700005C from the National Institute of Allergy and Infectious Diseases, National Institutes of Pigs have been considered as hypothetical ''mixing vessels'' facilitating the genesis of pandemic influenza viruses.


